<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:28:23"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="3858" stop="2805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3558" g_stop="3140" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3558" e_stop="3140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAATTAAGGAATAAAAG-AAAAAACAAAATAAAAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAAAATCATATATACCCCTAAATA--ATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGATATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGACATATATGAGCCACTTTTGTAACGAGGGGTATATCAGCTTCAAATGACAAAATTGAGGG</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E200497" ref_strand="+" ref_description="SGN-E200497 [cLEB-8-L10]">
      <seq>gcacgagccacaacaactctttatactcaacgttcaatcttcatagcactctatttacatgaggttggagttggtggtcattcaattgaataatggcgcttgcccctcattcaaacattctgtgcaatcatgaggccatcaaatgtcaagttggatcaaggcttcagagtcatacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgcagaaatcttctagaatatgttgtggtttggattctagaagtctgcaactatcatcacgggggaaacaaaatctttcttctgcacatagaattaaccagaatgtacctaagggaaatacaatatggaaatttccagaagatgtagctttgatggtcttgaagaaatggggccaattggccaaaacagcaattgtaactatatttattttgtcagttgcttcaaaggctgatgccgttgatgctctcaaaacttgtacttgcttactgaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4569" stop="6428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4869" g_stop="4931" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5835" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="371" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5967" g_stop="6128" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="533" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E200497" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200497" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4869" e_stop="4931"/>
          <exon e_start="5528" e_stop="5835"/>
          <exon e_start="5967" e_stop="6128"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGTGAGTTTGATATTATTTTGTTCTGTTGCTTCTCGTTTACTACTTTCCGAAGGAATGTGGGGGTCTAGCTCTGTCCTCTGCATCCTTTTCATCCTCTTCTTTCTCTTTGCTGACAGAAGTCCTCTATATAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAG</genome_strand>
        <mrna_strand>GCACGAGCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG...................................................................................................................................GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E323480" ref_strand="+" ref_description="SGN-E323480 [cTOC-7-I5]">
      <seq>cacaacaactctttatactcaacgttcaatcttcatagcactctatttacatgaggttggagttggtggtcattcaattgaataatggcgcttgcccctcattcaaacattctgtgcaatcatgaggccatcaaatgtcaagttggatcaaggcttcagagtcatacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgcagaaatcttctagaatatgttgtggtttggattctagaagtctgcaactatcatcacgggggaaacaaaatctttcttctgcacatagaattaaccagaatgtacctaagggaaatacaatatggaaatttccagaagatgtagctttgatggtcttgaagaaatggggccaattggccaaaacagcaattgtaactatatttattttgtcagttgcttcaaaggctgatgccgttgatgctctcaaaacttgtacttgcttactgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4577" stop="6424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4877" g_stop="4931" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5835" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="363" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5967" g_stop="6124" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="521" r_length="158" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E323480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4877" e_stop="4931"/>
          <exon e_start="5528" e_stop="5835"/>
          <exon e_start="5967" e_stop="6124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGTGAGTTTGATATTATTTTGTTCTGTTGCTTCTCGTTTACTACTTTCCGAAGGAATGTGGGGGTCTAGCTCTGTCCTCTGCATCCTTTTCATCCTCTTCTTTCTCTTTGCTGACAGAAGTCCTCTATATAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAA</genome_strand>
        <mrna_strand>CACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG...................................................................................................................................GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E340670" ref_strand="+" ref_description="SGN-E340670 [cTOF-1-J5]">
      <seq>acaacaactctttatactcaacgttcaatcttcatagcactctatttacatgaggttggagttggtggtcattcaattgaataatggcgcttgcccctcattcaaacattctgtgcaatcatgaggccatcaaatgtcaagttggatcaaggcttcagagtcatacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgcagaaatcttctagaatatgttgtggtttggattctagaagtctgcaactatcatcacgggggaaacaaaatctttcttctgcacatagaattaaccagaatgtacctaagggaaatacaatatggaaatttccagaagatgtagctttgatggtcttgaagaaatggggccaattggccaaaacagcaattgtaactatatttattttgtcagttgcttcaaaggctgatgccgttgatgctctcaaaacttgtacttgcttactgaaagagtgcaggtaatttgcagatgttactaaagtatgccggatagagcttgcgaagtgcatctcanaccctgcatgtgcagctaatgttgcctgtctccaaacatgcaacaatagacctgatgaaacggaatgtcagataaaatgtggtgatttgtttgaaaacagtgttgtagacgagttcaatgagtgtgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4578" stop="7468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4878" g_stop="4931" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5835" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="362" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5967" g_stop="6163" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="559" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6164" i_stop="6931" i_length="768">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6932" g_stop="7028" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="656" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7110" g_stop="7168" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="715" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E340670" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4878" e_stop="4931"/>
          <exon e_start="5528" e_stop="5835"/>
          <exon e_start="5967" e_stop="6163"/>
          <exon e_start="6932" e_stop="7028"/>
          <exon e_start="7110" e_stop="7168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGTGAGTTTGATATTATTTTGTTCTGTTGCTTCTCGTTTACTACTTTCCGAAGGAATGTGGGGGTCTAGCTCTGTCCTCTGCATCCTTTTCATCCTCTTCTTTCTCTTTGCTGACAGAAGTCCTCTATATAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCGGTATACTTCCTTCTACCGAGCTGCCAATATATTTTGTTTTGCTACCCTTCTTATGTTTCTTTCAAGAGCTTTGAGCTTGTTTACTTCTATTACATATAAAAATACACAAGGAATGTGAAATTGGTTCTTGTTTGTACACTGTGGATTGTCGTCCTGAATTAATAATTGAGTGCAGTGGTAAGGATGTCAAATTCAGTTTTCACGGACATAGACTGTCTCTAGCTTTTTATGATCAACTGTCCATAAGTTCTCGATTCTAGTCGTAATTATCGATAAAATCAAGTTTTAAGCATGTTCAAAGTGAAACATAACCCCAACCGTAATGCTTTTCCATCTATTCCTTTCCGATTTTGAGACTGTTAAGACTTTCTGTGTTCTAATTAGGCCATGAGAATAGCAGTATGAATTTGACTTATTTGGAGCAAGTTTTTTTAGACCTTTACGGTGGTAAAAGCAACTGATACTGTTGCTGTGCTAGGGATGCAGGAAAGTTTTTACTATTATTCCAATTTCCCTGAATCTCAAAAGATATCTTTTTGTCTCGTGCCACAATTTGATGAACTTGTAAAGATATAGCCACACAAATGTCTTAGGTTTATTTTAGACCACAAAATTCACAAGTCTTTTTTTCTTTCTTAAAGTTTTTGCTAAGTCAAACTGTCCAACAAAAATTAGGACGGAGGGAGTAGTATTGATGAGTTTCAACCTCCATCCCTAACATGCATGTCTGATACTCTTAGGTGACTTATTAAAGTATTATGCTTTCAGGATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAGGTGTCTACAAACATCTTATTAAAACTGAATATTGATTTGATCACATTTATGGAATATTAATATGTTGGAATATGGGTGCAGATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGT</genome_strand>
        <mrna_strand>ACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG...................................................................................................................................GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCTTGCGAAGTGCATCTCANACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG.................................................................................ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E725851" ref_strand="+" ref_description="SGN-E725851 [LA08CA09]">
      <seq>caacaactctttatactcaacgttcaatcttcatagcactctatttacatgaggttggagttggtggtcattcaattgaataatggcgcttgcccctcattcaaacattctgtgcaatcatgaggccatcaaatgtcaagttggatcaaggcttcagagtcatacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgcagaaatcttctagaatatgttgtggtttggattctagaagtctgcaactatcatcacgggggaaacaaaatctttcttctgcacatagaattaaccagaatgtacctaagggaaatacaatatggaaatttccagaagatgtagctttgatggtcttgaagaaatggggccaattggccaaaacagcaattgtaactatatttattttgtcagttgcttcaaaggctgatgccgttgatgctctcaaaacttgtacttgcttactgaaagagtgcaggatagagcttgcgaagtgcatctcaaaccctgcatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4579" stop="7269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4879" g_stop="4931" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5835" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="361" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5967" g_stop="6133" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="528" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6134" i_stop="6931" i_length="798">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6932" g_stop="6969" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="566" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E725851" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E725851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4879" e_stop="4931"/>
          <exon e_start="5528" e_stop="5835"/>
          <exon e_start="5967" e_stop="6133"/>
          <exon e_start="6932" e_stop="6969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGTGAGTTTGATATTATTTTGTTCTGTTGCTTCTCGTTTACTACTTTCCGAAGGAATGTGGGGGTCTAGCTCTGTCCTCTGCATCCTTTTCATCCTCTTCTTTCTCTTTGCTGACAGAAGTCCTCTATATAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCGGTATACTTCCTTCTACCGAGCTGCCAATATATTTTGTTTTGCTACCCTTCTTATGTTTCTTTCAAGAGCTTTGAGCTTGTTTACTTCTATTACATATAAAAATACACAAGGAATGTGAAATTGGTTCTTGTTTGTACACTGTGGATTGTCGTCCTGAATTAATAATTGAGTGCAGTGGTAAGGATGTCAAATTCAGTTTTCACGGACATAGACTGTCTCTAGCTTTTTATGATCAACTGTCCATAAGTTCTCGATTCTAGTCGTAATTATCGATAAAATCAAGTTTTAAGCATGTTCAAAGTGAAACATAACCCCAACCGTAATGCTTTTCCATCTATTCCTTTCCGATTTTGAGACTGTTAAGACTTTCTGTGTTCTAATTAGGCCATGAGAATAGCAGTATGAATTTGACTTATTTGGAGCAAGTTTTTTTAGACCTTTACGGTGGTAAAAGCAACTGATACTGTTGCTGTGCTAGGGATGCAGGAAAGTTTTTACTATTATTCCAATTTCCCTGAATCTCAAAAGATATCTTTTTGTCTCGTGCCACAATTTGATGAACTTGTAAAGATATAGCCACACAAATGTCTTAGGTTTATTTTAGACCACAAAATTCACAAGTCTTTTTTTCTTTCTTAAAGTTTTTGCTAAGTCAAACTGTCCAACAAAAATTAGGACGGAGGGAGTAGTATTGATGAGTTTCAACCTCCATCCCTAACATGCATGTCTGATACTCTTAGGTGACTTATTAAAGTATTATGCTTTCAGGATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTG</genome_strand>
        <mrna_strand>CAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG...................................................................................................................................GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E280688" ref_strand="-" ref_description="SGN-E280688 [cLEL-6-K2](-)">
      <seq>gcacgagcaacgttcaatcttcatagcactctatttacatgaggttggagttggtgggcattcaattgaataatggcgcttctccctcattcaaacattctgtgcaatcatgaggccatcaaatgtcaagttggatcaaggcttcagagtcatacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4596" stop="6025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4889" g_stop="4931" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="0.860"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="0.86"/>
            <acceptor a_prob="0.712" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5725" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="241" r_length="198" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E280688" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280688" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="4889" e_stop="4931"/>
          <exon e_start="5528" e_stop="5725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGC</genome_strand>
        <mrna_strand>GCACGAGCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGGCATTCAATTGAATAATGGCGCTTCTCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364721" ref_strand="+" ref_description="SGN-E364721 [cLPT-4-A14]">
      <seq>tcaacgttcaatcttcatagcactctatttacatgaggttggagttggtggtcattcaattgaataatggcgcttgcccctcattcaaacattctgtgcaatcatgaagccatcaaatgtcaagttggatcaaggctgcagagtcagacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgcagaaatcttctagaatatgttgtggtttggattctagaagtctgcaactatcatcacgggggaaacaaaatctttcttctgcacatagaattaaccagaatgtacctaagggaaatacaatatggaaatttccagaagatgtagctttgatggtcttgaagaaatggggccaattggccaaaacagcaattgtaactatatttattttgtcagttgcttcaaaggctgatgccgttgatgctctcaaaacttgtacttgcttactgaaagagtgcaggatagagcttgcgaagtgcatctcaaaccctgcatgtgcagctaatgttgcctgtctccaaacatgcaacaatagacctgatgaaacggaatgtcagataaaatgtggtgatttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4595" stop="7431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4895" g_stop="4931" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5835" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="345" r_length="308" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5967" g_stop="6133" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="512" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6134" i_stop="6931" i_length="798">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6932" g_stop="7028" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="609" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7110" g_stop="7131" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="631" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E364721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4895" e_stop="4931"/>
