<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:33:00"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E450584" ref_strand="+" ref_description="SGN-E450584 [cSTS-9-D14]">
      <seq>ctcaatgacacactgacagacttttcgttggctcttactgtgagctacattgcttactacacagctcaagagggagctgaagcttctggtatcttgactctcgtggcgctagggatggtttttgcaatgtcaacaagatacccatagagctggggggaagcagagcatgcatgagttttgggaaatgattgcctacattgcgaatactttaatattcatatcgagcggagttatcatagctcaaagcatgttcagtatcggatatctcgacaacaatacaaggagatcgaggggctatgactttcttctctatatcattcttcaagtagctcgaaccatagttgtttttgcgttctatcctgccctttgctacttcacttatggtttgaattggaaagaagctatcatcatcatatggtctggtttgagaggagctgttggtttggcactctccctatctattaaagatgctagtggtgatccaaagtatctcatctcagaaactggagctatgtttgtgtttcctcactggtggaagtgtgttactgacactcattatcaatggatctaccacacaattacttctaagtgtctgtggtgtggatgctctatcanaaagtgagaaaatcatggtcaattatgcaaagcatcaactattgagaaaagctgaagagttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="16058" stop="22948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16356" g_stop="16418" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16419" i_stop="18101" i_length="1683">
            <donor d_prob="0.652" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18102" g_stop="18154" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="116" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18155" i_stop="18244" i_length="90">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.926" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18245" g_stop="18307" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="180" r_length="64" r_score="0.921"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18308" i_stop="18961" i_length="654">
            <donor d_prob="0.977" d_score="0.90"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18962" g_stop="19006" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="225" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19007" i_stop="19302" i_length="296">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19303" g_stop="19358" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="281" r_length="56" r_score="0.929"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19359" i_stop="20709" i_length="1351">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.461" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20710" g_stop="20894" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="466" r_length="185" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20895" i_stop="21483" i_length="589">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21484" g_stop="21531" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="514" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21532" i_stop="21700" i_length="169">
            <donor d_prob="0.992" d_score="0.98"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21701" g_stop="21808" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="623" r_length="109" r_score="0.944"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21809" i_stop="22592" i_length="784">
            <donor d_prob="0.806" d_score="0.92"/>
            <acceptor a_prob="0.758" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22593" g_stop="22648" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="624" r_stop="679" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E450584" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E450584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16356" e_stop="16418"/>
          <exon e_start="18102" e_stop="18154"/>
          <exon e_start="18245" e_stop="18307"/>
          <exon e_start="18962" e_stop="19006"/>
          <exon e_start="19303" e_stop="19358"/>
          <exon e_start="20710" e_stop="20894"/>
          <exon e_start="21484" e_stop="21531"/>
          <exon e_start="21701" e_stop="21808"/>
          <exon e_start="22593" e_stop="22648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGACACACTGACAGACTTTTCGTTGGCTCTTACTGTGAGCTACATTGCTTACTACACTGTATGTTCCTTGCTGATTTGAATCAGTTGTTATATACATGCACTCAAGCTGCATATTGTCTTTCTAAATGCTGGACAGTATGTTACTTGCTGATTTGAATCAGTTGTTATATACATGCACTCAAGCTGCATATTGTCTTTCTAAATGCTGGACGTGATATTTTGCAATTAACTTGTTTCTAATTGTTTCATTTTGGATTCATATGATTATCAGATTGATTATTGATACCTACCCTTTGATGTGACATTCTATTATTCATCCCCTCTAGAAAATTTAAGGCATGATAATTTGTAGGAAATAGTGATATTCGAGGATGGGGAAACCACTTAGGTTCCCCTTCTATATCTGTGGAGGGAAGGTTTCGATAATGTACTCATTCTCCAAAATGTAGGTTGCGAGGAAGATCCGAGGCCAGCTGGGTTTCTTTGTCACCCAAATAGGAAGAGTTTCTAAAAACTCATTGTGTTTGTGAGCAAGATCACATACAGCATGATAAGTGCTTCACATTAGGGGAACGCAAGTCAGGCAATTGCTTAGTATCGTGTCTGAATTTCATCAGATTTTTTGACCTTCCGAAATTTATTCCGTCTTTGTAAGCTTAACACATCTGATGATTTTTCTTTGGAATATAAAAGGTTAGGTAACATTTAATGCTTTCAGGTACTGGATACAATTTGGTTGAGTATTCTTGATCTAAGCCAACACATAGATTAAGTGCATTCTCTCTCTCTCATACCCACACACCCTCACCCACACACATACACAGACAAGATTAATTCATTACATGTATCCAATTCAAACATTAGATGCATATAACAGACATACCTAATAACATGGATCAATATATATATATATATATATATATATATATATATATTTATATATGCGTGCTTGCATACATACAATTATGTCCGATATCTTAGGAAAGAAGTTAGAATCTGCTCTTTGCCTTTATGTTAGCACTGAGCTAGTCTTTGCTCATAAATTGTTGTTAGATGTGCTCAATACATCATACACCTCCTCCCTTTCCCCCTTCCTAAAAAACTAGAAAAAAGAATCGCGGGCATGATGGTTCAGAAACAGAGAGGGACAGAAGACTAAAACTTGAAATGTGTTCAACTAGAATCTTTCTGGATTTGACATAAAAACTTGAAATGTGTTCAACTAGAAATCTTTCTGGATTTGACATACTATGAAGTCAGTAATCACTACATCCTTCGTTGAATTAGTAGACACCACTTTCATAATGTGCTGCACTTCTTGACGTACAGTTTCAAGAAGTGTGACACTGTAAACTTATCAATTTTTTTGACAACATTTTGATATGCACGATAATTTTCATATTTTTGTTGATAACATATTGACAAATATGATTTATTTTGATGACTTCTCTAGTAATCTAAGATCTTTGACCTGCTTCATTCTACATGATTTTGTAAATCTACCAAGTACATGGTATCATCAAGATTTCAGTATTAAAAAGACCTTCCCTACTGCTCTCTACTTTTAAGGGTGACTTGTTCCAAACTATGTTTATTTGCTAATTCGAGGAGATACTGTATGTTCCCTCGTTTTGCTTTTTCCTTAAAAACTTTTTGCTAGCTCCATTGAAGTCCCATGTGTTTGTTCCAGTGCCATATGTACACCTTTAACCGGATTTTAATGCCTTATTATTGCTTATAGGCTCAAGAGGAAGCTGAAGCTTCTGGTATCTTGACTCTCGTAGCACTAGGGATGTAAGTTGTGTACTTCACTCCTCTTTTACATTCAGATGTTTGTGCGGTAAAGTGTGTAATTCGCTTTCTGATACTGAAACCTATTGATAGGGTTTTTGCAATGTCAA-AGGATACCCATAGAGCTGGGGGAAAGCAGAGCTTGCATGAGTTTTGGTATGTTCTTTCATTGTGATATCTGTTAGCTAGATATAGAAATGTGTAGCAAACCGATGTATAGTGTGATAATTATTGCACAGATTTGAGCTTTGCCAATACCTAATTGTTGCTCTGTTTTGTTGAGGTATTATTATAGATATTGTCTTCTAGGTGAGGCATGTCTAACAGATGTATCTAGGGGAATATGTCATACAATCAAAAGGTTGGAGTACATATACTATAAACAGATGTATCTTGGGGAATATGCTGCTACAGCTACAACAACCCTACCCCTACCTTTCCTGCAACTTCTCTTTTTGTGAACTCTTTACTTTCCTACATGAAGTGTCAGGTTTCAGAAGTTGTCTTTTGTGACTCCTTCCATCATTGATTCTCTCACTCTGTTCTTTTAAGATCTTTTATGCAGTGTTGCTCTCAACCTGTGGGTTATGTGTATTTTTTGATAGGACTGCTTAAAACATCATGTTTAAATCATGTGGATCTTAATAGCTTACTTATTATTCAAAACCATAAACAAATATATGAGCCTTGTCATTATTTGTTTGGCTCCTTTTATGTTTAAGTGCCTTGCTCTGAGAAAGAAGAAACGGGGGAGGGGGCTATAGTAGATCTATTTTTTACACTTAACTTTTCCCACTAATTCTTTTGCAGGGAAATGATTGCCTACATTGCGAATACTTTAATATTCATATTGAGGTAAGACTCGGTAACAGTCCATTAGAAACTAAAGTTGTTTCTTTTCTTTTGTCATAATATCATTTTGTTCCTTTCTATGTTACTTAAGGAGATTTCCTCTAGTTATTGTGCTACTCTTTTCTCAGGTAGTTCTATTTCCCCATTTTCCCTATATTAATATTCTAGTAAGTAGTGTTGTTAGCACTTCATGTTCTAAGCGTACCTGAAGTTCCCTTGATGCCTGGTTGGTTATTATCCTCTTTCTTTTTTTGGTTATTGAATCAATAATGTTGCTCATATGCTCTAACTTCTCGCAGCGGAGTTATCATAGCTCAAAGCATCTTCAGTATCGGAAATCTCGAGAACAATACAGGTAGTATATCCCCCTGAATTTATTAAGTAATGCTTCACTTTTTGTATATGGTTACCAACTGTTCTCCTATTAGTTGAAGTGTGTGGTACATGCTGCACATCACAATAAGTTGGCGTCTCAGTCATTTTTTAAATCATTTTCTTGAGAATCACTAGTAGTTGGTACTTAAGGAGGTGCTGGAACTTGGACAGTGGAAGTCGTGAGACTCATGTCCTGAGCCGATCGTTCTCCTGGTTTTAAATGTTGAATAATTACATTACTAGAAGGAAAACAATTAAATACTTTGGTTAAGTTTTAATGGCTATTAAATAATAAGGGAATTTAGAAAAATAGAGAATGTCCGACTAGGATGTTGAAGTAGTAGGTTGAGTAATTCCTACCACTTACAGAAGTAATAAGTTGATTAATCAAGATCATTGAAGGTAATGAACTAGGAGTATGAAAGTGCGACATAGCCTTTGGTTGTCGGACATGTGAGCGGATGTACTTGAGTAAAAAAATCTAGGACTCAATCTGGGGGATTCCCTAGGAAAAACCAGAGCTATGAGATTCTAGGGAAAGTTGAGGTGTTTGTCACTGGACACTTCAGGAGATGCATATATTGATCACATTTCACATTTCTATATTGAAATAACCAACTAACAAATTGACAGAATCACTGACCAGCACCAAGAGTATGGTCTGAGAGAAAGCTGACCTTGGAAAAGATCAAGCAAACGAAATTAGCAGATTGTCAGTCCAAAAGTATTGGAAGAACAAACAGACTGACTGCGATACCAACTAGCATTGCAGTATCAAACGGAAGTGCCCACCTAAGGCCAAAGACTAAGCACTGTTTCAACCTTATAAATCTAAAGCTCTAGATGGAAAGAAATCAGAGGATACATTAAGGCAGCAACCAATGCAAAGCCTGCAATTAACCAACAATGAACTGGGGCAGAATCTTAGCAAACAACAAAGACTGGGCTATGATACCATATGAAGGCATAGATTTGGTGGAAAACTATCTTTGTTAGGTTGTGCATATCAATAATATTAGTTGTAGAGTTATTTACAAGAAGAGCAAAATAGTGGGTATATACACTTAAGTTTCTAATTTATTTACTATTTATTATTTAACAGACCAAAGAAAGGGGGAAACAGGTAAAGACCCAAAAAATCATCATTGATGCTCATATGCATCACACCTCAGGTTAGGTCATAGGTGTTACTGATCACCTGCCTAGTTTGTGAGATCCCTCCTTAGATGCATTCTTATTGAGATTTTCTGAACATTTTTCTTAGATTCATTCCACTACAATAAATTTCCCAGATCAAGATTTTTTTATTTATTTACACAGTAATATTGTAGGGAGATCGTGGGGCTATGTCTTTCTTCTCTATATCATTCTTCAAGTAGCTCGAACCATAGTTGTTTTTGCGTTCTATCCTGCCCTTTGCTACTTCGGTTATGGTTTGAATTGGAAAGAAGCTATCATTATCATATGGTCTGGTTTGAGAGGAGCTGTTGGTTTGGCACTCTCCCTATCTATTAAAGTAAGCCCTTCTCCGCTCACTTGTGATTCCACATGGTTACCTGTATTATGTAACTTGAGGCTTAGATACAAATGTGCACCGAAGATATGTTTTCATTTCGAGTTGAGAATAACTTTTACTTACATAACGTACTTGTATAGTATGATTTGTACTGGTATGAAATATACTCCTAATAATAAGGTGTATAATGTTTAAATACCAGTACAGTATTCTGCTCCATCAAGTACTGATGCACTTAAAAATAGATAAATAAAATAAAAGTAAATAATATAACAAAATAAAATGGACGCTTTCTGTTTCTAGATCTGAATTGAAGTGCTTCAATTTAATTTGAAGTGACAGACTAAGCGGTTAAACTCAATATCTATGGAGAAGATATCTTTGATTTGATATTGTACATCAATTCGAGTAAGAGCAATAGAACTTATTACGAGTAACCTAATAGTTTGAGAGGATAAGAAGCTGATAATTTTCCCACTTATTTGTCAAGCTTTATGAAGCATATCCACAATGTAGGCACTGGAAGAGGGATGCTATATTTTCTTTTACTTAATAACATTTACACATGGTTTTCTTTCTTAATTTCCAGGATGCTAGTGGTGATCCAAAGTATCTCAGCTCAGAAACTGGAGCTATGGTATGTTTTTATTGACGAATAATTGCAATATAGCAACAGCTCATTTGCCCTGCTTTTGGACCTCATCGATTCATTGCCATAATTTACTTGTAGTTTTTAGGCACCTATTTGAAGCCTAAGCTATCAACTTTCTTTGACATGCAACTGAAACTCTTTCTTTGCGGTACAGTTTGT-TTTCCTCACTGGTGGAAGTGTGTTACTGACACTCATTATCAATGGATCTACCACACAATTACTTCTAAGTCTCTTTGGTATGGATGCTCTATCAGAAAGTGAGGTAAATTTCTGGTGTAATTGAAGTTCTCTTGTATTGAGGAACTTACCTTCCCTTGATATTGTGATTCATGATGTCATTTTATTTAGTTTCACGTTGAGTGTTCAATATCAGTAATTGCCCTTCTCACTGAAAACTTGAAACCCTACCTGTGCTTTTGTGTATATTCAATCTTATCAATCAGATTTTTGGTGTTATGGATTGAGATGAATCAATGATGTTTCGGGGAAAGGAGCATTATTACATAACTTGAAATACAAGTTCCTGTATTTAGTAATTATGTGCAGAATTCTCCAAACATTTTTGGAATGTATACCTTGGTAGACTTGGTAACATTAGTGCAGGAAATTGGATGTGAATTAACCTACACCCCATTTTTACTAATCCAAAGCATCACCTTATTGTTGTTTTTCTCTATTTTATAAGATTGCATTTACTGAAAAAAAGTGAGTACTATGCTACCTGCTGTCTTTAAATCATCGTGTCCTCTGATCCTGACTTTGTTCATCCTCTCAATGCACAAGGATCATCAGCTTGAACTCATAGTTGTCCTATAACCTGAAAATATTTTCATGTAAATCTGAAAAGAAGTATCTCCAGAGGATTAACAGTCAAAATTATATCTACAGAGAATTAGCTAATTCATTCTGGTCTTTGTTAAATTCAAATATGCGGCAAATTATTAAGAAACATACCCGGTGTACTCAACCACAGCTTGTATATCCATATTTGAGATGTGGTCTTTTTGTTGCAAGAGCCATCCGGCTTATACTACAATTTGTTTCAGAAAACCATGGTCAATTATGCAAAGCATCAACTATTGAGAAAAGCTGAAGAGTTTTC</genome_strand>
        <mrna_strand>CTCAATGACACACTGACAGACTTTTCGTTGGCTCTTACTGTGAGCTACATTGCTTACTACACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAGAGGGAGCTGAAGCTTCTGGTATCTTGACTCTCGTGGCGCTAGGGAT..........................................................................................GGTTTTTGCAATGTCAACAAGATACCCATAGAGCTGGGGGGAAGCAGAGCATGCATGAGTTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATTGCCTACATTGCGAATACTTTAATATTCATATCGAG........................................................................................................................................................................................................................................................................................................CGGAGTTATCATAGCTCAAAGCATGTTCAGTATCGGATATCTCGACAACAATACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATCGAGGGGCTATGACTTTCTTCTCTATATCATTCTTCAAGTAGCTCGAACCATAGTTGTTTTTGCGTTCTATCCTGCCCTTTGCTACTTCACTTATGGTTTGAATTGGAAAGAAGCTATCATCATCATATGGTCTGGTTTGAGAGGAGCTGTTGGTTTGGCACTCTCCCTATCTATTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAGTGGTGATCCAAAGTATCTCATCTCAGAAACTGGAGCTATG.........................................................................................................................................................................TTTGTGTTTCCTCACTGGTGGAAGTGTGTTACTGACACTCATTATCAATGGATCTACCACACAATTACTTCTAAGTGTCTGTGGTGTGGATGCTCTATCANAAAGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCATGGTCAATTATGCAAAGCATCAACTATTGAGAAAAGCTGAAGAGTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E423500" ref_strand="+" ref_description="SGN-E423500 [STM-42-I21]">
      <seq>tacaatgacacactgacagacttttcgttggctcttactgtgagctacattgcttactacacagctcaagagggagctgaagcttctggtatcttgactctcgtggcgctagggatggtttttgcaatgtcaaaggatacccatagagctggggggaagcagagcatgcatgagttttgggaaatgattgcctacattgcgaatactttaatattcatattgagcggagttatcatagctcaaagcatcttcagtatcggatatctcgacaacaatacagggagatcgtggggctatgtctttcttctctatatcattcttcaagtagctcgaaccatagttgtttttgcgttctatcctgccctttgctacttcggttatggtttgaattggaaagaagctatcatcatcatatggtctggtttgagaggagctgttggtttggcactctccctatctattaaagatgctagtggtgatccaaagtatctcagctcagaaactggagctatgtttgttttcctcactggtggaagtgtgttactgacactcattatcaatggatctaccacacaattacttctaagtctctttggtatggatgctctatcagaaagtgagaaaatcatggtcaattatgcaaagcatcaactattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="16056" stop="22928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16356" g_stop="16418" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16419" i_stop="18101" i_length="1683">
            <donor d_prob="0.652" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18102" g_stop="18154" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="116" r_length="53" r_score="0.943"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18155" i_stop="18244" i_length="90">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18245" g_stop="18307" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="179" r_length="63" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18308" i_stop="18961" i_length="654">
            <donor d_prob="0.977" d_score="0.96"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18962" g_stop="19006" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="224" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19007" i_stop="19302" i_length="296">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19303" g_stop="19358" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="280" r_length="56" r_score="0.964"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19359" i_stop="20709" i_length="1351">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.461" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20710" g_stop="20894" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="465" r_length="185" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20895" i_stop="21483" i_length="589">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21484" g_stop="21531" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="513" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21532" i_stop="21700" i_length="169">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21701" g_stop="21808" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="621" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21809" i_stop="22592" i_length="784">
            <donor d_prob="0.806" d_score="1.00"/>
            <acceptor a_prob="0.758" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22593" g_stop="22628" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="657" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E423500" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E423500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16356" e_stop="16418"/>
          <exon e_start="18102" e_stop="18154"/>
          <exon e_start="18245" e_stop="18307"/>
          <exon e_start="18962" e_stop="19006"/>
          <exon e_start="19303" e_stop="19358"/>
          <exon e_start="20710" e_stop="20894"/>
          <exon e_start="21484" e_stop="21531"/>
          <exon e_start="21701" e_stop="21808"/>
          <exon e_start="22593" e_stop="22628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAATGACACACTGACAGACTTTTCGTTGGCTCTTACTGTGAGCTACATTGCTTACTACACTGTATGTTCCTTGCTGATTTGAATCAGTTGTTATATACATGCACTCAAGCTGCATATTGTCTTTCTAAATGCTGGACAGTATGTTACTTGCTGATTTGAATCAGTTGTTATATACATGCACTCAAGCTGCATATTGTCTTTCTAAATGCTGGACGTGATATTTTGCAATTAACTTGTTTCTAATTGTTTCATTTTGGATTCATATGATTATCAGATTGATTATTGATACCTACCCTTTGATGTGACATTCTATTATTCATCCCCTCTAGAAAATTTAAGGCATGATAATTTGTAGGAAATAGTGATATTCGAGGATGGGGAAACCACTTAGGTTCCCCTTCTATATCTGTGGAGGGAAGGTTTCGATAATGTACTCATTCTCCAAAATGTAGGTTGCGAGGAAGATCCGAGGCCAGCTGGGTTTCTTTGTCACCCAAATAGGAAGAGTTTCTAAAAACTCATTGTGTTTGTGAGCAAGATCACATACAGCATGATAAGTGCTTCACATTAGGGGAACGCAAGTCAGGCAATTGCTTAGTATCGTGTCTGAATTTCATCAGATTTTTTGACCTTCCGAAATTTATTCCGTCTTTGTAAGCTTAACACATCTGATGATTTTTCTTTGGAATATAAAAGGTTAGGTAACATTTAATGCTTTCAGGTACTGGATACAATTTGGTTGAGTATTCTTGATCTAAGCCAACACATAGATTAAGTGCATTCTCTCTCTCTCATACCCACACACCCTCACCCACACACATACACAGACAAGATTAATTCATTACATGTATCCAATTCAAACATTAGATGCATATAACAGACATACCTAATAACATGGATCAATATATATATATATATATATATATATATATATATATTTATATATGCGTGCTTGCATACATACAATTATGTCCGATATCTTAGGAAAGAAGTTAGAATCTGCTCTTTGCCTTTATGTTAGCACTGAGCTAGTCTTTGCTCATAAATTGTTGTTAGATGTGCTCAATACATCATACACCTCCTCCCTTTCCCCCTTCCTAAAAAACTAGAAAAAAGAATCGCGGGCATGATGGTTCAGAAACAGAGAGGGACAGAAGACTAAAACTTGAAATGTGTTCAACTAGAATCTTTCTGGATTTGACATAAAAACTTGAAATGTGTTCAACTAGAAATCTTTCTGGATTTGACATACTATGAAGTCAGTAATCACTACATCCTTCGTTGAATTAGTAGACACCACTTTCATAATGTGCTGCACTTCTTGACGTACAGTTTCAAGAAGTGTGACACTGTAAACTTATCAATTTTTTTGACAACATTTTGATATGCACGATAATTTTCATATTTTTGTTGATAACATATTGACAAATATGATTTATTTTGATGACTTCTCTAGTAATCTAAGATCTTTGACCTGCTTCATTCTACATGATTTTGTAAATCTACCAAGTACATGGTATCATCAAGATTTCAGTATTAAAAAGACCTTCCCTACTGCTCTCTACTTTTAAGGGTGACTTGTTCCAAACTATGTTTATTTGCTAATTCGAGGAGATACTGTATGTTCCCTCGTTTTGCTTTTTCCTTAAAAACTTTTTGCTAGCTCCATTGAAGTCCCATGTGTTTGTTCCAGTGCCATATGTACACCTTTAACCGGATTTTAATGCCTTATTATTGCTTATAGGCTCAAGAGGAAGCTGAAGCTTCTGGTATCTTGACTCTCGTAGCACTAGGGATGTAAGTTGTGTACTTCACTCCTCTTTTACATTCAGATGTTTGTGCGGTAAAGTGTGTAATTCGCTTTCTGATACTGAAACCTATTGATAGGGTTTTTGCAATGTCAAAGGATACCCATAGAGCTGGGGGAAAGCAGAGCTTGCATGAGTTTTGGTATGTTCTTTCATTGTGATATCTGTTAGCTAGATATAGAAATGTGTAGCAAACCGATGTATAGTGTGATAATTATTGCACAGATTTGAGCTTTGCCAATACCTAATTGTTGCTCTGTTTTGTTGAGGTATTATTATAGATATTGTCTTCTAGGTGAGGCATGTCTAACAGATGTATCTAGGGGAATATGTCATACAATCAAAAGGTTGGAGTACATATACTATAAACAGATGTATCTTGGGGAATATGCTGCTACAGCTACAACAACCCTACCCCTACCTTTCCTGCAACTTCTCTTTTTGTGAACTCTTTACTTTCCTACATGAAGTGTCAGGTTTCAGAAGTTGTCTTTTGTGACTCCTTCCATCATTGATTCTCTCACTCTGTTCTTTTAAGATCTTTTATGCAGTGTTGCTCTCAACCTGTGGGTTATGTGTATTTTTTGATAGGACTGCTTAAAACATCATGTTTAAATCATGTGGATCTTAATAGCTTACTTATTATTCAAAACCATAAACAAATATATGAGCCTTGTCATTATTTGTTTGGCTCCTTTTATGTTTAAGTGCCTTGCTCTGAGAAAGAAGAAACGGGGGAGGGGGCTATAGTAGATCTATTTTTTACACTTAACTTTTCCCACTAATTCTTTTGCAGGGAAATGATTGCCTACATTGCGAATACTTTAATATTCATATTGAGGTAAGACTCGGTAACAGTCCATTAGAAACTAAAGTTGTTTCTTTTCTTTTGTCATAATATCATTTTGTTCCTTTCTATGTTACTTAAGGAGATTTCCTCTAGTTATTGTGCTACTCTTTTCTCAGGTAGTTCTATTTCCCCATTTTCCCTATATTAATATTCTAGTAAGTAGTGTTGTTAGCACTTCATGTTCTAAGCGTACCTGAAGTTCCCTTGATGCCTGGTTGGTTATTATCCTCTTTCTTTTTTTGGTTATTGAATCAATAATGTTGCTCATATGCTCTAACTTCTCGCAGCGGAGTTATCATAGCTCAAAGCATCTTCAGTATCGGAAATCTCGAGAACAATACAGGTAGTATATCCCCCTGAATTTATTAAGTAATGCTTCACTTTTTGTATATGGTTACCAACTGTTCTCCTATTAGTTGAAGTGTGTGGTACATGCTGCACATCACAATAAGTTGGCGTCTCAGTCATTTTTTAAATCATTTTCTTGAGAATCACTAGTAGTTGGTACTTAAGGAGGTGCTGGAACTTGGACAGTGGAAGTCGTGAGACTCATGTCCTGAGCCGATCGTTCTCCTGGTTTTAAATGTTGAATAATTACATTACTAGAAGGAAAACAATTAAATACTTTGGTTAAGTTTTAATGGCTATTAAATAATAAGGGAATTTAGAAAAATAGAGAATGTCCGACTAGGATGTTGAAGTAGTAGGTTGAGTAATTCCTACCACTTACAGAAGTAATAAGTTGATTAATCAAGATCATTGAAGGTAATGAACTAGGAGTATGAAAGTGCGACATAGCCTTTGGTTGTCGGACATGTGAGCGGATGTACTTGAGTAAAAAAATCTAGGACTCAATCTGGGGGATTCCCTAGGAAAAACCAGAGCTATGAGATTCTAGGGAAAGTTGAGGTGTTTGTCACTGGACACTTCAGGAGATGCATATATTGATCACATTTCACATTTCTATATTGAAATAACCAACTAACAAATTGACAGAATCACTGACCAGCACCAAGAGTATGGTCTGAGAGAAAGCTGACCTTGGAAAAGATCAAGCAAACGAAATTAGCAGATTGTCAGTCCAAAAGTATTGGAAGAACAAACAGACTGACTGCGATACCAACTAGCATTGCAGTATCAAACGGAAGTGCCCACCTAAGGCCAAAGACTAAGCACTGTTTCAACCTTATAAATCTAAAGCTCTAGATGGAAAGAAATCAGAGGATACATTAAGGCAGCAACCAATGCAAAGCCTGCAATTAACCAACAATGAACTGGGGCAGAATCTTAGCAAACAACAAAGACTGGGCTATGATACCATATGAAGGCATAGATTTGGTGGAAAACTATCTTTGTTAGGTTGTGCATATCAATAATATTAGTTGTAGAGTTATTTACAAGAAGAGCAAAATAGTGGGTATATACACTTAAGTTTCTAATTTATTTACTATTTATTATTTAACAGACCAAAGAAAGGGGGAAACAGGTAAAGACCCAAAAAATCATCATTGATGCTCATATGCATCACACCTCAGGTTAGGTCATAGGTGTTACTGATCACCTGCCTAGTTTGTGAGATCCCTCCTTAGATGCATTCTTATTGAGATTTTCTGAACATTTTTCTTAGATTCATTCCACTACAATAAATTTCCCAGATCAAGATTTTTTTATTTATTTACACAGTAATATTGTAGGGAGATCGTGGGGCTATGTCTTTCTTCTCTATATCATTCTTCAAGTAGCTCGAACCATAGTTGTTTTTGCGTTCTATCCTGCCCTTTGCTACTTCGGTTATGGTTTGAATTGGAAAGAAGCTATCATTATCATATGGTCTGGTTTGAGAGGAGCTGTTGGTTTGGCACTCTCCCTATCTATTAAAGTAAGCCCTTCTCCGCTCACTTGTGATTCCACATGGTTACCTGTATTATGTAACTTGAGGCTTAGATACAAATGTGCACCGAAGATATGTTTTCATTTCGAGTTGAGAATAACTTTTACTTACATAACGTACTTGTATAGTATGATTTGTACTGGTATGAAATATACTCCTAATAATAAGGTGTATAATGTTTAAATACCAGTACAGTATTCTGCTCCATCAAGTACTGATGCACTTAAAAATAGATAAATAAAATAAAAGTAAATAATATAACAAAATAAAATGGACGCTTTCTGTTTCTAGATCTGAATTGAAGTGCTTCAATTTAATTTGAAGTGACAGACTAAGCGGTTAAACTCAATATCTATGGAGAAGATATCTTTGATTTGATATTGTACATCAATTCGAGTAAGAGCAATAGAACTTATTACGAGTAACCTAATAGTTTGAGAGGATAAGAAGCTGATAATTTTCCCACTTATTTGTCAAGCTTTATGAAGCATATCCACAATGTAGGCACTGGAAGAGGGATGCTATATTTTCTTTTACTTAATAACATTTACACATGGTTTTCTTTCTTAATTTCCAGGATGCTAGTGGTGATCCAAAGTATCTCAGCTCAGAAACTGGAGCTATGGTATGTTTTTATTGACGAATAATTGCAATATAGCAACAGCTCATTTGCCCTGCTTTTGGACCTCATCGATTCATTGCCATAATTTACTTGTAGTTTTTAGGCACCTATTTGAAGCCTAAGCTATCAACTTTCTTTGACATGCAACTGAAACTCTTTCTTTGCGGTACAGTTTGTTTTCCTCACTGGTGGAAGTGTGTTACTGACACTCATTATCAATGGATCTACCACACAATTACTTCTAAGTCTCTTTGGTATGGATGCTCTATCAGAAAGTGAGGTAAATTTCTGGTGTAATTGAAGTTCTCTTGTATTGAGGAACTTACCTTCCCTTGATATTGTGATTCATGATGTCATTTTATTTAGTTTCACGTTGAGTGTTCAATATCAGTAATTGCCCTTCTCACTGAAAACTTGAAACCCTACCTGTGCTTTTGTGTATATTCAATCTTATCAATCAGATTTTTGGTGTTATGGATTGAGATGAATCAATGATGTTTCGGGGAAAGGAGCATTATTACATAACTTGAAATACAAGTTCCTGTATTTAGTAATTATGTGCAGAATTCTCCAAACATTTTTGGAATGTATACCTTGGTAGACTTGGTAACATTAGTGCAGGAAATTGGATGTGAATTAACCTACACCCCATTTTTACTAATCCAAAGCATCACCTTATTGTTGTTTTTCTCTATTTTATAAGATTGCATTTACTGAAAAAAAGTGAGTACTATGCTACCTGCTGTCTTTAAATCATCGTGTCCTCTGATCCTGACTTTGTTCATCCTCTCAATGCACAAGGATCATCAGCTTGAACTCATAGTTGTCCTATAACCTGAAAATATTTTCATGTAAATCTGAAAAGAAGTATCTCCAGAGGATTAACAGTCAAAATTATATCTACAGAGAATTAGCTAATTCATTCTGGTCTTTGTTAAATTCAAATATGCGGCAAATTATTAAGAAACATACCCGGTGTACTCAACCACAGCTTGTATATCCATATTTGAGATGTGGTCTTTTTGTTGCAAGAGCCATCCGGCTTATACTACAATTTGTTTCAGAAAACCATGGTCAATTATGCAAAGCATCAACTATTG</genome_strand>
        <mrna_strand>TACAATGACACACTGACAGACTTTTCGTTGGCTCTTACTGTGAGCTACATTGCTTACTACACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAAGAGGGAGCTGAAGCTTCTGGTATCTTGACTCTCGTGGCGCTAGGGAT..........................................................................................GGTTTTTGCAATGTCAAAGGATACCCATAGAGCTGGGGGGAAGCAGAGCATGCATGAGTTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGATTGCCTACATTGCGAATACTTTAATATTCATATTGAG........................................................................................................................................................................................................................................................................................................CGGAGTTATCATAGCTCAAAGCATCTTCAGTATCGGATATCTCGACAACAATACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGATCGTGGGGCTATGTCTTTCTTCTCTATATCATTCTTCAAGTAGCTCGAACCATAGTTGTTTTTGCGTTCTATCCTGCCCTTTGCTACTTCGGTTATGGTTTGAATTGGAAAGAAGCTATCATCATCATATGGTCTGGTTTGAGAGGAGCTGTTGGTTTGGCACTCTCCCTATCTATTAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAGTGGTGATCCAAAGTATCTCAGCTCAGAAACTGGAGCTATG.........................................................................................................................................................................TTTGTTTTCCTCACTGGTGGAAGTGTGTTACTGACACTCATTATCAATGGATCTACCACACAATTACTTCTAAGTCTCTTTGGTATGGATGCTCTATCAGAAAGTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCATGGTCAATTATGCAAAGCATCAACTATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588688" ref_strand="-" ref_description="SGN-E588688 [42246]">
