<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:31:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313310" ref_strand="+" ref_description="SGN-U313310        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28531744-28534427 REVERSE | Aliases: T4O12.22, T4O12_22(evalue: 2e-43, score=174) genbank/nr: hypothetical(evalue: 1e-43, score=181)">
      <seq>gagggcgtaaacgaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacccctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggaggtttgtttttttataaatttatcaatggatgcaaatgctggtagtatgtgaaacaccatcgtattatttactaatatctgattatttagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggtaggaattcttttgaaacttttagataaaggccctgatgatgatgtaagatttagagatataattcagctaacacctgctattagatgttttgatgctttcgggagtttgcttattctaagtgcatggggctcattggagttgccctctatctgttcaatattaagttggagcagaaatccttttactgttacctttctaattattaatttgttaaaaagcagaactgatgtcacctttatatgtaagtttgttctcttcctttatgtaaaacccagacagaggaagtatgcattgatgtcctggtaaagagattcattgctgggtcatgtcctggtaaagggattcatttttagggagataaatcaccaagttcgactcacagcagggtcgaagttaggtggattcatccaatatgccttagtcaaggctcataccgctcccaacactgtcctgattcaagatctaattcagttaacactgcaaatatatgtttttgaagtatttttctgaataaatgacgagtgctaagctttgggaaagctatttgtcaacccttctctcagcaacatctaaagtgcttgtgtgtgtccattttgctatgaggtagattttgatcgagtgaggtaatatgctcagaattacaattttgtaaacttgaacaattcgttctgaatgcttgaatgaaatataggcttctttgagatgtgggatcagataaatgtttcttaaaggttcttcatgcatacttcattttctgaataccagttacatgtgctttaagtcactgacgtttgaatgacatgtactcactcgtttttcttcaccatattttcaattgacaaccgtatgtcgagaatgatgaaagataatagggatgctctatttcgatgtgtaattggcagacttcacagagtgcaagtgtaagtggttattgttcatgacatgacatgtttgctgttattttatccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgtagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98" g_stop="188" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="214" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="295" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="384" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="459" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="3687" g_length="1379"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="1838" r_length="1379" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4071" g_stop="4429" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1839" r_stop="2197" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U313310" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2197</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="3687"/>
          <exon e_start="4071" e_stop="4429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAA</genome_strand>
        <mrna_strand>GAGGGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................CCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTAGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313311" ref_strand="+" ref_description="SGN-U313311        Tomato 200607 #1 [28 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28531744-28534427 REVERSE | Aliases: T4O12.22, T4O12_22(evalue: 9e-44, score=174) genbank/nr: hypothetical(evalue: 1e-44, score=183)">
      <seq>ggcgattggcggccaatcggccgaattgagggcgtaaacgaagaaacgaagccgaagaagagggctcttctttcgtggagaagaataatactaatcttatccttattcttataccaagatggatcggtaccagaaagtggagaagccaagggttgagacacctattgatgcgaatgagattcggattactagtcagggaaggatgcgaagctatatcacttatgctatgaccttgcttcaggagaaagaatcagaggagatcgtgttcaaggcaatgggcagggcaatcaacaagactgtgacaattgtggaattgatcaagaggagaattgttggtcttcaccaagtaacgtctattacatccactgatataactgatacatgggaaccccttgaagaaggtctcctacctctcgagaccaccaggcatgtatccatgattacaattaccctcgccaaaaaggagctggataagaatgctgtggggtaccaaccaccattgccagcagaccaggtgaaagtgtcaacagattttgactatgatggagaaggatctcctagtggaggacgaagaggccgcggtggtcgaggaaggggaaggtccagaggctttccaggaaatggatttatgccggctgagtatgatgatggtgggtatgatcgcaatcggagctatggtaggggtaggggtcgaggcagaggtcgtagctcccgtggccgcggaaggggagggtacaatggtccacaggatgtccagcaagatggtggcttctacaatcaagaagctcccatgcagggacgaggccgtggccgtggaaggggaactcgcggtaggggacgtggattcagatctaatgggccgatccaaggaggtggtgcttaaatggtcaagcttgaagaatacagagattatgtgctatgagtgcctgctccatgttctatgtttttcattcgttagttactccgtgttaacagtaggttatctatctgtaatcagagtagactaattatagatttcaggaccgcccgtatgtggtgatgttttcttttctttgtttttcatgatatcttctatctttattctctgcttgattaggtggttggtcaagtgtaatttcgttagtgagcagcacattctttgatttgtctttgtttgttgaaatgttcagtgttgatcttgttcgtaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="1" stop="4755"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101" g_stop="188" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="118" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="363" g_stop="485" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="241" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="1375" g_stop="1455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="322" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.534" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="1549" g_stop="1637" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="411" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1726" g_stop="1800" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="486" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2309" g_stop="2370" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="548" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="2460" g_stop="2528" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="617" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="3502" g_stop="3687" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="803" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4071" g_stop="4454" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="804" r_stop="1187" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1188" polyA_stop="1206"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U313311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1157</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101" e_stop="188"/>
          <exon e_start="363" e_stop="485"/>
          <exon e_start="1375" e_stop="1455"/>
          <exon e_start="1549" e_stop="1637"/>
          <exon e_start="1726" e_stop="1800"/>
          <exon e_start="2309" e_stop="2370"/>
          <exon e_start="2460" e_stop="2528"/>
          <exon e_start="3502" e_stop="3687"/>
          <exon e_start="4071" e_stop="4454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAGGTACAAATTTTATACATATTTCTTCTCAGATCTAATTGATTTCACCCTAATTTCTTTCATCTGTAAGTTTAATTTCATTAATTATTCTGTTTTTGTTAATTGTTGAGATTTGATGAAGTTTTTTGATGTTAATTGTTGAGATTTGATGTTAATTGATGGTTTTATGATGAATAGATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAGGTAATTCCTCTTTATAAGGATGTCATTTTTTGTTTAGAAGAATCGCCTGTGCGCTGTTATTTTTTTTTTTTGTTTATGCGTTTTTGGTGCTTTGTTTGGATGTGCTAAATTTGGTGAAATTGAAGTGACAATGGAGAAATGGTTTTTTTTTGGGATTGAATTCATCACGTAGAAGAAGATTAAAATGTGTATACTTTCGTGCAAATTATGAAATTTGTTTTTTTTTTCTGCTTAGGTTGTATCGCCTTTTGAAGTATCATCTGTGTGCTCTTTGTTTTGTTTTTCATGTTGTGTTGTGTGCCTGTTTATCTGTTTCACTGCGGCCATTCTGTTGTATATGGTGCTATGTCTTATAAAATTTATCAGTAGTAGTGGAAGGAAACTGAAGTGATTATGGAAAGGTAATTGTTTGATTAAAAGCATCACATAGAAGATTAAAAGTCTATAGTTTTAATTGATTATATGTTGTGAAAATAATGAAATTTGTTACTTTTTCTGTTTAGCGCCTTGAATAAATTTAAGTTTTTTTCTTCGATGAATCCTCTGTGCTCTGTTTTTTATTTTATTTTGTTACGTTATGTGCTTGTGTTTATCTGCTTTACTGCAGCCATGCCGTTATATATGATATGCTAAATTTGGCTTACATGGTTTATTAGTAATAGTAGATTGAAACTGAAGTGACGACGGAAAATATTTGTTTGATGGGAAGCATCTTACAGAAGATGTAAATGTGTTTAGTCTTAATTGATGATATATCTTGCAAATTATGATACTGTGCATATGCCTGCATAGTGTGAATTCATGTTTTTACCACTCTATAATTGATATTATTCTGCGTGGTGTCACTCTTCAGAACTTGACATCCTTGTCGTTATGCTAATATTTTTAGGAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAGGTAAAAAGTGGATGTTTCTCCTATATAGTTTCTGTTGTTTCTACCTATCTTATTGCTGATGGAATTTTGCACATTGATATGGGGCTTGTGCAGAGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACCGTAAGTGCATATTTGAAGCTTTAGAAATTAAGTTGTGTTGCTGTATGTATTGCTTTAATTATATATGTTACTGCTCTATTGGTTGCAGTCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGGGTGAGTATTTTGGTCTTTACAGTGTAAATTTCCTCCCAAGAATGTGAGGAAGTCAGATTTAATTATCACTCTTGCATGACTCTGTTATGTAATATTTCTATCTTAATCTTGAATGCACGTGGAATTAGATCTTCCTATTTTGAAGTGCTTCCATCTATAATGTAGATGGGATTTCAGTTTCATTTTTTTTACAGTTCTATAAAATAATGTAGATGGAATTTAAAATGTTAGTTTGATATATTATTATGTCATATTGCCAGTAGTCATAGGAAATATTAGATAGATGGTTGTAAAATGTTGGGCAGGAGGCGTTGTTAACTTTACAATATTGAAGAGTTCTTCACTTGTGTATTCCACATTTACTGGGCCTGAGATATTTATTTCTCATGTTCAATGGTTGTCAATTTGCAAAACTAAAAATAATGTGGCCGTTGTGCATGTATTATAATTTGGTGCAAGCAAATTGGTTTGCAAAACTTGTAGGCTCATGCTTTGCTCTCGCCTACAGGTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAGGTAGAGCTTTGCTGCCTTTCCATAATTTGTGTTTGTTCTATGGTTTATTCTGCATATTTAGTCTAGGCGCACTGCTGCTGATACCCAACTGCCCTTCCTTGCCCTTTTAAACCCAATGACCTTTATTTTCCCTTCACTAGAGTAGTGGCATCGCATGTGGTTTGTTTCATGTTGTAAATAGTTATGAACAATTTCTTGGAGATCCATGCTGGAATGGTTTATGCAATCCGCATGCTGTGGAGCTCTGTTGGTTTCACAACTGAGAAGATGCATGTCCTAATAGTGTACATTTTTGTTACCCCAACTACTGAGAAAAATTGCCAGTTATCTATGCGATTTTTCTATTCTTGACATCTGTAGCTGATATTTTTGTTTTGTTGTAGGCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAA</genome_strand>
        <mrna_strand>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG..............................................................................................................................................................................ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG.............................................................................................AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC........................................................................................TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG.........................................................................................AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317772" ref_strand="+" ref_description="SGN-U317772        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | expansin, putative (EXP11), similar to GB:U30460 from (Cucumis sativus); alpha-expansin gene family, PMID:11641069 | chr1:6998480-6999742 REVERSE | Aliases: T20H2.4, T20H2_4(evalue: 5e-110, score=394) genbank/nr: gi|30519752|emb|CAD90260.1| expansin11 [Lycopersicon esculentum](evalue: 2e-149, score=531)">
      <seq>gagaccattatttctacaacacataccatttcttcttcctcaatttttcttctatatttttcttaagaaaatggccaaaattggcattttaacattaggtttcatatttgttttttgcaacattttggttagtactgcaaatgctttctctgcttctggatggatgagtgctcatgctactttttatggaggatctgatgcttctggcacaatggggggtgcttgtggctatgggaacttgtactcaacaggttatggtacaaacactgctgcattaagtactgcattgttcaatgatggagcatcatgtggtcaatgttacaaaattatgtgtgattataatcaagattctaaatggtgcataaagggaacatctattacaattacagccactaatttttgtccaccaaattttgcacttcctagcaataatggtggatggtgcaacccaccaaggccacattttgacatggctcaacctgcttgggaaaaaattggtatctacagaggtggcattgttcccgtcatgtaccaaaggattccttgtgtgaaaaaaggtggagttagatttacaataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaacaaaagtcgaaaagttcgggatttgaagtttatgagtttatatttatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgccccccttcctctgtcttcttttattcgatattcgaaatatactggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgcatatttattttttatatatcaaaagaatataataagaccttttgtctttgatgcaaatgtttgtaggtgcatcaaacatctatacttctaatttttatttttatttttgccctctattgtaagcttgtattgtaataaggtcatgttatacatatattgtatcaaatgttcctatgttttggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8510" stop="11870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8809" g_stop="9023" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9596" g_stop="9917" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="537" r_length="322" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10820" g_stop="11569" g_length="750"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="1287" r_length="750" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1290" polyA_stop="1306"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U317772" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1287</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8809" e_stop="9023"/>
          <exon e_start="9596" e_stop="9917"/>
          <exon e_start="10820" e_stop="11569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGACCATTATTTCTACAACACATACCATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGGGTTAGTTTTGCAAATTTTGTATATCAAAATTTTACTAAATTTTATACGGCACTCTTTTCTTTTTAATCTGTTATAAAAATAATTACTTATACATTTTTATCATTAATCATGACATGCTCTTAATAGCTATAGAAATGTCACGTGTCATATTTAAGACCATGATTTTTATTAGATATACTTTTGATATATCGTAAAACTCTTTATATTGTCTTAAATTTCATGTTCATTCAAATATTCTACGAAATTAGAATTTGAAACTTTTGATTTTTTGTAGTTTTAGTCTTTTTGAGTCATTAGATTCTAAATTGATGGTATATATTAAATAAATTTGTTGAGTCGAATATAAAGTATTAGTCAAATTAGTGAATTCCGTCAAACTCGCTTCTTATCTTTTAGCTTTATCTATCCCTTCGTAAAATAATAGTGAAACATATATGAATTTTTTTTAATAGTCTAAATTTTATTTTCACGAAAATTTTTATGCTCAATCAAATACTGTTTTACGAAATAAGATAGAAGGATAGTTATAATGACATGAATTCTGATTATTAACAAATGATTGTATGGAACAGGGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAGGTAACCGTCTGTTTTAATTTGTTTGTCTGGTTTTAATTTGACATGAAGTTTAAAAACATAACTATATTAGGCTTGAATTAAAGACATGTAGAATAGATCACAAAGTTTTTCAATTTTAAGCATGTCATATAGAAATTCAGAATTAAAGGATTATTTAAAAAAAAATTATTTTGAAACGGTCTAAAAGGGAGAGTAATAAACAAATCGAAATGAAAAAAATATGATTTAAGGTTGTCTGATTTATCAAAAAAAAAAATAATATGATTTGTCAAATTTGTTTCAAGTTTGAACAAATTGTTATATCCATGGGTCCCAAGTTGGATGGGCTAGATTATAAATGTAACATTTGCATAAATAACCACTTTTGCGGCTATTTAAAATTTGTTCTCTAAAAAGCCTAGTGGGCAAGATTTTGTTTACAAAAAGGATAACTCGTCCAACTACTTTTAAAGGCAATTTATTTCACTTAGCTAACACTAAGAGAATTTAAAGAGTAGCCTCACAAAAGGCTATAAAATTAAAGAGGTATAAATACTTTCCATTATTTAGCCCAACTTAGATCCTACATAAATTATGCCTCAACCATTTTAACACTTTCAAATTCAGCTCAAACCATATATTTTGACACAATATTTACTTATAATAATTATATATCCAGTGAAATTAGGTTAATAGTGCAAGAGTTATATACACTATTCTCATATATACATTTCAATAGACAATATATACTATCAAATCTCTTTATAATATAAATTGTCCCGATATGTTACCACTACCACATAATATAACATAGCACGAAATACCAAATTCAGATAAAATATGACTGTTATAGTGAAATATTACTATATATGATAACTGTTATATAGAGGTTTGACTGTAGTGTGATATTTGTGTGTTTGCAGGATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTT</genome_strand>
        <mrna_strand>GAGACCATTATTTCTACAACACATACCATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317771" ref_strand="+" ref_description="SGN-U317771        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | expansin, putative (EXP11), similar to GB:U30460 from (Cucumis sativus); alpha-expansin gene family, PMID:11641069 | chr1:6998480-6999742 REVERSE | Aliases: T20H2.4, T20H2_4(evalue: 4e-32, score=134) genbank/nr: gi|30519752|emb|CAD90260.1| expansin11 [Lycopersicon esculentum](evalue: 6e-42, score=173)">