          <exon e_start="5528" e_stop="5835"/>
          <exon e_start="5967" e_stop="6133"/>
          <exon e_start="6932" e_stop="7028"/>
          <exon e_start="7110" e_stop="7131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGTGAGTTTGATATTATTTTGTTCTGTTGCTTCTCGTTTACTACTTTCCGAAGGAATGTGGGGGTCTAGCTCTGTCCTCTGCATCCTTTTCATCCTCTTCTTTCTCTTTGCTGACAGAAGTCCTCTATATAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCGGTATACTTCCTTCTACCGAGCTGCCAATATATTTTGTTTTGCTACCCTTCTTATGTTTCTTTCAAGAGCTTTGAGCTTGTTTACTTCTATTACATATAAAAATACACAAGGAATGTGAAATTGGTTCTTGTTTGTACACTGTGGATTGTCGTCCTGAATTAATAATTGAGTGCAGTGGTAAGGATGTCAAATTCAGTTTTCACGGACATAGACTGTCTCTAGCTTTTTATGATCAACTGTCCATAAGTTCTCGATTCTAGTCGTAATTATCGATAAAATCAAGTTTTAAGCATGTTCAAAGTGAAACATAACCCCAACCGTAATGCTTTTCCATCTATTCCTTTCCGATTTTGAGACTGTTAAGACTTTCTGTGTTCTAATTAGGCCATGAGAATAGCAGTATGAATTTGACTTATTTGGAGCAAGTTTTTTTAGACCTTTACGGTGGTAAAAGCAACTGATACTGTTGCTGTGCTAGGGATGCAGGAAAGTTTTTACTATTATTCCAATTTCCCTGAATCTCAAAAGATATCTTTTTGTCTCGTGCCACAATTTGATGAACTTGTAAAGATATAGCCACACAAATGTCTTAGGTTTATTTTAGACCACAAAATTCACAAGTCTTTTTTTCTTTCTTAAAGTTTTTGCTAAGTCAAACTGTCCAACAAAAATTAGGACGGAGGGAGTAGTATTGATGAGTTTCAACCTCCATCCCTAACATGCATGTCTGATACTCTTAGGTGACTTATTAAAGTATTATGCTTTCAGGATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAGGTGTCTACAAACATCTTATTAAAACTGAATATTGATTTGATCACATTTATGGAATATTAATATGTTGGAATATGGGTGCAGATAAAATGTGGTGATTTGTTTG</genome_strand>
        <mrna_strand>TCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAAGCCATCAAATGTCAAGTTGGATCAAGGCTGCAGAGTCAGACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG...................................................................................................................................GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG.................................................................................ATAAAATGTGGTGATTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E747121" ref_strand="+" ref_description="SGN-E747121 [GI|84181184]">
      <seq>cttgacgagactgaatgtcagataaaatgtggtgatttgtttgaaaacagtgttgtagacgagttcaatgagtgtgcagtctcccggaagaaatgtgtacctcgtaaatctgatgttggtgactttcctgtgcctgatcccagtgttctcgtccaaaagtttgacatgaatgattttattggaaaatggtacatcactcgcggtttgaatcccacatttgatgtttttgattgtcaattgcatgagttccatacagaaggaaacaaacttgtgggaagtctgacttggagaatagggacacctgatggaggatttttcactcgatccgcagtgcaaaaattcgtgcaagatccaaagtatcccgggatactctacaatcatgataatgagtatcttcactaccaagatgactggtacattttgtcatccaaagttgaaaacagtccagatgattacatatttgtgtactataagggcagaaatgatgcatgggatggatatggtggttctgtactttatactagaagctccgttttgcctgaaacgattatacctgagttgcaaattgcagctcaaaaagttggtcgtgatttcaacactttcataaaaacagacaatacttgtggccctgagccaccccttgttgaacggttagagaagaaagtggaagaaggagagcggacaatcataaaagaagtcgaggaaatagaagaagaagtcgagaaggtgaaggaaaaagaagtcagcttattcagtagactgttcgaaggtttcaaagagctgcaacaagatgaagaaaactttataagagagctcagcaaagaagaaatggatattttggatggacttaaaatggaagcaactgaagtagaaaaactctttggaaatgcattaccaataaggaaattaaggtaaatattgttatgagagttatattagaaaccatccacatacagaatgtatagattgtatttaatttactttttatctttttgtctggaatagattgcttatatatcatgtaatgctccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="6798" stop="8510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7008" g_stop="7028" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7110" g_stop="7501" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="413" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7502" i_stop="7582" i_length="81">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7583" g_stop="8202" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="1033" r_length="620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1034" polyA_stop="1052"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E747121" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1033</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E747121" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7008" e_stop="7028"/>
          <exon e_start="7110" e_stop="7501"/>
          <exon e_start="7583" e_stop="8202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGAAACGGAATGTCAGGTGTCTACAAACATCTTATTAAAACTGAATATTGATTTGATCACATTTATGGAATATTAATATGTTGGAATATGGGTGCAGATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTGGTATCTCACTTCCTACAGTCTCCATATTGTTTGTACTTGCATTGTGATTCACCTAAACACGTTAATTGATTTTCTCTGCAGGTATATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</genome_strand>
        <mrna_strand>CTTGACGAGACTGAATGTCAG.................................................................................ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTG.................................................................................GTACATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E745927" ref_strand="+" ref_description="SGN-E745927 [GI|47105475]">
      <seq>gactctttgaagagtaaagtgtagtctacaactgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttctataccagtgttcctctttcatacatggaatatatacgaaaccttgcagttgaaaaacttgacttacaatatgtggaggagaaggaattatactacgtcaagctttcagacaacatgcgcgctgattcaactgtcacctgcaaatgtacggtggtcaaggatcaggagaaaattcagctccataagattgagctgaaccaagtacgcaacatggttgcagacatgagctgtcctggcaaaagcttagacctgaggttgatgttaaacaccaagaaaatcatgacgggtttatctgatgaggagatcaatgaaattaaaagtcttatcggttcagctgtgttggactctgaagttaagggtgggctgagatggccctttggcgaggattcttcagggagtcgatatgctgttaccggtgtctggcacacaactgcaaaatcgtatgggaattcgtcaattaggcttaagcttagacatgcagatcgatatgatttcagatcttcaactggtgaggttgcacaggaagttaacctgaaaatgtctgggattttatcccaattgcaggaggaaacgattgacgaaaacctggtgcttaaaatgctggaagacaacttgaagttaatctgggatcactgtttggatgatggttcttcaagctgatgaccatatttcgcggtccttcactctctttgcaaaatatctgcagaaactcacaagctatggtcgtttggtgaagaaagttaccttttgtagtttgcagtggtggaatgtatagatggataactgaattgttaaactcaaaatgttgaatgctgtttgcagtatattgttttgcgtatggaatgaaatgaaccaaggcctctgatggtagcggcatcagtaaaggaatagttttgtttttgtaatggatcgaacttcttagttaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11815" stop="8043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11516" g_stop="11165" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="521" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="702" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10371" g_stop="10288" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="703" r_stop="786" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10287" i_stop="10094" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10093" g_stop="9986" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="894" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9985" i_stop="9173" i_length="813">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9172" g_stop="8903" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="895" r_stop="1164" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8902" i_stop="8705" i_length="198">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8704" g_stop="8345" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1165" r_stop="1524" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1525" polyA_stop="1543"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E745927" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1524</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11516" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10450"/>
          <exon e_start="10371" e_stop="10288"/>
          <exon e_start="10093" e_stop="9986"/>
          <exon e_start="9172" e_stop="8903"/>
          <exon e_start="8704" e_stop="8345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAGGTAATATTTTCATGTTTCTAACAAGTTTCTTTCTCTTTATGTGTTGCTTCTTTTAGTAGTATCCCTTGTGCTTTGTAGCTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAATTCAGCTCCATAAGGTTACTTCTCCATTCCCTGGTTCTTAATGAACTTGCTGTAAGATGCCCAATTAACTGTTTATTTTCCAACTAGAAAAACAACATTAATTGTTGTCATGAACATATTTACCTCCTCTTACCTATCTTTTGCATGCTTTACTTCTTGCAGTTTGTCATTCCTTATCAATCTTCTGACGCTACACTTTTTCTTTTAGATTGAGCTGAACCAAGTACGCAACATGGTTGCAGACATGAGCTGTCCTGGCAAAAGCTTAGACCTGAGGTTGATGTTAAACACCAAGAAAATCATGACGGGTTTATCTGTAAGTTACTTCATTGAGGATCAAATATCTTGAAAGTCATAGGTCGTATACTCATACTTAGAAGTTTCACCCAATATTTGATATCTTCTGAACTGGAGACATGTTTATTCAGTTACTCTTGGTTCAAATTTCTTGTTTTTTCATGTTTCGTCGATTTGGGAGAGGGTTTGATTTTTGTGAACAGCAAAATGAATAGCCTATTGGGTTGACCAGTAGGGTTTAAAATGCTCAAATACTGTGCGTTATTGGAGATCTCTGGTAACTGGATTGAGCTAGATACAAATCATTTCTACGATGAAATACAAAGGAGGGTAAGTAGAAGAGAGAAAAAAAGGAAAAAGGATACAGAGGCAAAAAGTAGAAATGAAGATATTCTTCACATGCATTCAGTGTTAAGGTGGTTACTTAATGAATTTGATTTGTTTTGGGATCTCTAACTACCTACACTTAATAAGATTTAAGGGCTTCGAAAACCCAACCAAATATAAAGTTACACCCCAAGTAAGCAGACTTTCAAGTCTAATGTATTTAAATTGTCTAGTCATATAGTGTACCAGGGATGATACTTTTGATATTTACATTGGTAAGTACAGGTATTAACAAAACCCATAGATTTTAGAGTACCGATGAAATTTGTCTGCACTTTGGATGTACATATTTTACCTCCATTCCAGCGAAGAAGAACCTTTTTCTGTGTGAATTATTTTATTTGCACTTCAATTTCCATCTTCTCATCATGACTTCTGCACTCTCAACTGAAAGGACACCAGTAGTGTTTGTGTTCTTATTGTATCACTCTCTGCTTTTTCCCAGGATGAGGAGATCAATGAAATTAAAAGTCTTATCGGTTCAGCTGTGTTGGACTCTGAAGTTAAGGGTGGGCTGAGATGGCCCTTTGGCGAGGATTCTTCAGGGAGTCGATATGCTGTTACCGGTGTCTGGCACACAACTGCAAAATCGTATGGGAATTCGTCAATTAGGCTTAAGCTTAGACATGCAGATCGATATGATTTCAGATCTTCAACTGGTGAGGTTGCACAGGAAGTTAACCTGAAAATGTCTGGGATTTTATCCCAATTGCAGGTAGATTTTCTTCTAATGAGCAATTATGTCTATTTCTATTGGTAATACATTTGGGCAAAACATCATCCAGTTCAGCTGGAGAAACAAAATTCAATGACTGATTCCAATCCAGTTGATAAGCCTTTCTGTTTCTTTTTCTACTTGACCCCTTCACTACTGAAATAATTAATTTAATACATTTTCTTACCTAAAATGCAGGAGGAAACGATTGACGAAAACCTGGTGCTTAAAATGCTGGAAGACAACTTGAAGTTAATCTGGGATCACTGTTTGGATGATGGTTCTTCAAGCTGATGACCATATTTCGCGGTCCTTCACTCTCTTTGCAAAATATCTGCAGAAACTCACAAGCTATGGTCGTTTGGTGAAGAAAGTTACCTTTTGTAGTTTGCAGTGGTGGAATGTATAGATGGATAACTGAATTGTTAAACTCAAAATGTTGAATGCTGTTTGCAGTATATTGTTTTGCGTATGGAATGAAATGAACCAAGGCCTCTGATGGTAGCGGCATCAGTAAAGGAATAGTTTTGTTTTTGTAATGGATCGAACTTCTTAGTT</genome_strand>
        <mrna_strand>GACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAG..............................................................................CTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAATTCAGCTCCATAAG..................................................................................................................................................................................................ATTGAGCTGAACCAAGTACGCAACATGGTTGCAGACATGAGCTGTCCTGGCAAAAGCTTAGACCTGAGGTTGATGTTAAACACCAAGAAAATCATGACGGGTTTATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGAGATCAATGAAATTAAAAGTCTTATCGGTTCAGCTGTGTTGGACTCTGAAGTTAAGGGTGGGCTGAGATGGCCCTTTGGCGAGGATTCTTCAGGGAGTCGATATGCTGTTACCGGTGTCTGGCACACAACTGCAAAATCGTATGGGAATTCGTCAATTAGGCTTAAGCTTAGACATGCAGATCGATATGATTTCAGATCTTCAACTGGTGAGGTTGCACAGGAAGTTAACCTGAAAATGTCTGGGATTTTATCCCAATTGCAG......................................................................................................................................................................................................GAGGAAACGATTGACGAAAACCTGGTGCTTAAAATGCTGGAAGACAACTTGAAGTTAATCTGGGATCACTGTTTGGATGATGGTTCTTCAAGCTGATGACCATATTTCGCGGTCCTTCACTCTCTTTGCAAAATATCTGCAGAAACTCACAAGCTATGGTCGTTTGGTGAAGAAAGTTACCTTTTGTAGTTTGCAGTGGTGGAATGTATAGATGGATAACTGAATTGTTAAACTCAAAATGTTGAATGCTGTTTGCAGTATATTGTTTTGCGTATGGAATGAAATGAACCAAGGCCTCTGATGGTAGCGGCATCAGTAAAGGAATAGTTTTGTTTTTGTAATGGATCGAACTTCTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320192" ref_strand="+" ref_description="SGN-E320192 [cTOB-21-I15]">
      <seq>tgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttctataccagtgttcctctttcatacatggaatatatacgaaaccttgcagttgaaaaacttgacttacaatatgtggaagagaaggaattatactacgtcaagctttcagacaacatgcgcgctgattcaactgtcacctgcaaatgtacggtggtcaaggatcaggagaaaatcagctccatagattgagctgaacaagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11784" stop="9982"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11484" g_stop="11165" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="489" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="670" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10371" g_stop="10288" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="752" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10287" i_stop="10094" i_length="194">
            <donor d_prob="0.958" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10093" g_stop="10076" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="769" r_length="17" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E320192" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11484" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10450"/>
