<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:25:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343399" ref_strand="+" ref_description="SGN-U343399        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:28622545-28627625 REVERSE | Aliases: F15M4.22(evalue: 2e-38, score=156) genbank/nr: gi|42563256|ref|NP_177755.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (evalue: 1e-36, score=156)">
      <seq>gaatattagaagggatccagcttgatgtacttctatataacaccatttttcaagtggcagctgagaagggaagaatagatgtcatcgaactcattgttgagcacatgcacctccaaggggttctcccagatccatcaacatgcagtcatgttttcgctgcatatgtagaccatggattctataacactgccatggaagctttgcaagttttgagtgtgcgaatgattgttgaggttgagaaagatacagatgaaaaacgaactgaacttgaaaatctaattcttggtgaagactcggaagatgagccccagattcttaagacttttaaagactcgaaagaatatcttactgttgccttactgcaattaagatggtgcgccatacttggatatccagtatcttggtcaccttcagacagtcaatgggccaggagactttcaagtaattttgcttcaacaaacggtcttctgtgaaggtttcatgtttccacaggtgtgtggactcttttgatcttgcatatcacctggtatgtcaattctcagttctgatacgctaactcgtgatatattaatgatcggaatgggttaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="2536" stop="1239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2236" g_stop="2169" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2168" i_stop="2061" i_length="108">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2060" g_stop="1539" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="590" r_length="522" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U343399" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2236" e_stop="2169"/>
          <exon e_start="2060" e_stop="1539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATTAGAAGGGATCCAGCTTGATGTACTTCTATATAACACCATTTTTCAAGTGGCAGCTGAGAAGGTAATTAACAAATAATTCATCCACTTCTCAAGTTAAATAATTCATTACCTTTTAACGCTTGAATAGATCAGTGCTCTTTCTAACTAGGTCATGAAATTGTGTTTCCAGGGAAGAATAGATGTCATCGAACTCATTGTTGAGCACATGCACCTCCAAGGGGTTCTCCCAGATCCATCAACATGCAGTCATGTTTTCGCTGCATATGTAGACCATGGATTCTATAACACTGCCATGGAAGCTTTGCAAGTTTTGAGTGTGCGAATGATTGTTGAGGTTGAGAAAGATACAGATGAAAAACGAACTGAACTTGAAAATCTAATTCTTGGTGAAGACTCGGAAGATGAGCCCCAGATTCTTAAGACTTTTAAAGACTCGAAAGAATATCTTACTGTTGCCTTACTGCAATTAAGATGGTGCGCCATACTTGGATATCCAGTATCTTGGTCACCTTCAGACAGTCAATGGGCCAGGAGACTTTCAAGTAATTTTGCTTCAACAAACGGTCTTCTGTGAAGGTTTCATGTTTCCACAGGTGTGTGGACTCTTTTGATCTTGCATATCACCTGGTATGTCAATTCTCAGTTCTGATACGCTAACTCGTGATATATTAATGATCGGAATGGGTTAATG</genome_strand>
        <mrna_strand>GAATATTAGAAGGGATCCAGCTTGATGTACTTCTATATAACACCATTTTTCAAGTGGCAGCTGAGAAG............................................................................................................GGAAGAATAGATGTCATCGAACTCATTGTTGAGCACATGCACCTCCAAGGGGTTCTCCCAGATCCATCAACATGCAGTCATGTTTTCGCTGCATATGTAGACCATGGATTCTATAACACTGCCATGGAAGCTTTGCAAGTTTTGAGTGTGCGAATGATTGTTGAGGTTGAGAAAGATACAGATGAAAAACGAACTGAACTTGAAAATCTAATTCTTGGTGAAGACTCGGAAGATGAGCCCCAGATTCTTAAGACTTTTAAAGACTCGAAAGAATATCTTACTGTTGCCTTACTGCAATTAAGATGGTGCGCCATACTTGGATATCCAGTATCTTGGTCACCTTCAGACAGTCAATGGGCCAGGAGACTTTCAAGTAATTTTGCTTCAACAAACGGTCTTCTGTGAAGGTTTCATGTTTCCACAGGTGTGTGGACTCTTTTGATCTTGCATATCACCTGGTATGTCAATTCTCAGTTCTGATACGCTAACTCGTGATATATTAATGATCGGAATGGGTTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332874" ref_strand="+" ref_description="SGN-U332874        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:28622545-28627625 REVERSE | Aliases: F15M4.22(evalue: 4e-83, score=305) genbank/nr: hypothetical(evalue: 1e-90, score=336)">
      <seq>gcagaaaaacattaagtgcatctgttgtgaagcttttgaggtggtccttcaatgatgttatgcatgcttgtgcacaagttcaaaattgtgatttggctgaacagttgatgttacagatgcaaactcttggtttgcaaccatcagggagtacatatgatggcttcattagggcaattgctaccacaagaggctttagtgatggagtggaagtgctaaaggttatgaaagagaaaaatattaagcctcatgattcaactcttgctgttttagcagtcatgtgcagcagagagttggaactcaatctagcagaggctttcttggctgagatgtccaaaatccataatcctcgtccttataatgcttttcttgaagcatgtgatgttctggatcggcccgaacgagcagtccagatattggctaagatgaaaaggttgaatcttcagccaaatatcaggacatatgagttgctattctcactgtttggtaatgtaaatgcaccttatgaagagggcaacatgctgtcacaagtggatgttgctaaaaggataaatgctatagaaatggacatgatgaggaatggcattccgcacagtcatctgtcgttgaggaatgtgttgaaagcgcttggaacagaagggatggtaaaggagctgattcaatatttacgtgctgcagagaatcggttttctcgttatgacacctatatgataacacctgtctataatacagctttacactcccttattgaggctaaagagagtaaagtggcaacacagatattcaaatcaatggtgtcttctggtgttacacctgatgctgcaacatataatatcatgattgacggctgtagcattgttggatgtttcagatctgcacttaccctgatctctatgatgttccgcactggtttcaaccctcaagcagtgactttaactggcctgttaaagatattgttgagatctgaggactttgatggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="7040" stop="1956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6740" g_stop="6625" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230">
            <donor d_prob="0.910" d_score="1.00"/>
            <acceptor a_prob="0.564" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6394" g_stop="6299" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="212" r_length="96" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6193" g_stop="6020" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="386" r_length="174" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5478" g_stop="5251" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="614" r_length="228" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5250" i_stop="3316" i_length="1935">
            <donor d_prob="0.864" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3315" g_stop="3172" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="758" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3171" i_stop="3079" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3078" g_stop="2890" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="947" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2889" i_stop="2289" i_length="601">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2288" g_stop="2256" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="948" r_stop="980" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U332874" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>980</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6740" e_stop="6625"/>
          <exon e_start="6394" e_stop="6299"/>
          <exon e_start="6193" e_stop="6020"/>
          <exon e_start="5478" e_stop="5251"/>
          <exon e_start="3315" e_stop="3172"/>
          <exon e_start="3078" e_stop="2890"/>
          <exon e_start="2288" e_stop="2256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAGGTATTGCTACAATATCCAGTTGCTATGATGTCCCCATCTGTCTAATGTTAGAAAATTTATGCAGGATCGGAAGGATAGTCCTTAGGTCCATATGACTAGGCACATATCATTGTTTTACGCAAAAATAAGCCAATAGCAATTGTCTCAACTTTCTTTCTCAAAAAAAAATTGTCTTAATTTCACAAGGTAATTTCCTGTCTGATTTTCACTAAGCTATCTCTTTTCTTTAGATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTGGTAATATATTATTAGTTTCATGGGATCTTCTTTTTTTTCTTCCAAGAGTAGTACTTGCTTTTGGTTTTCTCATTTTCACATTATGTAATTTGTCTAATTTTGCAGCTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTGGTAAGACAGTATATAATTATTTCAAAAACAACAATATATTTGAAAACATCTGATCATCACTGGTCCCATACTTAGATCAGTACAATAAGAACTGGCAAAGGTTTGACTGAGTTATGTAGGTTCCTGGATGGTTCAATAAGCCAATCAGCTTGTCCAGACTTTTCTTTTTTCTTGCAAGTCAAACCTATCCTTCTAAGCATATTCTTGCTTCTTTAGATCTTGATATTACCACCGTATATTTTGCTCTCTCATGAGATGTTGTAAGGAATATGAGGATTTTGAGCTAGCTCTCATCAAAAGAGTTTTACGCGTCAAGCTAAAAAGTTGCAACTACCCTCTGACTTAAATCATTTTAGGATTTAAATATGGAGAACACTCTCTTTTTGTAACTAGGCCAAGATATATTGCTTTATGATCATTTAACTTCTGCAATATTCAGCATCGTTGTTTTTTCAGCGTCTTTCGATAGAATTGCCCATCTTGTCGATCGTATTATACTGATATGTCCAGTTTGTGATTCTTGTACATATTAATATTGTAGGATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTGGTAATGACTTCTCAACTAAGACAAATTTAGATATTGATTTATTTGAGTACTATTTTACTTCCTAAGCAAGTAGAGATGATGATCAGCCCAATATCTGCACCACTAATTGAATGTGTGATGTCTTTAGAGAGATGGTCATTAAGAGTCTTTTTTAACTTTGATGGTGAAATCTTTACGATGATTAAAAGAGATACTAAATGTCTTTAGAAAGATGGTCATTTAAGAGTCTTTCAGTTAAATTTGATGGTGAAATCTTTACGATGATTAAAAGAGATACTAATGAATGTTATCATTTTTGGTGATGGTGCATAAATTTATGTGTTCATCCTAGCTTTGTGATTCCCAAGTTCATAAACAGGCTGCAACTCGACATTGCCTCTATTAAAATGAGGACACTAGCAGATATTTCTCTGTATGTATCAAAATTATCCACAGCATACTTGTAAACTTCACTCCATATGACTTAAAAAGTGTTCCTGGTATATCAAACAAGTCAATTCTTGGTTCACCTGTCTGGAAGTGTTGAATGCTATAAGTAGTTTCATGACTTATCTGTCTGGAAGTGTTGAATGTTGTAAGTCGTCTCTGGGTTTATCTGTCTGGAAGTGTTGAATGCTGTAAGTAGTTTCATGACTTATCTGTCTGGAAGTGTTGAATGTTGTAAGTCGTCTCTGGGTTTATCTGTCTGGAAGTGTTGAATGCTGTAGTCTTATTTATGCATGCTTCATGATTCTTATAGCTGGAGGCTATCTATTGAGGAAGCAATGAGAGAAAAATGAACTTCTGCCTCCATCATGAACCACACTTTGGATGTACTAGCTCCGTCAACTTTTATTTGTCATGTTGCGTTTTTCGAAAGTCAATTTGACTAATTTTCAAAGTTAAATTAGATTATATTAATTCGACATTTTAACAAAAAAATTTAGATATTCAAAAACTATACGAAAAGTACTATAAATTGCAATTTTTTGCATATCAATATAATGAAAAAATACATCGTAAAATGTTAGTCAAAATTTTTATAGTTTGACTCTAAAAAAGGAAACCATGACAATTAAAAGTGGACAGAGGGAGTATATATCCTTACAGATTGCATATTGGACAGGAGCAACTACTCCTGGTTGCTGTTATGTGCACCTTTTGATTTGGCATAGCTAAATAACTTGCAAGGAAAGGTACACTTTGGGTCACTTTGCTAAAACAAATGTTGTCTGATGACTAAATTTAGTATGGTCTGAGTCACCGAACTAAAAATATTGGAGATGTAATAGTTTATTCAAGCTTATGTCTACTATGCTAATAGCTTTTTATTTTTATTTTATGTGCATTTCATAAAAGCATTTCTCTACTAATTTTTTGTTAAGTTTTTATTAAAATATTTCATACTATTGTCAAATATTGTATGTGTTTGTGTTTAAATATCTTTTCGATATGGTAAGCCTCACCCTCCTCCAAATCCATCTACACAGGAGACCAACAGTGTTTTTTTCACACTTTGCTCCCTTGGTGACTAGAAACCCCTCAATCTCATGGTTAAGATGGAAGACCCTTACCAGTGGGCTATCCGACTTTCCACCATTTAGATATTAGTTTATCATTTATTGAAACATGTGATGTAACATCTTAATATTTCACCAATTTAAGATTCAGTAATCAGTCAAGGTCTTCTTACTTAAGATTCGTAAAGCATTTTAAGTGCCACTTAATGTTTGAAGTAGTTTCTCTTTCCCTTATCAATACATCTAATGTCTGAAATTCAGTTAAAATCCTGAATTGTTTTATCAATAGCTCCTTAAGTTGCAATTTTTTTTTTCTACTGCAGGATTCTCTACAATTTTGTGCCCCAATATTTAAGGGGGCTTAAGGGCCAGTTATAATATTGATGCAATGCTTCAGTATAATATCCATGTCTTTTTACTCTTCTATATTTTCCAGTTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAGGTAATCAACCTAGGGTTCTAGTGTATAAGATCCATTTAATAGTTATATTGGTTATTTTTCATCTGCTGACTAAGTCTATTTTTTTCTTTTCAGAGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAGGTATTAGTTTAGCCTTGTTAAGCTATTCTCACTAATCTGGAAGCTGGATCATTAGAAAAATAAAAAGTAAACTTGCACAAACTTAAGCCTAACCAAGCCTTCTTTATTTTGTTAAAAGGGCTTTTCATGAAGTTGACAGTATGTGTTTTCTATCACTTATTCTGCTAACTTTTAACTATTTAGAAACTTTGCCAAGAAAATCAGTCAAATGATTTAGTAAACCTTGAAACCCAAAATCACCACAAGTCCATAACTAGTTGTGCTGCAACAATTGGGTTTGGATGATACTTCATTTAGCTGGAAGGGGCTTTCTTTGGATGAAAATAATTGTCATTGGTTGGGACAGAATGCCTTGCCACAAGTATCACTTATATTGCCTTTAGTGGTACCTTGGATTTCAACTTTTGGTGAATAAAAAGTGTTGTCTTTCTTCAGGTGAATGTACTACAAGAACTGTAGATGGCTTATCCTAATTTCATGGAAGCATAGTTATTGTTCAACAATTTATCCATCCCCCCCTTCCCCTTCCGCTGTGACTATATAGATATGCAAATGGTACCCACATATATTCCAACTGAAACTGAAATCTCTTCTGCTGTAGATATTGTTGAGATCTGAGGACTTTGATGGAGCA</genome_strand>
        <mrna_strand>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG......................................................................................................................................................................................................................................ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGATGGAGTGGAAGTG.........................................................................................................CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGCTGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGCCCGAACGAGCAGTCCAGATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAG.............................................................................................AGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTGTTGAGATCTGAGGACTTTGATGGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341440" ref_strand="+" ref_description="SGN-U341440        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile PF01535: PPR repeat | chr1:28622545-28627625 REVERSE | Aliases: F15M4.22(evalue: 2e-37, score=130) genbank/nr: gi|42563256|ref|NP_177755.3| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (evalue: 1e-35, score=130)">
      <seq>cgtttaaagcaaaaaaccagagtcgccggaaacactgtcctcgcgggcgggcctagctgtagtcgcagtggtcggactgattacaatttccggactaaccgttctggaaaatttcttcgtgctgctagtactatgaactcatcgaaccgaaagttttaagttatttcacaggaagcattgagaagatgcctaaacttatatcaaaggttcgtgccagttcgatattgcaaagattttcaaaattaaatgctattcgaaatggaggaaaggaagctggaggctacagccaagctatgagaactcttactacctcaaatgggcatgtcggggagccggtttcaagattagggcaaaaacaaattgtcgatgcacttgtcttgggagagagaagaagagctgttagtctcctgtatgagtttagtcttggaaacaacaaattgagtgctgatgattttgcttctatactgcaaagttgtgcaagactgcctgatccattatttgtgatggaaacttggaagatcatggaggagaaggaaatcaacattagtgacaagtgttatgctcttgccgttcgagcactctgtaaagggggttacttaaaggaggcactcagtttgatgagtatcatggcagaaaacacaaattgttattctatgttgccaatttataacaacttcctagctgcttgttatgaaacacaaacaatagattatgctaatgaatgtatggatttgatggagcatcagatggtggggaaagaatgagataacatatgctcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="10435" stop="7660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10140" g_stop="9942" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9941" i_stop="9854" i_length="88">
            <donor d_prob="0.227" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9853" g_stop="9793" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="260" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9792" i_stop="9639" i_length="154">
            <donor d_prob="0.394" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9638" g_stop="9581" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="318" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9580" i_stop="9317" i_length="264">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9316" g_stop="9138" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="497" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9137" i_stop="8825" i_length="313">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8824" g_stop="8717" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="605" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8716" i_stop="8134" i_length="583">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8133" g_stop="7960" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="780" r_length="175" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U341440" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341440" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10140" e_stop="9942"/>
          <exon e_start="9853" e_stop="9793"/>
          <exon e_start="9638" e_stop="9581"/>
          <exon e_start="9316" e_stop="9138"/>
          <exon e_start="8824" e_stop="8717"/>
          <exon e_start="8133" e_stop="7960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGAAAGCAAAAAACCAGAGTCGCCGGAAACACTGTCCTCGCGGGCGGGCCTAGCTGTAGTCGCAGTGGTCGGACTGATTACAATTTCCGGACTAACCGTTCTGGAAAATTTCTTCGTGCTGCTAGTACTATGAACTCATCGAACCGAAAGTTTTAAGTTATTTCACAGGAAGCATTGAGAAGATGCCTAAACTTATGTAAGTACATTTACTATATTATGTGGAAATCAGTCAATTGATTGCACGTCTCTCGTATATATCACCTTTTTATGTGTCTTCTTACCAGATCAAAGGTTCGTGCCAGTTCGATATTGCAAAGATTTTCAAAATTAAATGCTATTCGAAATGTAAGTAATGTGTTACTCAGAAGGAAAATTATGGCATAAAATTGAACTTTTTGGCGTTAAAATTGTTTTTTTTTTTGCTTGAAAGTTTGTTTTGCTACAGTTTGTTGAATTAGATGAAGCACGGAATTCTATTTAATTGATTTTTACTTTGTAGGGAGGAAAGGAAGCTGGAGGCTACAGCCAAGCTATGAGAACTCTTACTACCTCAAATGGTATGAATCATCAACGTGTTAATATTTGTGTATGTGAATATCCATATATATTTGGTACACTGGACTGGTTTATCTATGTAGACATGCAAAGAGGATATGTTTAGGAATCGCTATATTAGCTTGCATAACTAGTCTGCGAACTAAACTGTCCCTTCCTACTGTAAGTTGTTTTTGTTATTAGGTGTCGTACTTAACTGTTAATTTGCTTAGGTCAGATAGGAAATGAATATTGAGGAGGGAAAATTTAATCTTTTGGTTGTTTAGGGCATGTCGGGGAGCCGGTTTCAAGATTAGGGCAAAAACAAATTGTCGATGCACTTGTCTTGGGAGAGAGAAGAAGAGCTGTTAGTCTCCTGTATGAGTTTAGTCTTGGAAACAACAAATTGAGTGCTGATGATTTTGCTTCTATACTGCAAAGTTGTGCAAGACTGCCTGATCCATTAGTAAGTATTCAAATAGAAATCCATTTTCTTTCTTTTCATATGACATGTAACTTTGTGCCAGAGAAAAGTTATATGATGAGCACATATTGCTAATTAATTGCCACTGATTGTTAAATGCTCAATCAATTATACAATGTGTGCTACTTAGATACCCTAAGAGTCATTGGCACATTCAGTGTCAACTACCTTATAGTCTCTTACATTTACTAAGAACAAATAAGCTGACTTCTGAAATGTCATTATAGCATGTATTTTTGTCTCCATCTGAATGATAACTTGAAGTTTGACACTTCTTCTTTTTTCCTGGCTGTAGTTTGTGATGGAAACTTGGAAGATCATGGAGGAGAAGGAAATCAACATTAGTGACAAGTGTTATGCTCTTGCCGTTCGAGCACTCTGTAAAGGGGGTTACTTAAAGGAGGTACCAGAATCCTGGTCTGATTTCCAGATTAGAATAGAGTGGCAGCTAGAAGAACTTATAGAATACTTGTTAAATTTCAAGTCTCAATGGTATTCTTTTTACTTGTCAGAAAGATGAATGTTCATGAGTTGCCAAACCTTTGATTGGACAACTAACATCTAAGTGCTTGATGTTAATACTAAAATAAGAGTCTCCTCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCCTGTGCGCACCAAAAGGGTAGCGACTGCGGGTTTCCCTTGTCGTCAAAAAAATACTAAAATAAGAGGATATTTGTTATTTGCTGCAAGGTATAGTTGACTTATCACATGGTTGGTTAGGTGACTTCTTGTTGATTTTTTTGGAAGTCCAAAACAGATCCTGTTAAATGATCAATTACCCATTATACTACTTGTTGAGAAACTATATTGCCTTTTCCTTGTCGTCTGTCATTTATATGGTTCTGTCTGATATATCTATATCAAGACACTTATTTCAATACTTCCTTTTTGTAAATTTTGTTCTTAAGTTTCATATTTAATGTTTTTCTTTCTTTATTTTTATTCAGGCACTCAGTTTGATGAGTATCATGGCAGAAAACACAAATTGTTATTCTATGTTGCCAATTTATAACAACTTCCTAGCTGCTTGTTATGAAACACAAACAATAGATTATGCTAATGAATGTATGGATTTGATGGAGCATCAGATGGT-GGGAAAGAATGAGATAACATATGCTCAG</genome_strand>
        <mrna_strand>CGTTTAAAGCAAAAAACCAGAGTCGCCGGAAACACTGTCCTCGCGGGCGGGCCTAGCTGTAGTCGCAGTGGTCGGACTGATTACAATTTCCGGACTAACCGTTCTGGAAAATTTCTTCGTGCTGCTAGTACTATGAACTCATCGAACCGAAAGTTTTAAGTTATTTCACAGGAAGCATTGAGAAGATGCCTAAACTTAT........................................................................................ATCAAAGGTTCGTGCCAGTTCGATATTGCAAAGATTTTCAAAATTAAATGCTATTCGAAAT..........................................................................................................................................................GGAGGAAAGGAAGCTGGAGGCTACAGCCAAGCTATGAGAACTCTTACTACCTCAAATG........................................................................................................................................................................................................................................................................GGCATGTCGGGGAGCCGGTTTCAAGATTAGGGCAAAAACAAATTGTCGATGCACTTGTCTTGGGAGAGAGAAGAAGAGCTGTTAGTCTCCTGTATGAGTTTAGTCTTGGAAACAACAAATTGAGTGCTGATGATTTTGCTTCTATACTGCAAAGTTGTGCAAGACTGCCTGATCCATTA.........................................................................................................................................................................................................................................................................................................................TTTGTGATGGAAACTTGGAAGATCATGGAGGAGAAGGAAATCAACATTAGTGACAAGTGTTATGCTCTTGCCGTTCGAGCACTCTGTAAAGGGGGTTACTTAAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTCAGTTTGATGAGTATCATGGCAGAAAACACAAATTGTTATTCTATGTTGCCAATTTATAACAACTTCCTAGCTGCTTGTTATGAAACACAAACAATAGATTATGCTAATGAATGTATGGATTTGATGGAGCATCAGATGGTGGGGAAAGAATGAGATAACATATGCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312528" ref_strand="+" ref_description="SGN-U312528        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04950: Protein of unknown function (DUF663) | chr1:15897725-15902495 REVERSE | Aliases: F7F22.4, F7F22_4(evalue: 4e-114, score=406) genbank/nr: gi|18400634|ref|NP_564480.1| expressed protein [Arabidopsis thaliana] gi|13605690|gb|AAK32838.1| At1g42440/F7F22_7 [Arabidopsis thaliana] gi|22137072|gb|AAM91381.1| At1g42440/F7F22_7 [Arabidopsis thaliana] gi|23397226|gb|AAN31895.1| unknown protein [Arabidopsis thaliana](evalue: 3e-112, score=406)">
      <seq>tgggacccaaaagaatctctacctcaagagtagggctagaatatttgcatttgacaattttaataggacgcaaaagcatgtactgtctagagcccgagagatggaacagaacgttgatgaatgtataccagctggttcatatgcaaggctccatatccgggaagttccaaatggtgtggcaaacaagttaaatcttgtaacgaagacaatgcctgtgatcctgtgtggtctgatgcagcatgagtctaaaatttctgtccttcacttcagcttaaaaaagcacgacagttacactgatccaataaaatctaaagaagagatgatattcaatcttgggtttcgccagtttgttgcaaggcccatattttcttccgatagttttaacgctgataagcaaaaaatggagagatttctccatcccgggcgtttttcagtagcttcagtatatgctcctatttcatttcctccccttcctttaattgccctgaagattaaagacgatgcaactcctgccactgttgctgccattggctctttgagaagtattgacccagataggattattctaaagaaaattattttaaccggttaccctcaacgagtatcaaaacagaaagcgacggtaagatacatgtttcataacccagaggatgtcagatggttcaagcctgttgaagtttggtcaaagtgtggtcgtcgtggtcgcatcaaggaacctgttggtacacatggggcaatgaagtgcatcttgaatggagtcctccaacagcatgacacgttatgcatgagtttgtttaaacgcacataccccaggtggccggaaaagtggttcccgatgacagatgcttaagagaaaggtcaagtggtggcccaggtttatggtttctcccaagtgtgaagggagaagaaatcacatttgctgcacatgggaatgaagctctggttcagaatgagttactattcaagttttgtacgagggaaattttttactttgtttacttttctttctccccaaaggtttcttcagaaaccagtttatagtgtataatatatggtagctcattttttcgtgccacaacacaatcttgtatcacttataaattagttcctaaccgcacaatgatttttttttttttgaatcgttaacaaattttaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="14340" stop="10920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14136" g_stop="14125" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14124" i_stop="14039" i_length="86">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14038" g_stop="13782" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="270" r_length="258" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13572" g_stop="13486" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="271" r_stop="357" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.655" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13390" g_stop="13160" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="588" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12535" g_stop="12457" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="667" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="12376" g_stop="12313" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="668" r_stop="731" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="11644" g_stop="11217" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="732" r_stop="1160" r_length="429" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U312528" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1158</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14136" e_stop="14125"/>
          <exon e_start="14038" e_stop="13782"/>
          <exon e_start="13572" e_stop="13486"/>
          <exon e_start="13390" e_stop="13160"/>
          <exon e_start="12535" e_stop="12457"/>
          <exon e_start="12376" e_stop="12313"/>
          <exon e_start="11644" e_stop="11217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGACCCAAAAGTAACTTCTTCTGTTAATTCAATAATTTGTCTCAAAAAATATCTGGACGTGATCTAATTGTATTAAATCTTGGTTGGGATTTGCAGGAATCTCTACCTCAAGAGTA-TGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAGGTACCTTATCTTGTTATATGATTTTGTAGTATCTCCCCCCTTATTTTCTTCCTTAGTGTTTCTATGTGTAATTGTTCAAGTACTCAAGTAATTTTCACTTCAGGTACCTCATCTTGTTATATGCTTTTGTAATATTTCCCCCCTAATTTTCTTTCCCTAGTGGTTCTATGTGTTATTGTGTAAGTACTCAAGTAATTTTCTTTTTGCAGCTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAGGTGATTTTCATCTCTGTAATAAATTTTGTAGCCTTTTGCCAGGTCAGGTACTAATGTTCATTGGCTTCTTTCTGCCCCCTCCCCCCTGATTGCAGGCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGGGTAAGATTCCTCTGTCATTTTAAAGGGGGGCTTGGATATTCTATTCCTTTGTTTATGTGGGAGGGGTCTGATTTCTGAGAATGACAGCATAATGAAGTATCGCTACTTTAGGTTGGATTGATTGATCAGCTTCGCTACCTATAACACTTGCTATAGTTGTGATTATATTTAGGTTTTTCACTGTTCTGTTTTTTCTCGGCTTTCATTTGTTTACAGCGGTAGAGATGTTTAGAGGATTATTTCTGGAACTTCTTGTTCTGAACAACTTAGACTTTCTGTTTTTTTTTTAATCAAATTTGGTCTATAGACTGAACCTACTAAGTGCCACAATATAGACTTGTTATGCTTTTTTACTAGGCATAACATAACATATAATGTGTGAACCAAAAATCTTGTTAATTGTGTATTCCAGCTGGGATCCTGGTAAAGTTAATTGGAGTATCATTCTAGTCATTCATCCTTGCATGGTAGAGAACTTTTTTGAGGATCATATAATTTGCAATATTTTATTTTAGAATTTTAGGGTTTTTTAGTCCTTAAAATGCAAAAGCTGATTGTAGAGAGTCAGTAGGTGATATTGTTAAGTTAACCTTTTGTTCACAAGATATGTCATCTATGTTGCAGTTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAGGTATGCAAACAATTGACTTTTCTATTTTCTTCTTTGTCATGCTCTTTTCACTTTTAACATATTTACTGGACCTTTTGTAGCCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATGGTATGTCTGAAATTTGATTTGAAGTCTTCGAGATATATGCGGAAATTTTCCACTCTTCTTCTATCCAAACATCTCCCCTCCTCCCCCCTTGAAAAGAGGAAAAAGGCTTGTCCAGATGTTAGAATTTTCCAGTGTTGTGCTCATTAGTGAGTGGTGTTATTTGACTAATCATGCATAAGGTTGTCATTTTCCCCTTATTATGTGGCCTGTGGCCAAGGAAGCCTATTGTGAGCATACATTTCCTCTGTTCACGATGCATATAATTTAGATCTACTAGAAAAACTAAAAGCTCTGCACGTTATTGGGTTCTTTGAGCACTCGACTATCTACAGCTTGTAGGTCAGCAAGCATATGATCATTTCATTGCCCTTCTACCATTTGTGGGTGCCCGAACATTTTGACCCTTTCTAGATGAATACCTGCTGTCGCATGCTCTACTAACTGGCAAAAGTACAATTGTTTTTTGAGTCTGTTGTAGGATGTATTATGTCTTTTCGATGTTCCTTGTCATGGATTTAACTTGTACATGTAGCAGCAGGCAATTTGCCTCATTTCGCCACTAATCCCACTTTTTGTAGATGGTTGCCTGTAGTATTTCTTGTAGCTGACTGGACAACGTAAACAATCTTGCATTGGTAGTGTAAACATGTTAATCTATTTTTGTGCAGGGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCTAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGAT-TTTTTTTTTTTGAATCGTTAACAAATTTTATAGCA</genome_strand>
        <mrna_strand>TGGGACCCAAAA......................................................................................GAATCTCTACCTCAAGAGTAGGGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAG.................................................................................................................................................................................................................CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAG...............................................................................................GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG................................................................................CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCAAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGATTTTTTTTTTTTTGAATCGTTAACAAATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323600" ref_strand="+" ref_description="SGN-U323600        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, contains Pfam domain, PF04950: Protein of unknown function (DUF663) | chr1:15897725-15902495 REVERSE | Aliases: F7F22.4, F7F22_4(evalue: 2e-162, score=568) genbank/nr: gi|18400634|ref|NP_564480.1| expressed protein [Arabidopsis thaliana] gi|13605690|gb|AAK32838.1| At1g42440/F7F22_7 [Arabidopsis thaliana] gi|22137072|gb|AAM91381.1| At1g42440/F7F22_7 [Arabidopsis thaliana] gi|23397226|gb|AAN31895.1| unknown protein [Arabidopsis thaliana](evalue: 2e-160, score=568)">
      <seq>gtttattgttagaagaaaaattgagggctgtttactcaatcgtagagaagatgggaggtgctcgagctcaagtaaataaagctcacaaaactcgatttgcttcaaagtcatctcgcaatgttcataaagtttcttcaaaagataagagtagaattgcgaaacctgatcgcaatctcactaagggagctcgggcagctcggcttcagcgtaataagatgatgagggagcagaaaagagatgctcttttgaaagagaaaagagcttcatctggatcaaatagtccgcccagagttattgttctgtttggcctatcccgatcagtcgaccttagtgcgcttgaacaagatctcctgaagctattgtccgcagatggaactgttgttgtgtatccagcagttgcttcctcagaatataagttgagagcaacggttttaaaagcacctcatggtgatctcttggcatgtatggagatggccaaggttgctgatctgattgcttttgtcacatctgcaagttcctctaatgaagaagattgttatatagatgcatttggatctcactgcctttcgatctttagagctcttggtcttcctagtacagcagtactgattcgtgatctacccagtgagttaaaaaagaaaaacgattcaaagaaggtttgtacatctagcctgtcttctgaatttcccgaggattgtaagttctatccagcagatacaaaggatgatttgcacaagttcttgtggcttttcaaggagcaaaggttctcagtaccacattggcgtaatcagcggccatatctaatggctcaaaaggtcgacgtggtagctgataattccatttctggaaaatgtacactcctcctctctggttatattcgtgctcgtagcctgtcggtgaatcagctggttcacataacaggtgctggagattttcagttatccaagatcgaacttctcaaggatccatgttccctgaatgtgagaaaaggaggagacttaatggagtctgatgacatgaatgaggcacaggtcatcagttgcttgactcctgaccctatgaagcaagagcctttacttgttgagaatgtccctgatccattggctggggaacagacatggcctactgaggcagaaatggctgaagcagaaagaaatcaagaggaaagaaagctgaaaaggaaaactcttcctaagggcacttctgaatatcaggctgcttggattgtagaagattcagatgctgatgtttctgagagcgagaatgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="20278" stop="14821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19978" g_stop="19838" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19837" i_stop="19764" i_length="74">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19763" g_stop="19687" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="218" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19686" i_stop="19425" i_length="262">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19424" g_stop="19347" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="296" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="19346" i_stop="18962" i_length="385">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18961" g_stop="18830" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="428" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18829" i_stop="18139" i_length="691">
            <donor d_prob="0.108" d_score="1.00"/>
            <acceptor a_prob="0.670" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18138" g_stop="18088" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="479" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="18087" i_stop="17995" i_length="93">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="17994" g_stop="17860" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="614" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="17859" i_stop="17753" i_length="107">
            <donor d_prob="0.121" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="17752" g_stop="17630" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="737" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="17629" i_stop="17520" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="17519" g_stop="17442" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="738" r_stop="815" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.966" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="16603" g_stop="16511" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="816" r_stop="908" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.165" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="16436" g_stop="16314" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="909" r_stop="1031" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="16313" i_stop="15690" i_length="624">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.797" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="15689" g_stop="15606" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1032" r_stop="1115" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="15605" i_stop="15370" i_length="236">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="15369" g_stop="15271" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1116" r_stop="1214" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="15270" i_stop="15176" i_length="95">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.898" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="15175" g_stop="15121" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1215" r_stop="1269" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U323600" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1269</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323600" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19978" e_stop="19838"/>
          <exon e_start="19763" e_stop="19687"/>
          <exon e_start="19424" e_stop="19347"/>
          <exon e_start="18961" e_stop="18830"/>
          <exon e_start="18138" e_stop="18088"/>
          <exon e_start="17994" e_stop="17860"/>
          <exon e_start="17752" e_stop="17630"/>
          <exon e_start="17519" e_stop="17442"/>
          <exon e_start="16603" e_stop="16511"/>
          <exon e_start="16436" e_stop="16314"/>
          <exon e_start="15689" e_stop="15606"/>
          <exon e_start="15369" e_stop="15271"/>
          <exon e_start="15175" e_stop="15121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTGTTAGAAGAAAAATTGATTGCTGTTTACTCAATCGTAGAGAAGATGGGAGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCATCTCGCAATGTTCATAAAGTTTCTTCAAAAGGTTCAATTTTTTTTTCTATTAATTGTGTTATTTTGCTTAATTTATGTATTGATTGTCTTTTTGGTTACGTTTAGATAAGAGTAGAATTGCGAAACCTGATCGCAATCTCACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATGGTAAATTTTTGGTATCAATTTTTTATGTTTAGCTGACTCTTAACTAGTTTGGGATTGATTTTTTAGTTGTAGAAGTAAGAAAAAGTACTGCATTCTGTTTTATTGAGTTATCGTGTAGTGTGGTATGTGGATAAGGTGAAATATCCTGGTTATGAGGTGGGTTAAATTAGTCCAGTATTTGTGATTGCACGACTATAATGCCAGGATAATTTTGTCAACCAAACTACTTATTGTTATATGCTAAAAAAATGCAATTTTGTAGATGAGGGAGCAGAAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATTGTAAGTATTCTTCTTTGTTTTTATTGTTTCTCTCTTCATTTTTGGATTCCTATATAATGATCCCGGACATAATGTTGGACATGAAGAATAAAATAAGAAAAGTTTTTTCTTTGCTTAATTTTTCAAATTTTCTTAGGATTTGGTCTATTTCCATACATTTAACTAAGAACAACTACAAATAATTTCAAATTGGAAAAAAAATTAAAAGATCAAGTCATCAATGGAAAACTTTTTTGGATTGTTGAATGAAAAGATTTAATTAGTAATCTTGAATTGATGTTAAAGCAGTTATTATAAGTAATCCGACTCCATGATCAGCTGGAGTGAAGGAGAAGGAAGATATCTGTTATCACGCATCAGTTCCTGACAATTTTTTATGTGACAGGTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACGGTAGGAGTGCATTGTGGGAACTCCCTTTATCAATTAAGTACTATACTTGCATTATTGAATTGGTCTCAGGTTCTAATTTTGGTGAAAGTATCATATAATGAGTAAACAGAAACAGAAGCTTTTGCATCTCTGCAAACATAGTTTTGTCAAGTACAATCAATAAATCAATAATGTTTAGAGGACTTATGCCTTAACCTTGGTAATCAACTGACTTCAGACACTTGATTAACTTCAGGATGGTAAAGTAATATGTCCGATTTTTCTTTCAATAAGTAAAACACATCACTGAATAGTATTAAGAAGATTCTGAAATACAGAGTTCGAAAAGCAAAATGTGAGTTTCTTTTTCTAATCTATAATAGAACTTCAGCAAGATAGGGAAGTCATTTATGGGACTATAAGCTTTAATAGTACATTATAGGATAGGAGGAGCTTTGACTGCACTTAAGAGTATGAGTAAGAGGATGCTAGGTTCAGGTATGTGTTTGCCATACCAAAATGCCAGAGAAAATCTTATTTACTCTTATGAATTTTTCATATCACAATTTTTTTGGTGTCAAATCTGATGCCAGAAGCAGCATACAGTAAATTGTTTGTCAGTTATTGATAATTGAGTAGTTTTCCTTGCTTTGACTTGTACGTTCTTCACAGAAAGTTCTGCAGAAGTTTAACAGTAAGTTATTTTATCTAGGTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAGGTATGATATATGCCCTGAAGTATTTCCAGGTTTTGGTTGCTCTTACGTTCTTTGTATCAAGGATGATTTAGTTAGAAGCTTTGGCATTTGTAGGTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGTGTAAGAATTAAAGATACTTCTCTGGAAGGAAGTGCTTTTGTCATATTCTTGAGAATGGTAGATAATTAAGGAGTTGACACTTGAACATGTCTTTTTCTGTGTTTTAGGATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCAAAGAAGGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAGGTAATGATTTGGAGATTCTGTTTTATGATGTCCTCTGATATATCTCTATCATAGTGTATTAACCTATGAAATTATTGTTTGTTCTTTTGGGTCATTTTTGTTATTTGTAGTTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAGGTATTAACCACCTTCCATTTTCCCACTTGACATAGTTTATCTCCTTTGTGGCTTCTGACTGGTAACATTTTCTTTTAGCTTTTTTAGATGAAATATATTCACCAGGAAAAAAAGGAGCAAAACCAATTATTCCCCAAAGTATACATCGTTAAATCAGTCTTGAATTTGGTTGTTATTTATGTATGTTAATCTTGAATGAATTTTCTCCAATGTTGTTTGACTGTGAATGTTTCAAAGCATAGAGGGGATATATTGATCATATCGTTGACCCCAACTAACTTGAGATTGAAGTGTAGTTATTGGGTGGTATTTTATCTGTTTGCACAATTTCTTTTTTAAAGTAGTTATCCAATTCAGCACCTGCTTTCCTGAATTATAATGTGTATACTGTCCCTCCTAATACATTTTTCTACAGAACATAACAGTGATTGCTTATCTATTTTTTTAACCATTATGTGGAAATTTAGTTGTCTTGGTGACTCTTATGGAAGTAATGTATTTGTATCCGTTCATTCATTTTTAACAGTTAGGCGGACATTTCTTGACAATCTTCTGAATGGGCCTAAAGAAAGCAGCATGGGTACAACAGATTCATATAGCCAATTCTAACTAGCTTGGGATTGAGGGATAGTTATTAATTGTAAGACAGCATTTCTTCATGCCTAGGGCTCTAGACCATGATTTTGACTACCCAATAACTAAAATGTATAGGCCATGATTTCGTGTGCTCAACTTCATATTCAATGTTGGTGACTCTGAATTTACTTTGTTCTCAACTATGGTTTGGGGCCTCTGTAATTCTGCAGATAAGGTTGTTAGTGTATATTTTGTTTTTCAGGTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTGGTAATTGTTTTGCTTCACCATATAGCTTTGAGATATTAACGAATTGTCCTTGACAGTAGATGCTCTTGGATCAGGTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAGGTGCACTTATATTTTGTTTACTTAAAGAGAAACTCTTTGTGGTATTGCAGAAATTATTTGATAAAGATAAAACTTGAACTGTAAAATATTGGTTTCCAATTGAATCTACTCATGCTTGAATTTCTTTGGGTTCATTTCTTGTCTCACCATTCTTCCCTTTTTTTGGACCTAGAGGCAACATTTTGGCAGACACCAAAATACAATTTATTAATGAACTTGATCAGCTTTGTCCTTCCACTGGTTAGCTATGCTCCTCGTAGAAGGCATTTTGCTCATGAAGTCCAACATTTCAAAGTTGTACATTGCAAATTGCATATTGAAATACATAGAGGTTCAAATGCTCAAGTTACCACAAGTGTAGTTATAACCTTGTACTAAAATAATGGGATACATATGACATTGTAGCTATGTGCTCCTAGTGCAGCTGTCATCATTCTTCCCCCTTTTCTGAATGATGCATTTTCAAAAAACCCAACCCCTCTCCTTGAGTGATGCAACATGATATGCAATCATCTATTCTCCCCTGGGCCTTCTGTAGTACATTTCATGGTTTCTTTAACAGAATACTTTTTGTTTCCCCTCTTCTCAGATCTCATCCCAGCTATGTCTTCTAATGTATTTCAGGTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAGGTATAACTCTATTCTTGGCCCAATTTTATTGTTCATTCTATGGAAGGAGGAGTGGAGAAAGTTCCTATATGAAATGCACGAGTTATATCATTTTACCCTGTGCAATTCTTTTGTAACTACTGAACTATTGGTTCTTGATGAGATGCACTTGTTTCATAATTGTACCTACTTGTGCCATTTTTCTGTAACCATTTGTAATTTGTACAAATACTTGATGTCTATTTGATCTTAATCAGACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTTCCTAAGGGCACTTCTGAATATCAGGTTCATTTTCTGTCAATAGTTTCCCGAACATGTATGTATTCTTATTGTAACCTGGGCATATTGGTTTATACTAGAATTAATTAGTTGAGTTGCAGGCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTTTCTGAGAGCGAGAATGAAG</genome_strand>
