<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:34:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344226" ref_strand="+" ref_description="SGN-U344226        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 2e-07, score=59.3)">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="3858" stop="2805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3558" g_stop="3140" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-U344226" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3558" e_stop="3140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAATTAAGGAATAAAAG-AAAAAACAAAATAAAAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAAAATCATATATACCCCTAAATA--ATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGATATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGACATATATGAGCCACTTTTGTAACGAGGGGTATATCAGCTTCAAATGACAAAATTGAGGG</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTTTTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324136" ref_strand="+" ref_description="SGN-U324136        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | violaxanthin de-epoxidase precursor, putative (AVDE1), similar to EST gb:N37612 | chr1:2707427-2709534 FORWARD | Aliases: F22O13.3, F22O13_3(evalue: 4e-32, score=134) genbank/nr: gi|1463123|gb|AAC50031.1| violaxanthin de-epoxidase precursor [Nicotiana tabacum] (evalue: 2e-89, score=331)">
      <seq>gcacgagccacaacaactctttatactcaacgttcaatcttcatagcactctatttacatgaggttggagttggtggtcattcaattgaataatggcgcttgcccctcattcaaacattctgtgcaatcatgaggccatcaaatgtcaagttggatcaaggcttcagagtcatacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgcagaaatcttctagaatatgttgtggtttggattctagaagtctgcaactatcatcacgggggaaacaaaatctttcttctgcacatagaattaaccagaatgtacctaagggaaatacaatatggaaatttccagaagatgtagctttgatggtcttgaagaaatggggccaattggccaaaacagcaattgtaactatatttattttgtcagttgcttcaaaggctgatgccgttgatgctctcaaaacttgtacttgcttactgaaagagtgcaggtaatttgcagatgttactaaagtatgccggatagagcttgcgaagtgcatctcanaccctgcatgtgcagctaatgttgcctgtctccaaacatgcaacaatagacctgatgaaacggaatgtcagataaaatgtggtgatttgtttgaaaacagtgttgtagacgagttcaatgagtgtgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4569" stop="7468"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4869" g_stop="4931" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5835" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="371" r_length="308" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5967" g_stop="6163" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="568" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6164" i_stop="6931" i_length="768">
            <donor d_prob="0.935" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6932" g_stop="7028" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="665" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7110" g_stop="7168" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="724" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U324136" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4869" e_stop="4931"/>
          <exon e_start="5528" e_stop="5835"/>
          <exon e_start="5967" e_stop="6163"/>
          <exon e_start="6932" e_stop="7028"/>
          <exon e_start="7110" e_stop="7168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAAATCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGTGAGTTTGATATTATTTTGTTCTGTTGCTTCTCGTTTACTACTTTCCGAAGGAATGTGGGGGTCTAGCTCTGTCCTCTGCATCCTTTTCATCCTCTTCTTTCTCTTTGCTGACAGAAGTCCTCTATATAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCGGTATACTTCCTTCTACCGAGCTGCCAATATATTTTGTTTTGCTACCCTTCTTATGTTTCTTTCAAGAGCTTTGAGCTTGTTTACTTCTATTACATATAAAAATACACAAGGAATGTGAAATTGGTTCTTGTTTGTACACTGTGGATTGTCGTCCTGAATTAATAATTGAGTGCAGTGGTAAGGATGTCAAATTCAGTTTTCACGGACATAGACTGTCTCTAGCTTTTTATGATCAACTGTCCATAAGTTCTCGATTCTAGTCGTAATTATCGATAAAATCAAGTTTTAAGCATGTTCAAAGTGAAACATAACCCCAACCGTAATGCTTTTCCATCTATTCCTTTCCGATTTTGAGACTGTTAAGACTTTCTGTGTTCTAATTAGGCCATGAGAATAGCAGTATGAATTTGACTTATTTGGAGCAAGTTTTTTTAGACCTTTACGGTGGTAAAAGCAACTGATACTGTTGCTGTGCTAGGGATGCAGGAAAGTTTTTACTATTATTCCAATTTCCCTGAATCTCAAAAGATATCTTTTTGTCTCGTGCCACAATTTGATGAACTTGTAAAGATATAGCCACACAAATGTCTTAGGTTTATTTTAGACCACAAAATTCACAAGTCTTTTTTTCTTTCTTAAAGTTTTTGCTAAGTCAAACTGTCCAACAAAAATTAGGACGGAGGGAGTAGTATTGATGAGTTTCAACCTCCATCCCTAACATGCATGTCTGATACTCTTAGGTGACTTATTAAAGTATTATGCTTTCAGGATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAGGTGTCTACAAACATCTTATTAAAACTGAATATTGATTTGATCACATTTATGGAATATTAATATGTTGGAATATGGGTGCAGATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGT</genome_strand>
        <mrna_strand>GCACGAGCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG...................................................................................................................................GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCTTGCGAAGTGCATCTCANACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG.................................................................................ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337966" ref_strand="+" ref_description="SGN-U337966        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | violaxanthin de-epoxidase precursor, putative (AVDE1), similar to EST gb:N37612 | chr1:2707427-2709534 FORWARD | Aliases: F22O13.3, F22O13_3(evalue: 2e-45, score=148) genbank/nr: gi|1463123|gb|AAC50031.1| violaxanthin de-epoxidase precursor [Nicotiana tabacum] (evalue: 4e-104, score=342)">
      <seq>tcaacgttcaatcttcatagcactctatttacatgaggttggagttggtggtcattcaattgaataatggcgcttgcccctcattcaaacattctgtgcaatcatgaagccatcaaatgtcaagttggatcaaggctgcagagtcagacaagatttagctggggtagagcagattactttggtagtatagtcctagtgaaaatttgttccagaagacagatacctacatacttgcagaaatcttctagaatatgttgtggtttggattctagaagtctgcaactatcatcacgggggaaacaaaatctttcttctgcacatagaattaaccagaatgtacctaagggaaatacaatatggaaatttccagaagatgtagctttgatggtcttgaagaaatggggccaattggccaaaacagcaattgtaactatatttattttgtcagttgcttcaaaggctgatgccgttgatgctctcaaaacttgtacttgcttactgaaagagtgcaggatagagcttgcgaagtgcatctcaaaccctgcatgtgcagctaatgttgcctgtctccaaacatgcaacaatagacctgatgaaacggaatgtcagataaaatgtggtgatttgtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="4595" stop="7431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4895" g_stop="4931" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5528" g_stop="5835" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="345" r_length="308" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5967" g_stop="6133" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="512" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6134" i_stop="6931" i_length="798">
            <donor d_prob="0.787" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6932" g_stop="7028" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="609" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7110" g_stop="7131" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="631" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U337966" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U337966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4895" e_stop="4931"/>
          <exon e_start="5528" e_stop="5835"/>
          <exon e_start="5967" e_stop="6133"/>
          <exon e_start="6932" e_stop="7028"/>
          <exon e_start="7110" e_stop="7131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACGTTCAATCTTCATAGCACTCTATTTACATGAGGTCAGTTATTGGGATTTATATTTATATTCACATACTCATCTTTTACTCTTTGAGTATATTATGATTCTGCATTTGACAATTTAACTTGTCAATTTTAGCTTTGTAAATGTGCTGCTCCGTCTCAATTTATGTGATACAAGTCATACAAATGATCCCTTTTACTTAAAATTTATGCTAACTCAAATGGTGTCACACTAATTGGGACGGAAGGAGTAGTATTTAATGTTAAACTGAAGGTGAATAGAGAGGAACATGAAAGGGTGAGTTCTTGATTGATTGTGAACTATGCACCAAAACCTTTAGTTGGAACTGAAGATGAATGTGGGAAGTTGAAAATTTATCTGCATTTCAATATTTGACCTTAAATCCTACTTATGTATCATAGAATTTCAATCAACTAGTGAATGTGGAAAAATTCTTGATTGTGAATCTGATAGTAAGATTTGATATGTGCTGACGTGCAACACACACGCACACACGTAGAATATGCATCTTGGACCAATCAGTCTGATATGTGCGCGTGTGTGTTGCACAGAGTAGATATCAATCAGAAAGATTTAGAAGATAGCACAATCTGATATACTTCATTTCTATAGGTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAGGTGAGTTTGATATTATTTTGTTCTGTTGCTTCTCGTTTACTACTTTCCGAAGGAATGTGGGGGTCTAGCTCTGTCCTCTGCATCCTTTTCATCCTCTTCTTTCTCTTTGCTGACAGAAGTCCTCTATATAGGGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCGGTATACTTCCTTCTACCGAGCTGCCAATATATTTTGTTTTGCTACCCTTCTTATGTTTCTTTCAAGAGCTTTGAGCTTGTTTACTTCTATTACATATAAAAATACACAAGGAATGTGAAATTGGTTCTTGTTTGTACACTGTGGATTGTCGTCCTGAATTAATAATTGAGTGCAGTGGTAAGGATGTCAAATTCAGTTTTCACGGACATAGACTGTCTCTAGCTTTTTATGATCAACTGTCCATAAGTTCTCGATTCTAGTCGTAATTATCGATAAAATCAAGTTTTAAGCATGTTCAAAGTGAAACATAACCCCAACCGTAATGCTTTTCCATCTATTCCTTTCCGATTTTGAGACTGTTAAGACTTTCTGTGTTCTAATTAGGCCATGAGAATAGCAGTATGAATTTGACTTATTTGGAGCAAGTTTTTTTAGACCTTTACGGTGGTAAAAGCAACTGATACTGTTGCTGTGCTAGGGATGCAGGAAAGTTTTTACTATTATTCCAATTTCCCTGAATCTCAAAAGATATCTTTTTGTCTCGTGCCACAATTTGATGAACTTGTAAAGATATAGCCACACAAATGTCTTAGGTTTATTTTAGACCACAAAATTCACAAGTCTTTTTTTCTTTCTTAAAGTTTTTGCTAAGTCAAACTGTCCAACAAAAATTAGGACGGAGGGAGTAGTATTGATGAGTTTCAACCTCCATCCCTAACATGCATGTCTGATACTCTTAGGTGACTTATTAAAGTATTATGCTTTCAGGATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAGGTGTCTACAAACATCTTATTAAAACTGAATATTGATTTGATCACATTTATGGAATATTAATATGTTGGAATATGGGTGCAGATAAAATGTGGTGATTTGTTTG</genome_strand>
        <mrna_strand>TCAACGTTCAATCTTCATAGCACTCTATTTACATGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAAGCCATCAAATGTCAAGTTGGATCAAGGCTGCAGAGTCAGACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG...................................................................................................................................GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG.................................................................................ATAAAATGTGGTGATTTGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343404" ref_strand="+" ref_description="SGN-U343404        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | violaxanthin de-epoxidase precursor, putative (AVDE1), similar to EST gb:N37612 | chr1:2707427-2709534 FORWARD | Aliases: F22O13.3, F22O13_3(evalue: 4e-134, score=474) genbank/nr: violaxanthin(evalue: 1e-161, score=572)">
      <seq>cttgacgagactgaatgtcagataaaatgtggtgatttgtttgaaaacagtgttgtagacgagttcaatgagtgtgcagtctcccggaagaaatgtgtacctcgtaaatctgatgttggtgactttcctgtgcctgatcccagtgttctcgtccaaaagtttgacatgaatgattttattggaaaatggtacatcactcgcggtttgaatcccacatttgatgtttttgattgtcaattgcatgagttccatacagaaggaaacaaacttgtgggaagtctgacttggagaatagggacacctgatggaggatttttcactcgatccgcagtgcaaaaattcgtgcaagatccaaagtatcccgggatactctacaatcatgataatgagtatcttcactaccaagatgactggtacattttgtcatccaaagttgaaaacagtccagatgattacatatttgtgtactataagggcagaaatgatgcatgggatggatatggtggttctgtactttatactagaagctccgttttgcctgaaacgattatacctgagttgcaaattgcagctcaaaaagttggtcgtgatttcaacactttcataaaaacagacaatacttgtggccctgagccaccccttgttgaacggttagagaagaaagtggaagaaggagagcggacaatcataaaagaagtcgaggaaatagaagaagaagtcgagaaggtgaaggaaaaagaagtcagcttattcagtagactgttcgaaggtttcaaagagctgcaacaagatgaagaaaactttataagagagctcagcaaagaagaaatggatattttggatggacttaaaatggaagcaactgaagtagaaaaactctttggaaatgcattaccaataaggaaattaaggtaaatattgttatgagagttatattagaaaccatccacatacagaatgtatagattgtatttaatttactttttatctttttgtctggaatagattgcttatatatcatgtaatgctccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="6798" stop="8510"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7008" g_stop="7028" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="0.810"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81">
