<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:31:59"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M617-F" ref_strand="-" ref_description="SGN-M617-F CT253-F [rflp_markers_forward]">
      <seq>gaacatctatgacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="9449" stop="11444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9749" g_stop="9917" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10820" g_stop="11145" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="495" r_length="326" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-M617-F" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M617-F" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9749" e_stop="9917"/>
          <exon e_start="10820" e_stop="11145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAAC</genome_strand>
        <mrna_strand>GAACATCTATGACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2193" ref_strand="+" ref_description="SGN-M2193 T1688 [cos_markers]">
      <seq>ttcaactggccggagttgcttccaatttccgatgacggagcaaaacgctgacgaagccaacactgttcaaacttcgaatattgacaatgtagaactggcaatagttgatggctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttaaggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgatcggagtggaatcaaggtctctggaaagcgaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatggttcttatattgtgaggtgttgtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17584" stop="19651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17884" g_stop="18146" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="263" r_length="263" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="312" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="439" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="510" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73">
            <donor d_prob="0.821" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19417" g_stop="19426" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="520" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-M2193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17884" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19417" e_stop="19426"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTG</genome_strand>
        <mrna_strand>TTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG.........................................................................GTGTTGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1442" ref_strand="+" ref_description="SGN-M1442 T0489 [cos_markers]">
      <seq>gaatttgggcaagatacttatgggaaacgagctgaaagtggatatggtaatgatggttatggcgatggggtgtttgcttatcagggtagtaaagtagagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72761" stop="70643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72461" g_stop="72123" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70943" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="417" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-M1442" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72461" e_stop="72123"/>
          <exon e_start="71020" e_stop="70943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACT</genome_strand>
        <mrna_strand>GAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9749" PGL_stop="11145"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9749" e_stop="9917"/>
            <exon e_start="10820" e_stop="11145"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.994"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="9749" e_stop="9917" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="10820" e_stop="11145" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9749" stop="9917"/>
              <exon start="10820" stop="11145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M617-F" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG : GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAAC</gDNA_template>