        <mrna_strand>GTTTATTGTTAGAAGAAAAATTGAGGGCTGTTTACTCAATCGTAGAGAAGATGGGAGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCATCTCGCAATGTTCATAAAGTTTCTTCAAAAG..........................................................................ATAAGAGTAGAATTGCGAAACCTGATCGCAATCTCACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATG......................................................................................................................................................................................................................................................................ATGAGGGAGCAGAAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATT.................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAG.............................................................................................GTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGT...........................................................................................................GATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCAAAGAAGGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAG..............................................................................................................TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTG..........................................................................GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAG............................................................................................................................................................................................................................................ACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTTCCTAAGGGCACTTCTGAATATCAG...............................................................................................GCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTTTCTGAGAGCGAGAATGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324748" ref_strand="+" ref_description="SGN-U324748        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc carboxypeptidase family protein, contains Pfam domain, PF00246: Zinc carboxypeptidase | chr5:16935879-16938685 REVERSE | Aliases: K5J14.5, K5J14_5(evalue: 9e-75, score=276) genbank/nr: gi|15238926|ref|NP_199047.1| hypothetical protein [Arabidopsis thaliana](evalue: 7e-73, score=276)">
      <seq>ggaaaatatgtgcatcatttgaaccacatgtatgggttaacgtgcattctggaatggaggctctatttatgccatatgatcacaagaacacgactccggaaggattaccttctcagagaatgagattaatgcttgaaaagttgaatcgttttcagctgaatgatcgttgcttggttggatctggcggaggctctgtcgggtatctagctcacgggacagcaactgattacatgtatgatattgcaagagtgcccatgtctttcaccttcgagatctatggtgatagcacggcctcgtcaaaggactgctttaagatgttcaatcccactgacatcactacttttaatagagttctcaacgactggtctgctgcattttttacgctattcagtttgggtggagtccagattgaggaacttcatccaaatgcaactggatccggttttgagaagtgggtctctatcgatgattatctgaatggttatttaatggaaaggaaaagtaggtacgggaagaaaatggaggtgctcgagctgggaatgcaggagattaggacatactttagattgttcttgttatcatctgtacttctgatgtttatgttttgttcaagaatctcaaagagcggccggcaaattgtttctgctatgtccttgtgattctgtgatggtattctttgctgcccttgagatttagctagacagttttgagagagctagaaggtgaaaaaaagggcatgccaaaatattctttagctgtgtaatttattacctaatttctttttccctttgattctatatagaatgctagagcttagaaaggctcttgttgatgttgaattgttaacattgtttggttgagagtgtggatagataatatagatttttgtcatgtcctaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="24214" stop="21505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23914" g_stop="23856" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23343" g_stop="23204" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="199" r_length="140" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22889" g_stop="22817" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="272" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.869" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22694" g_stop="22620" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="347" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22355" g_stop="21806" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="897" r_length="550" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="898" polyA_stop="912"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U324748" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23914" e_stop="23856"/>
          <exon e_start="23343" e_stop="23204"/>
          <exon e_start="22889" e_stop="22817"/>
          <exon e_start="22694" e_stop="22620"/>
          <exon e_start="22355" e_stop="21806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAGGCAAGTATACTTTTGTTAGTATGTCTTGCTGCTGTTTGTCTTCTGAACTTCTCTGCATATATAAAACATACCATTTACAAGCTTTCCCCATAACTCTTTTTAAAATTTAGGGCATAGAGGAGTCCTACGACCTTGTAGGACTCTCCTAGACATTTTGCAAGGTGCAGCTCCTTTTAATAGATTATAGCTTGTGCCTGATCTCCCCATCTTGTTTAGGTAAAATCATGAATTCAAACTACAATAGGATGATCAAATTTAACCATCTTTTCATTTGAAAATTTGTGTGTATCTACTTCCATAAATTAACTGGTCAAAGTGAACCAAATAGATGTATGTCAGGTGTAAATTGTCTTCTTCATGTTTATGACGTTTTACTGTTTTTGGTATATTAAGGATCAAATTTCAGGATCACAGAGATTATCTTCTTCATTTTTTTATAAAGAATAATAATCCATTTTAGTTTCTTTGTGAATGAAATACTTATTCTGTGCTGTTCATGTAATTTTTTTCAGGCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGGGTTGGTATCACTTACTCATCACTTTTATGTTTAGCTACTTGGCTTGAGAAGGGAACATAAGTGTATTCCTGTTAGATATATGCAATATGCTTGTTGTTTATCTAGCAGTGAATGTATTTTCTATTACTGCATGTTAAGCCACTTATGGATAAAAGAATAATGATAAAGTCACATCACAGTGTTAGGCATGAAAAACATGCACATCTGATGCCTTCCTCTGTTTGAAGTAGATATTAGGGTCACCATTTCTTTATTATGTAGTTTTAGATGTAAGTTTTCGTTACCTCAAGTATAACATTACGTCACTTATTCAGGTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAGGTTTGTCTTTGCATTTTATCAATCAATATACAGTAAAGTCCTTGCTCAATGTCAAGCATCTTTTTAGTGATAATGCAATGTCCGATAATGTATACATGATGCATGCATCTATTGGTTGGCAGATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAATGTAAGTTATACCCTCTGTTCCATTTTATGTAATACTCTTTCCTTTTTAGTCTGTTTCGAAAAAGGATGATTGAAACAATTTAACTTTAAATTTCGCACTTTACCCTTAATAACATGATTTTGTAGCCACAAAATTCTTCAACTCCATACACAATCAAACACCTTCACTCAAAATGCATGAAGGGGACATTTCGTAGATGATGCATTATCTTTGCTATGTGTCTTGTCATGTCAAACACTCAGCCATATTCACTTTGAATTGCAGAGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</genome_strand>
        <mrna_strand>GGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGAATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG..........................................................................................................................................................................................................................................................................................................................GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG..........................................................................................................................ATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAAT........................................................................................................................................................................................................................................................................AGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTATTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339498" ref_strand="+" ref_description="SGN-U339498        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc carboxypeptidase family protein, contains Pfam domain, PF00246: Zinc carboxypeptidase | chr5:16935879-16938685 REVERSE | Aliases: K5J14.5, K5J14_5(evalue: 1e-73, score=240) genbank/nr: gi|15238926|ref|NP_199047.1| hypothetical protein [Arabidopsis thaliana](evalue: 1e-71, score=240)">
      <seq>tcaaaacaaagggtatcatgcagagacgactgtagttacttattgccggaacaagaaagactgcgatgacagataaattgcttgtgttccagagttttgggcagcatgggagggagctcataactacggagcttgcgttgcggattctttccattttaagtgaagaggaattcttatccagtgcatacccacttaatttaaataacacgcttgataggcttgtcataaaggttgttccaatggagaatgtgaatgggcgtaaacttgtagaagcaggggatctctgtgaaagaagaaatggaagaggagttgatcttaatcggaattggagtgtggattggggcaagaaagagaaggattatgatccatatgaagaaaatcctgggtccgccccttttagtgagcccgagacacaaattatgcggaaaatatgtgcatcatttgaaccacatgtatgggttaacgtgcattctggaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="25957" stop="23560"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25657" g_stop="25586" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25585" i_stop="25319" i_length="267">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25318" g_stop="25161" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="230" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24459" g_stop="24390" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="300" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="24299" g_stop="24244" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="356" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="24243" i_stop="23982" i_length="262">
            <donor d_prob="0.755" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="23981" g_stop="23860" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="478" r_length="122" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U339498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25657" e_stop="25586"/>
          <exon e_start="25318" e_stop="25161"/>
          <exon e_start="24459" e_stop="24390"/>
          <exon e_start="24299" e_stop="24244"/>
          <exon e_start="23981" e_stop="23860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTTGTAAGTTTACTTTCTTTGGTCCGTTATTACCTTTATTCATGTCCTGTAGAATGGAAATATATGTTGTATTACCTTCCCAGGGTTTCCTAGTTAAGATAGTTAACTCACGAGGAAAAAGGAGAGAGGAGGGGAAGTAGAGTGGTTTCTTTGAAAAGACATTGGGAAAATGCTTTTCCAGACATTATACTGATTTGGTCTTTAGTGTTAGAAAATCTCAGATTGGTCATTGCTGGTGTTTTTGACAGATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAGGTAACTCCTAGTCTATTTGGAACTCACAGTCAAATAAGGTGAAAATAATTCATGTATATGTTTTATGAATCTATAAGTTGTTGAATCAGAAAAATTTTAACCACTCCTAATTGAACAGGATCTATATTTACATTCATCCCCTCTTCAAATGTTTAGTTCCTCAGCTCTTTTAGTACCCTTCAAAAATATCCTGCAGAACTTCTTTTATTTTAAGGTTCTTCCATTGTCCACACCTGCTGATGTTGGTGTGATTTTGTTATCCCATCCTCCAATGTACTGAAGCAGTTTGTCTAGGAGATTCTAAATTAGCCATTTTCTGAAGATTTCCCTGCACAATGCAAAACATTTTTTTTGGCAGAGACAGATTAACCTTTCACACAGCTCTCATAGAGAGAGCTCGCTGTCTCAAATTTAGCGTATTGATTTCTCTGTTTTGTCAGACATCAGTAAACATCTTTCAAGTTGTTTTCTAGCTGCAGGTTGTTCATTCAGCTCAGTAAATTCGTTTTAGTCACTGTTTGCTTTTTAAATCTATCAGGTCCTGCTGGTATAGAAATTCAAAATTCACCCAATTAATTAGTTCACTGTATGCCATGGGCTGTAAATAGTTAAAGAAACAAAGATCTTTATCACTTTAAAGAGTATCCAAATTCTCTTTTAAACTAATGTTACTGGGGAATGCTTTTTAATCCGTCTAACAGGTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATGGTATAGCTATTTATCTTGCTAGTCTGATCACAGAAATTGACTCTATAGGGAAGTACCAAGAAAATTATTTCCAACCCTTTTTTTTGGCAGGAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAGGTTTATTCTTTAGACTGCCATTAGTAGACGATTCATTGTGTTTCGATCATGTGTGTCTTCTTTACTGATGTATGGACAGGTTGTGTTCCTTTTATATAGGTTGTTACTTATGCATCTTGTGGTGCTTAAGTAATATTTGCACTTAGTACCAAATTAGGATTGCTTTACTGGATCTTGTGTATATGCTGTTTGTGTTTACTAGTTCAAGCTGATGCAGCTATGTGCTTATACAACTCTTGTCCCTTTGATCTTTACTTTTCAGGATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAAT</genome_strand>
        <mrna_strand>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAG...........................................................................................................................................................................................................................................................................ATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG..........................................................................................GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAG......................................................................................................................................................................................................................................................................GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339499" ref_strand="+" ref_description="SGN-U339499        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc carboxypeptidase family protein, contains Pfam domain, PF00246: Zinc carboxypeptidase | chr5:16935879-16938685 REVERSE | Aliases: K5J14.5, K5J14_5(evalue: 3e-51, score=199) genbank/nr: gi|15238926|ref|NP_199047.1| hypothetical protein [Arabidopsis thaliana](evalue: 2e-49, score=199)">
      <seq>agaaagaccaagcaatcatagccgttgaatctctacaaatcaacgacgccctgaccactgtcgtcttcttccccatcactgccggcatatcttttctttcacaattcctatgtttttaaagttttgggattgtcaaagaaaccaaaaagatttgaaatagtcgagaaaaaaagagacatttgggttgaatcaaacaacacaaatcaccggatgttggtgtatttatctgtaatttaaatggggttgcgtcgtcgccggcgtttgtattctttacccgtttcgccattagtcttgtttggagttgtgttgattgttctgtgttcttcgtttgtaaatggaaattcgaattccacgcaaatacctattactcccatcaatcacgatctctatcatacaaggggagctttgttggaagagatagaatcattggtccatagacacccaagcaagctctctatggagacattttccactcaaaacaaagggtatcatgcagagacgactgtagttacttattgccggaacaagaaagactgtgatgacaggtcaaagcttaagatccttcttagttttgggcagcatgggagggagctaataactacggagcttgcgttgcggattctttccattttaagtgaagaggaattcttatccagtgcatacccacttaatttaaataacacgcttgataggcttgtcataaaggttgttccaatggagaatgtgaatgggcgtaaacttgtagaagcaggggatctctgtgaaagaagaaatggaagaggagttgatcttaatcggaattggagtgtggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="27135" stop="23960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26835" g_stop="26435" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26434" i_stop="25842" i_length="593">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25841" g_stop="25784" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="456" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25783" i_stop="25675" i_length="109">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25674" g_stop="25564" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="567" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25563" i_stop="25299" i_length="265">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25298" g_stop="25161" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="705" r_length="138" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="24459" g_stop="24390" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="775" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="24299" g_stop="24260" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="815" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U339499" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>818</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339499" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26835" e_stop="26435"/>
          <exon e_start="25841" e_stop="25784"/>
          <exon e_start="25674" e_stop="25564"/>
          <exon e_start="25298" e_stop="25161"/>
          <exon e_start="24459" e_stop="24390"/>
          <exon e_start="24299" e_stop="24260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGACCAAGCAATCATAGCCGTTGAATCTCTACAAATCAACGACGCCCTGACCACTGTCGTCTTCTTCCCCATCACTGCCGGCATATATCTTTTCTTTCACAATTCCTATGTTTTTAAAGTTTTGGAATTGTCAAAGAAACCAAAAAGATTTGAAATAGTCGAGAAAAAAAAAAGACATTTGGGTTGAATCAAACAACAAAAATCACCGGATGTTGGTGTATTTATCTGTAATTTAAATGGGGTTGCGTCGTCGCCGGCGTTTGTATTCTTTACCCGTTTCGCCATTAGTCTTGTTTGGAGTTGTGTTGATTGTTCTGTGTTCTTCGTTTGTAAATGGAAATTCGAATTCCACGCAAATACCTATTACTCCCATCAATCACGATCTCTATCATACAAGGTAAGAATTTGAGCTTTTTTTGAATTTCGATTTGTGATCTAATTTGGGTAGTGATTTGTGGTAACTAGGATTACTGAATGTTGTAATTAGGTTAGTATTTGAATTACTTAAGAGTGGAAATGAACTTTTATGGAAAGGTTGTGCAATTAATTCAAGTTTGATAGAACTATATTGAGAAAGGTGAGAACTTTCTTCTTTTCTTTTTGCATCAGTGTTCTGTATTTTCGGAATTTAATGACTATAAAGGATTCATAGGGCCGACTCGAACTGATTTAGGATTGAGTGTAACAGATTGATTTGGGACTTAATGAAGTTGGGGTAGGAGGTTCTAGCTCACAATGAATTATTGGTGATGTTAATGAATGTGAGTAGCTTAACATCTTATTTGACTGATGAAGTGAATCTTTATAGATATTAGTGTGCTAAGGCTGTATGAGAGGCTCAATTTTGATTGCTGAACTTTATATGTTATGGATCAAGAAAGGTCCTCACTCGCTCTACTGCTTTTCGGCTTTAGTTTTTACTGTGAAATGGGAGGTGGAATGAGGTGATTTGTGCTTCGATTTTCAACATTAATTTATGGTGTCTTCTAGGGGAGCTTTGTTGGAAGAGATAGAATCATTGGTCCATAGACACCCAAGCAAGCTCTCTGTGAGTTTTCCCCTATCTCATACCTTTTTAAATTTTTGTTTTGGGAAAATTGGAACTACAGAAATATGCATCTTCTCTTAATATCTCAACTTAATTCATATTTATGCAGATGGAGACATTTTCCACTCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTTGTAAGTTTACTTTCTTTGGTCCGTTATTACCTTTATTCATGTCCTGTAGAATGGAAATATATGTTGTATTACCTTCCCAGGGTTTCCTAGTTAAGATAGTTAACTCACGAGGAAAAAGGAGAGAGGAGGGGAAGTAGAGTGGTTTCTTTGAAAAGACATTGGGAAAATGCTTTTCCAGACATTATACTGATTTGGTCTTTAGTGTTAGAAAATCTCAGATTGGTCATTGCTGGTGTTTTTGACAGATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAGGTAACTCCTAGTCTATTTGGAACTCACAGTCAAATAAGGTGAAAATAATTCATGTATATGTTTTATGAATCTATAAGTTGTTGAATCAGAAAAATTTTAACCACTCCTAATTGAACAGGATCTATATTTACATTCATCCCCTCTTCAAATGTTTAGTTCCTCAGCTCTTTTAGTACCCTTCAAAAATATCCTGCAGAACTTCTTTTATTTTAAGGTTCTTCCATTGTCCACACCTGCTGATGTTGGTGTGATTTTGTTATCCCATCCTCCAATGTACTGAAGCAGTTTGTCTAGGAGATTCTAAATTAGCCATTTTCTGAAGATTTCCCTGCACAATGCAAAACATTTTTTTTGGCAGAGACAGATTAACCTTTCACACAGCTCTCATAGAGAGAGCTCGCTGTCTCAAATTTAGCGTATTGATTTCTCTGTTTTGTCAGACATCAGTAAACATCTTTCAAGTTGTTTTCTAGCTGCAGGTTGTTCATTCAGCTCAGTAAATTCGTTTTAGTCACTGTTTGCTTTTTAAATCTATCAGGTCCTGCTGGTATAGAAATTCAAAATTCACCCAATTAATTAGTTCACTGTATGCCATGGGCTGTAAATAGTTAAAGAAACAAAGATCTTTATCACTTTAAAGAGTATCCAAATTCTCTTTTAAACTAATGTTACTGGGGAATGCTTTTTAATCCGTCTAACAGGTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATGGTATAGCTATTTATCTTGCTAGTCTGATCACAGAAATTGACTCTATAGGGAAGTACCAAGAAAATTATTTCCAACCCTTTTTTTTGGCAGGAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTG</genome_strand>
        <mrna_strand>AGAAAGACCAAGCAATCATAGCCGTTGAATCTCTACAAATCAACGACGCCCTGACCACTGTCGTCTTCTTCCCCATCACTGCCGGC--ATATCTTTTCTTTCACAATTCCTATGTTTTTAAAGTTTTGGGATTGTCAAAGAAACCAAAAAGATTTGAAATAGTCGAG-AAAAAAAGAGACATTTGGGTTGAATCAAACAACACAAATCACCGGATGTTGGTGTATTTATCTGTAATTTAAATGGGGTTGCGTCGTCGCCGGCGTTTGTATTCTTTACCCGTTTCGCCATTAGTCTTGTTTGGAGTTGTGTTGATTGTTCTGTGTTCTTCGTTTGTAAATGGAAATTCGAATTCCACGCAAATACCTATTACTCCCATCAATCACGATCTCTATCATACAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCTTTGTTGGAAGAGATAGAATCATTGGTCCATAGACACCCAAGCAAGCTCTCT.............................................................................................................ATGGAGACATTTTCCACTCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGTGATGACAGGTCAAAGCTTAAGATCCTTCTT.........................................................................................................................................................................................................................................................................AGTTTTGGGCAGCATGGGAGGGAGCTAATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG..........................................................................................GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343855" ref_strand="-" ref_description="SGN-U343855        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cgttcacctgggactccaaagtgcctgctttgcgtcccctttggatttatctcagcaatcacatcagttgcggaaaatgctgaactgaaaaaaaaaaaaaactgcaagacaattaaaacgggatttgggttaatcctggatcacccccgattttggttaccccatcattctgataacaaaacgggactccccttggcccccttacatgtagaagtataacccttttaattgtaagccccctgaatggttttgggctgtgtcatattcagtatgctaaggttgtctatatagcataggcattggaaacaaaaccttttgtgacaatgaacttaacatggtctattgattttgaatgttttaggtgatttggtgttgnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="31295" stop="32273"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31595" g_stop="31972" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="379" polyA_stop="412"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U343855" ref_strand="-">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343855" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="31595" e_stop="31972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTCACCTGGGACTCCAAAGTGCTTGCTTTGCGTCCACTTTGGATTTATCTCAGCAATCACATCAGTTGCGGAAATTGCTGAACTGAAAAAAAAGAAGAGCTGCAAGACAATTAAAACGGGATTTGGGTTAATCTTGTATCACCGCCGATTTTGGTTACCCCATCATTCTGATAACAAAACGGGACTCCACTTGGCACCATTACATGTAGAAGTATAACTCTTTTAATTGTATGCTCTCTGAATGGTTTTGGTCTGTGTCATATTCAGTATGCTAAGGTTGTCTATATAGCATAGGCATTGGAAACAAAACTTTTTGTGACAATGAACTTAACATGGTCTATTGATTTTGAATGTTTTAGGTGATTTGGTGTTGGAG</genome_strand>
        <mrna_strand>CGTTCACCTGGGACTCCAAAGTGCCTGCTTTGCGTCCCCTTTGGATTTATCTCAGCAATCACATCAGTTGCGGAAAATGCTGAACTGAAAAAAAAAAAAAACTGCAAGACAATTAAAACGGGATTTGGGTTAATCCTGGATCACCCCCGATTTTGGTTACCCCATCATTCTGATAACAAAACGGGACTCCCCTTGGCCCCCTTACATGTAGAAGTATAACCCTTTTAATTGTAAGCCCCCTGAATGGTTTTGGGCTGTGTCATATTCAGTATGCTAAGGTTGTCTATATAGCATAGGCATTGGAAACAAAACCTTTTGTGACAATGAACTTAACATGGTCTATTGATTTTGAATGTTTTAGGTGATTTGGTGTTGNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327424" ref_strand="+" ref_description="SGN-U327424        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>aaaattttgatgttttagtgccacaagttccattgcttatgctggctgctaaaggggatgatgattatcgagaattctactctctttccaagaggaaaatttctcgcagaattttcctcccagaagctagagggaaactctgtttaccaacacagggatggcttttcacggtgaactatagagcatttacaggagagatgactttgttgcaccctttctcacgcgtccaaattcagcttcctccgcctactggcttgagagatgaggaatcaaaacgtccctacgtgactatcaaccatgttgtattatctgctagcccatccgtaacaactgactatgttctgataatttgctatggacggcctacataccgtttggctctttggcgacctggagacctctgttggaccaaaattcctactctcgaagaaacttatgcatattaccatatgatccaatacttcaatggacaactttatatcaacaaagggcggtggctagtttcagctattgacatcccagagcctagtaatcctcagcctattgtaaaacaacgagaggttgttcagatggtgggtttatcgaatcacacaaaccagtccgctcactttctcattgaagtgtcaggtgaactattatttgttcaacaattgatgattgtgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="32213" stop="33476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32513" g_stop="33176" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U327424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32513" e_stop="33176"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAACCAGTCCGCTCACTTTCTCATTGAAGTGTCAGGTGAACTATTATTTGTTCAACAATTGATGATTGTGAA</genome_strand>
        <mrna_strand>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAACCAGTCCGCTCACTTTCTCATTGAAGTGTCAGGTGAACTATTATTTGTTCAACAATTGATGATTGTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339504" ref_strand="+" ref_description="SGN-U339504        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 | chr5:26708530-26709714 FORWARD | Aliases: MUD21.9, MUD21_9(evalue: 6e-05, score=44.7) genbank/nr: F-box(evalue: 3e-05, score=52)">
      <seq>tttttttttttttttttttaagaaaaagttgaggataaagaaatataaaaaaaatacagaaacagttaatgtcaaatgcaatagaagtgaaaacgtctaatctatttcgtaatatttggtgtccaaatcaacttgtaccaccaagaattgatcacatgagatcaacaaactgttttttgcatcaaacaacatataaaagacacacaaaaccaaaacaattcagagaaagctcacaacgcattttgatatcagaatgatggggtaacccaaatcgccggggatacaatattaaaaccagaaatgccttgattcaagggttcaatggtttcatcttcgacattgtaagcccctatttttcttgaatcatattctttggggtacacacgtgtccaatcataggtaaaatatatatgattaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="34047" stop="33036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33755" g_stop="33336" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U339504" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33755" e_stop="33336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGATTCGTTTATATAAGAAAAAGTTGTGGATAAAGAAATATAAAAAAAATACAGAAACAGTTAATGTCAAATGCAATAGAAGTGAAAACGTCTAATCTATTTCGTAATATTTGGTGTCCAAATCAACTTGTACCACCAAGAATTGATCACATGAGATCAACAAACTGTTTTTTGCATCAAACAACATATAAAAGACACACAAAACCAAAACAATTCAGAGAAAGCTCACAACGCATTTTGATATCAGAATGATGGGGTAACCCAAATCGCCGGGGATACAATATTAAAACCAGAAATGCCTTGATTCAAGGGTTCAATGGTTTCATCTTCGACATTGTAAGCCCCTATCTCTCTTGAATCATCTCCTTCGGTGTACACACGTGTCCAATCATAGGTAAAATATATATGATTAGGT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTAAGAAAAAGTTGAGGATAAAGAAATATAAAAAAAATACAGAAACAGTTAATGTCAAATGCAATAGAAGTGAAAACGTCTAATCTATTTCGTAATATTTGGTGTCCAAATCAACTTGTACCACCAAGAATTGATCACATGAGATCAACAAACTGTTTTTTGCATCAAACAACATATAAAAGACACACAAAACCAAAACAATTCAGAGAAAGCTCACAACGCATTTTGATATCAGAATGATGGGGTAACCCAAATCGCCGGGGATACAATATTAAAACCAGAAATGCCTTGATTCAAGGGTTCAATGGTTTCATCTTCGACATTGTAAGCCCCTATTTTTCTTGAATCATATTCTTTGGGGTACACACGTGTCCAATCATAGGTAAAATATATATGATTAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339505" ref_strand="-" ref_description="SGN-U339505        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|53793082|dbj|BAD54292.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] (evalue: 9e-05, score=50.8)">
      <seq>tggacacgtgtgtactccgaaggagatgattcaagagagataggggcttacaatgtcgaagatgaaaccattgaacccttgaatcaaggcatttctggttttaatattgtatccccggcgatttgggttaccccatcattctgatatcaaaatgcgttgtgagctttctctgaattgttttggttttgtgtgtcttttatatgttgtttgatgcaaaaaacagtttgttgatctcatgtgatcaattcttggtggtacaagttgatttggacaccaaatattacgaaatagattagacgttttcacttctattgcatttgacattacctgtttctgtatattctttatagttctttatcctcaactttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="33064" stop="34031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33364" g_stop="33754" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="391" r_length="391" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U339505" ref_strand="-">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33364" e_stop="33754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACACGTGTGTACACCGAAGGAGATGATTCAAGAGAGATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTAACTGTTTCTGTATTTTTTTTATATTTCTTTATCCACAACTTTTTCTTATATAAACGAATCTAAAT</genome_strand>
        <mrna_strand>TGGACACGTGTGTACTCCGAAGGAGATGATTCAAGAGAGATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTACCTGTTTCTGTATATTCTTTATAGTTCTTTATCCTCAACTTTAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343563" ref_strand="+" ref_description="SGN-U343563        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>taaaactttccggagatttggctggccggaaaaaggtactacccctccctctattttccgtttggttagttgctcatcgtccatgatatttagctattaatgtgaaaaatggttcattccgtgttattaaccaatatgaatgaatctatacatccagttgttctctagctttcgatttaaaatagtttgaaagctttcaagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="34910" stop="34106"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34610" g_stop="34409" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="202" r_length="202" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="203" polyA_stop="213"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U343563" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>202</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34610" e_stop="34409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACTTTCCGGAGATTTGGCTGGCCGGAAAAAGGTACTACCCCTCCCTCTATTTTCCGTTTGGTTAGTTGCTCATCGTCCATGATATTTAGCTATTAATGTGAAAAATGGTTCATTCCGTGTTATTAACCAATATGAATGAATCTATACATCCAGTTGTTCTCTAGCTTTCGATTTAAAATAGTTTGAAAGCTTTCAAGT</genome_strand>
        <mrna_strand>TAAAACTTTCCGGAGATTTGGCTGGCCGGAAAAAGGTACTACCCCTCCCTCTATTTTCCGTTTGGTTAGTTGCTCATCGTCCATGATATTTAGCTATTAATGTGAAAAATGGTTCATTCCGTGTTATTAACCAATATGAATGAATCTATACATCCAGTTGTTCTCTAGCTTTCGATTTAAAATAGTTTGAAAGCTTTCAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321175" ref_strand="+" ref_description="SGN-U321175        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:16943887-16944716 FORWARD | Aliases: MDH9.2, MDH9_2(evalue: 6e-29, score=125) genbank/nr: gi|51536556|gb|AAU05516.1| At5g42330 [Arabidopsis thaliana] >gi|48958483|gb|AAT47794.1| At5g42330 [Arabidopsis thaliana] >gi|51970798|dbj|BAD44091.1| unknown protein [Arabidopsis thaliana] >gi|42568267|ref|NP_199048.2| expressed protein [Arabidopsis thaliana] (evalue: 5e-27, score=125)">
      <seq>gagcgcttctccctactttagggccaaattcaaactcatctaaaaaaggacaaaaattgacaacaataaactattgccgtagaagaacgctcaaagcactaagccaaaaaaaaaacacaatttttttctcctctttcataattttccgccgcttattgaatcttgagttctgatttggttttcatgtccaagatgatgatgagatctagccgtaaacccccacttcctactagatctcctgttggaattcggaatcgtcgtgttcttcaatctactccaaacctcattcgaaccccaccagattctttgaaaactcagttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaagtcctttattcgaaaggggcaagttttatgaagagtactctgctagaaggaatgagagattgaagaggaagaagggtggtgacactgtggatgagaagaaaccagtgtatgatttgggagttagagttgaatcttccaagaaaaaaggagagcctaagatgttccaaagcgctaggaaatcagttgttgcttctacaccaatagcagagaggagagaaacttcaaggtatttcttgagaagcacagctagtaaggagaacaggaagcctcctttaccaatcagcatggacaaatctgtggggttatcagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacaaaaaagtaagaagtagtagtttttggatgatttggatggcaaatgtagttagttatgtcacaaaattttcagattagggtgtttgatgtttgaagtacaacgaagaggctatgtagctgatagcttcagttcactttcatggctgattgtaatatgaattttcttttttgcattgcttatcgttaagtttattgtgcatgtattgatgcaatctttacattgcagaaccaagataagtctattgaactacttgcattgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccggggggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="37020" stop="39622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37320" g_stop="37620" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38496" g_stop="39322" g_length="827"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="1128" r_length="827" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1129" polyA_stop="1158"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U321175" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1128</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37320" e_stop="37620"/>
          <exon e_start="38496" e_stop="39322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAGGTATTTTGTATAATTAGTAGTAATACTGTGTATAGAGCTGGAAAGACTAAATTTTTGAGACCCCCTTTGCTTTGTTCGAGTTTTGTGCGTGTTGGAATGAAGAGAAATGGGTGTTGACTGTTGAATTTTGTATGATTAGTACTGTATTTAGAATTGGTAGACCAAAAGTTGAGACCCCGTTTGCTTTTTGAGTTTTTTTGTGTATTGGAATGAAGAGAAATGGGTGTTGACTGTTGAGTTTTGTATGATTAGTATTGTAGTTAGAGCTGGAAGACGAAAAAATTGAGCCTTTTTTTTTTTTGAGTTCTGTCTGTATTGGAATGAAGAGAAATGGGTGTTAACTATTGAGCTTTGTATAAGTACTGTATTTAGAGTTGGAAGGCAAATTTGAGACCCCTTTTATATTTTGTATGTATTGGGATGAAGAGAAACGAGTGACCGAGTTGGTTGAGCCTGGGATTTCCCTTAGGGTCCTGGGTTCCATATCACCTGTATGTGTTTCTAGGTCGAGCTTGTCACGCGGGGCTTTTGTTGCCTATTGCGGTTTATATTTCCTTTGTTGTTTGCGCACTAACAAAAGGGTAACAGCTGTGGTTCCCTTGTTATGAAAACAAAATGGGTGTTTGAGATTTGTTATATACCTGATTTAGGCTTAGTTGTTGTTATTGTGTTGTTCTTCTTTTCAGGTTTTTGAATATAATCAAGGAACAAGTGGATAGTTTTGAAAGAATTAGCTTAATTTTGAATTTAAACAGGGACAAACATCCATGCTTCGTATAGTAGTTGAAACTATTTGCAAAGTTTGAGAGCCCCCCTTAATCATCTCAATTTTGATGGTCTCTCTTTTTTTGGGCTAAATTTTAGATTGTATGCAGATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTGAGA</genome_strand>
        <mrna_strand>GAGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337311" ref_strand="+" ref_description="SGN-U337311        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttttttctcctctttataattttccgccgcttattgaatcttgagttctgatttggttttcatgtccaagatgatgatgagatctagccgtaaacccccacttcctactagatctcctgttggaattcggaatcgtcgtgttcttcaatctactccaaacctcattcgaaccccaccagattctttgaaaactcagttgcctaagagggttagcagcagtgttgaagaatgggaacttcgtccagagtaccataccatttcttgtgaattaagggctttgtccaaaatggtgcagaacaaatttggtaacgaggatgtgaatgctgctgataactctgattcattgaatgcaaagagaggagaactacagccagaagagttcggaaaatttgagttggaatgatttccccccttatagacgtttgttgaacaaaaaagtaagaagtagtagtttttggatgatttggatggcaaatgtagttagttatgtcacaaaattttcagattagggtgtttgatgtttgaagtacaacgaagaggctatgtagctgatagcttcagttcactttcatggctgattgtaatatgaattttcttttttgcattgcttatcgttaagtttattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="37140" stop="39555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37440" g_stop="37620" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38496" g_stop="38671" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="356" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38672" i_stop="38984" i_length="313">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38985" g_stop="39255" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="627" r_length="271" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U337311" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37440" e_stop="37620"/>
          <exon e_start="38496" e_stop="38671"/>
          <exon e_start="38985" e_stop="39255"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAGGTATTTTGTATAATTAGTAGTAATACTGTGTATAGAGCTGGAAAGACTAAATTTTTGAGACCCCCTTTGCTTTGTTCGAGTTTTGTGCGTGTTGGAATGAAGAGAAATGGGTGTTGACTGTTGAATTTTGTATGATTAGTACTGTATTTAGAATTGGTAGACCAAAAGTTGAGACCCCGTTTGCTTTTTGAGTTTTTTTGTGTATTGGAATGAAGAGAAATGGGTGTTGACTGTTGAGTTTTGTATGATTAGTATTGTAGTTAGAGCTGGAAGACGAAAAAATTGAGCCTTTTTTTTTTTTGAGTTCTGTCTGTATTGGAATGAAGAGAAATGGGTGTTAACTATTGAGCTTTGTATAAGTACTGTATTTAGAGTTGGAAGGCAAATTTGAGACCCCTTTTATATTTTGTATGTATTGGGATGAAGAGAAACGAGTGACCGAGTTGGTTGAGCCTGGGATTTCCCTTAGGGTCCTGGGTTCCATATCACCTGTATGTGTTTCTAGGTCGAGCTTGTCACGCGGGGCTTTTGTTGCCTATTGCGGTTTATATTTCCTTTGTTGTTTGCGCACTAACAAAAGGGTAACAGCTGTGGTTCCCTTGTTATGAAAACAAAATGGGTGTTTGAGATTTGTTATATACCTGATTTAGGCTTAGTTGTTGTTATTGTGTTGTTCTTCTTTTCAGGTTTTTGAATATAATCAAGGAACAAGTGGATAGTTTTGAAAGAATTAGCTTAATTTTGAATTTAAACAGGGACAAACATCCATGCTTCGTATAGTAGTTGAAACTATTTGCAAAGTTTGAGAGCCCCCCTTAATCATCTCAATTTTGATGGTCTCTCTTTTTTTGGGCTAAATTTTAGATTGTATGCAGATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTG</genome_strand>
        <mrna_strand>TTTTTTTCTCCTCTTT-ATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAG.........................................................................................................................................................................................................................................................................................................................AGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326805" ref_strand="+" ref_description="SGN-U326805        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative, similar to DPM1 from Homo sapiens (SP:O60762); member of glycosyltransferase family 2 | chr1:7126785-7128735 REVERSE | Aliases: None(evalue: 1e-109, score=392) genbank/nr: gi|18394881|ref|NP_564118.1| dolichyl-phosphate beta-D-mannosyltransferase (dolichol-phosphate mannosyltransferase) (mannose-P-dolichol synthase), putative [Arabidopsis thaliana] gi|25317943|pir||H86338 protein F2D10.6 [imported] - Arabidopsis thaliana gi|8886954|gb|AAF80640.1| F2D10.6 [Arabidopsis thaliana] gi|29028862|gb|AAO64810.1| At1g20575 [Arabidopsis thaliana](evalue: 1e-107, score=392)">
      <seq>gagatcaacaaaatgggggagaagaacaagtacagtataattatacctacctacaatgaacgtctcaatattgctctcatcatctacctcgtcttcaagcatctcacggatgttgattttgaaataatagtagtggatgatggaagtccagatggcacacaggatattgtcaaacaattgcagaaagtatatggagaagatcgtattttattaagacctcgacctcggaaacttggtctaggcactgcgtatattcatggtttgaagcatgcctcaggcaattttgttgttattatggatgcggatctttctcaccatccaaaatacctgccaagatttatcaagaaacaaatggagacaggtgccaatatagttactggaactcgatatgtttctagtggtggtgtccacggatggaaccttatgcgcaaattgacgagcaggggagccaatgtccttgcacagacactactttggccgggtgtatcagacttaactggatccttccggctgtaccagaagtctgcactagaagacatcataagctcttgtgtcagtaaaggatatgtttttcagatggagatgattgttagggcttcaagaaaaggttaccgcattgaagaggttccaattactttcgttgatagagtatttggaagttctaagcttggaggatctgaaatagtggagtatctaaagggccttctgtatcttctggttacaacttgatatgtttaacaagctgcatgaccagagaatctgaagacttgagttgttttgcaacctgtgacattctgaagacttgaactaggaccatataacaaattctttttctttttgcttcagctgatgtaaccaaaactttgatgaatgagctattatgtattggaaagagtgttgctgaagtaatttccaatgctactttggtttattttgtggatgatgctttccatttttggataatacacttgttcaagttatctgtgaatattaacttgcattttccagcttatataaatgtctacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="43984" stop="39279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43684" g_stop="43578" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42221" g_stop="42122" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="207" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98">