            <donor d_prob="0.976" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7110" g_stop="7501" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="413" r_length="392" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7502" i_stop="7582" i_length="81">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7583" g_stop="8202" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="1033" r_length="620" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1034" polyA_stop="1052"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U343404" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1033</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7008" e_stop="7028"/>
          <exon e_start="7110" e_stop="7501"/>
          <exon e_start="7583" e_stop="8202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGATGAAACGGAATGTCAGGTGTCTACAAACATCTTATTAAAACTGAATATTGATTTGATCACATTTATGGAATATTAATATGTTGGAATATGGGTGCAGATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTGGTATCTCACTTCCTACAGTCTCCATATTGTTTGTACTTGCATTGTGATTCACCTAAACACGTTAATTGATTTTCTCTGCAGGTATATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</genome_strand>
        <mrna_strand>CTTGACGAGACTGAATGTCAG.................................................................................ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTG.................................................................................GTACATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320435" ref_strand="+" ref_description="SGN-U320435        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, predicted protein, Arabidopsis thaliana | chr3:20122131-20123922 REVERSE | Aliases: F24B22.270(evalue: 9e-64, score=241) genbank/nr: gi|15232478|ref|NP_190999.1| hypothetical protein [Arabidopsis thaliana] gi|11280866|pir||T47590 hypothetical protein F24B22.270 - Arabidopsis thaliana gi|6822077|emb|CAB71005.1| putative protein [Arabidopsis thaliana](evalue: 7e-62, score=241)">
      <seq>tcaaactacctttgttgctgtctaataacattattagtaactttattataagccaatccaaacactctttgaagagtaaagtgtagtctacaactgaacagtctctctgagtgtagtctacaactgaacagtgtctccgagccatgtcttacattccaccacacaagaggcacacaaagggttcaccgtcgccggaaccaactccggcaccggaatcagtgctacctgccttgagaaaaagcctgaatttcaagagaaaggaaaacattcggctcgagatccgttatgctcatggtgcagttaggaaatggttccctgttggtttgactcatttttcatctcttgtcaaccttcaacctctttctatccatcaaaaatctaacgaaaatcctcttcgtttggtgctaatgcaaggttgcaatggaggaacgaatgatgagccatggcgtttggtggctaaaaatgtgatggaagacttacttttgtcatttcaacatgtcaaatctgtaatggaggaatctaatatggaagaagaatcaaagccgagtctagttgctcgttttggaagaattctctttcatgggatttctgcaaaaagtcaagaatccctcaatagtaacctattaaaggaaactaccttgaggcaaatgagaaaatctttctataccagtgttcctctttcatacatggaatatatacgaaaccttgcagttgaaaaacttgacttacaatatgtggaggagaaggaattatactacgtcaagctttcagacaacatgcgcgctgattcaactgtcacctgcaaatgtacggtggtcaaggatcaggagaaaattcagctccataagattgagctgaaccaagtacgcaacatggttgcagacatgagctgtcctggcaaaagcttagacctgaggttgatgttaaacaccaagaaaatcatgacgggtttatctgatgaggagatcaatgaaattaaaagtcttatcggttcagctgtgttggactctgaagttaagggtgggctgagatggccctttggcgaggattcttcagggagtcgatatgctgttaccggtgtctggcacacaactgcaaaatcgtatgggaattcgtcaattaggcttaagcttagacatgcagatcgatatgatttcagatcttcaactggtgaggttgcacaggaagttaacctgaaaatgtctgggattttatcccaattgcaggaggaaacgattgacgaaaacctggtgcttaaaatgctggaagacaacttgaagttaatctgggatcactgtttggatgatggttcttcaagctgatgaccatatttcgcggtccttcactctctttgcaaaatatctgcagaaactcacaagctatggtcgtttggtgaagaaagttaccttttgtagtttgcagtggtggaatgtatagatggataactgaattgttaaactcaaaatgttgaatgctgtttgcagtatattgttttgcgtatggaatgaaatgaaccaaggcctctgatggtagcggcatcagtaaaggaatagttttgtttttgtaatggatcgaacttcttagttaacaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="11878" stop="8043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11578" g_stop="11165" g_length="414"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="414" r_length="414" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.908" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11055" g_stop="10887" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="583" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10630" g_stop="10450" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="764" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10371" g_stop="10288" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="765" r_stop="848" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10287" i_stop="10094" i_length="194">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10093" g_stop="9986" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="849" r_stop="956" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="9985" i_stop="9173" i_length="813">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9172" g_stop="8903" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="957" r_stop="1226" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="8902" i_stop="8705" i_length="198">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="8704" g_stop="8345" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1227" r_stop="1586" r_length="360" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1587" polyA_stop="1605"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-U320435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1586</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11578" e_stop="11165"/>
          <exon e_start="11055" e_stop="10887"/>
          <exon e_start="10630" e_stop="10450"/>
          <exon e_start="10371" e_stop="10288"/>
          <exon e_start="10093" e_stop="9986"/>
          <exon e_start="9172" e_stop="8903"/>
          <exon e_start="8704" e_stop="8345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTACCTTTGTTGCTGTCTAATAACATTATTAGTAACTTTATTATAAGCCAATCCAAACACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAGGTACTACTACTTTTTTGTTCTTTTTCTGCAAAATCTAAATTTTTATGTGTATTTGATAAATAAATGCTTCCAGAGTTTGGGTTTCTAAATCCTTTTTTCTATTTTTGAGGTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGGGTTAGTATTGTCCATTTCTCATAATCACTTTTATTCAAATCCATTTTATTATACTACACAATTTTCTTGTCTGGTAAAGCAAACTACAACTTCTGTAAATCGCTGACTTATTTTACTTTGACATGTAACTCTTTTAACTTTTCTCCTACGTGTTAGAATGTTTCTTCTTTTGGCGATGTCTGAAGCACTACTTTGTTGAGTCGATTAAATCCAGTGTGTTTAACATGTAATCCTCCTCAAATTCTCTGTCTTGTAGGATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAGGTAATATTTTCATGTTTCTAACAAGTTTCTTTCTCTTTATGTGTTGCTTCTTTTAGTAGTATCCCTTGTGCTTTGTAGCTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAATTCAGCTCCATAAGGTTACTTCTCCATTCCCTGGTTCTTAATGAACTTGCTGTAAGATGCCCAATTAACTGTTTATTTTCCAACTAGAAAAACAACATTAATTGTTGTCATGAACATATTTACCTCCTCTTACCTATCTTTTGCATGCTTTACTTCTTGCAGTTTGTCATTCCTTATCAATCTTCTGACGCTACACTTTTTCTTTTAGATTGAGCTGAACCAAGTACGCAACATGGTTGCAGACATGAGCTGTCCTGGCAAAAGCTTAGACCTGAGGTTGATGTTAAACACCAAGAAAATCATGACGGGTTTATCTGTAAGTTACTTCATTGAGGATCAAATATCTTGAAAGTCATAGGTCGTATACTCATACTTAGAAGTTTCACCCAATATTTGATATCTTCTGAACTGGAGACATGTTTATTCAGTTACTCTTGGTTCAAATTTCTTGTTTTTTCATGTTTCGTCGATTTGGGAGAGGGTTTGATTTTTGTGAACAGCAAAATGAATAGCCTATTGGGTTGACCAGTAGGGTTTAAAATGCTCAAATACTGTGCGTTATTGGAGATCTCTGGTAACTGGATTGAGCTAGATACAAATCATTTCTACGATGAAATACAAAGGAGGGTAAGTAGAAGAGAGAAAAAAAGGAAAAAGGATACAGAGGCAAAAAGTAGAAATGAAGATATTCTTCACATGCATTCAGTGTTAAGGTGGTTACTTAATGAATTTGATTTGTTTTGGGATCTCTAACTACCTACACTTAATAAGATTTAAGGGCTTCGAAAACCCAACCAAATATAAAGTTACACCCCAAGTAAGCAGACTTTCAAGTCTAATGTATTTAAATTGTCTAGTCATATAGTGTACCAGGGATGATACTTTTGATATTTACATTGGTAAGTACAGGTATTAACAAAACCCATAGATTTTAGAGTACCGATGAAATTTGTCTGCACTTTGGATGTACATATTTTACCTCCATTCCAGCGAAGAAGAACCTTTTTCTGTGTGAATTATTTTATTTGCACTTCAATTTCCATCTTCTCATCATGACTTCTGCACTCTCAACTGAAAGGACACCAGTAGTGTTTGTGTTCTTATTGTATCACTCTCTGCTTTTTCCCAGGATGAGGAGATCAATGAAATTAAAAGTCTTATCGGTTCAGCTGTGTTGGACTCTGAAGTTAAGGGTGGGCTGAGATGGCCCTTTGGCGAGGATTCTTCAGGGAGTCGATATGCTGTTACCGGTGTCTGGCACACAACTGCAAAATCGTATGGGAATTCGTCAATTAGGCTTAAGCTTAGACATGCAGATCGATATGATTTCAGATCTTCAACTGGTGAGGTTGCACAGGAAGTTAACCTGAAAATGTCTGGGATTTTATCCCAATTGCAGGTAGATTTTCTTCTAATGAGCAATTATGTCTATTTCTATTGGTAATACATTTGGGCAAAACATCATCCAGTTCAGCTGGAGAAACAAAATTCAATGACTGATTCCAATCCAGTTGATAAGCCTTTCTGTTTCTTTTTCTACTTGACCCCTTCACTACTGAAATAATTAATTTAATACATTTTCTTACCTAAAATGCAGGAGGAAACGATTGACGAAAACCTGGTGCTTAAAATGCTGGAAGACAACTTGAAGTTAATCTGGGATCACTGTTTGGATGATGGTTCTTCAAGCTGATGACCATATTTCGCGGTCCTTCACTCTCTTTGCAAAATATCTGCAGAAACTCACAAGCTATGGTCGTTTGGTGAAGAAAGTTACCTTTTGTAGTTTGCAGTGGTGGAATGTATAGATGGATAACTGAATTGTTAAACTCAAAATGTTGAATGCTGTTTGCAGTATATTGTTTTGCGTATGGAATGAAATGAACCAAGGCCTCTGATGGTAGCGGCATCAGTAAAGGAATAGTTTTGTTTTTGTAATGGATCGAACTTCTTAGTT</genome_strand>
        <mrna_strand>TCAAACTACCTTTGTTGCTGTCTAATAACATTATTAGTAACTTTATTATAAGCCAATCCAAACACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG.............................................................................................................GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG................................................................................................................................................................................................................................................................GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAG..............................................................................CTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAATTCAGCTCCATAAG..................................................................................................................................................................................................ATTGAGCTGAACCAAGTACGCAACATGGTTGCAGACATGAGCTGTCCTGGCAAAAGCTTAGACCTGAGGTTGATGTTAAACACCAAGAAAATCATGACGGGTTTATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGGAGATCAATGAAATTAAAAGTCTTATCGGTTCAGCTGTGTTGGACTCTGAAGTTAAGGGTGGGCTGAGATGGCCCTTTGGCGAGGATTCTTCAGGGAGTCGATATGCTGTTACCGGTGTCTGGCACACAACTGCAAAATCGTATGGGAATTCGTCAATTAGGCTTAAGCTTAGACATGCAGATCGATATGATTTCAGATCTTCAACTGGTGAGGTTGCACAGGAAGTTAACCTGAAAATGTCTGGGATTTTATCCCAATTGCAG......................................................................................................................................................................................................GAGGAAACGATTGACGAAAACCTGGTGCTTAAAATGCTGGAAGACAACTTGAAGTTAATCTGGGATCACTGTTTGGATGATGGTTCTTCAAGCTGATGACCATATTTCGCGGTCCTTCACTCTCTTTGCAAAATATCTGCAGAAACTCACAAGCTATGGTCGTTTGGTGAAGAAAGTTACCTTTTGTAGTTTGCAGTGGTGGAATGTATAGATGGATAACTGAATTGTTAAACTCAAAATGTTGAATGCTGTTTGCAGTATATTGTTTTGCGTATGGAATGAAATGAACCAAGGCCTCTGATGGTAGCGGCATCAGTAAAGGAATAGTTTTGTTTTTGTAATGGATCGAACTTCTTAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324767" ref_strand="+" ref_description="SGN-U324767        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>agaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="18192" stop="17347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17892" g_stop="17650" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="244" polyA_stop="264"/>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-U324767" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324767" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17892" e_stop="17650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATTTGTGCGGAAAACTAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGAAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGATTTCCACGTA</genome_strand>