            <first_frame> E  H  L  L  Q  L  Q  P  L  I  F  V  H  Q  I  L  H  F  L  A  I  M  V  D  G  A  T  H  Q  G  H  I  L  T  W  L  N  L  L  G  K  K  L  V  S  T  E  V  A  L  F  P  S  C  T  K   : G  F  L  V  *  K  K  V  E  L  D  L  Q  *  M  E  G  T  I  L  S  Y  *  *  *  V  M  *  E  G  L  D  Q  F  N  Q  Y  K  L  K  D  Q  E  P  I  G  *  Q  W  L  E  I  G  G  P  I  G  N  Q  M  H  F  L  M  D  N  L  C  H  L  R  S  Q  H  Q  M  V  S  L  K  H  S  *  M  L  L  H  P  I  G  D  L  D  K  H  I  Q  A  L  L  T  S  N  F  K  K  K  K  N </first_frame>
            <second_frame>  N  I  Y  Y  N  Y  S  H  *  F  L  S  T  K  F  C  T  S  *  Q  *  W  W  M  V  Q  P  T  K  A  T  F  *  H  G  S  T  C  L  G  K  N  W  Y  L  Q  R  W  H  C  S  R  H  V  P  K  :  D  S  L  C  E  K  R  W  S  *  I  Y  N  K  W  K  G  L  F  *  A  I  N  D  K  *  C  R  R  G  W  I  N  S  I  S  T  N  *  R  I  K  N  Q  L  D  D  N  G  *  K  L  G  G  Q  L  A  I  K  C  I  S  *  W  T  I  F  V  I  *  G  H  N  I  R  W  C  H  *  N  I  L  K  C  C  F  I  Q  L  A  I  W  T  N  I  F  K  L  Y  *  L  L  I  L  K  K  K  K   </second_frame>
            <third_frame>   T  S  I  T  I  T  A  T  N  F  C  P  P  N  F  A  L  P  S  N  N  G  G  W  C  N  P  P  R  P  H  F  D  M  A  Q  P  A  W  E  K  I  G  I  Y  R  G  G  I  V  P  V  M  Y  Q  R :   I  P  C  V  K  K  G  G  V  R  F  T  I  N  G  R  D  Y  F  E  L  L  M  I  S  N  V  G  G  A  G  S  I  Q  S  V  Q  I  K  G  S  R  T  N  W  M  T  M  A  R  N  W  G  A  N  W  Q  S  N  A  F  L  N  G  Q  S  L  S  F  K  V  T  T  S  D  G  V  T  K  T  F  L  N  V  A  S  S  N  W  R  F  G  Q  T  Y  S  S  S  I  N  F  *  F  *  K  K  K  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9751" stop="9917"/>
                    <exon start="10820" stop="11126"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSITITATNFCPPNFALPSNNGGWCNPPRPHFDMAQPAWEKIGIYRGGIVPVMYQRIPCVKKGGVRFTINGRDYFELLMISNVGGAGSIQSVQIKGSRTNWMTMARNWGANWQSNAFLNGQSLSFKVTTSDGVTKTFLNVASSNWRFGQTYSSSINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="17884" PGL_stop="19426"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17884" e_stop="18146"/>
            <exon e_start="18265" e_stop="18313"/>
            <exon e_start="18429" e_stop="18555"/>
            <exon e_start="19273" e_stop="19343"/>
            <exon e_start="19417" e_stop="19426"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.821" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17884" e_stop="18146" e_length="263"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18265" e_stop="18313" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18429" e_stop="18555" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="19273" e_stop="19343" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.821" acc_prob="0.991">
            <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19417" e_stop="19426" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17884" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19417" stop="19426"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2193" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG : ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG : ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG : AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG : GTGTTGTGTG</gDNA_template>
            <first_frame> F  N  W  P  E  L  L  P  I  S  D  D  G  A  K  R  *  R  S  Q  H  C  S  N  F  E  Y  *  Q  C  R  T  G  N  S  *  W  L  S  F  R  H  R  P  E  I  R  T  T  N  *  R  T  T  R  *  R  T  K  E  T  F  G  A  E  V  R  K  P  P  N  F  S  S  F  C  C  *  I  Q  F  R  H  L  F  C  S  * :   F  Y  E  T  W  A  *  S  V  C  S  S  T  C  Q  W  :  I  V  H  N  W  V  G  S  D  P  H  C  F  *  G  *  R  R  S  Y  F  G  *  F  Q  C  G  E  V  *  S  E  W  N  Q  G  L  W  K  A  K  K   : E  R  S  T  F  *  V  *  Y  S  I  M  *  S  L  H  K  G  W  F  L  Y  C  E  :  V  L  C  </first_frame>
            <second_frame>  S  T  G  R  S  C  F  Q  F  P  M  T  E  Q  N  A  D  E  A  N  T  V  Q  T  S  N  I  D  N  V  E  L  A  I  V  D  G  S  H  S  D  T  A  Q  K  S  E  P  L  I  E  E  L  Q  D  E  E  L  R  K  L  L  V  P  K  L  E  N  L  P  I  S  P  P  S  A  V  E  S  N  F  V  T  Y  F  A  P   : D  F  M  K  P  G  H  D  Q  Y  V  H  R  H  A  N  G :   L  C  I  I  G  L  A  P  T  H  I  A  F  K  D  E  G  G  V  T  S  V  D  F  N  V  G  K  S  D  R  S  G  I  K  V  S  G  K  R  K  K  :  N  A  Q  H  F  E  S  N  T  A  L  C  K  A  C  T  K  D  G  S  Y  I  V  R :   C  C  V </second_frame>