            <donor d_prob="0.418" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42023" g_stop="41990" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="241" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88">
            <donor d_prob="0.909" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41901" g_stop="41825" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="318" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543">
            <donor d_prob="0.903" d_score="1.00"/>
            <acceptor a_prob="0.679" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41281" g_stop="41256" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="344" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77">
            <donor d_prob="0.773" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41178" g_stop="41014" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="509" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="40581" g_stop="40467" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="624" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="40466" i_stop="39984" i_length="483">
            <donor d_prob="0.541" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="39983" g_stop="39579" g_length="405"/>
          <reference_exon_boundary r_type="cDNA" r_start="625" r_stop="1029" r_length="405" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U326805" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1029</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43684" e_stop="43578"/>
          <exon e_start="42221" e_stop="42122"/>
          <exon e_start="42023" e_stop="41990"/>
          <exon e_start="41901" e_stop="41825"/>
          <exon e_start="41281" e_stop="41256"/>
          <exon e_start="41178" e_stop="41014"/>
          <exon e_start="40581" e_stop="40467"/>
          <exon e_start="39983" e_stop="39579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCACGTAAACACTCTTTCTCTCTATCCCGTTTCTTTTTTTTTTGTGTGTGTGTGTGTGATCACTGCTATTAAAGTTTCTGTCTTTTTGGAAAATATTTGCATCTGGAAAAATGGGTTTTATGATTTATTAGAAAAGAATTGTTTTTTGGTTTTTATATTCGATCTTCTGTAAGCAACTTAAATTTGGCATGAATTGGAGCTGTGTAGAGGAAATTGACTAGAATTTTGTTGAAGTTGTTGCTATTAAGATCGTTTGTGTAATATCCCAGCATTGATTAATTGAATTAATCTATGATCTATGTGAAAACGGTTATCTTTATCATCAAAATCTAGGAAAAGGTAGTCTTCAATTTTGAACTGAATAGGAGAGGAGAAATTAGAAAGGAGTATAGAATGAAATGGAGAAGAAAGTAGATAGAGTTAAGAAAAGAGGCAAGAAAGTGTAAAGAAGAAGCGAAACGAAACAGAGAGCAGAGAGGAAGATCGGGTGATAGAGAGATTAGATGACCAGTATAGGTATAGAAGGGAGAGAGGAATGAGCATTTTCCACATTTTCAGAAGCTTTTTCTACCCCTAGCTTCTATCTCTTTGTGTGTTTGTGAGTGAGATGTTCAGTTACAACTCATGTGCCACCCATGTTCTCACAACTATTTGTGGATTCATGACAGTTTGATTTAAATTTGAGTTAGATAGGCATGAGAATTTGTAAAGATTGTATCTTTTTGGAATCTAATATAGATGGTTGGGAGCTTTCGTGAGGATTGTAACTTTTTGAGGGAATCCATTGATTAGTAGGCTGGAAAATAACGTGGCTTACACCCAAATTCCAAGTGATTGTTGGCAGATATCACTTATCAGGAGCAAATTTGGAAAGGGCTATGTCAAAACATTTTACAGTTCTTGGAATCAATTTTCACCATTTATAAATTATTTTCGAAGATGATCTTTCTTTTTATAAGGAATTTGGGGGATCTATGCATTAATTTTTGTATGGATGAGGAGTTAGGTTCTGTCCTTTACATGCTTACCATTTTTTTCATATTTATTTGCTCATTGCTAATAATATTGATGCTCAACCACGAGAGAAGACATTGTTATTGAGATTGATTTATATAGATGTCAGGTCCTGTTTTATTCGACCACATTGTTGTTTATGACGCAAGAAAAATGTACACCATGTTCATGACATCATTTAGTGTCTTTGAGGGGGATGTTCCCATTTTGAGGACTAAAATTCATTTTTCCCTTGTATTTGAATTAAATCTCAGCTTATTTTTTCATATGCAATATTTAGAGGTGATAAAATCATGTAAATGCATAAGCAGATTCTTATTGCAAAATTTGTTTTTTCTTGACTCAGGGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATTGTTAGTAGCTTCTTACTTCATCCAGTTGTTGCACATTATGCTTCCCTGATCATACCAGTTTATCATCTCACTTTGCTCATTTCTCTTGTTTACTACAGTTATTAAGACCTCGACCTCGGAAACTTGGTCTAGGTACTTCCATTTTATTATGATAACCATGATTTCTTTTTCATACGAAGATGTTAGCCATGAATAGTCTCTGACATTCCTCTTATCTCAGGCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCATGTAAGTATGATTGAAGATAAGGGCCTCGTTTGGTTTCCTTTTATATTTTGTCTTTTTGTTGTGAAATGTCCTTTATCTATTTGTTGGAACATCAAGTGTTTTTGTTGGGAAAGGAACAGAAAGGGGATATGTGGTGTGCAGTGGGTTTTTTTTATGCTTGATGTTATGGGAAGAAACGATTCAAATAGCTCTGGGTGTGTATATCGAATAATTAAATTTATTTTTTGGGTTAATCGTTATTTTTCACGCCCTCATTGTTGCACTATTGCATATCCTGTCTGTGCCTGCGGTGATTTAGTTCCCCCAGCATCCAGCACCCTCAATAGTAAGAAAAAGGGCAATTTGTTCCTTGGACAACTGAAACTTGATAGTGTAGGCCCACTTCATCAAAACTTAAAAGTGTAGGACCAAAAATCAGTGACTTCCTGAATTTAATTATGTGAGCCTGTATATTGTTAGTCTGTCTCATAAAATATTAGTCTCTATACCAAGCTTATTTGATTTTAAATTTTATGGTTGATTCTTTTATACTTTTTTTTACAGCCAAAATACCTGCCAAGATTTATCAAGTGAGTATTTGTTTTCTTAAATTTCAGTTTTCTTGTAATGGTGAGCACTAGAACTATAATTTAAATTTTATGTCTAGGAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCGGTATGTTTTAATTTGGAAGTAGAGGAAAATCTGTGGTTCGATGAATTGTTATGAGCATATTTAGGAAATGTACTTTGCATAAACCATAAGGGGTTGCTTAGATTAGGATTACTTCCTAATATCTGGGACTTCGGCGTGGAGATTATAAATCTAATGGAATGCTGGATTGGGAGATAATGGTTGTAATTGTTCAAGACTTCCTATTTTTCTACAAACTTATAACTAAAAGGAGGGAAGTCCACATAGAAAAGGAAAAAAGACACTGTACTTTTATATGGAAATTGATTTGGTCTCAGGAATCATTGTTTTGTGTGATTTTTTGTTCTTAAGAAACTGAATGATCATCACGTGTTTTACTCTTATATACTCTAATGCTCACAATTAATGTAATTTGTATAATCATTGTCTGAAACTGAATTGCTTGTTTTGAAGGCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAGGTAGCTAAAGACATGGATTTACTGTTGAATACTAATTAATCCACTGCATTGACATTTGTTTGGACAAGAAAATCTTGTCTCTTATTGCATCGTGCTACTAACTGCATAATTTATGATGTCCATAGTGCTATTCTAATATTAATAATGATGCAAACTAATGGCAGTTCTTAAGCATTTAGTTGGTTATATGCTCTCAAACTGGGAGCTTTGTTGGTTGCTATCCCCCAGTTGTCTCTCATCCTAACATTGTATTATGCGGCTGTAAGCCATTTGATTTTTCTAAGAGAGCTCTCTTCATTATTATTGTTGTTTTTCCTGAGTCAATTGCACCCCCATCCCCACTCCGTGTATTTTTTTTCTTTTTCATCTCAGTTCTTCACAATAGTCACCTGCAACCACTTCATTGTTTGGTTTTATTTTTATGATGTACTTTTCATCTTTCCAAAGGTAGCCTGAATTCAAGTTGGATTTTACTATTTGTAGGTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</genome_strand>
        <mrna_strand>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT..................................................................................................TTATTAAGACCTCGACCTCGGAAACTTGGTCTAG........................................................................................GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAATACCTGCCAAGATTTATCAA.............................................................................GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319421" ref_strand="+" ref_description="SGN-U319421        Tomato 200607 #1 [13 ESTs aligned] arabidopsis/peptide: | Symbol: None | BTB/POZ domain-containing protein, contains Pfam PF00651: BTB/POZ domain; contains Interpro IPR000210/ PS50097: BTBB/POZ domain; similar to MigA (GI:1841872) (Dictyostelium discoideum) | chr2:13044315-13048761 FORWARD | Aliases: None(evalue: 1e-156, score=491) genbank/nr: gi|62319919|dbj|BAD93995.1| hypothetical protein [Arabidopsis thaliana] (evalue: 1e-154, score=491)">
      <seq>gagggagagtgtttcttcagtggtctgcttaaaagatgttcctcttgaggcattcaagattatgctagaattcatgtacagtggagaacttaataaagaagctactgcaggaatcaataccttgttacttcagctacttttactagccgatgagtttggggtgacacttcttcatcaggagtgctgcaaaatacttctggagtgcctctcagagggatggagttctcctattggaagaaggattcagtatgcccaattcttcaagtgatatcatcgattccctcatgtaagctcattgaagaaacctgtgagaggatattctccatgcacttcgattattgtacaactgcaagcattgactttgtcatgttagatgaatcaagttttagcaatatccttcagcatacagatttaacagtgacatctgaagagagagttctcaatgccatcttgctttggtgcttacaagcaagagaactgtatggatgggaagcagtaaacgaattgatggtaaattcaacacctgagatgctttttggagagagacttgagtctctaaatgaatttctgcatcttgtgcggttccctttactttcacctgatttgctgaataagtttgaacagagtagccttagccagcaaattcccacttttgaccatctggttaaagaggcattaagatttctggaatttgagatcaccgattttcaaggcaaccagagatttcagcatagaaaatcaagttttaaggagctgctctacatatgcgatggagatagcaacggggtcctttattttgctggcacatcatatgggaaacaccagtgggtaaatcctgttttgtccaagagagtaattatcacggctagtagccccatttcaagatgcactgatcccaaggtgttggtgtcaaggaacttccagggtacatctgttgctggacctcagatggaggggggaagaaacacttcgtggtggatggttgatattggtccggatcaccagctcatgtgtaactactacacattgagacaggatggatcaagagcatttatcagacgttggaaccttcagggctctttggatgggaaaagctggacaaatctgagagtacatgagaatgatcaaactatttgcaagccaggtcaatttgcatcatggccagttactggttcaaatgcattacttcctttcagattctttcgagttctcatgaccggtcctactacagacgatactaacccctggaactgttgcatctgcttcttagaactctatggctattttcgttagctcggtgttggtttgaacattagttttatttttcttcatgaaacccttcatttacagtcaaaatgttgtatggttttcgtatttctcaatgatgtttacagtgtagtgttgtcatctctactcttgcctgttacatgtttttgagtttatgatcatgtttaatatcagaatatgaattcaacatctattatatacataaaaatagctagtacatttcgtgtgcatgatcatctacgtcattggcattttgcagagattagggtatggtatatctgacattaattttagtaatttttgttacgtatacatagtaaatgttgaattaatcacatgaaaggtggaaattatattttgactttggcaccagcaaaagcattggtgtagttgacctgtagttcactttaataataaaatggtaattaacggtcaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaancncnggggggncccgggccccgggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="57561" stop="53253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57261" g_stop="57048" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="214" r_length="214" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57047" i_stop="56838" i_length="210">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56837" g_stop="56812" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="240" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56811" i_stop="56705" i_length="107">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56704" g_stop="56543" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="402" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56220" g_stop="56008" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="615" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55903" g_stop="55856" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="616" r_stop="663" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55741" g_stop="55683" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="722" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55458" g_stop="55332" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="849" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55331" i_stop="55208" i_length="124">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="55207" g_stop="55133" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="924" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="54961" g_stop="54881" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="925" r_stop="1005" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.684" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="54451" g_stop="54383" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1006" r_stop="1074" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="54201" g_stop="53552" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1075" r_stop="1724" r_length="650" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1748" polyA_stop="1767"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U319421" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1724</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57261" e_stop="57048"/>
          <exon e_start="56837" e_stop="56812"/>
          <exon e_start="56704" e_stop="56543"/>
          <exon e_start="56220" e_stop="56008"/>
          <exon e_start="55903" e_stop="55856"/>
          <exon e_start="55741" e_stop="55683"/>
          <exon e_start="55458" e_stop="55332"/>
          <exon e_start="55207" e_stop="55133"/>
          <exon e_start="54961" e_stop="54881"/>
          <exon e_start="54451" e_stop="54383"/>
          <exon e_start="54201" e_stop="53552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGGAGAGTGTTTCTTCAGTGGTCTGCTTAAAAGATGTTCCTCTTGAGGCATTCAAGATTATGCTAGAATTCATGTACAGTGGAGAACTTAATAAAGAAGCTACTGCAGGAATCAATACCTTGTTACTTCAGCTACTTTTACTAGCCGATGAGTTTGGGGTGACACTTCTTCATCAGGAGTGCTGCAAAATACTTCTGGAGTGCCTCTCAGAGGTAATCTTGTGATTTTGACCTCTTTCTAGACATACTTCCTCTTTTGTTGCTAAACCTGTATCTGTCGTGTGCATGTTGAAAGTGCTAAATGTCAGACTACAATTAAAAGAGTGGAGAAGTGATGCGGTTCGGAGTTGTGAGCGTGAGCAGAGCCGTTTTATGAAAATGAGATATAAATATTAATACCTTTCATCTATACATTATATGCAGGGATGGAGTTCTCCTATTGGAAGAAGGTTCAAGAACTTTTTCTATTATGCCAAGTTTAGTGGACGAGGAAGAAGACACTTTGGTAAAGTCTTTGGATCGTGATTGTGATACTAACTATTGATCTTTATTGCAGGATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAGGTGATCATCATTTCCTCCTTATACATGATAAAATTATGAAGAGTGTTGGGATTTTTTGTACTTAAATCTCGATTCTCTAGTTGGAGTAGATGTCTGCAAGGGGGGATATCTTTTGCGAACTTCAACAAGTGCAGTATAATAGTGGGTCATATTTAATGTTTCATCCCTTGGACAGAAGAGTTCAGATGATTAGATCTTTGGAAATATTCTTGATAAGGAAGAAAATTATAAAATTCACTTTATTTAGAGATGCACTAGTAAGTTTTATATCCCATTGAATTGACAGTATATCTCTCTCACGATAAACGATTTCATTTTTCAGCATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAGGTATATACCTTGAAATTTAGGAGCACCTCACTTCCCGGTCATTCAAGATTAATGTATACTAAAGTTGGCTCTATTAATTGTTGGCTTTGATGGGATTCCTGCAGTTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTGGTACGTTGCAATCCTTTAGAGAAAGATTCCATGGCATGGACTAACATTTATAATTTTTCTTATGTTTTGTCATTTTGATAACTTTGGAGTATTAAATCATATACTATTTAACAGGTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAGGTGAGTATACTTGAAAGGTTTTATTCAAACCACCCTGTGACCGTAGTTATATATGGTATTGCAATATCCTCAAGGGAGTGACCTAGTATATTACGCGTCTAATAAATGAAGGAACTATTTGTCGGTCCGTATGCATGCTAAAACCTGTCTTTCAATTGGAGCATGACTATACAAAATGTCTAAAAGCTGATGCTGATGAAGTTCTCTGTATCTTATGATAATAGATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAGGTAAATCCACAGCTGCAAAAAGCAATTAACCTTCCTCCTTTTGACTTGCTACCGTTCTAAAAAATATACTATTGTTTACCATCTCATTCTGTCATCTGTTTAACATTGGTAATTCATGTTTCAGAGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAGGTATGAATAGGATGACATTCAATTATTGTGAAGTATCTTCTCCTTTTAAATTAATTTGAGAAAAAAAGAAAGAAATATTCTTTTGCTCTCTCTTTTTCATTGATGGCGTTAAGGACACAAAAGAGTGTGTTAGCTCCATAATATGAACGATGAAATTTTTTTTGGTCTCAGGGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAGGTTAGATTTATTGGTTTGTGTATAATTTAATTGTGTGTACTCAAGGGAGCTGAAAGAAGTTTTTGTAAAATAAGATGTATGTTGTAACTTAGACAATCACTTCGTCCGTGCTGATTCTCAGATTCATCTGTATTTTTAATTGACTTGTGAAAATGAAACATTTAAAATTGAACATCGATAACTTGCTTTTCTCATTGTAAGGGCATTGCACGATATCATGGTTGTCTAGAGTAGTGCTGGTCAGTATACCTTGGATCAAGATATTGAAAGTGAACACTTATCTCTGCTCTTTTGGTTTCGTTAAAAGTACTCTCTCTCGTTTATAGCACACACAAACTGCATGTCAATATCCCTGATTGATTTTCCCATTTGGTATTCAACTAGAAGATGAAACATCTGACGCATTTAATATTTGATGAATCGATGCAGCTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAGGTAAGCAGCTCACTCAACATTCACAAACCAGTGTACACATTATCTCTAGTGGATCTGTGGATGTACTCGTAACTCGTCTATAGATTATACATATATACATACCAACATCTCCATTTTGTAGAACTGAAACGGTGTTAAAAGTGGCGTTCTAATAACAATTTTTGGTGAATTGCATTCTCAGGGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATATTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGCAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAAT</genome_strand>
        <mrna_strand>GAGGGAGAGTGTTTCTTCAGTGGTCTGCTTAAAAGATGTTCCTCTTGAGGCATTCAAGATTATGCTAGAATTCATGTACAGTGGAGAACTTAATAAAGAAGCTACTGCAGGAATCAATACCTTGTTACTTCAGCTACTTTTACTAGCCGATGAGTTTGGGGTGACACTTCTTCATCAGGAGTGCTGCAAAATACTTCTGGAGTGCCTCTCAGAG..................................................................................................................................................................................................................GGATGGAGTTCTCCTATTGGAAGAAG...........................................................................................................GATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG..................................................................................................................................................................................................................................................................................................................................CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG........................................................................................................TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG..................................................................................................................GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG................................................................................................................................................................................................................................ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAG............................................................................................................................AGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG...........................................................................................................................................................................GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG.....................................................................................................................................................................................GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATGTTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATGTTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGTAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330094" ref_strand="+" ref_description="SGN-U330094        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | BTB/POZ domain-containing protein, contains Pfam PF00651: BTB/POZ domain; contains Interpro IPR000210/ PS50097: BTBB/POZ domain; similar to MigA (GI:1841872) (Dictyostelium discoideum) | chr2:13044315-13048761 FORWARD | Aliases: None(evalue: 5e-06, score=48.1)">
      <seq>ttgttcacctgccagacataagttattctgttcttcatgcacttcttcagtacatctacactggacatactcaggtgagtcccatctttcaggcaatttcaaattattatgcttccactaattgtctgcttaactttggataacatgcctattgctttttcattgttgagtttcaggaactaagaacagaaaaaatagttctttttactattcagagaaggaattaaatcaaaattttaaaatttgctctatgtgagttttgtgtataaaccaaattttctttatttttgtatttcttcctattgtctaatttttctaaagactactgactccagccaaatcttaaatcaaacgtaccaagcgtgacattatgcgtatagatataaatttgcaaggtattgttctatgcgacttttagtttacttgaatatttatctcatagctgctgattcactgctacatttgaacattgtagattttggagtctgatctctgctcattgaagtctttgagcttacaatataaagtgatgtcattggtgaggcaatgtgaagagatccttgagcgaattatgtctgataagcaactcgttgactcaactcagcttgttgacatattttatccaagctggcttcaatgcagcaaaacttttccttatgggttgccaattaatagagaaaggcttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="59024" stop="57737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58724" g_stop="58037" g_length="688"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="688" r_length="688" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U330094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58724" e_stop="58037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCACCTGCCAGACATAAGTTATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAGGTGAGTCCCATCTTTCAGGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCGACTTTTAGTTTACTTGAATATTTATCTCATAGCTGCTGATTCACTGCTACATTTGAACATTGTAGATTTTGGAGTCTGATCTCTGCTCATTGAAGTCTTTGAGCTTACAATATAAAGTGATGTCATTGGTGAGGCAATGTGAAGAGATCCTTGAGCGAATTATGTCTGATAAGCAACTCGTTGACTCAACTCAGCTTGTTGACATATTTTATCCAAGCTGGCTTCAATGCAGCAAAACTTTTCCTTATGGGTTGCCAATTAATAGAGAAAGGCTTGAA</genome_strand>
        <mrna_strand>TTGTTCACCTGCCAGACATAAGTTATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAGGTGAGTCCCATCTTTCAGGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCGACTTTTAGTTTACTTGAATATTTATCTCATAGCTGCTGATTCACTGCTACATTTGAACATTGTAGATTTTGGAGTCTGATCTCTGCTCATTGAAGTCTTTGAGCTTACAATATAAAGTGATGTCATTGGTGAGGCAATGTGAAGAGATCCTTGAGCGAATTATGTCTGATAAGCAACTCGTTGACTCAACTCAGCTTGTTGACATATTTTATCCAAGCTGGCTTCAATGCAGCAAAACTTTTCCTTATGGGTTGCCAATTAATAGAGAAAGGCTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345732" ref_strand="+" ref_description="SGN-U345732        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>tttttttttttttcaagtaaaagtatgaaaagcaagatttcacattccaacaaggtacatgacatgaaaaaacataaacaaagttttctcggtaacaaaagaactcaaacaccctccccccttccccccaaaacctgggggaacttatgttgttcatcaacaattgcattaaaaaaactgaacacgtataatattactgcaaggaagcagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="60882" stop="61692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61181" g_stop="61392" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U345732" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>212</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61181" e_stop="61392"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATATATATTCAAGTAAAAGTATGAAAAGCAAGATTTCACATTCCAACAATGTACATGACATGAAAAAACATAAACAAAGTTTTCTCGGTAACAAAAGAACTCAAACACCCTCCCCCCTTCCCCCCAGAGCCTGGGGCAACTTATGTTGCTCATCAACAATTGCATTAAAAAAACTGAACACGTATAATATTACTGCAAGGAAGCAGTT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTCAAGTAAAAGTATGAAAAGCAAGATTTCACATTCCAACAAGGTACATGACATGAAAAAACATAAACAAAGTTTTCTCGGTAACAAAAGAACTCAAACACCCTCCCCCCTTCCCCCCAAAACCTGGGGGAACTTATGTTGTTCATCAACAATTGCATTAAAAAAACTGAACACGTATAATATTACTGCAAGGAAGCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339248" ref_strand="-" ref_description="SGN-U339248        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: CYCB2;1 | cyclin, putative (CYC2a), similar to cyclin 2b protein (Arabidopsis thaliana) GI:509423; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain; identical to cDNA cyc2a mRNA for cyclin 2a protein GI:728518 | chr2:7671185-7673604 FORWARD | Aliases: T19E12.4, T19E12_4, CYCB2;1, Cyclin B2;1(evalue: 3e-37, score=152) genbank/nr: B-like(evalue: 7e-40, score=167)">
      <seq>agtggagtatgaaatgcttcgattcccaccatcaatgcttgcagctgctgctatctttactgcacaatgcactctcggtgtgtctaaggagtggaataaaacctgtgagaagcatagcagctatgtcaaagatcaacttttggaatgctcgaaattgatggtttctttccatcagaaggcagcaattgggaagcttagtggcgtgcaccgaaagtacagaacttctaaatatggctacgctattagatgtgaaccagcttcttttctattagaagcatggttttaggattgtctaggaggaacatatgatgaaaccgcatgcttgcagtagtatatgtgttcagtttttttaatgcaattgttggtgagaaacataagtgtgccccaagctctgggggaaggggagggtgtttgagttcttttgctactgagaaaacttcgtttatggtttttcatgtcatgaacattgatgttgttgacattattggaatgtgaaatcttgcttttcataaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="62093" stop="60904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61793" g_stop="61653" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61652" i_stop="61567" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61566" g_stop="61224" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="476" r_length="335" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="509" polyA_stop="528"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U339248" ref_strand="-">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U339248" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61793" e_stop="61653"/>
          <exon e_start="61566" e_stop="61224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTTGTAAGTATACTCAGGATTAACAAGTATCTATTCATTGACAAATCAGAGAGATGTTTGATTGTGTGTCCCTTGATTTTCTACAACAGGGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATAAGT-TGCCCCAGGCTCTGGGGGGAAGGGGGGAGGGTGTTTGAGTTCTTTTGTTACCGAGAAAACTTTGTTTATGTTTTTTCATGTCATGTACATTGTTGGAAT</genome_strand>
        <mrna_strand>AGTGGAGTATGAAATGCTTCGATTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTT......................................................................................GGAATGCTCGAAATTGATGGTTTCTTTCCATCAGAAGGCAGCAATTGGGAAGCTTAGTGGCGTGCACCGAAAGTACAGAACTTCTAAATATGGCTACGCTATTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTGTCT---AGGAGGAACATATGATGAAACCGCATGCTTGCAGTAGTA-TAT--GTGTTCAGTTTTTTTAATGCAATTGTTGGTGAGAAACATAAGTGTGCCCCAAGCTCT-GGGGGAA--GGGGAGGGTGTTTGAGTTCTTTTGCTACTGAGAAAACTTCGTTTATGGTTTTTCATGTCATGAACATTGATGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327874" ref_strand="+" ref_description="SGN-U327874        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: CYCB2;3 | cyclin, putative, similar to G2/mitotic-specific cyclins (B-like cyclin) from {Medicago varia} SP:P46278, SP:P46277; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain | chr1:7135063-7137263 REVERSE | Aliases: F5M15.6, CYCB2;3, Cyclin B2;3(evalue: 8e-37, score=149) genbank/nr: Cyclin,(evalue: 2e-39, score=163)">
      <seq>gtctgataagaaggtggagctagtgtcattcttcttgatagagctatgtctagtggagtatgaaatgcttcggttcccaccatcaatgcttgcagctgctgctatctttactgcacaatgcactctcggtgtgtctaaggagtggaataaaacctgtgagaagcatagcagctatgtcaaagatcaacttttggaatgctcaaaattgatggtttgtttccatcagaaggcagcaattgggaaacttactggcgtgcaccgaaagtacagcacttctaaatatggctatgctactagatgtgaaccagcttcttttctattagaagcatggttttaggattcactaggaggaggaacacatgaggaaactgcttccttgcagtaatattatacgtgttcagtttttttaatgcaattgttgatgagcaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="62142" stop="61026"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61944" g_stop="61932" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61931" i_stop="61832" i_length="100">
            <donor d_prob="0.945" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61831" g_stop="61653" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="192" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61652" i_stop="61567" i_length="86">
            <donor d_prob="0.680" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61566" g_stop="61326" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="433" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U327874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61944" e_stop="61932"/>
          <exon e_start="61831" e_stop="61653"/>
          <exon e_start="61566" e_stop="61326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTGATAAGAAGGTGTGTCAAACTTCTTTACTACATAGAACGAGTGTTACGAAGAAGTATAACAACATTCTGAATCACTACTCATACAACTTTTTGTTTCTGTTTAAATCAGGTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTTGTAAGTATACTCAGGATTAACAAGTATCTATTCATTGACAAATCAGAGAGATGTTTGATTGTGTGTCCCTTGATTTTCTACAACAGGGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATA</genome_strand>
        <mrna_strand>GTCTGATAAGAAG....................................................................................................GTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTT......................................................................................GGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333213" ref_strand="+" ref_description="SGN-U333213        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>atatcccatgtttacgattcaattttatacacccatttcccaaatcctctctttttaatgaaccctaacaagattaatcagtagaggaacatttttatttttgaaaatctttgattagtttcatggggttcttcaattactagtctttaatcgatttctgggatttttttgggttgtttcacctcaaagatcggatctttttcatctagtgtggatcaagttctcagtgaagatggctggatcagatgagaattacccaggagtgattaggccttcaaatcttcaagggggattgaggcctggtgttggaggaaaagtgaatggagggttggggcaaaataggagggcactaagcacaatcaataagaatgtgatgggagctcccccattacactgtgctgttgtccacaagagaaatgacattactgagtaaaaacttcttaaaccagagtactcgattccatttctagttttaatcttgatttctctacctgtttttcaactttttgttttaatttctttctagaaacaaagccagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="-" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="64608" stop="63227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64308" g_stop="64082" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64081" i_stop="63941" i_length="141">
            <donor d_prob="0.689" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63940" g_stop="63881" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="287" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63880" i_stop="63782" i_length="99">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="63781" g_stop="63527" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="542" r_length="255" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="-" ref_id="SGN-U333213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64308" e_stop="64082"/>
          <exon e_start="63940" e_stop="63881"/>
          <exon e_start="63781" e_stop="63527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATCCCATGTTTACGATTCAATTTTATACACCCATTTCCCAAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAGGTTGGTATTTGGGGTTTCATGAAATGAAGTTTTTGATATGTGTAGCTTAATTCTTTATGATTTTTCTTGGTTTAGATTGATGGGTCATTCAAATTTTCAATTGGGTTTTTGATTTTGTTTTTGGTTTGTGGGTTGGTGCAGTGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAGGTGAGCTTAGTCTTTTTTTTGTGTGTTCTTGAATTAGTGTTTGTTTTGATTCTTTTGTGTTTGTTGATTTGACTGTGATAAACCCTAATTGTTATATAGGGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGAGTAAAAACTTCTTAAACCAGAGTACTCGATTCCATTTCTAGTTTTAATCTTGATTTCTCTACCTGTTTTTCAACTTTTTGTTTTAATTTCTTTCTAGAAACAAAGCCAGTGCT</genome_strand>
        <mrna_strand>ATATCCCATGTTTACGATTCAATTTTATACACCCATTTCCCAAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAG.............................................................................................................................................TGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAG...................................................................................................GGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGAGTAAAAACTTCTTAAACCAGAGTACTCGATTCCATTTCTAGTTTTAATCTTGATTTCTCTACCTGTTTTTCAACTTTTTGTTTTAATTTCTTTCTAGAAACAAAGCCAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332955" ref_strand="+" ref_description="SGN-U332955        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G42340.1 | Symbol: None | similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:At3g46510.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD61809.1); contains InterPro domain Zn-finger, modified RING (InterPro:IPR003613); contains InterPro domain Armadillo repeat (InterPro:IPR000225) | chr5:16945138-16947700 REVERSE | Aliases: MDH9.3, MDH9_3 (evalue: 2e-48, score=188) genbank/nr: gi|50946935|ref|XP_482995.1| putative Avr9/Cf-9 rapidly elicited protein [Oryza sativa (japonica cultivar-group)] >gi|42409028|dbj|BAD10281.1| putative Avr9/Cf-9 rapidly elicited protein [Oryza sativa (japonica cultivar-group)] (evalue: 2e-54, score=214)">
      <seq>tttgaacaagggtttaaaatggatgaagaaaatgatcaatcaaatcgtattacaactcctattgataataaggatttggtatacgaacttatgggtataattcatattataagttcttacgcagaatttaggaggactcaaagaaaggaaagtcgtaatcttgtacgtaggatgaaacttttattaccccttttagaagaaattcgagatttccaaggaaaaatacctgaatcaggtgttcattgtttggtgaaaatgaagaaggcatttcattctgctaaaaagttgttaaaaacttgtcattgtggtagcaaactttatctggctttggaaagtgaggctgttataaggagatttcattctgtatatgaaaaattaagccaaactttggatggaatgccttatgaagaacttggtatttcagatgaagagaaagaacaggtggagttgatgatcattcaatttaaaaggtctaagaaacgaattgatactcaagatatggaactcgcgatggatttgatggtttcattgtccacggagaatgatcgaaatgcagatagtgctagtatagaaaggctagcgaaaaaactggaattgcatacagttgaggatttaaaagctgaaatgatatcagttaatgaagttataaaagaaagacgatcacataatgctgagaacacacaacgaatcgttgatcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="65916" stop="67512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66216" g_stop="66539" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66540" i_stop="66765" i_length="226">
            <donor d_prob="0.839" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66766" g_stop="66882" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="441" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66883" i_stop="66953" i_length="71">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66954" g_stop="67212" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="700" r_length="259" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U332955" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>700</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66216" e_stop="66539"/>
          <exon e_start="66766" e_stop="66882"/>
          <exon e_start="66954" e_stop="67212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAACAAGGGTTTAAAATGGATGAAGAAAATGATCAATCAAATCGTATTACAACTCCTATTGATAATAAGGATTTGGTATACGAACTTATGGGTATAATTCATATTATAAGTTCTTACGCAGAATTTAGGAGGACTCAAAGAAAGGAAAGTCGTAATCTTGTACGTAGGATGAAACTTTTATTACCCCTTTTAGAAGAAATTCGAGATTTCCAAGGAAAAATACCTGAATCAGGTGTTCATTGTTTGGTGAAAATGAAGAAGGCATTTCATTCTGCTAAAAAGTTGTTAAAAACTTGTCATTGTGGTAGCAAACTTTATCTGGTAACTAATTCTATCCTTAATTCTGTTAATATCATCAATTATATTAATAAGTGTGACCGTCCTATCTAAAATCATACTTTAGTCATTACTAATTTATATTATGTCACCTGATTCTGTTTCTCGAGGTTTTGGCATGTGTGTTCACCTCGTTTAGAAGCTTAAGCTAGTCTAGAAATGACGATATTATATGTTTCTGGGATTGATTTTCTTGGTTTTTCGTATGTAGGCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAGGTACGAAGAAAAATGTTTTCCTAGAAAATAAGTGGTTTTCTTACTTATATTGACGATATGATACTTTTCAGGTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCTCGGAGAATGATCGAAATGCAGATAGTGCTAGTATAGAAAGGCTAGCGAAAAAACTGGAATTGCATACAGTTGAGGATTTAAAAGCTGAAATGATATCAGTTAATGAAGTTATAAAAGAAAGACGATCACATAATGCTGAGAACACACAACGAATCGTTGATCTTC</genome_strand>
        <mrna_strand>TTTGAACAAGGGTTTAAAATGGATGAAGAAAATGATCAATCAAATCGTATTACAACTCCTATTGATAATAAGGATTTGGTATACGAACTTATGGGTATAATTCATATTATAAGTTCTTACGCAGAATTTAGGAGGACTCAAAGAAAGGAAAGTCGTAATCTTGTACGTAGGATGAAACTTTTATTACCCCTTTTAGAAGAAATTCGAGATTTCCAAGGAAAAATACCTGAATCAGGTGTTCATTGTTTGGTGAAAATGAAGAAGGCATTTCATTCTGCTAAAAAGTTGTTAAAAACTTGTCATTGTGGTAGCAAACTTTATCTG..................................................................................................................................................................................................................................GCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAG.......................................................................GTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCACGGAGAATGATCGAAATGCAGATAGTGCTAGTATAGAAAGGCTAGCGAAAAAACTGGAATTGCATACAGTTGAGGATTTAAAAGCTGAAATGATATCAGTTAATGAAGTTATAAAAGAAAGACGATCACATAATGCTGAGAACACACAACGAATCGTTGATCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322525" ref_strand="+" ref_description="SGN-U322525        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: AT5G42340.1 | Symbol: None | similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:At3g46510.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD61809.1); contains InterPro domain Zn-finger, modified RING (InterPro:IPR003613); contains InterPro domain Armadillo repeat (InterPro:IPR000225) | chr5:16945138-16947700 REVERSE | Aliases: MDH9.3, MDH9_3 (evalue: 4e-96, score=348) genbank/nr: gi|9759470|dbj|BAB10475.1| arm repeat containing protein [Arabidopsis thaliana] >gi|15238931|ref|NP_199049.1| armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (evalue: 3e-94, score=348)">