        <mrna_strand>AGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345812" ref_strand="+" ref_description="SGN-U345812        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 2e-39, score=159) genbank/nr: gi|77548751|gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] >gi|62701868|gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa (japonica cultivar-group)] (evalue: 1e-101, score=372)">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="23861" stop="22454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23561" g_stop="22754" g_length="808"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-U345812" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23561" e_stop="22754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAAAAGTCCTTGTATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAATGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTCTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330105" ref_strand="+" ref_description="SGN-U330105        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G23160.1 | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50 (evalue: 3e-26, score=115) genbank/nr: putative(evalue: 9e-48, score=192)">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="24520" stop="23272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24220" g_stop="23572" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-U330105" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24220" e_stop="23572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCATCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTAAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGAATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAATCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAAAAATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340257" ref_strand="+" ref_description="SGN-U340257        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 2e-113, score=411)">
      <seq>tttgaggcctggtggtgaatttcagggattacccattccggagtggaagtgggaccgcattactatggattttgtggctggtctaccgaggacttctagaggatttgatagtatttgggtcatcgttgatcgattgaccaagtcagcacatttccttttcgttcaatcttcatttagtgccgagaggttggctcgtatctacattcgggaggtggttcgacttcatggggtgccagtttctattatatcagatcggggttctcagttcacgtctagcttttggaggacctttcaggatgagttgggcacccaggttgacctgagcacagctttccacccgcagactgatggtcagtcagagcgcactattcaggtccttgaggacatgctacgggcttgtgttttggagtttggtggtcaatgggaccagttcttgcctttggcggaatttgcatataacaacagctacaattctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="39308" stop="40385"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39608" g_stop="40085" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="479" r_length="479" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U340257" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39608" e_stop="40085"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGGCCTGGTAGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCACATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTTTAGAGGAGTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCTGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCATGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCATAGCTTTCCACCCGCAGACTGATGGCCAGTCAGAGTGCACTATTCAGGTCCTCGAAGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGAGGAA-TTGCATATAACAACAACTACCATTCTAGCA</genome_strand>
        <mrna_strand>TTTGAGGCCTGGTGGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCGCATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTCTAGAGGATTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTTTCGTTCAATCTTCATTTAGTGCCGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCACGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCAGGTTGACCTGAGCACAGCTTTCCACCCGCAGACTGATGGTCAGTCAGAGCGCACTATTCAGGTCCTTGAGGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGCGGAATTTGCATATAACAACAGCTACAATTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343276" ref_strand="+" ref_description="SGN-U343276        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|47900689|gb|AAT39288.1| putative transposase [Solanum demissum] (evalue: 1e-37, score=159)">
      <seq>atatataataatcttaaattccggtgttgccttatttggtctttgaaaatttgatttgaagcttcaaaattcaactttcaacttttcacgttcggctttcggcggtcataaacgtctacttttttaagtagacgttcgaacctactgaagatattctagcatgctggagaaatcgcggcaaaggatttccaaaactacaaccgatggctcgagaatatattagcaatgcaagcgtcgtcagtagcttcggaaggcgtctttagtgcagcaaggtttcaacttggagaacatagacattcattagcagccgacagcttggatatatcggtattattttgagcttggattaatgccgagagaagaaatttgagtcgtgaaccaccaccgaccaaatttcaagatgacgttgatgaagtaatgttggattatagtgacgacgagattgaagtaatggaaaatctttctattcaaccaattcccgaacatgttactaaggaaatgttgaatgatttacgaagagatttatatggtggcacgaactattagtaaaagtatgataattcgagatttaattcaaacagaacccttcctagaaggtgggctgtgtaaattaaatcttttaatactctactaatatttttgtaaatgtaattgtaatatcaaataaatattaataaaaatataggctattcgccttaatttattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="-" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="62172" stop="58692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61872" g_stop="61761" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61760" i_stop="61647" i_length="114">
            <donor d_prob="0.991" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61646" g_stop="61622" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="138" r_length="25" r_score="0.680"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61621" i_stop="59536" i_length="2086">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.857" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59535" g_stop="58962" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="708" r_length="570" r_score="0.911"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="-" ref_id="SGN-U343276" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61872" e_stop="61761"/>
          <exon e_start="61646" e_stop="61622"/>
          <exon e_start="59535" e_stop="58962"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATAAT-ATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACCTTTGGCTTTCGGCGGTCATAAACGTTGGTACATTCGTTCCAATTTTTATTTTACATTTCATTTATATTTAAATAATTATTTATTTTTTTTCTAATTTATTATTTGCATTATATTTTCCGTATTATATATAATCTCACGTTTTATTTTTTAATATGAATTTCGGTAAAAATATTTTTCAAAAAGGAAAGGGGGAAAAAGTGCATTAGAGCGTGTAAAAAATATTTGTAACTTTACATCCTCCGATAATGCAAAAACCGGTAGTTCTTCTATATCAAAAACTAAAAAATCTACTATATTAAGAATAAATACGGTTGATTATACACATGTTGATGATACGATTTTTAATATTGATAGTAATTCAGGATTAGATCCTTATCATGAACATTTACAACGTCGCTTTGGTAATTTTGATGAGGATTTGCCTAGTGATAATGATAATGATATTGATAATTATACTGATATGCCTACTTTTGATGATGATGATGATGAAACTGAGTCACCTACGACTACTAATACTCCCAGTCCCGCTCGCTTTCTTTGTCCTGCCCATGTTCCCCTAGTACATCCTAGGCCTAAGGTAGAACGTGTTAAAAAAAAGGTTGTTTGACAATTTATGACACAAAATGAAGATAATACACAAGCTATTTGTAATAAATGTAAACATAGATTAAATCATAAAACTGTTGGTAAATATAGCGGGACGGGACATTTGAGTAGTCATTTGCTGTCTTGTTGTAAAAATGAATTTTTGCATGTTAAAGCGGTAGCGGAAGCTAAAAAAAATCGGTACCCCCCTTCCTGAAAATGTAGGAGTAGGCAGCTCTAACATGGTACAAACACAATTAAATTTGTCTAATGTTTCAAGCTCTAGTTTACCACTTTCATATAGTAGAGAAAAAGATCTTGAAGAACTAGCTAAAATGATATTGTTATGGGTTTGCCATTTAGTTTTGCTTAAAATTCCGATTTTATACATTATATTCAAATTGTATATAATCCATATTTTAAAGATTTTGCTAGAAATACAATAAAAAAAGGTTTTATTTGATTATCATGCATAACATTTGCAATATCTTCGTTGTTTATTTTATTATAATACTTGTAAAATAGCTATTACTTCTGATATGGGTCGTAGTGTAAACGGTAACGATTATTTGACTGTTACTGCACATTGGATTCATGAAAATTGGTATATGCAAAAAAAGAATTTTAGGTTATAAATGTTGTCAAATGCAAGAAAATCGGTAGTTATATTGCTCAAACTATTTTAGATATTTTACAAAGTTATGGAATATGTGATAAAATAAGTAGTATAACCTTAGATAATGCTTCAAGTAATAATGTTACTGTTGAATATTTAAAACCTACACTTTGTCCTTTATATGGTGATAATTATCATATTAGGTGTACTGCACAAATATATAATTTGATTGTTAGAGATGGTGAACATATGTATGATAACGGATATATGAAAGTTGAAAATGCATGTCATTTAATATTTAAATGTCAAGTTAAGTCTAGGCGTAAAGATTTTTAAAATTGTTGTTTTGAAAATAATCTTCCGCCTAGAAAAATTCCAAAAACAGTGGCTACTAGATGGAATACTCTATATGAAATGCTTGTAGTAGCTTATCAATATTGAATACCCTTACAAATGGTTTTGAATGCCCATAATTCTGATATGACATATAGACTAGATGACAATGATTGGCGTGATATAAATGAACTTATAGATTTCCTAAAAGTTTTTTACTTAACTACAAAAAGAATATTTGTACTTTATAGTGCATCAACTTGTACTGTTTTGTCTGATATTTGTATGATTTCTTCTAAATTATATAAATTTAAAAATAAACCAAGATTTCAACAAACCATTGAAAAAATAATTCTAAAATTTAAAAAATATTATATTCCTATTCCATAAATTTATTTAACTGCATGTTGTTAAACCCTAAGTATAAAGATGTAGGTGCATCAAGAATGGTTGAAAAAATGTATTTTAACTTAGATATTAATGATGTATTAGAAGAAATTCCTAGTTGTCAACAAGTTAAAGATAACATAAAAACTAAAGCTAGAAAATTGTATGATTTATATAATGCTAATATAAATTTATCAAGTGAAAATGAACCTCAAAGCTCTTGGAGTAGATTTGATGAAAATAATATTGATGGTTATTTACAGGATTATCTTGAACTTTCTCACGATAATAGAAATGATTTTGATGCCTATGTTAATCAAAATATAGAACCTACTGAAGATATTCTAGCATGATGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGATCGAG-ATATATTAGTAATGCAAGCATCATCATTAGCTTCTGAAGGCGTCTTTAGTGCAGCAAGGTTTCGACTTGGAGAACATAGGCATTCACTAGCAGCAGACAGCTTGGAGATATCGATATTATTTTGAGATTGGATTAACGCCGAGAGAAGAAATTTGGGTCGTGAACCACTACCTACCAAATTTCAAGATGACGTTGATAAAGTAATGCAGGATTATGGTGACGGCGGGATTGAAGCAATGGAAGATCTTTCTATTCAACCAATTCCCGAACATGTTACTACAGAAATGTTGAATGATTTACGAAGGGATTTACATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACCCTTCCTAGAACGT-GGTTGTGTAGATTAAATCTTTTAATACTCTACTAATATTTTTGTAATTGTAATTGTAATTGTAATATAAAATAAATATTAATAAAAATATAGGTTATTCACCTTAATTTGTTTTT</genome_strand>