      <seq>attaagctggagttgatcatttcagttctggcccgtggaaatggcgtagaagaactgttgtggaaggagtgcaccattgttgtgtctaagctcttggcgcctgatatatttaagaaattctcaatgcaagaagtaagaagtattcttgatgagagatcagtcatgaatactttctcaagtcaagaagtaatagaaacttctcatcattctatcaacttcctgttaagtggttgcttgagagatcaaagtaccaaacaacttattgagtgcccagcagtattaccatgttccattttgagtgaaagcatcccgtacagaagcgccaatggaacggctgagagttctgggtcatgttcttattcaaagtacaaagttgtgaaaccagcaaggatagttcgaatagacatttcagcagtatgagagttggccatgcaaaactttagaaagaagcaaaaattggtaagccaaggagataacacaatatctaacattgaattgcgtggattagttggtcgtagctttttcatctttcaagagtgtacttgctgatgttctatgacttgacttttccatcacgaaaaagctgtaaagttacttggcttcattattttctatgccagggctaagattgtatgcccattctatttctgatgtcagtgcaatttacactgcttgataatttatgtaaaagtctgcagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="25183" stop="27204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25483" g_stop="25548" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.894"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25549" i_stop="25824" i_length="276">
            <donor d_prob="0.947" d_score="0.90"/>
            <acceptor a_prob="0.514" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25825" g_stop="26092" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="334" r_length="268" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26093" i_stop="26533" i_length="441">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.722" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26534" g_stop="26896" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="695" r_length="361" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E588688" ref_strand="-">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E588688" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25483" e_stop="25548"/>
          <exon e_start="25825" e_stop="26092"/>
          <exon e_start="26534" e_stop="26896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGCTGGAGTGGGTCATTTCAGTACTGGCCCGTGATAATGCAGTAGAAGAACTGTTGTGGAAGGTGATCTTTAACAATCTTTCCAACACTCTTAGTGCAACTCAAGCATTTATGTTATCAGAAACATCACAATAAGTACTGTTGTAGTTGAACAGACATGAGAAATGCTGCTGTCTAGAGTGGCTTCAGATAACTGAATTTTACTTTCTATTTATAAATCAAAGGTTTCATTTATATATAAAATTCATGAAAAAGGAAAAGTTTCGCTATTTAGTTTGACAAGTTCTTCATAAACAAGGTACAATATTTTCGGAATTTAATGATCAATCTCATGTGCAGGAGTGCACCGTTGTTGTGTCTAAGCTCTTGGCACCTGATATATTTAAGAAATTCTCAATGCAAGAAGTAAGAAGTATTATTGATGAAAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCCATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCGAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTAAGTGAAAGCATCCCGTACAGCAGCGCCAATGGAACGGGTAGGTTTCCTCATTATAATGTCTCCTCATCTGAACTGTTGATACCAATGTTTAATTCCTTGTTAGTTTGATCAGTAACACTCAGCAGAAAAAGTGATTTTTCTTCATCTTCTTTGTTGTGACTGTCACGTCGTCAAATCCTCATTAGCCTGCACGCCTTCTTCTTGCTGTTTATAAACTTTGTTGTCATAAGGTTCTACTCGAGTAGGGTTGTTTTTGCATTGTCTGGATGCTCATGAATATATGTTTCTTAAAGAAAAAAAAAAGGAAAGAAAATGGTTTTAGAACTTACCTGACTGCTAGTTGTCTCCCACTTTTAAGTTGACTTCTTTCTTGCATTAAGCAATACTTAGAACCTAAGGGAAGTAACTATCAAGGGTGTCTTCCTTGAAGTATTCCTGTAGTATGGTTTTCTAACTTAGATGCTTGGTGCTTTTGTAGCTGAGAGTTTTGGATCATGTTCTTATTCGAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATCGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAATTTTAGAAAGAAGTAAAAATTGGTAAGCCAAGGAGATAACACAATGTCTAACTTTGAATTGCATGGATTAGGTTGGTCATAGCTTTTTCATCTTTCAAGAGCGTACTTGCTGTCGTTCTATGACTTCACTTTTCCATCATGAAAAAGCTGTAAAGTTACTTGGCTTCATTTTTTTCTTTGTCGGGGCTAAGATTGTCTGCCCATTCTATTTCTGACATCAGTGCAATTTACACTGCTTGATAATTTATGTAAAAAGTCTG</genome_strand>
        <mrna_strand>ATTAAGCTGGAGTTGATCATTTCAGTTCTGGCCCGTGGAAATGGCGTAGAAGAACTGTTGTGGAAG....................................................................................................................................................................................................................................................................................GAGTGCACCATTGTTGTGTCTAAGCTCTTGGCGCCTGATATATTTAAGAAATTCTCAATGCAAGAAGTAAGAAGTATTCTTGATGAGAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCTATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCAAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTGAGTGAAAGCATCCCGTACAGAAGCGCCAATGGAACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAGTTCTGGGTCATGTTCTTATTCAAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATAGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAACTTTAGAAAGAAGCAAAAATTGGTAAGCCAAGGAGATAACACAATATCTAACATTGAATTGCGTGGATTA-GTTGGTCGTAGCTTTTTCATCTTTCAAGAGTGTACTTGCTGATGTTCTATGACTTGACTTTTCCATCACGAAAAAGCTGTAAAGTTACTTGGCTTCATTATTTTCTATGCCAGGGCTAAGATTGTATGCCCATTCTATTTCTGATGTCAGTGCAATTTACACTGCTTGATAATTTATGT-AAAAGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351779" ref_strand="+" ref_description="SGN-E351779 [cTOS-8-L8]">
      <seq>tgatgaaagatcagtcatgaatactttctcaagtcaagaagtaatagaaacttctcatcattccatcaacttcctgttaagtggttgcttgagagatcaaagtaccgaacaacttattgagtgcccagcagtattaccatgttccattttaagtgaaagcatcccgtacagcagcgccaatggaacggctgagagttttggatcatgttcttattcgaagtacaaagttgtgaaaccagcaaggatagttcgaatcgacatttcagcagtatgagagttggccatgcaaaattttagagagaagtaaaaattggtaagccaaggagataacacaatgtctaactttgaattgcatggattangttggtcatagctttttcatctttcaagagcgtacttgctgtcgttctatgacttcacttttccatcatngaaaagctgtaaaagtacttggcttcatttttctctttgtcggggctaagattgtctngccattctatttctgacatcagtgcaatttacactgcttgataaattatgtaaaaagtctgccacttgncactataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="25605" stop="27214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25905" g_stop="26092" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26093" i_stop="26533" i_length="441">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.722" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26534" g_stop="26919" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="574" r_length="386" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E351779" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351779" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25905" e_stop="26092"/>
          <exon e_start="26534" e_stop="26919"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGAAAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCCATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCGAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTAAGTGAAAGCATCCCGTACAGCAGCGCCAATGGAACGGGTAGGTTTCCTCATTATAATGTCTCCTCATCTGAACTGTTGATACCAATGTTTAATTCCTTGTTAGTTTGATCAGTAACACTCAGCAGAAAAAGTGATTTTTCTTCATCTTCTTTGTTGTGACTGTCACGTCGTCAAATCCTCATTAGCCTGCACGCCTTCTTCTTGCTGTTTATAAACTTTGTTGTCATAAGGTTCTACTCGAGTAGGGTTGTTTTTGCATTGTCTGGATGCTCATGAATATATGTTTCTTAAAGAAAAAAAAAAGGAAAGAAAATGGTTTTAGAACTTACCTGACTGCTAGTTGTCTCCCACTTTTAAGTTGACTTCTTTCTTGCATTAAGCAATACTTAGAACCTAAGGGAAGTAACTATCAAGGGTGTCTTCCTTGAAGTATTCCTGTAGTATGGTTTTCTAACTTAGATGCTTGGTGCTTTTGTAGCTGAGAGTTTTGGATCATGTTCTTATTCGAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATCGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAATTTTAGAAAGAAGTAAAAATTGGTAAGCCAAGGAGATAACACAATGTCTAACTTTGAATTGCATGGATTAGGTTGGTCATAGCTTTTTCATCTTTCAAGAGCGTACTTGCTGTCGTTCTATGACTTCACTTTTCCATCATGAAAAAGCTGTAAAGTTACTTGGCTTCATTTTTTTCTTTGTCGGGGCTAAGATTGTCTGCCCATTCTATTTCTGACATCAGTGCAATTTACACTGCTTGATAATTTATGTAAAAAGTCTGCCACTTGCAACTATAATATTTAC</genome_strand>
        <mrna_strand>TGATGAAAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCCATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCGAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTAAGTGAAAGCATCCCGTACAGCAGCGCCAATGGAACGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGAGTTTTGGATCATGTTCTTATTCGAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATCGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAATTTTAGAGAGAAGTAAAAATTGGTAAGCCAAGGAGATAACACAATGTCTAACTTTGAATTGCATGGATTANGTTGGTCATAGCTTTTTCATCTTTCAAGAGCGTACTTGCTGTCGTTCTATGACTTCACTTTTCCATCATNGAAAAGCTGTAAAAGTACTTGGCTTCATTTTTCTCTTTGTCGGGGCTAAGATTGTCTNGCCATTCTATTTCTGACATCAGTGCAATTTACACTGCTTGATAAATTATGTAAAAAGTCTGCCACTTGNCACTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721723" ref_strand="+" ref_description="SGN-E721723 [FC15AB08]">
      <seq>cggccgaattgatactcttcttaatctttttctctctctaagaagcttcctcgaagcttagtaatggagtcctacttaaacctcctccatttcttcttcctttcaacctccttcatcaattcctattccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccaaatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcngagataaaagaaaaaaaatagaaattgtcttaatttattttatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43767" stop="45193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44063" g_stop="44893" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="831" r_length="831" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E721723" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44063" e_stop="44893"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCCAATAAATACTCTTCTTAATCTTTTTCTCTCTCTAAGAAGCTTCCTCGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTC</genome_strand>
        <mrna_strand>CGGCCGAATTGATACTCTTCTTAATCTTTTTCTCTCTCTAAGAAGCTTCCTCGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAAATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCNGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E297184" ref_strand="+" ref_description="SGN-E297184 [cLET-29-K18]">
      <seq>cgaagcttagtaatggagtcctacttaaacctcctccatttcttcttcctttcaacctccttcatcaattcctattccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaagaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagccgagattaaagaaaaaaaatagaaaatggcttaatttattttatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43814" stop="45195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44114" g_stop="44244" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44245" i_stop="44508" i_length="264">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44509" g_stop="44895" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="518" r_length="387" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E297184" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44114" e_stop="44244"/>
          <exon e_start="44509" e_stop="44895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTT</genome_strand>
        <mrna_strand>CGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAA........................................................................................................................................................................................................................................................................ATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAAGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCCGAGATTAAAGAAAAAAAATAGAAAATGGCTTAATTTATTTTATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E712699" ref_strand="+" ref_description="SGN-E712699 [FB05CC10]">
      <seq>aattcctattccttctccaaattctcaaccatgaagttccccgcaaacttcttcaagtccaaaaaatccacatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccagcgaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggcaagattacgaaggacaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgacaacggagatggatgtattagtttaaagaattttgaaactattacctcggcgtttgagtccacgccgacgtctgcagcgggagatgcaggtgagatgagagatgcgtttgatttcttctatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtggttataatgatcggcgatgaacggtgcacattagatgaatgtgagcgtatgataacaagtgtagatataaatggagatggattcgtctgcttcaacgatttctgtcttatgatggaactgcagagataccagatgatatactagaagttgtcttaatctatttaatttcttgtgttacttgagaaaaagggttgagagattaattaggacccctgagataggtcaatctaatggcgacgattgatctatatttggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43880" stop="45282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44180" g_stop="44982" g_length="803"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="804" r_length="804" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E712699" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E712699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44180" e_stop="44982"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGA-AAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAG</genome_strand>
        <mrna_strand>AATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCGCAAACTTCTTCAAGTCCAAAAAATCCACATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAGCGAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGCAAGATTACGAAGGACAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGACAACGGAGATGGATGTATTAGTTTAAAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCCACGCCGACGTCTGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCTATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGGTTATAATGATCGGCGATGAACGGTGCACATTAGATGAATGTGAGCGTATGATAACAAGTGTAGATATAAATGGAGATGGATTCGTCTGCTTCAACGATTTCTGTCTTATGATGGAACTGCAGAGATACCAGATGATATACTAGAAGTTGTCTTAATCTATTTAATTTCTTGTGTTACTTGAGAAAAAGGGTTGAGAGATTAATTAGGACCCCTGAGATAGGTCAATCTAATGGCGACGATTGATCTATATTTGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E341457" ref_strand="+" ref_description="SGN-E341457 [cTOE-23-A16]">
      <seq>ctattccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43885" stop="45044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44185" g_stop="44744" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E341457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44185" e_stop="44744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATG</genome_strand>
        <mrna_strand>CTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E235648" ref_strand="+" ref_description="SGN-E235648 [cLED-15-C10]">
      <seq>ctattccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43885" stop="45009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44185" g_stop="44709" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E235648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44185" e_stop="44709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGA</genome_strand>
        <mrna_strand>CTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214193" ref_strand="+" ref_description="SGN-E214193 [cLEC-77-M3]">
      <seq>tattccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43886" stop="44940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44186" g_stop="44640" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E214193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44186" e_stop="44640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGG</genome_strand>
        <mrna_strand>TATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E334912" ref_strand="+" ref_description="SGN-E334912 [cTOE-3-L24]">
      <seq>ttccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43888" stop="44964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44188" g_stop="44664" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="477" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E334912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E334912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44188" e_stop="44664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGC</genome_strand>
        <mrna_strand>TTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337530" ref_strand="+" ref_description="SGN-E337530 [cTOE-11-L22]">
      <seq>ttccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43888" stop="44945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44188" g_stop="44645" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E337530" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337530" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44188" e_stop="44645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATG</genome_strand>
        <mrna_strand>TTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E252679" ref_strand="+" ref_description="SGN-E252679 [cLEG-16-K15]">
      <seq>ccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43890" stop="45047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44190" g_stop="44747" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E252679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44190" e_stop="44747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAAC</genome_strand>
        <mrna_strand>CCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247753" ref_strand="+" ref_description="SGN-E247753 [cLEF-42-L13]">
      <seq>ccttctccaaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43890" stop="45004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44190" g_stop="44704" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E247753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44190" e_stop="44704"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACC</genome_strand>
        <mrna_strand>CCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255626" ref_strand="+" ref_description="SGN-E255626 [cLEG-36-F9]">
      <seq>ccttctccaaattcttttccatgtttttccccaaaaacttcttcaagggcaaaaagaggcagattcctttgccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaagaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattaccttggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43916" stop="44986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44190" g_stop="44686" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E255626" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44190" e_stop="44686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAA-ATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGAT</genome_strand>
        <mrna_strand>CCTTCTCCAAATTCTTTTCCATGTTTTTCCCCAAAAACTTCTTCAAGGGCAAAAAGAGGCAGATTCCTTTGCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAAGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTTGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273943" ref_strand="+" ref_description="SGN-E273943 [cLEN-7-P23]">
      <seq>cttctccaaattctcaaccatgaagtgccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgattcgacaccgacgtcggcagcgggagatgcatgtgagatgagagatgcgtttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43891" stop="44974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44191" g_stop="44674" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E273943" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44191" e_stop="44674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTC</genome_strand>
        <mrna_strand>CTTCTCCAAATTCTCAACCATGAAGTGCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGATTCGACACCGACGTCGGCAGCGGGAGATGCATGTGAGATGAGAGATGCGTTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347303" ref_strand="+" ref_description="SGN-E347303 [cTOF-33-G13]">
      <seq>caaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43897" stop="45145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44197" g_stop="44845" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E347303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44197" e_stop="44845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAG</genome_strand>
        <mrna_strand>CAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E283835" ref_strand="+" ref_description="SGN-E283835 [cLES-1-L6]">
      <seq>aaattctcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43898" stop="44946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44198" g_stop="44646" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E283835" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44198" e_stop="44646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGC</genome_strand>
        <mrna_strand>AAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277566" ref_strand="+" ref_description="SGN-E277566 [cLER-6-E4]">
      <seq>tcaaccatgaagttccccaaaaacttcttcaagtccaaaaaatccagatccctttcccgatccgatgatccatcttactcatcttcctcctcctcctccaacaaaggcggtagcgtcggaggaatttctactcctacgagcgtgttacctactttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgctgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43904" stop="44952"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44204" g_stop="44652" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E277566" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44204" e_stop="44652"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGA</genome_strand>
        <mrna_strand>TCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGCTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E406400" ref_strand="+" ref_description="SGN-E406400 [PPI-3-N19]">
      <seq>aagttccccaaaaacttcttcaagtccaaaaaatcccgctccctttccagatccgatgatccgtcttactcctcttcatcttcctcttccaacaaaggcggcggctgcggaggaggaggaatttctactcctacgagcgtattaccgactttatccaacgagatctcagctgacgactggtccgagatctctaccgccggagtttactccgatctcgttcaagcgttttccatcatcgataacggagacggtaagataaggaaggagcaactcgaagcgattttaagcagagttggaggtaaatctccaccgactgaagaggaacttgtgttgttgcttgatgaattggataagaacggagatggatgtattagtttagagaatttcgaaactatcacctcggcgtttgaaccgacgccgccgtcggcggcggaagatgcaggtgagatgagagatgcgtttgatttcttcgacgaggaccacgacgggaaaatcaccggagaggaattgttcaacgtgtttagaatgatcggcgatgaacggtgcacgttggaggaatgtaagcgtatgataacaagtgtagataaaaatggagatgggttcgtctgcttcgaggatttctgtcttatgatggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43913" stop="45142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44213" g_stop="44842" g_length="630"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="636" r_length="636" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E406400" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44213" e_stop="44842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAA-G--GCGGTAGCGTCGGAGGA---ATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAA</genome_strand>
        <mrna_strand>AAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCCGCTCCCTTTCCAGATCCGATGATCCGTCTTACTCCTCTTCATCTTCCTCTTCCAACAAAGGCGGCGGCTGCGGAGGAGGAGGAATTTCTACTCCTACGAGCGTATTACCGACTTTATCCAACGAGATCTCAGCTGACGACTGGTCCGAGATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCAAGCGTTTTCCATCATCGATAACGGAGACGGTAAGATAAGGAAGGAGCAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGACTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATAAGAACGGAGATGGATGTATTAGTTTAGAGAATTTCGAAACTATCACCTCGGCGTTTGAACCGACGCCGCCGTCGGCGGCGGAAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGACGAGGACCACGACGGGAAAATCACCGGAGAGGAATTGTTCAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTGGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGGTTCGTCTGCTTCGAGGATTTCTGTCTTATGATGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459365" ref_strand="+" ref_description="SGN-E459365 [cPRO-27-L15]">
      <seq>gttccccaaaaacttcttcaagtccaaaaaatcccgctccctttccagatccgatgatccgtcttactcctcttcatcctcctcttccaacaaaggcggcggctgcggaggaggaggaatttctactcctacgagcgtattaccgactttatccaacgagatctcagctgacgactggtccgagatctctaccgccggagtttactccgatctcgttcaagcgttttccgtcatcgataacggagacggtaagataaggaaggagcaactcgaagcgattttaagcagagttggaggtaaatctccaccgactgaagaggaacttgtgttgttgcttgatgaattggataagaacggagatggatgtattagtttagagaatttcgaaactatcacctcggcgtttgaaccgacgccgccgtcggcggcggaagatgcaggtgagatgagagatgcgtttgatttcttcgacgaggaccacgacgggaaaatcaccggagaggaattgttcaacgtgtttagaatgatcggcgatgaacggtgcacgttggaggaatgtaagcgtatgataacaagtgtagataaaaatggagatgggttcgtctgcttcgaggatttctgtcttatgatggaacagcagagataaaaaaaaaaatagaaatcgttttaatttattttattttatttcttatggtagttgggaaattgggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="43915" stop="45208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44215" g_stop="44895" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="685" r_length="685" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E459365" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459365" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44215" e_stop="44895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAA-G--GCGGTAGCGTCGGAGGA---ATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTT</genome_strand>
        <mrna_strand>GTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCCGCTCCCTTTCCAGATCCGATGATCCGTCTTACTCCTCTTCATCCTCCTCTTCCAACAAAGGCGGCGGCTGCGGAGGAGGAGGAATTTCTACTCCTACGAGCGTATTACCGACTTTATCCAACGAGATCTCAGCTGACGACTGGTCCGAGATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCAAGCGTTTTCCGTCATCGATAACGGAGACGGTAAGATAAGGAAGGAGCAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGACTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATAAGAACGGAGATGGATGTATTAGTTTAGAGAATTTCGAAACTATCACCTCGGCGTTTGAACCGACGCCGCCGTCGGCGGCGGAAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGACGAGGACCACGACGGGAAAATCACCGGAGAGGAATTGTTCAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTGGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGGTTCGTCTGCTTCGAGGATTTCTGTCTTATGATGGAACAGCAGAGAT-AAA-AAAAAAAATAGAAATCGTTTTAATTTATTTTATTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E578013" ref_strand="+" ref_description="SGN-E578013 [LE08CG09]">