          <exon e_start="10371" e_stop="10288"/>
          <exon e_start="10093" e_stop="10076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAGGTAATATTTTCATGTTTCTAACAAGTTTCTTTCTCTTTATGTGTTGCTTCTTTTAGTAGTATCCCTTGTGCTTTGTAGCTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAATTCAGCTCCATAAGGTTACTTCTCCATTCCCTGGTTCTTAATGAACTTGCTGTAAGATGCCCAATTAACTGTTTATTTTCCAACTAGAAAAACAACATTAATTGTTGTCATGAACATATTTACCTCCTCTTACCTATCTTTTGCATGCTTTACTTCTTGCAGTTTGTCATTCCTTATCAATCTTCTGACGCTACACTTTTTCTTTTAGATTGAGCTGAACCAAGTA</genome_strand>
        <mrna_strand>TGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAAGAGAAGGAATTATACTACGTCAAG..............................................................................CTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAA-TCAGCTCCAT-AG..................................................................................................................................................................................................ATTGAGCTGAA-CAAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E345553" ref_strand="+" ref_description="SGN-E345553 [cTOF-18-P13]">
      <seq>tacaactgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttcttacccagtgttcctctttcatacatggaatantatacgaaaccttgcagttgaaaaacttgacttacaatatgtggaggagaaggaattatactacgtcaagctttcagacacatgcgcgctgattcaactgtcacctgcaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11790" stop="10028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11490" g_stop="11165" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="495" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="677" r_length="182" r_score="0.972"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10371" g_stop="10328" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="678" r_stop="720" r_length="43" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E345553" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345553" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11490" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10450"/>
          <exon e_start="10371" e_stop="10328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATA-TATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAGGTAATATTTTCATGTTTCTAACAAGTTTCTTTCTCTTTATGTGTTGCTTCTTTTAGTAGTATCCCTTGTGCTTTGTAGCTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATG</genome_strand>
        <mrna_strand>TACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTTACCCAGTGTTCCTCTTTCATACATGGAATANTATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAG..............................................................................CTTTCAGAC-ACATGCGCGCTGATTCAACTGTCACCTGCAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343849" ref_strand="+" ref_description="SGN-E343849 [cTOF-12-O10]">
      <seq>acaactgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttctataccagtgttcctctttcatacatggaatatatacgaaaccttgcagttgaaaaacttgacttacaatatgtggaggagaaggaattatactacgtcaagctttcagacacatgcgcgctgattcaactgtcacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11789" stop="10034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11489" g_stop="11165" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="494" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="675" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10371" g_stop="10334" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="712" r_length="37" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E343849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11489" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10450"/>
          <exon e_start="10371" e_stop="10334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAGGTAATATTTTCATGTTTCTAACAAGTTTCTTTCTCTTTATGTGTTGCTTCTTTTAGTAGTATCCCTTGTGCTTTGTAGCTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTG</genome_strand>
        <mrna_strand>ACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAG..............................................................................CTTTCAGAC-ACATGCGCGCTGATTCAACTGTCACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E347092" ref_strand="+" ref_description="SGN-E347092 [cTOF-25-H22]">
      <seq>acaactgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttctataccagtgttcctctttcatacatggaatatatacgaaaccttgcagttgaaaaacttgacttacaatatgtggaggagaatgaattatactacgtcaagctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11789" stop="10148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11489" g_stop="11165" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="494" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="495" r_stop="675" r_length="181" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10371" g_stop="10367" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="676" r_stop="680" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E347092" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11489" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10450"/>
          <exon e_start="10371" e_stop="10367"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAGGTAATATTTTCATGTTTCTAACAAGTTTCTTTCTCTTTATGTGTTGCTTCTTTTAGTAGTATCCCTTGTGCTTTGTAGCTTTC</genome_strand>
        <mrna_strand>ACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAATGAATTATACTACGTCAAG..............................................................................CTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E320311" ref_strand="+" ref_description="SGN-E320311 [cTOB-21-J16]">
      <seq>tgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttctataccagtgttcctctttcatacatggaatatatacgaaaccttgcagttgaaaaacttgacttacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11784" stop="10183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11484" g_stop="11165" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="489" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10483" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="637" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E320311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11484" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAA</genome_strand>
        <mrna_strand>TGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318124" ref_strand="+" ref_description="SGN-E318124 [cTOA-29-D12]">
      <seq>taaagtgtagtctacaactgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttctataccagtgttcctctttcatacatggaatatatacgaaaccttgcagttgaaaaacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11802" stop="10189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11502" g_stop="11165" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="507" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10489" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="649" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E318124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11502" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10489"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGAC</genome_strand>
        <mrna_strand>TAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E357251" ref_strand="+" ref_description="SGN-E357251 [cLHT-17-H14]">
      <seq>tacaactgaacagtttctgtgagtgtagtctacaactgaacagtgtctctgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaaacctgaatttgaagagaaaggaaaactttcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcgtctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagtattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11790" stop="10252"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11490" g_stop="11165" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="495" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10552" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="574" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E357251" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11490" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTC</genome_strand>
        <mrna_strand>TACAACTGAACAGTTTCTGTGAGTGTAGTCTACAACTGAACAGTGTCTCTGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAACCTGAATTTGAAGAGAAAGGAAAACTTTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCGTCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGTATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245238" ref_strand="+" ref_description="SGN-E245238 [cLEF-44-F9]">
      <seq>ctgaacagtctctctgagtgtagtctacaactgaacagtgtgtccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgtcggaaccaactcccgtaccggaatcagcgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcaattcggaaatggatccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttactttagtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagatgctcgttttggaagaattctctctcatgggatatctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11785" stop="10275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11485" g_stop="11165" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="321" r_length="321" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="490" r_length="169" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10575" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="546" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E245238" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11485" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCT</genome_strand>
        <mrna_strand>CTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTGTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGTCGGAACCAACTCCCGTACCGGAATCAGCGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAATTCGGAAATGGATCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTAGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGATGCTCGTTTTGGAAGAATTCTCTCTCATGG................................................................................................................................................................................................................................................................GATATCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E318714" ref_strand="+" ref_description="SGN-E318714 [cTOB-9-H21]">
      <seq>tacaactgaacagtctctctgagtgtagtctacaactgaacagcgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcggcggaaccaactccggtaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatgcatcaaaaatctaacgaaaatcctcttcgattggtgctaatgcaaggttgcaatggaagaacaaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11790" stop="10649"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11490" g_stop="11165" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.908" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10949" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="433" r_length="107" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E318714" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11490" e_stop="11165"/>
          <exon e_start="11055" e_stop="10949"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCT</genome_strand>
        <mrna_strand>TACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGCGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGGCGGAACCAACTCCGGTACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATGCATCAAAAATCTAACGAAAATCCTCTTCGATTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAAGAACAAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E335974" ref_strand="+" ref_description="SGN-E335974 [cTOE-6-F9]">
      <seq>tcaaactacctttgttgctgtctaataacattattagtaactttattataagccaatccaaacactctttgaagagtaaagtgtagtctacaactgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11878" stop="10719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11578" g_stop="11165" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="11019" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="451" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E335974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11578" e_stop="11165"/>
          <exon e_start="11055" e_stop="11019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTACCTTTGTTGCTGTCTAATAACATTATTAGTAACTTTATTATAAGCCAATCCAAACACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTT</genome_strand>