        <mrna_strand>ATATATAATAATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGAAAATTTGATTTGAAGCTTCAAAATTCAACTTTCAACTTTTCACGTTCGGCTTTCGGCGGTCATAAAC..................................................................................................................GTCTACTTTTTTAAGTAGACGTTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACTGAAGATATTCTAGCATGCTGGAGAAATCGCGGCAAAGGATTTCCAAAACTACAACCGATGGCTCGAGAATATATTAGCAATGCAAGCGTCGTCAGTAGCTTCGGAAGGCGTCTTTAGTGCAGCAAGGTTTCAACTTGGAGAACATAGACATTCATTAGCAGCCGACAGCTTGGATATATCGGTATTATTTTGAGCTTGGATTAATGCCGAGAGAAGAAATTTGAGTCGTGAACCACCACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGTTGGATTATAGTGACGACGAGATTGAAGTAATGGAAAATCTTTCTATTCAACCAATTCCCGAACATGTTACTAAGGAAATGTTGAATGATTTACGAAGAGATTTATATGGTGGCACGAACTATTAGTAAAAGTATGATAATTCGAGATTTAATTCAAACAGAACCCTTCCTAGAAGGTGGGCTGTGTAAATTAAATCTTTTAATACTCTACTAATATTTTTGT-A----AA-TGTAATTGTAATATCAAATAAATATTAATAAAAATATAGGCTATTCGCCTTAATTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345909" ref_strand="+" ref_description="SGN-U345909        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 1e-29, score=133)">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="83561" stop="84338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83861" g_stop="84037" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U345909" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83861" e_stop="84037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAATCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCT</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335937" ref_strand="+" ref_description="SGN-U335937        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84443" stop="85369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84743" g_stop="85073" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U335937" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84743" e_stop="85073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTATCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCCGAGAAAGCCAAGTCATAACCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATTTGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335930" ref_strand="+" ref_description="SGN-U335930        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-35, score=150)">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84650" stop="85808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84950" g_stop="85508" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U335930" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84950" e_stop="85508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATTTGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317064" ref_strand="+" ref_description="SGN-U317064        Tomato 200607 #1 [6 ESTs aligned] genbank/nr: gi|47824972|gb|AAT38745.1| putative polyprotein, 3'-partial [Solanum demissum] (evalue: 5e-64, score=248)">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccgggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagctgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgtcgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107M13-WbykN/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0107M13.1" temp_strand="+" temp_description="C04HBa0107M13.1  CU210888.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0107M13 sequenced_by:sanger upload_account_name:uk">
        <position start="84654" stop="86688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84954" g_stop="86388" g_length="1435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1437" r_length="1437" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107M13.1" gen_strand="+" ref_id="SGN-U317064" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>1435</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107M13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84954" e_stop="86388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATTTGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTTTTTGATGTTGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCTGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCATGAAACTTAGCCTCGTATGCATTGACCGACATCCTACCTTAATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCTCAAGTCATAGGTGGTTCCTCTGTTGGTTGACACTCAACATGTGACCTCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCATCAACTCAACACCAAACCGTTCTACTATACACATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTAT-GGGCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTCAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGAGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCA-TTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCGGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTCGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3558" PGL_stop="3140"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3558" e_stop="3140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="3558" e_stop="3140" e_length="419"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3558" stop="3140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344226" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAAATTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAATTAAGGAATAAAAGAAAAAACAAAATAAAAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGTACTTTGATAGAAAAATCATATATACCCCTAAATAATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGATATATGTGAGCCATTTTATAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGACATATATGAGCCACTTTTGTAACGAGGGGTATATCAGCTTCAAATGACAAAATTGAGGG</gDNA_template>
            <first_frame> L  L  *  M  T  K  I  F  L  R  I  R  N  *  I  T  I  H  T  K  K  *  F  N  F  L  F  F  K  L  R  N  K  R  K  N  K  I  K  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  Y  F  D  R  K  I  I  Y  T  P  K  *  F  L  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  D  I  C  E  P  F  Y  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  V  T  R  G  I  S  A  S  N  D  K  I  E   </first_frame>
            <second_frame>  Y  C  R  *  P  K  F  F  F  E  Y  E  I  K  L  Q  Y  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  I  K  E  K  T  K  *  K  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  C  T  L  I  E  K  S  Y  I  P  L  N  N  F  *  K  K  I  R  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  I  Y  V  S  H  F  I  T  A  G  V  Y  V  S  R  L  Y  N  G  K  D  I  Y  E  P  L  L  *  R  G  V  Y  Q  L  Q  M  T  K  L  R  </second_frame>
            <third_frame>   I  V  D  D  Q  N  F  S  S  N  T  K  L  N  Y  N  T  H  K  K  I  V  *  F  F  I  L  *  I  K  E  *  K  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  V  L  *  *  K  N  H  I  Y  P  *  I  I  F  K  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  T  Y  M  S  H  F  C  N  E  G  Y  I  S  F  K  *  Q  N  *  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="4869" PGL_stop="8202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="4895" e_stop="4931"/>
            <exon e_start="5528" e_stop="5835"/>
            <exon e_start="5967" e_stop="6133"/>
            <exon e_start="6932" e_stop="7028"/>
            <exon e_start="7110" e_stop="7501"/>
            <exon e_start="7583" e_stop="8202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.990"/>
          <exon-intron don_prob="0.787" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4895" e_stop="4931" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.712">
            <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="5528" e_stop="5835" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5967" e_stop="6133" e_length="167"/>
          </exon>
          <intron i_serial="3" don_prob="0.787" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6134" i_stop="6931" i_length="798"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6932" e_stop="7028" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7110" e_stop="7501" e_length="392"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7502" i_stop="7582" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="7583" e_stop="8202" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4895" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6133"/>
              <exon start="6932" stop="7028"/>
              <exon start="7110" stop="7131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7008" stop="7028"/>
              <exon start="7110" stop="7501"/>
              <exon start="7583" stop="8202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACGTTCAATCTTCATAGCACTCTATTTACATGAG : GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG : GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAG : GATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG : ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTG : GTATATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</gDNA_template>
            <first_frame> S  T  F  N  L  H  S  T  L  F  T  *   : G  W  S  W  W  S  F  N  *  I  M  A  L  A  P  H  S  N  I  L  C  N  H  E  A  I  K  C  Q  V  G  S  R  L  Q  S  H  T  R  F  S  W  G  R  A  D  Y  F  G  S  I  V  L  V  K  I  C  S  R  R  Q  I  P  T  Y  L  Q  K  S  S  R  I  C  C  G  L  D  S  R  S  L  Q  L  S  S  R  G  K  Q  N  L  S  S  A  H  R  I  N  Q  N  V  P  K  :  G  N  T  I  W  K  F  P  E  D  V  A  L  M  V  L  K  K  W  G  Q  L  A  K  T  A  I  V  T  I  F  I  L  S  V  A  S  K  A  D  A  V  D  A  L  K  T  C  T  C  L  L  K  E  C  R :   I  E  L  A  K  C  I  S  N  P  A  C  A  A  N  V  A  C  L  Q  T  C  N  N  R  P  D  E  T  E  C  Q  :  I  K  C  G  D  L  F  E  N  S  V  V  D  E  F  N  E  C  A  V  S  R  K  K  C  V  P  R  K  S  D  V  G  D  F  P  V  P  D  P  S  V  L  V  Q  K  F  D  M  N  D  F  I  G  K  W  Y  I  T  R  G  L  N  P  T  F  D  V  F  D  C  Q  L  H  E  F  H  T  E  G  N  K  L  V  G  S  L  T  W  R  I  G  T  P  D  G  G  F  F  T  R  S  A  V  Q  K  F  V  Q  D  P  K  Y  P  G  I  L  Y  N  H  D  N  E  Y  L  H  Y  Q  D  D  W :   Y  I  L  S  S  K  V  E  N  S  P  D  D  Y  I  F  V  Y  Y  K  G  R  N  D  A  W  D  G  Y  G  G  S  V  L  Y  T  R  S  S  V  L  P  E  T  I  I  P  E  L  Q  I  A  A  Q  K  V  G  R  D  F  N  T  F  I  K  T  D  N  T  C  G  P  E  P  P  L  V  E  R  L  E  K  K  V  E  E  G  E  R  T  I  I  K  E  V  E  E  I  E  E  E  V  E  K  V  K  E  K  E  V  S  L  F  S  R  L  F  E  G  F  K  E  L  Q  Q  D  E  E  N  F  I  R  E  L  S  K  E  E  M  D  I  L  D  G  L  K  M  E  A  T  E  V  E  K  L  F  G  N  A  L  P  I  R  K  L  R  *  I  L  L  *  E  L  Y  *  K  P  S  T  Y  R  M  Y  R  L  Y  L  I  Y  F  L  S  F  C  L  E  *  I  A  Y  I  S  C  N  A  P  </first_frame>
            <second_frame>  Q  R  S  I  F  I  A  L  Y  L  H  E  :  V  G  V  G  G  H  S  I  E  *  W  R  L  P  L  I  Q  T  F  C  A  I  M  R  P  S  N  V  K  L  D  Q  G  F  R  V  I  Q  D  L  A  G  V  E  Q  I  T  L  V  V  *  S  *  *  K  F  V  P  E  D  R  Y  L  H  T  C  R  N  L  L  E  Y  V  V  V  W  I  L  E  V  C  N  Y  H  H  G  G  N  K  I  F  L  L  H  I  E  L  T  R  M  Y  L  R :   E  I  Q  Y  G  N  F  Q  K  M  *  L  *  W  S  *  R  N  G  A  N  W  P  K  Q  Q  L  *  L  Y  L  F  C  Q  L  L  Q  R  L  M  P  L  M  L  S  K  L  V  L  A  Y  *  K  S  A   : G  *  S  L  R  S  A  S  Q  T  L  H  V  Q  L  M  L  P  V  S  K  H  A  T  I  D  L  M  K  R  N  V  R :   *  N  V  V  I  C  L  K  T  V  L  *  T  S  S  M  S  V  Q  S  P  G  R  N  V  Y  L  V  N  L  M  L  V  T  F  L  C  L  I  P  V  F  S  S  K  S  L  T  *  M  I  L  L  E  N  G  T  S  L  A  V  *  I  P  H  L  M  F  L  I  V  N  C  M  S  S  I  Q  K  E  T  N  L  W  E  V  *  L  G  E  *  G  H  L  M  E  D  F  S  L  D  P  Q  C  K  N  S  C  K  I  Q  S  I  P  G  Y  S  T  I  M  I  M  S  I  F  T  T  K  M  T   : G  I  F  C  H  P  K  L  K  T  V  Q  M  I  T  Y  L  C  T  I  R  A  E  M  M  H  G  M  D  M  V  V  L  Y  F  I  L  E  A  P  F  C  L  K  R  L  Y  L  S  C  K  L  Q  L  K  K  L  V  V  I  S  T  L  S  *  K  Q  T  I  L  V  A  L  S  H  P  L  L  N  G  *  R  R  K  W  K  K  E  S  G  Q  S  *  K  K  S  R  K  *  K  K  K  S  R  R  *  R  K  K  K  S  A  Y  S  V  D  C  S  K  V  S  K  S  C  N  K  M  K  K  T  L  *  E  S  S  A  K  K  K  W  I  F  W  M  D  L  K  W  K  Q  L  K  *  K  N  S  L  E  M  H  Y  Q  *  G  N  *  G  K  Y  C  Y  E  S  Y  I  R  N  H  P  H  T  E  C  I  D  C  I  *  F  T  F  Y  L  F  V  W  N  R  L  L  I  Y  H  V  M  L  Q </second_frame>