      <seq>tttttttcaaacttaaaagggaggaagttgttctcattttatatatatttcttccaaatatagatcaatcctagccattagattgacctaaatcaagggtcctaattaatctcacaaccctttttcccaactaacacaagaaataaaataaattaagacaatttctatttttttttcttttatctctgctgttccatcataagacagaaatcgtcgaagcagacgaatccatctccatttttatctacacttgttatcatacgcttacattcctctaacgtgcaccgttcatcgccgatcattctaaacacgttaaacaattcctcaccggtgattttcccgtcgtgatcctcatcgaagaaatcaaacgcatctctcatctcacctgcatctcccgctgccgacgtcggtgtcgactcaaacgccgaggtaatagtttcaaaattctctaaactaatacatccatctccgttctcatccaattcatcaagcaacaacacaagttcctcttcactcggtggagatttacctccaactctgcttaaaatcgcttcgagtttctccttcttaatcttaccgtctccgttatcgataacggaaaacgctcgaacgagatcggagtaaactccggcggtagagatgtcggaccactcatcagctgagatctcgttggataaagtaggtaacacgctcgtaggagtagaaattcctccgacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="45333" stop="44016"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45032" g_stop="44316" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="718" r_length="718" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E578013" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E578013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45032" e_stop="44316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGTTCAAACTTAAAAGGGAGGAAGTTGTTCTCATTTTATATATATTTCTTCCAAATATAGATCAATCCTAGCCATTAGATTGACCTAAATCAAGGGTCCTAATTAATCTCACAACCCTTTTTCCCAACTAACACAAGAAATAAAATAAATTAAGACAATTTCTA-TTTTTTTTCTTTTATCTCTGCTGTTCCATCATAAGACAGAAATCGTCGAAGCAGACGAATCCATCTCCATTTTTATCTACACTTGTTATCATACGCTTACATTCCTCTAACGTGCACCGTTCATCGCCGATCATTCTAAACACGTTAAACAATTCCTCACCGGTGATTTTCCCGTCGTGATCCTCATCGAAGAAATCAAACGCATCTCTCATCTCACCTGCATCTCCCGCTGCCGACGTCGGTGTCGACTCAAACGCCGAGGTAATAGTTTCAAAATTCTCTAAACTAATACATCCATCTCCGTTCTCATCCAATTCATCAAGCAACAACACAAGTTCCTCTTCACTCGGTGGAGATTTACCTCCAACTCTGCTTAAAATCGCTTCGAGTTTCTCCTTCTTAATCTTACCGTCTCCGTTATCGATAACGGAAAACGCTCGAACGAGATCGGAGTAAACTCCGGCGGTAGAGATGTCGGACCACTCATCAGCTGAGATCTCGTTGGATAAAGTAGGTAACACGCTCGTAGGAGTAGAAATTCCTCCGACGC</genome_strand>
        <mrna_strand>TTTTTTTCAAACTTAAAAGGGAGGAAGTTGTTCTCATTTTATATATATTTCTTCCAAATATAGATCAATCCTAGCCATTAGATTGACCTAAATCAAGGGTCCTAATTAATCTCACAACCCTTTTTCCCAACTAACACAAGAAATAAAATAAATTAAGACAATTTCTATTTTTTTTTCTTTTATCTCTGCTGTTCCATCATAAGACAGAAATCGTCGAAGCAGACGAATCCATCTCCATTTTTATCTACACTTGTTATCATACGCTTACATTCCTCTAACGTGCACCGTTCATCGCCGATCATTCTAAACACGTTAAACAATTCCTCACCGGTGATTTTCCCGTCGTGATCCTCATCGAAGAAATCAAACGCATCTCTCATCTCACCTGCATCTCCCGCTGCCGACGTCGGTGTCGACTCAAACGCCGAGGTAATAGTTTCAAAATTCTCTAAACTAATACATCCATCTCCGTTCTCATCCAATTCATCAAGCAACAACACAAGTTCCTCTTCACTCGGTGGAGATTTACCTCCAACTCTGCTTAAAATCGCTTCGAGTTTCTCCTTCTTAATCTTACCGTCTCCGTTATCGATAACGGAAAACGCTCGAACGAGATCGGAGTAAACTCCGGCGGTAGAGATGTCGGACCACTCATCAGCTGAGATCTCGTTGGATAAAGTAGGTAACACGCTCGTAGGAGTAGAAATTCCTCCGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E465718" ref_strand="+" ref_description="SGN-E465718 [cPRO-22-E3]">
      <seq>cgactttatccaacgagatctcagctgacgactggtccgagatctctaccgccggagtttactccgatctcgttcaagcgttttccatcatcgataacggagacggtaagataaggaaggagcaactcgaagcgattttaagcagagttggaggtaaatctccaccgactgaagaggaacttgtgttgttgcttgatgaattggataagaacggagatggatgtattagtttagagaatttcgaaactatcacctcggcgtttgaaccgacgccgccgtcggcggcggaagatgcaggtgagatgagagatgcgtttgatttcttcgacgaggaccacgacgggaaaatcaccggagaggaattgttcaacgtgtttagaatgatcggcgatgaacggtgcacgttggaggaatgtaagcgtatgataacaagtgtagataaaaatggagatgggttcgtctgcttcgaggatttctgtcttatgatggaacagcagagataaaaaaaatagaaatcgttttaatttattttattttatttcttatgttacttgggaaaatgggttgtgagattaattaggacccttgattaggtcaatctaacggctaggatggntctatatttggnaagaattatatataaaatgagaacaattccttnccgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44052" stop="45320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44352" g_stop="45027" g_length="676"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="675" r_length="675" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E465718" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E465718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44352" e_stop="45027"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAA-AAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGG-AAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAA</genome_strand>
        <mrna_strand>CGACTTTATCCAACGAGATCTCAGCTGACGACTGGTCCGAGATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCAAGCGTTTTCCATCATCGATAACGGAGACGGTAAGATAAGGAAGGAGCAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGACTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATAAGAACGGAGATGGATGTATTAGTTTAGAGAATTTCGAAACTATCACCTCGGCGTTTGAACCGACGCCGCCGTCGGCGGCGGAAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGACGAGGACCACGACGGGAAAATCACCGGAGAGGAATTGTTCAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTGGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGGTTCGTCTGCTTCGAGGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAAAAATAGAAATCG-TTTTAATTTATTTTATTTTATTTCTTATGTTACTTGGGAAAATGGGTTGTGAGATTAATTAGGACCCTTGA-TTAGGTCAATCTAACGGCTAGGATGGNTCTATATTTGGNAAGAATTATATATAAAATGAGAACAA-TTCCTTNCCGTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E713073" ref_strand="+" ref_description="SGN-E713073 [FB06CF03]">
      <seq>ctttatccaacgagatctcagctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaattgtcttaatttattttatttcttgtgttagttgggaaaaagggttgtgagattaattaggacccttgatttaggtcaatctaatggctaggattgatctatatttggaagaaatatatataaaatgagaacaacttcctcccttttaaaaaaaaacaattcgccctatagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44055" stop="45320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44355" g_stop="45020" g_length="666"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E713073" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>666</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44355" e_stop="45020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAA</genome_strand>
        <mrna_strand>CTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377004" ref_strand="+" ref_description="SGN-E377004 [TUS-20-G1]">
      <seq>agctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaattgtcttaatttatttttatttcttgtgttagttgggaaaaagggttgtgagattaattatgacccttgatttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44074" stop="45245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44374" g_stop="44945" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E377004" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44374" e_stop="44945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTA-TTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAG</genome_strand>
        <mrna_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTATGACCCTTGATTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E230963" ref_strand="+" ref_description="SGN-E230963 [cLED-5-G23]">
      <seq>agctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcngagataaaagaaaaaaaatagaaattggcttaatttattttatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44074" stop="45195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44374" g_stop="44895" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="522" r_length="522" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E230963" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E230963" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44374" e_stop="44895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTT</genome_strand>
        <mrna_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCNGAGATAAAAGAAAAAAAATAGAAATTGGCTTAATTTATTTTATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E233021" ref_strand="+" ref_description="SGN-E233021 [cLED-6-L10]">
      <seq>agctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44074" stop="45172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44374" g_stop="44872" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E233021" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44374" e_stop="44872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAAT</genome_strand>
        <mrna_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241024" ref_strand="+" ref_description="SGN-E241024 [cLED-24-L4]">
      <seq>agctgatgagtggtccgacatctctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44074" stop="45103"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44374" g_stop="44803" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="430" r_length="430" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E241024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44374" e_stop="44803"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGAT</genome_strand>
        <mrna_strand>AGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E339159" ref_strand="-" ref_description="SGN-E339159 [cTOF-6-H19]">
      <seq>ctaccgccggagtttactccgatctcgttcgagcgttttccgttatcgataacggagacggtaagattaagaaggagaaactcgaagcgattttaagcagagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaattgtcttaatttattttatttcttgtgttagttgggaaaaagggttgtgagattaattaggacccttgatttaggtcaatctaatggctaggattgatctatatttggaagaaatatatataaaatgagaacaacttcctcccttttaagtttgaaccataatatataacatatatatagttactcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44097" stop="45358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44397" g_stop="45057" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="662" polyA_stop="677"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E339159" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339159" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44397" e_stop="45057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAACCATAATATATAACATATATATAGTTACTC</genome_strand>
        <mrna_strand>CTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAACCATAATATATAACATATATATAGTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377003" ref_strand="+" ref_description="SGN-E377003 [TUS-20-G1](-)">
      <seq>gttttcccgttatcgaaaacggagacggtaagattaaaaaggaagaaactcgaagcgattttaagcaaaagttggaggtaaatctccaccgagtgaagaggaacttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggaaatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaattgtcttaatttattttatttcttgtgttagttgggaaaaagggttgtgagattaattaggacccttgatttaggtcaatctaatggctaggattgatctatatttggaagaaatatatataaaatgagaacaacttcctcccttaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44131" stop="45320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44431" g_stop="45020" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="594" polyA_stop="613"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E377003" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44431" e_stop="45020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTT-CCGTTATCGATAACGGAGACGGTAAGATTAAGAAGG-AGAAACTCGAAGCGATTTTAAGC-AGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAA</genome_strand>
        <mrna_strand>GTTTTCCCGTTATCGAAAACGGAGACGGTAAGATTAAAAAGGAAGAAACTCGAAGCGATTTTAAGCAAAAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAAATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E394748" ref_strand="-" ref_description="SGN-E394748 [TUS-42-D17]">
      <seq>ttaagcagagttggaggtaaatctccaccgagtgaagaggaactttgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaattgtcttaatttattttatttcttgtgttagttgggaaaaagggttgtgagattaattaggacccttgatttaggtcaatttaatggctaggattgatctatatttggaagaaatatatataaaatgagaacaacttcctcccttttaagtttgaaccataatatataacatatatatagttactcaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44189" stop="45358"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44489" g_stop="45057" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="571" polyA_stop="591"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E394748" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E394748" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44489" e_stop="45057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAAC-TTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAACCATAATATATAACATATATATAGTTACTC</genome_strand>
        <mrna_strand>TTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATTTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAACCATAATATATAACATATATATAGTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248382" ref_strand="-" ref_description="SGN-E248382 [cLEG-1-M7]">
      <seq>tgtgttgttgcttgatgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtttaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggattcgtctgcttcgacgatttctgtcttatgatggaacagcagagataaaagaaaaaaaatagaaattgtcttaatttattttatttcttgtgttagttgggaaaaagggttgtgagattaattaggacccttgatttaggtcaatctaatggctaggattgatctatatttgaaagtgatatatatagaatgagttcaacttcctcccttttaagtttgacccataatatataacatatatatagttactcgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44233" stop="45357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44533" g_stop="45057" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="536"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E248382" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248382" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="44533" e_stop="45057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAACCATAATATATAACATATATATAGTTACTC</genome_strand>
        <mrna_strand>TGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGAAAGTGATATATATAGAATGAGTTCAACTTCCTCCCTTTTAAGTTTGACCCATAATATATAACATATATATAGTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E232759" ref_strand="+" ref_description="SGN-E232759 [cLED-8-G20]">
      <seq>tgaattggatgagaacggagatggatgtattagtttagagaattttgaaactattacctcggcgtttgagtcgacaccgacgtcggcagcgggagatgcaggtgagatgagagatgcgtttgatttcttcgatgaggatcacgacgggaaaatcaccggtgaggaattgtgtaacgtgtttagaatgatcggcgatgaacggtgcacgttagaggaatgtaagcgtatgataacaagtgtagataaaaatggagatggatttgtctgcttcgacgatctctgtcttatgatggaacagctgagataaaagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="44248" stop="45161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44548" g_stop="44861" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E232759" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>314</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E232759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44548" e_stop="44861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAA</genome_strand>
        <mrna_strand>TGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTGTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTTGTCTGCTTCGACGATCTCTGTCTTATGATGGAACAGCTGAGATAAAAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375536" ref_strand="+" ref_description="SGN-E375536 [TUS-34-D22](-)">
      <seq>ttttatggagtatgagtgtggctttccagtaaaagaattccattctcacaatatcaaatctgggagcggttaataaaaaaccaggtgagggctacacaaaggcagaacagatggatggttgatggttgtccaggaagtatacaagatcacattttataaatttccaacattgcacagtttgtcttgactacaattggtaggagcgtgctactaacattgttccttactcaaaccttgaggtcaaggacgggagtattgttatgaacccgcctgccgatacttgtcacacaactagtttttgggccgaggaggagcaacaaaactggaaggcctttgcaaaggcgaatttgggacccatgcccatttaacaactagctatggggagaagcaacaaaactggaaggcctttgcaaaggcgaatttgggacccatgcccatttaagaactatctaaaaggatgacggatgagaaggagcgctttatgcaaattgttgacaaaatatctagtcctttcatccctttctttgagttctatttttaatccatttcttcttagtgtgttattaaattgctttgtaatttcaattatgagttcataaatagatttatcgattgtttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="49476" stop="48256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49176" g_stop="48550" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="627" r_length="627" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E375536" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49176" e_stop="48550"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGGAGTATGAGTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATCTGGGAGCGGTTAATAAAAAACCAGGTGAGGGCTACACAAAGGCAGAACAGATGGATGGTTGATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACATTGCACAGTTTGTCTTGACTACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATCTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTCTAATCCATTTCTTCTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTGAATTTCAA</genome_strand>
        <mrna_strand>TTTTATGGAGTATGAGTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATCTGGGAGCGGTTAATAAAAAACCAGGTGAGGGCTACACAAAGGCAGAACAGATGGATGGTTGATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACATTGCACAGTTTGTCTTGACTACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATCTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTTTAATCCATTTCTTCTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375762" ref_strand="+" ref_description="SGN-E375762 [TUS-15-A6](-)">
      <seq>gtgtggctttccagtaaaagaattccattctcacaatatcaaatttgggagcggttaataaaaaaccaggtaagggttacacaaaggcagaacagatggatggttaatggttgtccaggaagtatacaagatcacattttataaatttccaacaatgcacagtttgtcttgaatacaattggtaggagcgtgctactaacattgttccttactcaaaccttgaggtcaaggacgggagtattgttatgaacccgcctgccgatacttgtcacacaactagtttttgggccgaggaggagcaacaaaactggaaggcctttgcaaaggcgaatttgggacccatgcccctttaacaactagctatggggagaagcaacaaaactggaaggcctttgcaaaggcgaatttgggacccatgcccatttaagaactatttaaaaggatgacggatgagaaggagcgctttatgcaaattgttgacaaaatatctagtcctttcatccctttctttgagttctatttttaatccatttctttttagtgtgttattaaattgctttgtaatttcaattatgagttcataaatagatttatcgattgtttgaatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="49461" stop="48250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49161" g_stop="48551" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="612" polyA_stop="627"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E375762" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49161" e_stop="48551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATCTGGGAGCGGTTAATAAAAAACCAGGTGAGGGCTACACAAAGGCAGAACAGATGGATGGTTGATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACATTGCACAGTTTGTCTTGACTACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATCTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTCTAATCCATTTCTTCTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTGAATTTCA</genome_strand>
        <mrna_strand>GTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATTTGGGAGCGGTTAATAAAAAACCAGGTAAGGGTTACACAAAGGCAGAACAGATGGATGGTTAATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACAATGCACAGTTTGTCTTGAATACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCCTTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATTTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTTTAATCCATTTCTTTTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTGAATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375537" ref_strand="+" ref_description="SGN-E375537 [TUS-34-D22]">
      <seq>ttggatcataataagttaattatgtcaaaaacttggatcataataagttaattatgtcaactttgtggtattcttgcatttgggttggtaaaggacaagagcaatttcttcctggtatcttgttgcctaagtcgagagagtttggtagcacggtgaaattactggggttgcttggggcatttgttgcacgatattcagagcagtctccctatattcttgtcaaaaaagatgatgtgctcttgttcactgtatttggtatagttcatatatcgaagataactttgcttatctaggctttggtcctggtccttattttgcttatgatatatttgctgagttacttggtaagacagtggatgtatttcaccagcagttctatcttgatgaagaacttgcaccgcaaaaaactgaccaacagattgcctcactttatcacctaactactacaatgaatcaacattgttacattgatagcatctttgtcgagagtaatttcttgcaagcaaggttcatatttcagcttgtttggatcctactgttgacggagcacaagcttaggccaagcataactactgattcaagtttgggctcaattatgtgttatatagtgcaacttattcatggactgagctacaaagatctattgagaattatcttgattacatttttatggagtatgagtgtggctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50141" stop="48853"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49841" g_stop="49153" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="689" r_length="689" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E375537" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375537" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49841" e_stop="49153"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGACGGAGCACAAGCTTAGGCCAAGCATAACTACTGATTCAAGTTTGGGCTCAATTATGTGTTATATAGTGCAACTTATTCATGGACTGAGCTACAAAGATCTATTGAGAATTATCTTGATTACATTTTTATGGAGTATGAGTGTGGCTT</genome_strand>
        <mrna_strand>TTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGACGGAGCACAAGCTTAGGCCAAGCATAACTACTGATTCAAGTTTGGGCTCAATTATGTGTTATATAGTGCAACTTATTCATGGACTGAGCTACAAAGATCTATTGAGAATTATCTTGATTACATTTTTATGGAGTATGAGTGTGGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253318" ref_strand="+" ref_description="SGN-E253318 [cLEG-26-J5]">
      <seq>cttggatcataataagttaattatgtcaaaaaccttggatcataataagttaattatgtcaactttgtggtattcttgccatttgggttggtaaaggaccaagagccaatttcttcctggtatcttgttgcctaagtcgagagagtttggtagcacggtgaaattacctggggttgcttggggcatttgttgcacgatattcagagcagtctccctatattcttgtcaaaaaagatgatgtgctcttgttcactgtatttggtatagttcatatatcgaagataactttgcttatctaggctttggtcctggtccttattctgcttatgatatatttgctgagttacttggtaagacagtggatgtatttcaccagcagttctatcttgatgaacaacttgcaccgcaaaaaactgaccaacagattgcctcactttatcacctaactactacaatgaatcaacattgttacattgatagcatctttgtcgagagtcatttcttgcaagcaaggttcatatttcagcttgtttggatcctactgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50142" stop="49000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49842" g_stop="49300" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="548" r_length="548" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E253318" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253318" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49842" e_stop="49300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGGATCATAATAAGTTAATTATGTCAAAAA-CTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTG-CATTTGGGTTGGTAAAGGA-CAAGAG-CAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTA-CTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGA</genome_strand>
        <mrna_strand>CTTGGATCATAATAAGTTAATTATGTCAAAAACCTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCCATTTGGGTTGGTAAAGGACCAAGAGCCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACCTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTCTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAACAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTCATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253220" ref_strand="+" ref_description="SGN-E253220 [cLEG-26-F6]">
      <seq>ttggatcataataagttaattatgtcaaaaacttggatcataataagttaattatgtcaactttgtggtattcttgcatttgggttggtaaaggacaagagcaatttcttcctggtatcttgttgcctaagtcgagagagtttggtagcacggtgaaattactggggttgcttggggcatttgttgcacgatattcagagcagtctccctatattcttgtcaaaaaagatgatgtgctcttgttcactgtatttggtatagttcatatatcgaagataactttgcttatctaggctttggtcctggtccttattttgcttatgatatatttgctgagttacttggtaagacagtggatgtatttcaccagcagttctatcttgatgaagaacttgcaccgcaaaaaactgaccaacagattgcctcactttatcacctaactactacaatgaatcaacattgttacattgatagcatctttgtcgagagtaatttcttgcaagcaaggttcatatttcagcttgtttggatcctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50141" stop="49005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49841" g_stop="49305" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E253220" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49841" e_stop="49305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACT</genome_strand>
        <mrna_strand>TTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375763" ref_strand="+" ref_description="SGN-E375763 [TUS-15-A6]">
      <seq>gtctatcaaaattctcttattcaaaatatttcttcacctttctagtttcctctttttagttgaatcttccgatcttatttaacgatcttgagctaggagaagatttactgattatacttttcttctgctattctctacagtttgatggatattctttaggatgtaaggatgttattctagaatcacacaaggtgcttatgattaccacagatactattgaggaaaatgactatgctattgatgttgataatgaagacaggactgaggaagaagaagaagaaaagcttttaatcattgaaaataaaataggacaatcggcttcggcatttgtgggaatacttccattatggattgattctacattttctagtttcggtgactttgccatgttttgtatgctacataaatttgggatagctcgatgtttggaggagttctctgaaatgctttcaacttgtagatatgaccatcttactaacagaggtataaatgatcactttagtagacttggtcgtgcttcacttatcttaactttccaattgtttccacctgatcaattcggattagcgtttccatttgatcctggctctcgctcacttacgatgttccttagagttatgagaaactatgtattttgtgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50794" stop="49553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50494" g_stop="49853" g_length="642"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="642" r_length="642" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E375763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50494" e_stop="49853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTCCTTAGAGTTATGAGAAACTATGTATTTTGTGTCG</genome_strand>