      <seq>aataaatggaagggactattttgagctattaatgataagtaatgtaggaggggctggatcaattcaatcagtacaaattaaaggatcaagaaccaattggatgacaatggctagaaattggggggccaattggcaatcaaatgcatttcttaatggacaatctttgtcatttaaggtcacaacatcagatggtgtcactaaaacattcttaaatgttgcttcatccaattggcgatttggacaaacatattcaagctctattaacttctaattttaaaaaaaaaaaaaacaaaagtcgaaaagttcgggatttgaagtttatgagtttatatttatacgtgtgataggcagcggcgtgcttactgttttactgaaagcagcccgccccccttcctctgtcttcttttattcgatattcgaaatatactggctcgattattgatgaagtaagttcatgaactctagtccgaaggtgctggaaacataaatatatttgaaatttattgtgtgtatgtagtgtagtgtgaaatttgcatatttattttttatatatcaaaagaatataataagaccttttgtctttgatgcaaatgtttgtaggtgcatcaaacatctatacttctaatttttatttttatttttgccctctattgtaagcttgtattgtaataaggtcatgttatacatatattgtatcaaatgttcctatgttttgcttcaaaaaaaaaaaaaactaaaactcgagacaagttctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10556" stop="14542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10856" g_stop="11577" g_length="722"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="722" r_length="722" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="723" polyA_stop="734"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U317771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10856" e_stop="11577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTTGCTTCAAA</genome_strand>
        <mrna_strand>AATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTTGCTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331062" ref_strand="+" ref_description="SGN-U331062        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G42180.1 | Symbol: None | peroxidase 64 (PER64) (P64) (PRXR4), identical to SP:Q43872 Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis thaliana} | chr5:16869860-16871448 FORWARD | Aliases: MJC20.29, MJC20_29 (evalue: 2e-69, score=258) genbank/nr: peroxidase(evalue: 1e-69, score=264)">
      <seq>attaaccacaaacaatatactataagcttttaatttttgataattttgatggcattacaaagtgtttttgtaattacttttgtgttattttcatgtgtaaatgcacttagctccaattactatgatcaaacatgtccagatgcagaatcaactattagacaagttgtaaaaaaagcaatgtcaaatgataaaacagttccagctgctcttttgaggatgcactttcatgattgttttgtcaggggttgtgatggctctgtgctgttgaattcaacaaaaaacaaccaagcggagaaagatggacctccaaatatttcattacattctttttatgttattgacgttgctaagaaacaaattgaaaatatgtgtcctggcgttgtctcttgtgctgatattttagctcttgcagctagagatgctgtcactctttctggagggccttattgggccgtaccaaaaggtagaaaagatggaagaatttctatagccagtgaaacaagacaattacctggcccaaattttaacatctctcaattgcaacaaagctttctccaaagaggcctttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="14411" stop="16811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14711" g_stop="14953" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14954" i_stop="15433" i_length="480">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15434" g_stop="15622" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="432" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15623" i_stop="16372" i_length="750">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16373" g_stop="16511" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="571" r_length="139" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U331062" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14711" e_stop="14953"/>
          <exon e_start="15434" e_stop="15622"/>
          <exon e_start="16373" e_stop="16511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGGGTACGTAAATTTAGTTTCTATTTCTACATATAAACATAAATTTTAAAATATTGTAATTTATTAATCGATATGTAGTTTAACCTATGATAATATATAATATTAGCTATAATTTTATTTGGTTATAAATTACCGAGATACTATATTATGTCATCTAATTAATCAGTAGCTTTTAATTATAGAGGAAACAATGTGTTTAATTACTTAAAGGGCTAAAGAACTACCTTAGCCCATGAATAAAACAAGTTAATATAATGTTAATTTATTTACACGTAAATCAATATATCAAGATGAGCTTAAAATGAGCGATATAATCAGGTTCATATGTGATCGATTATATATAATTGTATAAATATCTTTTACCCTATCAATCTTTTGAACGTGAAACTTTCATGTTGTAATATTAGGACATAGTATATGCTATATGGTTATTAATTACTAACTAACTTATGGTATTTTTTTTCTCCTCAAATTTTTATGAAGGGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTTGTGAGTTCTACTATAACCTTTTAGATTTTCGGCGTGTGAAATTTACTAACTAGATTAATTTGAATTTGCATCATAGAAAATTATATTTAGAACAAAATGAAGAAGAATACGATGCTAAAATAATACAACGTAACTATTAGGGTTTTTTTGATAGTGTGCATGATAATACCATCAAATACGATGTTTTAATAATGTTGAAATTAGTTGTGTTTGATATTATCTTTTGTCGATTGTTTGATTAGTTGTATTAATTGATAGGGAGTTTAGAATAGAAATAGTAACTCCACCCACCATCGTATTATTAATATCATGATTTACTATATTAAAAATAGTACTAAATATAGTGTATAACTAATATATCTATATCTAAGTTGAAAACACTGTCAAACAAGAGCTAATACATTATTGTTTAATTTCTCTAACACCTTCTATCAAAAGAGAACTTACTTTAAACATATGTAGACAGTGCACAAATGCATTTTCTATAATCATGGTATTTTAGTCGGTTAGTTTTTGTGCACACCTCGACTAGTCAGGGGTATATGTTACCTCCCACTGATATACGTAGTTTGTAACATTACTTATCAAGGCTCGAACAGATAAAAAAATATCATCTAATATTCTTACCTTTGCTGGAATTTAAACTTGAATTTCGATAATTCTCAACCCATTTCATTATTATAAATAAATTTTATGTTATTTTCTAGAGGTTATATATGAAAGACTAATGTTGAAATTATTTTTTTTCAGTCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATTTCTATAGCCAGTGAAACAAGACAATTACCTGGCCCAAATTTTAACATCTCTCAATTGCAACAAAGCTTCTCCCAAAGAGGCCTTTCTT</genome_strand>
        <mrna_strand>ATTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATTTCTATAGCCAGTGAAACAAGACAATTACCTGGCCCAAATTTTAACATCTCTCAATTGCAACAAAGCTTTCTCCAAAGAGGCCTTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328630" ref_strand="+" ref_description="SGN-U328630        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT5G42180.1 | Symbol: None | peroxidase 64 (PER64) (P64) (PRXR4), identical to SP:Q43872 Peroxidase 64 precursor (EC 1.11.1.7) (Atperox P64) (PRXR4) (ATP17a) {Arabidopsis thaliana} | chr5:16869860-16871448 FORWARD | Aliases: MJC20.29, MJC20_29 (evalue: 7e-42, score=167) genbank/nr: peroxidase(evalue: 2e-51, score=205)">
      <seq>ttttttttttttttttgcatatgtacaatcaaatcaatacaaatcctcaaattaatcccttcacaaactcctctccatccttagaaacacacatttgacatattattacccacacaaatgaataaaaaatcaaaccaaaccaaaaattacaagttattttcgtgcaataaaacattcctctaataaaaaaggactccatgctcagaccaagcttcaattaacaaatctacaatcatgccttatttcttgaccagaaccgctgatactgctcatcttaatcattgaatcagcaaaagctttaaagaactcgtgttgggaattggcaaaatttaaaacaagtgttttggttcttgaatttgtgagtaaagttgaatcagaagaaaaaagacctttcttttgcaatattaatttataatacgcgttatcgaataaaaatgtcgtagtatccatagtagcccctgcattttttgttgtgtttttaacagggcatattttctttaaattagctgcaaacgatgcgtctagtgatggatcgacgtcgtttttgctatcgaagttttctattctgtttcggaatgatgaacaatgagaaaatccaagagtgtgtcctcctgaatattaaaaaaaaaaaaaagttagaaaaaagtaatttgataattttattataagttcagtaattatacgtgaaattaattcgtaaattatacctgaaagtgcaaccaaatcatctaaagaaaggcctctttgggagaagctttgttgcaattgagagatgttaaaatttgggccaggtaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="70589" stop="16145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17242" g_stop="16445" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="798" r_length="798" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U328630" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17242" e_stop="16445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTGTTTATTTTTGCATATGTACAATCAAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTCGTAGTATCCATAGTAGCCCCTGCATTTTTTGTTGTGTTTTTAACAGGGCATATTTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTTTGCTATCGAAGTTTTCTATTCTGTTTCGGAATGATGAACAATGAGAAAATCCAAGAGTGTGTCCTCCTGAATATTAAAAAAAAAAAAAAGTTAGAAAAAAGTAATTTGATAATTTTATTATAAGTTCAGTAATTATACGTGAAATTAATTCGTAAATTATACCTGAAAGTGCAACCAAATCATCTAAAGAAAGGCCTCTTTGGGAGAAGCTTTGTTGCAATTGAGAGATGTTAAAATTTGGGCCAGGTAATTG</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTGCATATGTACAATCAAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTCGTAGTATCCATAGTAGCCCCTGCATTTTTTGTTGTGTTTTTAACAGGGCATATTTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTTTGCTATCGAAGTTTTCTATTCTGTTTCGGAATGATGAACAATGAGAAAATCCAAGAGTGTGTCCTCCTGAATATTAAAAAAAAAAAAAAGTTAGAAAAAAGTAATTTGATAATTTTATTATAAGTTCAGTAATTATACGTGAAATTAATTCGTAAATTATACCTGAAAGTGCAACCAAATCATCTAAAGAAAGGCCTCTTTGGGAGAAGCTTTGTTGCAATTGAGAGATGTTAAAATTTGGGCCAGGTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320359" ref_strand="+" ref_description="SGN-U320359        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28526215-28527963 REVERSE | Aliases: T4O12.20, T4O12_20(evalue: 2e-75, score=280) genbank/nr: gi|15222925|ref|NP_177725.1| expressed protein [Arabidopsis thaliana](evalue: 1e-73, score=280)">
      <seq>cctccgtcgacttcaactggccggagttgcttccaatttccgatgacggagcaaaacgctgacgaagccaacactgttcaaacttcgaatattgacaatgtagaactggcaatagttgattgctctcattccgacaccgcccagaaatcagaaccactaattgaagaactacaagatgaagaactaaggaaacttttggtgccgaagttagaaaacctcccaatttctcctccttctgctgttgaatccaatttcgtcacctattttgctcctgattttatgaaacctgggcatgatcagtatgttcatcgacatgccaatggattgtgcataattgggttggctccgacccacattgcttttaaggatgaaggcggagttacttcggttgatttcaatgtggggaagtctgatcggagtgaaatcaaggtctctggaaagcgaaaaaagaacgctcaacattttgagtctaatacagcattatgtaaagcctgcacaaaggatgcttcttatattgtgaggtgttgtgtgaaaggatcgttattagaagtcaatgataggttaattaagcaaccagaattgctgaactcatcggcagacagagaaggatatattgcaattataatgccaaggcccgcagattggatcaaggccaagactactttgctgggcattgaagaatatagagagttgagaaaggatacattgcaattataaacaagcaaggtggcaaatcagctcattgaaggcagcattttgcaggattggagtttacgttgttggaaaagtttgcaggatgttctctctctgtaacagtaagctctactacttcactacacacttctgctattggcatacagaagaacagtatcaaacttaattaacgttcttatttgtacttttctggtgtattatttggatggggtggagtttacttgtccacaatgctccatcactccatattttgtttttcagagcaatatgataaaaaaacatatagtccgtagttactatatgaaaatgtaacatgtctattatattgctaattttctagaacatgaaaaatgagaagaatttgtactttctatgacctcccattaagtttacaagaaaacaaaatggaggaaaagaattgttccattattaaagacaaaaaacacgaaaaatttacttgtctttgttgtcaaaaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17573" stop="20999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17873" g_stop="18146" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18265" g_stop="18313" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="323" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.938" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18429" g_stop="18555" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="450" r_length="127" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717">
            <donor d_prob="0.908" d_score="0.98"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="19273" g_stop="19343" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="521" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73">
            <donor d_prob="0.821" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19417" g_stop="19489" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="594" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618">
            <donor d_prob="0.815" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20108" g_stop="20698" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="1185" r_length="591" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1186" polyA_stop="1207"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U320359" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1185</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17873" e_stop="18146"/>
          <exon e_start="18265" e_stop="18313"/>
          <exon e_start="18429" e_stop="18555"/>
          <exon e_start="19273" e_stop="19343"/>
          <exon e_start="19417" e_stop="19489"/>
          <exon e_start="20108" e_stop="20698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCGTCGACTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTGGTAATAAAGCCCAGTTCGAATTCGATGAAATTGATGCTCTGCTTTGTTCGAATTAAGTAGTTCAGAACTCAAACTTGTTGAAATTAAGAGTTGTATTCCTTTTTAATTGTTGTTGCAGATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGGGTAACAGAACTTAGTAATTAAACTCTTTGTGCTTTGTTTTTGCTTTGATTTAGTTGCTGGTTTGAATTTTGAAGATTGAGTTTTTGCTGATTTTTTGAACTTGGGTTATTGAAAGATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAGGTATTGATAGCTGAATTTTACTTGAATGAGACTAAAGATTGCATCTTTCTGCTGAACTTGATTAAAAATGAAAAAAAAAATTGCATCTTTATGGCGAAGACGCAAAGTAGCATAGTTTGTTCATGCAAGTCATTGCAATTTTATGGCTTATTAGTTGTGTTGTAGCTAGATTGATGTTGTTGGATAGAAGTTGACTTTAATTTTATGATTTACGGAACTTGTTTAGAGTTTTAAATATGCGAAGAATCATAAGGGATGGCTTTCTTCTGAAGAACATAATTCTTATTGTTTTCCCTGTGAAGAAAAGCTAACAACTTAAATTTGCTCTATTGTCTATGTTTTATTTATTAAGGATAGCTTCGTGTGAGATATTACTCGAATTTCTAGTGTTGCCTATTTGAGAACTTGACAAAGGTTACTTTCTGAACATTAGCATACAGTGCCAACTATTCATCATATGGAATTACCTTGTCAGCAGTAAATATAGGTGTGGATTATGTCACATTAGTTCTATACCCTTTATCGTCAGCAAAACAAATGATTGAAATTATGAAATATGAACATATGTACATTCTTCAGTCTTTTGAAACAACATACTTTATTGGCTACATAGAGAACACAAGTCATCATTGCGACTTACCACCATTTGCTACATATGCACAATTGTATGAACTGTGCAAGTAAAGCTAATCTTTCATTGCTTTTGTTCTTATGCAGAACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAGGTATGAGTTATATTCTTGCACTCCTTTCTTTGACATTAAAATCATTAGAAGATGATCTACTCATGTTTTGCAGGTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTGGTAGTAGTTCTTACCTTGAATTAATCTCTTCTTCATTTTGGCTTTTAGACGTTGAACTTCATTGAAACGAGCATCGTTTGTTTATGGAGTCATAATATCAATGCTGTCAGCAAATGTATATATTCGTGATGATGAAGATCTTGGAACCTTCACTTGTATTGCATTGAAGCTCGAAAAAAAGATCTTTGGCTGATTTTTCAGAATACAACTAAGTGTTTTGCATGATATGTTCTCATTTATGAGTTTTATTTTAAAAAGAAGATATCTTTTGATTCATCAGGTTGTTGCAGACTCGTATTTCTTTACCCCCTCGAAATGTTTGATGCTGAATTCACACCTTGTTTTGCTTGATGTTGATAAAAGGATCTCAAAATAGGATATGCATGACCTCCATAATAAAAGTTGTGTTTTTGTCTTTTTCGTTTTAATATTTAAAGAGCTTCTCATAGACATGTTCCAAGTGGCATTAAGTTGTGTGTCATTTGATTGTGCCAATAATTGTGACATTGGACTTGTTTTGCACTAATAAGATATTGTTTCATTTGACATCTTCCTCCTAATATTATAATTATGTTTCTTGTTGAATATGTGTTCCTCGTGTTTGCTTTCTTACAACAGGCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</genome_strand>
        <mrna_strand>CCTCCGTCGACTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATTGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG......................................................................................................................ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG...................................................................................................................ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGAAATCAAGGTCTCTGGAAAGCGAAAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGCTTCTTATATTGTGAG.........................................................................GTGTTGTGTGAAAGGATCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACTACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGGCAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319747" ref_strand="+" ref_description="SGN-U319747        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | La domain-containing protein, contains Pfam PF05383: La domain | chr4:16997142-17000836 FORWARD | Aliases: T19K4.20(evalue: 3e-10, score=62.8) genbank/nr: gi|7270541|emb|CAB81498.1| putative protein [Arabidopsis thaliana] >gi|3805855|emb|CAA21475.1| putative protein [Arabidopsis thaliana] >gi|3036793|emb|CAA18483.1| putative protein [Arabidopsis thaliana] (evalue: 2e-08, score=62.8)">
      <seq>tgaaaccctaaaatttacagcctttctctctcacacctgatgctttctaaaaacctcaattttcttctcatcactcttccttgaatttcgtgcctgattttcatcttttttctctctgcatttttgtttaatctctttgattctgttgatcggttctggatttttttttctgaatttttttttgatttttttgttttggttttgaatggccacgccgccgccggattcttctgctagtccaccggcggccaatacagatggtgtcgccgttgtgacatccggcgccggtgcagcggccgtcggggctactgtcagcagtcctcaagctcgccggagtttgcaagcaccatgggctcaagtggttcgtggaggagaggttgaagcagtatcagtgtcaagtcctcgctcgccgtcaccgatggcagcggctgcaggtgtttcgccggagaaaatttcgctgtcggatgattgctcgacccagaagatttcgccggagatttctacttccggtgctctgccggagagtgctgatagcaatgagggcaatgtaggtcggccgaagaagcctgcttggaataaacctgtaaacggtgtagttgaggcggtttctgttatgggtggggctgtttcctggcctgctctctctgagtctactcggcctagcccaaaatcagctacaaatatcagcagtgctacagaagtgaccgatgctcatctggaggtagctgctggtggctcatcggacgaatcagctaatcaatcaaacgcagctcaagaagaaggcagcgctggcgtggaaaatatctctaccaaccatgcatgaaataatactgtcgattttgcaacgagtggcaactctgttttgcattctgatttaaaggaaggtgtatttggaagggttatacatacatcatttgctgcccttgttggagggcatactttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="30485" stop="36118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30785" g_stop="31458" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="674" r_length="674" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31459" i_stop="35547" i_length="4089">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35548" g_stop="35818" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="675" r_stop="945" r_length="271" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U319747" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30785" e_stop="31458"/>