            <third_frame>   N  V  Q  S  S  *  H  S  I  Y  M  R :   L  E  L  V  V  I  Q  L  N  N  G  A  C  P  S  F  K  H  S  V  Q  S  *  G  H  Q  M  S  S  W  I  K  A  S  E  S  Y  K  I  *  L  G  *  S  R  L  L  W  *  Y  S  P  S  E  N  L  F  Q  K  T  D  T  Y  I  L  A  E  I  F  *  N  M  L  W  F  G  F  *  K  S  A  T  I  I  T  G  E  T  K  S  F  F  C  T  *  N  *  P  E  C  T  *   : G  K  Y  N  M  E  I  S  R  R  C  S  F  D  G  L  E  E  M  G  P  I  G  Q  N  S  N  C  N  Y  I  Y  F  V  S  C  F  K  G  *  C  R  *  C  S  Q  N  L  Y  L  L  T  E  R  V  Q  :  D  R  A  C  E  V  H  L  K  P  C  M  C  S  *  C  C  L  S  P  N  M  Q  Q  *  T  *  *  N  G  M  S   : D  K  M  W  *  F  V  *  K  Q  C  C  R  R  V  Q  *  V  C  S  L  P  E  E  M  C  T  S  *  I  *  C  W  *  L  S  C  A  *  S  Q  C  S  R  P  K  V  *  H  E  *  F  Y  W  K  M  V  H  H  S  R  F  E  S  H  I  *  C  F  *  L  S  I  A  *  V  P  Y  R  R  K  Q  T  C  G  K  S  D  L  E  N  R  D  T  *  W  R  I  F  H  S  I  R  S  A  K  I  R  A  R  S  K  V  S  R  D  T  L  Q  S  *  *  *  V  S  S  L  P  R  *  L  :  V  Y  F  V  I  Q  S  *  K  Q  S  R  *  L  H  I  C  V  L  *  G  Q  K  *  C  M  G  W  I  W  W  F  C  T  L  Y  *  K  L  R  F  A  *  N  D  Y  T  *  V  A  N  C  S  S  K  S  W  S  *  F  Q  H  F  H  K  N  R  Q  Y  L  W  P  *  A  T  P  C  *  T  V  R  E  E  S  G  R  R  R  A  D  N  H  K  R  S  R  G  N  R  R  R  S  R  E  G  E  G  K  R  S  Q  L  I  Q  *  T  V  R  R  F  Q  R  A  A  T  R  *  R  K  L  Y  K  R  A  Q  Q  R  R  N  G  Y  F  G  W  T  *  N  G  S  N  *  S  R  K  T  L  W  K  C  I  T  N  K  E  I  K  V  N  I  V  M  R  V  I  L  E  T  I  H  I  Q  N  V  *  I  V  F  N  L  L  F  I  F  L  S  G  I  D  C  L  Y  I  M  *  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5554" stop="5835"/>
                    <exon start="5967" stop="6133"/>
                    <exon start="6932" stop="7028"/>
                    <exon start="7110" stop="7501"/>
                    <exon start="7583" stop="8084"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1437</number_coding_nucleotides>
                  <number_encoded_amino_acids>479</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMALAPHSNILCNHEAIKCQVGSRLQSHTRFSWGRADYFGSIVLVKICSRRQIPTYLQKSSRICCGLDSRSLQLSSRGKQNLSSAHRINQNVPKGNTIWKFPEDVALMVLKKWGQLAKTAIVTIFILSVASKADAVDALKTCTCLLKECRIELAKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMNDFIGKWYITRGLNPTFDVFDCQLHEFHTEGNKLVGSLTWRIGTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSSVLPETIIPELQIAAQKVGRDFNTFIKTDNTCGPEPPLVERLEKKVEEGERTIIKEVEEIEEEVEKVKEKEVSLFSRLFEGFKELQQDEENFIRELSKEEMDILDGLKMEATEVEKLFGNALPIRKLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="4869" e_stop="4931"/>
            <exon e_start="5528" e_stop="5835"/>
            <exon e_start="5967" e_stop="6163"/>
            <exon e_start="6932" e_stop="7028"/>
            <exon e_start="7110" e_stop="7501"/>
            <exon e_start="7583" e_stop="8202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.976" acc_prob="0.712" e_score="0.952"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.935" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.981" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="4869" e_stop="4931" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.976" acc_prob="0.712">
            <gDNA_intron_boundary i_start="4932" i_stop="5527" i_length="596"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5528" e_stop="5835" e_length="308"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="5836" i_stop="5966" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="5967" e_stop="6163" e_length="197"/>
          </exon>
          <intron i_serial="3" don_prob="0.935" acc_prob="0.994">
            <gDNA_intron_boundary i_start="6164" i_stop="6931" i_length="768"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="6932" e_stop="7028" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.998">
            <gDNA_intron_boundary i_start="7029" i_stop="7109" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7110" e_stop="7501" e_length="392"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.999">
            <gDNA_intron_boundary i_start="7502" i_stop="7582" i_length="81"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="7583" e_stop="8202" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4869" stop="4931"/>
              <exon start="5528" stop="5835"/>
              <exon start="5967" stop="6163"/>
              <exon start="6932" stop="7028"/>
              <exon start="7110" stop="7168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324136" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7008" stop="7028"/>
              <exon start="7110" stop="7501"/>
              <exon start="7583" stop="8202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343404" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAAATCCACAACAACTCTTTATACTCAACGTTCAATCTTCATAGCACTCTATTTACATGAG : GTTGGAGTTGGTGGTCATTCAATTGAATAATGGCGCTTGCCCCTCATTCAAACATTCTGTGCAATCATGAGGCCATCAAATGTCAAGTTGGATCAAGGCTTCAGAGTCATACAAGATTTAGCTGGGGTAGAGCAGATTACTTTGGTAGTATAGTCCTAGTGAAAATTTGTTCCAGAAGACAGATACCTACATACTTGCAGAAATCTTCTAGAATATGTTGTGGTTTGGATTCTAGAAGTCTGCAACTATCATCACGGGGGAAACAAAATCTTTCTTCTGCACATAGAATTAACCAGAATGTACCTAAG : GGAAATACAATATGGAAATTTCCAGAAGATGTAGCTTTGATGGTCTTGAAGAAATGGGGCCAATTGGCCAAAACAGCAATTGTAACTATATTTATTTTGTCAGTTGCTTCAAAGGCTGATGCCGTTGATGCTCTCAAAACTTGTACTTGCTTACTGAAAGAGTGCAGGTAATTTGCAGATGTTACTAAAGTATGCCG : GATAGAGCTTGCGAAGTGCATCTCAAACCCTGCATGTGCAGCTAATGTTGCCTGTCTCCAAACATGCAACAATAGACCTGATGAAACGGAATGTCAG : ATAAAATGTGGTGATTTGTTTGAAAACAGTGTTGTAGACGAGTTCAATGAGTGTGCAGTCTCCCGGAAGAAATGTGTACCTCGTAAATCTGATGTTGGTGACTTTCCTGTGCCTGATCCCAGTGTTCTCGTCCAAAAGTTTGACATGAATGATTTTATTGGAAAATGGTACATCACTCGCGGTTTGAATCCCACATTTGATGTTTTTGATTGTCAATTGCATGAGTTCCATACAGAAGGAAACAAACTTGTGGGAAGTCTGACTTGGAGAATAGGGACACCTGATGGAGGATTTTTCACTCGATCCGCAGTGCAAAAATTCGTGCAAGATCCAAAGTATCCCGGGATACTCTACAATCATGATAATGAGTATCTTCACTACCAAGATGACTG : GTATATTTTGTCATCCAAAGTTGAAAACAGTCCAGATGATTACATATTTGTGTACTATAAGGGCAGAAATGATGCATGGGATGGATATGGTGGTTCTGTACTTTATACTAGAAGCTCCGTTTTGCCTGAAACGATTATACCTGAGTTGCAAATTGCAGCTCAAAAAGTTGGTCGTGATTTCAACACTTTCATAAAAACAGACAATACTTGTGGCCCTGAGCCACCCCTTGTTGAACGGTTAGAGAAGAAAGTGGAAGAAGGAGAGCGGACAATCATAAAAGAAGTCGAGGAAATAGAAGAAGAAGTCGAGAAGGTGAAGGAAAAAGAAGTCAGCTTATTCAGTAGACTGTTCGAAGGTTTCAAAGAGCTGCAACAAGATGAAGAAAACTTTATAAGAGAGCTCAGCAAAGAAGAAATGGATATTTTGGATGGACTTAAAATGGAAGCAACTGAAGTAGAAAAACTCTTTGGAAATGCATTACCAATAAGGAAATTAAGGTAAATATTGTTATGAGAGTTATATTAGAAACCATCCACATACAGAATGTATAGATTGTATTTAATTTACTTTTTATCTTTTTGTCTGGAATAGATTGCTTATATATCATGTAATGCTCCAA</gDNA_template>
            <first_frame> A  K  S  T  T  T  L  Y  T  Q  R  S  I  F  I  A  L  Y  L  H  E  :  V  G  V  G  G  H  S  I  E  *  W  R  L  P  L  I  Q  T  F  C  A  I  M  R  P  S  N  V  K  L  D  Q  G  F  R  V  I  Q  D  L  A  G  V  E  Q  I  T  L  V  V  *  S  *  *  K  F  V  P  E  D  R  Y  L  H  T  C  R  N  L  L  E  Y  V  V  V  W  I  L  E  V  C  N  Y  H  H  G  G  N  K  I  F  L  L  H  I  E  L  T  R  M  Y  L  R :   E  I  Q  Y  G  N  F  Q  K  M  *  L  *  W  S  *  R  N  G  A  N  W  P  K  Q  Q  L  *  L  Y  L  F  C  Q  L  L  Q  R  L  M  P  L  M  L  S  K  L  V  L  A  Y  *  K  S  A  G  N  L  Q  M  L  L  K  Y  A   : G  *  S  L  R  S  A  S  Q  T  L  H  V  Q  L  M  L  P  V  S  K  H  A  T  I  D  L  M  K  R  N  V  R :   *  N  V  V  I  C  L  K  T  V  L  *  T  S  S  M  S  V  Q  S  P  G  R  N  V  Y  L  V  N  L  M  L  V  T  F  L  C  L  I  P  V  F  S  S  K  S  L  T  *  M  I  L  L  E  N  G  T  S  L  A  V  *  I  P  H  L  M  F  L  I  V  N  C  M  S  S  I  Q  K  E  T  N  L  W  E  V  *  L  G  E  *  G  H  L  M  E  D  F  S  L  D  P  Q  C  K  N  S  C  K  I  Q  S  I  P  G  Y  S  T  I  M  I  M  S  I  F  T  T  K  M  T   : G  I  F  C  H  P  K  L  K  T  V  Q  M  I  T  Y  L  C  T  I  R  A  E  M  M  H  G  M  D  M  V  V  L  Y  F  I  L  E  A  P  F  C  L  K  R  L  Y  L  S  C  K  L  Q  L  K  K  L  V  V  I  S  T  L  S  *  K  Q  T  I  L  V  A  L  S  H  P  L  L  N  G  *  R  R  K  W  K  K  E  S  G  Q  S  *  K  K  S  R  K  *  K  K  K  S  R  R  *  R  K  K  K  S  A  Y  S  V  D  C  S  K  V  S  K  S  C  N  K  M  K  K  T  L  *  E  S  S  A  K  K  K  W  I  F  W  M  D  L  K  W  K  Q  L  K  *  K  N  S  L  E  M  H  Y  Q  *  G  N  *  G  K  Y  C  Y  E  S  Y  I  R  N  H  P  H  T  E  C  I  D  C  I  *  F  T  F  Y  L  F  V  W  N  R  L  L  I  Y  H  V  M  L  Q </first_frame>
            <second_frame>  Q  N  P  Q  Q  L  F  I  L  N  V  Q  S  S  *  H  S  I  Y  M  R :   L  E  L  V  V  I  Q  L  N  N  G  A  C  P  S  F  K  H  S  V  Q  S  *  G  H  Q  M  S  S  W  I  K  A  S  E  S  Y  K  I  *  L  G  *  S  R  L  L  W  *  Y  S  P  S  E  N  L  F  Q  K  T  D  T  Y  I  L  A  E  I  F  *  N  M  L  W  F  G  F  *  K  S  A  T  I  I  T  G  E  T  K  S  F  F  C  T  *  N  *  P  E  C  T  *   : G  K  Y  N  M  E  I  S  R  R  C  S  F  D  G  L  E  E  M  G  P  I  G  Q  N  S  N  C  N  Y  I  Y  F  V  S  C  F  K  G  *  C  R  *  C  S  Q  N  L  Y  L  L  T  E  R  V  Q  V  I  C  R  C  Y  *  S  M  P  :  D  R  A  C  E  V  H  L  K  P  C  M  C  S  *  C  C  L  S  P  N  M  Q  Q  *  T  *  *  N  G  M  S   : D  K  M  W  *  F  V  *  K  Q  C  C  R  R  V  Q  *  V  C  S  L  P  E  E  M  C  T  S  *  I  *  C  W  *  L  S  C  A  *  S  Q  C  S  R  P  K  V  *  H  E  *  F  Y  W  K  M  V  H  H  S  R  F  E  S  H  I  *  C  F  *  L  S  I  A  *  V  P  Y  R  R  K  Q  T  C  G  K  S  D  L  E  N  R  D  T  *  W  R  I  F  H  S  I  R  S  A  K  I  R  A  R  S  K  V  S  R  D  T  L  Q  S  *  *  *  V  S  S  L  P  R  *  L  :  V  Y  F  V  I  Q  S  *  K  Q  S  R  *  L  H  I  C  V  L  *  G  Q  K  *  C  M  G  W  I  W  W  F  C  T  L  Y  *  K  L  R  F  A  *  N  D  Y  T  *  V  A  N  C  S  S  K  S  W  S  *  F  Q  H  F  H  K  N  R  Q  Y  L  W  P  *  A  T  P  C  *  T  V  R  E  E  S  G  R  R  R  A  D  N  H  K  R  S  R  G  N  R  R  R  S  R  E  G  E  G  K  R  S  Q  L  I  Q  *  T  V  R  R  F  Q  R  A  A  T  R  *  R  K  L  Y  K  R  A  Q  Q  R  R  N  G  Y  F  G  W  T  *  N  G  S  N  *  S  R  K  T  L  W  K  C  I  T  N  K  E  I  K  V  N  I  V  M  R  V  I  L  E  T  I  H  I  Q  N  V  *  I  V  F  N  L  L  F  I  F  L  S  G  I  D  C  L  Y  I  M  *  C  S   </second_frame>