      <seq>gaaaatccagagaaacgaacattgatagctaattatggaggaattccaccactggtgttgctactttcctatccggattcaaaaatccaggaacatgctgtgacagctcttttaaacttgtcaatcgatgaatcaaacaagaaacttatatccagagaaaacgcgattcctgaaataatagagattttgcaaaatggaagtgttggagctaaagagaactctgcagcagcattatttagcttatcaatgcttgatgaaaacaaagtagctataggttcgttaaatggcatccctccgttgattgatctgttaaaaaacggaacgatcagagggaggaaggatgccattactgcacttttcaatctatgtttcaaccatgctaacaaaagtatcgcgatccaagctgggattgtagcaccattacttcaactactagaggaaaaacacttagacatggttgatgagacattgtcaatattgttgattctcgcgactcatccagaaggcagacaggtaattggaaagctttccttcatcgaaacacttgtaaatttgatgaaggatggcactcccaagaacaaggaatgttctgttgctgtgcttttcgagttgagtacctataattcaaatcttatgcttgctgctcttcaatacggcgtgtatgaatatctagtagagataagtaaggagggaactgatcgcggccaaaggaaagcaaaatcaatactacaacttatgaccaaaactgagcagatcccatattgacaatgcaaagtccaaatgtacatctgcttagcatttggctcgtcctgtcgtccatgtaggtcaacttggatctatgtccaaattaacgaatatatatttgttacatgttatataatgtaagaaaaagaaacaaaacacgagtgctaaatagaactcgttgaagggttgtctctttagaaaaggtaaaagaagtcctaacggaaactctgtgaagaactttctgcaatgattcaaggcaaagttagaagaatttttacaggaatatttctccttgtaatccaggtatgatcatagactatgttactcggacttttcaaaaatgttgacaagtgcatgtcagatactccaaaaaaatagtgcattttggagaatctaacacagatgcaacaataagtttgaagagtcaaatcatagattgtgaacttgcattacaatctagtgttgattagatggatgtgattgtttttatgtgactaatgaaaacaaatcaatggagaagaatcatggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="67448" stop="69326"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67748" g_stop="69025" g_length="1278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1276" r_length="1276" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1277" polyA_stop="1304"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U322525" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1278</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67748" e_stop="69025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACAATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTACAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGATAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGGTTGTGTCTCTTCAGAAAAGGTAAAAGAAGTCCTAACGGAAACTGTATGAAGAACTTTCTCCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCAGACTTTTCAAAATTGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACATAAATGCAACAATAAATTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATTAATGGAGAAGAATCATGGGAAA</genome_strand>
        <mrna_strand>GAAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACGATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTATAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGACAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGG-T-TGTCTCTTTAGAAAAGGTAAAAGAAGTCCTAACGGAAACTCTGTGAAGAACTTTCTGCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCGGACTTTTCAAAAATGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACACAGATGCAACAATAAGTTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATCAATGGAGAAGAATCATGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323494" ref_strand="+" ref_description="SGN-U323494        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, unknown protein F4L23.24 Arabidopsis thaliana chromosome II BAC F4L23, PID:g2583136 | chr4:17941797-17943356 FORWARD | Aliases: F22I13.50, F22I13_50(evalue: 2e-09, score=60.8) genbank/nr: hypothetical(evalue: 4e-22, score=108)">
      <seq>tcttttgaaacccctctcactggcgccgtctcttccatctttgctcacagtttttgatttacacctttttacagcttcattttgatagttttctgcctccgaagggtgttgagaataatctcaaaatggtcaactctgaaccccttcataatggtgtgaccactggtggaactggtatgccagcgtttgataagcaacttcctggtgtatcaagaaagacagctttgagagatgtgcagaatcaaaaaaccagcttgatgagtagccatcaagaaaattcacattttttaggcgtaagacctattgcagatccaactagggtatgtggaactaagaggcttacacctgagcgtccttcaaataccaattctagcaaatctttgagcagcaatgatacaaatgacaatatacttaatgctcgacgaagatttgatctagaactgggtaaaggaagacttcagagcaatgtggacaaatttgtggaggctactcactcaaagaacctgagtcagttgcagaggacaattcctcaaaagcaaaatctacagagggaaggtagtaatggtcatcctcctgtagcatcaccaaagcatttggcacctatgatgacattttctcatggtggaccatcaattcctaattctattggcaaggctgctaacaactctcgtgctcttccaattgattcttctaagctttctccccagccaatgcgtactttggatgtcaaggcggaagaagatcagaaattgacagaacatttcattcgtctgcagaagttcctgaaacagtgtgatgaagcaaaccaaacagaataccttcagctgcttctacgtttgtcaccacctgagcttagcagacatgccgttgacttggagaaaagggctatccagttgacaatagaagaaggaaaggagatgcaacgagtgaagaacctcaatgttttgggaaaatccaccctgttttccagcttaactcagacagttccattagtcccaatcaagaaatgatgaagctaatggcaataattcatgttgcactgatgcaatgcctgttttaaaacttgtactccactgggtacaagatcttgagaggaggctattaggcgttggcttctttagacatctatagtcttttttttctctttatagtaagttttttccttttgattagctagccctctagagatgaagaagttatcaaacactgtactttggtattcttttgggtataagcagttcatactanaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="72330" stop="77312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72630" g_stop="72702" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72703" i_stop="74438" i_length="1736">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74439" g_stop="75190" g_length="752"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="825" r_length="752" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75387" g_stop="75470" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="909" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="75471" i_stop="76674" i_length="1204">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.878" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76675" g_stop="77011" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="910" r_stop="1246" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1247" polyA_stop="1266"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U323494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1246</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72630" e_stop="72702"/>
          <exon e_start="74439" e_stop="75190"/>
          <exon e_start="75387" e_stop="75470"/>
          <exon e_start="76675" e_stop="77011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTGAAACCCCTCTCACTGGCGCCGTCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACAGTAAGTATTATTTCAGCAATTTCACTTTTTTCGAACGATATATCAACCAAAATGTTTCGATCTTTGTTGTCATAATTTTTTTTTTAAAATTTGATTATTTTTTAATGTAAATTGTATGAAGAATACTGAAAGAAGTGTTTTTTAATTTGTCATTCATGGTTATTGGTGAAAAATGAAGATTTTTTGAGGTGGGTATTGGTTCTAAACGAAGATTTAGTGGATTAGCTTTGTTGGGGTTGTTTATGAGTATTGGAAATTGAAGTAGATTCTTCTGGGGTAGCTAGGGGTACAAAGCATCCCGCGTTAGCAAGGTCGGGGAAGTAGATTCTGTATAGCAGAATTCATGGGTTTAATTTTGGTAGTGGGTATGTGCTTTGGGTTTTCCCCTTTTGGAGTATTAAGTAAAAAAGAATTGGTCTTAAGCTGCTTTTTAATTTTTGAAATTTTGTTATTCACCTTATCGAAATGGTTTGTGGGTATTTGGCATGTTCGTTTGTTGAGAAATGTTTTTTTATCTATTTGATGCTAATTTTTTGTAGATAGAAAATGTATGTTCATTTTTTACCTTAGATGTAAAAATTATGGTTTTGAATTTGTGTTAAAGGAGTATTTTTGATACAGATCTGTATTTGCTTAGCTATGCATTTATTGTATGAGTTAGCTCTAATGAATACTTTTTGGCTTTAGCTTTATAATAATTTTATGTACTTCTTTTACTCATGGAATGGTTTTCAATCATTGTTCTTGTAATAGTATGATGCTAAGGGTGTGTTTGGGATGAAGAAAAATGTTGTGTTTTTTTTTGGAAAAGAAAGTGGCTTTTTAATCTTATTTTCTAGTAAGTAAGCAAAAAATATTATCCCAAGAGCATTTATATGTAATGTAGCTAAACATCTGGAGTAGGATAGGGTGTTGGAGGTGGGATGATCAAGGGATGAGGCTGGGACCGTTGGTGAGTGGAAATGAACTTAGAATGTCACTTATGTAACTTGTTTACTACTAATAGGGAAGTCATTTTCCTCATTCTTTAAGGAACTTGTTTTCCTAGAGAAAATGTTACCAATCATGGGAAAATTGAAAACATTTGATAACTGTTTTTCTTTTAATATAAAGTACTAGATGATAACTTCTTACAAATAAAAGGTGGGGTATATTGGCTTCTTTATCTTCTTACCAAGACATTCATCAGTGGGTCTTTCTCCTTGGTACTGGTTCTGTCTCTTTTGTCCTCTTACACAGCGAGCTGATGAAATCTACTATGGAGTGACTGATTTATATCTTGTACTACTTCACTTTTGGACCATACACACAAAAAAGTATAAGCAATTATATTTCAGCTGATGCACTGATTTTTTCTCTTTCAGAACATTTCTTGTTATCTCATTCGGTAGCTCCCAAAATATAGTTAAAGGAATTGAGTTCTGTATCTTTCTGGTAGTTTTTGGTGTCTTCTTGTCCCTCCATTTGTAAAACATTTGTATAATATCTCCTGGAGATACCATTTAATGTAGGCTTGTTTTTCTTAAGAATAAAGTCCACTTCCCAGGTTGCCTTGCAGTGTATAAATTATGATTTACTTACTCTTAAATCTTTCTCACATAGGTTAAATCTGCTAGCGACACCTCTTTCCCAAATCTGTTTTTTTTGTTCTGTCTTTCCACCATCTTCTTCTTCAAGTCTTTTTAACACTAAGGTAGTGGAGTATGATATATTTTTCATCTTTGTTTTCTGATCAGGCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGCGTGAGTCTTAGAGTCTTTCTACATAACTTATAAGCAGTTGACTAATTTCATTTTGACTCCTCGTTTATGTTGTTTGTATGATTTGTTTCTCTCAGTGCTTCTGCATTAGTCACCTCCTGAGCTTAGCAGACATGTTTTGTCTAGTTTCATTTTGACTCCTTGTTTATGCTGTTTGTATGATTTGTCTTTCTGTCAGTGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAGGTAAGCTGACAATAAACTGTTCGTTTTTTTCCCTACCCTTCATAGATGGGAGTTCCTGAATGGTTCATATGTTTAGATGTATGCATGTATAATGGAACTTTACTTACCCTTGCCTGATTTGGTGAAAGGCTGCCTTGTATTGATTTGTGTATCTATATGCTACCTCCATTTCAATTTGTTGTCTTACTTTTCTTTTTAGTCCGTTTCAAATAGGATGTCTCTTTCCCATTTTGAAAACTCTTTCATTTCAATTTTCCATGTAACATGTTTAAGACCACAAGTTAAAAAGATATTTTGGTACATTCAACATGTTTTTTAGTTTAAGACCACAAGATTAAAAAATATTCTTTATTTTTTAAATTCCGTGTCTAGTCAAAACCATACAAACAAATTGAAATTGAGAGAGTACGTATTTATGACTATCTGTAAAAAAGTGTGGCTAAGTCTAAGTGGACTTTATCCAAGGTTACTGAAGTCGTTGAATCTCCTCTTGCATTTTGGTAGATGTTGTTACATTGGCTAGTTGAATCAAGCACCCAACACTCTCCAGTGCATGACATGTTACTATATATTCTAATTATATTAGGAAGAGTATTTGCTCAACTTCTCATGCTTATATTAGAGGTTGACATCCCCTTCCACACCCTTCAGTGGGAATATGATCTGCTCATGTGGGGAAGCTGTATGTATGCAAGATGTACCTCCCCTGCCTTAGGACCAGGGACGGAGTCGGGTAGGGTCGAGGGGGTTTGGATGGACCTGTTTATACTTGATCAAAATTATTTTTTACTGTATACATAGTAGATATTGCACCCCATTTGGCTTCTTCTTGTGTTTACTTCTTTATATTTTGAACCACCCTTAGTGAAAATCTTGGCTCCGCCACTACTTAGGAGGTGATATAATTGGAACACACAGAATGAGAGTCTAGATGTAGGTACTCAGCCGTCTTATGTGCACACAATGTGGAAGTCCGACTACAATAAGGTTTCAAAGCTTATATAATCACCACTTGCTTCAAATGAGTCAAGAATGAGGCTTTAAGCCTTGAACCTCACAACCTTGCGAGTTGTTTATTCACACTAATGGTATCCCTTTGTTCTTGGTGGTTGTAAACATTTTCCAGATCTGTTGAGAAAGTATGGTAAAAGTGATCAACGCAAGAACATTTCAGTAAAACTTCCGTTTTCTATGTTCAATGCAGGAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCAATGCCTGTTTTAAAACTTGTACTCCACTGGGTACAAGATCTTGAGAGGAGGCTATTAGGCGTTGGCTTCTTTAGACATCTATAGTCTTTTTTTTCTCTTTATAGTAAGTTTTTTCCTTTTGATTAGCTAGCCCTCTAGAGATGAAGAAGTTATCAAACACTGTACTTTGGTATTCTTTTGGGTATAAGCAGTTCATACT</genome_strand>
        <mrna_strand>TCTTTTGAAACCCCTCTCACTGGCGCCGTCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGC....................................................................................................................................................................................................TGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCAATGCCTGTTTTAAAACTTGTACTCCACTGGGTACAAGATCTTGAGAGGAGGCTATTAGGCGTTGGCTTCTTTAGACATCTATAGTCTTTTTTTTCTCTTTATAGTAAGTTTTTTCCTTTTGATTAGCTAGCCCTCTAGAGATGAAGAAGTTATCAAACACTGTACTTTGGTATTCTTTTGGGTATAAGCAGTTCATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323759" ref_strand="+" ref_description="SGN-U323759        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | catalase 1, identical to catalase 1 GI:2511725 from (Arabidopsis thaliana) | chr1:7146720-7149967 FORWARD | Aliases: F5M15.31, F5M15_31(evalue: 1e-159, score=558) genbank/nr: gi|536787|emb|CAA85426.1| catalase [Nicotiana plumbaginifolia] >gi|1345684|sp|P49317|CATA3_NICPL Catalase isozyme 3 (evalue: 1e-164, score=581)">
      <seq>cggccgaattgacctccaaaaaacccattaaaaatttcttcttccgttttctctctttcagtctaaatatttttctctttcttttgccatggatccttacaagtatcgtccttcaagtgctgccaattcccccttcatgacaactaactctggtgctcctgtgtataacaacaattcttccttgactgttggaactagagggccaattcttctcgaggattatcatctgctggagaagattgccaattttgatcgtgagagaatcccagagcgtgttgttcatgccagaggtgccagtgccaagggtttctttgaggtcacacatgatatatcccatcttacatgtgctgattttcttcgagctcctggtgtccagacacctgttattgtgaggttctctactgttatccacgagcgtggaagccctgaaaccctcagggaccccagaggatttgctgtaaaattttacaccagagagggtaactttgatttagttggaaacaacttccctgtcttcttcgtccgtgatggaatgaagttccctgacatggttcatgccctgaaaccaaatccaaagtcccacattcaggagaactggaggatccttgatttcttctctcaccatccagaaagtcttcatatgttcagtttcctgtttgatgatctgggaattccacaagattacaggcacatggatggtttcggtgttaatacctacatgctgatcaacaaagctgggaaagcacagtatgtgaaattccattggaagccaacttgtggagtcaaatgcttgttggatgaagaagctattaaggtcggtggatcaaatcatagtcatgccaccaaggatctctatgattcaattgctgctgggaactatccagagtggaaactgttcatccaaactattgatcctgatcatgaagacagatttgactatgacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="78546" stop="82299"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78846" g_stop="78917" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="103" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78918" i_stop="79588" i_length="671">
            <donor d_prob="0.954" d_score="1.00"/>
            <acceptor a_prob="0.925" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79589" g_stop="79685" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="200" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="79686" i_stop="80629" i_length="944">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80630" g_stop="80907" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="478" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80908" i_stop="81531" i_length="624">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81532" g_stop="81999" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="479" r_stop="946" r_length="468" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U323759" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>915</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78846" e_stop="78917"/>
          <exon e_start="79589" e_stop="79685"/>
          <exon e_start="80630" e_stop="80907"/>
          <exon e_start="81532" e_stop="81999"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAGGTATTTTTTTTTTCAATTTTTATTGAAGAATTTTATTGATTTTATAGGATTTTTTTTGTGTGTTTTTTTTTAAAAAATTTGATCTGTGTAGTTGCAGTAGATTCCTTTTGATTTTCCAAAAAAAGGAATTTTTTTTGTTTGTTGTTTAATTTGATTTTGTGGATTGTTATATTTTGTGAAACTTCTTTTTTTTTTTATCGTTTTGATTGTGGTTTGTGAAGGATATATGCGGGGAAATTGAGATTCCGTTTTTTTTTTTTTTTTTTGATGTTTTTTTTTGTTTAATTTGGTGGTTGAAGCTCATTTTGCCCTAGTTTTGTGGGTTGATTTATAAGAGACTGCGGGTTTATGTCTAGTTAACCTCAGTTTTTTTAAGAGAAGGGTAACTAGAAAACCTCAGTTTTATCTGTTATCGAATGATATTTTTTTATGTCAACTTTTTTTAATGGGACTTTATGATATAATAACTGTTTGAGAAATCAAGTTGTGCTTCCATATCTATTATATGGTTTGGTAAGGGTATACGTGAATGTTGGTTTATATTTTTGTTGGTGCAACTTTTTGGAAATTGATGAGCTAGAATTATTAGGATGTCCAGAGGATTTTTGGTTGGTTTATATCATATTTGAACATACGAGGTTTATGATTAATGATTGTGAGGTTTGATGCAGTATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAGGTACTCTTTAGCTTCTCTTATCTTTATTCTGATGTGTAAAGTTCACGTTTTTATTCAATTTTTTGGGTATAAGAACATAGTCCTGACCTTGAAAAGGGAGAGTGTTGATAAATAGACAGCCAACAGTAGCGAGTTTGGGTATTTCAAGGTGTAGTTGATTGATAAGAGCAATTATTCCTTCTATCTTGTGATTTTTTGTGCGTGTGGGAAACAAGATGCCAGTATGATATATCTTGTCGTTTTGGGGACATGCATTTGGTTAGCTACTTAAATGAGTAAGATGATATAAGTTTAGACACTATAGTGTCTGTTATCTCTGGGTGTGCATATGTTCCCATTTGTATTTCTGGGTGTGCATATCTTTTGTTTGTGTAGATCATTATGAATACATATATATGGAAACCAACAGGAACTACTGTTCTCCTGCATTGTTAGCTTGTTATTGGTCCTCCTTGATGCTCAATTAGAAAAAAGTGTGTGATCTAGATGGTCAATTTGGTATAAGGTGACTTACTGTTTTTATTCTTGGATATATTCCTTGATGTTCCACTCTTTTGAAGAATTATTCAACATGGTATGAGTAACGTTGGTCATAACGGTTTCCAGAATATACTGTAATAAAATAGGAAAATGTAGATGGTTGAAAGGTGGAAACAATTCGTGATGGGAACTTCAAGATTATCACTTCTCACTTTTTCTATGTCATTTGAATAATTTCACCGGCAAGGATTGATAGAATTTGCTTAAAAGGCTAAATAGCTCTTTGCATATTACAAATAATGCAATTTGTCCTGTGTAATAGAGGTGCTTTTCATGATCAGTACAAATAAAATTCTGTAGTTTTTTGTTTTAGAGATTATCATAATAACATTTATAGAATTTTCCAGTTTTAGTGGATTTCTCACCATGGATAAGAATATTGAAACTTGTTATTCTTTTTTCAGGGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAGGTAATTTCTTATGCTAGTTTTTTCTTGCAATGTCTTCATTGTCAGACTTCCATTTATCAGTACCCCAAAATTGTATGCCTGTCAAGCTGGTAAGAGACCATTGCTGAAACACAGACTTGTATTTCATCTCTCCCTAGCTTTGAAGTCAGCAATTGATTTTGTAGAACAGGTTGAAGAAAGGTATATGTTATGTGAGAAGTGTTTGGTTTAAGCCTCTAGTGATATGCCTAATTTGCAAAATTTTCTATTTGTTTGGTCCTTCTTAGTAATTTTAGACAGCGACACAATTGCTCATATGAATTTGTTCAGATTTATAATCTCAATCTCGTCGAAATCCAACGAACTGTTTATAAGCCTAAACACCACGCGGTGCTGTTTTTTGATGGTTTTGATCACTCATGGATTCTGAAAAATACGATGTTGAAGGGAGTATTCATTTGTAAAAGGGAGTGTTCAAAATCAATGAAGTGTATCAAGTGTCCTTCATTCCCTGGTTTTTGTTCTTATGAATTTCATCTGATGGAAATAACCATTTACTTGATAGCCATTTTCTGTTTCCTGATCAATGAATGCACTGCACTTCTTTTGTGTTTGCTGTTCGTGGCTGAAGCTTTTGTATTTCAGGGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAGGTCGGTGGATCAAATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTATCCAGAGTGGAAACTGTTCATCCAAACTATTGATCCTGATCATGAAGACAGATTTGACTTTGACCCC</genome_strand>
        <mrna_strand>AAATTTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAGGTCGGTGGATCAAATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTATCCAGAGTGGAAACTGTTCATCCAAACTATTGATCCTGATCATGAAGACAGATTTGACTATGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323590" ref_strand="-" ref_description="SGN-U323590        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | catalase 2, identical to catalase 2 SP:P25819, GI:17865693 from (Arabidopsis thaliana) | chr4:16700637-16703292 REVERSE | Aliases: T12J5.2(evalue: 7e-88, score=320) genbank/nr: gi|22656384|gb|AAM97542.1| catalase 3 [Capsicum annuum](evalue: 6e-93, score=343)">
      <seq>agaatgagcagcttgctttttgccctgccattattgtccgtggtgtttactattcggatgataagcttctccaaactagggtattctcatatgctgatacccagagacaccgccttggtccaaactatctgcagctcccagttaatgctcccaagtgtgctcatcacaataatcaccatgaaggtctcatgaatttcatgcaccgtgatgaagaggtcaactatttgccctcaaggcttgatccttgtcgtcatgcggagcagtaccctattcctcctcgtgtcttgacaggaaaacgcgaaaaggtcatcattgagaaagagaacaactttaagcagccaggagaacattacagatcttgggcaccggacaggcaagaaagatttttgtgcagatgggttgatgctctatctgatcctcgagccactcatgaaattcgcagtatctggatctcatactggtcacaggctgacaagtctcttggtcagaagctcgcgtctcgtctcaatataaggcctacaatgtgaagatgaaaatgtgttggtgtagtgaagaagtaatccaagaaaaaaatgtttgttttgggtggtagtttggttgtgtaccaacaaactttcttgtgttagttctgatcactttctgaataaattgaacgttttagtctcataaagtgggtgtttctatgaggttatatcatacataataacgaatatacagttggatcctaaaaaaaaaaaaaaaaaaaactcggactag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="81794" stop="83680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82094" g_stop="82308" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82309" i_stop="82571" i_length="263">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82572" g_stop="82661" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="305" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82662" i_stop="82774" i_length="113">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82775" g_stop="82842" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="373" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="82843" i_stop="82926" i_length="84">
            <donor d_prob="0.766" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="82927" g_stop="83020" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="467" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="83119" g_stop="83380" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="468" r_stop="729" r_length="262" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="747"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U323590" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323590" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82094" e_stop="82308"/>
          <exon e_start="82572" e_stop="82661"/>
          <exon e_start="82775" e_stop="82842"/>
          <exon e_start="82927" e_stop="83020"/>
          <exon e_start="83119" e_stop="83380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATGAGCAGCTTGCTTTTTGCCCTGCCATTATTGTCCCTGGTGTTTACTATTCGGATGATAAGCTTCTCCAAACTAGGGTATTCTCATATGCTGATACCCAGAGACACCGCCTTGGTCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTGTGCTCATCACAATAATCACCATGAAGGTCTCATGAATTTCATGCACCGTGATGAAGAGGTATAGTACATCCTTGAGGTTGCTATTTTTAGTGGATTGTTTAGAGTAGAAATATTTATCCACTTCACAAGGAAAGACAAGGGGTTGTTAATCATATTAGCCTAGTTGTTCCCTTGTCTATGTGAACTTAGCAAGGCAAGAAAGGTACTTTGGTCTGATGATGAAGCCTAGTTGCGAATTTTGCTTCTCACACTATTTTGGAAGTGCATGTATTGACAGTTTACTGTTTTGATGTGTTAACCTGATGTTGTATGCTGTTTCAGGTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGGAAAACGCGAAAAGGTGACACTATCTTATTTTTGGTGCAAAGTTAACCTTTCATAAATATAAATATTCTCCTTTTTCCCTAGTCTTGTTTCCTCCATATGTCTAAACCATGATGAGTTATATTGCAGGTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAGGTAGTCTAGTTCCTCTGTTATTTTCAGTCACCAAGTTTCCACCCCTATCAGTTATGTACTTATCTGCCGGCCTTGTGATTGCAGGCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAGGTCAAGAGTTCTTTCCTTTACATGCTACTACTTTAATCCCACATTTATCCTGAGGGACACAACGATAAGAATGTTTGTTTTGCATGTATATGGTGCAGGCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</genome_strand>
        <mrna_strand>AGAATGAGCAGCTTGCTTTTTGCCCTGCCATTATTGTCCGTGGTGTTTACTATTCGGATGATAAGCTTCTCCAAACTAGGGTATTCTCATATGCTGATACCCAGAGACACCGCCTTGGTCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTGTGCTCATCACAATAATCACCATGAAGGTCTCATGAATTTCATGCACCGTGATGAAGAG.......................................................................................................................................................................................................................................................................GTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGGAAAACGCGAAAAG.................................................................................................................GTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAG....................................................................................GCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAG..................................................................................................GCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTTTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337855" ref_strand="-" ref_description="SGN-U337855        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | catalase 2, identical to catalase 2 SP:P25819, GI:17865693 from (Arabidopsis thaliana) | chr4:16700637-16703292 REVERSE | Aliases: T12J5.2(evalue: 3e-67, score=251) genbank/nr: gi|536787|emb|CAA85426.1| catalase [Nicotiana plumbaginifolia] >gi|1345684|sp|P49317|CATA3_NICPL Catalase isozyme 3 (evalue: 1e-72, score=275)">
      <seq>aggaaaacgcgaaaaggtcctcattgagaaagagaacaactttaagcagcccggagaacatttcagattttgggccccggaccggcaagaaaaatttttgtgcagaagggttgaagctttatttgatcctcgagcccctcatgaaattcgcagtatttggatttcatactggtcacagggtgacaagttttttggtcagaagctcgcgtttcgtttcaatataaggcctccaatgtgaagatgaaaatgtgttggtgttgtgaagaagtaatcccagaaaaaaatgtttgttttggggggtagtttggttgtgtacccacaaacttttttgtgttagttttgatccctttttgaataaattgaacgttttagtttcataaagggggggtttttttggggttttttcatacataataccgaatattcagttgggtccttaaaaaaaaaaaaaaaaaaactcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="82473" stop="83680"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="82646" g_stop="82661" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="82662" i_stop="82774" i_length="113">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="82775" g_stop="82842" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="84" r_length="68" r_score="0.912"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="82843" i_stop="82926" i_length="84">
            <donor d_prob="0.766" d_score="0.90"/>
            <acceptor a_prob="0.930" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="82927" g_stop="83020" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="178" r_length="94" r_score="0.915"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="83119" g_stop="83380" g_length="262"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="440" r_length="262" r_score="0.897"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="441" polyA_stop="458"/>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U337855" ref_strand="-">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337855" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="82646" e_stop="82661"/>
          <exon e_start="82775" e_stop="82842"/>
          <exon e_start="82927" e_stop="83020"/>
          <exon e_start="83119" e_stop="83380"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGAAAACGCGAAAAGGTGACACTATCTTATTTTTGGTGCAAAGTTAACCTTTCATAAATATAAATATTCTCCTTTTTCCCTAGTCTTGTTTCCTCCATATGTCTAAACCATGATGAGTTATATTGCAGGTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAGGTAGTCTAGTTCCTCTGTTATTTTCAGTCACCAAGTTTCCACCCCTATCAGTTATGTACTTATCTGCCGGCCTTGTGATTGCAGGCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAGGTCAAGAGTTCTTTCCTTTACATGCTACTACTTTAATCCCACATTTATCCTGAGGGACACAACGATAAGAATGTTTGTTTTGCATGTATATGGTGCAGGCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</genome_strand>
        <mrna_strand>AGGAAAACGCGAAAAG.................................................................................................................GTCCTCATTGAGAAAGAGAACAACTTTAAGCAGCCCGGAGAACATTTCAGATTTTGGGCCCCGGACCG....................................................................................GCAAGAAAAATTTTTGTGCAGAAGGGTTGAAGCTTTATTTGATCCTCGAGCCCCTCATGAAATTCGCAGTATTTGGATTTCATACTGGTCACAG..................................................................................................GGTGACAAGTTTTTTGGTCAGAAGCTCGCGTTTCGTTTCAATATAAGGCCTCCAATGTGAAGATGAAAATGTGTTGGTGTTGTGAAGAAGTAATCCCAGAAAAAAATGTTTGTTTTGGGGGGTAGTTTGGTTGTGTACCCACAAACTTTTTTGTGTTAGTTTTGATCCCTTTTTGAATAAATTGAACGTTTTAGTTTCATAAAGGGGGGGTTTTTTTGGGGTTTTTTCATACATAATACCGAATATTCAGTTGGGTCCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323930" ref_strand="+" ref_description="SGN-U323930        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | flower pigmentation protein (AN11), contains 3 WD-40 repeats (PF00400); identical to GB:AAC18912 from (Arabidopsis thaliana) (Genes Dev. 11 (11), 1422-1434 (1997)) | chr1:4394899-4396289 REVERSE | Aliases: F13K23.16, F13K23_16(evalue: 0, score=653) genbank/nr: WD40(evalue: 0, score=687)">
      <seq>ggcggcggaagaagaagaaatcagaaatgggagcaagcagtgatccgaaccagcaagatggttccgacgaacagcagagacgctccgagatctacacctacgaggctccatggcacatatacgctatgaattggagtgttcgcaaggataagaagtatcgtctcgccattgctagcttgctcgagcagtaccaaaaccgagttgagattgtgcagcttgatgactctaatggtgagattcggtccgacccgaaactctcatttgagcacccgtatccgcctacgaaagttatcttcatacccgataaggagtgccagaagccggaccttatcgctacctctagtgattatctcaggatttggcgagtctccaatgataatagtcgggttgacatgaagagtcttcttaataacaaccggaacagtgagttttccggtccgttaacctcatttgactggaatgaagctgagccgaggcggattggtacgtcgagtattgatactacctgtactatatgggatattgagagggagactgtcgatacccagttaattgctcatgataaggaggtttatgatattgcttggggtggggttggagtttttgcttctgtttcagctgatgggtctgttagggtttttgatcttcgtgataaggagcactctacgataatctatgagagttctgagcctgatactcctcttgtacgccttggatggaacaagcaggatcctaggtatatggccaccataataatggacagtgcaaaggttgtagttttggacatccgtttcccgacactgccggtggtggaactacagaggcaccaggctagtgtgaatgccattgcctgggctcctcacagctcttgccatatttgtactgctggtgacgactcacaggcgcttatctgggatctctcttcaatgggtcagccaatagaaggtggattggatccaattctggcttatactgcaggtgcagaaatcgagcagcttcagtggtcctcatcccagcctgattgggttgccattgcattctccaacaagcttcagattctaagggtgtgaattagctattctcgctcgcacttcaagcagctgctcaagtatcatcttattcagtcttcctgctagcgacatttctccaagtaaaaattttcctttttttggcattttattcccaaaatgaaaaacgaggcttattactgacaatagttaaacctgaatagcttttgctatctttgcacctagggctctattatcatagaagtaactggaatccacattgtctgtgggattcagttagtcagcattattgtggttggtctgcaacatctgtagcttgtattatgtttattgaaaaccgcaattggagtaatcaaatcatatgtgttttgatgttcctgagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="84339" stop="86351"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84639" g_stop="86050" g_length="1412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1412" r_length="1412" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U323930" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1412</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84639" e_stop="86050"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCAATTGGAGTAATCAAATCATATGTGTTTTGATGTTCCTGAGAG</genome_strand>
        <mrna_strand>GGCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCAATTGGAGTAATCAAATCATATGTGTTTTGATGTTCCTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339909" ref_strand="+" ref_description="SGN-U339909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-05, score=53.1)">
      <seq>tggatccttcatgatctaatttttaagattcgggttatggatttatgtatggatacgattgcgggggttcacctaaaaatgattagaatgtctaaaataagttataaaacctaaattatgagatattatgaagagaatctcatattgagattaaaggaaaaggagtgacaaagaaatttatatataaaaggtattctattttcttcaatttcaacttagattttgcattgattattgaaattattaaaactatcctgactttccccgtcgattttgctcaaagcaccctaaatcggttgaccaaattggacacagatcccacacccacactcatgtcgtgttgacatgggtgcggcaccataagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0106F07-eYsRK/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0106F07.1" temp_strand="+" temp_description="C04HBa0106F07.1  CU062498.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0106F07 sequenced_by:sanger upload_account_name:uk">
        <position start="86921" stop="87885"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87221" g_stop="87585" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0106F07.1" gen_strand="+" ref_id="SGN-U339909" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0106F07.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87221" e_stop="87585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGATCCTTCATGATCTAATTTTTAAGATTCGGGTTATGGATTTATGTATGGATACGATTGCGGGGGTTCACCTAAAAATGATTAGAATGTCTAAAATAAGTTATAAAACCTAAATTATGAGATATTATGAAGAGAATCTCATATTGAGATTAAAGGAAAAGGAGTGACAAAGAAATTTATATATAAAAGGTATTCTATTTTCTTCAATTTCAACTTAGATTTTGCATTGATTATTGAAATTATTAAAACTATCCTGACTTTCCCCGTCGATTTTGCTCAAAGCACCCTAAATCGGTTGACCAAATTGGACACAGATCCCACACCCACACTCATGTCGTGTTGACATGGGTGCGGCACCATAAGT</genome_strand>
        <mrna_strand>TGGATCCTTCATGATCTAATTTTTAAGATTCGGGTTATGGATTTATGTATGGATACGATTGCGGGGGTTCACCTAAAAATGATTAGAATGTCTAAAATAAGTTATAAAACCTAAATTATGAGATATTATGAAGAGAATCTCATATTGAGATTAAAGGAAAAGGAGTGACAAAGAAATTTATATATAAAAGGTATTCTATTTTCTTCAATTTCAACTTAGATTTTGCATTGATTATTGAAATTATTAAAACTATCCTGACTTTCCCCGTCGATTTTGCTCAAAGCACCCTAAATCGGTTGACCAAATTGGACACAGATCCCACACCCACACTCATGTCGTGTTGACATGGGTGCGGCACCATAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>30</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="2236" PGL_stop="1539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2236" e_stop="2169"/>
            <exon e_start="2060" e_stop="1539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2236" e_stop="2169" e_length="68"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="2168" i_stop="2061" i_length="108"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="2060" e_stop="1539" e_length="522"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2236" stop="2169"/>
              <exon start="2060" stop="1539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343399" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATATTAGAAGGGATCCAGCTTGATGTACTTCTATATAACACCATTTTTCAAGTGGCAGCTGAGAAG : GGAAGAATAGATGTCATCGAACTCATTGTTGAGCACATGCACCTCCAAGGGGTTCTCCCAGATCCATCAACATGCAGTCATGTTTTCGCTGCATATGTAGACCATGGATTCTATAACACTGCCATGGAAGCTTTGCAAGTTTTGAGTGTGCGAATGATTGTTGAGGTTGAGAAAGATACAGATGAAAAACGAACTGAACTTGAAAATCTAATTCTTGGTGAAGACTCGGAAGATGAGCCCCAGATTCTTAAGACTTTTAAAGACTCGAAAGAATATCTTACTGTTGCCTTACTGCAATTAAGATGGTGCGCCATACTTGGATATCCAGTATCTTGGTCACCTTCAGACAGTCAATGGGCCAGGAGACTTTCAAGTAATTTTGCTTCAACAAACGGTCTTCTGTGAAGGTTTCATGTTTCCACAGGTGTGTGGACTCTTTTGATCTTGCATATCACCTGGTATGTCAATTCTCAGTTCTGATACGCTAACTCGTGATATATTAATGATCGGAATGGGTTAATG</gDNA_template>
            <first_frame> E  Y  *  K  G  S  S  L  M  Y  F  Y  I  T  P  F  F  K  W  Q  L  R  R :   E  E  *  M  S  S  N  S  L  L  S  T  C  T  S  K  G  F  S  Q  I  H  Q  H  A  V  M  F  S  L  H  M  *  T  M  D  S  I  T  L  P  W  K  L  C  K  F  *  V  C  E  *  L  L  R  L  R  K  I  Q  M  K  N  E  L  N  L  K  I  *  F  L  V  K  T  R  K  M  S  P  R  F  L  R  L  L  K  T  R  K  N  I  L  L  L  P  Y  C  N  *  D  G  A  P  Y  L  D  I  Q  Y  L  G  H  L  Q  T  V  N  G  P  G  D  F  Q  V  I  L  L  Q  Q  T  V  F  C  E  G  F  M  F  P  Q  V  C  G  L  F  *  S  C  I  S  P  G  M  S  I  L  S  S  D  T  L  T  R  D  I  L  M  I  G  M  G  *   </first_frame>
            <second_frame>  N  I  R  R  D  P  A  *  C  T  S  I  *  H  H  F  S  S  G  S  *  E   : G  K  N  R  C  H  R  T  H  C  *  A  H  A  P  P  R  G  S  P  R  S  I  N  M  Q  S  C  F  R  C  I  C  R  P  W  I  L  *  H  C  H  G  S  F  A  S  F  E  C  A  N  D  C  *  G  *  E  R  Y  R  *  K  T  N  *  T  *  K  S  N  S  W  *  R  L  G  R  *  A  P  D  S  *  D  F  *  R  L  E  R  I  S  Y  C  C  L  T  A  I  K  M  V  R  H  T  W  I  S  S  I  L  V  T  F  R  Q  S  M  G  Q  E  T  F  K  *  F  C  F  N  K  R  S  S  V  K  V  S  C  F  H  R  C  V  D  S  F  D  L  A  Y  H  L  V  C  Q  F  S  V  L  I  R  *  L  V  I  Y  *  *  S  E  W  V  N  </second_frame>
            <third_frame>   I  L  E  G  I  Q  L  D  V  L  L  Y  N  T  I  F  Q  V  A  A  E  K  :  G  R  I  D  V  I  E  L  I  V  E  H  M  H  L  Q  G  V  L  P  D  P  S  T  C  S  H  V  F  A  A  Y  V  D  H  G  F  Y  N  T  A  M  E  A  L  Q  V  L  S  V  R  M  I  V  E  V  E  K  D  T  D  E  K  R  T  E  L  E  N  L  I  L  G  E  D  S  E  D  E  P  Q  I  L  K  T  F  K  D  S  K  E  Y  L  T  V  A  L  L  Q  L  R  W  C  A  I  L  G  Y  P  V  S  W  S  P  S  D  S  Q  W  A  R  R  L  S  S  N  F  A  S  T  N  G  L  L  *  R  F  H  V  S  T  G  V  W  T  L  L  I  L  H  I  T  W  Y  V  N  S  Q  F  *  Y  A  N  S  *  Y  I  N  D  R  N  G  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2234" stop="2169"/>
                    <exon start="2060" stop="1656"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILEGIQLDVLLYNTIFQVAAEKGRIDVIELIVEHMHLQGVLPDPSTCSHVFAAYVDHGFYNTAMEALQVLSVRMIVEVEKDTDEKRTELENLILGEDSEDEPQILKTFKDSKEYLTVALLQLRWCAILGYPVSWSPSDSQWARRLSSNFASTNGLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="6740" PGL_stop="2256"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6740" e_stop="6625"/>
            <exon e_start="6394" e_stop="6299"/>
            <exon e_start="6193" e_stop="6020"/>
            <exon e_start="5478" e_stop="5251"/>
            <exon e_start="3315" e_stop="3172"/>
            <exon e_start="3078" e_stop="2890"/>
            <exon e_start="2288" e_stop="2256"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.910" acc_prob="0.564" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.979"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="0.994"/>
          <exon-intron don_prob="0.864" acc_prob="0.995" e_score="0.991"/>
          <exon-intron don_prob="0.990" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6740" e_stop="6625" e_length="116"/>
          </exon>
          <intron i_serial="1" don_prob="0.910" acc_prob="0.564">
            <gDNA_intron_boundary i_start="6624" i_stop="6395" i_length="230"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="6394" e_stop="6299" e_length="96"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6298" i_stop="6194" i_length="105"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="6193" e_stop="6020" e_length="174"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="6019" i_stop="5479" i_length="541"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="5478" e_stop="5251" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.864" acc_prob="0.995">
            <gDNA_intron_boundary i_start="5250" i_stop="3316" i_length="1935"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3315" e_stop="3172" e_length="144"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.989">
            <gDNA_intron_boundary i_start="3171" i_stop="3079" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3078" e_stop="2890" e_length="189"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.962">
            <gDNA_intron_boundary i_start="2889" i_stop="2289" i_length="601"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2288" e_stop="2256" e_length="33"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6740" stop="6625"/>
              <exon start="6394" stop="6299"/>
              <exon start="6193" stop="6020"/>
              <exon start="5478" stop="5251"/>
              <exon start="3315" stop="3172"/>
              <exon start="3078" stop="2890"/>
              <exon start="2288" stop="2256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAAAAACATTAAGTGCATCTGTTGTGAAGCTTTTGAGGTGGTCCTTCAATGATGTTATGCATGCTTGTGCACAAGTTCAAAATTGTGATTTGGCTGAACAGTTGATGTTACAG : ATGCAAACTCTTGGTTTGCAACCATCAGGGAGTACATATGATGGCTTCATTAGGGCAATTGCTACCACAAGAGGCTTTAGTGACGGGGTGGAAGTG : CTAAAGGTTATGAAAGAGAAAAATATTAAGCCTCATGATTCAACTCTTGCTGTTTTAGCAGTCATGTGCAGCAGAGAGTTGGAACTCAATCTAGCAGAGGCTTTCTTGGATGAGATGTCCAAAATCCATAATCCTCGTCCTTATAATGCTTTTCTTGAAGCATGTGATGTTCTG : GATCGGCCCGAACGAGCAGTTCAAATATTGGCTAAGATGAAAAGGTTGAATCTTCAGCCAAATATCAGGACATATGAGTTGCTATTCTCACTGTTTGGTAATGTAAATGCACCTTATGAAGAGGGCAACATGCTGTCACAAGTGGATGTTGCTAAAAGGATAAATGCTATAGAAATGGACATGATGAGGAATGGCATTCCGCACAGTCATCTGTCGTTGAGGAATGTG : TTGAAAGCGCTTGGAACAGAAGGGATGGTAAAGGAGCTGATTCAATATTTACGTGCTGCAGAGAATCGGTTTTCTCGTTATGACACCTATATGATAACACCTGTCTATAATACAGCTTTACACTCCCTTATTGAGGCTAAAGAG : AGTAAAGTGGCAACACAGATATTCAAATCAATGGTGTCTTCTGGTGTTACACCTGATGCTGCAACATATAATATCATGATTGACGGCTGTAGCATTGTTGGATGTTTCAGATCTGCACTTACCCTGATCTCTATGATGTTCCGCACTGGTTTCAACCCTCAAGCAGTGACTTTAACTGGCCTGTTAAAG : ATATTGTTGAGATCTGAGGACTTTGATGGAGCA</gDNA_template>