          <exon e_start="35548" e_stop="35818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACCCTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAGCTACTGATTCAGCAAAACTTCAAGATGGATCGGTTTCTGTTTCTCAGGTTTATTTATAATCTAATGTTGATTTTTATTGTCTAAAGTTTCAATTTTTATTTAGTTTTGCGTACTTTTGATGGCTAAAATGTTTACTGTATTTATATTTATTATGTTGATATGAAGGAATTAAAAGGGGTATAAATGATTAATTGGTGTGTATATATGTTTTTTGTGAATAGGGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCGAGTAAGTGATATCCCTATTTCTGTAGTACGTATTGGTTGATTGCTGAATCGGCCTATATGATAATTTGATAACACATCATTGTCTTTCCTTTCCTATGTTGATATGCTTAGGACTATGTATGTCTTTTTTTTTTCTTCAAATTATTGGAACACTTTTTGTTTGCTTAAGACATGATCTGTGTGAGTGATTGACTTTATAATCATGATCTGGCTGTGATTATCCTTGTATTCTCTTTGATATTTAGCTCAGCTTGCTTAACTAAAATCATTGATTCTCAGCATAAAGATGTCACAAGTTCCTGAACTCATATGCTGAGATCATTTGAGCTAGTGAATTGCATATAGTAATTGTCAGGTGCTTGGAGATAAACATATGAAACTAGGTCATGACTCACAAAATGCTCTAGTTGAAATTGAGTTCTCTTTGAATTATTCAGAAACTAGCGTATGCAATAACTGTTGAACTTATCTAGAATGGGTACCAAATCTATACAAATAGACTAAATTCAGGATTGGAAGTGTACTTTTTCAGGTTTATTCTGGTTTCATTCCAGCTACCTATCCAAATTTGGATATTTTCTGATCCTTTGTTCTAGCTTAATGTCTTTTATATTAGAGCTGACTTAATCTTTCCTTGAACCATCTATGAAATTTACTTTTGTAGTACAAATTGAAAATACTAGACGCGTAATTTGTCTAACTCTTTTAAAAAACTTATAGTTCCTTTGATTGGTGACTGAACACACAAGTGTGTTTCTCTACTAAAGGAAGTGATACCTCTCCCAAAGCATCTATGCCAGTCTCACATTTGCTCTTCCACCTATATGTTTGTTGTAGCTTCTGGAGGTTGTTAAATGCAGACCAATTGTAGAAAGAATTTTGATTGAGCTGTAATGTTCTGCTGTGTTACATTGTTTCATGTTGGTTTACTTTTGATGTTTATCAGCATAGTTTCTGTTTGCTGATGGATGTTATTGCAGTTGACAGAAATAACTTTCATTGAAGAGAAAATCTGGAGATCAGAGTTCCATTTGGGCATTTCTTCTTTATTTTATTTAATTTGTTGGTGCACTTACAGGAAGTCAAGGATAGAAAATGGGAATTGGTTTCCATTTCCTTTTCTATTCAATTTAAAATCCGTATCCAAATTTATATTTTATGGCAGCTGTTTTCCGAATTCTATAATTTTCAGTAAGAGCATTTTGATTTGTTCTGCTTGAAATTGTTGCACAAAACATTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACATTTTTGGGGATGAAGGTTTTGCTTGTGGTCTGTTTTGCAGGTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAGGTAATATAGCAATTATAACTTCTCTTGCCTTGATGTATTATATTCTAATGCTTTTAAGTGGGTTAGGAAAAAAGATGCTTGATAATATTAGATAACACTGCCTCTGTATTTTGAACATGTTGTATCATTAGTTAAGAACTTTTATCTTGTACTGCATAGTCTCCCTGTTTATCCTTCTCTTCCACTATTATCACATGATATCAAGTACACATTGAGGTTCCTGTAGTTGTAATTTCTTTACTGAACTGCCCGTGTGAGTTCTTGTGAATCAAATATTTCTTCATCTTTTTGGAAGCTTTTTTCATGAACTGAGAGAATCCACATCTTATGGCATCTCACATAGTTATGGCCTTCTAGGGTAAGATAAGTGAGACTCGAGGAGCCTAAAGTCCTTTGCCTCTAATATAACGTATTTGTTTTGGGTTGTCTTGTAAGGGTGCTGCATTTCGCACAACATAAACTAACTACTTGAAATTGATTTTTGGTTCTGCACCAACTGTTCCACTCTTGCTGTATCAGCAGATGGGTGTTCTAATCTGTTACTTGAAGTAATCTTGATGGTAGTGATGTGATTTTTTGTAGGATGACAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTG</genome_strand>
        <mrna_strand>TGAAACCCTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTTCTGGATTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCATCTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACGCAGCTCAAGAAGAAGGCAGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGGCATACTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319748" ref_strand="+" ref_description="SGN-U319748        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | La domain-containing protein, contains Pfam PF05383: La domain | chr4:16997142-17000836 FORWARD | Aliases: T19K4.20(evalue: 3e-24, score=110) genbank/nr: RNA-binding(evalue: 5e-28, score=129)">
      <seq>atcggtttctgtttctcagggtccaataatttctcagtcacctcaaaaacaggctaatgttaatgcaaacacaaattcaaatgcaaatcctacaacccctgttagacaaagatcaataaaatacagaggtagtagcagcagtggtggtggtggtggtagtggtccaggtgctggagcatttattagaactccgcctccacctccacctccattgcctcctccttttcctgtaatgcatttcccacctgttcttgagcctcctgtaagaggtgcaagacctgttggaggatttccgtctcagccgcatggagtaaatgatcattcttcccatagaaatcatggcaggaaaggtaactttgggggccgacctcgtggagatgggtcttatcataacaatcatgggggaaggcgtgatcaagatcggagagacgttcatatgggtcctccatttgctcctcctcctcatgcagcgtttatgcgagctccactccctggttctggtccatttcttccaacccctatgagaacaccttttgttaatcagatggcatatgatatgactcccttcttttacgttcctccactgagtccggagccctatagtgctgtgcctatcatcaaccaagctccacaattaccccaacatttacctttagtggatccaaatttgccttcctccttggttaatcagatagagtattacttcagtgatgctaatcttgtaaaagatgactttttgagggtaaagatggatgaggaagggtgggttcctatgcatctgattgctaactttcctcgagttaagaaaatgacagagaaggtccagtctgatattatccagttcattttgtattgtttgagggcttcaacgtttgtagaagtgcaggatgataaggtaaggagacgggatggttggaggaaatggactcgtactgctggccagcttgcagctgattcaggtttgtccacacctgttgcatcgacagatagtgctccaacagcttccgtgcagaatgtctctgagaatgaatcagctacaaatatcagcagtgctacagaagtgaccgatgctcatctggaggtagctgctggtggctcatcggacgaatcagctaatcaatcaaacgcagctcaagaagaaggcagcgctggcgtggaaaatatctctaccaaccatgcatgaaataatactgtcgattttgcaacgagtggcaactctgttttgcattctgatttaaaggaaggtgtatttggaagggttatacatacatcatttgctgcccttgttggaggccatactttttgcagtttttgaggtgagtggaagagttaaactaatgtgtaagttatttggtatagagagtggaacgatagtggagattaaaaggatatacagttgagcttgagactttcgagtcgtttggcttgtatacttgcatcacatatgcaggctggtattccattgtgattcaatggagtgaatttggattttgagcctaaggtttaacttttttgggttgaaactttacctccatttcagaggaaacattttgaaaatgtagatttagtgcttggctggtatccagagtgattgtgctttgctgattttgttatacttatctaggcatattgattgttttaaattattttttctttttgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="31187" stop="36475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31487" g_stop="31505" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31506" i_stop="31679" i_length="174">
            <donor d_prob="0.996" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31680" g_stop="32214" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="554" r_length="535" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32288" g_stop="32441" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="708" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32606" g_stop="32696" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="799" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="32697" i_stop="34730" i_length="2034">
            <donor d_prob="0.817" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34731" g_stop="34817" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="800" r_stop="886" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34818" i_stop="35399" i_length="582">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35400" g_stop="36183" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="887" r_stop="1670" r_length="784" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U319748" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>1670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31487" e_stop="31505"/>
          <exon e_start="31680" e_stop="32214"/>
          <exon e_start="32288" e_stop="32441"/>
          <exon e_start="32606" e_stop="32696"/>
          <exon e_start="34731" e_stop="34817"/>
          <exon e_start="35400" e_stop="36183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGTTTCTGTTTCTCAGGTTTATTTATAATCTAATGTTGATTTTTATTGTCTAAAGTTTCAATTTTTATTTAGTTTTGCGTACTTTTGATGGCTAAAATGTTTACTGTATTTATATTTATTATGTTGATATGAAGGAATTAAAAGGGGTATAAATGATTAATTGGTGTGTATATATGTTTTTTGTGAATAGGGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATGGTAAGTTCGCTGCTCCATTCTTTAATAATCTAGTTTGCTAGATGTTACTGATTTTATTGTTGGTTCCTTTCAGATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAGGTAATTTTCAAAGCTATGAATGTAATTCTTTTCATTTCCCTTCCCTGTCCCCCCTCCCCACCCCCAACCCCCCCTTTTTTTTTAAAAGAAATTTCCTTCTTTCAATTTATATGATCTTTTGTGACATTTATATAACGAAGTTCCTTTTTTTTTTTGTGGTTCAGTGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCGAGTAAGTGATATCCCTATTTCTGTAGTACGTATTGGTTGATTGCTGAATCGGCCTATATGATAATTTGATAACACATCATTGTCTTTCCTTTCCTATGTTGATATGCTTAGGACTATGTATGTCTTTTTTTTTTCTTCAAATTATTGGAACACTTTTTGTTTGCTTAAGACATGATCTGTGTGAGTGATTGACTTTATAATCATGATCTGGCTGTGATTATCCTTGTATTCTCTTTGATATTTAGCTCAGCTTGCTTAACTAAAATCATTGATTCTCAGCATAAAGATGTCACAAGTTCCTGAACTCATATGCTGAGATCATTTGAGCTAGTGAATTGCATATAGTAATTGTCAGGTGCTTGGAGATAAACATATGAAACTAGGTCATGACTCACAAAATGCTCTAGTTGAAATTGAGTTCTCTTTGAATTATTCAGAAACTAGCGTATGCAATAACTGTTGAACTTATCTAGAATGGGTACCAAATCTATACAAATAGACTAAATTCAGGATTGGAAGTGTACTTTTTCAGGTTTATTCTGGTTTCATTCCAGCTACCTATCCAAATTTGGATATTTTCTGATCCTTTGTTCTAGCTTAATGTCTTTTATATTAGAGCTGACTTAATCTTTCCTTGAACCATCTATGAAATTTACTTTTGTAGTACAAATTGAAAATACTAGACGCGTAATTTGTCTAACTCTTTTAAAAAACTTATAGTTCCTTTGATTGGTGACTGAACACACAAGTGTGTTTCTCTACTAAAGGAAGTGATACCTCTCCCAAAGCATCTATGCCAGTCTCACATTTGCTCTTCCACCTATATGTTTGTTGTAGCTTCTGGAGGTTGTTAAATGCAGACCAATTGTAGAAAGAATTTTGATTGAGCTGTAATGTTCTGCTGTGTTACATTGTTTCATGTTGGTTTACTTTTGATGTTTATCAGCATAGTTTCTGTTTGCTGATGGATGTTATTGCAGTTGACAGAAATAACTTTCATTGAAGAGAAAATCTGGAGATCAGAGTTCCATTTGGGCATTTCTTCTTTATTTTATTTAATTTGTTGGTGCACTTACAGGAAGTCAAGGATAGAAAATGGGAATTGGTTTCCATTTCCTTTTCTATTCAATTTAAAATCCGTATCCAAATTTATATTTTATGGCAGCTGTTTTCCGAATTCTATAATTTTCAGTAAGAGCATTTTGATTTGTTCTGCTTGAAATTGTTGCACAAAACATTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACATTTTTGGGGATGAAGGTTTTGCTTGTGGTCTGTTTTGCAGGTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAGGTAATATAGCAATTATAACTTCTCTTGCCTTGATGTATTATATTCTAATGCTTTTAAGTGGGTTAGGAAAAAAGATGCTTGATAATATTAGATAACACTGCCTCTGTATTTTGAACATGTTGTATCATTAGTTAAGAACTTTTATCTTGTACTGCATAGTCTCCCTGTTTATCCTTCTCTTCCACTATTATCACATGATATCAAGTACACATTGAGGTTCCTGTAGTTGTAATTTCTTTACTGAACTGCCCGTGTGAGTTCTTGTGAATCAAATATTTCTTCATCTTTTTGGAAGCTTTTTTCATGAACTGAGAGAATCCACATCTTATGGCATCTCACATAGTTATGGCCTTCTAGGGTAAGATAAGTGAGACTCGAGGAGCCTAAAGTCCTTTGCCTCTAATATAACGTATTTGTTTTGGGTTGTCTTGTAAGGGTGCTGCATTTCGCACAACATAAACTAACTACTTGAAATTGATTTTTGGTTCTGCACCAACTGTTCCACTCTTGCTGTATCAGCAGATGGGTGTTCTAATCTGTTACTTGAAGTAATCTTGATGGTAGTGATGTGATTTTTTGTAGGATGACAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAGGTGAGTGGAAGAGTTAAACTAATGTGTAAGTTATCTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGAGCTTGAGACTTTCGAGTCGTTTGGCTCGTATACTTGCATCACATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAACTTTACCTCCATTTCAGAGGAAACATTCTGAAAATGTAGATTTAGTGCTTGGCTGGTATCCAGAGTGATTGTGCTCTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTTTTTCTTTTTTGCATCTCATTA</genome_strand>
        <mrna_strand>ATCGGTTTCTGTTTCTCAG..............................................................................................................................................................................GGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATG.........................................................................ATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAG....................................................................................................................................................................TGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCTATGCATCTGATTGCTAACTTTCCTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGACAGATAGTGCTCCAACAGCTTCCGTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCATCTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACGCAGCTCAAGAAGAAGGCAGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAGGTGAGTGGAAGAGTTAAACTAATGTGTAAGTTATTTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGAGCTTGAGACTTTCGAGTCGTTTGGCTTGTATACTTGCATCACATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAACTTTACCTCCATTTCAGAGGAAACATTTTGAAAATGTAGATTTAGTGCTTGGCTGGTATCCAGAGTGATTGTGCTTTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTTTTTCTTTTTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327676" ref_strand="+" ref_description="SGN-U327676        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>ttttttttatccaatggatacagacaaatgattgcatgcctaagtctagaatttggttcaatgtccaagtagattttagcactctttatgggatctttaaatagtggaattattacaaataaggctttggatctcgtcaatgcttttaggacttctgttattcctattgtccagattatttaaccgttttctcttggtggaattctatatgttcgagtattgattatggcaatactataagatgtctgacttttttttactttgagatttgcaattttgtcttttatagagggctttattataactaatctactgtaatctgcaatcatattatgtgttatgttacttgactattcatttgactgaaacatacatatctgcaaaatacacccaaaaaagccgtactaaatatcagtggcccccccataaatctatactattggattttaaaaatcagtagaatgttatatatgggatttaaacctgtgatctaaagcaatttcttaacctcctttgactcttcactaaactttttcttatagcaagggcatccaacaacttatgtgtaactaaaaaaattgcttttaccctatcaaacagtatacttttcaatgaaggggattcaattttcatcaacttagacttgccactgctaaatatgcccaatattgaaaccatatgtgtatgcaatttccatacttgtttcctcgtaatatctattgtttgttcttgacatgcttttacaatatagtagtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="33633" stop="34990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33933" g_stop="34690" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U327676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33933" e_stop="34690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACA</genome_strand>
        <mrna_strand>TTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329503" ref_strand="+" ref_description="SGN-U329503        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | subtilase family protein, similar to subtilisin-type protease precursor GI:14150446 from (Glycine max) | chr1:6990785-6993882 REVERSE | Aliases: T20H2.6, T20H2_6(evalue: 1e-46, score=182) genbank/nr: gi|21593457|gb|AAM65424.1| subtilisin-like serine protease [Arabidopsis thaliana](evalue: 9e-45, score=182)">
      <seq>catacgacataggagctggagaagcaagcccttcattggcacttaatccaggattggtctacgagactaacaccgcagactacttgcagtacctatgctcagttggctacgataaatcaaagataaaactcatttcaaatacagttcctgatgatttttcatgtcccaccaactcaagttctgaatccgtctcacaaatgaactacccttccattgctgtttcaaatatcaaagaaaatgaaatcaagaaagtaacaagaactgtaactaacgtaggacaagacgacgcaacatacacagcaagtataaaggcaccagttggtttggaagtccaagtgaccccgaataaattggtatttacaaataatagcaagaagttgagctatgaaatgtctttcaaagcttcatctaaaccaaaggaagacttgtttggatcaattacatggacaaatggtaaatacaaagtccgaagtccattcgttatatctactaattcacaaggtgaacactccaaaacagcagatcgcagatcaaactagtctagcaagtttgtatatactgtaatagtccatgtccatgtacacaactatgttacaactacatcatatacatgcttacatgaaaaaaagagcgaaataaagatcagatgacagactcgttcacagagtgagaatataatactacctccgattcaatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="42730" stop="44028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43030" g_stop="43727" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="699" polyA_stop="708"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U329503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43030" e_stop="43727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</genome_strand>