            <third_frame>   K  I  H  N  N  S  L  Y  S  T  F  N  L  H  S  T  L  F  T  *   : G  W  S  W  W  S  F  N  *  I  M  A  L  A  P  H  S  N  I  L  C  N  H  E  A  I  K  C  Q  V  G  S  R  L  Q  S  H  T  R  F  S  W  G  R  A  D  Y  F  G  S  I  V  L  V  K  I  C  S  R  R  Q  I  P  T  Y  L  Q  K  S  S  R  I  C  C  G  L  D  S  R  S  L  Q  L  S  S  R  G  K  Q  N  L  S  S  A  H  R  I  N  Q  N  V  P  K  :  G  N  T  I  W  K  F  P  E  D  V  A  L  M  V  L  K  K  W  G  Q  L  A  K  T  A  I  V  T  I  F  I  L  S  V  A  S  K  A  D  A  V  D  A  L  K  T  C  T  C  L  L  K  E  C  R  *  F  A  D  V  T  K  V  C  R :   I  E  L  A  K  C  I  S  N  P  A  C  A  A  N  V  A  C  L  Q  T  C  N  N  R  P  D  E  T  E  C  Q  :  I  K  C  G  D  L  F  E  N  S  V  V  D  E  F  N  E  C  A  V  S  R  K  K  C  V  P  R  K  S  D  V  G  D  F  P  V  P  D  P  S  V  L  V  Q  K  F  D  M  N  D  F  I  G  K  W  Y  I  T  R  G  L  N  P  T  F  D  V  F  D  C  Q  L  H  E  F  H  T  E  G  N  K  L  V  G  S  L  T  W  R  I  G  T  P  D  G  G  F  F  T  R  S  A  V  Q  K  F  V  Q  D  P  K  Y  P  G  I  L  Y  N  H  D  N  E  Y  L  H  Y  Q  D  D  W :   Y  I  L  S  S  K  V  E  N  S  P  D  D  Y  I  F  V  Y  Y  K  G  R  N  D  A  W  D  G  Y  G  G  S  V  L  Y  T  R  S  S  V  L  P  E  T  I  I  P  E  L  Q  I  A  A  Q  K  V  G  R  D  F  N  T  F  I  K  T  D  N  T  C  G  P  E  P  P  L  V  E  R  L  E  K  K  V  E  E  G  E  R  T  I  I  K  E  V  E  E  I  E  E  E  V  E  K  V  K  E  K  E  V  S  L  F  S  R  L  F  E  G  F  K  E  L  Q  Q  D  E  E  N  F  I  R  E  L  S  K  E  E  M  D  I  L  D  G  L  K  M  E  A  T  E  V  E  K  L  F  G  N  A  L  P  I  R  K  L  R  *  I  L  L  *  E  L  Y  *  K  P  S  T  Y  R  M  Y  R  L  Y  L  I  Y  F  L  S  F  C  L  E  *  I  A  Y  I  S  C  N  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6138" stop="6163"/>
                    <exon start="6932" stop="7028"/>
                    <exon start="7110" stop="7501"/>
                    <exon start="7583" stop="8084"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FADVTKVCRIELAKCISNPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGDFPVPDPSVLVQKFDMNDFIGKWYITRGLNPTFDVFDCQLHEFHTEGNKLVGSLTWRIGTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSSVLPETIIPELQIAAQKVGRDFNTFIKTDNTCGPEPPLVERLEKKVEEGERTIIKEVEEIEEEVEKVKEKEVSLFSRLFEGFKELQQDEENFIRELSKEEMDILDGLKMEATEVEKLFGNALPIRKLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5554" stop="5835"/>
                    <exon start="5967" stop="6137"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IMALAPHSNILCNHEAIKCQVGSRLQSHTRFSWGRADYFGSIVLVKICSRRQIPTYLQKSSRICCGLDSRSLQLSSRGKQNLSSAHRINQNVPKGNTIWKFPEDVALMVLKKWGQLAKTAIVTIFILSVASKADAVDALKTCTCLLKECR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="11578" PGL_stop="8345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11578" e_stop="11165"/>
            <exon e_start="11055" e_stop="10887"/>
            <exon e_start="10630" e_stop="10450"/>
            <exon e_start="10371" e_stop="10288"/>
            <exon e_start="10093" e_stop="9986"/>
            <exon e_start="9172" e_stop="8903"/>
            <exon e_start="8704" e_stop="8345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.908" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.914" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="11578" e_stop="11165" e_length="414"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.908">
            <gDNA_intron_boundary i_start="11164" i_stop="11056" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11055" e_stop="10887" e_length="169"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.958">
            <gDNA_intron_boundary i_start="10886" i_stop="10631" i_length="256"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10630" e_stop="10450" e_length="181"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.989">
            <gDNA_intron_boundary i_start="10449" i_stop="10372" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10371" e_stop="10288" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.958" acc_prob="0.995">
            <gDNA_intron_boundary i_start="10287" i_stop="10094" i_length="194"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10093" e_stop="9986" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.914" acc_prob="0.900">
            <gDNA_intron_boundary i_start="9985" i_stop="9173" i_length="813"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9172" e_stop="8903" e_length="270"/>
          </exon>
          <intron i_serial="6" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="8902" i_stop="8705" i_length="198"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="8704" e_stop="8345" e_length="360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11578" stop="11165"/>
              <exon start="11055" stop="10887"/>
              <exon start="10630" stop="10450"/>
              <exon start="10371" stop="10288"/>
              <exon start="10093" stop="9986"/>
              <exon start="9172" stop="8903"/>
              <exon start="8704" stop="8345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAAACTACCTTTGTTGCTGTCTAATAACATTATTAGTAACTTTATTATAAGCCAATCCAAACACTCTTTGAAGAGTAAAGTGTAGTCTACAACTGAACAGTCTCTCTGAGTGTAGTCTACAACTGAACAGTGTCTCCGAGCCATGTCTTACATTCCACCACACAAGAGGCACACAAAGGGTTCACCGTCGCCGGAACCAACTCCGGCACCGGAATCAGTGCTACCTGCCTTGAGAAAAAGCCTGAATTTCAAGAGAAAGGAAAACATTCGGCTCGAGATCCGTTATGCTCATGGTGCAGTTAGGAAATGGTTCCCTGTTGGTTTGACTCATTTTTCATCTCTTGTCAACCTTCAACCTCTTTCTATCCATCAAAAATCTAACGAAAATCCTCTTCGTTTGGTGCTAATGCAAG : GTTGCAATGGAGGAACGAATGATGAGCCATGGCGTTTGGTGGCTAAAAATGTGATGGAAGACTTACTTTTGTCATTTCAACATGTCAAATCTGTAATGGAGGAATCTAATATGGAAGAAGAATCAAAGCCGAGTCTAGTTGCTCGTTTTGGAAGAATTCTCTTTCATGG : GATTTCTGCAAAAAGTCAAGAATCCCTCAATAGTAACCTATTAAAGGAAACTACCTTGAGGCAAATGAGAAAATCTTTCTATACCAGTGTTCCTCTTTCATACATGGAATATATACGAAACCTTGCAGTTGAAAAACTTGACTTACAATATGTGGAGGAGAAGGAATTATACTACGTCAAG : CTTTCAGACAACATGCGCGCTGATTCAACTGTCACCTGCAAATGTACGGTGGTCAAGGATCAGGAGAAAATTCAGCTCCATAAG : ATTGAGCTGAACCAAGTACGCAACATGGTTGCAGACATGAGCTGTCCTGGCAAAAGCTTAGACCTGAGGTTGATGTTAAACACCAAGAAAATCATGACGGGTTTATCT : GATGAGGAGATCAATGAAATTAAAAGTCTTATCGGTTCAGCTGTGTTGGACTCTGAAGTTAAGGGTGGGCTGAGATGGCCCTTTGGCGAGGATTCTTCAGGGAGTCGATATGCTGTTACCGGTGTCTGGCACACAACTGCAAAATCGTATGGGAATTCGTCAATTAGGCTTAAGCTTAGACATGCAGATCGATATGATTTCAGATCTTCAACTGGTGAGGTTGCACAGGAAGTTAACCTGAAAATGTCTGGGATTTTATCCCAATTGCAG : GAGGAAACGATTGACGAAAACCTGGTGCTTAAAATGCTGGAAGACAACTTGAAGTTAATCTGGGATCACTGTTTGGATGATGGTTCTTCAAGCTGATGACCATATTTCGCGGTCCTTCACTCTCTTTGCAAAATATCTGCAGAAACTCACAAGCTATGGTCGTTTGGTGAAGAAAGTTACCTTTTGTAGTTTGCAGTGGTGGAATGTATAGATGGATAACTGAATTGTTAAACTCAAAATGTTGAATGCTGTTTGCAGTATATTGTTTTGCGTATGGAATGAAATGAACCAAGGCCTCTGATGGTAGCGGCATCAGTAAAGGAATAGTTTTGTTTTTGTAATGGATCGAACTTCTTAGTT</gDNA_template>
            <first_frame> S  N  Y  L  C  C  C  L  I  T  L  L  V  T  L  L  *  A  N  P  N  T  L  *  R  V  K  C  S  L  Q  L  N  S  L  S  E  C  S  L  Q  L  N  S  V  S  E  P  C  L  T  F  H  H  T  R  G  T  Q  R  V  H  R  R  R  N  Q  L  R  H  R  N  Q  C  Y  L  P  *  E  K  A  *  I  S  R  E  R  K  T  F  G  S  R  S  V  M  L  M  V  Q  L  G  N  G  S  L  L  V  *  L  I  F  H  L  L  S  T  F  N  L  F  L  S  I  K  N  L  T  K  I  L  F  V  W  C  *  C  K  :  V  A  M  E  E  R  M  M  S  H  G  V  W  W  L  K  M  *  W  K  T  Y  F  C  H  F  N  M  S  N  L  *  W  R  N  L  I  W  K  K  N  Q  S  R  V  *  L  L  V  L  E  E  F  S  F  M   : G  F  L  Q  K  V  K  N  P  S  I  V  T  Y  *  R  K  L  P  *  G  K  *  E  N  L  S  I  P  V  F  L  F  H  T  W  N  I  Y  E  T  L  Q  L  K  N  L  T  Y  N  M  W  R  R  R  N  Y  T  T  S  S :   F  Q  T  T  C  A  L  I  Q  L  S  P  A  N  V  R  W  S  R  I  R  R  K  F  S  S  I  R :   L  S  *  T  K  Y  A  T  W  L  Q  T  *  A  V  L  A  K  A  *  T  *  G  *  C  *  T  P  R  K  S  *  R  V  Y  L :   M  R  R  S  M  K  L  K  V  L  S  V  Q  L  C  W  T  L  K  L  R  V  G  *  D  G  P  L  A  R  I  L  Q  G  V  D  M  L  L  P  V  S  G  T  Q  L  Q  N  R  M  G  I  R  Q  L  G  L  S  L  D  M  Q  I  D  M  I  S  D  L  Q  L  V  R  L  H  R  K  L  T  *  K  C  L  G  F  Y  P  N  C  R :   R  K  R  L  T  K  T  W  C  L  K  C  W  K  T  T  *  S  *  S  G  I  T  V  W  M  M  V  L  Q  A  D  D  H  I  S  R  S  F  T  L  F  A  K  Y  L  Q  K  L  T  S  Y  G  R  L  V  K  K  V  T  F  C  S  L  Q  W  W  N  V  *  M  D  N  *  I  V  K  L  K  M  L  N  A  V  C  S  I  L  F  C  V  W  N  E  M  N  Q  G  L  *  W  *  R  H  Q  *  R  N  S  F  V  F  V  M  D  R  T  S  *   </first_frame>
            <second_frame>  Q  T  T  F  V  A  V  *  *  H  Y  *  *  L  Y  Y  K  P  I  Q  T  L  F  E  E  *  S  V  V  Y  N  *  T  V  S  L  S  V  V  Y  N  *  T  V  S  P  S  H  V  L  H  S  T  T  Q  E  A  H  K  G  F  T  V  A  G  T  N  S  G  T  G  I  S  A  T  C  L  E  K  K  P  E  F  Q  E  K  G  K  H  S  A  R  D  P  L  C  S  W  C  S  *  E  M  V  P  C  W  F  D  S  F  F  I  S  C  Q  P  S  T  S  F  Y  P  S  K  I  *  R  K  S  S  S  F  G  A  N  A  R :   L  Q  W  R  N  E  *  *  A  M  A  F  G  G  *  K  C  D  G  R  L  T  F  V  I  S  T  C  Q  I  C  N  G  G  I  *  Y  G  R  R  I  K  A  E  S  S  C  S  F  W  K  N  S  L  S  W  :  D  F  C  K  K  S  R  I  P  Q  *  *  P  I  K  G  N  Y  L  E  A  N  E  K  I  F  L  Y  Q  C  S  S  F  I  H  G  I  Y  T  K  P  C  S  *  K  T  *  L  T  I  C  G  G  E  G  I  I  L  R  Q   : A  F  R  Q  H  A  R  *  F  N  C  H  L  Q  M  Y  G  G  Q  G  S  G  E  N  S  A  P  *   : D  *  A  E  P  S  T  Q  H  G  C  R  H  E  L  S  W  Q  K  L  R  P  E  V  D  V  K  H  Q  E  N  H  D  G  F  I   : *  *  G  D  Q  *  N  *  K  S  Y  R  F  S  C  V  G  L  *  S  *  G  W  A  E  M  A  L  W  R  G  F  F  R  E  S  I  C  C  Y  R  C  L  A  H  N  C  K  I  V  W  E  F  V  N  *  A  *  A  *  T  C  R  S  I  *  F  Q  I  F  N  W  *  G  C  T  G  S  *  P  E  N  V  W  D  F  I  P  I  A   : G  G  N  D  *  R  K  P  G  A  *  N  A  G  R  Q  L  E  V  N  L  G  S  L  F  G  *  W  F  F  K  L  M  T  I  F  R  G  P  S  L  S  L  Q  N  I  C  R  N  S  Q  A  M  V  V  W  *  R  K  L  P  F  V  V  C  S  G  G  M  Y  R  W  I  T  E  L  L  N  S  K  C  *  M  L  F  A  V  Y  C  F  A  Y  G  M  K  *  T  K  A  S  D  G  S  G  I  S  K  G  I  V  L  F  L  *  W  I  E  L  L  S  </second_frame>
            <third_frame>   K  L  P  L  L  L  S  N  N  I  I  S  N  F  I  I  S  Q  S  K  H  S  L  K  S  K  V  *  S  T  T  E  Q  S  L  *  V  *  S  T  T  E  Q  C  L  R  A  M  S  Y  I  P  P  H  K  R  H  T  K  G  S  P  S  P  E  P  T  P  A  P  E  S  V  L  P  A  L  R  K  S  L  N  F  K  R  K  E  N  I  R  L  E  I  R  Y  A  H  G  A  V  R  K  W  F  P  V  G  L  T  H  F  S  S  L  V  N  L  Q  P  L  S  I  H  Q  K  S  N  E  N  P  L  R  L  V  L  M  Q   : G  C  N  G  G  T  N  D  E  P  W  R  L  V  A  K  N  V  M  E  D  L  L  L  S  F  Q  H  V  K  S  V  M  E  E  S  N  M  E  E  E  S  K  P  S  L  V  A  R  F  G  R  I  L  F  H  G :   I  S  A  K  S  Q  E  S  L  N  S  N  L  L  K  E  T  T  L  R  Q  M  R  K  S  F  Y  T  S  V  P  L  S  Y  M  E  Y  I  R  N  L  A  V  E  K  L  D  L  Q  Y  V  E  E  K  E  L  Y  Y  V  K  :  L  S  D  N  M  R  A  D  S  T  V  T  C  K  C  T  V  V  K  D  Q  E  K  I  Q  L  H  K  :  I  E  L  N  Q  V  R  N  M  V  A  D  M  S  C  P  G  K  S  L  D  L  R  L  M  L  N  T  K  K  I  M  T  G  L  S  :  D  E  E  I  N  E  I  K  S  L  I  G  S  A  V  L  D  S  E  V  K  G  G  L  R  W  P  F  G  E  D  S  S  G  S  R  Y  A  V  T  G  V  W  H  T  T  A  K  S  Y  G  N  S  S  I  R  L  K  L  R  H  A  D  R  Y  D  F  R  S  S  T  G  E  V  A  Q  E  V  N  L  K  M  S  G  I  L  S  Q  L  Q  :  E  E  T  I  D  E  N  L  V  L  K  M  L  E  D  N  L  K  L  I  W  D  H  C  L  D  D  G  S  S  S  *  *  P  Y  F  A  V  L  H  S  L  C  K  I  S  A  E  T  H  K  L  W  S  F  G  E  E  S  Y  L  L  *  F  A  V  V  E  C  I  D  G  *  L  N  C  *  T  Q  N  V  E  C  C  L  Q  Y  I  V  L  R  M  E  *  N  E  P  R  P  L  M  V  A  A  S  V  K  E  *  F  C  F  C  N  G  S  N  F  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11462" stop="11165"/>