            <first_frame> A  E  K  H  *  V  H  L  L  *  S  F  *  G  G  P  S  M  M  L  C  M  L  V  H  K  F  K  I  V  I  W  L  N  S  *  C  Y  R :   C  K  L  L  V  C  N  H  Q  G  V  H  M  M  A  S  L  G  Q  L  L  P  Q  E  A  L  V  T  G  W  K  C :   *  R  L  *  K  R  K  I  L  S  L  M  I  Q  L  L  L  F  *  Q  S  C  A  A  E  S  W  N  S  I  *  Q  R  L  S  W  M  R  C  P  K  S  I  I  L  V  L  I  M  L  F  L  K  H  V  M  F  W :   I  G  P  N  E  Q  F  K  Y  W  L  R  *  K  G  *  I  F  S  Q  I  S  G  H  M  S  C  Y  S  H  C  L  V  M  *  M  H  L  M  K  R  A  T  C  C  H  K  W  M  L  L  K  G  *  M  L  *  K  W  T  *  *  G  M  A  F  R  T  V  I  C  R  *  G  M  C :   *  K  R  L  E  Q  K  G  W  *  R  S  *  F  N  I  Y  V  L  Q  R  I  G  F  L  V  M  T  P  I  *  *  H  L  S  I  I  Q  L  Y  T  P  L  L  R  L  K  R :   V  K  W  Q  H  R  Y  S  N  Q  W  C  L  L  V  L  H  L  M  L  Q  H  I  I  S  *  L  T  A  V  A  L  L  D  V  S  D  L  H  L  P  *  S  L  *  C  S  A  L  V  S  T  L  K  Q  *  L  *  L  A  C  *  R :   Y  C  *  D  L  R  T  L  M  E   </first_frame>
            <second_frame>  Q  K  N  I  K  C  I  C  C  E  A  F  E  V  V  L  Q  *  C  Y  A  C  L  C  T  S  S  K  L  *  F  G  *  T  V  D  V  T   : D  A  N  S  W  F  A  T  I  R  E  Y  I  *  W  L  H  *  G  N  C  Y  H  K  R  L  *  *  R  G  G  S   : A  K  G  Y  E  R  E  K  Y  *  A  S  *  F  N  S  C  C  F  S  S  H  V  Q  Q  R  V  G  T  Q  S  S  R  G  F  L  G  *  D  V  Q  N  P  *  S  S  S  L  *  C  F  S  *  S  M  *  C  S   : G  S  A  R  T  S  S  S  N  I  G  *  D  E  K  V  E  S  S  A  K  Y  Q  D  I  *  V  A  I  L  T  V  W  *  C  K  C  T  L  *  R  G  Q  H  A  V  T  S  G  C  C  *  K  D  K  C  Y  R  N  G  H  D  E  E  W  H  S  A  Q  S  S  V  V  E  E  C   : V  E  S  A  W  N  R  R  D  G  K  G  A  D  S  I  F  T  C  C  R  E  S  V  F  S  L  *  H  L  Y  D  N  T  C  L  *  Y  S  F  T  L  P  Y  *  G  *  R   : E  *  S  G  N  T  D  I  Q  I  N  G  V  F  W  C  Y  T  *  C  C  N  I  *  Y  H  D  *  R  L  *  H  C  W  M  F  Q  I  C  T  Y  P  D  L  Y  D  V  P  H  W  F  Q  P  S  S  S  D  F  N  W  P  V  K   : D  I  V  E  I  *  G  L  *  W  S  </second_frame>
            <third_frame>   R  K  T  L  S  A  S  V  V  K  L  L  R  W  S  F  N  D  V  M  H  A  C  A  Q  V  Q  N  C  D  L  A  E  Q  L  M  L  Q  :  M  Q  T  L  G  L  Q  P  S  G  S  T  Y  D  G  F  I  R  A  I  A  T  T  R  G  F  S  D  G  V  E  V  :  L  K  V  M  K  E  K  N  I  K  P  H  D  S  T  L  A  V  L  A  V  M  C  S  R  E  L  E  L  N  L  A  E  A  F  L  D  E  M  S  K  I  H  N  P  R  P  Y  N  A  F  L  E  A  C  D  V  L  :  D  R  P  E  R  A  V  Q  I  L  A  K  M  K  R  L  N  L  Q  P  N  I  R  T  Y  E  L  L  F  S  L  F  G  N  V  N  A  P  Y  E  E  G  N  M  L  S  Q  V  D  V  A  K  R  I  N  A  I  E  M  D  M  M  R  N  G  I  P  H  S  H  L  S  L  R  N  V  :  L  K  A  L  G  T  E  G  M  V  K  E  L  I  Q  Y  L  R  A  A  E  N  R  F  S  R  Y  D  T  Y  M  I  T  P  V  Y  N  T  A  L  H  S  L  I  E  A  K  E  :  S  K  V  A  T  Q  I  F  K  S  M  V  S  S  G  V  T  P  D  A  A  T  Y  N  I  M  I  D  G  C  S  I  V  G  C  F  R  S  A  L  T  L  I  S  M  M  F  R  T  G  F  N  P  Q  A  V  T  L  T  G  L  L  K  :  I  L  L  R  S  E  D  F  D  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6738" stop="6625"/>
                    <exon start="6394" stop="6299"/>
                    <exon start="6193" stop="6020"/>
                    <exon start="5478" stop="5251"/>
                    <exon start="3315" stop="3172"/>
                    <exon start="3078" stop="2890"/>
                    <exon start="2288" stop="2256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>978</number_coding_nucleotides>
                  <number_encoded_amino_acids>326</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKTLSASVVKLLRWSFNDVMHACAQVQNCDLAEQLMLQMQTLGLQPSGSTYDGFIRAIATTRGFSDGVEVLKVMKEKNIKPHDSTLAVLAVMCSRELELNLAEAFLDEMSKIHNPRPYNAFLEACDVLDRPERAVQILAKMKRLNLQPNIRTYELLFSLFGNVNAPYEEGNMLSQVDVAKRINAIEMDMMRNGIPHSHLSLRNVLKALGTEGMVKELIQYLRAAENRFSRYDTYMITPVYNTALHSLIEAKESKVATQIFKSMVSSGVTPDAATYNIMIDGCSIVGCFRSALTLISMMFRTGFNPQAVTLTGLLKILLRSEDFDGA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="10140" PGL_stop="7960"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10140" e_stop="9942"/>
            <exon e_start="9853" e_stop="9793"/>
            <exon e_start="9638" e_stop="9581"/>
            <exon e_start="9316" e_stop="9138"/>
            <exon e_start="8824" e_stop="8717"/>
            <exon e_start="8133" e_stop="7960"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.227" acc_prob="0.858" e_score="0.980"/>
          <exon-intron don_prob="0.394" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="10140" e_stop="9942" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.227" acc_prob="0.858">
            <gDNA_intron_boundary i_start="9941" i_stop="9854" i_length="88"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9853" e_stop="9793" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.394" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9792" i_stop="9639" i_length="154"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9638" e_stop="9581" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.973">
            <gDNA_intron_boundary i_start="9580" i_stop="9317" i_length="264"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9316" e_stop="9138" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="0.978" acc_prob="0.963">
            <gDNA_intron_boundary i_start="9137" i_stop="8825" i_length="313"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8824" e_stop="8717" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8716" i_stop="8134" i_length="583"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="8133" e_stop="7960" e_length="174"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10140" stop="9942"/>
              <exon start="9853" stop="9793"/>
              <exon start="9638" stop="9581"/>
              <exon start="9316" stop="9138"/>
              <exon start="8824" stop="8717"/>
              <exon start="8133" stop="7960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341440" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGAAAGCAAAAAACCAGAGTCGCCGGAAACACTGTCCTCGCGGGCGGGCCTAGCTGTAGTCGCAGTGGTCGGACTGATTACAATTTCCGGACTAACCGTTCTGGAAAATTTCTTCGTGCTGCTAGTACTATGAACTCATCGAACCGAAAGTTTTAAGTTATTTCACAGGAAGCATTGAGAAGATGCCTAAACTTAT : ATCAAAGGTTCGTGCCAGTTCGATATTGCAAAGATTTTCAAAATTAAATGCTATTCGAAAT : GGAGGAAAGGAAGCTGGAGGCTACAGCCAAGCTATGAGAACTCTTACTACCTCAAATG : GGCATGTCGGGGAGCCGGTTTCAAGATTAGGGCAAAAACAAATTGTCGATGCACTTGTCTTGGGAGAGAGAAGAAGAGCTGTTAGTCTCCTGTATGAGTTTAGTCTTGGAAACAACAAATTGAGTGCTGATGATTTTGCTTCTATACTGCAAAGTTGTGCAAGACTGCCTGATCCATTA : TTTGTGATGGAAACTTGGAAGATCATGGAGGAGAAGGAAATCAACATTAGTGACAAGTGTTATGCTCTTGCCGTTCGAGCACTCTGTAAAGGGGGTTACTTAAAGGAG : GCACTCAGTTTGATGAGTATCATGGCAGAAAACACAAATTGTTATTCTATGTTGCCAATTTATAACAACTTCCTAGCTGCTTGTTATGAAACACAAACAATAGATTATGCTAATGAATGTATGGATTTGATGGAGCATCAGATGGTGGGAAAGAATGAGATAACATATGCTCAG</gDNA_template>
            <first_frame> Q  R  K  Q  K  T  R  V  A  G  N  T  V  L  A  G  G  P  S  C  S  R  S  G  R  T  D  Y  N  F  R  T  N  R  S  G  K  F  L  R  A  A  S  T  M  N  S  S  N  R  K  F  *  V  I  S  Q  E  A  L  R  R  C  L  N  L   : Y  Q  R  F  V  P  V  R  Y  C  K  D  F  Q  N  *  M  L  F  E  M :   E  E  R  K  L  E  A  T  A  K  L  *  E  L  L  L  P  Q  M  :  G  M  S  G  S  R  F  Q  D  *  G  K  N  K  L  S  M  H  L  S  W  E  R  E  E  E  L  L  V  S  C  M  S  L  V  L  E  T  T  N  *  V  L  M  I  L  L  L  Y  C  K  V  V  Q  D  C  L  I  H  Y :   L  *  W  K  L  G  R  S  W  R  R  R  K  S  T  L  V  T  S  V  M  L  L  P  F  E  H  S  V  K  G  V  T  *  R  R :   H  S  V  *  *  V  S  W  Q  K  T  Q  I  V  I  L  C  C  Q  F  I  T  T  S  *  L  L  V  M  K  H  K  Q  *  I  M  L  M  N  V  W  I  *  W  S  I  R  W  W  E  R  M  R  *  H  M  L   </first_frame>
            <second_frame>  R  E  S  K  K  P  E  S  P  E  T  L  S  S  R  A  G  L  A  V  V  A  V  V  G  L  I  T  I  S  G  L  T  V  L  E  N  F  F  V  L  L  V  L  *  T  H  R  T  E  S  F  K  L  F  H  R  K  H  *  E  D  A  *  T  Y  :  I  K  G  S  C  Q  F  D  I  A  K  I  F  K  I  K  C  Y  S  K   : W  R  K  G  S  W  R  L  Q  P  S  Y  E  N  S  Y  Y  L  K  W :   A  C  R  G  A  G  F  K  I  R  A  K  T  N  C  R  C  T  C  L  G  R  E  K  K  S  C  *  S  P  V  *  V  *  S  W  K  Q  Q  I  E  C  *  *  F  C  F  Y  T  A  K  L  C  K  T  A  *  S  I   : I  C  D  G  N  L  E  D  H  G  G  E  G  N  Q  H  *  *  Q  V  L  C  S  C  R  S  S  T  L  *  R  G  L  L  K  G   : G  T  Q  F  D  E  Y  H  G  R  K  H  K  L  L  F  Y  V  A  N  L  *  Q  L  P  S  C  L  L  *  N  T  N  N  R  L  C  *  *  M  Y  G  F  D  G  A  S  D  G  G  K  E  *  D  N  I  C  S  </second_frame>
            <third_frame>   E  K  A  K  N  Q  S  R  R  K  H  C  P  R  G  R  A  *  L  *  S  Q  W  S  D  *  L  Q  F  P  D  *  P  F  W  K  I  S  S  C  C  *  Y  Y  E  L  I  E  P  K  V  L  S  Y  F  T  G  S  I  E  K  M  P  K  L  I :   S  K  V  R  A  S  S  I  L  Q  R  F  S  K  L  N  A  I  R  N  :  G  G  K  E  A  G  G  Y  S  Q  A  M  R  T  L  T  T  S  N   : G  H  V  G  E  P  V  S  R  L  G  Q  K  Q  I  V  D  A  L  V  L  G  E  R  R  R  A  V  S  L  L  Y  E  F  S  L  G  N  N  K  L  S  A  D  D  F  A  S  I  L  Q  S  C  A  R  L  P  D  P  L  :  F  V  M  E  T  W  K  I  M  E  E  K  E  I  N  I  S  D  K  C  Y  A  L  A  V  R  A  L  C  K  G  G  Y  L  K  E  :  A  L  S  L  M  S  I  M  A  E  N  T  N  C  Y  S  M  L  P  I  Y  N  N  F  L  A  A  C  Y  E  T  Q  T  I  D  Y  A  N  E  C  M  D  L  M  E  H  Q  M  V  G  K  N  E  I  T  Y  A  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10012" stop="9942"/>
                    <exon start="9853" stop="9793"/>
                    <exon start="9638" stop="9581"/>
                    <exon start="9316" stop="9138"/>
                    <exon start="8824" stop="8717"/>
                    <exon start="8133" stop="7960"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>651</number_coding_nucleotides>
                  <number_encoded_amino_acids>217</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YYELIEPKVLSYFTGSIEKMPKLISKVRASSILQRFSKLNAIRNGGKEAGGYSQAMRTLTTSNGHVGEPVSRLGQKQIVDALVLGERRRAVSLLYEFSLGNNKLSADDFASILQSCARLPDPLFVMETWKIMEEKEINISDKCYALAVRALCKGGYLKEALSLMSIMAENTNCYSMLPIYNNFLAACYETQTIDYANECMDLMEHQMVGKNEITYAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="14136" PGL_stop="11217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14136" e_stop="14125"/>
            <exon e_start="14038" e_stop="13782"/>
            <exon e_start="13572" e_stop="13486"/>
            <exon e_start="13390" e_stop="13160"/>
            <exon e_start="12535" e_stop="12457"/>
            <exon e_start="12376" e_stop="12313"/>
            <exon e_start="11644" e_stop="11217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="0.988"/>
          <exon-intron don_prob="0.985" acc_prob="0.655" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14136" e_stop="14125" e_length="12"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.997">
            <gDNA_intron_boundary i_start="14124" i_stop="14039" i_length="86"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="14038" e_stop="13782" e_length="257"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13781" i_stop="13573" i_length="209"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13572" e_stop="13486" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.655">
            <gDNA_intron_boundary i_start="13485" i_stop="13391" i_length="95"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13390" e_stop="13160" e_length="231"/>
          </exon>
          <intron i_serial="4" don_prob="0.886" acc_prob="0.984">
            <gDNA_intron_boundary i_start="13159" i_stop="12536" i_length="624"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="12535" e_stop="12457" e_length="79"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="12456" i_stop="12377" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="12376" e_stop="12313" e_length="64"/>
          </exon>
          <intron i_serial="6" don_prob="0.927" acc_prob="1.000">
            <gDNA_intron_boundary i_start="12312" i_stop="11645" i_length="668"/>
          </intron>
          <exon e_serial="7" e_score="0.986">
            <gDNA_exon_boundary e_start="11644" e_stop="11217" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14136" stop="14125"/>
              <exon start="14038" stop="13782"/>
              <exon start="13572" stop="13486"/>
              <exon start="13390" stop="13160"/>
              <exon start="12535" stop="12457"/>
              <exon start="12376" stop="12313"/>
              <exon start="11644" stop="11217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312528" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGACCCAAAA : GAATCTCTACCTCAAGAGTATGCTAGAATATTTGCATTTGACAATTTTAATAGGACGCAAAAGCATGTACTGTCTAGAGCCCGAGAGATGGAACAGAACGTTGATGAATGTATACCAGCTGGTTCATATGCAAGGCTCCATATCCGGGAAGTTCCAAATGGTGTGGCAAACAAGTTAAATCTTGTAACGAAGACAATGCCTGTGATCCTGTGTGGTCTGATGCAGCATGAGTCTAAAATTTCTGTCCTTCACTTCAG : CTTAAAAAAGCACGACAGTTACACTGATCCAATAAAATCTAAAGAAGAGATGATATTCAATCTTGGGTTTCGCCAGTTTGTTGCAAG : GCCCATATTTTCTTCCGATAGTTTTAACGCTGATAAGCAAAAAATGGAGAGATTTCTCCATCCCGGGCGTTTTTCAGTAGCTTCAGTATATGCTCCTATTTCATTTCCTCCCCTTCCTTTAATTGCCCTGAAGATTAAAGACGATGCAACTCCTGCCACTGTTGCTGCCATTGGCTCTTTGAGAAGTATTGACCCAGATAGGATTATTCTAAAGAAAATTATTTTAACCGG : TTACCCTCAACGAGTATCAAAACAGAAAGCGACGGTAAGATACATGTTTCATAACCCAGAGGATGTCAGATGGTTCAAG : CCTGTTGAAGTTTGGTCAAAGTGTGGTCGTCGTGGTCGCATCAAGGAACCTGTTGGTACACATG : GGGCAATGAAGTGCATCTTGAATGGAGTCCTCCAACAGCATGACACGTTATGCATGAGTTTGTTTAAACGCACATACCCCAGGTGGCCGGAAAAGTGGTTCCCGATGACAGATGCTTAAGAGAAAGGTCTAGTGGTGGCCCAGGTTTATGGTTTCTCCCAAGTGTGAAGGGAGAAGAAATCACATTTGCTGCACATGGGAATGAAGCTCTGGTTCAGAATGAGTTACTATTCAAGTTTTGTACGAGGGAAATTTTTTACTTTGTTTACTTTTCTTTCTCCCCAAAGGTTTCTTCAGAAACCAGTTTATAGTGTATAATATATGGTAGCTCATTTTTTCGTGCCACAACACAATCTTGTATCACTTATAAATTAGTTCCTAACCGCACAATGATTTTTTTTTTTTGAATCGTTAACAAATTTTATAGCA</gDNA_template>
            <first_frame> W  D  P  K  :  E  S  L  P  Q  E  Y  A  R  I  F  A  F  D  N  F  N  R  T  Q  K  H  V  L  S  R  A  R  E  M  E  Q  N  V  D  E  C  I  P  A  G  S  Y  A  R  L  H  I  R  E  V  P  N  G  V  A  N  K  L  N  L  V  T  K  T  M  P  V  I  L  C  G  L  M  Q  H  E  S  K  I  S  V  L  H  F  S :   L  K  K  H  D  S  Y  T  D  P  I  K  S  K  E  E  M  I  F  N  L  G  F  R  Q  F  V  A  R :   P  I  F  S  S  D  S  F  N  A  D  K  Q  K  M  E  R  F  L  H  P  G  R  F  S  V  A  S  V  Y  A  P  I  S  F  P  P  L  P  L  I  A  L  K  I  K  D  D  A  T  P  A  T  V  A  A  I  G  S  L  R  S  I  D  P  D  R  I  I  L  K  K  I  I  L  T  G :   Y  P  Q  R  V  S  K  Q  K  A  T  V  R  Y  M  F  H  N  P  E  D  V  R  W  F  K  :  P  V  E  V  W  S  K  C  G  R  R  G  R  I  K  E  P  V  G  T  H   : G  A  M  K  C  I  L  N  G  V  L  Q  Q  H  D  T  L  C  M  S  L  F  K  R  T  Y  P  R  W  P  E  K  W  F  P  M  T  D  A  *  E  K  G  L  V  V  A  Q  V  Y  G  F  S  Q  V  *  R  E  K  K  S  H  L  L  H  M  G  M  K  L  W  F  R  M  S  Y  Y  S  S  F  V  R  G  K  F  F  T  L  F  T  F  L  S  P  Q  R  F  L  Q  K  P  V  Y  S  V  *  Y  M  V  A  H  F  F  V  P  Q  H  N  L  V  S  L  I  N  *  F  L  T  A  Q  *  F  F  F  F  E  S  L  T  N  F  I  A </first_frame>
            <second_frame>  G  T  Q  K :   N  L  Y  L  K  S  M  L  E  Y  L  H  L  T  I  L  I  G  R  K  S  M  Y  C  L  E  P  E  R  W  N  R  T  L  M  N  V  Y  Q  L  V  H  M  Q  G  S  I  S  G  K  F  Q  M  V  W  Q  T  S  *  I  L  *  R  R  Q  C  L  *  S  C  V  V  *  C  S  M  S  L  K  F  L  S  F  T  S   : A  *  K  S  T  T  V  T  L  I  Q  *  N  L  K  K  R  *  Y  S  I  L  G  F  A  S  L  L  Q   : G  P  Y  F  L  P  I  V  L  T  L  I  S  K  K  W  R  D  F  S  I  P  G  V  F  Q  *  L  Q  Y  M  L  L  F  H  F  L  P  F  L  *  L  P  *  R  L  K  T  M  Q  L  L  P  L  L  L  P  L  A  L  *  E  V  L  T  Q  I  G  L  F  *  R  K  L  F  *  P   : V  T  L  N  E  Y  Q  N  R  K  R  R  *  D  T  C  F  I  T  Q  R  M  S  D  G  S  S :   L  L  K  F  G  Q  S  V  V  V  V  V  A  S  R  N  L  L  V  H  M  :  G  Q  *  S  A  S  *  M  E  S  S  N  S  M  T  R  Y  A  *  V  C  L  N  A  H  T  P  G  G  R  K  S  G  S  R  *  Q  M  L  K  R  K  V  *  W  W  P  R  F  M  V  S  P  K  C  E  G  R  R  N  H  I  C  C  T  W  E  *  S  S  G  S  E  *  V  T  I  Q  V  L  Y  E  G  N  F  L  L  C  L  L  F  F  L  P  K  G  F  F  R  N  Q  F  I  V  Y  N  I  W  *  L  I  F  S  C  H  N  T  I  L  Y  H  L  *  I  S  S  *  P  H  N  D  F  F  F  L  N  R  *  Q  I  L  *   </second_frame>
            <third_frame>   G  P  K   : R  I  S  T  S  R  V  C  *  N  I  C  I  *  Q  F  *  *  D  A  K  A  C  T  V  *  S  P  R  D  G  T  E  R  *  *  M  Y  T  S  W  F  I  C  K  A  P  Y  P  G  S  S  K  W  C  G  K  Q  V  K  S  C  N  E  D  N  A  C  D  P  V  W  S  D  A  A  *  V  *  N  F  C  P  S  L  Q  :  L  K  K  A  R  Q  L  H  *  S  N  K  I  *  R  R  D  D  I  Q  S  W  V  S  P  V  C  C  K  :  A  H  I  F  F  R  *  F  *  R  *  *  A  K  N  G  E  I  S  P  S  R  A  F  F  S  S  F  S  I  C  S  Y  F  I  S  S  P  S  F  N  C  P  E  D  *  R  R  C  N  S  C  H  C  C  C  H  W  L  F  E  K  Y  *  P  R  *  D  Y  S  K  E  N  Y  F  N  R  :  L  P  S  T  S  I  K  T  E  S  D  G  K  I  H  V  S  *  P  R  G  C  Q  M  V  Q   : A  C  *  S  L  V  K  V  W  S  S  W  S  H  Q  G  T  C  W  Y  T  W :   G  N  E  V  H  L  E  W  S  P  P  T  A  *  H  V  M  H  E  F  V  *  T  H  I  P  Q  V  A  G  K  V  V  P  D  D  R  C  L  R  E  R  S  S  G  G  P  G  L  W  F  L  P  S  V  K  G  E  E  I  T  F  A  A  H  G  N  E  A  L  V  Q  N  E  L  L  F  K  F  C  T  R  E  I  F  Y  F  V  Y  F  S  F  S  P  K  V  S  S  E  T  S  L  *  C  I  I  Y  G  S  S  F  F  R  A  T  T  Q  S  C  I  T  Y  K  L  V  P  N  R  T  M  I  F  F  F  *  I  V  N  K  F  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14136" stop="14125"/>
                    <exon start="14038" stop="13782"/>
                    <exon start="13572" stop="13486"/>
                    <exon start="13390" stop="13160"/>
                    <exon start="12535" stop="12457"/>
                    <exon start="12376" stop="12313"/>
                    <exon start="11644" stop="11526"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>846</number_coding_nucleotides>
                  <number_encoded_amino_acids>282</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WDPKESLPQEYARIFAFDNFNRTQKHVLSRAREMEQNVDECIPAGSYARLHIREVPNGVANKLNLVTKTMPVILCGLMQHESKISVLHFSLKKHDSYTDPIKSKEEMIFNLGFRQFVARPIFSSDSFNADKQKMERFLHPGRFSVASVYAPISFPPLPLIALKIKDDATPATVAAIGSLRSIDPDRIILKKIILTGYPQRVSKQKATVRYMFHNPEDVRWFKPVEVWSKCGRRGRIKEPVGTHGAMKCILNGVLQQHDTLCMSLFKRTYPRWPEKWFPMTDA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="19978" PGL_stop="15121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19978" e_stop="19838"/>
            <exon e_start="19763" e_stop="19687"/>
            <exon e_start="19424" e_stop="19347"/>
            <exon e_start="18961" e_stop="18830"/>
            <exon e_start="18138" e_stop="18088"/>
            <exon e_start="17994" e_stop="17860"/>
            <exon e_start="17752" e_stop="17630"/>
            <exon e_start="17519" e_stop="17442"/>
            <exon e_start="16603" e_stop="16511"/>
            <exon e_start="16436" e_stop="16314"/>
            <exon e_start="15689" e_stop="15606"/>
            <exon e_start="15369" e_stop="15271"/>
            <exon e_start="15175" e_stop="15121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="0.986"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.108" acc_prob="0.670" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.121" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.966" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.165" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.797" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.898" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="19978" e_stop="19838" e_length="141"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19837" i_stop="19764" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19763" e_stop="19687" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="19686" i_stop="19425" i_length="262"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="19424" e_stop="19347" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="19346" i_stop="18962" i_length="385"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18961" e_stop="18830" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.108" acc_prob="0.670">
            <gDNA_intron_boundary i_start="18829" i_stop="18139" i_length="691"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18138" e_stop="18088" e_length="51"/>
          </exon>
          <intron i_serial="5" don_prob="0.994" acc_prob="0.986">
            <gDNA_intron_boundary i_start="18087" i_stop="17995" i_length="93"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="17994" e_stop="17860" e_length="135"/>
          </exon>
          <intron i_serial="6" don_prob="0.121" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17859" i_stop="17753" i_length="107"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17752" e_stop="17630" e_length="123"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="17629" i_stop="17520" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="17519" e_stop="17442" e_length="78"/>
          </exon>
          <intron i_serial="8" don_prob="0.995" acc_prob="0.966">
            <gDNA_intron_boundary i_start="17441" i_stop="16604" i_length="838"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="16603" e_stop="16511" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.932" acc_prob="0.165">
            <gDNA_intron_boundary i_start="16510" i_stop="16437" i_length="74"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="16436" e_stop="16314" e_length="123"/>
          </exon>
          <intron i_serial="10" don_prob="0.993" acc_prob="0.797">
            <gDNA_intron_boundary i_start="16313" i_stop="15690" i_length="624"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="15689" e_stop="15606" e_length="84"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="15605" i_stop="15370" i_length="236"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="15369" e_stop="15271" e_length="99"/>
          </exon>
          <intron i_serial="12" don_prob="0.981" acc_prob="0.898">
            <gDNA_intron_boundary i_start="15270" i_stop="15176" i_length="95"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="15175" e_stop="15121" e_length="55"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19978" stop="19838"/>
              <exon start="19763" stop="19687"/>
              <exon start="19424" stop="19347"/>
              <exon start="18961" stop="18830"/>
              <exon start="18138" stop="18088"/>
              <exon start="17994" stop="17860"/>
              <exon start="17752" stop="17630"/>
              <exon start="17519" stop="17442"/>
              <exon start="16603" stop="16511"/>
              <exon start="16436" stop="16314"/>
              <exon start="15689" stop="15606"/>
              <exon start="15369" stop="15271"/>
              <exon start="15175" stop="15121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323600" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTATTGTTAGAAGAAAAATTGATTGCTGTTTACTCAATCGTAGAGAAGATGGGAGGTGCTCGAGCTCAAGTAAATAAAGCTCACAAAACTCGATTTGCTTCAAAGTCATCTCGCAATGTTCATAAAGTTTCTTCAAAAG : ATAAGAGTAGAATTGCGAAACCTGATCGCAATCTCACTAAGGGAGCTCGGGCAGCTCGGCTTCAGCGTAATAAGATG : ATGAGGGAGCAGAAAAGAGATGCTCTTTTGAAAGAGAAAAGAGCTTCATCTGGATCAAATAGTCCGCCCAGAGTTATT : GTTCTGTTTGGCCTATCCCGATCAGTCGACCTTAGTGCGCTTGAACAAGATCTCCTGAAGCTATTGTCCGCAGATGGAACTGTTGTTGTGTATCCAGCAGTTGCTTCCTCAGAATATAAGTTGAGAGCAACG : GTTTTAAAAGCACCTCATGGTGATCTCTTGGCATGTATGGAGATGGCCAAG : GTTGCTGATCTGATTGCTTTTGTCACATCTGCAAGTTCCTCTAATGAAGAAGATTGTTATATAGATGCATTTGGATCTCACTGCCTTTCGATCTTTAGAGCTCTTGGTCTTCCTAGTACAGCAGTACTGATTCGT : GATCTACCCAGTGAGTTAAAAAAGAAAAACGATTCAAAGAAGGTTTGTACATCTAGCCTGTCTTCTGAATTTCCCGAGGATTGTAAGTTCTATCCAGCAGATACAAAGGATGATTTGCACAAG : TTCTTGTGGCTTTTCAAGGAGCAAAGGTTCTCAGTACCACATTGGCGTAATCAGCGGCCATATCTAATGGCTCAAAAG : GTCGACGTGGTAGCTGATAATTCCATTTCTGGAAAATGTACACTCCTCCTCTCTGGTTATATTCGTGCTCGTAGCCTGTCGGTGAATCAGCTG : GTTCACATAACAGGTGCTGGAGATTTTCAGTTATCCAAGATCGAACTTCTCAAGGATCCATGTTCCCTGAATGTGAGAAAAGGAGGAGACTTAATGGAGTCTGATGACATGAATGAGGCACAG : GTCATCAGTTGCTTGACTCCTGACCCTATGAAGCAAGAGCCTTTACTTGTTGAGAATGTCCCTGATCCATTGGCTGGGGAACAG : ACATGGCCTACTGAGGCAGAAATGGCTGAAGCAGAAAGAAATCAAGAGGAAAGAAAGCTGAAAAGGAAAACTCTTCCTAAGGGCACTTCTGAATATCAG : GCTGCTTGGATTGTAGAAGATTCAGATGCTGATGTTTCTGAGAGCGAGAATGAAG</gDNA_template>
            <first_frame> V  Y  C  *  K  K  N  *  L  L  F  T  Q  S  *  R  R  W  E  V  L  E  L  K  *  I  K  L  T  K  L  D  L  L  Q  S  H  L  A  M  F  I  K  F  L  Q  K  :  I  R  V  E  L  R  N  L  I  A  I  S  L  R  E  L  G  Q  L  G  F  S  V  I  R  * :   *  G  S  R  K  E  M  L  F  *  K  R  K  E  L  H  L  D  Q  I  V  R  P  E  L  L :   F  C  L  A  Y  P  D  Q  S  T  L  V  R  L  N  K  I  S  *  S  Y  C  P  Q  M  E  L  L  L  C  I  Q  Q  L  L  P  Q  N  I  S  *  E  Q  R :   F  *  K  H  L  M  V  I  S  W  H  V  W  R  W  P  R :   L  L  I  *  L  L  L  S  H  L  Q  V  P  L  M  K  K  I  V  I  *  M  H  L  D  L  T  A  F  R  S  L  E  L  L  V  F  L  V  Q  Q  Y  *  F  V :   I  Y  P  V  S  *  K  R  K  T  I  Q  R  R  F  V  H  L  A  C  L  L  N  F  P  R  I  V  S  S  I  Q  Q  I  Q  R  M  I  C  T  S :   S  C  G  F  S  R  S  K  G  S  Q  Y  H  I  G  V  I  S  G  H  I  *  W  L  K  R :   S  T  W  *  L  I  I  P  F  L  E  N  V  H  S  S  S  L  V  I  F  V  L  V  A  C  R  *  I  S  W :   F  T  *  Q  V  L  E  I  F  S  Y  P  R  S  N  F  S  R  I  H  V  P  *  M  *  E  K  E  E  T  *  W  S  L  M  T  *  M  R  H  R :   S  S  V  A  *  L  L  T  L  *  S  K  S  L  Y  L  L  R  M  S  L  I  H  W  L  G  N  R :   H  G  L  L  R  Q  K  W  L  K  Q  K  E  I  K  R  K  E  S  *  K  G  K  L  F  L  R  A  L  L  N  I  R :   L  L  G  L  *  K  I  Q  M  L  M  F  L  R  A  R  M  K </first_frame>
            <second_frame>  F  I  V  R  R  K  I  D  C  C  L  L  N  R  R  E  D  G  R  C  S  S  S  S  K  *  S  S  Q  N  S  I  C  F  K  V  I  S  Q  C  S  *  S  F  F  K  R :   *  E  *  N  C  E  T  *  S  Q  S  H  *  G  S  S  G  S  S  A  S  A  *  *  D   : D  E  G  A  E  K  R  C  S  F  E  R  E  K  S  F  I  W  I  K  *  S  A  Q  S  Y   : C  S  V  W  P  I  P  I  S  R  P  *  C  A  *  T  R  S  P  E  A  I  V  R  R  W  N  C  C  C  V  S  S  S  C  F  L  R  I  *  V  E  S  N   : G  F  K  S  T  S  W  *  S  L  G  M  Y  G  D  G  Q   : G  C  *  S  D  C  F  C  H  I  C  K  F  L  *  *  R  R  L  L  Y  R  C  I  W  I  S  L  P  F  D  L  *  S  S  W  S  S  *  Y  S  S  T  D  S   : *  S  T  Q  *  V  K  K  E  K  R  F  K  E  G  L  Y  I  *  P  V  F  *  I  S  R  G  L  *  V  L  S  S  R  Y  K  G  *  F  A  Q   : V  L  V  A  F  Q  G  A  K  V  L  S  T  T  L  A  *  S  A  A  I  S  N  G  S  K   : G  R  R  G  S  *  *  F  H  F  W  K  M  Y  T  P  P  L  W  L  Y  S  C  S  *  P  V  G  E  S  A   : G  S  H  N  R  C  W  R  F  S  V  I  Q  D  R  T  S  Q  G  S  M  F  P  E  C  E  K  R  R  R  L  N  G  V  *  *  H  E  *  G  T   : G  H  Q  L  L  D  S  *  P  Y  E  A  R  A  F  T  C  *  E  C  P  *  S  I  G  W  G  T   : D  M  A  Y  *  G  R  N  G  *  S  R  K  K  S  R  G  K  K  A  E  K  E  N  S  S  *  G  H  F  *  I  S   : G  C  L  D  C  R  R  F  R  C  *  C  F  *  E  R  E  *   </second_frame>
            <third_frame>   L  L  L  E  E  K  L  I  A  V  Y  S  I  V  E  K  M  G  G  A  R  A  Q  V  N  K  A  H  K  T  R  F  A  S  K  S  S  R  N  V  H  K  V  S  S  K   : D  K  S  R  I  A  K  P  D  R  N  L  T  K  G  A  R  A  A  R  L  Q  R  N  K  M  :  M  R  E  Q  K  R  D  A  L  L  K  E  K  R  A  S  S  G  S  N  S  P  P  R  V  I  :  V  L  F  G  L  S  R  S  V  D  L  S  A  L  E  Q  D  L  L  K  L  L  S  A  D  G  T  V  V  V  Y  P  A  V  A  S  S  E  Y  K  L  R  A  T  :  V  L  K  A  P  H  G  D  L  L  A  C  M  E  M  A  K  :  V  A  D  L  I  A  F  V  T  S  A  S  S  S  N  E  E  D  C  Y  I  D  A  F  G  S  H  C  L  S  I  F  R  A  L  G  L  P  S  T  A  V  L  I  R  :  D  L  P  S  E  L  K  K  K  N  D  S  K  K  V  C  T  S  S  L  S  S  E  F  P  E  D  C  K  F  Y  P  A  D  T  K  D  D  L  H  K  :  F  L  W  L  F  K  E  Q  R  F  S  V  P  H  W  R  N  Q  R  P  Y  L  M  A  Q  K  :  V  D  V  V  A  D  N  S  I  S  G  K  C  T  L  L  L  S  G  Y  I  R  A  R  S  L  S  V  N  Q  L  :  V  H  I  T  G  A  G  D  F  Q  L  S  K  I  E  L  L  K  D  P  C  S  L  N  V  R  K  G  G  D  L  M  E  S  D  D  M  N  E  A  Q  :  V  I  S  C  L  T  P  D  P  M  K  Q  E  P  L  L  V  E  N  V  P  D  P  L  A  G  E  Q  :  T  W  P  T  E  A  E  M  A  E  A  E  R  N  Q  E  E  R  K  L  K  R  K  T  L  P  K  G  T  S  E  Y  Q  :  A  A  W  I  V  E  D  S  D  A  D  V  S  E  S  E  N  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19976" stop="19838"/>
                    <exon start="19763" stop="19687"/>
                    <exon start="19424" stop="19347"/>
                    <exon start="18961" stop="18830"/>
                    <exon start="18138" stop="18088"/>
                    <exon start="17994" stop="17860"/>
                    <exon start="17752" stop="17630"/>
                    <exon start="17519" stop="17442"/>
                    <exon start="16603" stop="16511"/>
                    <exon start="16436" stop="16314"/>
                    <exon start="15689" stop="15606"/>
                    <exon start="15369" stop="15271"/>
                    <exon start="15175" stop="15122"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1266</number_coding_nucleotides>
                  <number_encoded_amino_acids>422</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLEEKLIAVYSIVEKMGGARAQVNKAHKTRFASKSSRNVHKVSSKDKSRIAKPDRNLTKGARAARLQRNKMMREQKRDALLKEKRASSGSNSPPRVIVLFGLSRSVDLSALEQDLLKLLSADGTVVVYPAVASSEYKLRATVLKAPHGDLLACMEMAKVADLIAFVTSASSSNEEDCYIDAFGSHCLSIFRALGLPSTAVLIRDLPSELKKKNDSKKVCTSSLSSEFPEDCKFYPADTKDDLHKFLWLFKEQRFSVPHWRNQRPYLMAQKVDVVADNSISGKCTLLLSGYIRARSLSVNQLVHITGAGDFQLSKIELLKDPCSLNVRKGGDLMESDDMNEAQVISCLTPDPMKQEPLLVENVPDPLAGEQTWPTEAEMAEAERNQEERKLKRKTLPKGTSEYQAAWIVEDSDADVSESENE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="26835" PGL_stop="21806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25657" e_stop="25586"/>
            <exon e_start="25318" e_stop="25161"/>
            <exon e_start="24459" e_stop="24390"/>
            <exon e_start="24299" e_stop="24244"/>
            <exon e_start="23981" e_stop="23856"/>
            <exon e_start="23343" e_stop="23204"/>
            <exon e_start="22889" e_stop="22817"/>
            <exon e_start="22694" e_stop="22620"/>
            <exon e_start="22355" e_stop="21806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.755" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.997" e_score="0.993"/>
          <exon-intron don_prob="0.995" acc_prob="0.869" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.781" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25657" e_stop="25586" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.978">
            <gDNA_intron_boundary i_start="25585" i_stop="25319" i_length="267"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25318" e_stop="25161" e_length="158"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24459" e_stop="24390" e_length="70"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="24299" e_stop="24244" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.755" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24243" i_stop="23982" i_length="262"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="23981" e_stop="23856" e_length="126"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="23855" i_stop="23344" i_length="512"/>
          </intron>
          <exon e_serial="6" e_score="0.993">
            <gDNA_exon_boundary e_start="23343" e_stop="23204" e_length="140"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="0.997">
            <gDNA_intron_boundary i_start="23203" i_stop="22890" i_length="314"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="22889" e_stop="22817" e_length="73"/>
          </exon>
          <intron i_serial="7" don_prob="0.995" acc_prob="0.869">
            <gDNA_intron_boundary i_start="22816" i_stop="22695" i_length="122"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="22694" e_stop="22620" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.781">
            <gDNA_intron_boundary i_start="22619" i_stop="22356" i_length="264"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="22355" e_stop="21806" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25657" stop="25586"/>
              <exon start="25318" stop="25161"/>
              <exon start="24459" stop="24390"/>
              <exon start="24299" stop="24244"/>
              <exon start="23981" stop="23860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23914" stop="23856"/>
              <exon start="23343" stop="23204"/>
              <exon start="22889" stop="22817"/>
              <exon start="22694" stop="22620"/>
              <exon start="22355" stop="21806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAG : ATAAATTGCTTGTGTTCCAGAGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG : GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG : GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTGGGGCAAGAAAGAGAAG : GATTATGATCCATATGAAGAAAATCCTGGGTCCGCCCCTTTTAGTGAGCCCGAGACACAAATTATGCGGAAAATATGTGCATCATTTGAACCACATGTATGGGTTAACGTGCATTCTGGAATGGAG : GCTCTATTTATGCCATATGATCACAAGAACACGACTCCGGAAGGATTACCTTCTCAGAGGATGAGATTAATGCTTGAAAAGTTGAATCGTTTTCAGCTGAATGATCGTTGCTTGGTTGGATCTGGCGGAGGCTCTGTCGG : GTATCTAGCTCACGGGACAGCAACTGATTACATGTATGATATTGCAAGAGTGCCCATGTCTTTCACCTTCGAG : ATCTATGGTGATAGCACGGCCTCGTCAAAGGACTGCTTTAAGATGTTCAATCCCACTGACATCACTACTTTTAAT : AGAGTTCTCAACGACTGGTCTGCTGCATTTTTTACGCTGTTCAGTTTGGGTGGAGTCCAGATTGAGGAACTTCATCCAAATGCAACTGGATCCGGTTTTGAGAAGTGGGTCTCTATCGATGATTATCTGAATGGTTATTTAATGGAAAGGAAAAGTAGGTACGGGAAGAAAATGGAGGTGCTCGAGCTGGGAATGCAGGAGATTAGGACATACTTTAGATTGTTCTTGTTATCATCTGTACTTCTGATGTTTATGTTTTGTTCAAGAATCTCAAAGAGCGGCCGGCAAATTGTTTCTGCTATGTCCTTGTGATTCTGTGATGGTATTCTTTGCTGCCCTTGAGATTTAGCTAGACAGTTTTGAGAGAGCTAGAAGGTGAAAAAAAGGGCATGCCAAAATATTCTTTAGCTGTGTAATTTATTACCTAATTTCTTTTTCCCTTTGATTCTATATAGAATGCTAGAGCTTAGAAAGGCTCTTGTTGATGTTGAATTGTTAACATTGTTTGGTTGAGAGTGTGGATAGATAATATAGATTTTTGTCATGTCCT</gDNA_template>