        <mrna_strand>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330536" ref_strand="+" ref_description="SGN-U330536        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G75880.2 | Symbol: None | family II extracellular lipase 1 (EXL1), EXL1 (PMID:11431566); similar to anter-specific proline-rich protein (APG) SP:P40602 (Arabidopsis thaliana) | chr1:28494111-28496116 FORWARD | Aliases: None (evalue: 5e-24, score=106) genbank/nr: Lipolytic(evalue: 2e-24, score=113)">
      <seq>caagttacctaattcaagattggtatatgtagatacatacaatgtgctacttgatgtcatcgacaaccctcaacgatatggattcaagattacagacaagggatgctgcggcacggggaaaatagaagttgcagagttatgcacatatacatgttccagtgatactgattatattttttgggatagttttcatcttacagaaaaagcatatagacttttagttcatcaaattcttgtccaacatttaaatagcttcttctgatatatattccacatgcataagtccaacaatatgtattttttttaaagtgtactcaaagagaaacagaacattagtcattctatgtactatcctcattgtttggtttgcaaataattatacaagaattgtattaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="47156" stop="46083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46856" g_stop="46777" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="46776" i_stop="46700" i_length="77">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46699" g_stop="46384" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="396" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="411"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U330536" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330536" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46856" e_stop="46777"/>
          <exon e_start="46699" e_stop="46384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTACCTAATTCAAGATTGGTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCTCAACGATATGGTACAATAATGTCTGTTTTTTGTTTTCTTGAATCGTTAAATGTACAAGATTTCTCATATTTTTGTATGATTGTGTAGGATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</genome_strand>
        <mrna_strand>CAAGTTACCTAATTCAAGATTGGTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCTCAACGATATG.............................................................................GATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345435" ref_strand="+" ref_description="SGN-U345435        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G75900.1 | Symbol: None | family II extracellular lipase 3 (EXL3), EXL3 (PMID:11431566); similar to anter-specific proline-rich protein (APG) SP:P40602 (Arabidopsis thaliana) | chr1:28502723-28504799 FORWARD | Aliases: T4O12.13, T4O12_13 (evalue: 2e-56, score=203) genbank/nr: Lipolytic(evalue: 9e-57, score=208)">
      <seq>cagcatgattgagtttttgaagttaaatagcattagttcttgtgtgttcttttccaccaaagctaaaaagtttacacttttatcaatgaagttctacttttacaagatttgttctttttttgtgttttgtataagtgtttgttatgcaataagtctacctcctaataagtctattccagcagtgtttgtttttggagactctattgttgatactggtaataataatggccttaaaactatagctaaggttaattatcctccttatggtaaagattttatgggaggaataccaactggaaggttttctaatggcaaagtcccttcagatttccttgtggaagaattgggaataaaagatcttttaccagcatatcttgatccaactttacaatccgaagaccttatcacaggagttaattttgcttcaggaggtgcaggatatgatcctctaacatccgaactcgctaaagtcatctcattagatggccaagtgatactattcaaagagtacatagtaaagctcacagagttagttggagaagatagaaagaatgaaatcttggcaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="48796" stop="46948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48496" g_stop="48162" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48161" i_stop="47569" i_length="593">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47568" g_stop="47438" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="466" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47437" i_stop="47350" i_length="88">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47349" g_stop="47248" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="568" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U345435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48496" e_stop="48162"/>
          <exon e_start="47568" e_stop="47438"/>
          <exon e_start="47349" e_stop="47248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCATGATTGAGTTTTTGAAGTTAAATAGCATTAGTTCTTGTGTGTTCTTTTCCACCAAAGCTAAAAAGTTTACACTTTTATCAATGAAGTTCTACTTTTACAAGATTTGTTCTTTTTTTGTGTTTTGTATAAGTGTTTGTTATGCAATAAGTCTACCTCCTAATAAGTCTATTCCAGCAGTGTTTGTTTTTGGAGACTCTATTGTTGATACTGGTAATAATAATGGCCTTAAAACTATAGCTAAGGTTAATTATCCTCCTTATGGTAAAGATTTTATGGGAGGAATACCAACTGGAAGGTTTTCTAATGGCAAAGTCCCTTCAGATTTCCTTGGTAAGAAAATTTTATATATTGTACAACTATGTTGCTCGGACTCATAAAAAATGTCGAGGGATGTGTGTTTGATCCTTCAAAAGTAGTACATTTTTTGAGGATGCGACACTGGTGTGGCAACATTTGTAGAGCAGCATAGTTGTAATGTCCTAAATTTCTATAGTTTGAACAGAAAGGACTATAAGTAAGTATTTTTTGGAGGATCCGATACAAGTGCAATTACATATCTATAGAGTCTTGAGCAACATAGTTGTAAAGTCCTATCTATCTATAGTTTGAATAGAGAGGACTATATTGTACATCTATGTTGCTCGAACTTTTAAAACATGTCGACTGGTGCATACTGGATCCTCCAAAAGTAATGCATTTTTGGGAGGATCCGACACAAGTTTGTAGAGTCAGCTATGTTTCTCAAGACTCTAAAACAATGTCGACAGGTACATGTTGGATTGTCCAAAAATAGTGTGTTTTTGGAGGATCCGACACGAGTGGAACAACATTTTAGGAGAGTCTGAGCAACATAGTTGCAAAGTTGTATCTATCTATAGTTTGAATGAGGAAGAGTTTTCTTAGTCTCTCTGTCTTTTTTTCAGTGGAAGAATTGGGAATAAAAGATCTTTTACCAGCATATCTTGATCCAACTTTACAATCCGAAGACCTTATCACAGGAGTTAATTTTGCTTCAGGAGGTGCAGGATATGATCCTCTAACATCCGAACTCGCTGTACATAATCTTTGTTTTAGTCATTGATCAGTGTGTTCTTTTACAAGCATTTTTCTTGTAGTTTCTGAAACTTAATGTGTATATGCAGAAAGTCATCTCATTAGATGGCCAAGTGATACTATTCAAAGAGTACATAGTAAAGCTCACAGAGTTAGTTGGAGAAGATAGAAAGAATGAAATCTTGGCAAAT</genome_strand>
        <mrna_strand>CAGCATGATTGAGTTTTTGAAGTTAAATAGCATTAGTTCTTGTGTGTTCTTTTCCACCAAAGCTAAAAAGTTTACACTTTTATCAATGAAGTTCTACTTTTACAAGATTTGTTCTTTTTTTGTGTTTTGTATAAGTGTTTGTTATGCAATAAGTCTACCTCCTAATAAGTCTATTCCAGCAGTGTTTGTTTTTGGAGACTCTATTGTTGATACTGGTAATAATAATGGCCTTAAAACTATAGCTAAGGTTAATTATCCTCCTTATGGTAAAGATTTTATGGGAGGAATACCAACTGGAAGGTTTTCTAATGGCAAAGTCCCTTCAGATTTCCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAGAATTGGGAATAAAAGATCTTTTACCAGCATATCTTGATCCAACTTTACAATCCGAAGACCTTATCACAGGAGTTAATTTTGCTTCAGGAGGTGCAGGATATGATCCTCTAACATCCGAACTCGCT........................................................................................AAAGTCATCTCATTAGATGGCCAAGTGATACTATTCAAAGAGTACATAGTAAAGCTCACAGAGTTAGTTGGAGAAGATAGAAAGAATGAAATCTTGGCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346358" ref_strand="+" ref_description="SGN-U346358        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G75900.1 | Symbol: None | family II extracellular lipase 3 (EXL3), EXL3 (PMID:11431566); similar to anter-specific proline-rich protein (APG) SP:P40602 (Arabidopsis thaliana) | chr1:28502723-28504799 FORWARD | Aliases: T4O12.13, T4O12_13 (evalue: 6e-41, score=164) genbank/nr: gi|26449364|dbj|BAC41809.1| putative family II lipase EXL3 [Arabidopsis thaliana](evalue: 5e-39, score=164)">
      <seq>aaatttccaaggaaaatacaatacaatgttgactcatatacaaatcttatggtagatggagcttccaattttatcaatgatttgtacaatatgggagcaagaagaatttggatatttgggcttccaccaatagggtgtttgccatcgcaaatactgcgaggtggaggtccatctaaaatttgtgtcaacgaatacaatcaagctgctcgaatagcaaataccaaattatcaaataaaattcattcattaaacaaaaaattgcctcaaatcgagcttctttatatcaatatttacgatcctctactcgatattatcgccaaacacaataaatacggttttgaagatgcattgagtgcgtgttgccaaggaaggaatgagtatttgttatgtgacaacgttacaaaaatatgcgaaaatgatgcaaattatttattttgggatagttatcatctcactgagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52070" stop="50479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51770" g_stop="51693" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51692" i_stop="51259" i_length="434">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51258" g_stop="51003" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="334" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51002" i_stop="50906" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="50905" g_stop="50779" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="461" r_length="127" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U346358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51770" e_stop="51693"/>
          <exon e_start="51258" e_stop="51003"/>
          <exon e_start="50905" e_stop="50779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAATGTAAGTATATATAATACCTATATTTCCCTCTCCTTTTTTTCACCTTGTGATTATATATTGAGTTTTTGGTGCCCCTGTCATTCATAAACTAGAGCATATATGTCCTTCACTCTAACGGAAGGCTAAATAGGGACACATAGCGCAATCTTATTCGTCGATAAGTGTCGAATCGGTGGATAAGATTATGATACGTGTATGTCGTGTTAGTACGAAGGATATATATGCTCTAGTTTTTGAACTGTAGGAACACCAAAGTTCCAAAAGTATGATGAAGGATATTTGCATATTATTTACGATTTTTTGGGATATATCTGTCATTTTTCCCTTTGAAGCATGAACTTAAATATAACCCAAACATTGAATCGATTTTATGATTATAATTTTATTTCAAATAATATATATATTTTGATTGTTATTATTTTATTCTTTTTTAGGATTTGTACAATATGGGAGCAAGAAGAATTTGGATATTTGGGCTTCCACCAATAGGGTGTTTGCCATCGCAAATACTGCGAGGTGGAGGTCCATCTAAAATTTGTGTCAACGAATACAATCAAGCTGCTCGAATAGCAAATACCAAATTATCAAATAAAATTCATTCATTAAACAAAAAATTGCCTCAAATCGAGCTTCTTTATATCAATATTTACGATCCTCTACTCGATATTATCGCCAAACACAATAAATACGGTACAATATTAAACACCAATCTTCTTCAATTCGTAGATAAATTTTACATCAATCATATTTTAATCGACTAATTTTTCTACTTACTTATAAATTTTAGGTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAA</genome_strand>
        <mrna_strand>AAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTACAATATGGGAGCAAGAAGAATTTGGATATTTGGGCTTCCACCAATAGGGTGTTTGCCATCGCAAATACTGCGAGGTGGAGGTCCATCTAAAATTTGTGTCAACGAATACAATCAAGCTGCTCGAATAGCAAATACCAAATTATCAAATAAAATTCATTCATTAAACAAAAAATTGCCTCAAATCGAGCTTCTTTATATCAATATTTACGATCCTCTACTCGATATTATCGCCAAACACAATAAATACG.................................................................................................GTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332339" ref_strand="-" ref_description="SGN-U332339        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G20120.1 | Symbol: None | family II extracellular lipase, putative, similar to family II lipase EXL3 GI:15054386, SP:P40602 Anther-specific proline-rich protein APG precursor {Arabidopsis thaliana}; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase | chr1:6975379-6977235 FORWARD | Aliases: T20H2.29, T20H2_29 (evalue: 8e-35, score=142) genbank/nr: Lipolytic(evalue: 2e-33, score=144)">
      <seq>aatctatacattttttttactgcataaaatagtaataatggctttattatgtgctgtttttataatgttatttatttcatgtgaagcaaagttgcaattacgtaaggacataaatataacggctctttttgcctttggagattcaattgtagatcaaggaaataataacaatttaattactcatgcaaagtgtaattttttaccttatggaaaagatttcatgggtggtaataatccaactggaagatttagcaatgccaggacaccagcagacatgttagttgaagattttgggattaagaagctaatgccagcttatctagattcaaatttaaaagttgaagatttaaaaactggagtaagttttgcttcaggagcttctggatttgaccttttaactcctgttgtcgcgtcagctttaccactatcagtacaattagcactttttcaacaatatatttggaagatgaatggatttattggtgaagaagcaacaaagaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="52899" stop="51539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52599" g_stop="52319" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52318" i_stop="52222" i_length="97">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52221" g_stop="52091" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="412" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51929" g_stop="51839" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="503" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U332339" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332339" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="52599" e_stop="52319"/>
          <exon e_start="52221" e_stop="52091"/>
          <exon e_start="51929" e_stop="51839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAGGTATACACACTATATAAAATGTAATATTACTTATGCCGAATTTAAAATCTGTATAACTCGTTTAACCATATGATCACTAATATTTTTTCTATTTCAGTTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCGGTAACTTCTTATTCTATCTAGTTATTTACATAACAGGAATTAACGACAGATAAATTTAGTAGCTAAACAAGTTCTCAACTAATTCCACTTCCTTTTTTTAGTGAATAATGATTACCTATATATTTTCTTATATATATTATTTTTTTATTTATGTAAATTAGTCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATA</genome_strand>
        <mrna_strand>AATCTATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAG.................................................................................................TTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCG.................................................................................................................................................................TCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327560" ref_strand="+" ref_description="SGN-U327560        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G75880.2 | Symbol: None | family II extracellular lipase 1 (EXL1), EXL1 (PMID:11431566); similar to anter-specific proline-rich protein (APG) SP:P40602 (Arabidopsis thaliana) | chr1:28494111-28496116 FORWARD | Aliases: None (evalue: 2e-49, score=192) genbank/nr: Lipolytic(evalue: 6e-52, score=206)">
      <seq>tctcatggtgtccaaagctactgaatttttccaagaattgtacaacttgggagcaagaaaaattgggatatttggaattcctcccataggatgtttgccatcacaaagaacattagctggtgggccaaatagagtatgtgccaaggaatacaatgaagcagcccaattggctaacacaaaattctcaattgccattgattcactatcaaaaaagttggcccaatccaaacttgtgttgatagatatctataatccttttcttgatatcattgtcaaccctcaaaaatatggattagaagaagtagagaaagggtgttgtggcacaggaaatattgaggtgacaatattatgtaataaattcagtggaacatgtgaagatgatacaaaatatttattttgggatagttttcatccaactgagaaaggttataggattcttgttgatcaaatattgaaaaaatatgtcaatagatttttgtagatgatgagctcaatcaagatcaagattatgtatcaccaaatttgtatagtttggatcaaaggtccaaacttttttttgttcaattaatagttcatttatacacatccaagtgtttatgttggaatctaataaaaaaaatattgttcatgtcaaaaaaaacaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="55519" stop="241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55219" g_stop="55186" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55185" i_stop="55021" i_length="165">
            <donor d_prob="0.964" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55020" g_stop="54765" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="290" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54764" i_stop="54502" i_length="263">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54501" g_stop="54155" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="637" r_length="347" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54154" i_stop="52833" i_length="1322">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.265" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="52832" g_stop="52799" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="671" r_length="34" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U327560" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55219" e_stop="55186"/>
          <exon e_start="55020" e_stop="54765"/>
          <exon e_start="54501" e_stop="54155"/>