        <mrna_strand>TCAAACTACCTTTGTTGCTGTCTAATAACATTATTAGTAACTTTATTATAAGCCAATCCAAACACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372869" ref_strand="+" ref_description="SGN-E372869 [TUS-32-N20](-)">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctttaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="18192" stop="17347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17892" g_stop="17650" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="244" polyA_stop="263"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E372869" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17892" e_stop="17650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATTTGTGCGGAAAACTAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGAAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGATTTCCACGTA</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTTTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E372870" ref_strand="+" ref_description="SGN-E372870 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="18191" stop="17347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17891" g_stop="17650" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="263"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E372870" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17891" e_stop="17650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATTTGTGCGGAAAACTAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGAAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGATTTCCACGTA</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E378778" ref_strand="+" ref_description="SGN-E378778 [TUS-32-N20]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="18191" stop="17347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17891" g_stop="17650" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="243" polyA_stop="263"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E378778" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17891" e_stop="17650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATTTGTGCGGAAAACTAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGAAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGATTTCCACGTA</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E298763" ref_strand="+" ref_description="SGN-E298763 [cLET-44-E9]">
      <seq>gaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="18191" stop="17352"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17891" g_stop="17652" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="240" r_length="240" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E298763" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>240</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17891" e_stop="17652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATTTGTGCGGAAAACTAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGAAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGATTTCCACG</genome_strand>
        <mrna_strand>GAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="23861" stop="22454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23561" g_stop="22754" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23561" e_stop="22754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAAAAGTCCTTGTATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAATGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTCTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="24520" stop="23272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24220" g_stop="23572" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24220" e_stop="23572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCATCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTAAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGAATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAATCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAAAAATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="24519" stop="23535"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24219" g_stop="23835" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24219" e_stop="23835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCATCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTAAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E206529" ref_strand="+" ref_description="SGN-E206529 [cLEC-23-F20]">
      <seq>tttgaggcctggtggtgaatttcagggattacccattccggagtggaagtgggaccgcattactatggattttgtggctggtctaccgaggacttctagaggatttgatagtatttgggtcatcgttgatcgattgaccaagtcagcacatttccttttcgttcaatcttcatttagtgccgagaggttggctcgtatctacattcgggaggtggttcgacttcatggggtgccagtttctattatatcagatcggggttctcagttcacgtctagcttttggaggacctttcaggatgagttgggcacccaggttgacctgagcacagctttccacccgcagactgatggtcagtcagagcgcactattcaggtccttgaggacatgctacgggcttgtgttttggagtttggtggtcaatgggaccagttcttgcctttggcggaatttgcatataacaacagctacaattctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="39308" stop="40385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39608" g_stop="40085" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E206529" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39608" e_stop="40085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGGCCTGGTAGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCACATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTTTAGAGGAGTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCTGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCATGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCATAGCTTTCCACCCGCAGACTGATGGCCAGTCAGAGTGCACTATTCAGGTCCTCGAAGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGAGGAA-TTGCATATAACAACAACTACCATTCTAGCA</genome_strand>
        <mrna_strand>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTTTCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCAGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGCGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCGGAATTTGCATATAACAACAGCTACAATTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346281" ref_strand="+" ref_description="SGN-E346281 [cTOF-23-J11]">
      <seq>atatataataatcttaaattccggtgttgccttatttggtctttgaaaatttgatttgaagcttcaaaattcaactttcaacttttcacgttcggctttcggcggtcataaacgtctacttttttaagtagacgttcgaacctactgaagatattctagcatgctggagaaatcgcggcaaaggatttccaaaactacaaccgatggctcgagaatatattagcaatgcaagcgtcgtcagtagcttcggaaggcgtctttagtgcagcaaggtttcaacttggagaacatagacattcattagcagccgacagcttggatatatcggtattattttgagcttggattaatgccgagagaagaaatttgagtcgtgaaccaccaccgaccaaatttcaagatgacgttgatgaagtaatgttggattatagtgacgacgagattgaagtaatggaaaatctttctattcaaccaattcccgaacatgttactaaggaaatgttgaatgatttacgaagagatttatatggtggcacgaactattagtaaaagtatgataattcgagatttaattcaaacagaacccttcctagaaggtgggctgtgtaaattaaatcttttaatactctactaatatttttgtaaatgtaattgtaatatcaaataaatattaataaaaatataggctattcgccttaatttattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="62172" stop="58692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61872" g_stop="61761" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61760" i_stop="61647" i_length="114">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61646" g_stop="61622" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="138" r_length="25" r_score="0.680"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61621" i_stop="59536" i_length="2086">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59535" g_stop="58962" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="708" r_length="570" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E346281" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61872" e_stop="61761"/>
          <exon e_start="61646" e_stop="61622"/>
          <exon e_start="59535" e_stop="58962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATAAT-ATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACCTTTGGCTTTCGGCGGTCATAAACGTTGGTACATTCGTTCCAATTTTTATTTTACATTTCATTTATATTTAAATAATTATTTATTTTTTTTCTAATTTATTATTTGCATTATATTTTCCGTATTATATATAATCTCACGTTTTATTTTTTAATATGAATTTCGGTAAAAATATTTTTCAAAAAGGAAAGGGGGAAAAAGTGCATTAGAGCGTGTAAAAAATATTTGTAACTTTACATCCTCCGATAATGCAAAAACCGGTAGTTCTTCTATATCAAAAACTAAAAAATCTACTATATTAAGAATAAATACGGTTGATTATACACATGTTGATGATACGATTTTTAATATTGATAGTAATTCAGGATTAGATCCTTATCATGAACATTTACAACGTCGCTTTGGTAATTTTGATGAGGATTTGCCTAGTGATAATGATAATGATATTGATAATTATACTGATATGCCTACTTTTGATGATGATGATGATGAAACTGAGTCACCTACGACTACTAATACTCCCAGTCCCGCTCGCTTTCTTTGTCCTGCCCATGTTCCCCTAGTACATCCTAGGCCTAAGGTAGAACGTGTTAAAAAAAAGGTTGTTTGACAATTTATGACACAAAATGAAGATAATACACAAGCTATTTGTAATAAATGTAAACATAGATTAAATCATAAAACTGTTGGTAAATATAGCGGGACGGGACATTTGAGTAGTCATTTGCTGTCTTGTTGTAAAAATGAATTTTTGCATGTTAAAGCGGTAGCGGAAGCTAAAAAAAATCGGTACCCCCCTTCCTGAAAATGTAGGAGTAGGCAGCTCTAACATGGTACAAACACAATTAAATTTGTCTAATGTTTCAAGCTCTAGTTTACCACTTTCATATAGTAGAGAAAAAGATCTTGAAGAACTAGCTAAAATGATATTGTTATGGGTTTGCCATTTAGTTTTGCTTAAAATTCCGATTTTATACATTATATTCAAATTGTATATAATCCATATTTTAAAGATTTTGCTAGAAATACAATAAAAAAAGGTTTTATTTGATTATCATGCATAACATTTGCAATATCTTCGTTGTTTATTTTATTATAATACTTGTAAAATAGCTATTACTTCTGATATGGGTCGTAGTGTAAACGGTAACGATTATTTGACTGTTACTGCACATTGGATTCATGAAAATTGGTATATGCAAAAAAAGAATTTTAGGTTATAAATGTTGTCAAATGCAAGAAAATCGGTAGTTATATTGCTCAAACTATTTTAGATATTTTACAAAGTTATGGAATATGTGATAAAATAAGTAGTATAACCTTAGATAATGCTTCAAGTAATAATGTTACTGTTGAATATTTAAAACCTACACTTTGTCCTTTATATGGTGATAATTATCATATTAGGTGTACTGCACAAATATATAATTTGATTGTTAGAGATGGTGAACATATGTATGATAACGGATATATGAAAGTTGAAAATGCATGTCATTTAATATTTAAATGTCAAGTTAAGTCTAGGCGTAAAGATTTTTAAAATTGTTGTTTTGAAAATAATCTTCCGCCTAGAAAAATTCCAAAAACAGTGGCTACTAGATGGAATACTCTATATGAAATGCTTGTAGTAGCTTATCAATATTGAATACCCTTACAAATGGTTTTGAATGCCCATAATTCTGATATGACATATAGACTAGATGACAATGATTGGCGTGATATAAATGAACTTATAGATTTCCTAAAAGTTTTTTACTTAACTACAAAAAGAATATTTGTACTTTATAGTGCATCAACTTGTACTGTTTTGTCTGATATTTGTATGATTTCTTCTAAATTATATAAATTTAAAAATAAACCAAGATTTCAACAAACCATTGAAAAAATAATTCTAAAATTTAAAAAATATTATATTCCTATTCCATAAATTTATTTAACTGCATGTTGTTAAACCCTAAGTATAAAGATGTAGGTGCATCAAGAATGGTTGAAAAAATGTATTTTAACTTAGATATTAATGATGTATTAGAAGAAATTCCTAGTTGTCAACAAGTTAAAGATAACATAAAAACTAAAGCTAGAAAATTGTATGATTTATATAATGCTAATATAAATTTATCAAGTGAAAATGAACCTCAAAGCTCTTGGAGTAGATTTGATGAAAATAATATTGATGGTTATTTACAGGATTATCTTGAACTTTCTCACGATAATAGAAATGATTTTGATGCCTATGTTAATCAAAATATAGAACCTACTGAAGATATTCTAGCATGATGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGATCGAG-ATATATTAGTAATGCAAGCATCATCATTAGCTTCTGAAGGCGTCTTTAGTGCAGCAAGGTTTCGACTTGGAGAACATAGGCATTCACTAGCAGCAGACAGCTTGGAGATATCGATATTATTTTGAGATTGGATTAACGCCGAGAGAAGAAATTTGGGTCGTGAACCACTACCTACCAAATTTCAAGATGACGTTGATAAAGTAATGCAGGATTATGGTGACGGCGGGATTGAAGCAATGGAAGATCTTTCTATTCAACCAATTCCCGAACATGTTACTACAGAAATGTTGAATGATTTACGAAGGGATTTACATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACCCTTCCTAGAACGT-GGTTGTGTAGATTAAATCTTTTAATACTCTACTAATATTTTTGTAATTGTAATTGTAATTGTAATATAAAATAAATATTAATAAAAATATAGGTTATTCACCTTAATTTGTTTTT</genome_strand>
        <mrna_strand>ATATATAATAATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGAAAATTTGATTTGAAGCTTCAAAATTCAACTTTCAACTTTTCACGTTCGGCTTTCGGCGGTCATAAAC..................................................................................................................GTCTACTTTTTTAAGTAGACGTTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACTGAAGATATTCTAGCATGCTGGAGAAATCGCGGCAAAGGATTTCCAAAACTACAACCGATGGCTCGAGAATATATTAGCAATGCAAGCGTCGTCAGTAGCTTCGGAAGGCGTCTTTAGTGCAGCAAGGTTTCAACTTGGAGAACATAGACATTCATTAGCAGCCGACAGCTTGGATATATCGGTATTATTTTGAGCTTGGATTAATGCCGAGAGAAGAAATTTGAGTCGTGAACCACCACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGTTGGATTATAGTGACGACGAGATTGAAGTAATGGAAAATCTTTCTATTCAACCAATTCCCGAACATGTTACTAAGGAAATGTTGAATGATTTACGAAGAGATTTATATGGTGGCACGAACTATTAGTAAAAGTATGATAATTCGAGATTTAATTCAAACAGAACCCTTCCTAGAAGGTGGGCTGTGTAAATTAAATCTTTTAATACTCTACTAATATTTTTGT-A----AA-TGTAATTGTAATATCAAATAAATATTAATAAAAATATAGGCTATTCGCCTTAATTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="82265" stop="81430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81965" g_stop="81730" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81965" e_stop="81730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTAAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGT-GTTTGTACTGACCCCCTACTTTTATGTTT-TCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="83561" stop="84338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83861" g_stop="84037" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83861" e_stop="84037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAATCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCT</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84443" stop="85369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84743" g_stop="85073" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84743" e_stop="85073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTATCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCCGAGAAAGCCAAGTCATAACCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATTTGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84650" stop="85808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84950" g_stop="85508" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84950" e_stop="85508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATTTGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84734" stop="86123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85034" g_stop="85823" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85034" e_stop="85823"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTTTTTGATGTTGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCTGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCATGAAACTTAGCCTCGTATGCATTGACCGACATCCTACCTTAATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84736" stop="85869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85036" g_stop="85569" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85036" e_stop="85569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTTTTTGATGTTGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84810" stop="86107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85110" g_stop="85807" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85110" e_stop="85807"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTTTTTGATGTTGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCTGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCATGAAACTTAGCCTCGTATGCATTGACCGACATCCTACCTTAATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="85372" stop="86688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85671" g_stop="86388" g_length="718"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85671" e_stop="86388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCATGAAACTTAGCCTCGTATGCATTGACCGACATCCTACCTTAATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCTCAAGTCATAGGTGGTTCCTCTGTTGGTTGACACTCAACATGTGACCTCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCATCAACTCAACACCAAACCGTTCTACTATACACATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTAT-GGGCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTCAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGAGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCA-TTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="85374" stop="86635"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85674" g_stop="86335" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85674" e_stop="86335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCATGAAACTTAGCCTCGTATGCATTGACCGACATCCTACCTTAATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCTCAAGTCATAGGTGGTTCCTCTGTTGGTTGACACTCAACATGTGACCTCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCATCAACTCAACACCAAACCGTTCTACTATACACATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTAT-GGGCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTCAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGAGTAGGCTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCA-TTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="87691" stop="86856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87391" g_stop="87156" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>236</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87391" e_stop="87156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATATTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGT-GTTTGTACTGACCCCCTACTTTTATGTTT-TCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGA-CCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>38</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3558" PGL_stop="3140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3558" e_stop="3140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="3558" e_stop="3140" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3558" stop="3140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAATTAAGGAATAAAAGAAAAAACAAAATAAAAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAAAATCATATATACCCCTAAATAATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGATATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGACATATATGAGCCACTTTTGTAACGAGGGGTATATCAGCTTCAAATGACAAAATTGAGGG</gDNA_template>
            <first_frame> L  L  *  M  T  K  I  F  L  R  I  R  N  *  I  T  I  H  T  K  K  *  F  N  F  L  F  F  K  L  R  N  K  R  K  N  K  I  K  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  Y  F  D  R  K  I  I  Y  T  P  K  *  F  L  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  D  I  C  E  P  F  Y  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  V  T  R  G  I  S  A  S  N  D  K  I  E   </first_frame>
            <second_frame>  Y  C  R  *  P  K  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  I  K  E  K  T  K  *  K  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  C  T  L  I  E  K  S  Y  I  P  L  N  N  F  *  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  I  Y  V  S  H  F  I  T  A  G  V  Y  V  S  R  L  Y  N  G  K  D  I  Y  E  P  L  L  *  R  G  V  Y  Q  L  Q  M  T  K  L  R  </second_frame>
            <third_frame>   I  V  D  D  Q  N  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  I  V  *  F  F  I  L  *  I  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  V  L  *  *  K  N  H  I  Y  P  *  I  I  F  K  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  T  Y  M  S  H  F  C  N  E  G  Y  I  S  F  K  *  Q  N  *  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4869" PGL_stop="8202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4869" e_stop="4931"/>
            <exon e_start="5528" e_stop="5835"/>
            <exon e_start="5967" e_stop="6133"/>
            <exon e_start="6932" e_stop="7028"/>
            <exon e_start="7110" e_stop="7501"/>
            <exon e_start="7583" e_stop="8202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.787" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4869" e_stop="4931" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.712">
            <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5528" e_stop="5835" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5967" e_stop="6133" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.787" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6134" i_stop="6931" i_length="798"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6932" e_stop="7028" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7110" e_stop="7501" e_length="392"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7502" i_stop="7582" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="7583" e_stop="8202" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4869" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4877" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4879" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6133"/>
              <exon start="6932" stop="6969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4889" stop="4931"/>
              <exon start="5528" stop="5725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280688" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4895" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6133"/>
              <exon start="6932" stop="7028"/>
              <exon start="7110" stop="7131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7008" stop="7028"/>
              <exon start="7110" stop="7501"/>
              <exon start="7583" stop="8202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAATCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG : GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG : GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAG : GATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG : ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTG : GTATATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</gDNA_template>
            <first_frame> A  K  S  T  T  T  L  Y  T  Q  R  S  I  F  I  A  L  Y  L  H  E  :  V  G  V  G  G  H  S  I  E  *  W  R  L  P  L  I  Q  T  F  C  A  I  M  R  P  S  N  V  K  L  D  Q  G  F  R  V  I  Q  D  L  A  G  V  E  Q  I  T  L  V  V  *  S  *  *  K  F  V  P  E  D  R  Y  L  H  T  C  R  N  L  L  E  Y  V  V  V  W  I  L  E  V  C  N  Y  H  H  G  G  N  K  I  F  L  L  H  I  E  L  T  R  M  Y  L  R :   E  I  Q  Y  G  N  F  Q  K  M  *  L  *  W  S  *  R  N  G  A  N  W  P  K  Q  Q  L  *  L  Y  L  F  C  Q  L  L  Q  R  L  M  P  L  M  L  S  K  L  V  L  A  Y  *  K  S  A   : G  *  S  L  R  S  A  S  Q  T  L  H  V  Q  L  M  L  P  V  S  K  H  A  T  I  D  L  M  K  R  N  V  R :   *  N  V  V  I  C  L  K  T  V  L  *  T  S  S  M  S  V  Q  S  P  G  R  N  V  Y  L  V  N  L  M  L  V  T  F  L  C  L  I  P  V  F  S  S  K  S  L  T  *  M  I  L  L  E  N  G  T  S  L  A  V  *  I  P  H  L  M  F  L  I  V  N  C  M  S  S  I  Q  K  E  T  N  L  W  E  V  *  L  G  E  *  G  H  L  M  E  D  F  S  L  D  P  Q  C  K  N  S  C  K  I  Q  S  I  P  G  Y  S  T  I  M  I  M  S  I  F  T  T  K  M  T   : G  I  F  C  H  P  K  L  K  T  V  Q  M  I  T  Y  L  C  T  I  R  A  E  M  M  H  G  M  D  M  V  V  L  Y  F  I  L  E  A  P  F  C  L  K  R  L  Y  L  S  C  K  L  Q  L  K  K  L  V  V  I  S  T  L  S  *  K  Q  T  I  L  V  A  L  S  H  P  L  L  N  G  *  R  R  K  W  K  K  E  S  G  Q  S  *  K  K  S  R  K  *  K  K  K  S  R  R  *  R  K  K  K  S  A  Y  S  V  D  C  S  K  V  S  K  S  C  N  K  M  K  K  T  L  *  E  S  S  A  K  K  K  W  I  F  W  M  D  L  K  W  K  Q  L  K  *  K  N  S  L  E  M  H  Y  Q  *  G  N  *  G  K  Y  C  Y  E  S  Y  I  R  N  H  P  H  T  E  C  I  D  C  I  *  F  T  F  Y  L  F  V  W  N  R  L  L  I  Y  H  V  M  L  Q </first_frame>
            <second_frame>  Q  N  P  Q  Q  L  F  I  L  N  V  Q  S  S  *  H  S  I  Y  M  R :   L  E  L  V  V  I  Q  L  N  N  G  A  C  P  S  F  K  H  S  V  Q  S  *  G  H  Q  M  S  S  W  I  K  A  S  E  S  Y  K  I  *  L  G  *  S  R  L  L  W  *  Y  S  P  S  E  N  L  F  Q  K  T  D  T  Y  I  L  A  E  I  F  *  N  M  L  W  F  G  F  *  K  S  A  T  I  I  T  G  E  T  K  S  F  F  C  T  *  N  *  P  E  C  T  *   : G  K  Y  N  M  E  I  S  R  R  C  S  F  D  G  L  E  E  M  G  P  I  G  Q  N  S  N  C  N  Y  I  Y  F  V  S  C  F  K  G  *  C  R  *  C  S  Q  N  L  Y  L  L  T  E  R  V  Q  :  D  R  A  C  E  V  H  L  K  P  C  M  C  S  *  C  C  L  S  P  N  M  Q  Q  *  T  *  *  N  G  M  S   : D  K  M  W  *  F  V  *  K  Q  C  C  R  R  V  Q  *  V  C  S  L  P  E  E  M  C  T  S  *  I  *  C  W  *  L  S  C  A  *  S  Q  C  S  R  P  K  V  *  H  E  *  F  Y  W  K  M  V  H  H  S  R  F  E  S  H  I  *  C  F  *  L  S  I  A  *  V  P  Y  R  R  K  Q  T  C  G  K  S  D  L  E  N  R  D  T  *  W  R  I  F  H  S  I  R  S  A  K  I  R  A  R  S  K  V  S  R  D  T  L  Q  S  *  *  *  V  S  S  L  P  R  *  L  :  V  Y  F  V  I  Q  S  *  K  Q  S  R  *  L  H  I  C  V  L  *  G  Q  K  *  C  M  G  W  I  W  W  F  C  T  L  Y  *  K  L  R  F  A  *  N  D  Y  T  *  V  A  N  C  S  S  K  S  W  S  *  F  Q  H  F  H  K  N  R  Q  Y  L  W  P  *  A  T  P  C  *  T  V  R  E  E  S  G  R  R  R  A  D  N  H  K  R  S  R  G  N  R  R  R  S  R  E  G  E  G  K  R  S  Q  L  I  Q  *  T  V  R  R  F  Q  R  A  A  T  R  *  R  K  L  Y  K  R  A  Q  Q  R  R  N  G  Y  F  G  W  T  *  N  G  S  N  *  S  R  K  T  L  W  K  C  I  T  N  K  E  I  K  V  N  I  V  M  R  V  I  L  E  T  I  H  I  Q  N  V  *  I  V  F  N  L  L  F  I  F  L  S  G  I  D  C  L  Y  I  M  *  C  S   </second_frame>
            <third_frame>   K  I  H  N  N  S  L  Y  S  T  F  N  L  H  S  T  L  F  T  *   : G  W  S  W  W  S  F  N  *  I  M  A  L  A  P  H  S  N  I  L  C  N  H  E  A  I  K  C  Q  V  G  S  R  L  Q  S  H  T  R  F  S  W  G  R  A  D  Y  F  G  S  I  V  L  V  K  I  C  S  R  R  Q  I  P  T  Y  L  Q  K  S  S  R  I  C  C  G  L  D  S  R  S  L  Q  L  S  S  R  G  K  Q  N  L  S  S  A  H  R  I  N  Q  N  V  P  K  :  G  N  T  I  W  K  F  P  E  D  V  A  L  M  V  L  K  K  W  G  Q  L  A  K  T  A  I  V  T  I  F  I  L  S  V  A  S  K  A  D  A  V  D  A  L  K  T  C  T  C  L  L  K  E  C  R :   I  E  L  A  K  C  I  S  N  P  A  C  A  A  N  V  A  C  L  Q  T  C  N  N  R  P  D  E  T  E  C  Q  :  I  K  C  G  D  L  F  E  N  S  V  V  D  E  F  N  E  C  A  V  S  R  K  K  C  V  P  R  K  S  D  V  G  D  F  P  V  P  D  P  S  V  L  V  Q  K  F  D  M  N  D  F  I  G  K  W  Y  I  T  R  G  L  N  P  T  F  D  V  F  D  C  Q  L  H  E  F  H  T  E  G  N  K  L  V  G  S  L  T  W  R  I  G  T  P  D  G  G  F  F  T  R  S  A  V  Q  K  F  V  Q  D  P  K  Y  P  G  I  L  Y  N  H  D  N  E  Y  L  H  Y  Q  D  D  W :   Y  I  L  S  S  K  V  E  N  S  P  D  D  Y  I  F  V  Y  Y  K  G  R  N  D  A  W  D  G  Y  G  G  S  V  L  Y  T  R  S  S  V  L  P  E  T  I  I  P  E  L  Q  I  A  A  Q  K  V  G  R  D  F  N  T  F  I  K  T  D  N  T  C  G  P  E  P  P  L  V  E  R  L  E  K  K  V  E  E  G  E  R  T  I  I  K  E  V  E  E  I  E  E  E  V  E  K  V  K  E  K  E  V  S  L  F  S  R  L  F  E  G  F  K  E  L  Q  Q  D  E  E  N  F  I  R  E  L  S  K  E  E  M  D  I  L  D  G  L  K  M  E  A  T  E  V  E  K  L  F  G  N  A  L  P  I  R  K  L  R  *  I  L  L  *  E  L  Y  *  K  P  S  T  Y  R  M  Y  R  L  Y  L  I  Y  F  L  S  F  C  L  E  *  I  A  Y  I  S  C  N  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5554" stop="5835"/>
                    <exon start="5967" stop="6133"/>
                    <exon start="6932" stop="7028"/>
                    <exon start="7110" stop="7501"/>
                    <exon start="7583" stop="8084"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMALAPHSNILCNHEAIKCQVGSRLQSHTRFSWGRADYFGSIVLVKICSRRQIPTYLQKSSRICCGLDSRSLQLSSRGKQNLSSAHRINQNVPKGNTIWKFPEDVALMVLKKWGQLAKTAIVTIFILSVASKADAVDALKTCTCLLKECRIELAKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMNDFIGKWYITRGLNPTFDVFDCQLHEFHTEGNKLVGSLTWRIGTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSSVLPETIIPELQIAAQKVGRDFNTFIKTDNTCGPEPPLVERLEKKVEEGERTIIKEVEEIEEEVEKVKEKEVSLFSRLFEGFKELQQDEENFIRELSKEEMDILDGLKMEATEVEKLFGNALPIRKLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4869" e_stop="4931"/>