            <first_frame> S  K  Q  R  V  S  C  R  D  D  C  S  Y  L  L  P  E  Q  E  R  L  R  *  Q  :  I  N  C  L  C  S  R  V  L  G  S  M  G  G  S  S  *  L  R  S  L  R  C  G  F  F  P  F  *  V  K  R  N  S  Y  P  V  H  T  H  L  I  *  I  T  R  L  I  G  L  S  *  R :   L  F  Q  W  R  M  *  M  G  V  N  L  *  K  Q  G  I  S  V  K  E  E  M  :  E  E  E  L  I  L  I  G  I  G  V  W  I  G  A  R  K  R  R :   I  M  I  H  M  K  K  I  L  G  P  P  L  L  V  S  P  R  H  K  L  C  G  K  Y  V  H  H  L  N  H  M  Y  G  L  T  C  I  L  E  W  R :   L  Y  L  C  H  M  I  T  R  T  R  L  R  K  D  Y  L  L  R  G  *  D  *  C  L  K  S  *  I  V  F  S  *  M  I  V  A  W  L  D  L  A  E  A  L  S   : G  I  *  L  T  G  Q  Q  L  I  T  C  M  I  L  Q  E  C  P  C  L  S  P  S  R :   S  M  V  I  A  R  P  R  Q  R  T  A  L  R  C  S  I  P  L  T  S  L  L  L  I :   E  F  S  T  T  G  L  L  H  F  L  R  C  S  V  W  V  E  S  R  L  R  N  F  I  Q  M  Q  L  D  P  V  L  R  S  G  S  L  S  M  I  I  *  M  V  I  *  W  K  G  K  V  G  T  G  R  K  W  R  C  S  S  W  E  C  R  R  L  G  H  T  L  D  C  S  C  Y  H  L  Y  F  *  C  L  C  F  V  Q  E  S  Q  R  A  A  G  K  L  F  L  L  C  P  C  D  S  V  M  V  F  F  A  A  L  E  I  *  L  D  S  F  E  R  A  R  R  *  K  K  G  H  A  K  I  F  F  S  C  V  I  Y  Y  L  I  S  F  S  L  *  F  Y  I  E  C  *  S  L  E  R  L  L  L  M  L  N  C  *  H  C  L  V  E  S  V  D  R  *  Y  R  F  L  S  C  P </first_frame>
            <second_frame>  Q  N  K  G  Y  H  A  E  T  T  V  V  T  Y  C  R  N  K  K  D  C  D  D  R :   *  I  A  C  V  P  E  F  W  A  A  W  E  G  A  H  N  Y  G  A  C  V  A  D  S  F  H  F  K  *  R  G  I  L  I  Q  C  I  P  T  *  F  K  *  H  A  *  *  A  C  H  K   : G  C  S  N  G  E  C  E  W  A  *  T  C  R  S  R  G  S  L  *  K  K  K  W :   K  R  S  *  S  *  S  E  L  E  C  G  L  G  Q  E  R  E   : G  L  *  S  I  *  R  K  S  W  V  R  P  F  *  *  A  R  D  T  N  Y  A  E  N  M  C  I  I  *  T  T  C  M  G  *  R  A  F  W  N  G   : G  S  I  Y  A  I  *  S  Q  E  H  D  S  G  R  I  T  F  S  E  D  E  I  N  A  *  K  V  E  S  F  S  A  E  *  S  L  L  G  W  I  W  R  R  L  C  R  :  V  S  S  S  R  D  S  N  *  L  H  V  *  Y  C  K  S  A  H  V  F  H  L  R   : D  L  W  *  *  H  G  L  V  K  G  L  L  *  D  V  Q  S  H  *  H  H  Y  F  *   : *  S  S  Q  R  L  V  C  C  I  F  Y  A  V  Q  F  G  W  S  P  D  *  G  T  S  S  K  C  N  W  I  R  F  *  E  V  G  L  Y  R  *  L  S  E  W  L  F  N  G  K  E  K  *  V  R  E  E  N  G  G  A  R  A  G  N  A  G  D  *  D  I  L  *  I  V  L  V  I  I  C  T  S  D  V  Y  V  L  F  K  N  L  K  E  R  P  A  N  C  F  C  Y  V  L  V  I  L  *  W  Y  S  L  L  P  L  R  F  S  *  T  V  L  R  E  L  E  G  E  K  K  G  M  P  K  Y  S  L  A  V  *  F  I  T  *  F  L  F  P  F  D  S  I  *  N  A  R  A  *  K  G  S  C  *  C  *  I  V  N  I  V  W  L  R  V  W  I  D  N  I  D  F  C  H  V   </second_frame>
            <third_frame>   K  T  K  G  I  M  Q  R  R  L  *  L  L  I  A  G  T  R  K  T  A  M  T   : D  K  L  L  V  F  Q  S  F  G  Q  H  G  R  E  L  I  T  T  E  L  A  L  R  I  L  S  I  L  S  E  E  E  F  L  S  S  A  Y  P  L  N  L  N  N  T  L  D  R  L  V  I  K  :  V  V  P  M  E  N  V  N  G  R  K  L  V  E  A  G  D  L  C  E  R  R  N   : G  R  G  V  D  L  N  R  N  W  S  V  D  W  G  K  K  E  K  :  D  Y  D  P  Y  E  E  N  P  G  S  A  P  F  S  E  P  E  T  Q  I  M  R  K  I  C  A  S  F  E  P  H  V  W  V  N  V  H  S  G  M  E  :  A  L  F  M  P  Y  D  H  K  N  T  T  P  E  G  L  P  S  Q  R  M  R  L  M  L  E  K  L  N  R  F  Q  L  N  D  R  C  L  V  G  S  G  G  G  S  V  G :   Y  L  A  H  G  T  A  T  D  Y  M  Y  D  I  A  R  V  P  M  S  F  T  F  E  :  I  Y  G  D  S  T  A  S  S  K  D  C  F  K  M  F  N  P  T  D  I  T  T  F  N  :  R  V  L  N  D  W  S  A  A  F  F  T  L  F  S  L  G  G  V  Q  I  E  E  L  H  P  N  A  T  G  S  G  F  E  K  W  V  S  I  D  D  Y  L  N  G  Y  L  M  E  R  K  S  R  Y  G  K  K  M  E  V  L  E  L  G  M  Q  E  I  R  T  Y  F  R  L  F  L  L  S  S  V  L  L  M  F  M  F  C  S  R  I  S  K  S  G  R  Q  I  V  S  A  M  S  L  *  F  C  D  G  I  L  C  C  P  *  D  L  A  R  Q  F  *  E  S  *  K  V  K  K  R  A  C  Q  N  I  L  *  L  C  N  L  L  P  N  F  F  F  P  L  I  L  Y  R  M  L  E  L  R  K  A  L  V  D  V  E  L  L  T  L  F  G  *  E  C  G  *  I  I  *  I  F  V  M  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25622" stop="25586"/>
                    <exon start="25318" stop="25161"/>
                    <exon start="24459" stop="24390"/>
                    <exon start="24299" stop="24244"/>
                    <exon start="23981" stop="23856"/>
                    <exon start="23343" stop="23204"/>
                    <exon start="22889" stop="22817"/>
                    <exon start="22694" stop="22620"/>
                    <exon start="22355" stop="22044"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIAGTRKTAMTDKLLVFQSFGQHGRELITTELALRILSILSEEEFLSSAYPLNLNNTLDRLVIKVVPMENVNGRKLVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGSAPFSEPETQIMRKICASFEPHVWVNVHSGMEALFMPYDHKNTTPEGLPSQRMRLMLEKLNRFQLNDRCLVGSGGGSVGYLAHGTATDYMYDIARVPMSFTFEIYGDSTASSKDCFKMFNPTDITTFNRVLNDWSAAFFTLFSLGGVQIEELHPNATGSGFEKWVSIDDYLNGYLMERKSRYGKKMEVLELGMQEIRTYFRLFLLSSVLLMFMFCSRISKSGRQIVSAMSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="26835" e_stop="26435"/>
            <exon e_start="25841" e_stop="25784"/>
            <exon e_start="25674" e_stop="25564"/>
            <exon e_start="25298" e_stop="25161"/>
            <exon e_start="24459" e_stop="24390"/>
            <exon e_start="24299" e_stop="24260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.985"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.929" e_score="0.991"/>
          <exon-intron don_prob="0.955" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="26835" e_stop="26435" e_length="401"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26434" i_stop="25842" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25841" e_stop="25784" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="25783" i_stop="25675" i_length="109"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="25674" e_stop="25564" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.929">
            <gDNA_intron_boundary i_start="25563" i_stop="25299" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="25298" e_stop="25161" e_length="138"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25160" i_stop="24460" i_length="701"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="24459" e_stop="24390" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.975">
            <gDNA_intron_boundary i_start="24389" i_stop="24300" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="24299" e_stop="24260" e_length="40"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26835" stop="26435"/>
              <exon start="25841" stop="25784"/>
              <exon start="25674" stop="25564"/>
              <exon start="25298" stop="25161"/>
              <exon start="24459" stop="24390"/>
              <exon start="24299" stop="24260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339499" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAAAGACCAAGCAATCATAGCCGTTGAATCTCTACAAATCAACGACGCCCTGACCACTGTCGTCTTCTTCCCCATCACTGCCGGCATATATCTTTTCTTTCACAATTCCTATGTTTTTAAAGTTTTGGAATTGTCAAAGAAACCAAAAAGATTTGAAATAGTCGAGAAAAAAAAAAGACATTTGGGTTGAATCAAACAACAAAAATCACCGGATGTTGGTGTATTTATCTGTAATTTAAATGGGGTTGCGTCGTCGCCGGCGTTTGTATTCTTTACCCGTTTCGCCATTAGTCTTGTTTGGAGTTGTGTTGATTGTTCTGTGTTCTTCGTTTGTAAATGGAAATTCGAATTCCACGCAAATACCTATTACTCCCATCAATCACGATCTCTATCATACAAG : GGGAGCTTTGTTGGAAGAGATAGAATCATTGGTCCATAGACACCCAAGCAAGCTCTCT : ATGGAGACATTTTCCACTCAAAACAAAGGGTATCATGCAGAGACGACTGTAGTTACTTATTGCCGGAACAAGAAAGACTGCGATGACAGGTCAAAGCTTAAGATCCTTCTT : AGTTTTGGGCAGCATGGGAGGGAGCTCATAACTACGGAGCTTGCGTTGCGGATTCTTTCCATTTTAAGTGAAGAGGAATTCTTATCCAGTGCATACCCACTTAATTTAAATAACACGCTTGATAGGCTTGTCATAAAG : GTTGTTCCAATGGAGAATGTGAATGGGCGTAAACTTGTAGAAGCAGGGGATCTCTGTGAAAGAAGAAATG : GAAGAGGAGTTGATCTTAATCGGAATTGGAGTGTGGATTG</gDNA_template>
            <first_frame> R  K  T  K  Q  S  *  P  L  N  L  Y  K  S  T  T  P  *  P  L  S  S  S  S  P  S  L  P  A  Y  I  F  S  F  T  I  P  M  F  L  K  F  W  N  C  Q  R  N  Q  K  D  L  K  *  S  R  K  K  K  D  I  W  V  E  S  N  N  K  N  H  R  M  L  V  Y  L  S  V  I  *  M  G  L  R  R  R  R  R  L  Y  S  L  P  V  S  P  L  V  L  F  G  V  V  L  I  V  L  C  S  S  F  V  N  G  N  S  N  S  T  Q  I  P  I  T  P  I  N  H  D  L  Y  H  T  R :   G  A  L  L  E  E  I  E  S  L  V  H  R  H  P  S  K  L  S  :  M  E  T  F  S  T  Q  N  K  G  Y  H  A  E  T  T  V  V  T  Y  C  R  N  K  K  D  C  D  D  R  S  K  L  K  I  L  L  :  S  F  G  Q  H  G  R  E  L  I  T  T  E  L  A  L  R  I  L  S  I  L  S  E  E  E  F  L  S  S  A  Y  P  L  N  L  N  N  T  L  D  R  L  V  I  K  :  V  V  P  M  E  N  V  N  G  R  K  L  V  E  A  G  D  L  C  E  R  R  N   : G  R  G  V  D  L  N  R  N  W  S  V  D   </first_frame>
            <second_frame>  E  R  P  S  N  H  S  R  *  I  S  T  N  Q  R  R  P  D  H  C  R  L  L  P  H  H  C  R  H  I  S  F  L  S  Q  F  L  C  F  *  S  F  G  I  V  K  E  T  K  K  I  *  N  S  R  E  K  K  K  T  F  G  L  N  Q  T  T  K  I  T  G  C  W  C  I  Y  L  *  F  K  W  G  C  V  V  A  G  V  C  I  L  Y  P  F  R  H  *  S  C  L  E  L  C  *  L  F  C  V  L  R  L  *  M  E  I  R  I  P  R  K  Y  L  L  L  P  S  I  T  I  S  I  I  Q   : G  E  L  C  W  K  R  *  N  H  W  S  I  D  T  Q  A  S  S  L :   W  R  H  F  P  L  K  T  K  G  I  M  Q  R  R  L  *  L  L  I  A  G  T  R  K  T  A  M  T  G  Q  S  L  R  S  F  L :   V  L  G  S  M  G  G  S  S  *  L  R  S  L  R  C  G  F  F  P  F  *  V  K  R  N  S  Y  P  V  H  T  H  L  I  *  I  T  R  L  I  G  L  S  *  R :   L  F  Q  W  R  M  *  M  G  V  N  L  *  K  Q  G  I  S  V  K  E  E  M  :  E  E  E  L  I  L  I  G  I  G  V  W  I  </second_frame>
            <third_frame>   K  D  Q  A  I  I  A  V  E  S  L  Q  I  N  D  A  L  T  T  V  V  F  F  P  I  T  A  G  I  Y  L  F  F  H  N  S  Y  V  F  K  V  L  E  L  S  K  K  P  K  R  F  E  I  V  E  K  K  K  R  H  L  G  *  I  K  Q  Q  K  S  P  D  V  G  V  F  I  C  N  L  N  G  V  A  S  S  P  A  F  V  F  F  T  R  F  A  I  S  L  V  W  S  C  V  D  C  S  V  F  F  V  C  K  W  K  F  E  F  H  A  N  T  Y  Y  S  H  Q  S  R  S  L  S  Y  K  :  G  S  F  V  G  R  D  R  I  I  G  P  *  T  P  K  Q  A  L   : Y  G  D  I  F  H  S  K  Q  R  V  S  C  R  D  D  C  S  Y  L  L  P  E  Q  E  R  L  R  *  Q  V  K  A  *  D  P  S   : *  F  W  A  A  W  E  G  A  H  N  Y  G  A  C  V  A  D  S  F  H  F  K  *  R  G  I  L  I  Q  C  I  P  T  *  F  K  *  H  A  *  *  A  C  H  K   : G  C  S  N  G  E  C  E  W  A  *  T  C  R  S  R  G  S  L  *  K  K  K  W :   K  R  S  *  S  *  S  E  L  E  C  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26595" stop="26435"/>
                    <exon start="25841" stop="25784"/>
                    <exon start="25674" stop="25564"/>
                    <exon start="25298" stop="25161"/>
                    <exon start="24459" stop="24390"/>
                    <exon start="24299" stop="24262"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>576</number_coding_nucleotides>
                  <number_encoded_amino_acids>192</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGLRRRRRLYSLPVSPLVLFGVVLIVLCSSFVNGNSNSTQIPITPINHDLYHTRGALLEEIESLVHRHPSKLSMETFSTQNKGYHAETTVVTYCRNKKDCDDRSKLKILLSFGQHGRELITTELALRILSILSEEEFLSSAYPLNLNNTLDRLVIKVVPMENVNGRKLVEAGDLCERRNGRGVDLNRNWSVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="31595" PGL_stop="31972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31595" e_stop="31972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.947"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.947">
            <gDNA_exon_boundary e_start="31595" e_stop="31972" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31595" stop="31972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343855" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGTTCACCTGGGACTCCAAAGTGCTTGCTTTGCGTCCACTTTGGATTTATCTCAGCAATCACATCAGTTGCGGAAATTGCTGAACTGAAAAAAAAGAAGAGCTGCAAGACAATTAAAACGGGATTTGGGTTAATCTTGTATCACCGCCGATTTTGGTTACCCCATCATTCTGATAACAAAACGGGACTCCACTTGGCACCATTACATGTAGAAGTATAACTCTTTTAATTGTATGCTCTCTGAATGGTTTTGGTCTGTGTCATATTCAGTATGCTAAGGTTGTCTATATAGCATAGGCATTGGAAACAAAACTTTTTGTGACAATGAACTTAACATGGTCTATTGATTTTGAATGTTTTAGGTGATTTGGTGTTGGAG</gDNA_template>
            <first_frame> R  S  P  G  T  P  K  C  L  L  C  V  H  F  G  F  I  S  A  I  T  S  V  A  E  I  A  E  L  K  K  K  K  S  C  K  T  I  K  T  G  F  G  L  I  L  Y  H  R  R  F  W  L  P  H  H  S  D  N  K  T  G  L  H  L  A  P  L  H  V  E  V  *  L  F  *  L  Y  A  L  *  M  V  L  V  C  V  I  F  S  M  L  R  L  S  I  *  H  R  H  W  K  Q  N  F  L  *  Q  *  T  *  H  G  L  L  I  L  N  V  L  G  D  L  V  L  E </first_frame>
            <second_frame>  V  H  L  G  L  Q  S  A  C  F  A  S  T  L  D  L  S  Q  Q  S  H  Q  L  R  K  L  L  N  *  K  K  R  R  A  A  R  Q  L  K  R  D  L  G  *  S  C  I  T  A  D  F  G  Y  P  I  I  L  I  T  K  R  D  S  T  W  H  H  Y  M  *  K  Y  N  S  F  N  C  M  L  S  E  W  F  W  S  V  S  Y  S  V  C  *  G  C  L  Y  S  I  G  I  G  N  K  T  F  C  D  N  E  L  N  M  V  Y  *  F  *  M  F  *  V  I  W  C  W   </second_frame>
            <third_frame>   F  T  W  D  S  K  V  L  A  L  R  P  L  W  I  Y  L  S  N  H  I  S  C  G  N  C  *  T  E  K  K  E  E  L  Q  D  N  *  N  G  I  W  V  N  L  V  S  P  P  I  L  V  T  P  S  F  *  *  Q  N  G  T  P  L  G  T  I  T  C  R  S  I  T  L  L  I  V  C  S  L  N  G  F  G  L  C  H  I  Q  Y  A  K  V  V  Y  I  A  *  A  L  E  T  K  L  F  V  T  M  N  L  T  W  S  I  D  F  E  C  F  R  *  F  G  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31595" stop="31813"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSPGTPKCLLCVHFGFISAITSVAEIAELKKKKSCKTIKTGFGLILYHRRFWLPHHSDNKTGLHLAPLHVEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="32513" PGL_stop="33176"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32513" e_stop="33176"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32513" e_stop="33176" e_length="664"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32513" stop="33176"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATTTTGATGTTTTAGTGCCACAAGTTCCATTGCTTATGCTGGCTGCTAAAGGGGATGATGATTATCGAGAATTCTACTCTCTTTCCAAGAGGAAAATTTCTCGCAGAATTTTCCTCCCAGAAGCTAGAGGGAAACTCTGTTTACCAACACAGGGATGGCTTTTCACGGTGAACTATAGAGCATTTACAGGAGAGATGACTTTGTTGCACCCTTTCTCACGCGTCCAAATTCAGCTTCCTCCGCCTACTGGCTTGAGAGATGAGGAATCAAAACGTCCCTACGTGACTATCAACCATGTTGTATTATCTGCTAGCCCATCCGTAACAACTGACTATGTTCTGATAATTTGCTATGGACGGCCTACATACCGTTTGGCTCTTTGGCGACCTGGAGACCTCTGTTGGACCAAAATTCCTACTCTCGAAGAAACTTATGCATATTACCATATGATCCAATACTTCAATGGACAACTTTATATCAACAAAGGGCGGTGGCTAGTTTCAGCTATTGACATCCCAGAGCCTAGTAATCCTCAGCCTATTGTAAAACAACGAGAGGTTGTTCAGATGGTGGGTTTATCGAATCACACAAACCAGTCCGCTCACTTTCTCATTGAAGTGTCAGGTGAACTATTATTTGTTCAACAATTGATGATTGTGAA</gDNA_template>
            <first_frame> K  I  L  M  F  *  C  H  K  F  H  C  L  C  W  L  L  K  G  M  M  I  I  E  N  S  T  L  F  P  R  G  K  F  L  A  E  F  S  S  Q  K  L  E  G  N  S  V  Y  Q  H  R  D  G  F  S  R  *  T  I  E  H  L  Q  E  R  *  L  C  C  T  L  S  H  A  S  K  F  S  F  L  R  L  L  A  *  E  M  R  N  Q  N  V  P  T  *  L  S  T  M  L  Y  Y  L  L  A  H  P  *  Q  L  T  M  F  *  *  F  A  M  D  G  L  H  T  V  W  L  F  G  D  L  E  T  S  V  G  P  K  F  L  L  S  K  K  L  M  H  I  T  I  *  S  N  T  S  M  D  N  F  I  S  T  K  G  G  G  *  F  Q  L  L  T  S  Q  S  L  V  I  L  S  L  L  *  N  N  E  R  L  F  R  W  W  V  Y  R  I  T  Q  T  S  P  L  T  F  S  L  K  C  Q  V  N  Y  Y  L  F  N  N  *  *  L  *  </first_frame>
            <second_frame>  K  F  *  C  F  S  A  T  S  S  I  A  Y  A  G  C  *  R  G  *  *  L  S  R  I  L  L  S  F  Q  E  E  N  F  S  Q  N  F  P  P  R  S  *  R  E  T  L  F  T  N  T  G  M  A  F  H  G  E  L  *  S  I  Y  R  R  D  D  F  V  A  P  F  L  T  R  P  N  S  A  S  S  A  Y  W  L  E  R  *  G  I  K  T  S  L  R  D  Y  Q  P  C  C  I  I  C  *  P  I  R  N  N  *  L  C  S  D  N  L  L  W  T  A  Y  I  P  F  G  S  L  A  T  W  R  P  L  L  D  Q  N  S  Y  S  R  R  N  L  C  I  L  P  Y  D  P  I  L  Q  W  T  T  L  Y  Q  Q  R  A  V  A  S  F  S  Y  *  H  P  R  A  *  *  S  S  A  Y  C  K  T  T  R  G  C  S  D  G  G  F  I  E  S  H  K  P  V  R  S  L  S  H  *  S  V  R  *  T  I  I  C  S  T  I  D  D  C  E </second_frame>
            <third_frame>   N  F  D  V  L  V  P  Q  V  P  L  L  M  L  A  A  K  G  D  D  D  Y  R  E  F  Y  S  L  S  K  R  K  I  S  R  R  I  F  L  P  E  A  R  G  K  L  C  L  P  T  Q  G  W  L  F  T  V  N  Y  R  A  F  T  G  E  M  T  L  L  H  P  F  S  R  V  Q  I  Q  L  P  P  P  T  G  L  R  D  E  E  S  K  R  P  Y  V  T  I  N  H  V  V  L  S  A  S  P  S  V  T  T  D  Y  V  L  I  I  C  Y  G  R  P  T  Y  R  L  A  L  W  R  P  G  D  L  C  W  T  K  I  P  T  L  E  E  T  Y  A  Y  Y  H  M  I  Q  Y  F  N  G  Q  L  Y  I  N  K  G  R  W  L  V  S  A  I  D  I  P  E  P  S  N  P  Q  P  I  V  K  Q  R  E  V  V  Q  M  V  G  L  S  N  H  T  N  Q  S  A  H  F  L  I  E  V  S  G  E  L  L  F  V  Q  Q  L  M  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32515" stop="33174"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFDVLVPQVPLLMLAAKGDDDYREFYSLSKRKISRRIFLPEARGKLCLPTQGWLFTVNYRAFTGEMTLLHPFSRVQIQLPPPTGLRDEESKRPYVTINHVVLSASPSVTTDYVLIICYGRPTYRLALWRPGDLCWTKIPTLEETYAYYHMIQYFNGQLYINKGRWLVSAIDIPEPSNPQPIVKQREVVQMVGLSNHTNQSAHFLIEVSGELLFVQQLMIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="33755" PGL_stop="33336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33755" e_stop="33336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="33755" e_stop="33336" e_length="420"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33755" stop="33336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339504" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTAGATTCGTTTATATAAGAAAAAGTTGTGGATAAAGAAATATAAAAAAAATACAGAAACAGTTAATGTCAAATGCAATAGAAGTGAAAACGTCTAATCTATTTCGTAATATTTGGTGTCCAAATCAACTTGTACCACCAAGAATTGATCACATGAGATCAACAAACTGTTTTTTGCATCAAACAACATATAAAAGACACACAAAACCAAAACAATTCAGAGAAAGCTCACAACGCATTTTGATATCAGAATGATGGGGTAACCCAAATCGCCGGGGATACAATATTAAAACCAGAAATGCCTTGATTCAAGGGTTCAATGGTTTCATCTTCGACATTGTAAGCCCCTATCTCTCTTGAATCATCTCCTTCGGTGTACACACGTGTCCAATCATAGGTAAAATATATATGATTAGGT</gDNA_template>
            <first_frame> N  L  D  S  F  I  *  E  K  V  V  D  K  E  I  *  K  K  Y  R  N  S  *  C  Q  M  Q  *  K  *  K  R  L  I  Y  F  V  I  F  G  V  Q  I  N  L  Y  H  Q  E  L  I  T  *  D  Q  Q  T  V  F  C  I  K  Q  H  I  K  D  T  Q  N  Q  N  N  S  E  K  A  H  N  A  F  *  Y  Q  N  D  G  V  T  Q  I  A  G  D  T  I  L  K  P  E  M  P  *  F  K  G  S  M  V  S  S  S  T  L  *  A  P  I  S  L  E  S  S  P  S  V  Y  T  R  V  Q  S  *  V  K  Y  I  *  L  G </first_frame>
            <second_frame>  I  *  I  R  L  Y  K  K  K  L  W  I  K  K  Y  K  K  N  T  E  T  V  N  V  K  C  N  R  S  E  N  V  *  S  I  S  *  Y  L  V  S  K  S  T  C  T  T  K  N  *  S  H  E  I  N  K  L  F  F  A  S  N  N  I  *  K  T  H  K  T  K  T  I  Q  R  K  L  T  T  H  F  D  I  R  M  M  G  *  P  K  S  P  G  I  Q  Y  *  N  Q  K  C  L  D  S  R  V  Q  W  F  H  L  R  H  C  K  P  L  S  L  L  N  H  L  L  R  C  T  H  V  S  N  H  R  *  N  I  Y  D  *   </second_frame>
            <third_frame>   F  R  F  V  Y  I  R  K  S  C  G  *  R  N  I  K  K  I  Q  K  Q  L  M  S  N  A  I  E  V  K  T  S  N  L  F  R  N  I  W  C  P  N  Q  L  V  P  P  R  I  D  H  M  R  S  T  N  C  F  L  H  Q  T  T  Y  K  R  H  T  K  P  K  Q  F  R  E  S  S  Q  R  I  L  I  S  E  *  W  G  N  P  N  R  R  G  Y  N  I  K  T  R  N  A  L  I  Q  G  F  N  G  F  I  F  D  I  V  S  P  Y  L  S  *  I  I  S  F  G  V  H  T  C  P  I  I  G  K  I  Y  M  I  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33717" stop="33499"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNIKKIQKQLMSNAIEVKTSNLFRNIWCPNQLVPPRIDHMRSTNCFLHQTTYKRHTKPKQFRESSQRILISE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="33364" PGL_stop="33754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33364" e_stop="33754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="33364" e_stop="33754" e_length="391"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33364" stop="33754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339505" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGACACGTGTGTACACCGAAGGAGATGATTCAAGAGAGATAGGGGCTTACAATGTCGAAGATGAAACCATTGAACCCTTGAATCAAGGCATTTCTGGTTTTAATATTGTATCCCCGGCGATTTGGGTTACCCCATCATTCTGATATCAAAATGCGTTGTGAGCTTTCTCTGAATTGTTTTGGTTTTGTGTGTCTTTTATATGTTGTTTGATGCAAAAAACAGTTTGTTGATCTCATGTGATCAATTCTTGGTGGTACAAGTTGATTTGGACACCAAATATTACGAAATAGATTAGACGTTTTCACTTCTATTGCATTTGACATTAACTGTTTCTGTATTTTTTTTATATTTCTTTATCCACAACTTTTTCTTATATAAACGAATCTAAAT</gDNA_template>
            <first_frame> W  T  R  V  Y  T  E  G  D  D  S  R  E  I  G  A  Y  N  V  E  D  E  T  I  E  P  L  N  Q  G  I  S  G  F  N  I  V  S  P  A  I  W  V  T  P  S  F  *  Y  Q  N  A  L  *  A  F  S  E  L  F  W  F  C  V  S  F  I  C  C  L  M  Q  K  T  V  C  *  S  H  V  I  N  S  W  W  Y  K  L  I  W  T  P  N  I  T  K  *  I  R  R  F  H  F  Y  C  I  *  H  *  L  F  L  Y  F  F  Y  I  S  L  S  T  T  F  S  Y  I  N  E  S  K  </first_frame>
            <second_frame>  G  H  V  C  T  P  K  E  M  I  Q  E  R  *  G  L  T  M  S  K  M  K  P  L  N  P  *  I  K  A  F  L  V  L  I  L  Y  P  R  R  F  G  L  P  H  H  S  D  I  K  M  R  C  E  L  S  L  N  C  F  G  F  V  C  L  L  Y  V  V  *  C  K  K  Q  F  V  D  L  M  *  S  I  L  G  G  T  S  *  F  G  H  Q  I  L  R  N  R  L  D  V  F  T  S  I  A  F  D  I  N  C  F  C  I  F  F  I  F  L  Y  P  Q  L  F  L  I  *  T  N  L  N </second_frame>
            <third_frame>   D  T  C  V  H  R  R  R  *  F  K  R  D  R  G  L  Q  C  R  R  *  N  H  *  T  L  E  S  R  H  F  W  F  *  Y  C  I  P  G  D  L  G  Y  P  I  I  L  I  S  K  C  V  V  S  F  L  *  I  V  L  V  L  C  V  F  Y  M  L  F  D  A  K  N  S  L  L  I  S  C  D  Q  F  L  V  V  Q  V  D  L  D  T  K  Y  Y  E  I  D  *  T  F  S  L  L  L  H  L  T  L  T  V  S  V  F  F  L  Y  F  F  I  H  N  F  F  L  Y  K  R  I  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0106F07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="34610" PGL_stop="34409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34610" e_stop="34409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34610" e_stop="34409" e_length="202"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34610" stop="34409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343563" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAACTTTCCGGAGATTTGGCTGGCCGGAAAAAGGTACTACCCCTCCCTCTATTTTCCGTTTGGTTAGTTGCTCATCGTCCATGATATTTAGCTATTAATGTGAAAAATGGTTCATTCCGTGTTATTAACCAATATGAATGAATCTATACATCCAGTTGTTCTCTAGCTTTCGATTTAAAATAGTTTGAAAGCTTTCAAGT</gDNA_template>
            <first_frame> *  N  F  P  E  I  W  L  A  G  K  R  Y  Y  P  S  L  Y  F  P  F  G  *  L  L  I  V  H  D  I  *  L  L  M  *  K  M  V  H  S  V  L  L  T  N  M  N  E  S  I  H  P  V  V  L  *  L  S  I  *  N  S  L  K  A  F  K  </first_frame>
            <second_frame>  K  T  F  R  R  F  G  W  P  E  K  G  T  T  P  P  S  I  F  R  L  V  S  C  S  S  S  M  I  F  S  Y  *  C  E  K  W  F  I  P  C  Y  *  P  I  *  M  N  L  Y  I  Q  L  F  S  S  F  R  F  K  I  V  *  K  L  S  S </second_frame>
            <third_frame>   K  L  S  G  D  L  A  G  R  K  K  V  L  P  L  P  L  F  S  V  W  L  V  A  H  R  P  *  Y  L  A  I  N  V  K  N  G  S  F  R  V  I  N  Q  Y  E  *  I  Y  T  S  S  C  S  L  A  F  D  L  K  *  F  E  S  F  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0106F07.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="37320" PGL_stop="39322"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37320" e_stop="37620"/>
            <exon e_start="38496" e_stop="39322"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.938" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37320" e_stop="37620" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.938">
            <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="38496" e_stop="39322" e_length="827"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37320" stop="37620"/>
              <exon start="38496" stop="39322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321175" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGCGCTTCTCCCTACTTTAGGGCCAAATTCAAACTCATCTAAAAAAGGACAAAAATTGACAACAATAAACTATTGCCGTAGAAGAACGCTCAAAGCACTAAGCCAAAAAAAAAACACAATTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG : ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAGAGAAGTCCTTTATTCGAAAGGGGCAAGTTTTATGAAGAGTACTCTGCTAGAAGGAATGAGAGATTGAAGAGGAAGAAGGGTGGTGACACTGTGGATGAGAAGAAACCAGTGTATGATTTGGGAGTTAGAGTTGAATCTTCCAAGAAAAAAGGAGAGCCTAAGATGTTCCAAAGCGCTAGGAAATCAGTTGTTGCTTCTACACCAATAGCAGAGAGGAGAGAAACTTCAAGGTATTTCTTGAGAAGCACAGCTAGTAAGGAGAACAGGAAGCCTCCTTTACCAATCAGCATGGACAAATCTGTGGGGTTATCAGAGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTGTGCATGTATTGATGCAATCTTTACATTGCAGAACCAAGATAAGTCTATTGAACTACTTGCATTGAGA</gDNA_template>
            <first_frame> E  R  F  S  L  L  *  G  Q  I  Q  T  H  L  K  K  D  K  N  *  Q  Q  *  T  I  A  V  E  E  R  S  K  H  *  A  K  K  K  T  Q  F  F  S  P  L  S  *  F  S  A  A  Y  *  I  L  S  S  D  L  V  F  M  S  K  M  M  M  R  S  S  R  K  P  P  L  P  T  R  S  P  V  G  I  R  N  R  R  V  L  Q  S  T  P  N  L  I  R  T  P  P   : D  S  L  K  T  Q  L  P  K  R  V  S  S  S  V  E  E  W  E  L  R  P  E  Y  H  T  I  S  C  E  L  R  A  L  S  K  M  V  Q  N  K  F  G  N  E  D  V  N  A  A  D  N  S  D  S  L  N  A  K  R  S  P  L  F  E  R  G  K  F  Y  E  E  Y  S  A  R  R  N  E  R  L  K  R  K  K  G  G  D  T  V  D  E  K  K  P  V  Y  D  L  G  V  R  V  E  S  S  K  K  K  G  E  P  K  M  F  Q  S  A  R  K  S  V  V  A  S  T  P  I  A  E  R  R  E  T  S  R  Y  F  L  R  S  T  A  S  K  E  N  R  K  P  P  L  P  I  S  M  D  K  S  V  G  L  S  E  R  R  T  T  A  R  R  V  R  K  I  *  V  G  M  I  S  P  L  I  D  V  C  *  T  K  K  *  E  V  V  V  F  G  *  F  G  W  Q  M  *  L  V  M  S  Q  N  F  Q  I  R  V  F  D  V  *  S  T  T  K  R  L  C  S  *  *  L  Q  F  T  F  M  A  D  C  N  M  N  F  L  F  C  I  A  Y  R  *  V  Y  C  A  C  I  D  A  I  F  T  L  Q  N  Q  D  K  S  I  E  L  L  A  L  R </first_frame>
            <second_frame>  S  A  S  P  Y  F  R  A  K  F  K  L  I  *  K  R  T  K  I  D  N  N  K  L  L  P  *  K  N  A  Q  S  T  K  P  K  K  K  H  N  F  F  L  L  F  H  N  F  P  P  L  I  E  S  *  V  L  I  W  F  S  C  P  R  *  *  *  D  L  A  V  N  P  H  F  L  L  D  L  L  L  E  F  G  I  V  V  F  F  N  L  L  Q  T  S  F  E  P  H  Q  :  I  L  *  K  L  S  C  L  R  G  L  A  A  V  L  K  N  G  N  F  V  Q  S  T  I  P  F  L  V  N  *  G  L  C  P  K  W  C  R  T  N  L  V  T  R  M  *  M  L  L  I  T  L  I  H  *  M  Q  R  E  V  L  Y  S  K  G  A  S  F  M  K  S  T  L  L  E  G  M  R  D  *  R  G  R  R  V  V  T  L  W  M  R  R  N  Q  C  M  I  W  E  L  E  L  N  L  P  R  K  K  E  S  L  R  C  S  K  A  L  G  N  Q  L  L  L  L  H  Q  *  Q  R  G  E  K  L  Q  G  I  S  *  E  A  Q  L  V  R  R  T  G  S  L  L  Y  Q  S  A  W  T  N  L  W  G  Y  Q  R  G  E  L  Q  P  E  E  F  G  K  F  E  L  E  *  F  P  P  L  *  T  F  V  E  Q  K  S  K  K  *  *  F  L  D  D  L  D  G  K  C  S  *  L  C  H  K  I  F  R  L  G  C  L  M  F  E  V  Q  R  R  G  Y  V  A  D  S  F  S  S  L  S  W  L  I  V  I  *  I  F  F  F  A  L  L  I  V  K  F  I  V  H  V  L  M  Q  S  L  H  C  R  T  K  I  S  L  L  N  Y  L  H  *   </second_frame>
            <third_frame>   A  L  L  P  T  L  G  P  N  S  N  S  S  K  K  G  Q  K  L  T  T  I  N  Y  C  R  R  R  T  L  K  A  L  S  Q  K  K  N  T  I  F  F  S  S  F  I  I  F  R  R  L  L  N  L  E  F  *  F  G  F  H  V  Q  D  D  D  E  I  *  P  *  T  P  T  S  Y  *  I  S  C  W  N  S  E  S  S  C  S  S  I  Y  S  K  P  H  S  N  P  T  R :   F  F  E  N  S  V  A  *  E  G  *  Q  Q  C  *  R  M  G  T  S  S  R  V  P  Y  H  F  L  *  I  K  G  F  V  Q  N  G  A  E  Q  I  W  *  R  G  C  E  C  C  *  *  L  *  F  I  E  C  K  E  K  S  F  I  R  K  G  Q  V  L  *  R  V  L  C  *  K  E  *  E  I  E  E  E  E  G  W  *  H  C  G  *  E  E  T  S  V  *  F  G  S  *  S  *  I  F  Q  E  K  R  R  A  *  D  V  P  K  R  *  E  I  S  C  C  F  Y  T  N  S  R  E  E  R  N  F  K  V  F  L  E  K  H  S  *  *  G  E  Q  E  A  S  F  T  N  Q  H  G  Q  I  C  G  V  I  R  E  E  N  Y  S  Q  K  S  S  E  N  L  S  W  N  D  F  P  P  Y  R  R  L  L  N  K  K  V  R  S  S  S  F  W  M  I  W  M  A  N  V  V  S  Y  V  T  K  F  S  D  *  G  V  *  C  L  K  Y  N  E  E  A  M  *  L  I  A  S  V  H  F  H  G  *  L  *  Y  E  F  S  F  L  H  C  L  S  L  S  L  L  C  M  Y  *  C  N  L  Y  I  A  E  P  R  *  V  Y  *  T  T  C  I  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37479" stop="37620"/>
                    <exon start="38496" stop="39022"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSDLVFMSKMMMRSSRKPPLPTRSPVGIRNRRVLQSTPNLIRTPPDSLKTQLPKRVSSSVEEWELRPEYHTISCELRALSKMVQNKFGNEDVNAADNSDSLNAKRSPLFERGKFYEEYSARRNERLKRKKGGDTVDEKKPVYDLGVRVESSKKKGEPKMFQSARKSVVASTPIAERRETSRYFLRSTASKENRKPPLPISMDKSVGLSERRTTARRVRKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="37440" e_stop="37620"/>
            <exon e_start="38496" e_stop="38671"/>
            <exon e_start="38985" e_stop="39255"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.938" e_score="0.994"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="37440" e_stop="37620" e_length="181"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.938">
            <gDNA_intron_boundary i_start="37621" i_stop="38495" i_length="875"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38496" e_stop="38671" e_length="176"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38672" i_stop="38984" i_length="313"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38985" e_stop="39255" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37440" stop="37620"/>
              <exon start="38496" stop="38671"/>
              <exon start="38985" stop="39255"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTCTCCTCTTTCATAATTTTCCGCCGCTTATTGAATCTTGAGTTCTGATTTGGTTTTCATGTCCAAGATGATGATGAGATCTAGCCGTAAACCCCCACTTCCTACTAGATCTCCTGTTGGAATTCGGAATCGTCGTGTTCTTCAATCTACTCCAAACCTCATTCGAACCCCACCAG : ATTCTTTGAAAACTCAGTTGCCTAAGAGGGTTAGCAGCAGTGTTGAAGAATGGGAACTTCGTCCAGAGTACCATACCATTTCTTGTGAATTAAGGGCTTTGTCCAAAATGGTGCAGAACAAATTTGGTAACGAGGATGTGAATGCTGCTGATAACTCTGATTCATTGAATGCAAAG : AGAGGAGAACTACAGCCAGAAGAGTTCGGAAAATTTGAGTTGGAATGATTTCCCCCCTTATAGACGTTTGTTGAACAAAAAAGTAAGAAGTAGTAGTTTTTGGATGATTTGGATGGCAAATGTAGTTAGTTATGTCACAAAATTTTCAGATTAGGGTGTTTGATGTTTGAAGTACAACGAAGAGGCTATGTAGCTGATAGCTTCAGTTCACTTTCATGGCTGATTGTAATATGAATTTTCTTTTTTGCATTGCTTATCGTTAAGTTTATTG</gDNA_template>
            <first_frame> F  F  S  P  L  S  *  F  S  A  A  Y  *  I  L  S  S  D  L  V  F  M  S  K  M  M  M  R  S  S  R  K  P  P  L  P  T  R  S  P  V  G  I  R  N  R  R  V  L  Q  S  T  P  N  L  I  R  T  P  P   : D  S  L  K  T  Q  L  P  K  R  V  S  S  S  V  E  E  W  E  L  R  P  E  Y  H  T  I  S  C  E  L  R  A  L  S  K  M  V  Q  N  K  F  G  N  E  D  V  N  A  A  D  N  S  D  S  L  N  A  K  :  R  G  E  L  Q  P  E  E  F  G  K  F  E  L  E  *  F  P  P  L  *  T  F  V  E  Q  K  S  K  K  *  *  F  L  D  D  L  D  G  K  C  S  *  L  C  H  K  I  F  R  L  G  C  L  M  F  E  V  Q  R  R  G  Y  V  A  D  S  F  S  S  L  S  W  L  I  V  I  *  I  F  F  F  A  L  L  I  V  K  F  I  </first_frame>
            <second_frame>  F  F  L  L  F  H  N  F  P  P  L  I  E  S  *  V  L  I  W  F  S  C  P  R  *  *  *  D  L  A  V  N  P  H  F  L  L  D  L  L  L  E  F  G  I  V  V  F  F  N  L  L  Q  T  S  F  E  P  H  Q  :  I  L  *  K  L  S  C  L  R  G  L  A  A  V  L  K  N  G  N  F  V  Q  S  T  I  P  F  L  V  N  *  G  L  C  P  K  W  C  R  T  N  L  V  T  R  M  *  M  L  L  I  T  L  I  H  *  M  Q  R :   E  E  N  Y  S  Q  K  S  S  E  N  L  S  W  N  D  F  P  P  Y  R  R  L  L  N  K  K  V  R  S  S  S  F  W  M  I  W  M  A  N  V  V  S  Y  V  T  K  F  S  D  *  G  V  *  C  L  K  Y  N  E  E  A  M  *  L  I  A  S  V  H  F  H  G  *  L  *  Y  E  F  S  F  L  H  C  L  S  L  S  L  L </second_frame>
            <third_frame>   F  F  S  S  F  I  I  F  R  R  L  L  N  L  E  F  *  F  G  F  H  V  Q  D  D  D  E  I  *  P  *  T  P  T  S  Y  *  I  S  C  W  N  S  E  S  S  C  S  S  I  Y  S  K  P  H  S  N  P  T  R :   F  F  E  N  S  V  A  *  E  G  *  Q  Q  C  *  R  M  G  T  S  S  R  V  P  Y  H  F  L  *  I  K  G  F  V  Q  N  G  A  E  Q  I  W  *  R  G  C  E  C  C  *  *  L  *  F  I  E  C  K   : E  R  R  T  T  A  R  R  V  R  K  I  *  V  G  M  I  S  P  L  I  D  V  C  *  T  K  K  *  E  V  V  V  F  G  *  F  G  W  Q  M  *  L  V  M  S  Q  N  F  Q  I  R  V  F  D  V  *  S  T  T  K  R  L  C  S  *  *  L  Q  F  T  F  M  A  D  C  N  M  N  F  L  F  C  I  A  Y  R  *  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37479" stop="37620"/>
                    <exon start="38496" stop="38671"/>
                    <exon start="38985" stop="39032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>363</number_coding_nucleotides>
                  <number_encoded_amino_acids>121</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILSSDLVFMSKMMMRSSRKPPLPTRSPVGIRNRRVLQSTPNLIRTPPDSLKTQLPKRVSSSVEEWELRPEYHTISCELRALSKMVQNKFGNEDVNAADNSDSLNAKRGELQPEEFGKFELE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="43684" PGL_stop="39579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43684" e_stop="43578"/>
            <exon e_start="42221" e_stop="42122"/>
            <exon e_start="42023" e_stop="41990"/>
            <exon e_start="41901" e_stop="41825"/>
            <exon e_start="41281" e_stop="41256"/>
            <exon e_start="41178" e_stop="41014"/>
            <exon e_start="40581" e_stop="40467"/>
            <exon e_start="39983" e_stop="39579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.418" acc_prob="0.831" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.903" acc_prob="0.679" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.541" acc_prob="0.956" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43684" e_stop="43578" e_length="107"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="43577" i_stop="42222" i_length="1356"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42221" e_stop="42122" e_length="100"/>
          </exon>
          <intron i_serial="2" don_prob="0.418" acc_prob="0.831">
            <gDNA_intron_boundary i_start="42121" i_stop="42024" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42023" e_stop="41990" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.909" acc_prob="0.840">
            <gDNA_intron_boundary i_start="41989" i_stop="41902" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="41901" e_stop="41825" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.903" acc_prob="0.679">
            <gDNA_intron_boundary i_start="41824" i_stop="41282" i_length="543"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="41281" e_stop="41256" e_length="26"/>
          </exon>
          <intron i_serial="5" don_prob="0.773" acc_prob="0.969">
            <gDNA_intron_boundary i_start="41255" i_stop="41179" i_length="77"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="41178" e_stop="41014" e_length="165"/>
          </exon>
          <intron i_serial="6" don_prob="0.933" acc_prob="0.996">
            <gDNA_intron_boundary i_start="41013" i_stop="40582" i_length="432"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="40581" e_stop="40467" e_length="115"/>
          </exon>
          <intron i_serial="7" don_prob="0.541" acc_prob="0.956">
            <gDNA_intron_boundary i_start="40466" i_stop="39984" i_length="483"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39983" e_stop="39579" e_length="405"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43684" stop="43578"/>