          <exon e_start="52832" e_stop="52799"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAAGTAAGTATACCTTTGTAGTCGAATTTTAAAGGTGTCAAACATGAACCAGTCAGATCAATGAGTTTCAGATATCAAATGGTTAAATTGATAGTTCTTTATAACTAATTATCATAAATATTAATTTGCATTACATTTTGTGTTGATTCAATTTTTTTTTTCTTGAAGGAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATGGTACTATATACTTATCCTTCTATAAATTCATGATTTATTCTAAGGACGCCAAATAAATAGGTTGGGTTAAATTTGGACAGATTAAGATAAGCGCGCTAAAAATTGGACGAGTTATTGAGTTATCTAATATATAGGGATATTAACCGTTAGGATGATATGATGTAAATTAATTGTACATGTCTTTAGAGTGATCTGATAACAAAATTTTCCTTGTGTTCTTATTTTTATCAATTTTGTTATTGTGGATTATCTTTTTTTTGTAGGATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCATGTCAAATGGTTGGTAAATAGTGGTACCTACTTAGCTAGTAATTTACTAAGTAATTAATTTTTGCATTGTACTTGCCAATTTTGACTTTTCGGAGTTAGTTAAAAAATTTGACATAAACCAAAATTGTTCATTTTTGGAAAACTTAATAAAGGACAAAATTAACTTCATGCGTCTATTTGAAATTGAAATGTTTTTTTTTTTTTAAAAAATCTTATAAAAATAGAGTCTATGTGTAAGGTCTACATACACCTCGTTTTCCCTACACATCACATGACATTAAAAATTTTTTAGTGTTAATTAATTAACGACAATAACTTAATTTTCTCTAGATATTTCAATATTGTATCAGGTTCAAGGATTTTAATCAGTGAATCGATGCAATTCTATGGCTAAATGTTGATTTAAATTATGAAACTTTATCATTTCGGCCTTTAGGGCTGAAAATTGTGAGGTTTAATGTTTAAATAATCTCAATAGAGACTAAAACATAAGATACTTGTTACATGTTTGTAATGAGAGGTGATAAATATTTCGTAAAATAATTGATGTGCACACTATAATTGGCCTAGACACTAGGATTATCAATTTTTTTTCAATCATTATGGGTTGTTCCTGTTGTCAAATTAAAATGTGCTCCCGAAAGTCTAGTTTTTTATGATATGAAAGTCCATTTTTTTGTTGTTAGGAAATTTGTGTTTGTCAAAGTTTAGAATAATTGATTGAATGTTACTTTATATATACTTAAAATTATATTGAATATATTGTTATTATATATATGAAAAAACACTTATATGAGATTTAATTGCATGGATTTGTTTAATTAAGTCGTATTGAGGAATATTATAGTAGTTAGATAGTTACTTTACTTACTTTTCTATGTATAAAAAATTAAATATAGGAGTATTTGGTGGTGATTTAACTAATTAATCCAAATTCTTTTATCACACTTTTCTTGTTGATTAGCACGTTTTCCCTTCACGACTCTCTCTTGTTAACACAAGAATGTGTTAATTAGTTAACATGAACTATAATCGAAATCGAGTTTAAGTTCTATCCATTAATAACCTTTGATATATTTACACAATTAGATATTTTAAAAATATTTAGATAATTCTATTTAATAATACTATTCTGTAATAGAGAATAAACTATTAACATTGAAATATAATACCTAAAATGAAAAAGAGTGATCATCTATTATGAGACCTACTACTAAAATCGACATGTGGAGAGCCAATACACATTTCAAATTTACTTCTATCTTTGTATAGTAGAAATATCGTTTCTGAAAGATAAATATTTGAACACTAAATTATAAAAAAATTAACAGATATAAAATAAATACAACAATCGATACTATTTTT</genome_strand>
        <mrna_strand>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAA.....................................................................................................................................................................GAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATG.......................................................................................................................................................................................................................................................................GATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCATGTCAAAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAAAAAAAAAAAAAAACTCGAGGGGGGCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318709" ref_strand="+" ref_description="SGN-U318709        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (FYVE type) family protein, contains Pfam profile: PF01363 FYVE zinc finger | chr1:6971476-6974812 FORWARD | Aliases: T20H2.10, T20H2_10(evalue: 2e-149, score=525) genbank/nr: gi|18394823|ref|NP_564103.1| expressed protein [Arabidopsis thaliana] gi|13605833|gb|AAK32902.1| At1g20110/T20H2_10 [Arabidopsis thaliana] gi|16226228|gb|AAL16109.1| At1g20110/T20H2_10 [Arabidopsis thaliana] gi|23506043|gb|AAN28881.1| At1g20110/T20H2_10 [Arabidopsis thaliana](evalue: 2e-147, score=525)">
      <seq>gaatttgggcaagatacttatgggaaacgagctgaaagtggatatggtaatgatggttatggcgatggggtgtttgcttatcagggtagtaaagtagagccttatggggcacgagggactggttcaaagtcttcgacttggtcgtctagttttgatgattttgggaggccaattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaggagaaagatcactgggttcctgatgaagcagtttccaagtgcacagcttgtggatcagccttcaatgcttttgtgcgcaggcatcactgtcggaattgtggagatattttctgtgacaaatgcactcagggaagaactgcactgacagctgatgagaatgcaccagttgttagagtttgtgaccgatgtacggctgaggtttctcgtcggctaagcagcgcgaaggaaactgtcaatagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggtgtttgccagaatccattcctcgttagttcgcactgattttgatgttttccgtcaatggaaggaaagactgcaaactcttttctggtttttgtgtgttctcgtacattgtttcgtgcatctgttaatatttgaaccgtttgtgacgcgcctttggttggttgcttgatccttgtttcctggcaaggcaatttgctcatttgatttgtattagcaggaagaaatctaacacttttttttttctttacatggagaaaatataagtgaatttgattccagtaactcaagtttaaatcaatttgatttcttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72761" stop="64084"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72461" g_stop="72123" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="426" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="558" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68580" g_stop="68449" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="690" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="66574" g_stop="66509" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="756" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="66168" g_stop="66058" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="867" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="65777" g_stop="65685" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="868" r_stop="960" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="961" r_stop="994" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="995" r_stop="1062" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="64734" g_stop="64384" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1063" r_stop="1413" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U318709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1413</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72461" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68449"/>
          <exon e_start="66574" e_stop="66509"/>
          <exon e_start="66168" e_stop="66058"/>
          <exon e_start="65777" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64384"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAA</genome_strand>
        <mrna_strand>GAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG....................................................................................................................................................................................................................................................................................................................................................CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG........................................................................................................................................................................................................................................................................................GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336611" ref_strand="+" ref_description="SGN-U336611        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (FYVE type) family protein, contains Pfam profile: PF01363 FYVE zinc finger | chr1:6971476-6974812 FORWARD | Aliases: T20H2.10, T20H2_10(evalue: 3e-59, score=225) genbank/nr: gi|1246823|emb|CAA61964.1| hypothetical protein [Phoenix dactylifera](evalue: 2e-61, score=239)">
      <seq>aattgggtataattctccgaaagaacgttcatcagctccaactgcaaagatcgtcaaggcaattcccaaggttgatacgcagcaggatgcgaaaagtggtgttcagaagtttagggtgaagttattagctgaaagtggtggacagagtacccaggatgttctttgccagattggcttggatggaatccgcatgttggacccaagcactagccggatgttaagaatttatcctcttgacacggtaactagacttgaggcgacggattcatctacctttgccttctggtcaaaaagtgcagtggatatagaaccaaggcgtatcagactgcagtcgaacagttacacaaccagttccctgttagatacagtcacggctgcggttgtacagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaagagaaagatcaactggattgcaaagtcatgaagaccttgccaagaagcttcaggaggagatggagagaaaccgaaaaggatcatctggctctagacaagatcgttcggggaggatgaaagaggttgcttgccctacttgtacagtacatttgcaggttcaagttccgagctcaggttccgagactatagaatgtggggtttgccagaatccattcctcgttagttcgcactgattttgatgttttctgtcaatggaaggaaagactgcaaactcttttctggttgtgtgttctcatacattgttttgtgcatctgttaatatttgaaacgttgcctttggntggttgcttgatccttgtttcctggcaaggcaatttgctcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72591" stop="64193"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72291" g_stop="72123" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71020" g_stop="70934" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="256" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70439" g_stop="70308" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="388" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68580" g_stop="68457" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="512" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68456" i_stop="65731" i_length="2726">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="65730" g_stop="65685" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="558" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="65038" g_stop="65005" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="592" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100">
            <donor d_prob="0.988" d_score="0.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="64904" g_stop="64837" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="660" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="64734" g_stop="64493" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="661" r_stop="891" r_length="231" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U336611" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72291" e_stop="72123"/>
          <exon e_start="71020" e_stop="70934"/>
          <exon e_start="70439" e_stop="70308"/>
          <exon e_start="68580" e_stop="68457"/>
          <exon e_start="65730" e_stop="65685"/>
          <exon e_start="65038" e_stop="65005"/>
          <exon e_start="64904" e_stop="64837"/>
          <exon e_start="64734" e_stop="64493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAGGTGGGTCTCTTTGTACTGACTTTGGATGTCATTGATGATTGTCATTATTTTTGCGGAAGTTTTTGGTTAGTTACATTCATGAAGCATCTTAATATAGAACTGGAAACTTAATAGGAGTTGCAGTTGATGAATTTCAGCTCAGGGGTTTTTGGTATAAAGCAATATGCTTTTCTAGGATATGTTTTCCTAGAAGAAATCATTCTTAGTGTGTTTGATTTCTTAGGATTATGGACAATTGGAAATTACATTTAATCTATCAAAAAGAAAATGAAAAACATGTTCCACCATAAAGGCAAACAGCTTCCATAGCTTATGGGTGGAAGTCAGTTTCTTTTACTAGTTTCTTGAACTCGGACTCCATATCACTTATTTCAATCAACACTTAGATGTTCTTGAAAACCTTTATGAACAAAAACTTTATAATACCACTCCAATATCTTTTCCCACCAATTTGGTATCCAACCGAAATGATTCTGAATGTGGTTTTCTCGTATAAAACATATTCTACAGGAAATGTTCCCTGGAAAACATTCTTCCCTATTCAAAAGGCATCTGCATATTCCAGTTTCATGCCTTACCTGATGCTCCTCTGTTTATTTTGATGATTTCTGTCTTGACCAATTTCAGTTCATGATTTTGTAATATAATACTTAGCATCTTGCTATGAAATTTCTAAATTAGCATGCGCTTTGTTATATCTGAGATTGTAGCGCCGTGACATTGGATCATACCATGATCTAACATTTTTGTGTCTCAATTCTTGATTCTTGATGTTGTGTCATCTTTATTGAAAACCCTGCCATGATCTGTAAGTGGTACAGACTTCTCCTCAGGATGCAGTGTCCACTTAGCCTAATGAAGTTTTTATATGCTGTGTGTATTTTTGAGCCATTAAGATAAACAGTATTATATAATATCCTTTTGGTAAAATCTTCTAGTTATGTTTTGTGCTTCAACAAGATGGGTGCTTCCCTTTTTGGTATGTGCCTGTGTTGTGCTGTTAATAGGCTTCATGTTTTGGTGTGTTATGAATCTCTATCTATTGATTGATCAAGCATATAGCAGCATTTTAACTTTGAGTCCTGCTTGTGGTGCATTCCAGATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAGGTAAGTGTTTGTTCTTTCTCTCCACGTCCAACCATGTATGATGATAATACAATTTTATTATTTTACCTTCCTGATATGACTATGAAAGAGTTTACTCTTTTTATGATATAATTTTAATGGGCTGAAACTTGAAGGTTGACATTATTTAATGGTAATGCTAGGATGAGGGCATAAATTGCTACATGCTCAATGTGCAGTCAGATTCTTGTTTTAGAAGTATTTTTGGGGTTTTCAGCTTCGACCGTCTTTTAACAGAATGCATGAAGCTGCATGATAGTTTTGTTCATAGCAACATGGGTCGTATATTTTAGCCTCAATAGCAGGATTCTAATTCAAGATTCTGGCTGTACATTGAGAACCTGAATAATATATGCCCTCAACTTCATTAATGCGCCTTGGATTTTGTCCTTTACTTTCCCCCAAGATCTGGATTTTCTCCAGCTCTTTGAACTTTTGCAGAGCATCAATGAACTGGTCCTATTTTTCTTGTTTAGGCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAGGTCAAATTTGTTTTTCCATTTTTTTTTTTTTTTGCATTTGGGATCTAATTTTGTTTTATCTTCAACAATTTAGTAATTGATGTTTACACCAACCACTCCTCAGTCCCAAGCAAGTTAGGATCAGTTGCATGAACTCTCACTGCATGTAGCCATTTAAGCTCATCTTAGTCTGACATTATATTACATAACAATAAGAAGTTCTATAAGTTCTCTACTGATGTATAAATCTCTAACATGACTAATTGACTCCTAGGAAATATTGAACCTAGAATAAACATGGTAATATGACAAAAAATTAATAAACTTACTGGTGTTGCATGTATTTATCTTTTCTTCCATTTATGTCTCATTTCTCTAGGTATGCATGGATTCCAAGATATCGTAAGTCATTAGAGAGAATTTCATTCAATGTGATTTTAGATCTATCCTGTTTCAGCATGGTTTCACACCTACTGACCAGTGCGTTTGGAGGTCTATGTAGGACATGACCAAGCCATCTCAAGAGACTTTCTCATTTAATATGTGTGCTACTTGCACTTTTTTTCAGATGTGATCATTTGTTATCTTGTTTAATCTTGTATGACTGCATATCCATCTTGACGTCCACATCTCTGCGATCCTCATCTATCTGGGGATATCTTGGTTTGTTTTTGTAAGAAGGTAATAGTTGTACTTTGGAGGTCCAACATTCAATATGATATACCATTGCTGGTCTGATAATTGCTTTGTAGAATTTGTCCATTTAGGTAGGTATCCTTCTAGCACATAAATCTCCACTAGCACATTTTTATTTTCCATCATGTATTAATTGTTATGTGTAACATGACATCTTCATCTTTCATGCCATTCTCCCTCAGCCTAGTATTTTGCATAAAACCATCTCTTTTGTCCTAGAAGTTTCTCTGAGTTAAAATCTATAGTTGTTTCAAAAGGTTCTCGTCAGTGTTTTGTGAACACAAGATCGAAATTTTTTCCTTTCATTGGCCGAATGTCTTCCATTGATGTCACACCAAGGTAGCATTACTATATAAGTTCCATCATGTCTTTAGGCATTTGTTAGGGCTTCCCAAAGATTTTGTCATCCATTTAATATAAAATGGTTTCTCTTTGATACACCAAAAATACAAATATAAAAGCTAGACTCTTAACTCAAGAAAATGTTTTCTCTACTCATTCAAAAGTTACTATGTTCCTTTCTCATATTAACTGATAAGGCTAAAAGGTACTGTCTCTTTTGTTGCTACTTCCTTTCCACCATCCAAATTGCTTGTCTACCTACTTGCTAGCGGCTTGTTAATGTTCCGCGCAGGAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTTTTTTTTGAGTCAGTAACATTTGTATTATTATAACGCAGCACTTAGGTAGTGCTAAACCCCTTTACAACCAGACTAAGTATAGCAATATATCAAAGGACTCCCAATCCTAGCATGATTCTAACACATCTAGAGTATTATCTGCATCTACAGGGGAGTTCCTTGTACACCAAAAACACAAAAGCAAAATACAATCTGTTTTGATTTTCCGTACTGTTCTACTCCTGTCTTCAAAACACCTAGCATTTCTCTCCTTCCAGATGGTCCACCACATACAAGATGGTATAGTTCTCCAGTAGCTCCTGTTTATTGCTCCCTTCCCAGCTTCTTCCCAACTTGATAGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCATATTTTTTCTCATCTAATTTTGTTTCTATTTTCTCGTATTTACTTACTCACTTGGACAGACTTTTGACTGATCTTCGAGTCTCTTCACTTAGTTATGCTGATAGAGCTGTATTTCCTCTTTAATTTCTTCAATATTGCCGAAAAGACTTGATTTCATCTTATTCTTTCATTTTTATAAGTGTTCTTATTCGTTTTCCTCTAGTCACAAGTTTATCAATCTAAAACATCTTCAAATTGAATCCGTATAGATGCAGCTTGAAAAATATAGTGATTGGAACTCATGTCTGCTGCACTTCAAATTTGCCTGAAGTTTGTTTTTGGTAATTGTAATGTTTTTCTGTAATTCATATACTGCTAAAAGAAAATCTGTTAAATGATGTTCATAAGTTGCAAAGAGAAAAGGTTTTAGTCCTTGGTTTATTACTTGCCATAGATATTGGAGAGAAACAAAAGGATTGCGCCGTAAAGTTCATAATAATTAATACTAATTTCTGCTCCAGTATTTTTGTCAATAGCTGGATTGAGGTTTAATGAGTCATGTGCTGGCATGCATATGCCGCTTAGAGAAATAATCCGCCTTAATGTTATTGAGGTGCTGGGAAGTCTGTCATGTTTTAGTAGAACCATTAATTTTCATTAACTCATTACCATTTTGTCAGGTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGGGTATGTCTTGTGCTTGCATATATTAATTCTTCTTCCCTTTTGCTACTCTTTCCTCTTTTGACCGTTTGCAAATATAAGTTATCCTGATATTTGGTTGCTTAATATCTCTCCCCAACTACTTATCTGAAAAAGGAAAAAGAACATGTCCCAAAATAGGGAAAGAAAAACAAATATGGAAAGAGAACTTGTTTATACTTGGTGTTTAGTAATAGAAATTTGACTTGTCCAGAAAATTGTTTATGCATTTCTTGTTGTGCATTGCTTTATGTTTTGCATTATTTTTGTAAGTTTAGGGAACTCAAAATGGGCTAGAGGAATGACATCTAGATTTTGTTTTCAGCATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACGGTATGAATGAACTACCATCTGCACCTTCTATGACTGCATTTTGTTCATTCCCAATTCTGTTTTTGACATTTTGTTCTGGTCCCCTTTTCTAAGTTATCTCTTTTGGGTTTAAAAAAGAAATTTCATAAAATCTTAGTTCCTACTTTCTTTTGATATTTTTTGAATAGTACTGATTTTTTCTCATGTGGTAATTCATGGTTACATGTGCACTAAAAATTGCTACTTTGCCAAATATATCATGATTTCATTTTGTTAACTACATCTCATGGATTTTCTCCAGGCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAGGTGCTTTACTATTTAAACTTCTCAACACTTCATGTTTTTCTGAAAGCTTGCAGAAGCAGACCCTGCCCACATATTCAACTCACTTTTGACATCTATGAGCGCTCTTTGTAATTTAGAAACCAAAAAAGCAAAAAAAGAAGGAAAGAAAAGGAAAAACCCAAAACTAACTTTTCGTCAGCCTTGTTTTGCGTAAAGAGGTTTTATACTCCCTCTGTCTCAATTTGTCCGTCTTACTTTCCTTCTTAGTCCGTTTAAAAAAGAATGTCTTTTTCCTTTTCTGGGTATTCTTTAATTTCAACTTTCCACGTGACATGTTTAAGACGACAAGATTAAAGGACATTTTGATACATTCTGCATATCTTTAGCTTAAGACTACAAGATTTGAAGGTCTTCTTTATTTTCTTAAACTTTGTGCCAATATAAAATTCCATCTGTATGATGGCCACTATGCCTTGGTAATGCTTTTTCATGTACTATGTAGTTACACCGTTCTAGTTTAGGTTCTTGCATCTGGTAGTTCATTCTGGTGAATGTTATTCATCATTTTGATGGAAAGTGATTGTAGTATTCCTTTACACAATGCTTTATTTGTTCCTATTGCATTGCTGAACTTTGCTGATGTTTAAAATTTGCTTGTTATTCTCAGGAGGAGATGGAGAGAAACCGAAAAGGATCATCTGGTGAGTGTTTATCTGCTGAAATATATATGCTTAGTATTCGATAATGAGCTAATTCTTGACATAGTTTGGTTGCTAGCTCATGAAGTTTTTCCGGTTTCAGGCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAGGTTAATAATCTTAGCCTTCCTTGGCTATTTGAAACCTTGAAGAGCTTAAGACCACTATTCACATTTTATATTGACTTCTTCTTTACAATACTTGAACTGCAGGTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTG</genome_strand>