                    <exon start="11055" stop="10887"/>
                    <exon start="10630" stop="10450"/>
                    <exon start="10371" stop="10288"/>
                    <exon start="10093" stop="9986"/>
                    <exon start="9172" stop="8903"/>
                    <exon start="8704" stop="8609"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STTEQCLRAMSYIPPHKRHTKGSPSPEPTPAPESVLPALRKSLNFKRKENIRLEIRYAHGAVRKWFPVGLTHFSSLVNLQPLSIHQKSNENPLRLVLMQGCNGGTNDEPWRLVAKNVMEDLLLSFQHVKSVMEESNMEEESKPSLVARFGRILFHGISAKSQESLNSNLLKETTLRQMRKSFYTSVPLSYMEYIRNLAVEKLDLQYVEEKELYYVKLSDNMRADSTVTCKCTVVKDQEKIQLHKIELNQVRNMVADMSCPGKSLDLRLMLNTKKIMTGLSDEEINEIKSLIGSAVLDSEVKGGLRWPFGEDSSGSRYAVTGVWHTTAKSYGNSSIRLKLRHADRYDFRSSTGEVAQEVNLKMSGILSQLQEETIDENLVLKMLEDNLKLIWDHCLDDGSSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17892" PGL_stop="17650"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17892" e_stop="17650"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="17892" e_stop="17650" e_length="243"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17892" stop="17650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324767" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAATTACAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATTTGTGCGGAAAACTAGAGAGTGTGAGCGATATTGTAGTGAGGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGAAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGATTTCCACGTA</gDNA_template>
            <first_frame> R  I  T  K  E  R  K  E  E  *  G  I  T  E  E  N  N  L  C  G  K  L  E  S  V  S  D  I  V  V  R  W  K  N  Q  K  S  V  I  S  F  E  C  E  V  V  F  G  V  L  L  R  H  T  S  V  K  S  L  L  *  *  Y  S  L  L  L  S  G  R  G  F  S  L  I  *  E  D  F  H  V </first_frame>
            <second_frame>  E  L  Q  R  R  E  K  K  S  E  A  S  Q  R  K  I  I  C  A  E  N  *  R  V  *  A  I  L  *  *  G  G  K  I  K  R  V  L  F  L  L  N  V  K  W  S  L  E  F  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  R  C  S  S  R  V  V  V  F  P  L  F  R  R  I  S  T   </second_frame>
            <third_frame>   N  Y  K  G  E  K  R  R  V  R  H  H  R  G  K  *  F  V  R  K  T  R  E  C  E  R  Y  C  S  E  V  E  K  S  K  E  C  Y  F  F  *  M  *  S  G  L  W  S  F  T  Q  T  Y  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  W  F  F  P  Y  L  G  G  F  P  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="23561" PGL_stop="22754"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23561" e_stop="22754"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="23561" e_stop="22754" e_length="808"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23561" stop="22754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345812" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAAAAGTCCTTGTATGGACTTAAGCAGTCTCCAAGGCAGTGGTACAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAATGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCTGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTCTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  F  Q  G  R  K  I  T  S  A  S  *  K  S  P  C  M  D  L  S  S  L  Q  G  S  G  T  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  G  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  M  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  T  L  E  V  H  L  T  L  V  S  F  M  E  V  I  L  S  A  W  L  L  A  I  L  I  L  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </first_frame>
            <second_frame>  F  P  S  S  R  E  G  K  S  R  L  Q  V  E  K  V  L  V  W  T  *  A  V  S  K  A  V  V  Q  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  P  *  R  Y  I  *  R  W  S  H  L  W  R  *  Y  S  V  L  G  Y  W  L  F  *  F  *  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  W  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  R  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  N  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  L  I  Y  G  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  S  T  L  G  G  S  V  V  S  W  K  A  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23559" stop="22756"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPNAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCLVTGYSDSDYAGDVDTRRSMTGYVSTLGGSVVSWKAT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="24220" PGL_stop="23572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24220" e_stop="23572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="24220" e_stop="23572" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24220" stop="23572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACAGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCATCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTAAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGAATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAATCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATTTGGAGCTTGAACAACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAAAAATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  A  T  D  R  N  *  Y  S  R  I  Y  A  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  I  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  N  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  S  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  P  S  V  T  S  D  S  C  T  S  E  F  G  A  *  T  T  *  C  E  D  S  V  S  T  W  R  V  G  G  K  N  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  E  P  Q  T  E  T  D  I  P  E  S  M  P  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  S  K  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  R  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  A  F  L  H  G  E  L  E  E  K  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  S  H  R  Q  K  L  I  F  Q  N  L  C  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  H  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  E  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  I  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  K  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24219" stop="23572"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSKKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEKIYMT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="39608" PGL_stop="40085"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39608" e_stop="40085"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="39608" e_stop="40085" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39608" stop="40085"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAGGCCTGGTAGTGAATTTCAGGGATTACCCATTCCGGAGTGGAAGTGGGACCACATTACTATGGATTTTGTGGCTGGTCTACCGAGGACTTTTAGAGGAGTTGATAGTATTTGGGTCATCGTTGATCGATTGACCAAGTCAGCACATTTCCTTCCCGTTCAATCTTCATTTAGTGCTGAGAGGTTGGCTCGTATCTACATTCGGGAGGTGGTTCGACTTCATGGGGTGCCAGTTTCTATTATATCAGATCGGGGTTCTCAGTTCATGTCTAGCTTTTGGAGGACCTTTCAGGATGAGTTGGGCACCCGGGTTGACCTGAGCATAGCTTTCCACCCGCAGACTGATGGCCAGTCAGAGTGCACTATTCAGGTCCTCGAAGACATGCTACGGGCTTGTGTTTTGGAGTTTGGTGGTCAATGGGACCAGTTCTTGCCTTTGGAGGAATTGCATATAACAACAACTACCATTCTAGCA</gDNA_template>
            <first_frame> F  E  A  W  *  *  I  S  G  I  T  H  S  G  V  E  V  G  P  H  Y  Y  G  F  C  G  W  S  T  E  D  F  *  R  S  *  *  Y  L  G  H  R  *  S  I  D  Q  V  S  T  F  P  S  R  S  I  F  I  *  C  *  E  V  G  S  Y  L  H  S  G  G  G  S  T  S  W  G  A  S  F  Y  Y  I  R  S  G  F  S  V  H  V  *  L  L  E  D  L  S  G  *  V  G  H  P  G  *  P  E  H  S  F  P  P  A  D  *  W  P  V  R  V  H  Y  S  G  P  R  R  H  A  T  G  L  C  F  G  V  W  W  S  M  G  P  V  L  A  F  G  G  I  A  Y  N  N  N  Y  H  S  S  </first_frame>
            <second_frame>  S  R  P  G  S  E  F  Q  G  L  P  I  P  E  W  K  W  D  H  I  T  M  D  F  V  A  G  L  P  R  T  F  R  G  V  D  S  I  W  V  I  V  D  R  L  T  K  S  A  H  F  L  P  V  Q  S  S  F  S  A  E  R  L  A  R  I  Y  I  R  E  V  V  R  L  H  G  V  P  V  S  I  I  S  D  R  G  S  Q  F  M  S  S  F  W  R  T  F  Q  D  E  L  G  T  R  V  D  L  S  I  A  F  H  P  Q  T  D  G  Q  S  E  C  T  I  Q  V  L  E  D  M  L  R  A  C  V  L  E  F  G  G  Q  W  D  Q  F  L  P  L  E  E  L  H  I  T  T  T  T  I  L  A </second_frame>
            <third_frame>   R  G  L  V  V  N  F  R  D  Y  P  F  R  S  G  S  G  T  T  L  L  W  I  L  W  L  V  Y  R  G  L  L  E  E  L  I  V  F  G  S  S  L  I  D  *  P  S  Q  H  I  S  F  P  F  N  L  H  L  V  L  R  G  W  L  V  S  T  F  G  R  W  F  D  F  M  G  C  Q  F  L  L  Y  Q  I  G  V  L  S  S  C  L  A  F  G  G  P  F  R  M  S  W  A  P  G  L  T  *  A  *  L  S  T  R  R  L  M  A  S  Q  S  A  L  F  R  S  S  K  T  C  Y  G  L  V  F  W  S  L  V  V  N  G  T  S  S  C  L  W  R  N  C  I  *  Q  Q  L  P  F  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39609" stop="40085"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRPGSEFQGLPIPEWKWDHITMDFVAGLPRTFRGVDSIWVIVDRLTKSAHFLPVQSSFSAERLARIYIREVVRLHGVPVSIISDRGSQFMSSFWRTFQDELGTRVDLSIAFHPQTDGQSECTIQVLEDMLRACVLEFGGQWDQFLPLEELHITTTTILA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="61872" PGL_stop="58962"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61872" e_stop="61761"/>
            <exon e_start="61646" e_stop="61622"/>
            <exon e_start="59535" e_stop="58962"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="0.920"/>
          <exon-intron don_prob="0.000" acc_prob="0.857" e_score="0.680"/>
          <exon-only e_score="0.911"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="61872" e_stop="61761" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61760" i_stop="61647" i_length="114"/>
          </intron>
          <exon e_serial="2" e_score="0.680">
            <gDNA_exon_boundary e_start="61646" e_stop="61622" e_length="25"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.857">
            <gDNA_intron_boundary i_start="61621" i_stop="59536" i_length="2086"/>
          </intron>
          <exon e_serial="3" e_score="0.911">
            <gDNA_exon_boundary e_start="59535" e_stop="58962" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61872" stop="61761"/>
              <exon start="61646" stop="61622"/>
              <exon start="59535" stop="58962"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343276" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATAATATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGGAAATTAGATTTGGAGCTTCAAAATTCAATTTTCAACTTTCCACCTTTGGCTTTCGGCGGTCATAAAC : GTTTTATTTTTTAATATGAATTTCG : AACCTACTGAAGATATTCTAGCATGATGGAGAAATCGCGGCAAAGGATTTCCAAAACTAGTACCGATGGATCGAGATATATTAGTAATGCAAGCATCATCATTAGCTTCTGAAGGCGTCTTTAGTGCAGCAAGGTTTCGACTTGGAGAACATAGGCATTCACTAGCAGCAGACAGCTTGGAGATATCGATATTATTTTGAGATTGGATTAACGCCGAGAGAAGAAATTTGGGTCGTGAACCACTACCTACCAAATTTCAAGATGACGTTGATAAAGTAATGCAGGATTATGGTGACGGCGGGATTGAAGCAATGGAAGATCTTTCTATTCAACCAATTCCCGAACATGTTACTACAGAAATGTTGAATGATTTACGAAGGGATTTACATGGTGGCACCAACTATTAGTAAAAGTATGATAATTCAAGATTTAATTCAAACAGAACCCTTCCTAGAACGTGGTTGTGTAGATTAAATCTTTTAATACTCTACTAATATTTTTGTAATTGTAATTGTAATTGTAATATAAAATAAATATTAATAAAAATATAGGTTATTCACCTTAATTTGTTTTT</gDNA_template>