        <mrna_strand>GTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTCCTTAGAGTTATGAGAAACTATGTATTTTGTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212336" ref_strand="+" ref_description="SGN-E212336 [cLEC-74-M19]">
      <seq>aaattctcttattcaaaatatttcttcacctttctagtttcctctttttagttgaatcttccgatcttatttaacgatcttgagctaggagaagatttactgattatacttttcttctgctattctctacagtttgatggatattctttaggatgtaaggatgttattctagaatcacacaaggtgcttatgattaccacagatactattgaggaaaatgactatgctattgatgttgataatgaagacaggactgaggaagaagaagaagaaaagcttttaatcattgaaaataaaataggacaatcggcttcggcatttgtgggaatacttccattatggattgattctacattttctagtttcggtgactttgccatgttttgtatgctacataaatttgggatagctcgatgtttggaggagttctctgaaatgctttcaacttgtagatatgaccatcttactaacagaggtataaatgatcactttagtagacttggacgtgcttcacttatcttaactttccaattgtttccacctgatcaattcggattagcgtttccatttgatcctggctctcgctcacttacgatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50786" stop="49587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50486" g_stop="49887" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E212336" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50486" e_stop="49887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTC</genome_strand>
        <mrna_strand>AAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGACGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206878" ref_strand="+" ref_description="SGN-E206878 [cLEC-33-D8]">
      <seq>aaaattctcttattcaaaatatttcttcacctttctagtttcctctttttagttgaatcttccgatcttatttaacgatcttgagctaggagaagatttactgattatacttttcttctgctattctctacagtttgatggatattctttaggatgtaaggatgttattctagaatcacacaaggtgcttatgattaccacagatactattgaggaaaatgactatgctattgatgttgataatgaagacaggactgaggaagaagaagaagaaaagcttttaatcattgaaaataaaataggacaatcggcttcggcatttgtgggaatacttccattatggattgattctacattttctagtttcggtgactttgccatgttttgtatgctacataaatttgggatagctcgatgtttggaggagttctctgaaatgctttcaacttgtagatatgaccatcttactaacagaggtataaatgatcactttagtagacttggtcgtgcttcacttatcttaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50787" stop="49663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50487" g_stop="49963" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E206878" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50487" e_stop="49963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAAC</genome_strand>
        <mrna_strand>AAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201734" ref_strand="+" ref_description="SGN-E201734 [cLEC-11-A24]">
      <seq>gtctatcaaaattctcttattcaaaatatttcttcacctttctagtttcctctttttagttgaatcttccgatcttatttaacgatcttgagctaggagaagatttactgattatacttttcttctgctattctctacagtttgatggatattctttaggatgtaaggatgttattctagaatcacacaaggtgcttatgattaccacagatactattgaggaaaatgactatgctattgatgttgataatgaagacaggactgaggaagaagaagaagaaaagcttttaatcattgaaaataaaataggacaatcggcttcggcatttgtgggaatacttccattatggattgattctacattttctagtttcggtgactttgccatgttttgtatgctacataaatttgggatagctcgatgtttggaggagttctctgaaatgctttcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="50794" stop="49741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50494" g_stop="50041" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E201734" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50494" e_stop="50041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAAC</genome_strand>
        <mrna_strand>GTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355435" ref_strand="+" ref_description="SGN-E355435 [cTOS-25-K20]">
      <seq>gcgcaccaggtgtccaatgaaaagtcaaataagacttctgatattgttgtagatgttgagaatgtaatagtgctaatcaaaagtggcagtgctgaaatgttggttactcaagcaaaagagaagatttttcattcgatttcggatgaaaccaaagaggaggtggagttccatgtttcacaacacattagtgaaccacttatatacaacaacaatgaggcacacaagatgtttgtgtgaaaaatgaagataatttttaattttttggaggtacaaaaaatattttagatatatagtagaactttctagaatttggtagaataaatatctttaatatttatagttaagaaaaatctattgctctacataattagatatttatagtaaagtatagaataatttagattcttgttaaataattagaagataaggttatctaaatttttcttgtagatctttctagaataatttttagaagtatctctatactagtataaataggggtggtcatagtcatttgtaatcaacccaaaccaaatagtctatcaaaattctcttattcaaaatatttcttcacctttctagtttcctctttttagttgaatcttccgatcttatttaacgatcttgagctangagagatttactgattatacttttcttctgctattctctacagtttgatggatattctttangatgtaaggatgttattctagaatcacacaaggtgcttatgattaccacagatactattngaggaaatgactatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="51331" stop="49959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51031" g_stop="50259" g_length="773"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E355435" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51031" e_stop="50259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGCACCAGGTGTCCAATGAAAAGTCAAATAAGACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGTGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTAGATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGTATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCT</genome_strand>
        <mrna_strand>GCGCACCAGGTGTCCAATGAAAAGTCAAATAAGACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGTGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTAGATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGTATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTANGAG-AGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTANGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTNGAGGAAATGACTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E303439" ref_strand="+" ref_description="SGN-E303439 [cLEX-2-A3]">
      <seq>aacactatccctaacttgccctcgcctcagtcgtggaatgcgcaccaggtgtccaatgaaaagtcaaataacacttctgatattgttgtagatgttgagaatgtaatagtgctaatcaaaagtggcagtgctgaaatgttggttactcaagcaaaagagaagatttttcattcgatttcggatgaaaccaaagaggaggtggagttccatgtttcacaacacattagggaaccacttatatacaacaacaatgaggcacacaagatgtttgtgtgaaaaatgaagataatttttaattttttggaggtacaaaaaatattttagatatatagtagaactttctagaatttggtagaataaatatctttaatatttatagttaagaaaaatctattgctctacataattagatatttatagtaaagtatagaataatttatattcttgttaaataattagaagataaggttatctaaatttttcttgtagatctttctagaataatttttagaagtatctctatactaggataaataggggtggtcatagtcatttgtaatcaacccaaaccaaatagtctatcaaaattctcttgttcaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="51370" stop="50167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51070" g_stop="50467" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="604" r_length="604" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E303439" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51070" e_stop="50467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTATCCCTAACTTGCCCTCGCCTCAGTCGTGGAATGCGCACCAGGTGTCCAATGAAAAGTCAAATAAGACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGTGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTAGATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGTATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTATTCAAAATA</genome_strand>
        <mrna_strand>AACACTATCCCTAACTTGCCCTCGCCTCAGTCGTGGAATGCGCACCAGGTGTCCAATGAAAAGTCAAATAACACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGGGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTATATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGGATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTGTTCAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="61060" stop="127374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61359" g_stop="61917" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.919"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61918" i_stop="62266" i_length="349">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62267" g_stop="62426" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="717" r_length="159" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61359" e_stop="61917"/>
          <exon e_start="62267" e_stop="62426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATCAAGCATGATGAAGTGATTGAATCTCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTATGGGATCGGGTGTGACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGGACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGGGTGTCACGAACCGATACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAAATTTAGGGGATCGGGTGTCATGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGAGAACGGGTGTCACAGACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACGTAGATTTAGGGGATCGGGTGTCACGAACTGACACATAGATTTAGGGGATCGGGGTTCACGAACCGACACATAGATTTAGGGGATCGGGTGTCACGAACCGACACTTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTTATATACTCAATCTAATGAACATGA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATAT-AAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG.............................................................................................................................................................................................................................................................................................................................................................AGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATG-TTATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="61060" stop="69546"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61359" g_stop="61760" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61359" e_stop="61760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATCAAGCATGATGAAGTGATTGAATCTCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATAT-AAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAG-ATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="61971" stop="62808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62271" g_stop="62508" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62271" e_stop="62508"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTTATATACTCAATCTAATGAACATGATTACCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392027" ref_strand="+" ref_description="SGN-E392027 [TUS-24-O2](-)">
      <seq>cagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcttatgtatttttagcttttagactactcttagtttagtcatttgatcgtagatgttcttgtggtgatgacttccagattttggggaataatagatgttgaattttagaagttaatgaattggtctgtatttaatgagtttaagtcttccacattactttctgttgatattatattgaaatgttaaggttagattggttggttcgctcacataggagggtaagtgtgggtgccagtcgcaacccggttttggtcgtgacaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacgagtctagtagagtcttaaggaacggtagggggatgcctttacttttccttgagaggctataagacttttggaaaattccattctttcttctttcgtgctattacttgggtccaattggtatctaggtgatacaaattggtatctgaccatcttcactctatttcgcagatggttagaactagagcaacgactacgccagcatcaacaccagcaccggcgggacagggtgcgactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="62357" stop="121211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62657" g_stop="63372" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="710" r_length="710" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E392027" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62657" e_stop="63372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGTCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAG-TTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTTATTTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGATATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTATGGAACGGTAGGGGGACGCCTTTACTTTTATTTGAGAGGCTATAAGACTTTAGGAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCGGGACAGGGTGCGTCTGAGCAAGCTACTGGGGCTGTTG</genome_strand>
        <mrna_strand>CAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGACTACTCTTAGTTTAGTCATTTGATCGTAGATGTTCTTGTGGTGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTC-TGTATTTAATGAGTTTAAGTCTTCCACATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTTGGTCGTGACAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGATGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTTGGAAAA-TTC---CATTCTTTC-TTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAGCATCAACACCAGCACCGGCGGGACAGGGTGCGACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="64111" stop="63079"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63811" g_stop="63379" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63811" e_stop="63379"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="122642" stop="63971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64803" g_stop="64270" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64803" e_stop="64270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGATAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGTGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCAACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTTTCCCCACATCCATAACACTATCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGACCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTCCACTCCTTCA</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="65189" stop="64031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64889" g_stop="64331" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64889" e_stop="64331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGATAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGTGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCAACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTTTCCCCACATCCATAACACTATCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGACCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="65396" stop="64470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65096" g_stop="64766" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65096" e_stop="64766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAGTCCAAAATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATCTCCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAG</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="65868" stop="64610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65568" g_stop="64910" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65568" e_stop="64910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATTGAAATGGGGCGAGTACCCGATTCAAGGTCAATACAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAGGGAGATGATACGCACCGGATTGGAAGTGTAGTCGCCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAGTCCAAAATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATCTCCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="67869" stop="67092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67569" g_stop="67393" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67569" e_stop="67393"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTACTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGACACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="70348" stop="69412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70048" g_stop="69712" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70048" e_stop="69712"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTTGATACCATACTCATTTGGTAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTTCGCTCCCTCATATTCATTAATCCTCTTGTGTTGGTACGTGACACTCCGATCCCCTAAATCTACGTGTC-GGTTCGTGACACCCTATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="69422" stop="70259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69722" g_stop="69959" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69722" e_stop="69959"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGAATA-TGAGGGAGCGAAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTACCAAATGAGTATGGTATCAAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="69423" stop="70502"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69723" g_stop="70202" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69723" e_stop="70202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGAATA-TGAGGGAGCGAAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTACCAAATGAGTATGGTATCAAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTAAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCTAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTA-TGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239290" ref_strand="+" ref_description="SGN-E239290 [cLEL-9-N1](-)">
      <seq>tctccttctttttcgtatttcggaggttcttaaaggttcaagttgccttatcaaagttcaagttgccttatcaaaccttccacttttaaaactgacggatagatctcaagaccaagattcgaagcagagctggagtcagaatttggaccaaagagctcaatttttttttctttctttttttcttttggcattgtatttgggcataagcccttgttgtctttatctttccctttattatttattgtattacctgactagaatttaggacacgtaccataatcaaaataggtcaacaaaacccaaaacaaatgggtccaaaaattcggtcaaggcggaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="77571" stop="76631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77271" g_stop="76941" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="336" polyA_stop="363"/>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E239290" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77271" e_stop="76941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCCTTCTTTTTCGTATTTCGGAGGTTCTTAAAGGTTCAAGTTGCCTTATCAAAGTTCAAGTTGCCTTATCAAACCTTCCACTTTTAAAACTGACGGATAGATCTCAAGACCAAGATTCGAAGCAGAGCTGGAGTCAGAATTTGGACCAAAGAGCTCAATTTTTTTTTCTTTCTTTTTTTCTTTTGGCATTGTATTTGGGCATAAGCCCTTGTTGTCTTTATCTTTCCCTTTATTATTTATTGTATTACTTGACTAGAATTTAGGACACGTACAATAATCAAAATAGGTCAACAAAACCCAAAACAAATGGGTCCAAAAATTCGGTCAAG</genome_strand>
        <mrna_strand>TCTCCTTCTTTTTCGTATTTCGGAGGTTCTTAAAGGTTCAAGTTGCCTTATCAAAGTTCAAGTTGCCTTATCAAACCTTCCACTTTTAAAACTGACGGATAGATCTCAAGACCAAGATTCGAAGCAGAGCTGGAGTCAGAATTTGGACCAAAGAGCTCAATTTTTTTTTCTTTCTTTTTTTCTTTTGGCATTGTATTTGGGCATAAGCCCTTGTTGTCTTTATCTTTCCCTTTATTATTTATTGTATTACCTGACTAGAATTTAGGACACGTACCATAATCAAAATAGGTCAACAAAACCCAAAACAAATGGGTCCAAAAATTCGGTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="113226" stop="112246"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112927" g_stop="112554" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112927" e_stop="112554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTCCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGAAGGACCGTCATAGCCACGACGGAACGTCATAAGCTTCGTAATCACACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCAATTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCTAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATATTGTGAAACCACG</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351864" ref_strand="+" ref_description="SGN-E351864 [cTOS-8-K24]">
      <seq>acttcgaaggtgtttctccctgtatcagacttcctagtactccaaactttgttattccgggagattttcactaatttttaagcgatctcagcataagggcattctccataagatccaccttctataatgtccaacacttctttgttactatcatcctgtccctgatagaactatttcttccgtgactcatcatctatacagtgatttggaacacttctcaagaatgaggtgatctatcccaagaactactaactgactctactggtagtgccacaaaattatttactctgtctttgtggtttagtttcttcgagattggatagtagagtgccaagaaaacatctcttaattggttccaagtgaagattgagttgcatggaagctcagtgaaccatataggagcctctcccttcagtgagagaggaaacactgtgagccctattacatctagatccatgtcaggcctccccacactacatttacacactgcccttaccttagctatttgggcatgtggatcctcaggcggtagccctgaaaacaaacctctagcagtgagcatttgcatcaggctactagttaccataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="115444" stop="114254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115144" g_stop="114555" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E351864" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351864" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115144" e_stop="114555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTAATCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAGTTTTTCAGCGATCTCAGCATAAGGGCATTCTCTATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTGTTATCACCCTGTCCCCGATAGAAGTATTCCTTCAGTGAATAATCATCTATATGGTGATTTTGAACACTTCTATAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACTGGATAGTAGCGTGCTAAGAAAACATCTCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCAGTCAGTGAGAGAGGAAACACTCTGAGACCTATTACATCTAGATCCAAATCACGCCTCCCCACACAACTTTTACAAACTGCCCTTACCTTAGCTATATAGGCATGTGGATCCTCAGAAGGTAGCCCTGAGAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</genome_strand>
        <mrna_strand>ACTTCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTACTCCAAACTTTGTTATTCCGGGAGATTTTCACTAATTTTTAAGCGATCTCAGCATAAGGGCATTCTCCATAAGATCCACCTTCTATAATGTCCAACACTTCTTTGTTACTATCATCCTGTCCCTGATAGAACTATTTCTTCCGTGACTCATCATCTATACAGTGATTTGGAACACTTCTCAAGAATGAGGTG-ATCTATCCCAAGAACTACTAACTGACTCTACTGGTAGTGCCACAAAATTATTTACTCTGTCTTTGTGGTTTAGTTTCTTCGAGATTGGATAGTAGAGTGCCAAGAAAACATCTCTTAATTGGTTCCAAGTGAAGATTGAGTTGCATGGAAGCTCAGTGAACCATATAGGAGCCTCTCCCTTCAGTGAGAGAGGAAACACTGTGAGCCCTATTACATCTAGATCCATGTCAGGCCTCCCCACACTACATTTACACACTGCCCTTACCTTAGCTATTTGGGCATGTGGATCCTCAGGCGGTAGCCCTGAAAACAAACCTCTAGCAGTGAGCATTTGCATCAGGCTACTAGTTACCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351546" ref_strand="+" ref_description="SGN-E351546 [cTOS-12-I18]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttggtatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttcgagtcaattggtatctaagcgatacgaattggtatctgaccatnctcactctcttgccagatgggtagaactagagcaacgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="119819" stop="121153"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120119" g_stop="120853" g_length="735"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E351546" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120119" e_stop="120853"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCCTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-ATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGCCTTTATTTTATGAGTTTAAGTCTTCCGCATTACTTTCTAGTTAAATTATATTGAAACGTTAAGGTTTAGATTTGTTGGTTCGCTCACATAGGAGGGAAAGTGTGGGTGCCAGTCGCAGCCCGGATTCGGGTCGTGAC-AAACTTGGTATCAGAGCCATAGGTTCGTTGGTCTAATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTT-GAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACT</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGGTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A-T----TTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTCGAGT-CAATTGGTATCTAAGCGATACGAATTGGTATCTGACCATNCTCACTCTCTTGC-CAGATGGGTAGAACTAGAGCAACGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356696" ref_strand="+" ref_description="SGN-E356696 [cTOS-21-K7]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacatangagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattaggttcgttggtctcatcacacaagaacaagtctagtagagtcttaaggaacggtagggggacgcttttacttttccttgagaggctataagactttaggaaaacttcactctttcattctttctttcgtgctactacttgagtccaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="119819" stop="121078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120119" g_stop="120778" g_length="660"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E356696" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120119" e_stop="120778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCCTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-ATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGCCTTTATTTTATGAGTTTAAGTCTTCCGCATTACTTTCTAGTTAAATTATATTGAAACGTTAAGGTTTAGATTTGTTGGTTCGCTCACATAGGAGGGAAAGTGTGGGTGCCAGTCGCAGCCCGGATTCGGGTCGTGAC-AAACTTGGTATCAGAGCCATAGGTTCGTTGGTCTAATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A-T----TTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATANGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCTTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAACTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356206" ref_strand="+" ref_description="SGN-E356206 [cTOS-20-F19]">
      <seq>ttggccgatgatatctactcagtagccgtgttttgtactgacccctacttttatgtttttcttcttgttatttgtggagtgcagcaaacgtgccgtcatcttcgactcaacagtaactcaagccagtcttcgtcacaccggatcttcagggtgagctaacgcttctagcttggactggatcttctccttcatgtcttgatgccttgaacttccggcatggactagcttcttatgtaattttttagcttcttagaaactcttagaattagtagtttaaagtagatgttcttgtgatgatgacttccaggttttgggaataatagatgtttaataatagtagttattgattttattaatgagtttaagtcttccgcattactttctgttgctattacattgaaatgttaaggtttagattggttggttcgctcacataggagggtaagtgtgggtgccagtggcggcccggatttgggtcgtgacaaaacttggtatcagagcattagggtcgttggtctcatcacacaagaacaagtctagtagagtcttaagggacggtanggggacgcttttacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="119819" stop="121003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120119" g_stop="120703" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E356206" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120119" e_stop="120703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCCTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGT-ATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGCCTTTATTTTATGAGTTTAAGTCTTCCGCATTACTTTCTAGTTAAATTATATTGAAACGTTAAGGTTTAGATTTGTTGGTTCGCTCACATAGGAGGGAAAGTGTGGGTGCCAGTCGCAGCCCGGATTCGGGTCGTGAC-AAACTTGGTATCAGAGCCATAGGTTCGTTGGTCTAATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTC</genome_strand>