        <mrna_strand>AATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAAGAGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG....................................................................................................GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG......................................................................................................GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGGGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCTGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGG---TTGTGTGTTCTCATACATTGTTTTGTGCATCTGTTAATATTTGAAACG--T-T-----GCCTTTGGNTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328615" ref_strand="+" ref_description="SGN-U328615        Tomato 200607 #1 [3 ESTs aligned] genbank/nr: gi|48210057|gb|AAT40556.1| hypothetical protein PGEC542.21 [Solanum demissum] (evalue: 5e-19, score=72.8)">
      <seq>agagtgtcgacaatcttgctaggcattgtccatcgtatgcctctgaaattaatcaaaatcttccatagttggccagtgattctccaatgcaaaatcaaacagtgcgggactaagataatgttcctctttcttaggttttcatgtatcaagacagcttcttttgctagaagccatgagaaacatgccaccttcaaaggtgctttggtctccatatttgtttccatggccatatgtagttctgtgccactgtcgagttcagaagtttgtaccctgaacttactttgtatgcccttttgttttcccgattccaccatagtctgtccaccccattcttcagtccttgaaaagcttcaaggattttgaagaactcaatcagtctaggaattttccaatcattcaagtttcttgtaaaatttaattcccagccttggagcgctcacatgtcagctattgttctgtcctgacagataactaaatcaaacagatcagggaacttctctgcaagattccaattacctaaccacctatctttccacaagatggttttattaccatcacgacatcacctacactaatggtagtgtggttacctaaaattgtccaccagtttctgatagatctcccaacagtgacatgataagggttgtttgcttcttcagtcatccacccatccagttctccatactttgttgtaatcacctttttccatagagaagttgtctcatgggcatatctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="68271" stop="66934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67971" g_stop="67234" g_length="738"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="738" r_length="738" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U328615" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328615" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67971" e_stop="67234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCA</genome_strand>
        <mrna_strand>AGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCCAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAAGTTGTCTCATGGGCATATCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336612" ref_strand="+" ref_description="SGN-U336612        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (FYVE type) family protein, contains Pfam profile: PF01363 FYVE zinc finger | chr1:6971476-6974812 FORWARD | Aliases: T20H2.10, T20H2_10(evalue: 3e-10, score=63.2) genbank/nr: gi|18394823|ref|NP_564103.1| expressed protein [Arabidopsis thaliana] gi|13605833|gb|AAK32902.1| At1g20110/T20H2_10 [Arabidopsis thaliana] gi|16226228|gb|AAL16109.1| At1g20110/T20H2_10 [Arabidopsis thaliana] gi|23506043|gb|AAN28881.1| At1g20110/T20H2_10 [Arabidopsis thaliana](evalue: 3e-08, score=63.2)">
      <seq>cattatagttatgtgaaagngagtgtgtgcacacacatgaacccttacatatactgcctgaagatagagaaggatttcacatcaaacagtatatgcattcaggggaggaactagtaacaaacaagggagttcaaccagatccctttcattggaaaattatactgtgcaaatagggaaaaggatttttttgttgttatatattaactgttgaatttctttgacataaggtcttagtggtcgaggggttcaacatttgctttcgatcagaaatttagatcccaaataaggcatgctagtaaattttttagatcccttgtataagtttctggttctgctggtgtatgcaatagtacacagaaagagaccaacacaatatatgtgaacttcttgaaaataactttttcttttccttcaagcagttcaaggagatgggtggaagaataatgtcttctgaatctccaaaggtggcagaacagcctactgagaagaagaaaggtcttactgattggattaatatagtgaagaccgtcaatgaagagaaagatcactgggtaacatcttttattttattttgttttcacacgcctcatttttacatgatttaatgattagctacgactatactttctcgttcaacattttttaaaaaaaaagagtgattctttcttgtcaattttttctcaccttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="69290" stop="68010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68998" g_stop="68310" g_length="689"/>
          <reference_exon_boundary r_type="cDNA" r_start="2" r_stop="690" r_length="689" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U336612" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68998" e_stop="68310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAG-TTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAA-TTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTT</genome_strand>
        <mrna_strand>ATTATA-GTTATGTGAAAGNGAGTGTGTGCACACACATGAACCCTTACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAACAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGCAAATAGGGAAAAGGATTTTTTTGTTGTTATATATTAACTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTCGAGGGGTTCAACATTTGCTTTCGATCAGAAATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTTAGAT-CCCTTGTATAAGTTTCTGGTTCTGCTGGTGTATGCAATAGTACACAGAAAGAGACCAACACAATATATGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAAGAGAAAGATCACTGGGTAACATCTTTTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATTTAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTAAAAAAAAAGAGTGATTCTTTCTTGTCAATTTTTTCTCACCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346630" ref_strand="+" ref_description="SGN-U346630        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (FYVE type) family protein, contains Pfam profile: PF01363 FYVE zinc finger | chr1:6971476-6974812 FORWARD | Aliases: T20H2.10, T20H2_10(evalue: 2e-22, score=103) genbank/nr: hypothetical(evalue: 1e-20, score=103)">
      <seq>tttgaatcccacggagcttatcaaaatccagttcattctcagcctcaacaaccttattatcctccttacgatcaaccccaggctgctcctagttacaatcgtagtaccactccgaattcttcgtatccttcagtttattcaactccaaattatgatgatactgggaagtttgatcaaagtggacagtattttgatgaacctgtggataagtatgggaattatgggtcggggagaggtgaatttgggcgagatacgtatgggaaacgagctgaaagtggatatggtaatgatggatatggcgatggggtgtttgcttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="72998" stop="72081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72698" g_stop="72381" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U346630" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>318</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U346630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72698" e_stop="72381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCATAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATAATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGTTCGGGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTAT</genome_strand>
        <mrna_strand>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCGTAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATGATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGGTCGGGGAGAGGTGAATTTGGGCGAGATACGTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGATATGGCGATGGGGTGTTTGCTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317735" ref_strand="+" ref_description="SGN-U317735        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:16863378-16865507 FORWARD | Aliases: MJC20.26, MJC20_26(evalue: 8e-114, score=407) genbank/nr: gi|15238304|ref|NP_199030.1| expressed protein [Arabidopsis thaliana] gi|9757960|dbj|BAB08448.1| contains similarity to glutathione-S-transferase/glutaredoxin~gene_id:MJC20.26 [Arabidopsis thaliana] gi|20466187|gb|AAM20411.1| putative protein [Arabidopsis thaliana] gi|21593815|gb|AAM65782.1| unknown [Arabidopsis thaliana] gi|24899835|gb|AAN65132.1| putative protein [Arabidopsis thaliana](evalue: 6e-112, score=407)">
      <seq>aagtttgcattttccagatcttcggaagaggaaagaggatcgccggaatgaggagagtcagtagaatcgccgccttgtaccgggcagtcgacggtgcagccgccatggaggtgccacagcataggatgtctacggcggctcagtttagcacgagcagcaacaaatcatctaccaggtctaactggttattcaacaatttgctcacggatctatctgctagaacctcagctcatgctgttgctggaacaatgcttttctcggtggcggctaccacgttgaccgaggaagttcacgctaaagaagtagtgccaccggaattacgcccaaaagatcttgtcctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtgggtggatgatcacttggtgcacatgttatcacctaacatataccgaaatacctcagaagctcttgaatcgttcgattacatcactagtcatggtaatttcagctttacggagagaataactgccaagtatgctggagctgcagccatgtattttgtttcgaagaaattgaagaagaaatataatattacagatgagcgtgcagccctgtatgaagctgcagaaacatgggttgatgctcttaagggccgagattttcttggtggctctaaaccaaacttagcagatcttgctgtatatggcgttttgagacccatacgctatctgaaatctggtagagacatggtggagaacacacgtattggtgattggtactctcgaatggaaagtgaagtaggcgtgtctgctagaattcaagcttaaatgacatctattggtcaatgggcaaatcacattcagggacagtttttgacactagttgattacagttccgataaagaacattacttccaagccagtgacaaattattaatatataaagaagtgcactttcacaaagttttggtagttagatacaaaataaatttggatgtgggcttgttaccattctacattaacttattcttttggatgtaagttctatttgaggtgtgctgagacaatacttgcagtttacaccattttttacccaatggtgtaaaaactcgtcactttcatgtgctaattttacttctgattttgtccaaatacaatacattgaactttttcccccaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78506" stop="73937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78206" g_stop="77826" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="76543" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="516" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.125" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76274" g_stop="76196" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="595" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76010" g_stop="75916" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="690" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="75010" g_stop="74843" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="691" r_stop="858" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74748" g_stop="74237" g_length="512"/>
          <reference_exon_boundary r_type="cDNA" r_start="859" r_stop="1370" r_length="512" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1371" polyA_stop="1381"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U317735" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1370</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78206" e_stop="77826"/>
          <exon e_start="76677" e_stop="76543"/>
          <exon e_start="76274" e_stop="76196"/>
          <exon e_start="76010" e_stop="75916"/>
          <exon e_start="75010" e_stop="74843"/>
          <exon e_start="74748" e_stop="74237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATGGTAAGGTTTGATTGCAGTGACCTCTTGTCAATGTTCTGGGATGATAATTTTATTCTGTGCTTTTCTTCTTTCATAGTAATGGCTTCAAAATAAATTGTCTAGCTTTCTTTAATCCTACCTTTTGCAGTAAAATTTTGATGCATATGACTCATTAATTAGTCCAGAAAAAATGTTGTCTCTTTCAGTGTTTTATCCATCTTATTAGCATTCAGTTAATTAAGCTGGGGTAAACAAGTATAGTTGATGTAGGTAATACTTTGCTGCTTCTTTGCTAGACTTGATGTTGTCCTGCCTGATGGTATCTCTTCTTCTGTTACAACTTGAACAGTGTGATTACATCCATTGTCTGACATTGTGCATTTTAAATTTGGTCAAGAATTCAAGATGAAAACGTGTAAAATAGAATGCTACTGTTTTGTGATTTGTATCCAGGGTTATGTCCTCTATAAATTTGACCAAAAGCAAGTGTTACTTGCTCAGTGTGTAACTATTTGTGGTTGTTCTGTTTAGCTGAATTTGTCTTGTTCCATTGTTTTCTTCCTTGCTCGCTGTGTTTTTCTTATGTATTATTTAAGTTAGGCTTGATAAAGTATCAGAACCTAGATTGTAGTGGATACGAGAAAGTGTGGAACTTATTCTCAGTCCTTAAACAGATAGTTTAGAGAGTTCTTTACTTGATTCCCTAAGATTCTCATAAATATTTTTTCAGTGTCTACATACTAGCAGCTAATATATGGTAGAGTTTTGGTTGGCTTCCTTAAAATCTCTGTTCAACATAGGCTGATTGCAAGTCTTGTTCTGCTTTGTCTACCTTCATATTAGTTAAAGCCTGGGTGTCTTTTAGAGCTATGTTTTCCTTTATTTACCTCTAGCTCAAGTCTGATCTTATTTTATACTAAGGACAGGTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTGGTCTGTCCCAATTTCCATGTCTCAAAATCGATTTAATTGATAGTTTTTGCATCAAATCCTTGTCATATGTTTAATTCTTTTTCAATCTGAACAGGTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</genome_strand>
        <mrna_strand>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG............................................................................................................................................................................................................................................................................ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA.........................................................................................................................................................................................GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG..............................................................................................GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336256" ref_strand="+" ref_description="SGN-U336256        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:16863378-16865507 FORWARD | Aliases: MJC20.26, MJC20_26(evalue: 6e-26, score=114) genbank/nr: Glutaredoxin(evalue: 3e-25, score=118)">
      <seq>cctttatcagtatgaagcttgtcctttctgtaacaaggttaaagcattcctcgactactatgacttaccatacaagatcattgaggtcaatcccatcagcaaaaaagaactcaagtggtctgattataagaaagtgcctgttgtgttggttgacggtgaacagatggtgaactcatcaggtacttattatcatcaatacatttacagctattatgcaggtacaatgcgatcaaaagtatttaatttttttacacaagtaattgcaagatgcatctcgactgttggtaaaattaattgaagtcctattcatttggagtgttagtaaaataagataactatatctgcattaaagatggatagaatggattacagaggatctggtttatacttgtctcttctatggttacttctaaatacttttcctttgcacttttctatggataatagacattattgataaattgtacgagaaggttcgttctggtgattctacatttgatgctgatgaagagagcaaatggcgcaagtatgcacttcttcttccatttatgacttttccttagcgttttcctcttaagataaatgatatttgtgaattaagtaatcaagtcagtaagtgatgtggcaaaattagcgtttcttaattgaagccttttgctctttgttaggtacttgggtcttatctaatgatcgtgattctcacaatgcangtgggtgggatgatcacttggtgcacatgttatcacctaacatataccgaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="78169" stop="75658"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77869" g_stop="77826" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76677" g_stop="75958" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="764" r_length="720" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U336256" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77869" e_stop="77826"/>