            <first_frame> I  Y  N  I  L  N  S  G  V  A  L  F  G  L  W  K  L  D  L  E  L  Q  N  S  I  F  N  F  P  P  L  A  F  G  G  H  K   : R  F  I  F  *  Y  E  F  R :   T  Y  *  R  Y  S  S  M  M  E  K  S  R  Q  R  I  S  K  T  S  T  D  G  S  R  Y  I  S  N  A  S  I  I  I  S  F  *  R  R  L  *  C  S  K  V  S  T  W  R  T  *  A  F  T  S  S  R  Q  L  G  D  I  D  I  I  L  R  L  D  *  R  R  E  K  K  F  G  S  *  T  T  T  Y  Q  I  S  R  *  R  *  *  S  N  A  G  L  W  *  R  R  D  *  S  N  G  R  S  F  Y  S  T  N  S  R  T  C  Y  Y  R  N  V  E  *  F  T  K  G  F  T  W  W  H  Q  L  L  V  K  V  *  *  F  K  I  *  F  K  Q  N  P  S  *  N  V  V  V  *  I  K  S  F  N  T  L  L  I  F  L  *  L  *  L  *  L  *  Y  K  I  N  I  N  K  N  I  G  Y  S  P  *  F  V  F </first_frame>
            <second_frame>  Y  I  I  S  *  I  P  V  L  P  Y  L  V  F  G  N  *  I  W  S  F  K  I  Q  F  S  T  F  H  L  W  L  S  A  V  I  N  :  V  L  F  F  N  M  N  F   : E  P  T  E  D  I  L  A  *  W  R  N  R  G  K  G  F  P  K  L  V  P  M  D  R  D  I  L  V  M  Q  A  S  S  L  A  S  E  G  V  F  S  A  A  R  F  R  L  G  E  H  R  H  S  L  A  A  D  S  L  E  I  S  I  L  F  *  D  W  I  N  A  E  R  R  N  L  G  R  E  P  L  P  T  K  F  Q  D  D  V  D  K  V  M  Q  D  Y  G  D  G  G  I  E  A  M  E  D  L  S  I  Q  P  I  P  E  H  V  T  T  E  M  L  N  D  L  R  R  D  L  H  G  G  T  N  Y  *  *  K  Y  D  N  S  R  F  N  S  N  R  T  L  P  R  T  W  L  C  R  L  N  L  L  I  L  Y  *  Y  F  C  N  C  N  C  N  C  N  I  K  *  I  L  I  K  I  *  V  I  H  L  N  L  F   </second_frame>
            <third_frame>   I  *  Y  L  K  F  R  C  C  L  I  W  S  L  E  I  R  F  G  A  S  K  F  N  F  Q  L  S  T  F  G  F  R  R  S  *  T :   F  Y  F  L  I  *  I  S  :  N  L  L  K  I  F  *  H  D  G  E  I  A  A  K  D  F  Q  N  *  Y  R  W  I  E  I  Y  *  *  C  K  H  H  H  *  L  L  K  A  S  L  V  Q  Q  G  F  D  L  E  N  I  G  I  H  *  Q  Q  T  A  W  R  Y  R  Y  Y  F  E  I  G  L  T  P  R  E  E  I  W  V  V  N  H  Y  L  P  N  F  K  M  T  L  I  K  *  C  R  I  M  V  T  A  G  L  K  Q  W  K  I  F  L  F  N  Q  F  P  N  M  L  L  Q  K  C  *  M  I  Y  E  G  I  Y  M  V  A  P  T  I  S  K  S  M  I  I  Q  D  L  I  Q  T  E  P  F  L  E  R  G  C  V  D  *  I  F  *  Y  S  T  N  I  F  V  I  V  I  V  I  V  I  *  N  K  Y  *  *  K  Y  R  L  F  T  L  I  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59335" stop="59129"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DWINAERRNLGREPLPTKFQDDVDKVMQDYGDGGIEAMEDLSIQPIPEHVTTEMLNDLRRDLHGGTNY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="83861" PGL_stop="84037"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83861" e_stop="84037"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="83861" e_stop="84037" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83861" stop="84037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345909" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTGTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCGAATCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCT</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  I  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  C  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  R  E  S  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  V  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  A  N  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107M13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="84743" PGL_stop="86388"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84743" e_stop="86388"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="84743" e_stop="86388" e_length="1646"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84743" stop="85073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84950" stop="85508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84954" stop="86388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTATCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCCGAGAAAGCCAAGTCATAACCAGAATTACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCTCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATTTGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCATAACAATGGGCCCTATCGTTTGTCTGTCCATTGCCCCTACCATGTTGTGATGTAGTGTCTCCAGTTTACCCATCACCTCGACCATTTTGGTGACCACCATTACTTCGACCACCGCGTCCTCCAGAATGACGACCTCTTCCATAACCACCTCTACCTCTAACATTTGGAGGTCGGTAACTCTGTTTTGGACAATACCTCTTAATGTGTCCGATCTCCCCACATCCATAACACTCTCTGGGTTCAAGCATAGGTCTCTCAGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTTTTTGATGTTGATGTCGTGGTGAAGTCATCTGGCTTCACTCCTTCCACCTCTATCACGAAGTCTACCACCTCTTGGAAGGATTTTGCCGTAGCCGCTACCTGTAAGGCTGAAATCTGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACTGAAACAAAGTTGAGTGGCATATCTGGATAGTGCATGAAACTTAGCCTCGTATGCATTGACCGACATCCTACCTTAATCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAGCTAGAGAATGAGGCTCAAGTCATAGGTGGTTCCTCTGTTGGTTGACACTCAACATGTGACCTCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCATCAACTCAACACCAAACCGTTCTACTATACACATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATGGGCCAGTAGTCAGACGTGGAAACGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACCTCTCAAACTGGAGGTGTTGGTGCAGAAAACACTGGAGGTGCCTGACCCTGATCAGACAACCCACTAAGATAAGCGAGCACCTGATTTATCATCTCTGGAGTAGGCTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTCCCCATCCTCCCCTTCTCTTATTACCTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCT</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  *  P  E  L  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  S  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  I  W  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  H  N  N  G  P  Y  R  L  S  V  H  C  P  Y  H  V  V  M  *  C  L  Q  F  T  H  H  L  D  H  F  G  D  H  H  Y  F  D  H  R  V  L  Q  N  D  D  L  F  H  N  H  L  Y  L  *  H  L  E  V  G  N  S  V  L  D  N  T  S  *  C  V  R  S  P  H  I  H  N  T  L  W  V  Q  A  *  V  S  Q  R  S  V  D  R  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  L  V  G  L  S  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  F  L  M  L  M  S  W  *  S  H  L  A  S  L  L  P  P  L  S  R  S  L  P  P  L  G  R  I  L  P  *  P  L  P  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  *  N  K  V  E  W  H  I  W  I  V  H  E  T  *  P  R  M  H  *  P  T  S  Y  L  N  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  S  *  R  M  R  L  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  S  T  T  F  W  R  S  L  E  T  D  N  S  S  T  Q  H  Q  T  V  L  L  Y  T  S  C  V  V  A  H  D  S  Q  P  E  N  R  K  H  P  Q  I  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  W  A  S  S  Q  T  W  K  R  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  L  S  N  W  R  C  W  C  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  K  I  S  E  H  L  I  Y  H  L  W  S  R  L  G  W  Q  S  L  I  L  H  L  F  I  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G   </first_frame>
            <second_frame>  I  Y  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  P  R  K  P  S  H  N  Q  N  Y  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  F  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  I  T  M  G  P  I  V  C  L  S  I  A  P  T  M  L  *  C  S  V  S  S  L  P  I  T  S  T  I  L  V  T  T  I  T  S  T  T  A  S  S  R  M  T  T  S  S  I  T  T  S  T  S  N  I  W  R  S  V  T  L  F  W  T  I  P  L  N  V  S  D  L  P  T  S  I  T  L  S  G  F  K  H  R  S  L  R  E  V  L  T  G  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  L  K  P  F  *  C  *  C  R  G  E  V  I  W  L  H  S  F  H  L  Y  H  E  V  Y  H  L  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  L  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  S  G  I  S  G  *  C  M  K  L  S  L  V  C  I  D  R  H  P  T  L  I  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  A  R  E  *  G  S  S  H  R  W  F  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  Q  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  V  S  I  L  R  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  Q  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  S  T  *  F  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  P  H  P  P  L  L  L  L  P  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  </second_frame>
            <third_frame>   S  I  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  R  E  S  Q  V  I  T  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  L  T  K  F  T  K  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  L  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  S  P  V  Y  P  S  P  R  P  F  W  *  P  P  L  L  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  T  F  G  G  R  *  L  C  F  G  Q  Y  L  L  M  C  P  I  S  P  H  P  *  H  S  L  G  S  S  I  G  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  I  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  *  N  L  F  D  V  D  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  C  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  L  K  Q  S  *  V  A  Y  L  D  S  A  *  N  L  A  S  Y  A  L  T  D  I  L  P  *  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  S  S  V  G  *  H  S  T  C  D  L  H  H  I  L  A  F  P  *  N  *  *  L  I  N  S  T  P  N  R  S  T  I  H  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  M  G  Q  *  S  D  V  E  T  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  P  L  K  L  E  V  L  V  Q  K  T  L  E  V  P  D  P  D  Q  T  T  H  *  D  K  R  A  P  D  L  S  S  L  E  *  A  G  V  A  I  P  H  S  A  L  V  H  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  C  P  S  I  R  W  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85182" stop="85436"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSVSSLPITSTILVTTITSTTASSRMTTSSITTSTSNIWRSVTLFWTIPLNVSDLPTSITLSGFKHRSLREVLTGLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86138" stop="86386"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIHTRSHSGCMLYLSNWRCWCRKHWRCLTLIRQPTKISEHLIYHLWSRLGWQSLILHLFISPSSPSLITSSVGGGVTALVSDG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107M13.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85983" stop="86222"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMTVNQKIVSILRFSTLEDWRFQFQELTEKFMLIICHYGPVVRRGNVPMSNEASIRGAIVAACCTSQTGGVGAENTGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 65 chains have been computed
$ 
$ memory statistics:
$ 28480 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 2034 bytes was the average size of a spliced alignment
$ 16776 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1677 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 79 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:35:08
-->