            <third_frame>   Q  L  A  G  V  A  S  N  F  R  *  R  S  K  T  L  T  K  P  T  L  F  K  L  R  I  L  T  M  *  N  W  Q  *  L  M  A  L  I  P  T  P  P  R  N  Q  N  H  *  L  K  N  Y  K  M  K  N  *  G  N  F  W  C  R  S  *  K  T  S  Q  F  L  L  L  L  L  L  N  P  I  S  S  P  I  L  L  L  :  I  L  *  N  L  G  M  I  S  M  F  I  D  M  P  M   : D  C  A  *  L  G  W  L  R  P  T  L  L  L  R  M  K  A  E  L  L  R  L  I  S  M  W  G  S  L  I  G  V  E  S  R  S  L  E  S  E  K  R :   T  L  N  I  L  S  L  I  Q  H  Y  V  K  P  A  Q  R  M  V  L  I  L  *   : G  V  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17885" stop="18146"/>
                    <exon start="18265" stop="18313"/>
                    <exon start="18429" stop="18555"/>
                    <exon start="19273" stop="19343"/>
                    <exon start="19417" stop="19426"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>519</number_coding_nucleotides>
                  <number_encoded_amino_acids>173</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STGRSCFQFPMTEQNADEANTVQTSNIDNVELAIVDGSHSDTAQKSEPLIEELQDEELRKLLVPKLENLPISPPSAVESNFVTYFAPDFMKPGHDQYVHRHANGLCIIGLAPTHIAFKDEGGVTSVDFNVGKSDRSGIKVSGKRKKNAQHFESNTALCKACTKDGSYIVRCCV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="72461" PGL_stop="70943"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72461" e_stop="72123"/>
            <exon e_start="71020" e_stop="70943"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72461" e_stop="72123" e_length="339"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71020" e_stop="70943" e_length="78"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72461" stop="72123"/>
              <exon start="71020" stop="70943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG : ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACT</gDNA_template>
            <first_frame> E  F  G  Q  D  T  Y  G  K  R  A  E  S  G  Y  G  N  D  G  Y  G  D  G  V  F  A  Y  Q  G  S  K  V  E  P  Y  G  A  R  G  T  G  S  K  S  S  T  W  S  S  S  F  D  D  F  G  R  P  I  G  Y  N  S  P  K  E  R  S  S  A  P  T  A  K  I  V  K  A  I  P  K  V  D  T  Q  Q  D  A  K  S  G  V  Q  K  F  R  V  K  L  L  A  E  S  G  G  Q  S  T  Q  D  V  L  C  Q  :  I  G  L  D  G  I  R  M  L  D  P  S  T  S  R  M  L  R  I  Y  P  L  D  T  V  T </first_frame>
            <second_frame>  N  L  G  K  I  L  M  G  N  E  L  K  V  D  M  V  M  M  V  M  A  M  G  C  L  L  I  R  V  V  K  *  S  L  M  G  H  E  G  L  V  Q  S  L  R  L  G  R  L  V  L  M  I  L  G  G  Q  L  G  I  I  L  R  K  N  V  H  Q  L  Q  L  Q  R  S  S  R  Q  F  P  R  L  I  R  S  R  M  R  K  V  V  F  R  S  L  G  *  S  Y  *  L  K  V  V  D  R  V  P  R  M  F  F  A  R :   L  A  W  M  E  S  A  C  W  T  Q  A  L  A  G  C  *  E  F  I  L  L  T  R  *   </second_frame>
            <third_frame>   I  W  A  R  Y  L  W  E  T  S  *  K  W  I  W  *  *  W  L  W  R  W  G  V  C  L  S  G  *  *  S  R  A  L  W  G  T  R  D  W  F  K  V  F  D  L  V  V  *  F  *  *  F  W  E  A  N  W  V  *  F  S  E  R  T  F  I  S  S  N  C  K  D  R  Q  G  N  S  Q  G  *  Y  A  A  G  C  E  K  W  C  S  E  V  *  G  E  V  I  S  *  K  W  W  T  E  Y  P  G  C  S  L  P   : D  W  L  G  W  N  P  H  V  G  P  K  H  *  P  D  V  K  N  L  S  S  *  H  G  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72461" stop="72123"/>
                    <exon start="71020" stop="70943"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>417</number_coding_nucleotides>
                  <number_encoded_amino_acids>139</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFGQDTYGKRAESGYGNDGYGDGVFAYQGSKVEPYGARGTGSKSSTWSSSFDDFGRPIGYNSPKERSSAPTAKIVKAIPKVDTQQDAKSGVQKFRVKLLAESGGQSTQDVLCQIGLDGIRMLDPSTSRMLRIYPLDTVT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 4 chains have been computed
$ 
$ memory statistics:
$ 6840 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 8072 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2690 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 5 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:32:03
-->