        <mrna_strand>TTGGCCGATGATATCTACTCAGTAGCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCTTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTAATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTTAATAATAGTAGTTATTG-A-T----TTTA-TTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGCTATTACATTGAAATGTTAAGGTTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTGGCGGCCCGGATTTGGGTCGTGACAAAACTTGGTATCAGAGCATTAGGGTCGTTGGTCTCATCACACAAGAACAAGTCTAGTAGAGTCTTAAGGGACGGTANGGGGACGCTTTTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="120327" stop="121211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120626" g_stop="120911" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120626" e_stop="120911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGGTTCGTTGGTCTAATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACATCAACAGCGGCCAGACAAGAAACCACTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="120684" stop="121837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120984" g_stop="121537" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120984" e_stop="121537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGCCCATGTGATACTAGGGTAGTGACTCCTCCACCGACTAAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTTCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCGTGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCACGAGCTACTACACAAAATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="122007" stop="120688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121707" g_stop="120988" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121707" e_stop="120988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAACATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCACGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGAAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTATTACCTCCTTAGTCGGTGGAGGAGTCACTACCCTAGTATCACATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="122004" stop="120741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121704" g_stop="121041" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121704" e_stop="121041"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAACATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCACGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGAAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCA-ATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="122644" stop="121255"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122344" g_stop="121555" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122344" e_stop="121555"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTTACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGAGACAGTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGATTCAAGCATAAGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGGGAAGACTGAATTGGTCGGACTGAGTAACTTCCCAAACCTTGTCCTCTAGTGTAAGAACCATTAAACTAACCCCCCTTTCGAAATCTCTTTGATGTCGATGCTGTGGTGAAGTAGTCTAGCTTCACTCCTTCCACATCTACCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCGCAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAACATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="122568" stop="121271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122268" g_stop="121571" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122268" e_stop="121571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTTACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGAGACAGTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGATTCAAGCATAAGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGGGAAGACTGAATTGGTCGGACTGAGTAACTTCCCAAACCTTGTCCTCTAGTGTAAGAACCATTAAACTAACCCCCCTTTCGAAATCTCTTTGATGTCGATGCTGTGGTGAAGTAGTCTAGCTTCACTCCTTCCACATCTACCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCGCAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAACATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="+" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="63772" stop="123319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121611" g_stop="121797" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121798" i_stop="122541" i_length="744">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="122542" g_stop="123055" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="694" r_length="507" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="121611" e_stop="121797"/>
          <exon e_start="122542" e_stop="123055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTTAATGTTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGCGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTTGTGGTAGATGTGGAAGGAGTGAAGCTAGACTACTTCACCACAGCATCGACATCAAAGAGATTTCGAAAGGGGGGTTAGTTTAATGGTTCTTACACTAGAGGACAAGGTTTGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCCCTACAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAACACTTCTCCGAGAGGCTTATGCTTGAATCCAGAGAGTGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAACTGTCTCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTCATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTAACCAAAACGGCCGAGGTGATGGGCAAACTGGAGCCACTACATCACAACATGGTAGGGGCAACGGACAGACGAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGTGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGACTTCTGTATTGTTTGATCCTGGATCCACGTTTTCCTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTTCTTGATATGCCTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGATGTGATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCATCTCCTTTCTTTGTGCTAAGAAAATTATTAGTAAAGGGTGTTTAGCTTTCTTAGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGGACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAGAAATGGTTGACTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="122724" stop="121361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="122424" g_stop="121661" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="122424" e_stop="121661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAGGAAAACGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTTACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGAGACAGTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGATTCAAGCATAAGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGGGAAGACTGAATTGGTCGGACTGAGTAACTTCCCAAACCTTGTCCTCTAGTGTAAGAACCATTAAACTAACCCCCCTTTCGAAATCTCTTTGATGTCGATGCTGTGGTGAAGTAGTCTAGCTTCACTCCTTCCACATCTACCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCGCAAACCGGCGAATCCGCTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123338" stop="121977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123038" g_stop="122277" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123038" e_stop="122277"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCTAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACAAAGAAAGGAGATGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAGGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123338" stop="122078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123038" g_stop="122378" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123038" e_stop="122378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCTAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACAAAGAAAGGAGATGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123856" stop="122578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123556" g_stop="122877" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123556" e_stop="122877"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCTTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123927" stop="65076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123627" g_stop="122915" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123627" e_stop="122915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCTTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTG-CTCACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123927" stop="122732"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123627" g_stop="123032" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123627" e_stop="123032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCTTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123927" stop="122802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123627" g_stop="123102" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123627" e_stop="123102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCTTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0107N23-cqGv5/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0107N23.1" temp_strand="-" temp_description="C04HBa0107N23.1  CU915742.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0107N23 sequenced_by:sanger upload_account_name:uk">
        <position start="123856" stop="122898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="123556" g_stop="123198" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0107N23.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0107N23.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="123556" e_stop="123198"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>78</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="16356" PGL_stop="22648"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16356" e_stop="16418"/>
            <exon e_start="18102" e_stop="18154"/>
            <exon e_start="18245" e_stop="18307"/>
            <exon e_start="18962" e_stop="19006"/>
            <exon e_start="19303" e_stop="19358"/>
            <exon e_start="20710" e_stop="20894"/>
            <exon e_start="21484" e_stop="21531"/>
            <exon e_start="21701" e_stop="21808"/>
            <exon e_start="22593" e_stop="22648"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.652" acc_prob="0.998" e_score="0.984"/>
          <exon-intron don_prob="0.998" acc_prob="0.926" e_score="0.943"/>
          <exon-intron don_prob="0.977" acc_prob="0.979" e_score="0.968"/>
          <exon-intron don_prob="0.981" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.461" e_score="0.964"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.992" acc_prob="0.853" e_score="1.000"/>
          <exon-intron don_prob="0.806" acc_prob="0.758" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="16356" e_stop="16418" e_length="63"/>
          </exon>
          <intron i_serial="1" don_prob="0.652" acc_prob="0.998">
            <gDNA_intron_boundary i_start="16419" i_stop="18101" i_length="1683"/>
          </intron>
          <exon e_serial="2" e_score="0.943">
            <gDNA_exon_boundary e_start="18102" e_stop="18154" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.926">
            <gDNA_intron_boundary i_start="18155" i_stop="18244" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.968">
            <gDNA_exon_boundary e_start="18245" e_stop="18307" e_length="63"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.979">
            <gDNA_intron_boundary i_start="18308" i_stop="18961" i_length="654"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18962" e_stop="19006" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.977">
            <gDNA_intron_boundary i_start="19007" i_stop="19302" i_length="296"/>
          </intron>
          <exon e_serial="5" e_score="0.964">
            <gDNA_exon_boundary e_start="19303" e_stop="19358" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.461">
            <gDNA_intron_boundary i_start="19359" i_stop="20709" i_length="1351"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="20710" e_stop="20894" e_length="185"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="20895" i_stop="21483" i_length="589"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21484" e_stop="21531" e_length="48"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.853">
            <gDNA_intron_boundary i_start="21532" i_stop="21700" i_length="169"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21701" e_stop="21808" e_length="108"/>
          </exon>
          <intron i_serial="8" don_prob="0.806" acc_prob="0.758">
            <gDNA_intron_boundary i_start="21809" i_stop="22592" i_length="784"/>
          </intron>
          <exon e_serial="9" e_score="0.982">
            <gDNA_exon_boundary e_start="22593" e_stop="22648" e_length="56"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16356" stop="16418"/>
              <exon start="18102" stop="18154"/>
              <exon start="18245" stop="18307"/>
              <exon start="18962" stop="19006"/>
              <exon start="19303" stop="19358"/>
              <exon start="20710" stop="20894"/>
              <exon start="21484" stop="21531"/>
              <exon start="21701" stop="21808"/>
              <exon start="22593" stop="22648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E450584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16356" stop="16418"/>
              <exon start="18102" stop="18154"/>
              <exon start="18245" stop="18307"/>
              <exon start="18962" stop="19006"/>
              <exon start="19303" stop="19358"/>
              <exon start="20710" stop="20894"/>
              <exon start="21484" stop="21531"/>
              <exon start="21701" stop="21808"/>
              <exon start="22593" stop="22628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E423500" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAATGACACACTGACAGACTTTTCGTTGGCTCTTACTGTGAGCTACATTGCTTACTACACT : GCTCAAGAGGAAGCTGAAGCTTCTGGTATCTTGACTCTCGTAGCACTAGGGAT : GGTTTTTGCAATGTCAAAGGATACCCATAGAGCTGGGGGAAAGCAGAGCTTGCATGAGTTTTG : GGAAATGATTGCCTACATTGCGAATACTTTAATATTCATATTGAG : CGGAGTTATCATAGCTCAAAGCATCTTCAGTATCGGAAATCTCGAGAACAATACAG : GGAGATCGTGGGGCTATGTCTTTCTTCTCTATATCATTCTTCAAGTAGCTCGAACCATAGTTGTTTTTGCGTTCTATCCTGCCCTTTGCTACTTCGGTTATGGTTTGAATTGGAAAGAAGCTATCATTATCATATGGTCTGGTTTGAGAGGAGCTGTTGGTTTGGCACTCTCCCTATCTATTAAA : GATGCTAGTGGTGATCCAAAGTATCTCAGCTCAGAAACTGGAGCTATG : TTTGTTTTCCTCACTGGTGGAAGTGTGTTACTGACACTCATTATCAATGGATCTACCACACAATTACTTCTAAGTCTCTTTGGTATGGATGCTCTATCAGAAAGTGAG : AAAACCATGGTCAATTATGCAAAGCATCAACTATTGAGAAAAGCTGAAGAGTTTTC</gDNA_template>
            <first_frame> Y  N  D  T  L  T  D  F  S  L  A  L  T  V  S  Y  I  A  Y  Y  T  :  A  Q  E  E  A  E  A  S  G  I  L  T  L  V  A  L  G  M :   V  F  A  M  S  K  D  T  H  R  A  G  G  K  Q  S  L  H  E  F  W :   E  M  I  A  Y  I  A  N  T  L  I  F  I  L  S :   G  V  I  I  A  Q  S  I  F  S  I  G  N  L  E  N  N  T   : G  R  S  W  G  Y  V  F  L  L  Y  I  I  L  Q  V  A  R  T  I  V  V  F  A  F  Y  P  A  L  C  Y  F  G  Y  G  L  N  W  K  E  A  I  I  I  I  W  S  G  L  R  G  A  V  G  L  A  L  S  L  S  I  K  :  D  A  S  G  D  P  K  Y  L  S  S  E  T  G  A  M  :  F  V  F  L  T  G  G  S  V  L  L  T  L  I  I  N  G  S  T  T  Q  L  L  L  S  L  F  G  M  D  A  L  S  E  S  E  :  K  T  M  V  N  Y  A  K  H  Q  L  L  R  K  A  E  E  F   </first_frame>
            <second_frame>  T  M  T  H  *  Q  T  F  R  W  L  L  L  *  A  T  L  L  T  T  L :   L  K  R  K  L  K  L  L  V  S  *  L  S  *  H  *  G   : W  F  L  Q  C  Q  R  I  P  I  E  L  G  E  S  R  A  C  M  S  F   : G  K  *  L  P  T  L  R  I  L  *  Y  S  Y  *   : A  E  L  S  *  L  K  A  S  S  V  S  E  I  S  R  T  I  Q  :  G  D  R  G  A  M  S  F  F  S  I  S  F  F  K  *  L  E  P  *  L  F  L  R  S  I  L  P  F  A  T  S  V  M  V  *  I  G  K  K  L  S  L  S  Y  G  L  V  *  E  E  L  L  V  W  H  S  P  Y  L  L  K :   M  L  V  V  I  Q  S  I  S  A  Q  K  L  E  L  C :   L  F  S  S  L  V  E  V  C  Y  *  H  S  L  S  M  D  L  P  H  N  Y  F  *  V  S  L  V  W  M  L  Y  Q  K  V  R :   K  P  W  S  I  M  Q  S  I  N  Y  *  E  K  L  K  S  F  </second_frame>
            <third_frame>   Q  *  H  T  D  R  L  F  V  G  S  Y  C  E  L  H  C  L  L  H   : C  S  R  G  S  *  S  F  W  Y  L  D  S  R  S  T  R  D  :  G  F  C  N  V  K  G  Y  P  *  S  W  G  K  A  E  L  A  *  V  L  :  G  N  D  C  L  H  C  E  Y  F  N  I  H  I  E  :  R  S  Y  H  S  S  K  H  L  Q  Y  R  K  S  R  E  Q  Y  R :   E  I  V  G  L  C  L  S  S  L  Y  H  S  S  S  S  S  N  H  S  C  F  C  V  L  S  C  P  L  L  L  R  L  W  F  E  L  E  R  S  Y  H  Y  H  M  V  W  F  E  R  S  C  W  F  G  T  L  P  I  Y  *   : R  C  *  W  *  S  K  V  S  Q  L  R  N  W  S  Y   : V  C  F  P  H  W  W  K  C  V  T  D  T  H  Y  Q  W  I  Y  H  T  I  T  S  K  S  L  W  Y  G  C  S  I  R  K  *   : E  N  H  G  Q  L  C  K  A  S  T  I  E  K  S  *  R  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16356" stop="16418"/>
                    <exon start="18102" stop="18154"/>
                    <exon start="18245" stop="18307"/>
                    <exon start="18962" stop="19006"/>
                    <exon start="19303" stop="19358"/>
                    <exon start="20710" stop="20894"/>
                    <exon start="21484" stop="21531"/>
                    <exon start="21701" stop="21808"/>
                    <exon start="22593" stop="22646"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YNDTLTDFSLALTVSYIAYYTAQEEAEASGILTLVALGMVFAMSKDTHRAGGKQSLHEFWEMIAYIANTLIFILSGVIIAQSIFSIGNLENNTGRSWGYVFLLYIILQVARTIVVFAFYPALCYFGYGLNWKEAIIIIWSGLRGAVGLALSLSIKDASGDPKYLSSETGAMFVFLTGGSVLLTLIINGSTTQLLLSLFGMDALSESEKTMVNYAKHQLLRKAEEF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="25483" PGL_stop="26919"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25483" e_stop="25548"/>
            <exon e_start="25825" e_stop="26092"/>
            <exon e_start="26534" e_stop="26919"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.947" acc_prob="0.514" e_score="0.894"/>
          <exon-intron don_prob="0.995" acc_prob="0.722" e_score="0.970"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.894">
            <gDNA_exon_boundary e_start="25483" e_stop="25548" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.947" acc_prob="0.514">
            <gDNA_intron_boundary i_start="25549" i_stop="25824" i_length="276"/>
          </intron>
          <exon e_serial="2" e_score="0.970">
            <gDNA_exon_boundary e_start="25825" e_stop="26092" e_length="268"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.722">
            <gDNA_intron_boundary i_start="26093" i_stop="26533" i_length="441"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="26534" e_stop="26919" e_length="386"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25483" stop="25548"/>
              <exon start="25825" stop="26092"/>
              <exon start="26534" stop="26896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588688" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25905" stop="26092"/>
              <exon start="26534" stop="26919"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351779" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAAGCTGGAGTGGGTCATTTCAGTACTGGCCCGTGATAATGCAGTAGAAGAACTGTTGTGGAAG : GAGTGCACCGTTGTTGTGTCTAAGCTCTTGGCACCTGATATATTTAAGAAATTCTCAATGCAAGAAGTAAGAAGTATTATTGATGAAAGATCAGTCATGAATACTTTCTCAAGTCAAGAAGTAATAGAAACTTCTCATCATTCCATCAACTTCCTGTTAAGTGGTTGCTTGAGAGATCAAAGTACCGAACAACTTATTGAGTGCCCAGCAGTATTACCATGTTCCATTTTAAGTGAAAGCATCCCGTACAGCAGCGCCAATGGAACGG : CTGAGAGTTTTGGATCATGTTCTTATTCGAAGTACAAAGTTGTGAAACCAGCAAGGATAGTTCGAATCGACATTTCAGCAGTATGAGAGTTGGCCATGCAAAATTTTAGAAAGAAGTAAAAATTGGTAAGCCAAGGAGATAACACAATGTCTAACTTTGAATTGCATGGATTAGGTTGGTCATAGCTTTTTCATCTTTCAAGAGCGTACTTGCTGTCGTTCTATGACTTCACTTTTCCATCATGAAAAAGCTGTAAAGTTACTTGGCTTCATTTTTTTCTTTGTCGGGGCTAAGATTGTCTGCCCATTCTATTTCTGACATCAGTGCAATTTACACTGCTTGATAATTTATGTAAAAAGTCTGCCACTTGCAACTATAATATTTAC</gDNA_template>
            <first_frame> I  K  L  E  W  V  I  S  V  L  A  R  D  N  A  V  E  E  L  L  W  K  :  E  C  T  V  V  V  S  K  L  L  A  P  D  I  F  K  K  F  S  M  Q  E  V  R  S  I  I  D  E  R  S  V  M  N  T  F  S  S  Q  E  V  I  E  T  S  H  H  S  I  N  F  L  L  S  G  C  L  R  D  Q  S  T  E  Q  L  I  E  C  P  A  V  L  P  C  S  I  L  S  E  S  I  P  Y  S  S  A  N  G  T   : A  E  S  F  G  S  C  S  Y  S  K  Y  K  V  V  K  P  A  R  I  V  R  I  D  I  S  A  V  *  E  L  A  M  Q  N  F  R  K  K  *  K  L  V  S  Q  G  D  N  T  M  S  N  F  E  L  H  G  L  G  W  S  *  L  F  H  L  S  R  A  Y  L  L  S  F  Y  D  F  T  F  P  S  *  K  S  C  K  V  T  W  L  H  F  F  L  C  R  G  *  D  C  L  P  I  L  F  L  T  S  V  Q  F  T  L  L  D  N  L  C  K  K  S  A  T  C  N  Y  N  I  Y </first_frame>
            <second_frame>  L  S  W  S  G  S  F  Q  Y  W  P  V  I  M  Q  *  K  N  C  C  G  R :   S  A  P  L  L  C  L  S  S  W  H  L  I  Y  L  R  N  S  Q  C  K  K  *  E  V  L  L  M  K  D  Q  S  *  I  L  S  Q  V  K  K  *  *  K  L  L  I  I  P  S  T  S  C  *  V  V  A  *  E  I  K  V  P  N  N  L  L  S  A  Q  Q  Y  Y  H  V  P  F  *  V  K  A  S  R  T  A  A  P  M  E  R  :  L  R  V  L  D  H  V  L  I  R  S  T  K  L  *  N  Q  Q  G  *  F  E  S  T  F  Q  Q  Y  E  S  W  P  C  K  I  L  E  R  S  K  N  W  *  A  K  E  I  T  Q  C  L  T  L  N  C  M  D  *  V  G  H  S  F  F  I  F  Q  E  R  T  C  C  R  S  M  T  S  L  F  H  H  E  K  A  V  K  L  L  G  F  I  F  F  F  V  G  A  K  I  V  C  P  F  Y  F  *  H  Q  C  N  L  H  C  L  I  I  Y  V  K  S  L  P  L  A  T  I  I  F   </second_frame>
            <third_frame>   *  A  G  V  G  H  F  S  T  G  P  *  *  C  S  R  R  T  V  V  E   : G  V  H  R  C  C  V  *  A  L  G  T  *  Y  I  *  E  I  L  N  A  R  S  K  K  Y  Y  *  *  K  I  S  H  E  Y  F  L  K  S  R  S  N  R  N  F  S  S  F  H  Q  L  P  V  K  W  L  L  E  R  S  K  Y  R  T  T  Y  *  V  P  S  S  I  T  M  F  H  F  K  *  K  H  P  V  Q  Q  R  Q  W  N  G :   *  E  F  W  I  M  F  L  F  E  V  Q  S  C  E  T  S  K  D  S  S  N  R  H  F  S  S  M  R  V  G  H  A  K  F  *  K  E  V  K  I  G  K  P  R  R  *  H  N  V  *  L  *  I  A  W  I  R  L  V  I  A  F  S  S  F  K  S  V  L  A  V  V  L  *  L  H  F  S  I  M  K  K  L  *  S  Y  L  A  S  F  F  S  L  S  G  L  R  L  S  A  H  S  I  S  D  I  S  A  I  Y  T  A  *  *  F  M  *  K  V  C  H  L  Q  L  *  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25483" stop="25548"/>
                    <exon start="25825" stop="26092"/>