              <exon start="42221" stop="42122"/>
              <exon start="42023" stop="41990"/>
              <exon start="41901" stop="41825"/>
              <exon start="41281" stop="41256"/>
              <exon start="41178" stop="41014"/>
              <exon start="40581" stop="40467"/>
              <exon start="39983" stop="39579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGATCAACAAAATGGGGGAGAAGAACAAGTACAGTATAATTATACCTACCTACAATGAACGTCTCAATATTGCTCTCATCATCTACCTCGTCTTCAAGCATCTCAC : GGATGTTGATTTTGAAATAATAGTAGTGGATGATGGAAGTCCAGATGGCACACAGGATATTGTCAAACAATTGCAGAAAGTATATGGAGAAGATCGTATT : TTATTAAGACCTCGACCTCGGAAACTTGGTCTAG : GCACTGCGTATATTCATGGTTTGAAGCATGCCTCAGGCAATTTTGTTGTTATTATGGATGCGGATCTTTCTCACCAT : CCAAAATACCTGCCAAGATTTATCAA : GAAACAAATGGAGACAGGTGCCAATATAGTTACTGGAACTCGATATGTTTCTAGTGGTGGTGTCCACGGATGGAACCTTATGCGCAAATTGACGAGCAGGGGAGCCAATGTCCTTGCACAGACACTACTTTGGCCGGGTGTATCAGACTTAACTGGATCCTTCCG : GCTGTACCAGAAGTCTGCACTAGAAGACATCATAAGCTCTTGTGTCAGTAAAGGATATGTTTTTCAGATGGAGATGATTGTTAGGGCTTCAAGAAAAGGTTACCGCATTGAAGAG : GTTCCAATTACTTTCGTTGATAGAGTATTTGGAAGTTCTAAGCTTGGAGGATCTGAAATAGTGGAGTATCTAAAGGGCCTTCTGTATCTTCTGGTTACAACTTGATATGTTTAACAAGCTGCATGACCAGAGAATCTGAAGACTTGAGTTGTTTTGCAACCTGTGACATTCTGAAGACTTGAACTAGGACCATATAACAAATTCTTTTTCTTTTTGCTTCAGCTGATGTAACCAAAACTTTGATGAATGAGCTATTATGTATTGGAAAGAGTGTTGCTGAAGTAATTTCCAATGCTACTTTGGTTTATTTTGTGGATGATGCTTTCCATTTTTGGATAATACACTTGTTCAAGTTATCTGTGAATATTAACTTGCATTTTCCAGCTTATATAAATGTCTACTTCT</gDNA_template>
            <first_frame> E  I  N  K  M  G  E  K  N  K  Y  S  I  I  I  P  T  Y  N  E  R  L  N  I  A  L  I  I  Y  L  V  F  K  H  L  T :   D  V  D  F  E  I  I  V  V  D  D  G  S  P  D  G  T  Q  D  I  V  K  Q  L  Q  K  V  Y  G  E  D  R  I  :  L  L  R  P  R  P  R  K  L  G  L   : G  T  A  Y  I  H  G  L  K  H  A  S  G  N  F  V  V  I  M  D  A  D  L  S  H  H  :  P  K  Y  L  P  R  F  I  K :   K  Q  M  E  T  G  A  N  I  V  T  G  T  R  Y  V  S  S  G  G  V  H  G  W  N  L  M  R  K  L  T  S  R  G  A  N  V  L  A  Q  T  L  L  W  P  G  V  S  D  L  T  G  S  F  R :   L  Y  Q  K  S  A  L  E  D  I  I  S  S  C  V  S  K  G  Y  V  F  Q  M  E  M  I  V  R  A  S  R  K  G  Y  R  I  E  E  :  V  P  I  T  F  V  D  R  V  F  G  S  S  K  L  G  G  S  E  I  V  E  Y  L  K  G  L  L  Y  L  L  V  T  T  *  Y  V  *  Q  A  A  *  P  E  N  L  K  T  *  V  V  L  Q  P  V  T  F  *  R  L  E  L  G  P  Y  N  K  F  F  F  F  L  L  Q  L  M  *  P  K  L  *  *  M  S  Y  Y  V  L  E  R  V  L  L  K  *  F  P  M  L  L  W  F  I  L  W  M  M  L  S  I  F  G  *  Y  T  C  S  S  Y  L  *  I  L  T  C  I  F  Q  L  I  *  M  S  T  S </first_frame>
            <second_frame>  R  S  T  K  W  G  R  R  T  S  T  V  *  L  Y  L  P  T  M  N  V  S  I  L  L  S  S  S  T  S  S  S  S  I  S   : R  M  L  I  L  K  *  *  *  W  M  M  E  V  Q  M  A  H  R  I  L  S  N  N  C  R  K  Y  M  E  K  I  V  F :   Y  *  D  L  D  L  G  N  L  V  *  :  A  L  R  I  F  M  V  *  S  M  P  Q  A  I  L  L  L  L  W  M  R  I  F  L  T  I :   Q  N  T  C  Q  D  L  S   : R  N  K  W  R  Q  V  P  I  *  L  L  E  L  D  M  F  L  V  V  V  S  T  D  G  T  L  C  A  N  *  R  A  G  E  P  M  S  L  H  R  H  Y  F  G  R  V  Y  Q  T  *  L  D  P  S   : G  C  T  R  S  L  H  *  K  T  S  *  A  L  V  S  V  K  D  M  F  F  R  W  R  *  L  L  G  L  Q  E  K  V  T  A  L  K  R :   F  Q  L  L  S  L  I  E  Y  L  E  V  L  S  L  E  D  L  K  *  W  S  I  *  R  A  F  C  I  F  W  L  Q  L  D  M  F  N  K  L  H  D  Q  R  I  *  R  L  E  L  F  C  N  L  *  H  S  E  D  L  N  *  D  H  I  T  N  S  F  S  F  C  F  S  *  C  N  Q  N  F  D  E  *  A  I  M  Y  W  K  E  C  C  *  S  N  F  Q  C  Y  F  G  L  F  C  G  *  C  F  P  F  L  D  N  T  L  V  Q  V  I  C  E  Y  *  L  A  F  S  S  L  Y  K  C  L  L   </second_frame>
            <third_frame>   D  Q  Q  N  G  G  E  E  Q  V  Q  Y  N  Y  T  Y  L  Q  *  T  S  Q  Y  C  S  H  H  L  P  R  L  Q  A  S  H  :  G  C  *  F  *  N  N  S  S  G  *  W  K  S  R  W  H  T  G  Y  C  Q  T  I  A  E  S  I  W  R  R  S  Y   : F  I  K  T  S  T  S  E  T  W  S  R :   H  C  V  Y  S  W  F  E  A  C  L  R  Q  F  C  C  Y  Y  G  C  G  S  F  S  P   : S  K  I  P  A  K  I  Y  Q  :  E  T  N  G  D  R  C  Q  Y  S  Y  W  N  S  I  C  F  *  W  W  C  P  R  M  E  P  Y  A  Q  I  D  E  Q  G  S  Q  C  P  C  T  D  T  T  L  A  G  C  I  R  L  N  W  I  L  P  :  A  V  P  E  V  C  T  R  R  H  H  K  L  L  C  Q  *  R  I  C  F  S  D  G  D  D  C  *  G  F  K  K  R  L  P  H  *  R   : G  S  N  Y  F  R  *  *  S  I  W  K  F  *  A  W  R  I  *  N  S  G  V  S  K  G  P  S  V  S  S  G  Y  N  L  I  C  L  T  S  C  M  T  R  E  S  E  D  L  S  C  F  A  T  C  D  I  L  K  T  *  T  R  T  I  *  Q  I  L  F  L  F  A  S  A  D  V  T  K  T  L  M  N  E  L  L  C  I  G  K  S  V  A  E  V  I  S  N  A  T  L  V  Y  F  V  D  D  A  F  H  F  W  I  I  H  L  F  K  L  S  V  N  I  N  L  H  F  P  A  Y  I  N  V  Y  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43684" stop="43578"/>
                    <exon start="42221" stop="42122"/>
                    <exon start="42023" stop="41990"/>
                    <exon start="41901" stop="41825"/>
                    <exon start="41281" stop="41256"/>
                    <exon start="41178" stop="41014"/>
                    <exon start="40581" stop="40467"/>
                    <exon start="39983" stop="39879"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EINKMGEKNKYSIIIPTYNERLNIALIIYLVFKHLTDVDFEIIVVDDGSPDGTQDIVKQLQKVYGEDRILLRPRPRKLGLGTAYIHGLKHASGNFVVIMDADLSHHPKYLPRFIKKQMETGANIVTGTRYVSSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYQKSALEDIISSCVSKGYVFQMEMIVRASRKGYRIEEVPITFVDRVFGSSKLGGSEIVEYLKGLLYLLVTT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39786" stop="39580"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QILFLFASADVTKTLMNELLCIGKSVAEVISNATLVYFVDDAFHFWIIHLFKLSVNINLHFPAYINVYF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="57261" PGL_stop="53552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57261" e_stop="57048"/>
            <exon e_start="56837" e_stop="56812"/>
            <exon e_start="56704" e_stop="56543"/>
            <exon e_start="56220" e_stop="56008"/>
            <exon e_start="55903" e_stop="55856"/>
            <exon e_start="55741" e_stop="55683"/>
            <exon e_start="55458" e_stop="55332"/>
            <exon e_start="55207" e_stop="55133"/>
            <exon e_start="54961" e_stop="54881"/>
            <exon e_start="54451" e_stop="54383"/>
            <exon e_start="54201" e_stop="53552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.525" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.684" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57261" e_stop="57048" e_length="214"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="57047" i_stop="56838" i_length="210"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="56837" e_stop="56812" e_length="26"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.989">
            <gDNA_intron_boundary i_start="56811" i_stop="56705" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56704" e_stop="56543" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.915">
            <gDNA_intron_boundary i_start="56542" i_stop="56221" i_length="322"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56220" e_stop="56008" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.970">
            <gDNA_intron_boundary i_start="56007" i_stop="55904" i_length="104"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55903" e_stop="55856" e_length="48"/>
          </exon>
          <intron i_serial="5" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="55855" i_stop="55742" i_length="114"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55741" e_stop="55683" e_length="59"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.525">
            <gDNA_intron_boundary i_start="55682" i_stop="55459" i_length="224"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55458" e_stop="55332" e_length="127"/>
          </exon>
          <intron i_serial="7" don_prob="0.932" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55331" i_stop="55208" i_length="124"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="55207" e_stop="55133" e_length="75"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55132" i_stop="54962" i_length="171"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="54961" e_stop="54881" e_length="81"/>
          </exon>
          <intron i_serial="9" don_prob="0.975" acc_prob="0.684">
            <gDNA_intron_boundary i_start="54880" i_stop="54452" i_length="429"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="54451" e_stop="54383" e_length="69"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="54382" i_stop="54202" i_length="181"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="54201" e_stop="53552" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57261" stop="57048"/>
              <exon start="56837" stop="56812"/>
              <exon start="56704" stop="56543"/>
              <exon start="56220" stop="56008"/>
              <exon start="55903" stop="55856"/>
              <exon start="55741" stop="55683"/>
              <exon start="55458" stop="55332"/>
              <exon start="55207" stop="55133"/>
              <exon start="54961" stop="54881"/>
              <exon start="54451" stop="54383"/>
              <exon start="54201" stop="53552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGGGAGAGTGTTTCTTCAGTGGTCTGCTTAAAAGATGTTCCTCTTGAGGCATTCAAGATTATGCTAGAATTCATGTACAGTGGAGAACTTAATAAAGAAGCTACTGCAGGAATCAATACCTTGTTACTTCAGCTACTTTTACTAGCCGATGAGTTTGGGGTGACACTTCTTCATCAGGAGTGCTGCAAAATACTTCTGGAGTGCCTCTCAGAG : GGATGGAGTTCTCCTATTGGAAGAAG : GATTCAGTATGCCCAATTCTTCAAGTGATATCATCGATTCCCTCATGTAAGCTCATTGAAGAAACCTGTGAGAGGATATTCTCCATGCACTTCGATTATTGTACAACTGCAAGCATTGACTTTGTCATGTTAGATGAATCAAGTTTTAGCAATATCCTTCAG : CATACAGATTTAACAGTGACATCTGAAGAGAGAGTTCTCAATGCCATCTTGCTTTGGTGCTTACAAGCAAGAGAACTGTATGGATGGGAAGCAGTAAACGAATTGATGGTAAATTCAACACCTGAGATGCTTTTTGGAGAGAGACTTGAGTCTCTAAATGAATTTCTGCATCTTGTGCGGTTCCCTTTACTTTCACCTGATTTGCTGAATAAG : TTTGAACAGAGTAGCCTTAGCCAGCAAATTCCCACTTTTGACCATCTG : GTTAAAGAGGCATTAAGATTTCTGGAATTTGAGATCACCGATTTTCAAGGCAACCAGAG : ATTTCAGCATAGAAAATCAAGTTTTAAGGAGCTGCTCTACATATGCGATGGAGATAGCAACGGGGTCCTTTATTTTGCTGGCACATCATATGGGAAACACCAGTGGGTAAATCCTGTTTTGTCCAAG : AGAGTAATTATCACGGCTAGTAGCCCCATTTCAAGATGCACTGATCCCAAGGTGTTGGTGTCAAGGAACTTCCAG : GGTACATCTGTTGCTGGACCTCAGATGGAGGGGGGAAGAAACACTTCGTGGTGGATGGTTGATATTGGTCCGGATCACCAG : CTCATGTGTAACTACTACACATTGAGACAGGATGGATCAAGAGCATTTATCAGACGTTGGAACCTTCAG : GGCTCTTTGGATGGGAAAAGCTGGACAAATCTGAGAGTACATGAGAATGATCAAACTATTTGCAAGCCAGGTCAATTTGCATCATGGCCAGTTACTGGTTCAAATGCATTACTTCCTTTCAGATTCTTTCGAGTTCTCATGACCGGTCCTACTACAGACGATACTAACCCCTGGAACTGTTGCATCTGCTTCTTAGAACTCTATGGCTATTTTCGTTAGCTCGGTGTTGGTTTGAACATTAGTTTTATTTTTCTTCATGAAACCCTTCATTTACAGTCAAAATGTTGTATGGTTTTCGTATTTCTCAATGATGTTTACAGTGTAGTGTTGTCATCTCTACTCTTGCCTGTTACATATTTTTGAGTTTATGATCATGTTTAATATCAGAATATGAATTCAACATCTATTATATACATAAAAATAGCTAGTACATTTCGTGTGCATGATCATCTACGTCATTGGCATTTTGCAGAGATTAGGGTATGGTATATCTGACATTAATTTTAGTAATTTTTGTTACGTATACATAGTAAATATTGAATTAATCACATGAAAGGTGGAAATTATATTTTGACTTTGGCACCAGCAAAAGCATTGGTGCAGTTGACCTGTAGTTCACTTTAATAATAAAATGGTAATTAACGGTCAAT</gDNA_template>
            <first_frame> E  G  E  C  F  F  S  G  L  L  K  R  C  S  S  *  G  I  Q  D  Y  A  R  I  H  V  Q  W  R  T  *  *  R  S  Y  C  R  N  Q  Y  L  V  T  S  A  T  F  T  S  R  *  V  W  G  D  T  S  S  S  G  V  L  Q  N  T  S  G  V  P  L  R   : G  M  E  F  S  Y  W  K  K  :  D  S  V  C  P  I  L  Q  V  I  S  S  I  P  S  C  K  L  I  E  E  T  C  E  R  I  F  S  M  H  F  D  Y  C  T  T  A  S  I  D  F  V  M  L  D  E  S  S  F  S  N  I  L  Q  :  H  T  D  L  T  V  T  S  E  E  R  V  L  N  A  I  L  L  W  C  L  Q  A  R  E  L  Y  G  W  E  A  V  N  E  L  M  V  N  S  T  P  E  M  L  F  G  E  R  L  E  S  L  N  E  F  L  H  L  V  R  F  P  L  L  S  P  D  L  L  N  K  :  F  E  Q  S  S  L  S  Q  Q  I  P  T  F  D  H  L  :  V  K  E  A  L  R  F  L  E  F  E  I  T  D  F  Q  G  N  Q  R :   F  Q  H  R  K  S  S  F  K  E  L  L  Y  I  C  D  G  D  S  N  G  V  L  Y  F  A  G  T  S  Y  G  K  H  Q  W  V  N  P  V  L  S  K  :  R  V  I  I  T  A  S  S  P  I  S  R  C  T  D  P  K  V  L  V  S  R  N  F  Q  :  G  T  S  V  A  G  P  Q  M  E  G  G  R  N  T  S  W  W  M  V  D  I  G  P  D  H  Q  :  L  M  C  N  Y  Y  T  L  R  Q  D  G  S  R  A  F  I  R  R  W  N  L  Q  :  G  S  L  D  G  K  S  W  T  N  L  R  V  H  E  N  D  Q  T  I  C  K  P  G  Q  F  A  S  W  P  V  T  G  S  N  A  L  L  P  F  R  F  F  R  V  L  M  T  G  P  T  T  D  D  T  N  P  W  N  C  C  I  C  F  L  E  L  Y  G  Y  F  R  *  L  G  V  G  L  N  I  S  F  I  F  L  H  E  T  L  H  L  Q  S  K  C  C  M  V  F  V  F  L  N  D  V  Y  S  V  V  L  S  S  L  L  L  P  V  T  Y  F  *  V  Y  D  H  V  *  Y  Q  N  M  N  S  T  S  I  I  Y  I  K  I  A  S  T  F  R  V  H  D  H  L  R  H  W  H  F  A  E  I  R  V  W  Y  I  *  H  *  F  *  *  F  L  L  R  I  H  S  K  Y  *  I  N  H  M  K  G  G  N  Y  I  L  T  L  A  P  A  K  A  L  V  Q  L  T  C  S  S  L  *  *  *  N  G  N  *  R  S   </first_frame>
            <second_frame>  R  E  S  V  S  S  V  V  C  L  K  D  V  P  L  E  A  F  K  I  M  L  E  F  M  Y  S  G  E  L  N  K  E  A  T  A  G  I  N  T  L  L  L  Q  L  L  L  L  A  D  E  F  G  V  T  L  L  H  Q  E  C  C  K  I  L  L  E  C  L  S  E  :  G  W  S  S  P  I  G  R  R :   I  Q  Y  A  Q  F  F  K  *  Y  H  R  F  P  H  V  S  S  L  K  K  P  V  R  G  Y  S  P  C  T  S  I  I  V  Q  L  Q  A  L  T  L  S  C  *  M  N  Q  V  L  A  I  S  F  S :   I  Q  I  *  Q  *  H  L  K  R  E  F  S  M  P  S  C  F  G  A  Y  K  Q  E  N  C  M  D  G  K  Q  *  T  N  *  W  *  I  Q  H  L  R  C  F  L  E  R  D  L  S  L  *  M  N  F  C  I  L  C  G  S  L  Y  F  H  L  I  C  *  I  S :   L  N  R  V  A  L  A  S  K  F  P  L  L  T  I  W :   L  K  R  H  *  D  F  W  N  L  R  S  P  I  F  K  A  T  R   : D  F  S  I  E  N  Q  V  L  R  S  C  S  T  Y  A  M  E  I  A  T  G  S  F  I  L  L  A  H  H  M  G  N  T  S  G  *  I  L  F  C  P  R :   E  *  L  S  R  L  V  A  P  F  Q  D  A  L  I  P  R  C  W  C  Q  G  T  S  R :   V  H  L  L  L  D  L  R  W  R  G  E  E  T  L  R  G  G  W  L  I  L  V  R  I  T  S :   S  C  V  T  T  T  H  *  D  R  M  D  Q  E  H  L  S  D  V  G  T  F  R :   A  L  W  M  G  K  A  G  Q  I  *  E  Y  M  R  M  I  K  L  F  A  S  Q  V  N  L  H  H  G  Q  L  L  V  Q  M  H  Y  F  L  S  D  S  F  E  F  S  *  P  V  L  L  Q  T  I  L  T  P  G  T  V  A  S  A  S  *  N  S  M  A  I  F  V  S  S  V  L  V  *  T  L  V  L  F  F  F  M  K  P  F  I  Y  S  Q  N  V  V  W  F  S  Y  F  S  M  M  F  T  V  *  C  C  H  L  Y  S  C  L  L  H  I  F  E  F  M  I  M  F  N  I  R  I  *  I  Q  H  L  L  Y  T  *  K  *  L  V  H  F  V  C  M  I  I  Y  V  I  G  I  L  Q  R  L  G  Y  G  I  S  D  I  N  F  S  N  F  C  Y  V  Y  I  V  N  I  E  L  I  T  *  K  V  E  I  I  F  *  L  W  H  Q  Q  K  H  W  C  S  *  P  V  V  H  F  N  N  K  M  V  I  N  G  Q  </second_frame>
            <third_frame>   G  R  V  F  L  Q  W  S  A  *  K  M  F  L  L  R  H  S  R  L  C  *  N  S  C  T  V  E  N  L  I  K  K  L  L  Q  E  S  I  P  C  Y  F  S  Y  F  Y  *  P  M  S  L  G  *  H  F  F  I  R  S  A  A  K  Y  F  W  S  A  S  Q  R :   D  G  V  L  L  L  E  E   : G  F  S  M  P  N  S  S  S  D  I  I  D  S  L  M  *  A  H  *  R  N  L  *  E  D  I  L  H  A  L  R  L  L  Y  N  C  K  H  *  L  C  H  V  R  *  I  K  F  *  Q  Y  P  S   : A  Y  R  F  N  S  D  I  *  R  E  S  S  Q  C  H  L  A  L  V  L  T  S  K  R  T  V  W  M  G  S  S  K  R  I  D  G  K  F  N  T  *  D  A  F  W  R  E  T  *  V  S  K  *  I  S  A  S  C  A  V  P  F  T  F  T  *  F  A  E  *   : V  *  T  E  *  P  *  P  A  N  S  H  F  *  P  S   : G  *  R  G  I  K  I  S  G  I  *  D  H  R  F  S  R  Q  P  E  :  I  S  A  *  K  I  K  F  *  G  A  A  L  H  M  R  W  R  *  Q  R  G  P  L  F  C  W  H  I  I  W  E  T  P  V  G  K  S  C  F  V  Q   : E  S  N  Y  H  G  *  *  P  H  F  K  M  H  *  S  Q  G  V  G  V  K  E  L  P   : G  Y  I  C  C  W  T  S  D  G  G  G  K  K  H  F  V  V  D  G  *  Y  W  S  G  S  P   : A  H  V  *  L  L  H  I  E  T  G  W  I  K  S  I  Y  Q  T  L  E  P  S   : G  L  F  G  W  E  K  L  D  K  S  E  S  T  *  E  *  S  N  Y  L  Q  A  R  S  I  C  I  M  A  S  Y  W  F  K  C  I  T  S  F  Q  I  L  S  S  S  H  D  R  S  Y  Y  R  R  Y  *  P  L  E  L  L  H  L  L  L  R  T  L  W  L  F  S  L  A  R  C  W  F  E  H  *  F  Y  F  S  S  *  N  P  S  F  T  V  K  M  L  Y  G  F  R  I  S  Q  *  C  L  Q  C  S  V  V  I  S  T  L  A  C  Y  I  F  L  S  L  *  S  C  L  I  S  E  Y  E  F  N  I  Y  Y  I  H  K  N  S  *  Y  I  S  C  A  *  S  S  T  S  L  A  F  C  R  D  *  G  M  V  Y  L  T  L  I  L  V  I  F  V  T  Y  T  *  *  I  L  N  *  S  H  E  R  W  K  L  Y  F  D  F  G  T  S  K  S  I  G  A  V  D  L  *  F  T  L  I  I  K  W  *  L  T  V  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57108" stop="57048"/>
                    <exon start="56837" stop="56812"/>
                    <exon start="56704" stop="56543"/>
                    <exon start="56220" stop="56008"/>
                    <exon start="55903" stop="55856"/>
                    <exon start="55741" stop="55683"/>
                    <exon start="55458" stop="55332"/>
                    <exon start="55207" stop="55133"/>
                    <exon start="54961" stop="54881"/>
                    <exon start="54451" stop="54383"/>
                    <exon start="54201" stop="53983"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1137</number_coding_nucleotides>
                  <number_encoded_amino_acids>379</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWGDTSSSGVLQNTSGVPLRGMEFSYWKKDSVCPILQVISSIPSCKLIEETCERIFSMHFDYCTTASIDFVMLDESSFSNILQHTDLTVTSEERVLNAILLWCLQARELYGWEAVNELMVNSTPEMLFGERLESLNEFLHLVRFPLLSPDLLNKFEQSSLSQQIPTFDHLVKEALRFLEFEITDFQGNQRFQHRKSSFKELLYICDGDSNGVLYFAGTSYGKHQWVNPVLSKRVIITASSPISRCTDPKVLVSRNFQGTSVAGPQMEGGRNTSWWMVDIGPDHQLMCNYYTLRQDGSRAFIRRWNLQGSLDGKSWTNLRVHENDQTICKPGQFASWPVTGSNALLPFRFFRVLMTGPTTDDTNPWNCCICFLELYGYFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="58724" PGL_stop="58037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58724" e_stop="58037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58724" e_stop="58037" e_length="688"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58724" stop="58037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTCACCTGCCAGACATAAGTTATTCTGTTCTTCATGCACTTCTTCAGTACATCTACACTGGACATACTCAGGTGAGTCCCATCTTTCAGGCAATTTCAAATTATTATGCTTCCACTAATTGTCTGCTTAACTTTGGATAACATGCCTATTGCTTTTTCATTGTTGAGTTTCAGGAACTAAGAACAGAAAAAATAGTTCTTTTTACTATTCAGAGAAGGAATTAAATCAAAATTTTAAAATTTGCTCTATGTGAGTTTTGTGTATAAACCAAATTTTCTTTATTTTTGTATTTCTTCCTATTGTCTAATTTTTCTAAAGACTACTGACTCCAGCCAAATCTTAAATCAAACGTACCAAGCGTGACATTATGCGTATAGATATAAATTTGCAAGGTATTGTTCTATGCGACTTTTAGTTTACTTGAATATTTATCTCATAGCTGCTGATTCACTGCTACATTTGAACATTGTAGATTTTGGAGTCTGATCTCTGCTCATTGAAGTCTTTGAGCTTACAATATAAAGTGATGTCATTGGTGAGGCAATGTGAAGAGATCCTTGAGCGAATTATGTCTGATAAGCAACTCGTTGACTCAACTCAGCTTGTTGACATATTTTATCCAAGCTGGCTTCAATGCAGCAAAACTTTTCCTTATGGGTTGCCAATTAATAGAGAAAGGCTTGAA</gDNA_template>
            <first_frame> L  F  T  C  Q  T  *  V  I  L  F  F  M  H  F  F  S  T  S  T  L  D  I  L  R  *  V  P  S  F  R  Q  F  Q  I  I  M  L  P  L  I  V  C  L  T  L  D  N  M  P  I  A  F  S  L  L  S  F  R  N  *  E  Q  K  K  *  F  F  L  L  F  R  E  G  I  K  S  K  F  *  N  L  L  Y  V  S  F  V  Y  K  P  N  F  L  Y  F  C  I  S  S  Y  C  L  I  F  L  K  T  T  D  S  S  Q  I  L  N  Q  T  Y  Q  A  *  H  Y  A  Y  R  Y  K  F  A  R  Y  C  S  M  R  L  L  V  Y  L  N  I  Y  L  I  A  A  D  S  L  L  H  L  N  I  V  D  F  G  V  *  S  L  L  I  E  V  F  E  L  T  I  *  S  D  V  I  G  E  A  M  *  R  D  P  *  A  N  Y  V  *  *  A  T  R  *  L  N  S  A  C  *  H  I  L  S  K  L  A  S  M  Q  Q  N  F  S  L  W  V  A  N  *  *  R  K  A  *  </first_frame>
            <second_frame>  C  S  P  A  R  H  K  L  F  C  S  S  C  T  S  S  V  H  L  H  W  T  Y  S  G  E  S  H  L  S  G  N  F  K  L  L  C  F  H  *  L  S  A  *  L  W  I  T  C  L  L  L  F  H  C  *  V  S  G  T  K  N  R  K  N  S  S  F  Y  Y  S  E  K  E  L  N  Q  N  F  K  I  C  S  M  *  V  L  C  I  N  Q  I  F  F  I  F  V  F  L  P  I  V  *  F  F  *  R  L  L  T  P  A  K  S  *  I  K  R  T  K  R  D  I  M  R  I  D  I  N  L  Q  G  I  V  L  C  D  F  *  F  T  *  I  F  I  S  *  L  L  I  H  C  Y  I  *  T  L  *  I  L  E  S  D  L  C  S  L  K  S  L  S  L  Q  Y  K  V  M  S  L  V  R  Q  C  E  E  I  L  E  R  I  M  S  D  K  Q  L  V  D  S  T  Q  L  V  D  I  F  Y  P  S  W  L  Q  C  S  K  T  F  P  Y  G  L  P  I  N  R  E  R  L  E </second_frame>
            <third_frame>   V  H  L  P  D  I  S  Y  S  V  L  H  A  L  L  Q  Y  I  Y  T  G  H  T  Q  V  S  P  I  F  Q  A  I  S  N  Y  Y  A  S  T  N  C  L  L  N  F  G  *  H  A  Y  C  F  F  I  V  E  F  Q  E  L  R  T  E  K  I  V  L  F  T  I  Q  R  R  N  *  I  K  I  L  K  F  A  L  C  E  F  C  V  *  T  K  F  S  L  F  L  Y  F  F  L  L  S  N  F  S  K  D  Y  *  L  Q  P  N  L  K  S  N  V  P  S  V  T  L  C  V  *  I  *  I  C  K  V  L  F  Y  A  T  F  S  L  L  E  Y  L  S  H  S  C  *  F  T  A  T  F  E  H  C  R  F  W  S  L  I  S  A  H  *  S  L  *  A  Y  N  I  K  *  C  H  W  *  G  N  V  K  R  S  L  S  E  L  C  L  I  S  N  S  L  T  Q  L  S  L  L  T  Y  F  I  Q  A  G  F  N  A  A  K  L  F  L  M  G  C  Q  L  I  E  K  G  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58249" stop="58037"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILESDLCSLKSLSLQYKVMSLVRQCEEILERIMSDKQLVDSTQLVDIFYPSWLQCSKTFPYGLPINRERLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="61181" PGL_stop="61392"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61181" e_stop="61392"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="61181" e_stop="61392" e_length="212"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61181" stop="61392"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATATATATATATTCAAGTAAAAGTATGAAAAGCAAGATTTCACATTCCAACAATGTACATGACATGAAAAAACATAAACAAAGTTTTCTCGGTAACAAAAGAACTCAAACACCCTCCCCCCTTCCCCCCAGAGCCTGGGGCAACTTATGTTGCTCATCAACAATTGCATTAAAAAAACTGAACACGTATAATATTACTGCAAGGAAGCAGTT</gDNA_template>
            <first_frame> I  Y  I  Y  S  S  K  S  M  K  S  K  I  S  H  S  N  N  V  H  D  M  K  K  H  K  Q  S  F  L  G  N  K  R  T  Q  T  P  S  P  L  P  P  R  A  W  G  N  L  C  C  S  S  T  I  A  L  K  K  L  N  T  Y  N  I  T  A  R  K  Q   </first_frame>
            <second_frame>  Y  I  Y  I  Q  V  K  V  *  K  A  R  F  H  I  P  T  M  Y  M  T  *  K  N  I  N  K  V  F  S  V  T  K  E  L  K  H  P  P  P  F  P  P  E  P  G  A  T  Y  V  A  H  Q  Q  L  H  *  K  N  *  T  R  I  I  L  L  Q  G  S  S  </second_frame>
            <third_frame>   I  Y  I  F  K  *  K  Y  E  K  Q  D  F  T  F  Q  Q  C  T  *  H  E  K  T  *  T  K  F  S  R  *  Q  K  N  S  N  T  L  P  P  S  P  Q  S  L  G  Q  L  M  L  L  I  N  N  C  I  K  K  T  E  H  V  *  Y  Y  C  K  E  A  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61181" stop="61390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYIYSSKSMKSKISHSNNVHDMKKHKQSFLGNKRTQTPSPLPPRAWGNLCCSSTIALKKLNTYNITARKQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="61944" PGL_stop="61224"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61944" e_stop="61932"/>
            <exon e_start="61831" e_stop="61653"/>
            <exon e_start="61566" e_stop="61224"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.945" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.680" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61944" e_stop="61932" e_length="13"/>
          </exon>
          <intron i_serial="1" don_prob="0.945" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61931" i_stop="61832" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61831" e_stop="61653" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.680" acc_prob="0.987">
            <gDNA_intron_boundary i_start="61652" i_stop="61567" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="0.889">
            <gDNA_exon_boundary e_start="61566" e_stop="61224" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61944" stop="61932"/>
              <exon start="61831" stop="61653"/>
              <exon start="61566" stop="61326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61793" stop="61653"/>
              <exon start="61566" stop="61224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339248" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCTGATAAGAAG : GTGGAGCTAGTGTCATTCTTCTTGATAGAGCTATGTCTAGTGGAGTATGAAATGCTTCGGTTCCCACCATCAATGCTTGCAGCTGCTGCTATCTTTACTGCACAATGCACTCTCGGTGTGTCTAAGGAGTGGAATAAAACCTGTGAGAAGCATAGCAGCTATGTCAAAGATCAACTTTT : GGAATGCTCAAAATTGATGGTTTGTTTCCATCAGAAGGCAGCAATTGGGAAACTTACTGGCGTGCACCGAAAGTACAGCACTTCTAAATATGGCTATGCTACTAGATGTGAACCAGCTTCTTTTCTATTAGAAGCATGGTTTTAGGATTCACTAGGAGGAGGAACACATGAGGAAACTGCTTCCTTGCAGTAATATTATACGTGTTCAGTTTTTTTAATGCAATTGTTGATGAGCAACATAAGTTGCCCCAGGCTCTGGGGGGAAGGGGGGAGGGTGTTTGAGTTCTTTTGTTACCGAGAAAACTTTGTTTATGTTTTTTCATGTCATGTACATTGTTGGAAT</gDNA_template>
            <first_frame> V  *  *  E   : G  G  A  S  V  I  L  L  D  R  A  M  S  S  G  V  *  N  A  S  V  P  T  I  N  A  C  S  C  C  Y  L  Y  C  T  M  H  S  R  C  V  *  G  V  E  *  N  L  *  E  A  *  Q  L  C  Q  R  S  T  F  :  G  M  L  K  I  D  G  L  F  P  S  E  G  S  N  W  E  T  Y  W  R  A  P  K  V  Q  H  F  *  I  W  L  C  Y  *  M  *  T  S  F  F  S  I  R  S  M  V  L  G  F  T  R  R  R  N  T  *  G  N  C  F  L  A  V  I  L  Y  V  F  S  F  F  N  A  I  V  D  E  Q  H  K  L  P  Q  A  L  G  G  R  G  E  G  V  *  V  L  L  L  P  R  K  L  C  L  C  F  F  M  S  C  T  L  L  E  </first_frame>
            <second_frame>  S  D  K  K  :  V  E  L  V  S  F  F  L  I  E  L  C  L  V  E  Y  E  M  L  R  F  P  P  S  M  L  A  A  A  A  I  F  T  A  Q  C  T  L  G  V  S  K  E  W  N  K  T  C  E  K  H  S  S  Y  V  K  D  Q  L  L :   E  C  S  K  L  M  V  C  F  H  Q  K  A  A  I  G  K  L  T  G  V  H  R  K  Y  S  T  S  K  Y  G  Y  A  T  R  C  E  P  A  S  F  L  L  E  A  W  F  *  D  S  L  G  G  G  T  H  E  E  T  A  S  L  Q  *  Y  Y  T  C  S  V  F  L  M  Q  L  L  M  S  N  I  S  C  P  R  L  W  G  E  G  G  R  V  F  E  F  F  C  Y  R  E  N  F  V  Y  V  F  S  C  H  V  H  C  W  N </second_frame>
            <third_frame>   L  I  R  R :   W  S  *  C  H  S  S  *  *  S  Y  V  *  W  S  M  K  C  F  G  S  H  H  Q  C  L  Q  L  L  L  S  L  L  H  N  A  L  S  V  C  L  R  S  G  I  K  P  V  R  S  I  A  A  M  S  K  I  N  F   : W  N  A  Q  N  *  W  F  V  S  I  R  R  Q  Q  L  G  N  L  L  A  C  T  E  S  T  A  L  L  N  M  A  M  L  L  D  V  N  Q  L  L  F  Y  *  K  H  G  F  R  I  H  *  E  E  E  H  M  R  K  L  L  P  C  S  N  I  I  R  V  Q  F  F  *  C  N  C  *  *  A  T  *  V  A  P  G  S  G  G  K  G  G  G  C  L  S  S  F  V  T  E  K  T  L  F  M  F  F  H  V  M  Y  I  V  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61943" stop="61932"/>
                    <exon start="61831" stop="61653"/>
                    <exon start="61566" stop="61422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDKKVELVSFFLIELCLVEYEMLRFPPSMLAAAAIFTAQCTLGVSKEWNKTCEKHSSYVKDQLLECSKLMVCFHQKAAIGKLTGVHRKYSTSKYGYATRCEPASFLLEAWF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="64308" PGL_stop="63527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64308" e_stop="64082"/>
            <exon e_start="63940" e_stop="63881"/>
            <exon e_start="63781" e_stop="63527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.689" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64308" e_stop="64082" e_length="227"/>
          </exon>
          <intron i_serial="1" don_prob="0.689" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64081" i_stop="63941" i_length="141"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63940" e_stop="63881" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="63880" i_stop="63782" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="63781" e_stop="63527" e_length="255"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64308" stop="64082"/>
              <exon start="63940" stop="63881"/>
              <exon start="63781" stop="63527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333213" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATCCCATGTTTACGATTCAATTTTATACACCCATTTCCCAAATCCTCTCTTTTTAATGAACCCTAACAAGATTAATCAGTAGAGGAACATTTTTATTTTTGAAAATCTTTGATTAGTTTCATGGGGTTCTTCAATTACTAGTCTTTAATCGATTTCTGGGATTTTTTTGGGTTGTTTCACCTCAAAGATCGGATCTTTTTCATCTAGTGTGGATCAAGTTCTCAG : TGAAGATGGCTGGATCAGATGAGAATTACCCAGGAGTGATTAGGCCTTCAAATCTTCAAG : GGGGATTGAGGCCTGGTGTTGGAGGAAAAGTGAATGGAGGGTTGGGGCAAAATAGGAGGGCACTAAGCACAATCAATAAGAATGTGATGGGAGCTCCCCCATTACACTGTGCTGTTGTCCACAAGAGAAATGACATTACTGAGTAAAAACTTCTTAAACCAGAGTACTCGATTCCATTTCTAGTTTTAATCTTGATTTCTCTACCTGTTTTTCAACTTTTTGTTTTAATTTCTTTCTAGAAACAAAGCCAGTGCT</gDNA_template>
            <first_frame> I  S  H  V  Y  D  S  I  L  Y  T  H  F  P  N  P  L  F  L  M  N  P  N  K  I  N  Q  *  R  N  I  F  I  F  E  N  L  *  L  V  S  W  G  S  S  I  T  S  L  *  S  I  S  G  I  F  L  G  C  F  T  S  K  I  G  S  F  S  S  S  V  D  Q  V  L  S :   E  D  G  W  I  R  *  E  L  P  R  S  D  *  A  F  K  S  S  R :   G  I  E  A  W  C  W  R  K  S  E  W  R  V  G  A  K  *  E  G  T  K  H  N  Q  *  E  C  D  G  S  S  P  I  T  L  C  C  C  P  Q  E  K  *  H  Y  *  V  K  T  S  *  T  R  V  L  D  S  I  S  S  F  N  L  D  F  S  T  C  F  S  T  F  C  F  N  F  F  L  E  T  K  P  V   </first_frame>
            <second_frame>  Y  P  M  F  T  I  Q  F  Y  T  P  I  S  Q  I  L  S  F  *  *  T  L  T  R  L  I  S  R  G  T  F  L  F  L  K  I  F  D  *  F  H  G  V  L  Q  L  L  V  F  N  R  F  L  G  F  F  W  V  V  S  P  Q  R  S  D  L  F  H  L  V  W  I  K  F  S   : V  K  M  A  G  S  D  E  N  Y  P  G  V  I  R  P  S  N  L  Q   : G  G  L  R  P  G  V  G  G  K  V  N  G  G  L  G  Q  N  R  R  A  L  S  T  I  N  K  N  V  M  G  A  P  P  L  H  C  A  V  V  H  K  R  N  D  I  T  E  *  K  L  L  K  P  E  Y  S  I  P  F  L  V  L  I  L  I  S  L  P  V  F  Q  L  F  V  L  I  S  F  *  K  Q  S  Q  C  </second_frame>
            <third_frame>   I  P  C  L  R  F  N  F  I  H  P  F  P  K  S  S  L  F  N  E  P  *  Q  D  *  S  V  E  E  H  F  Y  F  *  K  S  L  I  S  F  M  G  F  F  N  Y  *  S  L  I  D  F  W  D  F  F  G  L  F  H  L  K  D  R  I  F  F  I  *  C  G  S  S  S  Q  :  *  R  W  L  D  Q  M  R  I  T  Q  E  *  L  G  L  Q  I  F  K  :  G  D  *  G  L  V  L  E  E  K  *  M  E  G  W  G  K  I  G  G  H  *  A  Q  S  I  R  M  *  W  E  L  P  H  Y  T  V  L  L  S  T  R  E  M  T  L  L  S  K  N  F  L  N  Q  S  T  R  F  H  F  *  F  *  S  *  F  L  Y  L  F  F  N  F  L  F  *  F  L  S  R  N  K  A  S  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64190" stop="64082"/>
                    <exon start="63940" stop="63881"/>
                    <exon start="63781" stop="63636"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FHGVLQLLVFNRFLGFFWVVSPQRSDLFHLVWIKFSVKMAGSDENYPGVIRPSNLQGGLRPGVGGKVNGGLGQNRRALSTINKNVMGAPPLHCAVVHKRNDITE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="66216" PGL_stop="67212"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66216" e_stop="66539"/>
            <exon e_start="66766" e_stop="66882"/>
            <exon e_start="66954" e_stop="67212"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.839" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66216" e_stop="66539" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.839" acc_prob="0.992">
            <gDNA_intron_boundary i_start="66540" i_stop="66765" i_length="226"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66766" e_stop="66882" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.978">
            <gDNA_intron_boundary i_start="66883" i_stop="66953" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="0.996">
            <gDNA_exon_boundary e_start="66954" e_stop="67212" e_length="259"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66216" stop="66539"/>
              <exon start="66766" stop="66882"/>
              <exon start="66954" stop="67212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGAACAAGGGTTTAAAATGGATGAAGAAAATGATCAATCAAATCGTATTACAACTCCTATTGATAATAAGGATTTGGTATACGAACTTATGGGTATAATTCATATTATAAGTTCTTACGCAGAATTTAGGAGGACTCAAAGAAAGGAAAGTCGTAATCTTGTACGTAGGATGAAACTTTTATTACCCCTTTTAGAAGAAATTCGAGATTTCCAAGGAAAAATACCTGAATCAGGTGTTCATTGTTTGGTGAAAATGAAGAAGGCATTTCATTCTGCTAAAAAGTTGTTAAAAACTTGTCATTGTGGTAGCAAACTTTATCTG : GCTTTGGAAAGTGAGGCTGTTATAAGGAGATTTCATTCTGTATATGAAAAATTAAGCCAAACTTTGGATGGAATGCCTTATGAAGAACTTGGTATTTCAGATGAAGAGAAAGAACAG : GTGGAGTTGATGATCATTCAATTTAAAAGGTCTAAGAAACGAATTGATACTCAAGATATGGAACTCGCGATGGATTTGATGGTTTCATTGTCCTCGGAGAATGATCGAAATGCAGATAGTGCTAGTATAGAAAGGCTAGCGAAAAAACTGGAATTGCATACAGTTGAGGATTTAAAAGCTGAAATGATATCAGTTAATGAAGTTATAAAAGAAAGACGATCACATAATGCTGAGAACACACAACGAATCGTTGATCTTC</gDNA_template>
            <first_frame> F  E  Q  G  F  K  M  D  E  E  N  D  Q  S  N  R  I  T  T  P  I  D  N  K  D  L  V  Y  E  L  M  G  I  I  H  I  I  S  S  Y  A  E  F  R  R  T  Q  R  K  E  S  R  N  L  V  R  R  M  K  L  L  L  P  L  L  E  E  I  R  D  F  Q  G  K  I  P  E  S  G  V  H  C  L  V  K  M  K  K  A  F  H  S  A  K  K  L  L  K  T  C  H  C  G  S  K  L  Y  L  :  A  L  E  S  E  A  V  I  R  R  F  H  S  V  Y  E  K  L  S  Q  T  L  D  G  M  P  Y  E  E  L  G  I  S  D  E  E  K  E  Q  :  V  E  L  M  I  I  Q  F  K  R  S  K  K  R  I  D  T  Q  D  M  E  L  A  M  D  L  M  V  S  L  S  S  E  N  D  R  N  A  D  S  A  S  I  E  R  L  A  K  K  L  E  L  H  T  V  E  D  L  K  A  E  M  I  S  V  N  E  V  I  K  E  R  R  S  H  N  A  E  N  T  Q  R  I  V  D  L  </first_frame>
            <second_frame>  L  N  K  G  L  K  W  M  K  K  M  I  N  Q  I  V  L  Q  L  L  L  I  I  R  I  W  Y  T  N  L  W  V  *  F  I  L  *  V  L  T  Q  N  L  G  G  L  K  E  R  K  V  V  I  L  Y  V  G  *  N  F  Y  Y  P  F  *  K  K  F  E  I  S  K  E  K  Y  L  N  Q  V  F  I  V  W  *  K  *  R  R  H  F  I  L  L  K  S  C  *  K  L  V  I  V  V  A  N  F  I  W :   L  W  K  V  R  L  L  *  G  D  F  I  L  Y  M  K  N  *  A  K  L  W  M  E  C  L  M  K  N  L  V  F  Q  M  K  R  K  N  R :   W  S  *  *  S  F  N  L  K  G  L  R  N  E  L  I  L  K  I  W  N  S  R  W  I  *  W  F  H  C  P  R  R  M  I  E  M  Q  I  V  L  V  *  K  G  *  R  K  N  W  N  C  I  Q  L  R  I  *  K  L  K  *  Y  Q  L  M  K  L  *  K  K  D  D  H  I  M  L  R  T  H  N  E  S  L  I  F </second_frame>
            <third_frame>   *  T  R  V  *  N  G  *  R  K  *  S  I  K  S  Y  Y  N  S  Y  *  *  *  G  F  G  I  R  T  Y  G  Y  N  S  Y  Y  K  F  L  R  R  I  *  E  D  S  K  K  G  K  S  *  S  C  T  *  D  E  T  F  I  T  P  F  R  R  N  S  R  F  P  R  K  N  T  *  I  R  C  S  L  F  G  E  N  E  E  G  I  S  F  C  *  K  V  V  K  N  L  S  L  W  *  Q  T  L  S   : G  F  G  K  *  G  C  Y  K  E  I  S  F  C  I  *  K  I  K  P  N  F  G  W  N  A  L  *  R  T  W  Y  F  R  *  R  E  R  T   : G  G  V  D  D  H  S  I  *  K  V  *  E  T  N  *  Y  S  R  Y  G  T  R  D  G  F  D  G  F  I  V  L  G  E  *  S  K  C  R  *  C  *  Y  R  K  A  S  E  K  T  G  I  A  Y  S  *  G  F  K  S  *  N  D  I  S  *  *  S  Y  K  R  K  T  I  T  *  C  *  E  H  T  T  N  R  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66216" stop="66539"/>