            <exon e_start="5528" e_stop="5835"/>
            <exon e_start="5967" e_stop="6163"/>
            <exon e_start="6932" e_stop="7028"/>
            <exon e_start="7110" e_stop="7501"/>
            <exon e_start="7583" e_stop="8202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4869" e_stop="4931" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.712">
            <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5528" e_stop="5835" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5967" e_stop="6163" e_length="197"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6164" i_stop="6931" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="6932" e_stop="7028" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7110" e_stop="7501" e_length="392"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7502" i_stop="7582" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="7583" e_stop="8202" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4869" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6128"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200497" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4877" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4878" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6163"/>
              <exon start="6932" stop="7028"/>
              <exon start="7110" stop="7168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340670" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4889" stop="4931"/>
              <exon start="5528" stop="5725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280688" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7008" stop="7028"/>
              <exon start="7110" stop="7501"/>
              <exon start="7583" stop="8202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747121" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAATCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG : GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG : GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCG : GATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG : ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTG : GTATATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</gDNA_template>
            <first_frame> A  K  S  T  T  T  L  Y  T  Q  R  S  I  F  I  A  L  Y  L  H  E  :  V  G  V  G  G  H  S  I  E  *  W  R  L  P  L  I  Q  T  F  C  A  I  M  R  P  S  N  V  K  L  D  Q  G  F  R  V  I  Q  D  L  A  G  V  E  Q  I  T  L  V  V  *  S  *  *  K  F  V  P  E  D  R  Y  L  H  T  C  R  N  L  L  E  Y  V  V  V  W  I  L  E  V  C  N  Y  H  H  G  G  N  K  I  F  L  L  H  I  E  L  T  R  M  Y  L  R :   E  I  Q  Y  G  N  F  Q  K  M  *  L  *  W  S  *  R  N  G  A  N  W  P  K  Q  Q  L  *  L  Y  L  F  C  Q  L  L  Q  R  L  M  P  L  M  L  S  K  L  V  L  A  Y  *  K  S  A  G  N  L  Q  M  L  L  K  Y  A   : G  *  S  L  R  S  A  S  Q  T  L  H  V  Q  L  M  L  P  V  S  K  H  A  T  I  D  L  M  K  R  N  V  R :   *  N  V  V  I  C  L  K  T  V  L  *  T  S  S  M  S  V  Q  S  P  G  R  N  V  Y  L  V  N  L  M  L  V  T  F  L  C  L  I  P  V  F  S  S  K  S  L  T  *  M  I  L  L  E  N  G  T  S  L  A  V  *  I  P  H  L  M  F  L  I  V  N  C  M  S  S  I  Q  K  E  T  N  L  W  E  V  *  L  G  E  *  G  H  L  M  E  D  F  S  L  D  P  Q  C  K  N  S  C  K  I  Q  S  I  P  G  Y  S  T  I  M  I  M  S  I  F  T  T  K  M  T   : G  I  F  C  H  P  K  L  K  T  V  Q  M  I  T  Y  L  C  T  I  R  A  E  M  M  H  G  M  D  M  V  V  L  Y  F  I  L  E  A  P  F  C  L  K  R  L  Y  L  S  C  K  L  Q  L  K  K  L  V  V  I  S  T  L  S  *  K  Q  T  I  L  V  A  L  S  H  P  L  L  N  G  *  R  R  K  W  K  K  E  S  G  Q  S  *  K  K  S  R  K  *  K  K  K  S  R  R  *  R  K  K  K  S  A  Y  S  V  D  C  S  K  V  S  K  S  C  N  K  M  K  K  T  L  *  E  S  S  A  K  K  K  W  I  F  W  M  D  L  K  W  K  Q  L  K  *  K  N  S  L  E  M  H  Y  Q  *  G  N  *  G  K  Y  C  Y  E  S  Y  I  R  N  H  P  H  T  E  C  I  D  C  I  *  F  T  F  Y  L  F  V  W  N  R  L  L  I  Y  H  V  M  L  Q </first_frame>
            <second_frame>  Q  N  P  Q  Q  L  F  I  L  N  V  Q  S  S  *  H  S  I  Y  M  R :   L  E  L  V  V  I  Q  L  N  N  G  A  C  P  S  F  K  H  S  V  Q  S  *  G  H  Q  M  S  S  W  I  K  A  S  E  S  Y  K  I  *  L  G  *  S  R  L  L  W  *  Y  S  P  S  E  N  L  F  Q  K  T  D  T  Y  I  L  A  E  I  F  *  N  M  L  W  F  G  F  *  K  S  A  T  I  I  T  G  E  T  K  S  F  F  C  T  *  N  *  P  E  C  T  *   : G  K  Y  N  M  E  I  S  R  R  C  S  F  D  G  L  E  E  M  G  P  I  G  Q  N  S  N  C  N  Y  I  Y  F  V  S  C  F  K  G  *  C  R  *  C  S  Q  N  L  Y  L  L  T  E  R  V  Q  V  I  C  R  C  Y  *  S  M  P  :  D  R  A  C  E  V  H  L  K  P  C  M  C  S  *  C  C  L  S  P  N  M  Q  Q  *  T  *  *  N  G  M  S   : D  K  M  W  *  F  V  *  K  Q  C  C  R  R  V  Q  *  V  C  S  L  P  E  E  M  C  T  S  *  I  *  C  W  *  L  S  C  A  *  S  Q  C  S  R  P  K  V  *  H  E  *  F  Y  W  K  M  V  H  H  S  R  F  E  S  H  I  *  C  F  *  L  S  I  A  *  V  P  Y  R  R  K  Q  T  C  G  K  S  D  L  E  N  R  D  T  *  W  R  I  F  H  S  I  R  S  A  K  I  R  A  R  S  K  V  S  R  D  T  L  Q  S  *  *  *  V  S  S  L  P  R  *  L  :  V  Y  F  V  I  Q  S  *  K  Q  S  R  *  L  H  I  C  V  L  *  G  Q  K  *  C  M  G  W  I  W  W  F  C  T  L  Y  *  K  L  R  F  A  *  N  D  Y  T  *  V  A  N  C  S  S  K  S  W  S  *  F  Q  H  F  H  K  N  R  Q  Y  L  W  P  *  A  T  P  C  *  T  V  R  E  E  S  G  R  R  R  A  D  N  H  K  R  S  R  G  N  R  R  R  S  R  E  G  E  G  K  R  S  Q  L  I  Q  *  T  V  R  R  F  Q  R  A  A  T  R  *  R  K  L  Y  K  R  A  Q  Q  R  R  N  G  Y  F  G  W  T  *  N  G  S  N  *  S  R  K  T  L  W  K  C  I  T  N  K  E  I  K  V  N  I  V  M  R  V  I  L  E  T  I  H  I  Q  N  V  *  I  V  F  N  L  L  F  I  F  L  S  G  I  D  C  L  Y  I  M  *  C  S   </second_frame>
            <third_frame>   K  I  H  N  N  S  L  Y  S  T  F  N  L  H  S  T  L  F  T  *   : G  W  S  W  W  S  F  N  *  I  M  A  L  A  P  H  S  N  I  L  C  N  H  E  A  I  K  C  Q  V  G  S  R  L  Q  S  H  T  R  F  S  W  G  R  A  D  Y  F  G  S  I  V  L  V  K  I  C  S  R  R  Q  I  P  T  Y  L  Q  K  S  S  R  I  C  C  G  L  D  S  R  S  L  Q  L  S  S  R  G  K  Q  N  L  S  S  A  H  R  I  N  Q  N  V  P  K  :  G  N  T  I  W  K  F  P  E  D  V  A  L  M  V  L  K  K  W  G  Q  L  A  K  T  A  I  V  T  I  F  I  L  S  V  A  S  K  A  D  A  V  D  A  L  K  T  C  T  C  L  L  K  E  C  R  *  F  A  D  V  T  K  V  C  R :   I  E  L  A  K  C  I  S  N  P  A  C  A  A  N  V  A  C  L  Q  T  C  N  N  R  P  D  E  T  E  C  Q  :  I  K  C  G  D  L  F  E  N  S  V  V  D  E  F  N  E  C  A  V  S  R  K  K  C  V  P  R  K  S  D  V  G  D  F  P  V  P  D  P  S  V  L  V  Q  K  F  D  M  N  D  F  I  G  K  W  Y  I  T  R  G  L  N  P  T  F  D  V  F  D  C  Q  L  H  E  F  H  T  E  G  N  K  L  V  G  S  L  T  W  R  I  G  T  P  D  G  G  F  F  T  R  S  A  V  Q  K  F  V  Q  D  P  K  Y  P  G  I  L  Y  N  H  D  N  E  Y  L  H  Y  Q  D  D  W :   Y  I  L  S  S  K  V  E  N  S  P  D  D  Y  I  F  V  Y  Y  K  G  R  N  D  A  W  D  G  Y  G  G  S  V  L  Y  T  R  S  S  V  L  P  E  T  I  I  P  E  L  Q  I  A  A  Q  K  V  G  R  D  F  N  T  F  I  K  T  D  N  T  C  G  P  E  P  P  L  V  E  R  L  E  K  K  V  E  E  G  E  R  T  I  I  K  E  V  E  E  I  E  E  E  V  E  K  V  K  E  K  E  V  S  L  F  S  R  L  F  E  G  F  K  E  L  Q  Q  D  E  E  N  F  I  R  E  L  S  K  E  E  M  D  I  L  D  G  L  K  M  E  A  T  E  V  E  K  L  F  G  N  A  L  P  I  R  K  L  R  *  I  L  L  *  E  L  Y  *  K  P  S  T  Y  R  M  Y  R  L  Y  L  I  Y  F  L  S  F  C  L  E  *  I  A  Y  I  S  C  N  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6138" stop="6163"/>
                    <exon start="6932" stop="7028"/>
                    <exon start="7110" stop="7501"/>
                    <exon start="7583" stop="8084"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FADVTKVCRIELAKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMNDFIGKWYITRGLNPTFDVFDCQLHEFHTEGNKLVGSLTWRIGTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSSVLPETIIPELQIAAQKVGRDFNTFIKTDNTCGPEPPLVERLEKKVEEGERTIIKEVEEIEEEVEKVKEKEVSLFSRLFEGFKELQQDEENFIRELSKEEMDILDGLKMEATEVEKLFGNALPIRKLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5554" stop="5835"/>
                    <exon start="5967" stop="6137"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMALAPHSNILCNHEAIKCQVGSRLQSHTRFSWGRADYFGSIVLVKICSRRQIPTYLQKSSRICCGLDSRSLQLSSRGKQNLSSAHRINQNVPKGNTIWKFPEDVALMVLKKWGQLAKTAIVTIFILSVASKADAVDALKTCTCLLKECR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11578" PGL_stop="8345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11578" e_stop="11165"/>
            <exon e_start="11055" e_stop="10887"/>
            <exon e_start="10630" e_stop="10450"/>
            <exon e_start="10371" e_stop="10288"/>
            <exon e_start="10093" e_stop="9986"/>
            <exon e_start="9172" e_stop="8903"/>
            <exon e_start="8704" e_stop="8345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11578" e_stop="11165" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11055" e_stop="10887" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.958">
            <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10630" e_stop="10450" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10371" e_stop="10288" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10287" i_stop="10094" i_length="194"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10093" e_stop="9986" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.900">
            <gDNA_intron_boundary i_start="9985" i_stop="9173" i_length="813"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9172" e_stop="8903" e_length="270"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8902" i_stop="8705" i_length="198"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8704" e_stop="8345" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11578" stop="11165"/>
              <exon start="11055" stop="11019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11516" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10450"/>
              <exon start="10371" stop="10288"/>
              <exon start="10093" stop="9986"/>
              <exon start="9172" stop="8903"/>
              <exon start="8704" stop="8345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11502" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10489"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11490" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10450"/>
              <exon start="10371" stop="10328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345553" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11490" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11490" stop="11165"/>
              <exon start="11055" stop="10949"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11489" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10450"/>
              <exon start="10371" stop="10334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11489" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10450"/>
              <exon start="10371" stop="10367"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11485" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11484" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10450"/>
              <exon start="10371" stop="10288"/>
              <exon start="10093" stop="10076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11484" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACTACCTTTGTTGCTGTCTAATAACATTATTAGTAACTTTATTATAAGCCAATCCAAACACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG : GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG : GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAG : CTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAATTCAGCTCCATAAG : ATTGAGCTGAACCAAGTACGCAACATGGTTGCAGACATGAGCTGTCCTGGCAAAAGCTTAGACCTGAGGTTGATGTTAAACACCAAGAAAATCATGACGGGTTTATCT : GATGAGGAGATCAATGAAATTAAAAGTCTTATCGGTTCAGCTGTGTTGGACTCTGAAGTTAAGGGTGGGCTGAGATGGCCCTTTGGCGAGGATTCTTCAGGGAGTCGATATGCTGTTACCGGTGTCTGGCACACAACTGCAAAATCGTATGGGAATTCGTCAATTAGGCTTAAGCTTAGACATGCAGATCGATATGATTTCAGATCTTCAACTGGTGAGGTTGCACAGGAAGTTAACCTGAAAATGTCTGGGATTTTATCCCAATTGCAG : GAGGAAACGATTGACGAAAACCTGGTGCTTAAAATGCTGGAAGACAACTTGAAGTTAATCTGGGATCACTGTTTGGATGATGGTTCTTCAAGCTGATGACCATATTTCGCGGTCCTTCACTCTCTTTGCAAAATATCTGCAGAAACTCACAAGCTATGGTCGTTTGGTGAAGAAAGTTACCTTTTGTAGTTTGCAGTGGTGGAATGTATAGATGGATAACTGAATTGTTAAACTCAAAATGTTGAATGCTGTTTGCAGTATATTGTTTTGCGTATGGAATGAAATGAACCAAGGCCTCTGATGGTAGCGGCATCAGTAAAGGAATAGTTTTGTTTTTGTAATGGATCGAACTTCTTAGTT</gDNA_template>