                    <exon start="26534" stop="26619"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKLEWVISVLARDNAVEELLWKECTVVVSKLLAPDIFKKFSMQEVRSIIDERSVMNTFSSQEVIETSHHSINFLLSGCLRDQSTEQLIECPAVLPCSILSESIPYSSANGTAESFGSCSYSKYKVVKPARIVRIDISAV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="44063" PGL_stop="45057"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44063" e_stop="45057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="44063" e_stop="45057" e_length="995"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44063" stop="44893"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44180" stop="44982"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44185" stop="44709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235648" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44186" stop="44640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44188" stop="44664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44188" stop="44645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337530" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44190" stop="44747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44190" stop="44704"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44190" stop="44686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44191" stop="44674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44197" stop="44845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44198" stop="44646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44204" stop="44652"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277566" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44213" stop="44842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44215" stop="44895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459365" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44352" stop="45027"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E465718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44355" stop="45020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713073" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44374" stop="44945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44374" stop="44895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E230963" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44374" stop="44872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44374" stop="44803"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44397" stop="45057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339159" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44431" stop="45020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44489" stop="45057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E394748" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44533" stop="45057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248382" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44548" stop="44861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTCCAATAAATACTCTTCTTAATCTTTTTCTCTCTCTAAGAAGCTTCCTCGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAAATCCAGATCCCTTTCCCGATCCGATGATCCATCTTACTCATCTTCCTCCTCCTCCTCCAACAAAGGCGGTAGCGTCGGAGGAATTTCTACTCCTACGAGCGTGTTACCTACTTTATCCAACGAGATCTCAGCTGATGAGTGGTCCGACATCTCTACCGCCGGAGTTTACTCCGATCTCGTTCGAGCGTTTTCCGTTATCGATAACGGAGACGGTAAGATTAAGAAGGAGAAACTCGAAGCGATTTTAAGCAGAGTTGGAGGTAAATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAACCATAATATATAACATATATATAGTTACTC</gDNA_template>
            <first_frame> P  S  N  K  Y  S  S  *  S  F  S  L  S  K  K  L  P  R  S  L  V  M  E  S  Y  L  N  L  L  H  F  F  F  L  S  T  S  F  I  N  S  Y  S  F  S  K  F  S  T  M  K  F  P  K  N  F  F  K  S  K  K  S  R  S  L  S  R  S  D  D  P  S  Y  S  S  S  S  S  S  S  N  K  G  G  S  V  G  G  I  S  T  P  T  S  V  L  P  T  L  S  N  E  I  S  A  D  E  W  S  D  I  S  T  A  G  V  Y  S  D  L  V  R  A  F  S  V  I  D  N  G  D  G  K  I  K  K  E  K  L  E  A  I  L  S  R  V  G  G  K  S  P  P  S  E  E  E  L  V  L  L  L  D  E  L  D  E  N  G  D  G  C  I  S  L  E  N  F  E  T  I  T  S  A  F  E  S  T  P  T  S  A  A  G  D  A  G  E  M  R  D  A  F  D  F  F  D  E  D  H  D  G  K  I  T  G  E  E  L  F  N  V  F  R  M  I  G  D  E  R  C  T  L  E  E  C  K  R  M  I  T  S  V  D  K  N  G  D  G  F  V  C  F  D  D  F  C  L  M  M  E  Q  Q  R  *  K  K  K  N  R  N  C  L  N  L  F  Y  F  L  C  *  L  G  K  R  V  V  R  L  I  R  T  L  D  L  G  Q  S  N  G  *  D  *  S  I  F  G  R  N  I  Y  K  M  R  T  T  S  S  L  L  S  L  N  H  N  I  *  H  I  Y  S  Y   </first_frame>
            <second_frame>  P  P  I  N  T  L  L  N  L  F  L  S  L  R  S  F  L  E  A  *  *  W  S  P  T  *  T  S  S  I  S  S  S  F  Q  P  P  S  S  I  P  I  P  S  P  N  S  Q  P  *  S  S  P  K  T  S  S  S  P  K  N  P  D  P  F  P  D  P  M  I  H  L  T  H  L  P  P  P  P  P  T  K  A  V  A  S  E  E  F  L  L  L  R  A  C  Y  L  L  Y  P  T  R  S  Q  L  M  S  G  P  T  S  L  P  P  E  F  T  P  I  S  F  E  R  F  P  L  S  I  T  E  T  V  R  L  R  R  R  N  S  K  R  F  *  A  E  L  E  V  N  L  H  R  V  K  R  N  L  C  C  C  L  M  N  W  M  R  T  E  M  D  V  L  V  *  R  I  L  K  L  L  P  R  R  L  S  R  H  R  R  R  Q  R  E  M  Q  V  R  *  E  M  R  L  I  S  S  M  R  I  T  T  G  K  S  P  V  R  N  C  L  T  C  L  E  *  S  A  M  N  G  A  R  *  R  N  V  S  V  *  *  Q  V  *  I  K  M  E  M  D  S  S  A  S  T  I  S  V  L  *  W  N  S  R  D  K  R  K  K  I  E  I  V  L  I  Y  F  I  S  C  V  S  W  E  K  G  L  *  D  *  L  G  P  L  I  *  V  N  L  M  A  R  I  D  L  Y  L  E  E  I  Y  I  K  *  E  Q  L  P  P  F  *  V  *  T  I  I  Y  N  I  Y  I  V  T  </second_frame>
            <third_frame>   L  Q  *  I  L  F  L  I  F  F  S  L  *  E  A  S  S  K  L  S  N  G  V  L  L  K  P  P  P  F  L  L  P  F  N  L  L  H  Q  F  L  F  L  L  Q  I  L  N  H  E  V  P  Q  K  L  L  Q  V  Q  K  I  Q  I  P  F  P  I  R  *  S  I  L  L  I  F  L  L  L  L  Q  Q  R  R  *  R  R  R  N  F  Y  S  Y  E  R  V  T  Y  F  I  Q  R  D  L  S  *  *  V  V  R  H  L  Y  R  R  S  L  L  R  S  R  S  S  V  F  R  Y  R  *  R  R  R  *  D  *  E  G  E  T  R  S  D  F  K  Q  S  W  R  *  I  S  T  E  *  R  G  T  C  V  V  A  *  *  I  G  *  E  R  R  W  M  Y  *  F  R  E  F  *  N  Y  Y  L  G  V  *  V  D  T  D  V  G  S  G  R  C  R  *  D  E  R  C  V  *  F  L  R  *  G  S  R  R  E  N  H  R  *  G  I  V  *  R  V  *  N  D  R  R  *  T  V  H  V  R  G  M  *  A  Y  D  N  K  C  R  *  K  W  R  W  I  R  L  L  R  R  F  L  S  Y  D  G  T  A  E  I  K  E  K  K  *  K  L  S  *  F  I  L  F  L  V  L  V  G  K  K  G  C  E  I  N  *  D  P  *  F  R  S  I  *  W  L  G  L  I  Y  I  W  K  K  Y  I  *  N  E  N  N  F  L  P  F  K  F  E  P  *  Y  I  T  Y  I  *  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44087" stop="44854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFSLSKKLPRSLVMESYLNLLHFFFLSTSFINSYSFSKFSTMKFPKNFFKSKKSRSLSRSDDPSYSSSSSSSNKGGSVGGISTPTSVLPTLSNEISADEWSDISTAGVYSDLVRAFSVIDNGDGKIKKEKLEAILSRVGGKSPPSEEELVLLLDELDENGDGCISLENFETITSAFESTPTSAAGDAGEMRDAFDFFDEDHDGKITGEELFNVFRMIGDERCTLEECKRMITSVDKNGDGFVCFDDFCLMMEQQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="44114" e_stop="44244"/>
            <exon e_start="44509" e_stop="45057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44114" e_stop="44244" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="44245" i_stop="44508" i_length="264"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="44509" e_stop="45057" e_length="549"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44114" stop="44244"/>
              <exon start="44509" stop="44895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297184" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44533" stop="45057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248382" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44548" stop="44861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232759" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGAAGCTTAGTAATGGAGTCCTACTTAAACCTCCTCCATTTCTTCTTCCTTTCAACCTCCTTCATCAATTCCTATTCCTTCTCCAAATTCTCAACCATGAAGTTCCCCAAAAACTTCTTCAAGTCCAAAAA : ATCTCCACCGAGTGAAGAGGAACTTGTGTTGTTGCTTGATGAATTGGATGAGAACGGAGATGGATGTATTAGTTTAGAGAATTTTGAAACTATTACCTCGGCGTTTGAGTCGACACCGACGTCGGCAGCGGGAGATGCAGGTGAGATGAGAGATGCGTTTGATTTCTTCGATGAGGATCACGACGGGAAAATCACCGGTGAGGAATTGTTTAACGTGTTTAGAATGATCGGCGATGAACGGTGCACGTTAGAGGAATGTAAGCGTATGATAACAAGTGTAGATAAAAATGGAGATGGATTCGTCTGCTTCGACGATTTCTGTCTTATGATGGAACAGCAGAGATAAAAGAAAAAAAATAGAAATTGTCTTAATTTATTTTATTTCTTGTGTTAGTTGGGAAAAAGGGTTGTGAGATTAATTAGGACCCTTGATTTAGGTCAATCTAATGGCTAGGATTGATCTATATTTGGAAGAAATATATATAAAATGAGAACAACTTCCTCCCTTTTAAGTTTGAACCATAATATATAACATATATATAGTTACTC</gDNA_template>
            <first_frame> R  S  L  V  M  E  S  Y  L  N  L  L  H  F  F  F  L  S  T  S  F  I  N  S  Y  S  F  S  K  F  S  T  M  K  F  P  K  N  F  F  K  S  K  K :   S  P  P  S  E  E  E  L  V  L  L  L  D  E  L  D  E  N  G  D  G  C  I  S  L  E  N  F  E  T  I  T  S  A  F  E  S  T  P  T  S  A  A  G  D  A  G  E  M  R  D  A  F  D  F  F  D  E  D  H  D  G  K  I  T  G  E  E  L  F  N  V  F  R  M  I  G  D  E  R  C  T  L  E  E  C  K  R  M  I  T  S  V  D  K  N  G  D  G  F  V  C  F  D  D  F  C  L  M  M  E  Q  Q  R  *  K  K  K  N  R  N  C  L  N  L  F  Y  F  L  C  *  L  G  K  R  V  V  R  L  I  R  T  L  D  L  G  Q  S  N  G  *  D  *  S  I  F  G  R  N  I  Y  K  M  R  T  T  S  S  L  L  S  L  N  H  N  I  *  H  I  Y  S  Y   </first_frame>
            <second_frame>  E  A  *  *  W  S  P  T  *  T  S  S  I  S  S  S  F  Q  P  P  S  S  I  P  I  P  S  P  N  S  Q  P  *  S  S  P  K  T  S  S  S  P  K   : N  L  H  R  V  K  R  N  L  C  C  C  L  M  N  W  M  R  T  E  M  D  V  L  V  *  R  I  L  K  L  L  P  R  R  L  S  R  H  R  R  R  Q  R  E  M  Q  V  R  *  E  M  R  L  I  S  S  M  R  I  T  T  G  K  S  P  V  R  N  C  L  T  C  L  E  *  S  A  M  N  G  A  R  *  R  N  V  S  V  *  *  Q  V  *  I  K  M  E  M  D  S  S  A  S  T  I  S  V  L  *  W  N  S  R  D  K  R  K  K  I  E  I  V  L  I  Y  F  I  S  C  V  S  W  E  K  G  L  *  D  *  L  G  P  L  I  *  V  N  L  M  A  R  I  D  L  Y  L  E  E  I  Y  I  K  *  E  Q  L  P  P  F  *  V  *  T  I  I  Y  N  I  Y  I  V  T  </second_frame>
            <third_frame>   K  L  S  N  G  V  L  L  K  P  P  P  F  L  L  P  F  N  L  L  H  Q  F  L  F  L  L  Q  I  L  N  H  E  V  P  Q  K  L  L  Q  V  Q  K  :  I  S  T  E  *  R  G  T  C  V  V  A  *  *  I  G  *  E  R  R  W  M  Y  *  F  R  E  F  *  N  Y  Y  L  G  V  *  V  D  T  D  V  G  S  G  R  C  R  *  D  E  R  C  V  *  F  L  R  *  G  S  R  R  E  N  H  R  *  G  I  V  *  R  V  *  N  D  R  R  *  T  V  H  V  R  G  M  *  A  Y  D  N  K  C  R  *  K  W  R  W  I  R  L  L  R  R  F  L  S  Y  D  G  T  A  E  I  K  E  K  K  *  K  L  S  *  F  I  L  F  L  V  L  V  G  K  K  G  C  E  I  N  *  D  P  *  F  R  S  I  *  W  L  G  L  I  Y  I  W  K  K  Y  I  *  N  E  N  N  F  L  P  F  K  F  E  P  *  Y  I  T  Y  I  *  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44114" stop="44244"/>
                    <exon start="44509" stop="44854"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>474</number_coding_nucleotides>
                  <number_encoded_amino_acids>158</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSLVMESYLNLLHFFFLSTSFINSYSFSKFSTMKFPKNFFKSKKSPPSEEELVLLLDELDENGDGCISLENFETITSAFESTPTSAAGDAGEMRDAFDFFDEDHDGKITGEELFNVFRMIGDERCTLEECKRMITSVDKNGDGFVCFDDFCLMMEQQR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="45032" PGL_stop="44316"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45032" e_stop="44316"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="45032" e_stop="44316" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45032" stop="44316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578013" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGGTTCAAACTTAAAAGGGAGGAAGTTGTTCTCATTTTATATATATTTCTTCCAAATATAGATCAATCCTAGCCATTAGATTGACCTAAATCAAGGGTCCTAATTAATCTCACAACCCTTTTTCCCAACTAACACAAGAAATAAAATAAATTAAGACAATTTCTATTTTTTTTCTTTTATCTCTGCTGTTCCATCATAAGACAGAAATCGTCGAAGCAGACGAATCCATCTCCATTTTTATCTACACTTGTTATCATACGCTTACATTCCTCTAACGTGCACCGTTCATCGCCGATCATTCTAAACACGTTAAACAATTCCTCACCGGTGATTTTCCCGTCGTGATCCTCATCGAAGAAATCAAACGCATCTCTCATCTCACCTGCATCTCCCGCTGCCGACGTCGGTGTCGACTCAAACGCCGAGGTAATAGTTTCAAAATTCTCTAAACTAATACATCCATCTCCGTTCTCATCCAATTCATCAAGCAACAACACAAGTTCCTCTTCACTCGGTGGAGATTTACCTCCAACTCTGCTTAAAATCGCTTCGAGTTTCTCCTTCTTAATCTTACCGTCTCCGTTATCGATAACGGAAAACGCTCGAACGAGATCGGAGTAAACTCCGGCGGTAGAGATGTCGGACCACTCATCAGCTGAGATCTCGTTGGATAAAGTAGGTAACACGCTCGTAGGAGTAGAAATTCCTCCGACGC</gDNA_template>
            <first_frame> Y  G  S  N  L  K  G  R  K  L  F  S  F  Y  I  Y  F  F  Q  I  *  I  N  P  S  H  *  I  D  L  N  Q  G  S  *  L  I  S  Q  P  F  F  P  T  N  T  R  N  K  I  N  *  D  N  F  Y  F  F  S  F  I  S  A  V  P  S  *  D  R  N  R  R  S  R  R  I  H  L  H  F  Y  L  H  L  L  S  Y  A  Y  I  P  L  T  C  T  V  H  R  R  S  F  *  T  R  *  T  I  P  H  R  *  F  S  R  R  D  P  H  R  R  N  Q  T  H  L  S  S  H  L  H  L  P  L  P  T  S  V  S  T  Q  T  P  R  *  *  F  Q  N  S  L  N  *  Y  I  H  L  R  S  H  P  I  H  Q  A  T  T  Q  V  P  L  H  S  V  E  I  Y  L  Q  L  C  L  K  S  L  R  V  S  P  S  *  S  Y  R  L  R  Y  R  *  R  K  T  L  E  R  D  R  S  K  L  R  R  *  R  C  R  T  T  H  Q  L  R  S  R  W  I  K  *  V  T  R  S  *  E  *  K  F  L  R  R </first_frame>
            <second_frame>  M  V  Q  T  *  K  G  G  S  C  S  H  F  I  Y  I  S  S  K  Y  R  S  I  L  A  I  R  L  T  *  I  K  G  P  N  *  S  H  N  P  F  S  Q  L  T  Q  E  I  K  *  I  K  T  I  S  I  F  F  L  L  S  L  L  F  H  H  K  T  E  I  V  E  A  D  E  S  I  S  I  F  I  Y  T  C  Y  H  T  L  T  F  L  *  R  A  P  F  I  A  D  H  S  K  H  V  K  Q  F  L  T  G  D  F  P  V  V  I  L  I  E  E  I  K  R  I  S  H  L  T  C  I  S  R  C  R  R  R  C  R  L  K  R  R  G  N  S  F  K  I  L  *  T  N  T  S  I  S  V  L  I  Q  F  I  K  Q  Q  H  K  F  L  F  T  R  W  R  F  T  S  N  S  A  *  N  R  F  E  F  L  L  L  N  L  T  V  S  V  I  D  N  G  K  R  S  N  E  I  G  V  N  S  G  G  R  D  V  G  P  L  I  S  *  D  L  V  G  *  S  R  *  H  A  R  R  S  R  N  S  S  D   </second_frame>
            <third_frame>   W  F  K  L  K  R  E  E  V  V  L  I  L  Y  I  F  L  P  N  I  D  Q  S  *  P  L  D  *  P  K  S  R  V  L  I  N  L  T  T  L  F  P  N  *  H  K  K  *  N  K  L  R  Q  F  L  F  F  F  F  Y  L  C  C  S  I  I  R  Q  K  S  S  K  Q  T  N  P  S  P  F  L  S  T  L  V  I  I  R  L  H  S  S  N  V  H  R  S  S  P  I  I  L  N  T  L  N  N  S  S  P  V  I  F  P  S  *  S  S  S  K  K  S  N  A  S  L  I  S  P  A  S  P  A  A  D  V  G  V  D  S  N  A  E  V  I  V  S  K  F  S  K  L  I  H  P  S  P  F  S  S  N  S  S  S  N  N  T  S  S  S  S  L  G  G  D  L  P  P  T  L  L  K  I  A  S  S  F  S  F  L  I  L  P  S  P  L  S  I  T  E  N  A  R  T  R  S  E  *  T  P  A  V  E  M  S  D  H  S  S  A  E  I  S  L  D  K  V  G  N  T  L  V  G  V  E  I  P  P  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44685" stop="44410"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSKKSNASLISPASPAADVGVDSNAEVIVSKFSKLIHPSPFSSNSSSNNTSSSSLGGDLPPTLLKIASSFSFLILPSPLSITENARTRSE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44886" stop="44686"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKLRQFLFFFFYLCCSIIRQKSSKQTNPSPFLSTLVIIRLHSSNVHRSSPIILNTLNNSSPVIFPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="49842" PGL_stop="48550"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49842" e_stop="48550"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49842" e_stop="48550" e_length="1293"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49842" stop="49300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253318" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49841" stop="49153"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375537" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49841" stop="49305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253220" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49176" stop="48550"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375536" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49161" stop="48551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375762" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGGATCATAATAAGTTAATTATGTCAAAAACTTGGATCATAATAAGTTAATTATGTCAACTTTGTGGTATTCTTGCATTTGGGTTGGTAAAGGACAAGAGCAATTTCTTCCTGGTATCTTGTTGCCTAAGTCGAGAGAGTTTGGTAGCACGGTGAAATTACTGGGGTTGCTTGGGGCATTTGTTGCACGATATTCAGAGCAGTCTCCCTATATTCTTGTCAAAAAAGATGATGTGCTCTTGTTCACTGTATTTGGTATAGTTCATATATCGAAGATAACTTTGCTTATCTAGGCTTTGGTCCTGGTCCTTATTTTGCTTATGATATATTTGCTGAGTTACTTGGTAAGACAGTGGATGTATTTCACCAGCAGTTCTATCTTGATGAAGAACTTGCACCGCAAAAAACTGACCAACAGATTGCCTCACTTTATCACCTAACTACTACAATGAATCAACATTGTTACATTGATAGCATCTTTGTCGAGAGTAATTTCTTGCAAGCAAGGTTCATATTTCAGCTTGTTTGGATCCTACTGTTGACGGAGCACAAGCTTAGGCCAAGCATAACTACTGATTCAAGTTTGGGCTCAATTATGTGTTATATAGTGCAACTTATTCATGGACTGAGCTACAAAGATCTATTGAGAATTATCTTGATTACATTTTTATGGAGTATGAGTGTGGCTTTCCAGTAAAAGAATTCCATTCTCACAATATCAAATCTGGGAGCGGTTAATAAAAAACCAGGTGAGGGCTACACAAAGGCAGAACAGATGGATGGTTGATGGTTGTCCAGGAAGTATACAAGATCACATTTTATAAATTTCCAACATTGCACAGTTTGTCTTGACTACAATTGGTAGGAGCGTGCTACTAACATTGTTCCTTACTCAAACCTTGAGGTCAAGGACGGGAGTATTGTTATGAACCCGCCTGCCGATACTTGTCACACAACTAGTTTTTGGGCCGAGGAGGAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAACAACTAGCTATGGGGAGAAGCAACAAAACTGGAAGGCCTTTGCAAAGGCGAATTTGGGACCCATGCCCATTTAAGAACTATCTAAAAGGATGACGGATGAGAAGGAGCGCTTTATGCAAATTGTTGACAAAATATCTAGTCCTTTCATCCCTTTCTTTGAGTTCTATTTCTAATCCATTTCTTCTTAGTGTGTTATTAAATTGCTTTGTAATTTCAATTATGAGTTCATAAATAGATTTATCGATTGTTTGAATTTCAA</gDNA_template>
            <first_frame> L  G  S  *  *  V  N  Y  V  K  N  L  D  H  N  K  L  I  M  S  T  L  W  Y  S  C  I  W  V  G  K  G  Q  E  Q  F  L  P  G  I  L  L  P  K  S  R  E  F  G  S  T  V  K  L  L  G  L  L  G  A  F  V  A  R  Y  S  E  Q  S  P  Y  I  L  V  K  K  D  D  V  L  L  F  T  V  F  G  I  V  H  I  S  K  I  T  L  L  I  *  A  L  V  L  V  L  I  L  L  M  I  Y  L  L  S  Y  L  V  R  Q  W  M  Y  F  T  S  S  S  I  L  M  K  N  L  H  R  K  K  L  T  N  R  L  P  H  F  I  T  *  L  L  Q  *  I  N  I  V  T  L  I  A  S  L  S  R  V  I  S  C  K  Q  G  S  Y  F  S  L  F  G  S  Y  C  *  R  S  T  S  L  G  Q  A  *  L  L  I  Q  V  W  A  Q  L  C  V  I  *  C  N  L  F  M  D  *  A  T  K  I  Y  *  E  L  S  *  L  H  F  Y  G  V  *  V  W  L  S  S  K  R  I  P  F  S  Q  Y  Q  I  W  E  R  L  I  K  N  Q  V  R  A  T  Q  R  Q  N  R  W  M  V  D  G  C  P  G  S  I  Q  D  H  I  L  *  I  S  N  I  A  Q  F  V  L  T  T  I  G  R  S  V  L  L  T  L  F  L  T  Q  T  L  R  S  R  T  G  V  L  L  *  T  R  L  P  I  L  V  T  Q  L  V  F  G  P  R  R  S  N  K  T  G  R  P  L  Q  R  R  I  W  D  P  C  P  F  N  N  *  L  W  G  E  A  T  K  L  E  G  L  C  K  G  E  F  G  T  H  A  H  L  R  T  I  *  K  D  D  G  *  E  G  A  L  Y  A  N  C  *  Q  N  I  *  S  F  H  P  F  L  *  V  L  F  L  I  H  F  F  L  V  C  Y  *  I  A  L  *  F  Q  L  *  V  H  K  *  I  Y  R  L  F  E  F  Q </first_frame>
            <second_frame>  L  D  H  N  K  L  I  M  S  K  T  W  I  I  I  S  *  L  C  Q  L  C  G  I  L  A  F  G  L  V  K  D  K  S  N  F  F  L  V  S  C  C  L  S  R  E  S  L  V  A  R  *  N  Y  W  G  C  L  G  H  L  L  H  D  I  Q  S  S  L  P  I  F  L  S  K  K  M  M  C  S  C  S  L  Y  L  V  *  F  I  Y  R  R  *  L  C  L  S  R  L  W  S  W  S  L  F  C  L  *  Y  I  C  *  V  T  W  *  D  S  G  C  I  S  P  A  V  L  S  *  *  R  T  C  T  A  K  N  *  P  T  D  C  L  T  L  S  P  N  Y  Y  N  E  S  T  L  L  H  *  *  H  L  C  R  E  *  F  L  A  S  K  V  H  I  S  A  C  L  D  P  T  V  D  G  A  Q  A  *  A  K  H  N  Y  *  F  K  F  G  L  N  Y  V  L  Y  S  A  T  Y  S  W  T  E  L  Q  R  S  I  E  N  Y  L  D  Y  I  F  M  E  Y  E  C  G  F  P  V  K  E  F  H  S  H  N  I  K  S  G  S  G  *  *  K  T  R  *  G  L  H  K  G  R  T  D  G  W  L  M  V  V  Q  E  V  Y  K  I  T  F  Y  K  F  P  T  L  H  S  L  S  *  L  Q  L  V  G  A  C  Y  *  H  C  S  L  L  K  P  *  G  Q  G  R  E  Y  C  Y  E  P  A  C  R  Y  L  S  H  N  *  F  L  G  R  G  G  A  T  K  L  E  G  L  C  K  G  E  F  G  T  H  A  H  L  T  T  S  Y  G  E  K  Q  Q  N  W  K  A  F  A  K  A  N  L  G  P  M  P  I  *  E  L  S  K  R  M  T  D  E  K  E  R  F  M  Q  I  V  D  K  I  S  S  P  F  I  P  F  F  E  F  Y  F  *  S  I  S  S  *  C  V  I  K  L  L  C  N  F  N  Y  E  F  I  N  R  F  I  D  C  L  N  F   </second_frame>
            <third_frame>   W  I  I  I  S  *  L  C  Q  K  L  G  S  *  *  V  N  Y  V  N  F  V  V  F  L  H  L  G  W  *  R  T  R  A  I  S  S  W  Y  L  V  A  *  V  E  R  V  W  *  H  G  E  I  T  G  V  A  W  G  I  C  C  T  I  F  R  A  V  S  L  Y  S  C  Q  K  R  *  C  A  L  V  H  C  I  W  Y  S  S  Y  I  E  D  N  F  A  Y  L  G  F  G  P  G  P  Y  F  A  Y  D  I  F  A  E  L  L  G  K  T  V  D  V  F  H  Q  Q  F  Y  L  D  E  E  L  A  P  Q  K  T  D  Q  Q  I  A  S  L  Y  H  L  T  T  T  M  N  Q  H  C  Y  I  D  S  I  F  V  E  S  N  F  L  Q  A  R  F  I  F  Q  L  V  W  I  L  L  L  T  E  H  K  L  R  P  S  I  T  T  D  S  S  L  G  S  I  M  C  Y  I  V  Q  L  I  H  G  L  S  Y  K  D  L  L  R  I  I  L  I  T  F  L  W  S  M  S  V  A  F  Q  *  K  N  S  I  L  T  I  S  N  L  G  A  V  N  K  K  P  G  E  G  Y  T  K  A  E  Q  M  D  G  *  W  L  S  R  K  Y  T  R  S  H  F  I  N  F  Q  H  C  T  V  C  L  D  Y  N  W  *  E  R  A  T  N  I  V  P  Y  S  N  L  E  V  K  D  G  S  I  V  M  N  P  P  A  D  T  C  H  T  T  S  F  W  A  E  E  E  Q  Q  N  W  K  A  F  A  K  A  N  L  G  P  M  P  I  *  Q  L  A  M  G  R  S  N  K  T  G  R  P  L  Q  R  R  I  W  D  P  C  P  F  K  N  Y  L  K  G  *  R  M  R  R  S  A  L  C  K  L  L  T  K  Y  L  V  L  S  S  L  S  L  S  S  I  S  N  P  F  L  L  S  V  L  L  N  C  F  V  I  S  I  M  S  S  *  I  D  L  S  I  V  *  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49609" stop="49145"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CALVHCIWYSSYIEDNFAYLGFGPGPYFAYDIFAELLGKTVDVFHQQFYLDEELAPQKTDQQIASLYHLTTTMNQHCYIDSIFVESNFLQARFIFQLVWILLLTEHKLRPSITTDSSLGSIMCYIVQLIHGLSYKDLLRIILITFLWSMSVAFQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="51070" PGL_stop="49853"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51070" e_stop="49853"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="51070" e_stop="49853" e_length="1218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51070" stop="50467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51031" stop="50259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50494" stop="49853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50494" stop="50041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50487" stop="49963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50486" stop="49887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212336" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTATCCCTAACTTGCCCTCGCCTCAGTCGTGGAATGCGCACCAGGTGTCCAATGAAAAGTCAAATAAGACTTCTGATATTGTTGTAGATGTTGAGAATGTAATAGTGCTAATCAAAAGTGGCAGTGCTGAAATGTTGGTTACTCAAGCAAAAGAGAAGATTTTTCATTCGATTTCGGATGAAACCAAAGAGGAGGTGGAGTTCCATGTTTCACAACACATTAGTGAACCACTTATATACAACAACAATGAGGCACACAAGATGTTTGTGTGAAAAATGAAGATAATTTTTAATTTTTTGGAGGTACAAAAAATATTTTAGATATATAGTAGAACTTTCTAGAATTTGGTAGAATAAATATCTTTAATATTTATAGTTAAGAAAAATCTATTGCTCTACATAATTAGATATTTATAGTAAAGTATAGAATAATTTAGATTCTTGTTAAATAATTAGAAGATAAGGTTATCTAAATTTTTCTTGTAGATCTTTCTAGAATAATTTTTAGAAGTATCTCTATACTAGTATAAATAGGGGTGGTCATAGTCATTTGTAATCAACCCAAACCAAATAGTCTATCAAAATTCTCTTATTCAAAATATTTCTTCACCTTTCTAGTTTCCTCTTTTTAGTTGAATCTTCCGATCTTATTTAACGATCTTGAGCTAGGAGAAGATTTACTGATTATACTTTTCTTCTGCTATTCTCTACAGTTTGATGGATATTCTTTAGGATGTAAGGATGTTATTCTAGAATCACACAAGGTGCTTATGATTACCACAGATACTATTGAGGAAAATGACTATGCTATTGATGTTGATAATGAAGACAGGACTGAGGAAGAAGAAGAAGAAAAGCTTTTAATCATTGAAAATAAAATAGGACAATCGGCTTCGGCATTTGTGGGAATACTTCCATTATGGATTGATTCTACATTTTCTAGTTTCGGTGACTTTGCCATGTTTTGTATGCTACATAAATTTGGGATAGCTCGATGTTTGGAGGAGTTCTCTGAAATGCTTTCAACTTGTAGATATGACCATCTTACTAACAGAGGTATAAATGATCACTTTAGTAGACTTGGTCGTGCTTCACTTATCTTAACTTTCCAATTGTTTCCACCTGATCAATTCGGATTAGCGTTTCCATTTGATCCTGGCTCTCGCTCACTTACGATGTTCCTTAGAGTTATGAGAAACTATGTATTTTGTGTCG</gDNA_template>
            <first_frame> N  T  I  P  N  L  P  S  P  Q  S  W  N  A  H  Q  V  S  N  E  K  S  N  K  T  S  D  I  V  V  D  V  E  N  V  I  V  L  I  K  S  G  S  A  E  M  L  V  T  Q  A  K  E  K  I  F  H  S  I  S  D  E  T  K  E  E  V  E  F  H  V  S  Q  H  I  S  E  P  L  I  Y  N  N  N  E  A  H  K  M  F  V  *  K  M  K  I  I  F  N  F  L  E  V  Q  K  I  F  *  I  Y  S  R  T  F  *  N  L  V  E  *  I  S  L  I  F  I  V  K  K  N  L  L  L  Y  I  I  R  Y  L  *  *  S  I  E  *  F  R  F  L  L  N  N  *  K  I  R  L  S  K  F  F  L  *  I  F  L  E  *  F  L  E  V  S  L  Y  *  Y  K  *  G  W  S  *  S  F  V  I  N  P  N  Q  I  V  Y  Q  N  S  L  I  Q  N  I  S  S  P  F  *  F  P  L  F  S  *  I  F  R  S  Y  L  T  I  L  S  *  E  K  I  Y  *  L  Y  F  S  S  A  I  L  Y  S  L  M  D  I  L  *  D  V  R  M  L  F  *  N  H  T  R  C  L  *  L  P  Q  I  L  L  R  K  M  T  M  L  L  M  L  I  M  K  T  G  L  R  K  K  K  K  K  S  F  *  S  L  K  I  K  *  D  N  R  L  R  H  L  W  E  Y  F  H  Y  G  L  I  L  H  F  L  V  S  V  T  L  P  C  F  V  C  Y  I  N  L  G  *  L  D  V  W  R  S  S  L  K  C  F  Q  L  V  D  M  T  I  L  L  T  E  V  *  M  I  T  L  V  D  L  V  V  L  H  L  S  *  L  S  N  C  F  H  L  I  N  S  D  *  R  F  H  L  I  L  A  L  A  H  L  R  C  S  L  E  L  *  E  T  M  Y  F  V  S </first_frame>