          <exon e_start="76677" e_stop="75958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAGGTATTCACTTTTTAGCTATTTTTGTGTTGCCCGTTTGGTTTAATTTGTACTTACTTAATTGTGCTGATGTGCATGATTTGGAAATGTCTTAGCTCAACATATAACGGCAGCTAGTTATTTTTGTCCTGGAGCCTATAGATTTATTAGCACGTAGCTGCAAGGATTGCGGTAATAACAGAGAGAAAATTCAAGATGAAAAAGAGAGCAAGTGACTATGAAATTTCGTTGGAACCTCACAGGATTTGTATTTTAACTACTCTGCGAAACAAGATTTTTACTTCCTTTTTTCACTTATACTTTTGGCTAGAAGAGAATCTAGTTTTGGCTAAAGAACTTTTTTTTTTCAAATGGAAAATTGAATTTAGAACTATTGCTCTCATACTTGTTTCCGTATCCACCATAGTGCAACCTAGCTATTTGAGTTCATTTGTGATTTGTCAATAGTTGGAGATGGTTCATTGACAATATGATAAAGAATAGACTTTGGACCTAAACAATCTTAAAAGCTAGTTCATGATGGGAGACCAAGTGATCGTATCCCCACCAATGTGGGAAACTCATCAGGCCGCACGCCTACACCTAGAACTGGACATCTGGAGCACGGCCAATATAGGACGGAGCGCTGAATATTGGAAACAATAAATTGGGATAGTCCTGCTTCAATAACATGATAAAGAGATGAACCCTTACCCTAACTCAATCCCAAACTAGCTCATGAGCGGATGATTGCCCATAAGTAGACCAAGTGATCCTATTCCCACCTATGTACGATACTTGACACAATAAGATAGTAAATATATGGTAACAAGATTCCTAGAATCTTCCTAAACAATATATCCAGCATCTCTAATTCCCACTAAGAAGTTACTCTCTCTCTCTACAGTATGCTTCATCTCAGTAAACTATTTAGTGTATACTCATATTCTTGGTTGGAATTTGCTGTTGCCTAAATACTTTTGATTTCTTGATACAGAATGTTTTCTGAAGGTGTATTGACTTTTCTTAAAAATTCTCTCTGAATAGTTGTATTGCCTGCTTGTTAACGTTAATGATTCAAAACCGTGATCCCTTCTTTTTTCCCGCCCTTTATTATTTATTATTAGCTGGTATGCACCATAGTCCTTTACTCTGGGTTTTTTTCTTTTCAGCATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGT-GGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATA</genome_strand>
        <mrna_strand>CCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCTTAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCAC-AATGCANGTGGGTGGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334787" ref_strand="+" ref_description="SGN-U334787        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aatcggccgaattggtttattcatcaccgcctctttcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcaaatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcnccnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79407" stop="80591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79709" g_stop="80293" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="599" r_length="585" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="600" polyA_stop="645"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U334787" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79709" e_stop="80293"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATTCATCACCGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTT</genome_strand>
        <mrna_strand>GTTTATTCATCACCGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAAATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCNCCNN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314106" ref_strand="+" ref_description="SGN-U314106        Tomato 200607 #1 [29 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:6969098-6970947 REVERSE | Aliases: T20H2.11, T20H2_11(evalue: 1e-08, score=58.2) genbank/nr: conserved(evalue: 4e-09, score=65.9)">
      <seq>cgcctctttcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagagggaaaagaaagaaaagaaaagagaagagaagaaggctaaaaaggagaagagtaatcttggatttggcaaggccactcatgagtccaaagggaagtacttgttcaaatgtttcgaagatgaacctgagcagttggagaggagcaatctcactgaggaacatgagcctgctgtgtgttcacagaattccagctgctcatccgacagcacccagaacagtaataaaaggaagaggcctacttcaccttcaccttcacgaggtggcatacaggcgcatggtagcattatcagaattagattgtctaaaaagggtgtgcaaggtgaaatatcagtatccaaagagaagcacttgccaaaacctgctcaacaagttgcggaagttactgtcaggacatctgccgaaagagccaaccctttgttgaaaactacaaacaaacgaagttgtcctcctcctgtagcagtttcagagccaagtacatccaattgtgggtgggttgaccgtgtggctgaagacaacgcaactccatcttgttccaaagtgcacgagaacagcatagagtttcagtacaagaatttgattgagaactggcttccaccaagtctgccaagtgataatctagatttggaggatgatcaatcatggctgtttcaaagaaaacctaagcaagctcgagttgaggaaaaaaacttaggcggcggtgacaaaacttgtggaagctgcagttcattgtggcagcagccacgggcacaataccttcctgatgttgagttgtatgcattgccctacacagttcctttttgaatcacataaccgtgtgtatagaagatgttttagctggatatactgctcagggaattttgtagctcttctctgggaactgatgtagtttgaacaggatttaggcgcgatgacaaaaatgttcttttttattttttagctgccagttgctatcttcagaaatccattgttctacatcaatgaaaatgatcaatatagtattggatattttctttctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79422" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79722" g_stop="80027" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80028" i_stop="81318" i_length="1291">
            <donor d_prob="0.936" d_score="1.00"/>
            <acceptor a_prob="0.967" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81319" g_stop="81643" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="631" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81737" g_stop="82477" g_length="741"/>
          <reference_exon_boundary r_type="cDNA" r_start="632" r_stop="1372" r_length="741" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1373" polyA_stop="1387"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U314106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1372</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79722" e_stop="80027"/>
          <exon e_start="81319" e_stop="81643"/>
          <exon e_start="81737" e_stop="82477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATGGTAGTTCTTTCCCTTTATATATAATACTTACTATTTTGGTCTAGTGTTATGTTTTATCTGTTGCTAATCTGAAGTTTTGCTGCTCGACAATAGGTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</genome_strand>
        <mrna_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG.............................................................................................GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U314107" ref_strand="+" ref_description="SGN-U314107        Tomato 200607 #1 [23 ESTs aligned]">
      <seq>cgcctctttcaatattctgtgagagacgccgtaacctaattctagggtttccagaaatttttgattctgcgattcaatcacaagtaatcgtttgtatcgcgccaaatcgatctgaaatctgaaccatagtgttgtattttttgcgatttatttttgttttttggtaaagaaagggagggaagtctcagatctgaaatcgaaaagggatttgtctgtgtattgaggatgtctcggtgcttcccatacccaccacctggctattcgctgaatagatccagcaatgaagccttgatcgaatcgattaaggtttgttgaaacaaagagcacttgaatttatgtgtttacgctcttgttgcctgatataatctagcagggatctatactctatgtaaatctgtaaggaaaatttgtggttttcgtgggttgtgcattggttgtcaacttggatttagggtttgtaggatttgatttgcgctgggataaattgacgtttttgtaagccttttgtgtggatttattaattatacctggttagaaatgaggattagtatatacttttttgtgctcaccttgtggatttaacagtatttaatgaattctacgagaataggttatgcgaaatctgagcaatttgatatcattctaacctttggtaaaggagaggtgataagtttaggcaacttttaggctttcaatttgttgtttgtggaggaaatcgtaatgagaagttagaagtgtatgcaaacattgaggtgttaatgtattgtttgaggaagaagtccagcagaaattgtaggcaaaaacctgtgcttgaatagattttctaacttgtaatatacttctttttaaaaagtaatcactatacatcaaagatgtttgagaaaagatttttgggtaaaacgaggtgctcttggaaagttatattttggcagattgctcatacaagaactaaccattgtgcataattgaaaagcctttcgaaaaaattgtatttcacactactagtcgcagctataactactaattgaagctgtgtagcattatgaatatggatgccctctgctgaattttgggtccataccatgttcctttcctgctgtctctctgtttctttccatggtagaaggtttaaatgaggttccgtctgtgaaattggttttcttaagattcccctgtaccctgtcacaactatagaaagttactattcggtttagtccacaatgtgagtgttctgtaatatgttattcttttctacctgcataattagtgttcgcatcactaatactttgtttgtaagtcttgcttgatttagcttggttaccacttttatgcaacttcatctatagaccaggggccagttctttgtgttaagtagaattaggtgactgagattgtgcattctgtcataatgatggaagtatatgttgtgaacccaacacatgtttggtgcctacacccatgtctgtttgatatgataaaagttcagtgaatgatcctcagaatctgagggatcttaattgttcgttatccttctggtcatgctgtattagtcttctatctccctctattctgaacttgttatcctggtgctctaaagctccaaaaggagagggaggtagctaaagcagaaaagaaggacaggaagaggggaaagaaagaaaagaaaagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="79422" stop="81691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79722" g_stop="81391" g_length="1670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1670" r_length="1670" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U314107" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1670</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U314107" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79722" e_stop="81391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAG</genome_strand>
        <mrna_strand>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGGAAAGAAAGAAAAGAAAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334786" ref_strand="-" ref_description="SGN-U334786        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr2:7738157-7740101 FORWARD | Aliases: None(evalue: 2e-05, score=47)">
      <seq>aaaaatacaaacaaaaaaagttgtcctcctcctgtagcagtttcagagccaaggacatccaattgtgggtgggttgaccgtgtgggtgaaaacaacgcaactccattttgttccaaagggcacgagaacagcataaagtttcagtacaaaaatttgattgaaaactggcttcccccaagtttgccaagtgataatttaaatttggaggatgatcaatcatggctgtttcaaaaaaaacctaagcaaggtcgagttgaggaaaaaaaattagggggcggggacaaaacttgtggaaagtgcagttcattgtggcagcaaccccgggcccaaaaccttcctgatgttgagttgtatgcattgccccacccagttcctttttgaatcacaaaaccgggggtataaaaaatgttttagctggatatactggtcagggaattttgtagcttttttttgggaaatgatgtagtttgaacaggatttaggggcgatgacaaaaaagtttttttttattttttagctgccagttgctattttcaaaaatcccttgttttacatcaatgaaaatgatcaaaatagtattggatattttttttttcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="81580" stop="82780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81880" g_stop="82472" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="599" polyA_stop="646"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U334786" ref_strand="-">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="0.918" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334786" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81880" e_stop="82472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTT</genome_strand>
        <mrna_strand>AAAAATACAAACAAAAAAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGGACATCCAATTGTGGGTGGGTTGACCGTGTGGGTGAAAACAACGCAACTCCATTTTGTTCCAAAGGGCACGAGAACAGCATAAAGTTTCAGTACAAAAATTTGATTGAAAACTGGCTTCCCCCAAGTTTGCCAAGTGATAATTTAAATTTGGAGGATGATCAATCATGGCTGTTTCAAAAAAAACCTAAGCAAGGTCGAGTTGAGGAAAAAAAATTAGGGGGCGGGGACAAAACTTGTGGAAAGTGCAGTTCATTGTGGCAGCAACCCCGGGCCCAAAACCTTCCTGATGTTGAGTTGTATGCATTGCCCCACCCAGTTCCTTTTTGAATCACAAAACCGGGGGTATAAAAAATGTTTTAGCTGGATATACTGGTCAGGGAATTTTGTAGCTTTTTTTTGGGAAATGATGTAGTTTGAACAGGATTTAGGGGCGATGACAAAAAAGTTTTTTTTTATTTTTTAGCTGCCAGTTGCTATTTTCAAAAATCCCTTGTTTTACATCAATGAAAATGATCAAAATAGTATTGGATATTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335074" ref_strand="-" ref_description="SGN-U335074        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>agtaactcaagccagtcctactacatcggaaattcagggtgagctaatgcttctaggtttgactggatcttcttcttcaagtcttgatgccttgaacttccggcatggactagcttcgtatgtatttttagcttcttagaatactcttagtttagtaattttatgatagaggctctggtgatgatgacttccagattttggggaatgataagttttgagttatacaagttgattattgatttttattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="109599" stop="110447"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109899" g_stop="110146" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="249" polyA_stop="265"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U335074" ref_strand="-">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335074" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="109899" e_stop="110146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATTTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGTTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGATTATTGATTTTTATTA</genome_strand>
        <mrna_strand>AGTAACTCAAGCCAGTCCTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGGTTTGACTGGATCTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCGTATGTATTTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTTATGATAGAGGCTCTGGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATACAAGTTGATTATTGATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313688" ref_strand="+" ref_description="SGN-U313688        Tomato 200607 #1 [12 ESTs aligned]">
      <seq>taactcttcattttacttctctcttcttaacatatactttaattttaaatttgtctggtcttctgttgttaagattttcttaatcttgtatgagggttgtcatctttacaactattgggctttgttcactttgtttggtgatattgtcactttgctttcttgactgtttttgcaatcttttactataaagatagtattaatctttaattaagatctcatttcatacatttgtaattgatgctttacattccatttggctttcttattttcttccactaattctcttttctattccaatatgacaaaatgtagtgtttatgctattctggttgacattatcttgctaaatgatctatctatgacatagttttaaaaaaaataacatacttttgttcatattggtgttattatataaaatgtcttatgtcaatcgtgaaataggaattcaaagatgaggcttagttgaagcttaatgttgccacattttttttcattttgtgttgtaaaagttatgtgatgcgattctgtgctaacaggtgattttttatcaaagatgatccagaagatccaagcatgaaagatgcatctgtttttgtctaattctatacagtatgtaaatgtatgtaattagtattcccacatatgaaaatgttaaactatgtaagtatctcacttcgacattcagtagtatgacatgcacacgaaaatatattatgaacaaatttggcagctaaaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="111470" stop="110142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111170" g_stop="110446" g_length="725"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="732" r_length="732" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="782"/>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U313688" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111170" e_stop="110446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTG----T-T-T--TTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCT</genome_strand>
        <mrna_strand>TAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTCTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTCATCTTTACAACTATTGGGCTTTGTTCACTTTGTTTGGTGATATTGTCACTTTGCTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAGTATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTTTTCTATTCCAATATGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTATCTTGCTAAATGATCTATCTATGACATAGTTTT-AAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTTTCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTGTCTAATTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACACGAAAATATATTATGAACAAATTTGGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325542" ref_strand="+" ref_description="SGN-U325542        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>agtgtttataatttctttttctttttagattaatgtttaaatttaaaataaaaaaagaaaagataggggaagtggttataataattacataagatgtactacaacagtaaaaatgatacgtgtcttaaaaaaattatatattattttatacactaacaaatggagtgatgtagctcctgctttttatgtttttagcagtagtgtaattttcatttttttggcttttagcaaaacttttcctcctttttttaattttattttctttctacattaatatttaaatttaatataaaaaattttaatttctgatatgttcattgattttgtctgaatcacaaatatctcaaacaaaaaaaatatgaataataatttataattataattagtataataaataaataaaaatatgaaacatagagatatatatgtacaagaagtgtttataatttctttttctttgtagattaatgtttaaatttaaaataaataaaagaaaagataggggaagtggttataataattatttttttatatattttactcttaatattaaatacttattcgataaattattttaagacctaatactctactaaacatcatcaatagaaatagtatagtaaaatacgttaataattattttttaattgtgtatcaaattaaataataactaataaaaattaacgaaagtaatgtatgattaacttgacacattatgagtttaataatgattaaagaagacagatgtaaattgcttttcactttttgttttcttttttcttaggaattccacttcctacattacacgtagcccctcctttttttttattttattttctttctacattaatatttaaatttaaaataaaaactttcaatttctgatatgttcattgattttgtctgaatcacaaatatcgcaaacaaaaaaaaatatgaataataatttataattataatttatataataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="-" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="113121" stop="111540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112821" g_stop="111841" g_length="981"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="979" r_length="979" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="-" ref_id="SGN-U325542" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>981</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112821" e_stop="111841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATATATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGGTGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTTCACTTCCTACATTACACGTAGCCCCTCCTTTTTATTT-TTTTATTTTCTTTCTACATTAATATTTAAATTTAGAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAAAAA</genome_strand>