            <first_frame> S  N  Y  L  C  C  C  L  I  T  L  L  V  T  L  L  *  A  N  P  N  T  L  *  R  V  K  C  S  L  Q  L  N  S  L  S  E  C  S  L  Q  L  N  S  V  S  E  P  C  L  T  F  H  H  T  R  G  T  Q  R  V  H  R  R  R  N  Q  L  R  H  R  N  Q  C  Y  L  P  *  E  K  A  *  I  S  R  E  R  K  T  F  G  S  R  S  V  M  L  M  V  Q  L  G  N  G  S  L  L  V  *  L  I  F  H  L  L  S  T  F  N  L  F  L  S  I  K  N  L  T  K  I  L  F  V  W  C  *  C  K  :  V  A  M  E  E  R  M  M  S  H  G  V  W  W  L  K  M  *  W  K  T  Y  F  C  H  F  N  M  S  N  L  *  W  R  N  L  I  W  K  K  N  Q  S  R  V  *  L  L  V  L  E  E  F  S  F  M   : G  F  L  Q  K  V  K  N  P  S  I  V  T  Y  *  R  K  L  P  *  G  K  *  E  N  L  S  I  P  V  F  L  F  H  T  W  N  I  Y  E  T  L  Q  L  K  N  L  T  Y  N  M  W  R  R  R  N  Y  T  T  S  S :   F  Q  T  T  C  A  L  I  Q  L  S  P  A  N  V  R  W  S  R  I  R  R  K  F  S  S  I  R :   L  S  *  T  K  Y  A  T  W  L  Q  T  *  A  V  L  A  K  A  *  T  *  G  *  C  *  T  P  R  K  S  *  R  V  Y  L :   M  R  R  S  M  K  L  K  V  L  S  V  Q  L  C  W  T  L  K  L  R  V  G  *  D  G  P  L  A  R  I  L  Q  G  V  D  M  L  L  P  V  S  G  T  Q  L  Q  N  R  M  G  I  R  Q  L  G  L  S  L  D  M  Q  I  D  M  I  S  D  L  Q  L  V  R  L  H  R  K  L  T  *  K  C  L  G  F  Y  P  N  C  R :   R  K  R  L  T  K  T  W  C  L  K  C  W  K  T  T  *  S  *  S  G  I  T  V  W  M  M  V  L  Q  A  D  D  H  I  S  R  S  F  T  L  F  A  K  Y  L  Q  K  L  T  S  Y  G  R  L  V  K  K  V  T  F  C  S  L  Q  W  W  N  V  *  M  D  N  *  I  V  K  L  K  M  L  N  A  V  C  S  I  L  F  C  V  W  N  E  M  N  Q  G  L  *  W  *  R  H  Q  *  R  N  S  F  V  F  V  M  D  R  T  S  *   </first_frame>
            <second_frame>  Q  T  T  F  V  A  V  *  *  H  Y  *  *  L  Y  Y  K  P  I  Q  T  L  F  E  E  *  S  V  V  Y  N  *  T  V  S  L  S  V  V  Y  N  *  T  V  S  P  S  H  V  L  H  S  T  T  Q  E  A  H  K  G  F  T  V  A  G  T  N  S  G  T  G  I  S  A  T  C  L  E  K  K  P  E  F  Q  E  K  G  K  H  S  A  R  D  P  L  C  S  W  C  S  *  E  M  V  P  C  W  F  D  S  F  F  I  S  C  Q  P  S  T  S  F  Y  P  S  K  I  *  R  K  S  S  S  F  G  A  N  A  R :   L  Q  W  R  N  E  *  *  A  M  A  F  G  G  *  K  C  D  G  R  L  T  F  V  I  S  T  C  Q  I  C  N  G  G  I  *  Y  G  R  R  I  K  A  E  S  S  C  S  F  W  K  N  S  L  S  W  :  D  F  C  K  K  S  R  I  P  Q  *  *  P  I  K  G  N  Y  L  E  A  N  E  K  I  F  L  Y  Q  C  S  S  F  I  H  G  I  Y  T  K  P  C  S  *  K  T  *  L  T  I  C  G  G  E  G  I  I  L  R  Q   : A  F  R  Q  H  A  R  *  F  N  C  H  L  Q  M  Y  G  G  Q  G  S  G  E  N  S  A  P  *   : D  *  A  E  P  S  T  Q  H  G  C  R  H  E  L  S  W  Q  K  L  R  P  E  V  D  V  K  H  Q  E  N  H  D  G  F  I   : *  *  G  D  Q  *  N  *  K  S  Y  R  F  S  C  V  G  L  *  S  *  G  W  A  E  M  A  L  W  R  G  F  F  R  E  S  I  C  C  Y  R  C  L  A  H  N  C  K  I  V  W  E  F  V  N  *  A  *  A  *  T  C  R  S  I  *  F  Q  I  F  N  W  *  G  C  T  G  S  *  P  E  N  V  W  D  F  I  P  I  A   : G  G  N  D  *  R  K  P  G  A  *  N  A  G  R  Q  L  E  V  N  L  G  S  L  F  G  *  W  F  F  K  L  M  T  I  F  R  G  P  S  L  S  L  Q  N  I  C  R  N  S  Q  A  M  V  V  W  *  R  K  L  P  F  V  V  C  S  G  G  M  Y  R  W  I  T  E  L  L  N  S  K  C  *  M  L  F  A  V  Y  C  F  A  Y  G  M  K  *  T  K  A  S  D  G  S  G  I  S  K  G  I  V  L  F  L  *  W  I  E  L  L  S  </second_frame>
            <third_frame>   K  L  P  L  L  L  S  N  N  I  I  S  N  F  I  I  S  Q  S  K  H  S  L  K  S  K  V  *  S  T  T  E  Q  S  L  *  V  *  S  T  T  E  Q  C  L  R  A  M  S  Y  I  P  P  H  K  R  H  T  K  G  S  P  S  P  E  P  T  P  A  P  E  S  V  L  P  A  L  R  K  S  L  N  F  K  R  K  E  N  I  R  L  E  I  R  Y  A  H  G  A  V  R  K  W  F  P  V  G  L  T  H  F  S  S  L  V  N  L  Q  P  L  S  I  H  Q  K  S  N  E  N  P  L  R  L  V  L  M  Q   : G  C  N  G  G  T  N  D  E  P  W  R  L  V  A  K  N  V  M  E  D  L  L  L  S  F  Q  H  V  K  S  V  M  E  E  S  N  M  E  E  E  S  K  P  S  L  V  A  R  F  G  R  I  L  F  H  G :   I  S  A  K  S  Q  E  S  L  N  S  N  L  L  K  E  T  T  L  R  Q  M  R  K  S  F  Y  T  S  V  P  L  S  Y  M  E  Y  I  R  N  L  A  V  E  K  L  D  L  Q  Y  V  E  E  K  E  L  Y  Y  V  K  :  L  S  D  N  M  R  A  D  S  T  V  T  C  K  C  T  V  V  K  D  Q  E  K  I  Q  L  H  K  :  I  E  L  N  Q  V  R  N  M  V  A  D  M  S  C  P  G  K  S  L  D  L  R  L  M  L  N  T  K  K  I  M  T  G  L  S  :  D  E  E  I  N  E  I  K  S  L  I  G  S  A  V  L  D  S  E  V  K  G  G  L  R  W  P  F  G  E  D  S  S  G  S  R  Y  A  V  T  G  V  W  H  T  T  A  K  S  Y  G  N  S  S  I  R  L  K  L  R  H  A  D  R  Y  D  F  R  S  S  T  G  E  V  A  Q  E  V  N  L  K  M  S  G  I  L  S  Q  L  Q  :  E  E  T  I  D  E  N  L  V  L  K  M  L  E  D  N  L  K  L  I  W  D  H  C  L  D  D  G  S  S  S  *  *  P  Y  F  A  V  L  H  S  L  C  K  I  S  A  E  T  H  K  L  W  S  F  G  E  E  S  Y  L  L  *  F  A  V  V  E  C  I  D  G  *  L  N  C  *  T  Q  N  V  E  C  C  L  Q  Y  I  V  L  R  M  E  *  N  E  P  R  P  L  M  V  A  A  S  V  K  E  *  F  C  F  C  N  G  S  N  F  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11462" stop="11165"/>
                    <exon start="11055" stop="10887"/>
                    <exon start="10630" stop="10450"/>
                    <exon start="10371" stop="10288"/>
                    <exon start="10093" stop="9986"/>
                    <exon start="9172" stop="8903"/>
                    <exon start="8704" stop="8609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STTEQCLRAMSYIPPHKRHTKGSPSPEPTPAPESVLPALRKSLNFKRKENIRLEIRYAHGAVRKWFPVGLTHFSSLVNLQPLSIHQKSNENPLRLVLMQGCNGGTNDEPWRLVAKNVMEDLLLSFQHVKSVMEESNMEEESKPSLVARFGRILFHGISAKSQESLNSNLLKETTLRQMRKSFYTSVPLSYMEYIRNLAVEKLDLQYVEEKELYYVKLSDNMRADSTVTCKCTVVKDQEKIQLHKIELNQVRNMVADMSCPGKSLDLRLMLNTKKIMTGLSDEEINEIKSLIGSAVLDSEVKGGLRWPFGEDSSGSRYAVTGVWHTTAKSYGNSSIRLKLRHADRYDFRSSTGEVAQEVNLKMSGILSQLQEETIDENLVLKMLEDNLKLIWDHCLDDGSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17892" PGL_stop="17650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17892" e_stop="17650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="17892" e_stop="17650" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17892" stop="17650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372869" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17891" stop="17652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298763" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATTTGTGCGGAAAACTAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGAAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGATTTCCACGTA</gDNA_template>
            <first_frame> R  I  T  K  E  R  K  E  E  *  G  I  T  E  E  N  N  L  C  G  K  L  E  S  V  S  D  I  V  V  R  W  K  N  Q  K  S  V  I  S  F  E  C  E  V  V  F  G  V  L  L  R  H  T  S  V  K  S  L  L  *  *  Y  S  L  L  L  S  G  R  G  F  S  L  I  *  E  D  F  H  V </first_frame>
            <second_frame>  E  L  Q  R  R  E  K  K  S  E  A  S  Q  R  K  I  I  C  A  E  N  *  R  V  *  A  I  L  *  *  G  G  K  I  K  R  V  L  F  L  L  N  V  K  W  S  L  E  F  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  R  C  S  S  R  V  V  V  F  P  L  F  R  R  I  S  T   </second_frame>
            <third_frame>   N  Y  K  G  E  K  R  R  V  R  H  H  R  G  K  *  F  V  R  K  T  R  E  C  E  R  Y  C  S  E  V  E  K  S  K  E  C  Y  F  F  *  M  *  S  G  L  W  S  F  T  Q  T  Y  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  W  F  F  P  Y  L  G  G  F  P  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23561" PGL_stop="22754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23561" e_stop="22754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="23561" e_stop="22754" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23561" stop="22754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAAAAGTCCTTGTATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAATGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTCTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  K  S  P  C  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  M  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  K  V  L  V  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  N  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  S  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23559" stop="22756"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPNAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVSTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24220" PGL_stop="23572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24220" e_stop="23572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="24220" e_stop="23572" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24220" stop="23572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24219" stop="23835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCATCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTAAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGAATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAATCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAAAAATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  I  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  N  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  S  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  F  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  K  N  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  K  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  K  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  H  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  E  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  I  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  K  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24219" stop="23572"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSKKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEKIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39608" PGL_stop="40085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39608" e_stop="40085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="39608" e_stop="40085" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39608" stop="40085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAGGCCTGGTAGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCACATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTTTAGAGGAGTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCTGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCATGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCATAGCTTTCCACCCGCAGACTGATGGCCAGTCAGAGTGCACTATTCAGGTCCTCGAAGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGAGGAATTGCATATAACAACAACTACCATTCTAGCA</gDNA_template>
            <first_frame> F  E  A  W  *  *  I  S  G  I  T  H  S  G  V  E  V  G  P  H  Y  Y  G  F  C  G  W  S  T  E  D  F  *  R  S  *  *  Y  L  G  H  R  *  S  I  D  Q  V  S  T  F  P  S  R  S  I  F  I  *  C  *  E  V  G  S  Y  L  H  S  G  G  G  S  T  S  W  G  A  S  F  Y  Y  I  R  S  G  F  S  V  H  V  *  L  L  E  D  L  S  G  *  V  G  H  P  G  *  P  E  H  S  F  P  P  A  D  *  W  P  V  R  V  H  Y  S  G  P  R  R  H  A  T  G  L  C  F  G  V  W  W  S  M  G  P  V  L  A  F  G  G  I  A  Y  N  N  N  Y  H  S  S  </first_frame>
            <second_frame>  S  R  P  G  S  E  F  Q  G  L  P  I  P  E  W  K  W  D  H  I  T  M  D  F  V  A  G  L  P  R  T  F  R  G  V  D  S  I  W  V  I  V  D  R  L  T  K  S  A  H  F  L  P  V  Q  S  S  F  S  A  E  R  L  A  R  I  Y  I  R  E  V  V  R  L  H  G  V  P  V  S  I  I  S  D  R  G  S  Q  F  M  S  S  F  W  R  T  F  Q  D  E  L  G  T  R  V  D  L  S  I  A  F  H  P  Q  T  D  G  Q  S  E  C  T  I  Q  V  L  E  D  M  L  R  A  C  V  L  E  F  G  G  Q  W  D  Q  F  L  P  L  E  E  L  H  I  T  T  T  T  I  L  A </second_frame>
            <third_frame>   R  G  L  V  V  N  F  R  D  Y  P  F  R  S  G  S  G  T  T  L  L  W  I  L  W  L  V  Y  R  G  L  L  E  E  L  I  V  F  G  S  S  L  I  D  *  P  S  Q  H  I  S  F  P  F  N  L  H  L  V  L  R  G  W  L  V  S  T  F  G  R  W  F  D  F  M  G  C  Q  F  L  L  Y  Q  I  G  V  L  S  S  C  L  A  F  G  G  P  F  R  M  S  W  A  P  G  L  T  *  A  *  L  S  T  R  R  L  M  A  S  Q  S  A  L  F  R  S  S  K  T  C  Y  G  L  V  F  W  S  L  V  V  N  G  T  S  S  C  L  W  R  N  C  I  *  Q  Q  L  P  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39609" stop="40085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPGSEFQGLPIPEWKWDHITMDFVAGLPRTFRGVDSIWVIVDRLTKSAHFLPVQSSFSAERLARIYIREVVRLHGVPVSIISDRGSQFMSSFWRTFQDELGTRVDLSIAFHPQTDGQSECTIQVLEDMLRACVLEFGGQWDQFLPLEELHITTTTILA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="61872" PGL_stop="58962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61872" e_stop="61761"/>
            <exon e_start="61646" e_stop="61622"/>
            <exon e_start="59535" e_stop="58962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.920"/>