            <second_frame>  T  L  S  L  T  C  P  R  L  S  R  G  M  R  T  R  C  P  M  K  S  Q  I  R  L  L  I  L  L  *  M  L  R  M  *  *  C  *  S  K  V  A  V  L  K  C  W  L  L  K  Q  K  R  R  F  F  I  R  F  R  M  K  P  K  R  R  W  S  S  M  F  H  N  T  L  V  N  H  L  Y  T  T  T  M  R  H  T  R  C  L  C  E  K  *  R  *  F  L  I  F  W  R  Y  K  K  Y  F  R  Y  I  V  E  L  S  R  I  W  *  N  K  Y  L  *  Y  L  *  L  R  K  I  Y  C  S  T  *  L  D  I  Y  S  K  V  *  N  N  L  D  S  C  *  I  I  R  R  *  G  Y  L  N  F  S  C  R  S  F  *  N  N  F  *  K  Y  L  Y  T  S  I  N  R  G  G  H  S  H  L  *  S  T  Q  T  K  *  S  I  K  I  L  L  F  K  I  F  L  H  L  S  S  F  L  F  L  V  E  S  S  D  L  I  *  R  S  *  A  R  R  R  F  T  D  Y  T  F  L  L  L  F  S  T  V  *  W  I  F  F  R  M  *  G  C  Y  S  R  I  T  Q  G  A  Y  D  Y  H  R  Y  Y  *  G  K  *  L  C  Y  *  C  *  *  *  R  Q  D  *  G  R  R  R  R  K  A  F  N  H  *  K  *  N  R  T  I  G  F  G  I  C  G  N  T  S  I  M  D  *  F  Y  I  F  *  F  R  *  L  C  H  V  L  Y  A  T  *  I  W  D  S  S  M  F  G  G  V  L  *  N  A  F  N  L  *  I  *  P  S  Y  *  Q  R  Y  K  *  S  L  *  *  T  W  S  C  F  T  Y  L  N  F  P  I  V  S  T  *  S  I  R  I  S  V  S  I  *  S  W  L  S  L  T  Y  D  V  P  *  S  Y  E  K  L  C  I  L  C   </second_frame>
            <third_frame>   H  Y  P  *  L  A  L  A  S  V  V  E  C  A  P  G  V  Q  *  K  V  K  *  D  F  *  Y  C  C  R  C  *  E  C  N  S  A  N  Q  K  W  Q  C  *  N  V  G  Y  S  S  K  R  E  D  F  S  F  D  F  G  *  N  Q  R  G  G  G  V  P  C  F  T  T  H  *  *  T  T  Y  I  Q  Q  Q  *  G  T  Q  D  V  C  V  K  N  E  D  N  F  *  F  F  G  G  T  K  N  I  L  D  I  *  *  N  F  L  E  F  G  R  I  N  I  F  N  I  Y  S  *  E  K  S  I  A  L  H  N  *  I  F  I  V  K  Y  R  I  I  *  I  L  V  K  *  L  E  D  K  V  I  *  I  F  L  V  D  L  S  R  I  I  F  R  S  I  S  I  L  V  *  I  G  V  V  I  V  I  C  N  Q  P  K  P  N  S  L  S  K  F  S  Y  S  K  Y  F  F  T  F  L  V  S  S  F  *  L  N  L  P  I  L  F  N  D  L  E  L  G  E  D  L  L  I  I  L  F  F  C  Y  S  L  Q  F  D  G  Y  S  L  G  C  K  D  V  I  L  E  S  H  K  V  L  M  I  T  T  D  T  I  E  E  N  D  Y  A  I  D  V  D  N  E  D  R  T  E  E  E  E  E  E  K  L  L  I  I  E  N  K  I  G  Q  S  A  S  A  F  V  G  I  L  P  L  W  I  D  S  T  F  S  S  F  G  D  F  A  M  F  C  M  L  H  K  F  G  I  A  R  C  L  E  E  F  S  E  M  L  S  T  C  R  Y  D  H  L  T  N  R  G  I  N  D  H  F  S  R  L  G  R  A  S  L  I  L  T  F  Q  L  F  P  P  D  Q  F  G  L  A  F  P  F  D  P  G  S  R  S  L  T  M  F  L  R  V  M  R  N  Y  V  F  C  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50435" stop="49854"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>582</number_coding_nucleotides>
                  <number_encoded_amino_acids>194</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLPILFNDLELGEDLLIILFFCYSLQFDGYSLGCKDVILESHKVLMITTDTIEENDYAIDVDNEDRTEEEEEEKLLIIENKIGQSASAFVGILPLWIDSTFSSFGDFAMFCMLHKFGIARCLEEFSEMLSTCRYDHLTNRGINDHFSRLGRASLILTFQLFPPDQFGLAFPFDPGSRSLTMFLRVMRNYVFCV</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51070" stop="50795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NTIPNLPSPQSWNAHQVSNEKSNKTSDIVVDVENVIVLIKSGSAEMLVTQAKEKIFHSISDETKEEVEFHVSQHISEPLIYNNNEAHKMFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="61359" PGL_stop="62508"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61359" e_stop="61917"/>
            <exon e_start="62267" e_stop="62508"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.919"/>
          <exon-only e_score="0.954"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="61359" e_stop="61917" e_length="559"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="61918" i_stop="62266" i_length="349"/>
          </intron>
          <exon e_serial="2" e_score="0.954">
            <gDNA_exon_boundary e_start="62267" e_stop="62508" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61359" stop="61917"/>
              <exon start="62267" stop="62426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61359" stop="61760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62271" stop="62508"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATCAAGCATGATGAAGTGATTGAATCTCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATGGAAGGAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTATGGGATCGGGTGTGACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGGACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACATAGATTTAGGGGATCGG : GGTGTCACGAACCGACACGTAGATTTAGGGGATCGAAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATAAATCTTGAAAGATGTTTATATACTCAATCTAATGAACATGATTACCAAATGAGTATGGTATCGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTT</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  G  S  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  S  S  M  M  K  *  L  N  L  K  S  *  *  K  P  N  L  F  L  M  M  M  P  W  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  W  K  E  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  M  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  P  T  H  R  F  R  G  S   : G  C  H  E  P  T  R  R  F  R  G  S  K  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  I  N  L  E  R  C  L  Y  T  Q  S  N  E  H  D  Y  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  V  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  Q  A  *  *  S  D  *  I  S  N  L  D  K  N  L  I  S  F  *  *  *  C  L  G  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  G  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  L  T  R  R  I  R  G  S  G  V  T  N  R  H  V  E  L  W  D  R  V  *  R  T  D  T  *  I  *  G  I  G  C  H  G  P  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  R  :  G  V  T  N  R  H  V  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  Y  I  L  N  L  M  N  M  I  T  K  *  V  W  Y  R  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  W  *  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  M  E  G  E  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  *  H  V  E  L  G  D  R  V  S  R  T  D  T  *  N  Y  G  I  G  C  D  E  P  T  R  R  F  R  G  S  G  V  T  D  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G :   V  S  R  T  D  T  *  I  *  G  I  E  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  K  S  *  K  M  F  I  Y  S  I  *  *  T  *  L  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="62657" PGL_stop="63372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62657" e_stop="63372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="62657" e_stop="63372" e_length="716"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62657" stop="63372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392027" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGTCAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGCTTTTAGAATACTCTTAGTTAGTCGTTTGATCGTAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGTCTTTTATTTAATGAGTTTAAGTCTTCCGCATTACTTTCTGTTGATATTATATTGAAATGTTAAGGTTAGATTGGTTGGTTCGCTCACATAGGAGGGTAAGTGTGGGTGCCAGTCGCAACCCGGTTTGGGTCGTGACAAACTTGATATCAGAGCATTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTATGGAACGGTAGGGGGACGCCTTTACTTTTATTTGAGAGGCTATAAGACTTTAGGAAAATTTCATTCTTTCTTTCTTTCTTTCGTGCTACTACTTGAATCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCAGCACCGGCGGGACAGGGTGCGTCTGAGCAAGCTACTGGGGCTGTTG</gDNA_template>
            <first_frame> Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G  L  D  L  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  L  L  E  Y  S  *  L  V  V  *  S  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  M  L  N  F  R  S  *  *  I  G  L  L  F  N  E  F  K  S  S  A  L  L  S  V  D  I  I  L  K  C  *  G  *  I  G  W  F  A  H  I  G  G  *  V  W  V  P  V  A  T  R  F  G  S  *  Q  T  *  Y  Q  S  I  R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  M  E  R  *  G  D  A  F  T  F  I  *  E  A  I  R  L  *  E  N  F  I  L  S  F  F  L  S  C  Y  Y  L  N  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  S  T  G  G  T  G  C  V  *  A  S  Y  W  G  C   </first_frame>
            <second_frame>  S  K  R  A  V  I  F  D  S  T  V  T  L  V  S  L  R  H  I  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  *  N  T  L  S  *  S  F  D  R  R  C  S  C  D  D  D  F  Q  I  L  G  N  N  R  C  *  I  L  E  V  N  E  L  V  F  Y  L  M  S  L  S  L  P  H  Y  F  L  L  I  L  Y  *  N  V  K  V  R  L  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  L  G  R  D  K  L  D  I  R  A  L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  W  N  G  R  G  T  P  L  L  L  F  E  R  L  *  D  F  R  K  I  S  F  F  L  S  F  F  R  A  T  T  *  I  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  P  A  G  Q  G  A  S  E  Q  A  T  G  A  V  </second_frame>
            <third_frame>   A  N  V  P  S  S  S  T  Q  Q  *  L  *  S  V  F  V  T  S  D  L  Q  G  E  L  M  L  L  A  W  T  G  S  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  A  F  R  I  L  L  V  S  R  L  I  V  D  V  L  V  M  M  T  S  R  F  W  G  I  I  D  V  E  F  *  K  L  M  N  W  S  F  I  *  *  V  *  V  F  R  I  T  F  C  *  Y  Y  I  E  M  L  R  L  D  W  L  V  R  S  H  R  R  V  S  V  G  A  S  R  N  P  V  W  V  V  T  N  L  I  S  E  H  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  Y  G  T  V  G  G  R  L  Y  F  Y  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  Q  H  R  R  D  R  V  R  L  S  K  L  L  G  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63085" stop="63372"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VRWSHHTRTSLVESYGTVGGRLYFYLRGYKTLGKFHSFFLSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHQHRRDRVRLSKLLGLL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="62698" stop="62910"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVFVTSDLQGELMLLAWTGSSSSSLDALNFRHGLASYVFLAFRILLVSRLIVDVLVMMTSRFWGIIDVEF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="63811" PGL_stop="63379"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63811" e_stop="63379"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="63811" e_stop="63379" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63811" stop="63379"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAATGTGCCTATGTCCAATGAGGCATCCATACGAGGAGCCATAGTGGCTGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGACAACCCACTGAGATAGGCGAGAACCTGATTGATCATCTCTAGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCCCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCTCTTGCCGCTGCTCTTC</gDNA_template>
            <first_frame> P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  M  S  N  E  A  S  I  R  G  A  I  V  A  A  C  C  T  S  E  T  G  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  R  V  G  W  G  G  N  P  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  A  L  </first_frame>
            <second_frame>  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  M  C  L  C  P  M  R  H  P  Y  E  E  P  *  W  L  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  T  T  H  *  D  R  R  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  E  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  P  *  R  T  S  S  H  D  L  Y  H  G  L  L  P  L  L  F </second_frame>
            <third_frame>   L  E  D  R  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  C  A  Y  V  Q  *  G  I  H  T  R  S  H  S  G  C  M  L  Y  F  *  N  R  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  Q  P  T  E  I  G  E  N  L  I  D  H  L  *  G  R  L  G  W  Q  S  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  R  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  P  R  G  R  P  P  T  T  S  T  T  A  S  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63577" stop="63380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISRVGWGGNPSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="65568" PGL_stop="64270"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65568" e_stop="64270"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="65568" e_stop="64270" e_length="1299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65568" stop="64910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65096" stop="64766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64889" stop="64331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64803" stop="64270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTATTCAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTTAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATTGAAATGGGGCGAGTACCCGATTCAAGGTCAATACAAAAATCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACCACCGAAACCGACTTAATCGAAGGCACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAGGGAGATGATACGCACCGGATTGGAAGTGTAGTCGCCCTCCCAAACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAGTCCAAAATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCATCCATTTCTAAGATCTCCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATACACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGATAGCATCAGATGCCTCCGCTTCAGATCGCCCAGGGAAAGTGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCTCAACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCCATTGGGGGTCTATAACTCTGTTTTGGACAATTCCTCCTAATATGTCCAGTTTCCCCACATCCATAACACTATCTGGAGTCAAGCATAGGTCTCTTAGAGAAGTGTTGACCAGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGACCTGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTTGAAACCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTCCACTCCTTCA</gDNA_template>
            <first_frame> S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  D  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  L  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  R  E  M  I  R  T  G  L  E  V  *  S  P  S  Q  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  S  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  I  A  S  D  A  S  A  S  D  R  P  G  K  V  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  Q  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  F  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  Y  L  E  S  S  I  G  L  L  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  S  E  D  *  M  G  R  P  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  *  N  L  F  D  V  D  A  M  V  N  S  S  G  S  T  P  S </first_frame>
            <second_frame>  Q  C  E  E  E  D  T  C  S  *  *  L  P  Y  S  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  L  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  L  K  W  G  E  Y  P  I  Q  G  Q  Y  K  N  Q  Y  P  Y  L  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  P  P  K  P  T  *  S  K  A  L  G  *  C  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  G  R  *  Y  A  P  D  W  K  C  S  R  P  P  K  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  S  P  K  S  Q  I  A  E  K  A  K  S  Y  P  E  L  H  Q  N  H  P  F  L  R  S  P  N  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  T  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  *  H  Q  M  P  P  L  Q  I  A  Q  G  K  C  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  D  H  H  Y  L  N  H  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  P  L  G  V  Y  N  S  V  L  D  N  S  S  *  Y  V  Q  F  P  H  I  H  N  T  I  W  S  Q  A  *  V  S  *  R  S  V  D  Q  S  E  V  D  P  Q  L  Q  S  V  V  K  T  E  W  V  D  L  S  N  L  R  N  L  V  L  *  S  K  N  H  *  T  H  L  P  F  E  T  S  L  M  S  M  P  W  *  I  H  L  A  P  L  L   </second_frame>
            <third_frame>   N  A  R  K  R  I  L  V  L  N  S  Y  L  I  Q  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  *  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  *  N  G  A  S  T  R  F  K  V  N  T  K  I  N  I  P  I  W  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  H  R  N  R  L  N  R  R  H  L  G  S  V  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  R  I  G  S  V  V  A  L  P  N  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  V  Q  N  R  K  L  R  R  K  P  S  H  T  Q  N  Y  I  K  I  I  H  F  *  D  L  Q  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  S  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  A  S  T  M  T  T  S  T  S  S  H  W  G  S  I  T  L  F  W  T  I  P  P  N  M  S  S  F  P  T  S  I  T  L  S  G  V  K  H  R  S  L  R  E  V  L  T  S  L  R  W  T  P  N  Y  S  L  *  *  R  L  N  G  S  T  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  L  K  P  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64657" stop="64403"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRMTASTMTTSTSSHWGSITLFWTIPPNMSSFPTSITLSGVKHRSLREVLTSLRWTPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65361" stop="65116"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPDSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDLIEGTWVVSSLRCAKKAKHPLLTIFLARRREMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65429" stop="65232"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCLTTLEVGLLTLLTPREPFYKGVLKWGEYPIQGQYKNQYPYLVAYQEDLQGTHPETHEPPKPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="67569" PGL_stop="67393"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67569" e_stop="67393"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="67569" e_stop="67393" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67569" stop="67393"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTCCCATACAATGCTTCAAATGGGGCCATATCAATACTTGAGTGATAGCTATTACTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGGACACCAAACTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTCCTTTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  I  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  R  K  L  S  Q  W  T  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  S  H  T  M  L  Q  M  G  P  Y  Q  Y  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  G  S  Y  P  N  G  H  Q  T  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  S  F  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  P  I  Q  C  F  K  W  G  H  I  N  T  *  V  I  A  I  T  V  *  K  L  R  *  G  *  E  A  I  P  M  D  T  K  L  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  P  F  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="70048" PGL_stop="69712"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70048" e_stop="69712"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="70048" e_stop="69712" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70048" stop="69712"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGCCAACTCAAAATAGAAATCAATATATACCAAGTAATATCATAAAATCAACTATGATACTTAACATGTAGCAACAACAAATACTATATCATTAACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTTGATACCATACTCATTTGGTAATCATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTTCGCTCCCTCATATTCATTAATCCTCTTGTGTTGGTACGTGACACTCCGATCCCCTAAATCTACGTGTCGGTTCGTGACACCCTATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  A  N  S  K  *  K  S  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  *  H  V  A  T  T  N  T  I  S  L  T  I  T  V  K  F  T  H  E  D  S  S  L  D  T  I  L  I  W  *  S  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  S  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  R  V  G  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  P  T  Q  N  R  N  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  I  L  Y  H  *  Q  L  P  S  S  S  H  M  R  T  Q  A  L  I  P  Y  S  F  G  N  H  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  L  V  R  D  T  P  I  P  *  I  Y  V  S  V  R  D  T  L  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  K  I  E  I  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  L  T  C  S  N  N  K  Y  Y  I  I  N  N  Y  R  Q  V  H  T  *  G  L  K  P  *  Y  H  T  H  L  V  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  F  A  P  S  Y  S  L  I  L  L  C  W  Y  V  T  L  R  S  P  K  S  T  C  R  F  V  T  P  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="69722" PGL_stop="70202"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69722" e_stop="70202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="69722" e_stop="70202" e_length="481"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69722" stop="69959"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69723" stop="70202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTACCAACACAAGAGGATTAATGAATATGAGGGAGCGAAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTACCAAATGAGTATGGTATCAAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTAAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCTAGCTAGTCTTCGTCACATCGGATCTTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  I  *  G  I  G  V  S  R  T  N  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  L  P  N  E  Y  G  I  K  A  *  V  L  M  C  E  L  D  G  N  C  *  *  Y  S  I  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  L  A  S  L  R  H  I  G  S  S  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  H  E  P  T  R  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  E  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  D  Y  Q  M  S  M  V  S  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  *  L  V  F  V  T  S  D  L  Q  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   T  N  R  H  V  D  L  G  D  R  S  V  T  Y  Q  H  K  R  I  N  E  Y  E  G  A  K  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  M  I  T  K  *  V  W  Y  Q  G  L  S  P  H  V  *  T  *  R  *  L  L  M  I  *  Y  L  L  L  L  H  V  K  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  *  S  S  S  H  R  I  F  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="77271" PGL_stop="76941"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77271" e_stop="76941"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="77271" e_stop="76941" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77271" stop="76941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239290" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCCTTCTTTTTCGTATTTCGGAGGTTCTTAAAGGTTCAAGTTGCCTTATCAAAGTTCAAGTTGCCTTATCAAACCTTCCACTTTTAAAACTGACGGATAGATCTCAAGACCAAGATTCGAAGCAGAGCTGGAGTCAGAATTTGGACCAAAGAGCTCAATTTTTTTTTCTTTCTTTTTTTCTTTTGGCATTGTATTTGGGCATAAGCCCTTGTTGTCTTTATCTTTCCCTTTATTATTTATTGTATTACTTGACTAGAATTTAGGACACGTACAATAATCAAAATAGGTCAACAAAACCCAAAACAAATGGGTCCAAAAATTCGGTCAAG</gDNA_template>
            <first_frame> S  P  S  F  S  Y  F  G  G  S  *  R  F  K  L  P  Y  Q  S  S  S  C  L  I  K  P  S  T  F  K  T  D  G  *  I  S  R  P  R  F  E  A  E  L  E  S  E  F  G  P  K  S  S  I  F  F  S  F  F  F  S  F  G  I  V  F  G  H  K  P  L  L  S  L  S  F  P  L  L  F  I  V  L  L  D  *  N  L  G  H  V  Q  *  S  K  *  V  N  K  T  Q  N  K  W  V  Q  K  F  G  Q  </first_frame>
            <second_frame>  L  L  L  F  R  I  S  E  V  L  K  G  S  S  C  L  I  K  V  Q  V  A  L  S  N  L  P  L  L  K  L  T  D  R  S  Q  D  Q  D  S  K  Q  S  W  S  Q  N  L  D  Q  R  A  Q  F  F  F  L  S  F  F  L  L  A  L  Y  L  G  I  S  P  C  C  L  Y  L  S  L  Y  Y  L  L  Y  Y  L  T  R  I  *  D  T  Y  N  N  Q  N  R  S  T  K  P  K  T  N  G  S  K  N  S  V  K </second_frame>
            <third_frame>   S  F  F  F  V  F  R  R  F  L  K  V  Q  V  A  L  S  K  F  K  L  P  Y  Q  T  F  H  F  *  N  *  R  I  D  L  K  T  K  I  R  S  R  A  G  V  R  I  W  T  K  E  L  N  F  F  F  F  L  F  F  F  W  H  C  I  W  A  *  A  L  V  V  F  I  F  P  F  I  I  Y  C  I  T  *  L  E  F  R  T  R  T  I  I  K  I  G  Q  Q  N  P  K  Q  M  G  P  K  I  R  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77270" stop="77007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLLFRISEVLKGSSCLIKVQVALSNLPLLKLTDRSQDQDSKQSWSQNLDQRAQFFFLSFFLLALYLGISPCCLYLSLYYLLYYLTRI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="112927" PGL_stop="112554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112927" e_stop="112554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="112927" e_stop="112554" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112927" stop="112554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCGTTCCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGAAGGACCGTCATAGCCACGACGGAACGTCATAAGCTTCGTAATCACACACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGCCACCTACGGACCATCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCAATTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCTAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATTAATAATATTGTGAAACCACG</gDNA_template>
            <first_frame> V  V  P  K  Y  F  N  S  W  N  L  G  T  G  I  T  S  L  N  F  T  T  N  L  Q  E  G  P  S  *  P  R  R  N  V  I  S  F  V  I  T  H  L  V  R  L  P  H  L  P  S  A  A  A  L  R  C  H  L  R  T  I  T  S  T  T  D  R  H  K  L  R  R  W  S  L  L  Q  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  L  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  I  V  K  P   </first_frame>