                    <exon start="66766" stop="66882"/>
                    <exon start="66954" stop="67211"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEQGFKMDEENDQSNRITTPIDNKDLVYELMGIIHIISSYAEFRRTQRKESRNLVRRMKLLLPLLEEIRDFQGKIPESGVHCLVKMKKAFHSAKKLLKTCHCGSKLYLALESEAVIRRFHSVYEKLSQTLDGMPYEELGISDEEKEQVELMIIQFKRSKKRIDTQDMELAMDLMVSLSSENDRNADSASIERLAKKLELHTVEDLKAEMISVNEVIKERRSHNAENTQRIVDL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="67748" PGL_stop="69025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67748" e_stop="69025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="67748" e_stop="69025" e_length="1278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67748" stop="69025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAATCCAGAGAAACGAACATTGATAGCTAATTATGGAGGAATTCCACCACTGGTGTTGCTACTTTCCTATCCGGATTCAAAAATCCAGGAACATGCTGTGACAGCTCTTTTAAACTTGTCAATCGATGAATCAAACAAGAAACTTATATCCAGAGAAAACGCGATTCCTGAAATAATAGAGATTTTGCAAAATGGAAGTGTTGGAGCTAAAGAGAACTCTGCAGCAGCATTATTTAGCTTATCAATGCTTGATGAAAACAAAGTAGCTATAGGTTCGTTAAATGGCATCCCTCCGTTGATTGATCTGTTAAAAAACGGAACAATCAGAGGGAGGAAGGATGCCATTACTGCACTTTTCAATCTATGTTTCAACCATGCTAACAAAAGTATCGCGATCCAAGCTGGGATTGTAGCACCATTACTTCAACTACTAGAGGAAAAACACTTAGACATGGTTGATGAGACATTGTCAATATTGTTGATTCTCGCGACTCATCCAGAAGGCAGACAGGTAATTGGAAAGCTTTCCTTCATCGAAACACTTGTAAATTTGATGAAGGATGGCACTCCCAAGAACAAGGAATGTTCTGTTGCTGTGCTTTTCGAGTTGAGTACCTACAATTCAAATCTTATGCTTGCTGCTCTTCAATACGGCGTGTATGAATATCTAGTAGAGATAAGTAAGGAGGGAACTGATCGCGGCCAAAGGAAAGCAAAATCAATACTACAACTTATGACCAAAACTGAGCAGATCCCATATTGATAATGCAAAGTCCAAATGTACATCTGCTTAGCATTTGGCTCGTCCTGTCGTCCATGTAGGTCAACTTGGATCTATGTCCAAATTAACGAATATATATTTGTTACATGTTATATAATGTAAGAAAAAGAAACAAAACACGAGTGCTAAATAGAACTCGTTGAAGGGTTGTGTCTCTTCAGAAAAGGTAAAAGAAGTCCTAACGGAAACTGTATGAAGAACTTTCTCCAATGATTCAAGGCAAAGTTAGAAGAATTTTTACAGGAATATTTCTCCTTGTAATCCAGGTATGATCATAGACTATGTTACTCAGACTTTTCAAAATTGTTGACAAGTGCATGTCAGATACTCCAAAAAAATAGTGCATTTTGGAGAATCTAACATAAATGCAACAATAAATTTGAAGAGTCAAATCATAGATTGTGAACTTGCATTACAATCTAGTGTTGATTAGATGGATGTGATTGTTTTTATGTGACTAATGAAAACAAATTAATGGAGAAGAATCATGGGAAA</gDNA_template>
            <first_frame> E  N  P  E  K  R  T  L  I  A  N  Y  G  G  I  P  P  L  V  L  L  L  S  Y  P  D  S  K  I  Q  E  H  A  V  T  A  L  L  N  L  S  I  D  E  S  N  K  K  L  I  S  R  E  N  A  I  P  E  I  I  E  I  L  Q  N  G  S  V  G  A  K  E  N  S  A  A  A  L  F  S  L  S  M  L  D  E  N  K  V  A  I  G  S  L  N  G  I  P  P  L  I  D  L  L  K  N  G  T  I  R  G  R  K  D  A  I  T  A  L  F  N  L  C  F  N  H  A  N  K  S  I  A  I  Q  A  G  I  V  A  P  L  L  Q  L  L  E  E  K  H  L  D  M  V  D  E  T  L  S  I  L  L  I  L  A  T  H  P  E  G  R  Q  V  I  G  K  L  S  F  I  E  T  L  V  N  L  M  K  D  G  T  P  K  N  K  E  C  S  V  A  V  L  F  E  L  S  T  Y  N  S  N  L  M  L  A  A  L  Q  Y  G  V  Y  E  Y  L  V  E  I  S  K  E  G  T  D  R  G  Q  R  K  A  K  S  I  L  Q  L  M  T  K  T  E  Q  I  P  Y  *  *  C  K  V  Q  M  Y  I  C  L  A  F  G  S  S  C  R  P  C  R  S  T  W  I  Y  V  Q  I  N  E  Y  I  F  V  T  C  Y  I  M  *  E  K  E  T  K  H  E  C  *  I  E  L  V  E  G  L  C  L  F  R  K  G  K  R  S  P  N  G  N  C  M  K  N  F  L  Q  *  F  K  A  K  L  E  E  F  L  Q  E  Y  F  S  L  *  S  R  Y  D  H  R  L  C  Y  S  D  F  S  K  L  L  T  S  A  C  Q  I  L  Q  K  N  S  A  F  W  R  I  *  H  K  C  N  N  K  F  E  E  S  N  H  R  L  *  T  C  I  T  I  *  C  *  L  D  G  C  D  C  F  Y  V  T  N  E  N  K  L  M  E  K  N  H  G  K </first_frame>
            <second_frame>  K  I  Q  R  N  E  H  *  *  L  I  M  E  E  F  H  H  W  C  C  Y  F  P  I  R  I  Q  K  S  R  N  M  L  *  Q  L  F  *  T  C  Q  S  M  N  Q  T  R  N  L  Y  P  E  K  T  R  F  L  K  *  *  R  F  C  K  M  E  V  L  E  L  K  R  T  L  Q  Q  H  Y  L  A  Y  Q  C  L  M  K  T  K  *  L  *  V  R  *  M  A  S  L  R  *  L  I  C  *  K  T  E  Q  S  E  G  G  R  M  P  L  L  H  F  S  I  Y  V  S  T  M  L  T  K  V  S  R  S  K  L  G  L  *  H  H  Y  F  N  Y  *  R  K  N  T  *  T  W  L  M  R  H  C  Q  Y  C  *  F  S  R  L  I  Q  K  A  D  R  *  L  E  S  F  P  S  S  K  H  L  *  I  *  *  R  M  A  L  P  R  T  R  N  V  L  L  L  C  F  S  S  *  V  P  T  I  Q  I  L  C  L  L  L  F  N  T  A  C  M  N  I  *  *  R  *  V  R  R  E  L  I  A  A  K  G  K  Q  N  Q  Y  Y  N  L  *  P  K  L  S  R  S  H  I  D  N  A  K  S  K  C  T  S  A  *  H  L  A  R  P  V  V  H  V  G  Q  L  G  S  M  S  K  L  T  N  I  Y  L  L  H  V  I  *  C  K  K  K  K  Q  N  T  S  A  K  *  N  S  L  K  G  C  V  S  S  E  K  V  K  E  V  L  T  E  T  V  *  R  T  F  S  N  D  S  R  Q  S  *  K  N  F  Y  R  N  I  S  P  C  N  P  G  M  I  I  D  Y  V  T  Q  T  F  Q  N  C  *  Q  V  H  V  R  Y  S  K  K  I  V  H  F  G  E  S  N  I  N  A  T  I  N  L  K  S  Q  I  I  D  C  E  L  A  L  Q  S  S  V  D  *  M  D  V  I  V  F  M  *  L  M  K  T  N  *  W  R  R  I  M  G   </second_frame>
            <third_frame>   K  S  R  E  T  N  I  D  S  *  L  W  R  N  S  T  T  G  V  A  T  F  L  S  G  F  K  N  P  G  T  C  C  D  S  S  F  K  L  V  N  R  *  I  K  Q  E  T  Y  I  Q  R  K  R  D  S  *  N  N  R  D  F  A  K  W  K  C  W  S  *  R  E  L  C  S  S  I  I  *  L  I  N  A  *  *  K  Q  S  S  Y  R  F  V  K  W  H  P  S  V  D  *  S  V  K  K  R  N  N  Q  R  E  E  G  C  H  Y  C  T  F  Q  S  M  F  Q  P  C  *  Q  K  Y  R  D  P  S  W  D  C  S  T  I  T  S  T  T  R  G  K  T  L  R  H  G  *  *  D  I  V  N  I  V  D  S  R  D  S  S  R  R  Q  T  G  N  W  K  A  F  L  H  R  N  T  C  K  F  D  E  G  W  H  S  Q  E  Q  G  M  F  C  C  C  A  F  R  V  E  Y  L  Q  F  K  S  Y  A  C  C  S  S  I  R  R  V  *  I  S  S  R  D  K  *  G  G  N  *  S  R  P  K  E  S  K  I  N  T  T  T  Y  D  Q  N  *  A  D  P  I  L  I  M  Q  S  P  N  V  H  L  L  S  I  W  L  V  L  S  S  M  *  V  N  L  D  L  C  P  N  *  R  I  Y  I  C  Y  M  L  Y  N  V  R  K  R  N  K  T  R  V  L  N  R  T  R  *  R  V  V  S  L  Q  K  R  *  K  K  S  *  R  K  L  Y  E  E  L  S  P  M  I  Q  G  K  V  R  R  I  F  T  G  I  F  L  L  V  I  Q  V  *  S  *  T  M  L  L  R  L  F  K  I  V  D  K  C  M  S  D  T  P  K  K  *  C  I  L  E  N  L  T  *  M  Q  Q  *  I  *  R  V  K  S  *  I  V  N  L  H  Y  N  L  V  L  I  R  W  M  *  L  F  L  C  D  *  *  K  Q  I  N  G  E  E  S  W  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67748" stop="68512"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>762</number_coding_nucleotides>
                  <number_encoded_amino_acids>254</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ENPEKRTLIANYGGIPPLVLLLSYPDSKIQEHAVTALLNLSIDESNKKLISRENAIPEIIEILQNGSVGAKENSAAALFSLSMLDENKVAIGSLNGIPPLIDLLKNGTIRGRKDAITALFNLCFNHANKSIAIQAGIVAPLLQLLEEKHLDMVDETLSILLILATHPEGRQVIGKLSFIETLVNLMKDGTPKNKECSVAVLFELSTYNSNLMLAALQYGVYEYLVEISKEGTDRGQRKAKSILQLMTKTEQIPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="72630" PGL_stop="77011"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72630" e_stop="72702"/>
            <exon e_start="74439" e_stop="75190"/>
            <exon e_start="75387" e_stop="75470"/>
            <exon e_start="76675" e_stop="77011"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.942" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.878" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72630" e_stop="72702" e_length="73"/>
          </exon>
          <intron i_serial="1" don_prob="0.942" acc_prob="0.997">
            <gDNA_intron_boundary i_start="72703" i_stop="74438" i_length="1736"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74439" e_stop="75190" e_length="752"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.995">
            <gDNA_intron_boundary i_start="75191" i_stop="75386" i_length="196"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="75387" e_stop="75470" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.878">
            <gDNA_intron_boundary i_start="75471" i_stop="76674" i_length="1204"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76675" e_stop="77011" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72630" stop="72702"/>
              <exon start="74439" stop="75190"/>
              <exon start="75387" stop="75470"/>
              <exon start="76675" stop="77011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTGAAACCCCTCTCACTGGCGCCGTCTCTTCCATCTTTGCTCACAGTTTTTGATTTACACCTTTTTACA : GCTTCATTTTGATAGTTTTCTGCCTCCGAAGGGTGTTGAGAATAATCTCAAAATGGTCAACTCTGAACCCCTTCATAATGGTGTGACCACTGGTGGAACTGGTATGCCAGCGTTTGATAAGCAACTTCCTGGTGTATCAAGAAAGACAGCTTTGAGAGATGTGCAGAATCAAAAAACCAGCTTGATGAGTAGCCATCAAGAAAATTCACATTTTTTAGGCGTAAGACCTATTGCAGATCCAACTAGGGTATGTGGAACTAAGAGGCTTACACCTGAGCGTCCTTCAAATACCAATTCTAGCAAATCTTTGAGCAGCAATGATACAAATGACAATATACTTAATGCTCGACGAAGATTTGATCTAGAACTGGGTAAAGGAAGACTTCAGAGCAATGTGGACAAATTTGTGGAGGCTACTCACTCAAAGAACCTGAGTCAGTTGCAGAGGACAATTCCTCAAAAGCAAAATCTACAGAGGGAAGGTAGTAATGGTCATCCTCCTGTAGCATCACCAAAGCATTTGGCACCTATGATGACATTTTCTCATGGTGGACCATCAATTCCTAATTCTATTGGCAAGGCTGCTAACAACTCTCGTGCTCTTCCAATTGATTCTTCTAAGCTTTCTCCCCAGCCAATGCGTACTTTGGATGTCAAGGCGGAAGAAGATCAGAAATTGACAGAACATTTCATTCGTCTGCAGAAGTTCCTGAAACAGTGTGATGAAGCAAACCAAACAGAATACCTTCAGC : TGCTTCTACGTTTGTCACCACCTGAGCTTAGCAGACATGCCGTTGACTTGGAGAAAAGGGCTATCCAGTTGACAATAGAAGAAG : GAAAGGAGATGCAACGAGTGAAGAACCTCAATGTTTTGGGAAAATCCACCCTGTTTTCCAGCTTAACTCAGACAGTTCCATTAGTCCCAATCAAGAAATGATGAAGCTAATGGCAATAATTCATGTTGCACTGATGCAATGCCTGTTTTAAAACTTGTACTCCACTGGGTACAAGATCTTGAGAGGAGGCTATTAGGCGTTGGCTTCTTTAGACATCTATAGTCTTTTTTTTCTCTTTATAGTAAGTTTTTTCCTTTTGATTAGCTAGCCCTCTAGAGATGAAGAAGTTATCAAACACTGTACTTTGGTATTCTTTTGGGTATAAGCAGTTCATACT</gDNA_template>
            <first_frame> S  F  E  T  P  L  T  G  A  V  S  S  I  F  A  H  S  F  *  F  T  P  F  Y   : S  F  I  L  I  V  F  C  L  R  R  V  L  R  I  I  S  K  W  S  T  L  N  P  F  I  M  V  *  P  L  V  E  L  V  C  Q  R  L  I  S  N  F  L  V  Y  Q  E  R  Q  L  *  E  M  C  R  I  K  K  P  A  *  *  V  A  I  K  K  I  H  I  F  *  A  *  D  L  L  Q  I  Q  L  G  Y  V  E  L  R  G  L  H  L  S  V  L  Q  I  P  I  L  A  N  L  *  A  A  M  I  Q  M  T  I  Y  L  M  L  D  E  D  L  I  *  N  W  V  K  E  D  F  R  A  M  W  T  N  L  W  R  L  L  T  Q  R  T  *  V  S  C  R  G  Q  F  L  K  S  K  I  Y  R  G  K  V  V  M  V  I  L  L  *  H  H  Q  S  I  W  H  L  *  *  H  F  L  M  V  D  H  Q  F  L  I  L  L  A  R  L  L  T  T  L  V  L  F  Q  L  I  L  L  S  F  L  P  S  Q  C  V  L  W  M  S  R  R  K  K  I  R  N  *  Q  N  I  S  F  V  C  R  S  S  *  N  S  V  M  K  Q  T  K  Q  N  T  F  S  :  C  F  Y  V  C  H  H  L  S  L  A  D  M  P  L  T  W  R  K  G  L  S  S  *  Q  *  K  K  :  E  R  R  C  N  E  *  R  T  S  M  F  W  E  N  P  P  C  F  P  A  *  L  R  Q  F  H  *  S  Q  S  R  N  D  E  A  N  G  N  N  S  C  C  T  D  A  M  P  V  L  K  L  V  L  H  W  V  Q  D  L  E  R  R  L  L  G  V  G  F  F  R  H  L  *  S  F  F  S  L  Y  S  K  F  F  P  F  D  *  L  A  L  *  R  *  R  S  Y  Q  T  L  Y  F  G  I  L  L  G  I  S  S  S  Y  </first_frame>
            <second_frame>  L  L  K  P  L  S  L  A  P  S  L  P  S  L  L  T  V  F  D  L  H  L  F  T  :  A  S  F  *  *  F  S  A  S  E  G  C  *  E  *  S  Q  N  G  Q  L  *  T  P  S  *  W  C  D  H  W  W  N  W  Y  A  S  V  *  *  A  T  S  W  C  I  K  K  D  S  F  E  R  C  A  E  S  K  N  Q  L  D  E  *  P  S  R  K  F  T  F  F  R  R  K  T  Y  C  R  S  N  *  G  M  W  N  *  E  A  Y  T  *  A  S  F  K  Y  Q  F  *  Q  I  F  E  Q  Q  *  Y  K  *  Q  Y  T  *  C  S  T  K  I  *  S  R  T  G  *  R  K  T  S  E  Q  C  G  Q  I  C  G  G  Y  S  L  K  E  P  E  S  V  A  E  D  N  S  S  K  A  K  S  T  E  G  R  *  *  W  S  S  S  C  S  I  T  K  A  F  G  T  Y  D  D  I  F  S  W  W  T  I  N  S  *  F  Y  W  Q  G  C  *  Q  L  S  C  S  S  N  *  F  F  *  A  F  S  P  A  N  A  Y  F  G  C  Q  G  G  R  R  S  E  I  D  R  T  F  H  S  S  A  E  V  P  E  T  V  *  *  S  K  P  N  R  I  P  S  A :   A  S  T  F  V  T  T  *  A  *  Q  T  C  R  *  L  G  E  K  G  Y  P  V  D  N  R  R  R :   K  G  D  A  T  S  E  E  P  Q  C  F  G  K  I  H  P  V  F  Q  L  N  S  D  S  S  I  S  P  N  Q  E  M  M  K  L  M  A  I  I  H  V  A  L  M  Q  C  L  F  *  N  L  Y  S  T  G  Y  K  I  L  R  G  G  Y  *  A  L  A  S  L  D  I  Y  S  L  F  F  L  F  I  V  S  F  F  L  L  I  S  *  P  S  R  D  E  E  V  I  K  H  C  T  L  V  F  F  W  V  *  A  V  H  T </second_frame>
            <third_frame>   F  *  N  P  S  H  W  R  R  L  F  H  L  C  S  Q  F  L  I  Y  T  F  L  Q :   L  H  F  D  S  F  L  P  P  K  G  V  E  N  N  L  K  M  V  N  S  E  P  L  H  N  G  V  T  T  G  G  T  G  M  P  A  F  D  K  Q  L  P  G  V  S  R  K  T  A  L  R  D  V  Q  N  Q  K  T  S  L  M  S  S  H  Q  E  N  S  H  F  L  G  V  R  P  I  A  D  P  T  R  V  C  G  T  K  R  L  T  P  E  R  P  S  N  T  N  S  S  K  S  L  S  S  N  D  T  N  D  N  I  L  N  A  R  R  R  F  D  L  E  L  G  K  G  R  L  Q  S  N  V  D  K  F  V  E  A  T  H  S  K  N  L  S  Q  L  Q  R  T  I  P  Q  K  Q  N  L  Q  R  E  G  S  N  G  H  P  P  V  A  S  P  K  H  L  A  P  M  M  T  F  S  H  G  G  P  S  I  P  N  S  I  G  K  A  A  N  N  S  R  A  L  P  I  D  S  S  K  L  S  P  Q  P  M  R  T  L  D  V  K  A  E  E  D  Q  K  L  T  E  H  F  I  R  L  Q  K  F  L  K  Q  C  D  E  A  N  Q  T  E  Y  L  Q   : L  L  L  R  L  S  P  P  E  L  S  R  H  A  V  D  L  E  K  R  A  I  Q  L  T  I  E  E   : G  K  E  M  Q  R  V  K  N  L  N  V  L  G  K  S  T  L  F  S  S  L  T  Q  T  V  P  L  V  P  I  K  K  *  *  S  *  W  Q  *  F  M  L  H  *  C  N  A  C  F  K  T  C  T  P  L  G  T  R  S  *  E  E  A  I  R  R  W  L  L  *  T  S  I  V  F  F  F  S  L  *  *  V  F  S  F  *  L  A  S  P  L  E  M  K  K  L  S  N  T  V  L  W  Y  S  F  G  Y  K  Q  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72638" stop="72702"/>
                    <exon start="74439" stop="75190"/>
                    <exon start="75387" stop="75470"/>
                    <exon start="76675" stop="76775"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NPSHWRRLFHLCSQFLIYTFLQLHFDSFLPPKGVENNLKMVNSEPLHNGVTTGGTGMPAFDKQLPGVSRKTALRDVQNQKTSLMSSHQENSHFLGVRPIADPTRVCGTKRLTPERPSNTNSSKSLSSNDTNDNILNARRRFDLELGKGRLQSNVDKFVEATHSKNLSQLQRTIPQKQNLQREGSNGHPPVASPKHLAPMMTFSHGGPSIPNSIGKAANNSRALPIDSSKLSPQPMRTLDVKAEEDQKLTEHFIRLQKFLKQCDEANQTEYLQLLLRLSPPELSRHAVDLEKRAIQLTIEEGKEMQRVKNLNVLGKSTLFSSLTQTVPLVPIKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="+" PGL_start="78846" PGL_stop="81999"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78846" e_stop="78917"/>
            <exon e_start="79589" e_stop="79685"/>
            <exon e_start="80630" e_stop="80907"/>
            <exon e_start="81532" e_stop="81999"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.954" acc_prob="0.925" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.738" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78846" e_stop="78917" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.954" acc_prob="0.925">
            <gDNA_intron_boundary i_start="78918" i_stop="79588" i_length="671"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79589" e_stop="79685" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="79686" i_stop="80629" i_length="944"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80630" e_stop="80907" e_length="278"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.738">
            <gDNA_intron_boundary i_start="80908" i_stop="81531" i_length="624"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="81532" e_stop="81999" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78846" stop="78917"/>
              <exon start="79589" stop="79685"/>
              <exon start="80630" stop="80907"/>
              <exon start="81532" stop="81999"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATTTCTTCTTCCGTTTTCTCTCTTTCAGTCTAAATATTTTTCTCTTTCTTTTGCCATGGATCCTTACAAG : TATCGTCCTTCAAGTGCTGCCAATTCCCCCTTCATGACAACTAACTCTGGTGCTCCTGTGTATAACAACAATTCTTCCTTGACTGTTGGAACTAGAG : GGCCAATTCTTCTCGAGGATTATCATCTGCTGGAGAAGATTGCCAATTTTGATCGTGAGAGAATCCCAGAGCGTGTTGTTCATGCCAGAGGTGCCAGTGCCAAGGGTTTCTTTGAGGTCACACATGATATATCCCATCTTACATGTGCTGATTTTCTTCGAGCTCCTGGTGTCCAGACACCTGTTATTGTGAGGTTCTCTACTGTTATCCACGAGCGTGGAAGCCCTGAAACCCTCAGGGACCCCAGAGGATTTGCTGTAAAATTTTACACCAGAGAG : GGTAACTTTGATTTAGTTGGAAACAACTTCCCTGTCTTCTTCGTCCGTGATGGAATGAAGTTCCCTGACATGGTTCATGCCCTGAAACCAAATCCAAAGTCCCACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCTCACCATCCAGAAAGTCTTCATATGTTCAGTTTCCTGTTTGATGATCTGGGAATTCCACAAGATTACAGGCACATGGATGGTTTCGGTGTTAATACCTACATGCTGATCAACAAAGCTGGGAAAGCACAGTATGTGAAATTCCATTGGAAGCCAACTTGTGGAGTCAAATGCTTGTTGGATGAAGAAGCTATTAAGGTCGGTGGATCAAATCATAGTCATGCCACCAAGGATCTCTATGATTCAATTGCTGCTGGGAACTATCCAGAGTGGAAACTGTTCATCCAAACTATTGATCCTGATCATGAAGACAGATTTGACTTTGACCCC</gDNA_template>
            <first_frame> K  F  L  L  P  F  S  L  F  Q  S  K  Y  F  S  L  S  F  A  M  D  P  Y  K  :  Y  R  P  S  S  A  A  N  S  P  F  M  T  T  N  S  G  A  P  V  Y  N  N  N  S  S  L  T  V  G  T  R   : G  P  I  L  L  E  D  Y  H  L  L  E  K  I  A  N  F  D  R  E  R  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  V  Q  T  P  V  I  V  R  F  S  T  V  I  H  E  R  G  S  P  E  T  L  R  D  P  R  G  F  A  V  K  F  Y  T  R  E  :  G  N  F  D  L  V  G  N  N  F  P  V  F  F  V  R  D  G  M  K  F  P  D  M  V  H  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  H  H  P  E  S  L  H  M  F  S  F  L  F  D  D  L  G  I  P  Q  D  Y  R  H  M  D  G  F  G  V  N  T  Y  M  L  I  N  K  A  G  K  A  Q  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  L  L  D  E  E  A  I  K  V  G  G  S  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  I  D  P  D  H  E  D  R  F  D  F  D  P </first_frame>
            <second_frame>  N  F  F  F  R  F  L  S  F  S  L  N  I  F  L  F  L  L  P  W  I  L  T  S :   I  V  L  Q  V  L  P  I  P  P  S  *  Q  L  T  L  V  L  L  C  I  T  T  I  L  P  *  L  L  E  L  E  :  G  Q  F  F  S  R  I  I  I  C  W  R  R  L  P  I  L  I  V  R  E  S  Q  S  V  L  F  M  P  E  V  P  V  P  R  V  S  L  R  S  H  M  I  Y  P  I  L  H  V  L  I  F  F  E  L  L  V  S  R  H  L  L  L  *  G  S  L  L  L  S  T  S  V  E  A  L  K  P  S  G  T  P  E  D  L  L  *  N  F  T  P  E  R :   V  T  L  I  *  L  E  T  T  S  L  S  S  S  S  V  M  E  *  S  S  L  T  W  F  M  P  *  N  Q  I  Q  S  P  T  F  R  R  T  G  G  S  L  I  S  S  L  T  I  Q  K  V  F  I  C  S  V  S  C  L  M  I  W  E  F  H  K  I  T  G  T  W  M  V  S  V  L  I  P  T  C  *  S  T  K  L  G  K  H  S  M  *  N  S  I  G  S  Q  L  V  E  S  N  A  C  W  M  K  K  L  L  R  S  V  D  Q  I  I  V  M  P  P  R  I  S  M  I  Q  L  L  L  G  T  I  Q  S  G  N  C  S  S  K  L  L  I  L  I  M  K  T  D  L  T  L  T   </second_frame>
            <third_frame>   I  S  S  S  V  F  S  L  S  V  *  I  F  F  S  F  F  C  H  G  S  L  Q   : V  S  S  F  K  C  C  Q  F  P  L  H  D  N  *  L  W  C  S  C  V  *  Q  Q  F  F  L  D  C  W  N  *  R :   A  N  S  S  R  G  L  S  S  A  G  E  D  C  Q  F  *  S  *  E  N  P  R  A  C  C  S  C  Q  R  C  Q  C  Q  G  F  L  *  G  H  T  *  Y  I  P  S  Y  M  C  *  F  S  S  S  S  W  C  P  D  T  C  Y  C  E  V  L  Y  C  Y  P  R  A  W  K  P  *  N  P  Q  G  P  Q  R  I  C  C  K  I  L  H  Q  R   : G  *  L  *  F  S  W  K  Q  L  P  C  L  L  R  P  *  W  N  E  V  P  *  H  G  S  C  P  E  T  K  S  K  V  P  H  S  G  E  L  E  D  P  *  F  L  L  S  P  S  R  K  S  S  Y  V  Q  F  P  V  *  *  S  G  N  S  T  R  L  Q  A  H  G  W  F  R  C  *  Y  L  H  A  D  Q  Q  S  W  E  S  T  V  C  E  I  P  L  E  A  N  L  W  S  Q  M  L  V  G  *  R  S  Y  *  G  R  W  I  K  S  *  S  C  H  Q  G  S  L  *  F  N  C  C  W  E  L  S  R  V  E  T  V  H  P  N  Y  *  S  *  S  *  R  Q  I  *  L  *  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78846" stop="78917"/>
                    <exon start="79589" stop="79685"/>
                    <exon start="80630" stop="80907"/>
                    <exon start="81532" stop="81999"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>915</number_coding_nucleotides>
                  <number_encoded_amino_acids>305</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLLPFSLFQSKYFSLSFAMDPYKYRPSSAANSPFMTTNSGAPVYNNNSSLTVGTRGPILLEDYHLLEKIANFDRERIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLFDDLGIPQDYRHMDGFGVNTYMLINKAGKAQYVKFHWKPTCGVKCLLDEEAIKVGGSNHSHATKDLYDSIAAGNYPEWKLFIQTIDPDHEDRFDFDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="82094" PGL_stop="83380"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="82094" e_stop="82308"/>
            <exon e_start="82572" e_stop="82661"/>
            <exon e_start="82775" e_stop="82842"/>
            <exon e_start="82927" e_stop="83020"/>
            <exon e_start="83119" e_stop="83380"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.766" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="82094" e_stop="82308" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="82309" i_stop="82571" i_length="263"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="82572" e_stop="82661" e_length="90"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.998">
            <gDNA_intron_boundary i_start="82662" i_stop="82774" i_length="113"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="82775" e_stop="82842" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.766" acc_prob="0.930">
            <gDNA_intron_boundary i_start="82843" i_stop="82926" i_length="84"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="82927" e_stop="83020" e_length="94"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="83021" i_stop="83118" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="83119" e_stop="83380" e_length="262"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82094" stop="82308"/>
              <exon start="82572" stop="82661"/>
              <exon start="82775" stop="82842"/>
              <exon start="82927" stop="83020"/>
              <exon start="83119" stop="83380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323590" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="82646" stop="82661"/>
              <exon start="82775" stop="82842"/>
              <exon start="82927" stop="83020"/>
              <exon start="83119" stop="83380"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337855" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATGAGCAGCTTGCTTTTTGCCCTGCCATTATTGTCCCTGGTGTTTACTATTCGGATGATAAGCTTCTCCAAACTAGGGTATTCTCATATGCTGATACCCAGAGACACCGCCTTGGTCCAAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTGTGCTCATCACAATAATCACCATGAAGGTCTCATGAATTTCATGCACCGTGATGAAGAG : GTCAACTATTTGCCCTCAAGGCTTGATCCTTGTCGTCATGCGGAGCAGTACCCTATTCCTCCTCGTGTCTTGACAGGAAAACGCGAAAAG : GTCATCATTGAGAAAGAGAACAACTTTAAGCAGCCAGGAGAACATTACAGATCTTGGGCACCGGACAG : GCAAGAAAGATTTTTGTGCAGATGGGTTGATGCTCTATCTGATCCTCGAGCCACTCATGAAATTCGCAGTATCTGGATCTCATACTGGTCACAG : GCTGACAAGTCTCTTGGTCAGAAGCTCGCGTCTCGTCTCAATATAAGGCCTACAATGTGAAGATGAAAATGTGTTGGTGTAGTGAAGAAGTAATCCAAGAAAAAAATGTTTGTTTTGGGTGGTAGTGTGGTTGTGTACCAACAAACTTTCTTGTGTTAGTTCTGATCACTTTCTGAATAAATTGAACGTTTTAGTCTCATAAAGTGGGTGTTTCTATGAGGTTATATCATACATAATAACGAATATACAGTTGGATCCTAAA</gDNA_template>
            <first_frame> R  M  S  S  L  L  F  A  L  P  L  L  S  L  V  F  T  I  R  M  I  S  F  S  K  L  G  Y  S  H  M  L  I  P  R  D  T  A  L  V  Q  T  I  C  S  S  Q  L  M  L  P  S  V  L  I  T  I  I  T  M  K  V  S  *  I  S  C  T  V  M  K  R :   S  T  I  C  P  Q  G  L  I  L  V  V  M  R  S  S  T  L  F  L  L  V  S  *  Q  E  N  A  K  R :   S  S  L  R  K  R  T  T  L  S  S  Q  E  N  I  T  D  L  G  H  R  T   : G  K  K  D  F  C  A  D  G  L  M  L  Y  L  I  L  E  P  L  M  K  F  A  V  S  G  S  H  T  G  H  R :   L  T  S  L  L  V  R  S  S  R  L  V  S  I  *  G  L  Q  C  E  D  E  N  V  L  V  *  *  R  S  N  P  R  K  K  C  L  F  W  V  V  V  W  L  C  T  N  K  L  S  C  V  S  S  D  H  F  L  N  K  L  N  V  L  V  S  *  S  G  C  F  Y  E  V  I  S  Y  I  I  T  N  I  Q  L  D  P  K </first_frame>
            <second_frame>  E  *  A  A  C  F  L  P  C  H  Y  C  P  W  C  L  L  F  G  *  *  A  S  P  N  *  G  I  L  I  C  *  Y  P  E  T  P  P  W  S  K  L  S  A  A  P  S  *  C  S  Q  V  C  S  S  Q  *  S  P  *  R  S  H  E  F  H  A  P  *  *  R   : G  Q  L  F  A  L  K  A  *  S  L  S  S  C  G  A  V  P  Y  S  S  S  C  L  D  R  K  T  R  K   : G  H  H  *  E  R  E  Q  L  *  A  A  R  R  T  L  Q  I  L  G  T  G  Q  :  A  R  K  I  F  V  Q  M  G  *  C  S  I  *  S  S  S  H  S  *  N  S  Q  Y  L  D  L  I  L  V  T   : G  *  Q  V  S  W  S  E  A  R  V  S  S  Q  Y  K  A  Y  N  V  K  M  K  M  C  W  C  S  E  E  V  I  Q  E  K  N  V  C  F  G  W  *  C  G  C  V  P  T  N  F  L  V  L  V  L  I  T  F  *  I  N  *  T  F  *  S  H  K  V  G  V  S  M  R  L  Y  H  T  *  *  R  I  Y  S  W  I  L   </second_frame>
            <third_frame>   N  E  Q  L  A  F  C  P  A  I  I  V  P  G  V  Y  Y  S  D  D  K  L  L  Q  T  R  V  F  S  Y  A  D  T  Q  R  H  R  L  G  P  N  Y  L  Q  L  P  V  N  A  P  K  C  A  H  H  N  N  H  H  E  G  L  M  N  F  M  H  R  D  E  E  :  V  N  Y  L  P  S  R  L  D  P  C  R  H  A  E  Q  Y  P  I  P  P  R  V  L  T  G  K  R  E  K  :  V  I  I  E  K  E  N  N  F  K  Q  P  G  E  H  Y  R  S  W  A  P  D  R :   Q  E  R  F  L  C  R  W  V  D  A  L  S  D  P  R  A  T  H  E  I  R  S  I  W  I  S  Y  W  S  Q  :  A  D  K  S  L  G  Q  K  L  A  S  R  L  N  I  R  P  T  M  *  R  *  K  C  V  G  V  V  K  K  *  S  K  K  K  M  F  V  L  G  G  S  V  V  V  Y  Q  Q  T  F  L  C  *  F  *  S  L  S  E  *  I  E  R  F  S  L  I  K  W  V  F  L  *  G  Y  I  I  H  N  N  E  Y  T  V  G  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="82096" stop="82308"/>
                    <exon start="82572" stop="82661"/>
                    <exon start="82775" stop="82842"/>
                    <exon start="82927" stop="83020"/>
                    <exon start="83119" stop="83178"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NEQLAFCPAIIVPGVYYSDDKLLQTRVFSYADTQRHRLGPNYLQLPVNAPKCAHHNNHHEGLMNFMHRDEEVNYLPSRLDPCRHAEQYPIPPRVLTGKREKVIIEKENNFKQPGEHYRSWAPDRQERFLCRWVDALSDPRATHEIRSIWISYWSQADKSLGQKLASRLNIRPTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="+" PGL_start="84639" PGL_stop="86050"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84639" e_stop="86050"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="84639" e_stop="86050" e_length="1412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84639" stop="86050"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323930" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGGCGGAAGAAGAAGAAATCAGAAATGGGAGCAAGCAGTGATCCGAACCAGCAAGATGGTTCCGACGAACAGCAGAGACGCTCCGAGATCTACACCTACGAGGCTCCATGGCACATATACGCTATGAATTGGAGTGTTCGCAAGGATAAGAAGTATCGTCTCGCCATTGCTAGCTTGCTCGAGCAGTACCAAAACCGAGTTGAGATTGTGCAGCTTGATGACTCTAATGGTGAGATTCGGTCCGACCCGAAACTCTCATTTGAGCACCCGTATCCGCCTACGAAAGTTATCTTCATACCCGATAAGGAGTGCCAGAAGCCGGACCTTATCGCTACCTCTAGTGATTATCTCAGGATTTGGCGAGTCTCCAATGATAATAGTCGGGTTGACATGAAGAGTCTTCTTAATAACAACCGGAACAGTGAGTTTTCCGGTCCGTTAACCTCATTTGACTGGAATGAAGCTGAGCCGAGGCGGATTGGTACGTCGAGTATTGATACTACCTGTACTATATGGGATATTGAGAGGGAGACTGTCGATACCCAGTTAATTGCTCATGATAAGGAGGTTTATGATATTGCTTGGGGTGGGGTTGGAGTTTTTGCTTCTGTTTCAGCTGATGGGTCTGTTAGGGTTTTTGATCTTCGTGATAAGGAGCACTCTACGATAATCTATGAGAGTTCTGAGCCTGATACTCCTCTTGTACGCCTTGGATGGAACAAGCAGGATCCTAGGTATATGGCCACCATAATAATGGACAGTGCAAAGGTTGTAGTTTTGGACATCCGTTTCCCGACACTGCCGGTGGTGGAACTACAGAGGCACCAGGCTAGTGTGAATGCCATTGCCTGGGCTCCTCACAGCTCTTGCCATATTTGTACTGCTGGTGACGACTCACAGGCGCTTATCTGGGATCTCTCTTCAATGGGTCAGCCAATAGAAGGTGGATTGGATCCAATTCTGGCTTATACTGCAGGTGCAGAAATCGAGCAGCTTCAGTGGTCCTCATCCCAGCCTGATTGGGTTGCCATTGCATTCTCCAACAAGCTTCAGATTCTAAGGGTGTGAATTAGCTATTCTCGCTCGCACTTCAAGCAGCTGCTCAAGTATCATCTTATTCAGTCTTCCTGCTAGCGACATTTCTCCAAGTAAAAATTTTCCTTTTTTTGGCATTTTATTCCCAAAATGAAAAACGAGGCTTATTACTGACAATAGTTAAACCTGAATAGCTTTTGCTATCTTTGCACCTAGGGCTCTATTATCATAGAAGTAACTGGAATCCACATTGTCTGTGGGATTCAGTTAGTCAGCATTATTGTGGTTGGTCTGCAACATCTGTAGCTTGTATTATGTTTATTGAAAACCGCAATTGGAGTAATCAAATCATATGTGTTTTGATGTTCCTGAGAG</gDNA_template>
            <first_frame> G  G  G  R  R  R  N  Q  K  W  E  Q  A  V  I  R  T  S  K  M  V  P  T  N  S  R  D  A  P  R  S  T  P  T  R  L  H  G  T  Y  T  L  *  I  G  V  F  A  R  I  R  S  I  V  S  P  L  L  A  C  S  S  S  T  K  T  E  L  R  L  C  S  L  M  T  L  M  V  R  F  G  P  T  R  N  S  H  L  S  T  R  I  R  L  R  K  L  S  S  Y  P  I  R  S  A  R  S  R  T  L  S  L  P  L  V  I  I  S  G  F  G  E  S  P  M  I  I  V  G  L  T  *  R  V  F  L  I  T  T  G  T  V  S  F  P  V  R  *  P  H  L  T  G  M  K  L  S  R  G  G  L  V  R  R  V  L  I  L  P  V  L  Y  G  I  L  R  G  R  L  S  I  P  S  *  L  L  M  I  R  R  F  M  I  L  L  G  V  G  L  E  F  L  L  L  F  Q  L  M  G  L  L  G  F  L  I  F  V  I  R  S  T  L  R  *  S  M  R  V  L  S  L  I  L  L  L  Y  A  L  D  G  T  S  R  I  L  G  I  W  P  P  *  *  W  T  V  Q  R  L  *  F  W  T  S  V  S  R  H  C  R  W  W  N  Y  R  G  T  R  L  V  *  M  P  L  P  G  L  L  T  A  L  A  I  F  V  L  L  V  T  T  H  R  R  L  S  G  I  S  L  Q  W  V  S  Q  *  K  V  D  W  I  Q  F  W  L  I  L  Q  V  Q  K  S  S  S  F  S  G  P  H  P  S  L  I  G  L  P  L  H  S  P  T  S  F  R  F  *  G  C  E  L  A  I  L  A  R  T  S  S  S  C  S  S  I  I  L  F  S  L  P  A  S  D  I  S  P  S  K  N  F  P  F  F  G  I  L  F  P  K  *  K  T  R  L  I  T  D  N  S  *  T  *  I  A  F  A  I  F  A  P  R  A  L  L  S  *  K  *  L  E  S  T  L  S  V  G  F  S  *  S  A  L  L  W  L  V  C  N  I  C  S  L  Y  Y  V  Y  *  K  P  Q  L  E  *  S  N  H  M  C  F  D  V  P  E   </first_frame>
            <second_frame>  A  A  E  E  E  E  I  R  N  G  S  K  Q  *  S  E  P  A  R  W  F  R  R  T  A  E  T  L  R  D  L  H  L  R  G  S  M  A  H  I  R  Y  E  L  E  C  S  Q  G  *  E  V  S  S  R  H  C  *  L  A  R  A  V  P  K  P  S  *  D  C  A  A  *  *  L  *  W  *  D  S  V  R  P  E  T  L  I  *  A  P  V  S  A  Y  E  S  Y  L  H  T  R  *  G  V  P  E  A  G  P  Y  R  Y  L  *  *  L  S  Q  D  L  A  S  L  Q  *  *  *  S  G  *  H  E  E  S  S  *  *  Q  P  E  Q  *  V  F  R  S  V  N  L  I  *  L  E  *  S  *  A  E  A  D  W  Y  V  E  Y  *  Y  Y  L  Y  Y  M  G  Y  *  E  G  D  C  R  Y  P  V  N  C  S  *  *  G  G  L  *  Y  C  L  G  W  G  W  S  F  C  F  C  F  S  *  W  V  C  *  G  F  *  S  S  *  *  G  A  L  Y  D  N  L  *  E  F  *  A  *  Y  S  S  C  T  P  W  M  E  Q  A  G  S  *  V  Y  G  H  H  N  N  G  Q  C  K  G  C  S  F  G  H  P  F  P  D  T  A  G  G  G  T  T  E  A  P  G  *  C  E  C  H  C  L  G  S  S  Q  L  L  P  Y  L  Y  C  W  *  R  L  T  G  A  Y  L  G  S  L  F  N  G  S  A  N  R  R  W  I  G  S  N  S  G  L  Y  C  R  C  R  N  R  A  A  S  V  V  L  I  P  A  *  L  G  C  H  C  I  L  Q  Q  A  S  D  S  K  G  V  N  *  L  F  S  L  A  L  Q  A  A  A  Q  V  S  S  Y  S  V  F  L  L  A  T  F  L  Q  V  K  I  F  L  F  L  A  F  Y  S  Q  N  E  K  R  G  L  L  L  T  I  V  K  P  E  *  L  L  L  S  L  H  L  G  L  Y  Y  H  R  S  N  W  N  P  H  C  L  W  D  S  V  S  Q  H  Y  C  G  W  S  A  T  S  V  A  C  I  M  F  I  E  N  R  N  W  S  N  Q  I  I  C  V  L  M  F  L  R  </second_frame>
            <third_frame>   R  R  K  K  K  K  S  E  M  G  A  S  S  D  P  N  Q  Q  D  G  S  D  E  Q  Q  R  R  S  E  I  Y  T  Y  E  A  P  W  H  I  Y  A  M  N  W  S  V  R  K  D  K  K  Y  R  L  A  I  A  S  L  L  E  Q  Y  Q  N  R  V  E  I  V  Q  L  D  D  S  N  G  E  I  R  S  D  P  K  L  S  F  E  H  P  Y  P  P  T  K  V  I  F  I  P  D  K  E  C  Q  K  P  D  L  I  A  T  S  S  D  Y  L  R  I  W  R  V  S  N  D  N  S  R  V  D  M  K  S  L  L  N  N  N  R  N  S  E  F  S  G  P  L  T  S  F  D  W  N  E  A  E  P  R  R  I  G  T  S  S  I  D  T  T  C  T  I  W  D  I  E  R  E  T  V  D  T  Q  L  I  A  H  D  K  E  V  Y  D  I  A  W  G  G  V  G  V  F  A  S  V  S  A  D  G  S  V  R  V  F  D  L  R  D  K  E  H  S  T  I  I  Y  E  S  S  E  P  D  T  P  L  V  R  L  G  W  N  K  Q  D  P  R  Y  M  A  T  I  I  M  D  S  A  K  V  V  V  L  D  I  R  F  P  T  L  P  V  V  E  L  Q  R  H  Q  A  S  V  N  A  I  A  W  A  P  H  S  S  C  H  I  C  T  A  G  D  D  S  Q  A  L  I  W  D  L  S  S  M  G  Q  P  I  E  G  G  L  D  P  I  L  A  Y  T  A  G  A  E  I  E  Q  L  Q  W  S  S  S  Q  P  D  W  V  A  I  A  F  S  N  K  L  Q  I  L  R  V  *  I  S  Y  S  R  S  H  F  K  Q  L  L  K  Y  H  L  I  Q  S  S  C  *  R  H  F  S  K  *  K  F  S  F  F  W  H  F  I  P  K  M  K  N  E  A  Y  Y  *  Q  *  L  N  L  N  S  F  C  Y  L  C  T  *  G  S  I  I  I  E  V  T  G  I  H  I  V  C  G  I  Q  L  V  S  I  I  V  V  G  L  Q  H  L  *  L  V  L  C  L  L  K  T  A  I  G  V  I  K  S  Y  V  F  *  C  S  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84641" stop="85708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRKKKKSEMGASSDPNQQDGSDEQQRRSEIYTYEAPWHIYAMNWSVRKDKKYRLAIASLLEQYQNRVEIVQLDDSNGEIRSDPKLSFEHPYPPTKVIFIPDKECQKPDLIATSSDYLRIWRVSNDNSRVDMKSLLNNNRNSEFSGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIERETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPIEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSNKLQILRV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="87221" PGL_stop="87585"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87221" e_stop="87585"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87221" e_stop="87585" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87221" stop="87585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGATCCTTCATGATCTAATTTTTAAGATTCGGGTTATGGATTTATGTATGGATACGATTGCGGGGGTTCACCTAAAAATGATTAGAATGTCTAAAATAAGTTATAAAACCTAAATTATGAGATATTATGAAGAGAATCTCATATTGAGATTAAAGGAAAAGGAGTGACAAAGAAATTTATATATAAAAGGTATTCTATTTTCTTCAATTTCAACTTAGATTTTGCATTGATTATTGAAATTATTAAAACTATCCTGACTTTCCCCGTCGATTTTGCTCAAAGCACCCTAAATCGGTTGACCAAATTGGACACAGATCCCACACCCACACTCATGTCGTGTTGACATGGGTGCGGCACCATAAGT</gDNA_template>
            <first_frame> W  I  L  H  D  L  I  F  K  I  R  V  M  D  L  C  M  D  T  I  A  G  V  H  L  K  M  I  R  M  S  K  I  S  Y  K  T  *  I  M  R  Y  Y  E  E  N  L  I  L  R  L  K  E  K  E  *  Q  R  N  L  Y  I  K  G  I  L  F  S  S  I  S  T  *  I  L  H  *  L  L  K  L  L  K  L  S  *  L  S  P  S  I  L  L  K  A  P  *  I  G  *  P  N  W  T  Q  I  P  H  P  H  S  C  R  V  D  M  G  A  A  P  *   </first_frame>
            <second_frame>  G  S  F  M  I  *  F  L  R  F  G  L  W  I  Y  V  W  I  R  L  R  G  F  T  *  K  *  L  E  C  L  K  *  V  I  K  P  K  L  *  D  I  M  K  R  I  S  Y  *  D  *  R  K  R  S  D  K  E  I  Y  I  *  K  V  F  Y  F  L  Q  F  Q  L  R  F  C  I  D  Y  *  N  Y  *  N  Y  P  D  F  P  R  R  F  C  S  K  H  P  K  S  V  D  Q  I  G  H  R  S  H  T  H  T  H  V  V  L  T  W  V  R  H  H  K  </second_frame>
            <third_frame>   D  P  S  *  S  N  F  *  D  S  G  Y  G  F  M  Y  G  Y  D  C  G  G  S  P  K  N  D  *  N  V  *  N  K  L  *  N  L  N  Y  E  I  L  *  R  E  S  H  I  E  I  K  G  K  G  V  T  K  K  F  I  Y  K  R  Y  S  I  F  F  N  F  N  L  D  F  A  L  I  I  E  I  I  K  T  I  L  T  F  P  V  D  F  A  Q  S  T  L  N  R  L  T  K  L  D  T  D  P  T  P  T  L  M  S  C  *  H  G  C  G  T  I  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0106F07.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87352" stop="87564"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RESHIEIKGKGVTKKFIYKRYSIFFNFNLDFALIIEIIKTILTFPVDFAQSTLNRLTKLDTDPTPTLMSC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 40 chains have been computed
$ 
$ memory statistics:
$ 61152 bytes spliced alignments in total
$ 30 spliced alignments have been stored
$ 2038 bytes was the average size of a spliced alignment
$ 36456 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1458 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:25:25
-->