          <exon-intron don_prob="0.000" acc_prob="0.857" e_score="0.680"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="61872" e_stop="61761" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61760" i_stop="61647" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.680">
            <gDNA_exon_boundary e_start="61646" e_stop="61622" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="61621" i_stop="59536" i_length="2086"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="59535" e_stop="58962" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61872" stop="61761"/>
              <exon start="61646" stop="61622"/>
              <exon start="59535" stop="58962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATAATATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACCTTTGGCTTTCGGCGGTCATAAAC : GTTTTATTTTTTAATATGAATTTCG : AACCTACTGAAGATATTCTAGCATGATGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGATCGAGATATATTAGTAATGCAAGCATCATCATTAGCTTCTGAAGGCGTCTTTAGTGCAGCAAGGTTTCGACTTGGAGAACATAGGCATTCACTAGCAGCAGACAGCTTGGAGATATCGATATTATTTTGAGATTGGATTAACGCCGAGAGAAGAAATTTGGGTCGTGAACCACTACCTACCAAATTTCAAGATGACGTTGATAAAGTAATGCAGGATTATGGTGACGGCGGGATTGAAGCAATGGAAGATCTTTCTATTCAACCAATTCCCGAACATGTTACTACAGAAATGTTGAATGATTTACGAAGGGATTTACATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACCCTTCCTAGAACGTGGTTGTGTAGATTAAATCTTTTAATACTCTACTAATATTTTTGTAATTGTAATTGTAATTGTAATATAAAATAAATATTAATAAAAATATAGGTTATTCACCTTAATTTGTTTTT</gDNA_template>
            <first_frame> I  Y  N  I  L  N  S  G  V  A  L  F  G  L  W  K  L  D  L  E  L  Q  N  S  I  F  N  F  P  P  L  A  F  G  G  H  K   : R  F  I  F  *  Y  E  F  R :   T  Y  *  R  Y  S  S  M  M  E  K  S  R  Q  R  I  S  K  T  S  T  D  G  S  R  Y  I  S  N  A  S  I  I  I  S  F  *  R  R  L  *  C  S  K  V  S  T  W  R  T  *  A  F  T  S  S  R  Q  L  G  D  I  D  I  I  L  R  L  D  *  R  R  E  K  K  F  G  S  *  T  T  T  Y  Q  I  S  R  *  R  *  *  S  N  A  G  L  W  *  R  R  D  *  S  N  G  R  S  F  Y  S  T  N  S  R  T  C  Y  Y  R  N  V  E  *  F  T  K  G  F  T  W  W  H  Q  L  L  V  K  V  *  *  F  K  I  *  F  K  Q  N  P  S  *  N  V  V  V  *  I  K  S  F  N  T  L  L  I  F  L  *  L  *  L  *  L  *  Y  K  I  N  I  N  K  N  I  G  Y  S  P  *  F  V  F </first_frame>
            <second_frame>  Y  I  I  S  *  I  P  V  L  P  Y  L  V  F  G  N  *  I  W  S  F  K  I  Q  F  S  T  F  H  L  W  L  S  A  V  I  N  :  V  L  F  F  N  M  N  F   : E  P  T  E  D  I  L  A  *  W  R  N  R  G  K  G  F  P  K  L  V  P  M  D  R  D  I  L  V  M  Q  A  S  S  L  A  S  E  G  V  F  S  A  A  R  F  R  L  G  E  H  R  H  S  L  A  A  D  S  L  E  I  S  I  L  F  *  D  W  I  N  A  E  R  R  N  L  G  R  E  P  L  P  T  K  F  Q  D  D  V  D  K  V  M  Q  D  Y  G  D  G  G  I  E  A  M  E  D  L  S  I  Q  P  I  P  E  H  V  T  T  E  M  L  N  D  L  R  R  D  L  H  G  G  T  N  Y  *  *  K  Y  D  N  S  R  F  N  S  N  R  T  L  P  R  T  W  L  C  R  L  N  L  L  I  L  Y  *  Y  F  C  N  C  N  C  N  C  N  I  K  *  I  L  I  K  I  *  V  I  H  L  N  L  F   </second_frame>
            <third_frame>   I  *  Y  L  K  F  R  C  C  L  I  W  S  L  E  I  R  F  G  A  S  K  F  N  F  Q  L  S  T  F  G  F  R  R  S  *  T :   F  Y  F  L  I  *  I  S  :  N  L  L  K  I  F  *  H  D  G  E  I  A  A  K  D  F  Q  N  *  Y  R  W  I  E  I  Y  *  *  C  K  H  H  H  *  L  L  K  A  S  L  V  Q  Q  G  F  D  L  E  N  I  G  I  H  *  Q  Q  T  A  W  R  Y  R  Y  Y  F  E  I  G  L  T  P  R  E  E  I  W  V  V  N  H  Y  L  P  N  F  K  M  T  L  I  K  *  C  R  I  M  V  T  A  G  L  K  Q  W  K  I  F  L  F  N  Q  F  P  N  M  L  L  Q  K  C  *  M  I  Y  E  G  I  Y  M  V  A  P  T  I  S  K  S  M  I  I  Q  D  L  I  Q  T  E  P  F  L  E  R  G  C  V  D  *  I  F  *  Y  S  T  N  I  F  V  I  V  I  V  I  V  I  *  N  K  Y  *  *  K  Y  R  L  F  T  L  I  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59335" stop="59129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DWINAERRNLGREPLPTKFQDDVDKVMQDYGDGGIEAMEDLSIQPIPEHVTTEMLNDLRRDLHGGTNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="81965" PGL_stop="81730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81965" e_stop="81730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="81965" e_stop="81730" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81965" stop="81730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTAAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATACTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  E  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  L  L  L  C  F  L  L  V  Y  L   </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  K  S  S  L  M  S  L  V  L  *  P  R  V  M  V  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  T  V  F  Y  F  E  L  A  D  D  T  Y  S  V  L  V  F  V  L  T  P  Y  F  Y  V  F  F  L  F  I  C  </second_frame>
            <third_frame>   M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  *  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  Q  Y  L  C  L  Y  *  P  P  T  F  M  F  S  S  C  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="83861" PGL_stop="84037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83861" e_stop="84037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="83861" e_stop="84037" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83861" stop="84037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAATCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCT</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  I  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  R  E  S  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  A  N  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="84743" PGL_stop="86388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84743" e_stop="86388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="84743" e_stop="86388" e_length="1646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84743" stop="85073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84950" stop="85508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85034" stop="85823"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85036" stop="85569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85110" stop="85807"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85671" stop="86388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85674" stop="86335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTATCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCCGAGAAAGCCAAGTCATAACCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATTTGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTTTTTGATGTTGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCTGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCATGAAACTTAGCCTCGTATGCATTGACCGACATCCTACCTTAATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCTCAAGTCATAGGTGGTTCCTCTGTTGGTTGACACTCAACATGTGACCTCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCATCAACTCAACACCAAACCGTTCTACTATACACATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATGGGCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTCAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGAGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  *  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  S  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  I  W  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  H  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  C  L  Q  F  T  H  H  L  D  H  F  G  D  H  H  Y  F  D  H  R  V  L  Q  N  D  D  L  F  H  N  H  L  Y  L  *  H  L  E  V  G  N  S  V  L  D  N  T  S  *  C  V  R  S  P  H  I  H  N  T  L  W  V  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  F  L  M  L  M  S  W  *  S  H  L  A  S  L  L  P  P  L  S  R  S  L  P  P  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  R  M  H  *  P  T  S  Y  L  N  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  L  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  S  T  T  F  W  R  S  L  E  T  D  N  S  S  T  Q  H  Q  T  V  L  L  Y  T  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  W  A  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  S  N  W  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  H  L  I  Y  H  L  W  S  R  L  G  W  Q  S  L  I  L  H  L  F  I  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </first_frame>
            <second_frame>  I  Y  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  P  R  K  P  S  H  N  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  F  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  I  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  V  S  S  L  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  A  S  S  R  M  T  T  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  D  L  P  T  S  I  T  L  S  G  F  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  L  K  P  F  *  C  *  C  R  G  E  V  I  W  L  H  S  F  H  L  Y  H  E  V  Y  H  L  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  L  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  G  I  S  G  *  C  M  K  L  S  L  V  C  I  D  R  H  P  T  L  I  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  S  S  H  R  W  F  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  Q  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  Q  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  </second_frame>
            <third_frame>   S  I  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  R  E  S  Q  V  I  T  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  L  T  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  L  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  S  P  V  Y  P  S  P  R  P  F  W  *  P  P  L  L  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  R  *  L  C  F  G  Q  Y  L  L  M  C  P  I  S  P  H  P  *  H  S  L  G  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  *  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  C  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  *  N  L  A  S  Y  A  L  T  D  I  L  P  *  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  S  S  V  G  *  H  S  T  C  D  L  H  H  I  L  A  F  P  *  N  *  *  L  I  N  S  T  P  N  R  S  T  I  H  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  M  G  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  L  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  A  P  D  L  S  S  L  E  *  A  G  V  A  I  P  H  S  A  L  V  H  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85182" stop="85436"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVSSLPITSTILVTTITSTTASSRMTTSSITTSTSNIWRSVTLFWTIPLNVSDLPTSITLSGFKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86138" stop="86386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIHTRSHSGCMLYLSNWRCWCRKHWRCLTLIRQPTKISEHLIYHLWSRLGWQSLILHLFISPSSPSLITSSVGGGVTALVSDG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85983" stop="86222"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTEKFMLIICHYGPVVRRGNVPMSNEASIRGAIVAACCTSQTGGVGAENTGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="87391" PGL_stop="87156"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87391" e_stop="87156"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="87391" e_stop="87156" e_length="236"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87391" stop="87156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAATGAACCTAATTCCCAAATGAGTATGATGAGGAGGCGTGAGTCCTCATTGATGAGCTTGGTGTTGTAACCAAGGGTTATGGTAATTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATATATATTGTTTTCTATTTTGAGTTGGCCGATGATACCTACTCAGTACTTGTGTTTGTACTGACCCCCTACTTTTATGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> *  *  T  *  F  P  N  E  Y  D  E  E  A  *  V  L  I  D  E  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  I  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  C  V  C  T  D  P  L  L  L  C  F  L  L  V  Y  L   </first_frame>
            <second_frame>  N  E  P  N  S  Q  M  S  M  M  R  R  R  E  S  S  L  M  S  L  V  L  *  P  R  V  M  V  I  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  Y  I  V  F  Y  F  E  L  A  D  D  T  Y  S  V  L  V  F  V  L  T  P  Y  F  Y  V  F  F  L  F  I  C  </second_frame>
            <third_frame>   M  N  L  I  P  K  *  V  *  *  G  G  V  S  P  H  *  *  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  P  T  Q  Y  L  C  L  Y  *  P  P  T  F  M  F  S  S  C  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 161 chains have been computed
$ 
$ memory statistics:
$ 80288 bytes spliced alignments in total
$ 38 spliced alignments have been stored
$ 2112 bytes was the average size of a spliced alignment
$ 19192 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1599 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 180 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:30:37
-->