            <second_frame>  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  S  L  L  *  T  S  R  R  T  C  R  K  D  R  H  S  H  D  G  T  S  *  A  S  *  S  H  T  W  S  D  F  P  I  F  L  Q  Q  L  H  Y  A  A  T  Y  G  P  S  Q  A  R  R  T  V  I  S  S  V  G  G  L  F  C  N  S  S  L  K  I  S  A  F  S  F  G  Q  I  S  C  *  T  K  R  N  L  Y  K  N  *  H  K  K  A  F  G  H  T  K  L  K  E  K  V  L  I  I  L  *  N  H  </second_frame>
            <third_frame>   R  S  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  E  L  H  D  E  P  A  G  R  T  V  I  A  T  T  E  R  H  K  L  R  N  H  T  L  G  Q  T  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  H  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  I  L  R  S  K  S  P  H  S  A  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  L  D  T  L  N  L  R  K  K  Y  *  *  Y  C  E  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112837" stop="112625"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRRNVISFVITHLVRLPHLPSAAALRCHLRTITSTTDRHKLRRWSLLQFFAQNLRIQLWTDFLLNKEKLI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112925" stop="112719"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSKILQLLESGYWDHFSELHDEPAGRTVIATTERHKLRNHTLGQTSPSSFSSCTTLPPTDHHKHDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="115144" PGL_stop="114555"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115144" e_stop="114555"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="115144" e_stop="114555" e_length="590"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115144" stop="114555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351864" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTGCGAAGGTGTTTCTCCCTGTATCAGACTTCCTAGTAATCCAAGCTTTGTTATTCCGGGAGATTTTCTCTAGTTTTTCAGCGATCTCAGCATAAGGGCATTCTCTATAAGATCCACCTGCTATAGTGTCCAACACCGCTTTGTTGTTATCACCCTGTCCCCGATAGAAGTATTCCTTCAGTGAATAATCATCTATATGGTGATTTTGAACACTTCTATAGAATGAGGTGAATCTATCCCAAGAACTACTAACTGACTCTCCTGGTAGTGCCACAAAGTTGTTCACTCTGTCTTTGTGGTTTAGTTTCTTGGAGACTGGATAGTAGCGTGCTAAGAAAACATCTCTTAATTTGTTCCAAGTGAAGATTGAGTTGTATGGGAGCTCAGTGAACCATATAGCAGCCTCTCCAGTCAGTGAGAGAGGAAACACTCTGAGACCTATTACATCTAGATCCAAATCACGCCTCCCCACACAACTTTTACAAACTGCCCTTACCTTAGCTATATAGGCATGTGGATCCTCAGAAGGTAGCCCTGAGAACAAACCTCTGGCAGTGAGCATTTGCATCAGGCTACTAGTTACCACAAA</gDNA_template>
            <first_frame> T  A  K  V  F  L  P  V  S  D  F  L  V  I  Q  A  L  L  F  R  E  I  F  S  S  F  S  A  I  S  A  *  G  H  S  L  *  D  P  P  A  I  V  S  N  T  A  L  L  L  S  P  C  P  R  *  K  Y  S  F  S  E  *  S  S  I  W  *  F  *  T  L  L  *  N  E  V  N  L  S  Q  E  L  L  T  D  S  P  G  S  A  T  K  L  F  T  L  S  L  W  F  S  F  L  E  T  G  *  *  R  A  K  K  T  S  L  N  L  F  Q  V  K  I  E  L  Y  G  S  S  V  N  H  I  A  A  S  P  V  S  E  R  G  N  T  L  R  P  I  T  S  R  S  K  S  R  L  P  T  Q  L  L  Q  T  A  L  T  L  A  I  *  A  C  G  S  S  E  G  S  P  E  N  K  P  L  A  V  S  I  C  I  R  L  L  V  T  T   </first_frame>
            <second_frame>  L  R  R  C  F  S  L  Y  Q  T  S  *  *  S  K  L  C  Y  S  G  R  F  S  L  V  F  Q  R  S  Q  H  K  G  I  L  Y  K  I  H  L  L  *  C  P  T  P  L  C  C  Y  H  P  V  P  D  R  S  I  P  S  V  N  N  H  L  Y  G  D  F  E  H  F  Y  R  M  R  *  I  Y  P  K  N  Y  *  L  T  L  L  V  V  P  Q  S  C  S  L  C  L  C  G  L  V  S  W  R  L  D  S  S  V  L  R  K  H  L  L  I  C  S  K  *  R  L  S  C  M  G  A  Q  *  T  I  *  Q  P  L  Q  S  V  R  E  E  T  L  *  D  L  L  H  L  D  P  N  H  A  S  P  H  N  F  Y  K  L  P  L  P  *  L  Y  R  H  V  D  P  Q  K  V  A  L  R  T  N  L  W  Q  *  A  F  A  S  G  Y  *  L  P  Q  </second_frame>
            <third_frame>   C  E  G  V  S  P  C  I  R  L  P  S  N  P  S  F  V  I  P  G  D  F  L  *  F  F  S  D  L  S  I  R  A  F  S  I  R  S  T  C  Y  S  V  Q  H  R  F  V  V  I  T  L  S  P  I  E  V  F  L  Q  *  I  I  I  Y  M  V  I  L  N  T  S  I  E  *  G  E  S  I  P  R  T  T  N  *  L  S  W  *  C  H  K  V  V  H  S  V  F  V  V  *  F  L  G  D  W  I  V  A  C  *  E  N  I  S  *  F  V  P  S  E  D  *  V  V  W  E  L  S  E  P  Y  S  S  L  S  S  Q  *  E  R  K  H  S  E  T  Y  Y  I  *  I  Q  I  T  P  P  H  T  T  F  T  N  C  P  Y  L  S  Y  I  G  M  W  I  L  R  R  *  P  *  E  Q  T  S  G  S  E  H  L  H  Q  A  T  S  Y  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0107N23.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="120119" PGL_stop="120911"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120119" e_stop="120911"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="120119" e_stop="120911" e_length="793"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120119" stop="120853"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120119" stop="120778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120119" stop="120703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120626" stop="120911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGGCCGATGATATCTATTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTTTTCTTCCTGTTATTTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTCAACAGTAACTCAAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTCCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTTAGCTTCTTAGAAACTCTTAGAATTAGTAGTTTAAAGTAGATGTTCTTGTGATGATGACTTCCAGGTTTTGGGAATAATAGATGTTGAATTTTAGAAGTTAATGAATTGGCCTTTATTTTATGAGTTTAAGTCTTCCGCATTACTTTCTAGTTAAATTATATTGAAACGTTAAGGTTTAGATTTGTTGGTTCGCTCACATAGGAGGGAAAGTGTGGGTGCCAGTCGCAGCCCGGATTCGGGTCGTGACAAACTTGGTATCAGAGCCATAGGTTCGTTGGTCTAATCACACAAGAACAGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACATCAACAGCGGCCAGACAAGAAACCACTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  V  F  L  P  V  I  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  L  A  S  *  K  L  L  E  L  V  V  *  S  R  C  S  C  D  D  D  F  Q  V  L  G  I  I  D  V  E  F  *  K  L  M  N  W  P  L  F  Y  E  F  K  S  S  A  L  L  S  S  *  I  I  L  K  R  *  G  L  D  L  L  V  R  S  H  R  R  E  S  V  G  A  S  R  S  P  D  S  G  R  D  K  L  G  I  R  A  I  G  S  L  V  *  S  H  K  N  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  S  T  A  A  R  Q  E  T  T  E  P  A  T  G  A  V  </first_frame>
            <second_frame>  W  P  M  I  S  I  Q  Y  P  C  F  V  L  T  P  T  F  M  F  F  F  L  L  F  V  E  C  S  K  R  A  V  I  F  D  S  T  V  T  Q  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  W  I  F  S  F  M  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  *  L  L  R  N  S  *  N  *  *  F  K  V  D  V  L  V  M  M  T  S  R  F  W  E  *  *  M  L  N  F  R  S  *  *  I  G  L  Y  F  M  S  L  S  L  P  H  Y  F  L  V  K  L  Y  *  N  V  K  V  *  I  C  W  F  A  H  I  G  G  K  V  W  V  P  V  A  A  R  I  R  V  V  T  N  L  V  S  E  P  *  V  R  W  S  N  H  T  R  T  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  Q  R  P  D  K  K  P  L  S  Q  P  L  G  L  W </second_frame>
            <third_frame>   G  R  *  Y  L  F  S  T  R  V  L  Y  *  P  L  L  L  C  F  S  S  C  Y  L  W  S  A  A  N  V  P  S  S  S  T  Q  Q  *  L  K  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  L  A  W  T  G  S  S  P  S  C  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  F  S  F  L  E  T  L  R  I  S  S  L  K  *  M  F  L  *  *  *  L  P  G  F  G  N  N  R  C  *  I  L  E  V  N  E  L  A  F  I  L  *  V  *  V  F  R  I  T  F  *  L  N  Y  I  E  T  L  R  F  R  F  V  G  S  L  T  *  E  G  K  C  G  C  Q  S  Q  P  G  F  G  S  *  Q  T  W  Y  Q  S  H  R  F  V  G  L  I  T  Q  E  Q  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  I  N  S  G  Q  T  R  N  H  *  A  S  H  W  G  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120675" stop="120911"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQQRPDKKPLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="120984" PGL_stop="121537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120984" e_stop="121537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="120984" e_stop="121537" e_length="554"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120984" stop="121537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAGCCCATGTGATACTAGGGTAGTGACTCCTCCACCGACTAAGGAGGTAATAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTGCAGAATGAGGGATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTGGCTTATCTTAGCGGGTTATCTGATCAGGGCCAGACACCCCCAGTGTTTTCTGCACCAGCACCTCAGGCTTCGGAGGTACAACATGCGGCTACTATGGCTCCCCGCGTGGATGTTCCATTGGAAATAGGCACGTTTCCACGTCTGACTACTGGGCCTATAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCGGAATCTGAGGATGCTTACGATTTTCTGGTTGACTGTCACGAGCTACTACACAAAATGGGTATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATATCGAGTGTCAACCAATAGAGGCACCACCTATGACTTGGGCCTCATTCT</gDNA_template>
            <first_frame> T  *  P  M  *  Y  *  G  S  D  S  S  T  D  *  G  G  N  K  R  R  G  G  W  G  K  *  T  S  A  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  G  L  S  *  R  V  I  *  S  G  P  D  T  P  S  V  F  C  T  S  T  S  G  F  G  G  T  T  C  G  Y  Y  G  S  P  R  G  C  S  I  G  N  R  H  V  S  T  S  D  Y  W  A  Y  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  G  I  *  G  C  L  R  F  S  G  *  L  S  R  A  T  T  Q  N  G  Y  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  Y  R  V  S  T  N  R  G  T  T  Y  D  L  G  L  I   </first_frame>
            <second_frame>  P  S  P  C  D  T  R  V  V  T  P  P  P  T  K  E  V  I  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  G  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  T  P  P  V  F  S  A  P  A  P  Q  A  S  E  V  Q  H  A  A  T  M  A  P  R  V  D  V  P  L  E  I  G  T  F  P  R  L  T  T  G  P  I  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  S  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  M  G  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  I  E  C  Q  P  I  E  A  P  P  M  T  W  A  S  F  </second_frame>
            <third_frame>   L  A  H  V  I  L  G  *  *  L  L  H  R  L  R  R  *  *  E  K  G  R  M  G  K  M  N  K  C  R  M  R  D  C  H  P  N  L  P  Q  R  *  S  I  R  F  W  L  I  L  A  G  Y  L  I  R  A  R  H  P  Q  C  F  L  H  Q  H  L  R  L  R  R  Y  N  M  R  L  L  W  L  P  A  W  M  F  H  W  K  *  A  R  F  H  V  *  L  L  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  R  N  L  R  M  L  T  I  F  W  L  T  V  T  S  Y  Y  T  K  W  V  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  I  S  S  V  N  Q  *  R  H  H  L  *  L  G  P  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120985" stop="121536"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSPCDTRVVTPPPTKEVIREGEDGENEQVQNEGLPPQPTPEMINQVLAYLSGLSDQGQTPPVFSAPAPQASEVQHAATMAPRVDVPLEIGTFPRLTTGPIMTNDQHELFSKFLKLKPPVFKGAESEDAYDFLVDCHELLHKMGIVERFGVEFVTYQFQGNAKMWWRSHIECQPIEAPPMTWASF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="123627" PGL_stop="120988"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="123627" e_stop="120988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="123627" e_stop="120988" e_length="2640"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123627" stop="122915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123627" stop="123032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123627" stop="123102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123556" stop="122877"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123556" stop="123198"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123038" stop="122277"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="123038" stop="122378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122424" stop="121661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122344" stop="121555"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="122268" stop="121571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121707" stop="120988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121704" stop="121041"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACAAATCGACGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTTGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACTAGTATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCGTTCATCAAGTTCATGAACGCAGCAGGGGCATTCGTTAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCTTTGCCCATATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGGGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTTAGTTGTCTGTAGTCTATACACATTCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCTTTGTCCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCTAAGAAAGCTAAACACCCTTTACTAATAATTTTCTTAGCACAAAGAAAGGAGATGATGCGGACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCATTTTAGCATTACAATCCAAGATTGCAAATTGCGGAGAAAGCCAAGTCATACCTAGAATCACATCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAGGAAAACGTGGATCCAGGATCAAACAATACAGAAGTCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCACTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTTACCACCATTACCTCGACCACCACGTCCTCCAGAATGACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGAGACAGTTTTTCCTAATATGTCCAATCTCCCCACATCCATAACACTCTCTGGATTCAAGCATAAGCCTCTCGGAGAAGTGTTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTGTAGGGAAGACTGAATTGGTCGGACTGAGTAACTTCCCAAACCTTGTCCTCTAGTGTAAGAACCATTAAACTAACCCCCCTTTCGAAATCTCTTTGATGTCGATGCTGTGGTGAAGTAGTCTAGCTTCACTCCTTCCACATCTACCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCGCAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAACATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTAGAGAATGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATTTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCGTAAGCATCCTCAGATTCCGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCACGCGGGGAGCCATAGTAGCCGCATGTTGTACCTCCGAAGCCTGAGGTGCTGGTGCAGAAAACACTGGGGGTGTCTGGCCCTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATCCCTCATTCTGCACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTATTACCTCCTTAGTCGGTGGAGGAGTCACTACCCTAGTATCACATGGGCT</gDNA_template>
            <first_frame> E  S  L  D  K  S  T  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  W  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  *  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  P  V  H  Q  V  H  E  R  S  R  G  I  R  *  T  K  R  H  H  Y  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  L  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  G  K  R  I  L  V  L  Y  G  Y  L  V  *  L  S  V  V  Y  T  H  S  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  R  L  N  R  R  Y  L  G  S  V  I  L  E  M  C  *  E  S  *  T  P  F  T  N  N  F  L  S  T  K  K  G  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  H  F  S  I  T  I  Q  D  C  K  L  R  R  K  P  S  H  T  *  N  H  I  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  R  H  I  K  K  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  G  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  H  F  R  P  P  R  E  S  V  T  M  G  P  I  V  R  L  S  V  A  P  T  M  L  *  C  S  G  S  S  L  P  I  T  S  A  V  L  V  T  T  I  T  S  T  T  T  S  S  R  M  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  E  T  V  F  P  N  M  S  N  L  P  T  S  I  T  L  S  G  F  K  H  K  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  G  R  L  N  W  S  D  *  V  T  S  Q  T  L  S  S  S  V  R  T  I  K  L  T  P  L  S  K  S  L  *  C  R  C  C  G  E  V  V  *  L  H  S  F  H  I  Y  H  K  V  Y  H  F  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  R  K  P  A  N  P  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  K  L  S  L  I  N  I  N  R  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  T  R  E  *  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  T  H  F  V  *  *  L  V  T  V  N  Q  K  I  V  S  I  L  R  F  R  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  G  S  H  S  S  R  M  L  Y  L  R  S  L  R  C  W  C  R  K  H  W  G  C  L  A  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  Q  S  L  I  L  H  L  F  I  F  P  I  L  P  F  S  Y  Y  L  L  S  R  W  R  S  H  Y  P  S  I  T  W  A </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  S  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  F  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  F  A  H  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  F  M  V  T  L  F  S  C  L  *  S  I  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  S  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  K  E  M  M  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  I  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  R  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  V  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  T  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  L  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  R  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  D  S  S  I  S  L  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  C  R  E  D  *  I  G  R  T  E  *  L  P  K  P  C  P  L  V  *  E  P  L  N  *  P  P  F  R  N  L  F  D  V  D  A  V  V  K  *  S  S  F  T  P  S  T  S  T  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  A  N  R  R  I  R  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  R  N  L  A  S  *  T  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  T  R  G  A  I  V  A  A  C  C  T  S  E  A  *  G  A  G  A  E  N  T  G  G  V  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  P  S  F  C  T  C  S  F  S  P  S  S  P  S  L  I  T  S  L  V  G  G  G  V  T  T  L  V  S  H  G   </second_frame>
            <third_frame>   I  P  *  Q  I  D  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  L  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  L  V  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  L  D  Q  K  T  S  L  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  I  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  G  E  E  D  T  C  S  L  W  L  P  C  L  V  V  C  S  L  Y  T  F  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  P  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  P  T  Q  S  K  V  L  G  *  C  H  P  *  D  V  L  R  K  L  N  T  L  Y  *  *  F  S  *  H  K  E  R  R  *  C  G  P  D  W  K  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  L  Q  I  A  E  K  A  K  S  Y  L  E  S  H  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  K  H  E  *  A  Y  Q  E  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  R  K  T  W  I  Q  D  Q  T  I  Q  K  S  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  S  S  V  R  C  P  Y  H  V  V  M  *  W  L  Q  F  A  H  H  L  G  R  F  G  Y  H  H  Y  L  D  H  H  V  L  Q  N  D  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  *  D  S  F  S  *  Y  V  Q  S  P  H  I  H  N  T  L  W  I  Q  A  *  A  S  R  R  S  V  D  R  S  E  V  V  P  Q  L  Q  S  V  G  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  N  P  P  F  E  I  S  L  M  S  M  L  W  *  S  S  L  A  S  L  L  P  H  L  P  Q  S  L  P  L  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  E  T  *  P  H  K  H  *  P  T  S  Y  L  A  L  G  S  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  N  *  R  M  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  Y  P  F  C  V  V  A  R  D  S  Q  P  E  N  R  K  H  P  Q  I  P  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  R  G  E  P  *  *  P  H  V  V  P  P  K  P  E  V  L  V  Q  K  T  L  G  V  S  G  P  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  A  L  V  H  F  P  H  P  P  L  L  L  L  P  P  *  S  V  E  E  S  L  P  *  Y  H  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122196" stop="121942"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSSLPITSAVLVTTITSTTTSSRMTASTMTTSTSSYWGSITLSETVFPNMSNLPTSITLSGFKHKPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121395" stop="121141"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVTVNQKIVSILRFRTLEDWRFQFQELTEKFMLIICHYRPSSQTWKRAYFQWNIHAGSHSSRMLYLRSLRCWCRKHWGCLALIR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122900" stop="122655"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIEGTWVVSSLRCAKKAKHPLLIIFLAQRKEMMRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="123431" stop="123234"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTSISSINTITKRSKYGLKIPFIKFMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="121611" PGL_stop="123055"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121611" e_stop="121797"/>
            <exon e_start="122542" e_stop="123055"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.893"/>
          <exon-only e_score="0.920"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.893">
            <gDNA_exon_boundary e_start="121611" e_stop="121797" e_length="187"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="121798" i_stop="122541" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.920">
            <gDNA_exon_boundary e_start="122542" e_stop="123055" e_length="514"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121611" stop="121797"/>
              <exon start="122542" stop="123055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTTAATGTTTATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCGGATTCGCCGGTTTGCGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAAGTGGTAGACTTT : GATGTGATTCTAGGTATGACTTGGCTTTCTCCGCAATTTGCAATCTTGGATTGTAATGCTAAAATGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCGGTCCGCATCATCTCCTTTCTTTGTGCTAAGAAAATTATTAGTAAAGGGTGTTTAGCTTTCTTAGCACATCTCAAGGATGACACTACCCAAGTACCTTCGATTGAGTCGGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGGACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGAATGTGTATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  G  *  C  L  *  G  *  V  S  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R  S  G  R  L   : *  C  D  S  R  Y  D  L  A  F  S  A  I  C  N  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  F  Q  S  G  P  H  H  L  L  S  L  C  *  E  N  Y  *  *  R  V  F  S  F  L  S  T  S  Q  G  *  H  Y  P  S  T  F  D  *  V  G  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  G  Q  R  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  N  V  Y  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  V  Y  E  A  K  F  R  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  R  I  R  R  F  A  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q  E  V  V  D  F  :  D  V  I  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  M  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  C  A  K  K  I  I  S  K  G  C  L  A  F  L  A  H  L  K  D  D  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  D  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  L  M  F  M  R  L  S  F  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  G  F  A  G  L  R  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  K  W  *  T  L :   M  *  F  *  V  *  L  G  F  L  R  N  L  Q  S  W  I  V  M  L  K  W  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  P  F  F  V  L  R  K  L  L  V  K  G  V  *  L  S  *  H  I  S  R  M  T  L  P  K  Y  L  R  L  S  R  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  W  T  K  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  E  C  V  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0107N23.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121612" stop="121797"/>
                    <exon start="122542" stop="123054"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNVYEAKFRALSRYATQLCFSPQERIRRFAKGLRSELRISALQIAATAKSFQEVVDFDVILGMTWLSPQFAILDCNAKMVTLAKPGTDPLVWEGDYTSNPVRIISFLCAKKIISKGCLAFLAHLKDDTTQVPSIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLDKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 281 chains have been computed
$ 
$ memory statistics:
$ 768544 bytes spliced alignments in total
$ 78 spliced alignments have been stored
$ 9853 bytes was the average size of a spliced alignment
$ 28632 bytes predicted gene locations in total
$ 20 predicted gene locations have been stored
$ 1431 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 322 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:38:59
-->