        <mrna_strand>AGTGTTTATAATTTCTTTTTCTTTTTAGATTAATGTTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTATTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGTTTTTAGCAGTAGTGTAATTTTCATTTTTTTGGCTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAATATAAAAAATTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAAC--AAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAATAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATGTATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGATGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTCCACTTCCTACATTACACGTAGCCCCTCCTTTTTTTTTATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAAC-AAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342187" ref_strand="+" ref_description="SGN-U342187        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttctcctctgtgtttctgttggttgtttgctgtattgggttctctctatttctccagctgaggaaacaaaggaaacactcttcactgacaaaggtcacagagaccaaaggaacacttcatttactttgaggagcacatccaaatctggatctctcatctccgttacagtagatggaagaagttattcgaattgctaacattgaaccccaagaagacaaaggtgaagatcaaggacgtccaagggtagaatagtaaatttaacctgacaagtacacactctcatgattttagaacgctccatcttactcattagcacagaatagacgcaatattttcaacacgagaatcagttcttccatttctcttgctccaactccaacagcaacgaatttcaggagctggtgtcttcattttatatttggtacggtattcgaataatttatcaagagcttgacgcatgtagagaatgcctaggggatccacagactctggacaacagatgcagttattctagtgtaccaggaaccgatataaagttgaaggagatcggtcatgaaccatgtaggcattgaagcagctgccaatgatttcaatggtaaccggtctctctcaagtctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110G11-EREUg/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110G11.1" temp_strand="+" temp_description="C04HBa0110G11.1  CU914753.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110G11 sequenced_by:sanger upload_account_name:uk">
        <position start="117275" stop="125606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117575" g_stop="117621" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="117622" i_stop="120410" i_length="2789">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120411" g_stop="120455" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="92" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120456" i_stop="122060" i_length="1605">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="122061" g_stop="122184" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="216" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="122185" i_stop="122608" i_length="424">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="122609" g_stop="122787" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="395" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="122788" i_stop="123551" i_length="764">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="123552" g_stop="123669" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="396" r_stop="513" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="123670" i_stop="125197" i_length="1528">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="125198" g_stop="125306" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="622" r_length="109" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110G11.1" gen_strand="+" ref_id="SGN-U342187" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110G11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117575" e_stop="117621"/>
          <exon e_start="120411" e_stop="120455"/>
          <exon e_start="122061" e_stop="122184"/>
          <exon e_start="122609" e_stop="122787"/>
          <exon e_start="123552" e_stop="123669"/>
          <exon e_start="125198" e_stop="125306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCCTCTGTGTTTCTGTTGGTTGTTTGCTGTATTGGGTTCTCTCTGTTGAGTTTTGTCGTTCTAATGCATCTTTTTGTTTATTTCTTCGATTTATGCTTCCTTTAATGTCTTTGCGTTGCTTGTTTGCTGTCTTGAGCTTTCTCCTTTGTGTTTTTGTTGATTGTCTGCTGTATTGGGTTCTCTCTGTTGAGTTTTGTCGTTCTAGTGCATCTTTCTGTCTTTATTTCTTCGATTTATGCTTCCTTCAATGTTCTATTTGTTACTTAAATTGTTGCTTTCTGTGCTTTGTTCAATGTTCCATTTGTTATATTTAAATTGTTGCTCTCTGTTTTAAACCTAATGTTACTTCGATTTGGGGAAATTTGTTGCTGAAAGCATCCCAGGGTTATTGCTGCAATGGGTTTCACATTTTCCAAAAAAATATCCACTAATTGAATGAACGTAAAATAAAAGAGACAATTCCTTGACGGAGAGATACCTACTTCAGCTTCAAACTACATAGAAAGTACGTGTAATAATGAAAAGAGGTTCAGTATGGAGTGTGCCGGATTTTGCTCTTAGTAAGTTGTCATTGTAGGTGACATATCATTCCTAGATGAAAGCATCACTTATAGTTTATGAAATTTTCAAATTACAACAAATTATGACATTATAATAAGTTAGTTCTTTCCCATCTGCACAGAGCTATCCAAAAGAACATTGAAAGGCATTACTCTTTCTCTTATAATACACAGATGGTGATAGTTCATCTAGGAAAAGAAAAAGAGAACAAGTCGCGGATCAAACTCGCTGAAAATAGTTCAGGTAGGAAAAGAAAAGAGAACAGCCAACTGTTCACACGTGTGATACTCGCAAAAGAGTTATTAAGAATGATACATAGCTGGTGATAGTACTTAACTTGCGAGCAAAGAACAGACATTTCTGAGTATGATTATATTCGTGTTGTTGTTGTTCTTATTTTTATTATTCTTTTGTTGTCTCTTAGAAAGAACAGGAACATATTTCAGGAAGTGCCTTGTGATGAAGTGTCTTTATGTTACCAAATAGACAACAACAAAACAAAAAAAGTTCTTTGTTATTTTGTGTGAAGAATCTTCTGGCGCTTCAACTTTTGTTACAGCTAACATTGTTTCATCTGATATTGGCAAGCTAAGGATAACTTTTGGGTTAAACTGGAGCAATCTTTGCTGCCCTGATTACTGGCTGTCACTCTTAGTGGTCTTTTAGGGGTAGATGTGCCAAATTCTACCAAGACATTATTGAAAATAATGAAAAAGTAACACCCATAAGATATACTAACAACAGTATCATATAGTGCAAAAAATTAAGGAAAAAACATAGAAAAATGAATCAGCTCGTACCTGTAAGAGCAAAACCATAAACCATACTAGAGGAAAGAAGAAGCGGGAGAAGTAGAGGTTTGATTTTGGCTATGGGAGTATCTGTAGAGGCTTTACTTATACTCTAAGTCTAGGCATTAATTGACATGTCTAACCCTATCCAAAAGAACATAAAAAAACCATTACTGTTTCCCTTATAATATGTAGATACTGATAGTTCAGGTTGGACAAGCAAAGGAGAACAAATTGTTCAAGCGTGAAACAAATTGTACACGGATGCGTTTGAGCTTTCTCTGTTTCTTCATGAAGGCAATTTTCTAAATGAGCACAGTTCATCTGCAGACCAACAATGGAAAAAGATAGAGAAGAAGTCATAAAATAAATTAGCATATCATGAGAACTTTATGAAAAAAAATTAAGTGTAAACACAGTGAATATTATTGAATATCCATCCCTCTGTTTTTCTTCAAACATGAATTTGGGACTCTCTTCTCTCGTAAATAGGATATGCTATTTTGGATGGCTATTGTATATTGTGTGGAGTTTTGTGTAACTTCTCAATGTAAGTGAGAAATTCTACTTAATTCAAAGGGAAAACAAAAAGAAGGCAGAATAAAAAACTTAATCCTCAGTATTGGTTAGTAGAAATGGTTTTGGAGATCCATTGATGTATGCTAAGCTCTTATAATACATAAATAGTCATAGTTCAGCTAGGAAGAGGAAAGGAGAACAAATTGTTCACGTGTGGAACTTGCGAGGTACAATCAATAGGTGGTCATTTCACTTAACATCAGTCGTTTAATGTGTGTGTTGAATTGAATTATATACGAGTCTACCTCTGCTTCAGAGCTGCTTCAGGAAGTATATCATCAATGGTGTTTAAGAACACAATCAAGAACAAGTGATGTTGCATCAACAAAAAGAAACAATTCTTAGTTATAGTATTTCCCACTAGATGAGTCAGTTTGCTCTGTGGATAAAGTGCATGGAATAACTTAGTTCGAGTAGAAAAAATGCTTTGTTACAACAAAGTTGCACCATTTAAGAAGATGAGTACCGATTGAGTAATATAATTAGAATTGCCGTTCAAACTTTTCCTAAAAGGAAAACAGATGCATGTTACTGACTTGTACTTCTATTCCCTGCTTTGGTGTAACAGTGTTTTGCTTGATAAACAGAAACTGTTAATTTTTTGGACACCAATTTTATATCTGACGACACTTAGTTGAGCTAGATTATTACGTTGTGATTGGCCCCTCGCAGCTGTTACCTCTCTACCTTAACACTTCTCCCTAGGTTAAAATAGTTTAGTGACCTGGAAATATTAAAAATTTCTGGCAAACAGGACTTACGCAGCCACTCAGCTGACTACTTGTGTTGTTATTTGTGCTTTTGTTTTTTAATACTTCCCTTGAGATGGAATTCACCAAGTTTTACTCTTAGTATGCTGTCATTTGACTTCTTCGTTACCTTCTGTACATTTTGGAACTCAGATTTCTCCAGCTGAGGAAACAAAGGAAACACTCTTCACTGACAAAGTGAGTTCCTCCACTTGTGCATTCTACATATTTACCTATATTCATCTACTTTTCTGTTCTTCATTCTGTCTACATTACTGTTTGTGCCTGGACTGTTAATTAAATAAAGTAGAATAAAAGAAACAAATTTTAAATTAATTTTTCCCGAAACACGCTGAACTACACTTTCCTATGAGCAGGTAATTCTGTTATACTATGATGAGTCCTCCCTCCATAGGGAAAAATTAGAAAGCACTATTTGTTAACAATTCGTTTTTTGCTTCTTTTTTCCCCTGTCCATCACGTGAGTACTTCCCGTCAGCCCAGTTTTTTGGCACAACAAAATGCTCTCTGATTTTAATCAATGTTTTTCATATGGGGAACTCTGGTTGTGTAATGTTTACATTGAAATATCAAATCAAAAATATTTTTGTCTTTGTTGTTATGTGACTTCCTTTCAAACTTAAGTTTCATTTGGTTGGTTTATTGAAACCAGAAAACCCCCAACTAGAGGCTTTGATTTTCTAAGTTTGCTTCTTCTTGATTATTCTACTAGGTAATATCAAGTGTTGCTTTTACTTTGTAAGTATCTGTGCTTTTACACAGGAATATGCTTAGTTTGTCATCATATCATACATCACCTAAGGCAACACGTAAACTAAGCTGTGGTGACATCTTTGACATTATTTCAATATCATTTTAGCGTGACCTAGGGATAAGGTTCACGTACATTCTACCCTCCACACACCCCATTTGTGCAACCACACTGAATATGTTACTACGCTGCAACTGTATGAAATTGTTAACTCTCAATAATGAGAACATAAACACTAAATGAAGCCACTTTGTTCTCATCTATATCTTCCTCAATCATTTCATTTGCTAATATTCCTTTGTCTCAACTTAACTTCTTTGAAGTATGATATCTCTATTTGGTGATTTACTGTCAACATAAAGATTGTTAGCTACTGAAAACTTTATGTTACATCTATATAACTTGTATATGTATAAGTATTAATTCTTACTTTAGTATTATTACATGTGAACCTTCTTTTGGATCTATACAACTTTATTTGCCTCCCTTGTCCCTTGCTAATGAAACATACATTTTGTTTGTGATGCTGATTTTGCCTAATATGGTCCTGTCAACACATGTTTGGATCAACTAATAATTGATTAAGTCCAGTAAGGACTGATTGGTCTTAATATACTTATTTTGAATGATAATTCCTCTCCGAGTTCAAACTTATTAATATGGTTCTGTCAACGCATGCTTGGATCAACTAATAATTGATCAAGTCCAGTAAGGAAGGACAGGTCCTATCAACACATGTTTGGATCAACTAATAATTGATTAAGTTCAGTAAGGACTGATTAGTCTTAATATACTTATTTTGAATGATAATTCCTCTCCGAGTTCAAACTTATTAATATCTAATGTAATTAACGTAGGTGTATTGTTGATGATCAAATTCAACACAACAATACTAATTGATCCACCTTATCCACAACGCGAGCAACTACAATCAAAATTTTACAACATTCCTTAGTATATTCTCACCGTCTTTTTTTTGACATATCAAATTAACATCACCAGCAATGTACCTTCTTTGACATTATCTGCAGGGTCACAGAGAACAAAGGAACACTTCATTTACTTTGAGGAGCACATCCAAATCTGGATCTCTCATCTCCGTTACAGTAGATGGAAGAAGTTATTCGAATTGCTAACATTGAACCCCAAGAAGACGTTAGTAAAAAATTCATTCATTATTTAATGTTAAAACTTACTACAAATACTTGCATTCATTCTTTTCATAATACATGAACAAACATTCTCAATTGAAGCAAAAATATCATTCCGAGTGCCCAAAAGAGATTCACGATAACGAAAAACATTCGGCATGCACCAAGCTACTTCTGTTGACTCATTTTAGAATCCAACGTCAACTTAACATCTTTACGTTCTCTTTAGCAGCAAGCTTCATGTATAACCTGCACATAACTTGTGTAATATATTTAAAACACCACCACGTCTTTTTTATTTTCACGTCAATATAAAACACGTCCGCGCCTTGCACGGACACTCACCCCCTAGTATATATACATATATTTCTTTTCTACTATCTATCTTACTTATTTCTTTTCTACTATTTCTTTTTTCTACTATATAGAAAGGTGAAGATCAAGGACGTCCAAGGGTAGAATAGTAAATTTAACCTGACAAGTACACACTCTCATGATTTTAGAACGCTCCATCTTACTCATTAGCACAGAATAGACGCAATATTTTCAACACGAGAATCAGTTCTTCCATTTCTCTTGCTCCAACTCCAACAGCAACGAATTTCAGGTATGTTCTTCTTTCAATCTTGCACCAATTTTCTTCCGGTTCATTTCGAACTTTTAAATTTTACCACTAAAATGTAGGTTTGACGTTGTTATTGTTCTGTCTAAATTCTCTACCCCAATTTTATGATTGAGGTAAAGATTTATGTTGTCCTCACACAAAGATGCGATTTTTTTTTATATAGTTGCAGATTTATATCTAAGAAATAATAAATTACTGACTGGTCCAGTAAATAGTTTATCGCAATAGGTTATCCATGACTTAACAAACATGGTAATGTGTATTCAATTATTTTGTAATCTAGCTCTATATTCTCTCTGTCTCACTCTTTCAAGATTCCTTCTATTGAAGATAGACAATTGTTAGGTCTATAGTGATTATGCCCTTTCGATCGAGATTTGAAATTGAATTGTTTGGATCGATGACTAATGGAATGAGGGCTCGTCTTCTTCTGTTTCAAACCTACACTCACAAAATTCTGTGAGCTCATTTATTTATTTTTTGATATTTTCCTTTTCGGTAAGAAAATTATTATGGTTAGTTCTCCCTAAGCTTTATTTTGCTATTAATTGCACAAAATAAGAATGTTAAGATGAAGTTTGATTATGTCCTAAACTTTTATGAAGTTTGTAATTGCTTTTTGATGCTCATAGGCCGTTTTAGATATAATAAATTTAATAATCGTGCTATTATCTTAACTTCTGGTAACATATAAATAATTTCAAGATAACATCAACCTGTTCATCCTTTAAAAACATCTGAATCAGGAGCTGGTGTCTTCATTTTATATTTGGTACGGTATTCGAATAATTTATCAAGAGCTTGACGCATGTAGAGAATGCCTAGGGGATCCACAGACTCTGGACAACAGATGCAGTTATTCTAGTAAGTACAATCTCTTTACTTTTCACCTTTATACTTAATTTGGTTTAAGAAAGGGAAAGATTGGAACCTATGGTGAAGGGTTGGTGATTCCAAGTATTGTGAAAGAAACAATGTTTAGCTAGACTTCTAGAAGATGGGGAGCCAATGCAAAACATGAGATTGTTGTTCCTTTATCATTATGTTGACAAAATTTCCGATTAAATAAAAAAAATGTTACCAAAAGGACGCATGAAATAGTCCATAAGTTGAAGTAGGTGCACAACTCATAAAAAGTCTGAAGGGAGGAAACTATGTTCAATTCAAAGAAATGGATTTGCTGATATCACATAATTAAATGTTCAACCAATTTACATAATACTAGAGACTAGTAAATGTAATAACTAAGCCAATAGGATCCTCATTTAGAGGTAAAATGGAAGCTGTTAATGAGTCCCAAACCCACGTTTTTATCCAAGTATTTGATAATGCTTAAAACTGGTGTTTATTCATGTCAATTAAGATCTCTGATTGAATAACTTATAAGAGAGTGAAGACAAGTGATCGATCATTCAAATGAGCTCTGTATTAAGGAAAGAGAGGAAAACGGATGTGACATTCAGCTTTCAAAAATTTAGCACTAGCATCTTCAAAAATTGCAAAGATAGCTAGAAAGAACAACTAATAAGAAATTTTGCACACTTGAAAAATTGTTCCTCATCCTTTATTTATTTTTTGTGCACTCACAAGGTTCTTATATATGTATAGAAGATCGGATTTATTGATAAAAAATATATCTTTTGTTAGGTTGTCTACATTTGATATACTTCTTGTATAACCAAAGTAGACACAACTTGTGTTCTAAGTTGAGCTTGTTTATGCATTTTGTGTTATTGCACACTTCTAAAAAGAAAGGTTAGATGCAAGGCTAATAAGTATTAAACTACATGAAATTTTCTCGAACTTGGGAAAATGAGATTGATGACTAAATTCGGTTGTTTAAAGACTGACTGGTGTGTTTTTTTATACCTAGCAAACAAAGAAGTGGAAAATATAGATTTTCCTCTTGGTGAGAAGTGGTTTACAAAGTTTGTCGGGATAAAAATTGAATTTTATGTACTTTACCTTACATTAAAAAAAAAAGTTTTTATGTAGTTGTTCTAGGATTTTGTTACTCATGGTCAAATGAATTGATGGGCTTATTTGGTAGCTTTTTCAGATATTCGTTACAGTTGTTATTCATTTATCCATTAGTGCCACCTCTATTTATTTATAGGTGATTGGTCATTAGGCAATTGATAAGTAGTTAGATTAATTCGAAAATCATGACTGTTTGTAGCCTAAATAACACACACACTGGTGGAAAACTTGAGGTTCTGTCGGTCTATATACCTAATTTGTCTCTAATTAAGCAGGTTCCTTGGTGTATCAAATAAGTGATATCTTACTGGTTGGTTCTGCCTAAAAAGAAAAAAAAAGTGGAAATATATATTTGTGAATTAATTTCGAATCACATTTTTATTTGAATTTTGTTTGTCAATATTCATTTAAGGTGTACCAGGAACCGATATAAAGTTGAAGGAGATCGGTCATGAACCATGTAGGCATTGAAGCAGCTGCCAATGATTTCAATGGTAACCGGTCTCTCTCAAGTCTGGATG</genome_strand>
        <mrna_strand>TTCTCCTCTGTGTTTCTGTTGGTTGTTTGCTGTATTGGGTTCTCTCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCTCCAGCTGAGGAAACAAAGGAAACACTCTTCACTGACAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACAGAGACCAAAGGAACACTTCATTTACTTTGAGGAGCACATCCAAATCTGGATCTCTCATCTCCGTTACAGTAGATGGAAGAAGTTATTCGAATTGCTAACATTGAACCCCAAGAAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTGAAGATCAAGGACGTCCAAGGGTAGAATAGTAAATTTAACCTGACAAGTACACACTCTCATGATTTTAGAACGCTCCATCTTACTCATTAGCACAGAATAGACGCAATATTTTCAACACGAGAATCAGTTCTTCCATTTCTCTTGCTCCAACTCCAACAGCAACGAATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGGTGTCTTCATTTTATATTTGGTACGGTATTCGAATAATTTATCAAGAGCTTGACGCATGTAGAGAATGCCTAGGGGATCCACAGACTCTGGACAACAGATGCAGTTATTCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACCAGGAACCGATATAAAGTTGAAGGAGATCGGTCATGAACCATGTAGGCATTGAAGCAGCTGCCAATGATTTCAATGGTAACCGGTCTCTCTCAAGTCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>31</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="98" PGL_stop="4454"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98" e_stop="188"/>
            <exon e_start="363" e_stop="485"/>
            <exon e_start="1375" e_stop="1455"/>
            <exon e_start="1549" e_stop="1637"/>
            <exon e_start="1726" e_stop="1800"/>
            <exon e_start="2309" e_stop="3687"/>
            <exon e_start="4071" e_stop="4429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.989"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="98" e_stop="188" e_length="91"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="363" e_stop="485" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1375" e_stop="1455" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1549" e_stop="1637" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="0.987">
            <gDNA_exon_boundary e_start="1726" e_stop="1800" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2309" e_stop="3687" e_length="1379"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="4071" e_stop="4429" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="3687"/>
              <exon start="4071" stop="4429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313310" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG : ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG : GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG : AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC : TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG : GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAGGTTTGTTTTTTTATAAATTTATCAATGGATGCAAATGCTGGTAGTATGTGAAACACCATCGTATTATTTACTAATATCTGATTATTTAGAAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAGGTAGGAATTCTTTTGAAACTTTTAGATAAAGGCCCTGATGATGATGTAAGATTTAGAGATATAATTCAGCTAACACCTGCTATTAGATGTTTTGATGCTTTCGGGAGTTTGCTTATTCTAAGTGCATGGGGCTCATTGGAGTTGCCCTCTATCTGTTCAATATTAAGTTGGAGCAGAAATCCTTTTACTGTTACCTTTCTAATTATTAATTTGTTAAAAAGCAGAACTGATGTCACCTTTATATGTAAGTTTGTTCTCTTCCTTTATGTAAAACCCAGACAGAGGAAGTATGCATTGATGTCCTGGTAAAGAGATTCATTGCTGGGTCATGTCCTGGTAAAGGGATTCATTTTTAGGGAGATAAATCACCAAGTTCGACTCACAGCAGGGTCGAAGTTAGGTGGATTCATCCAATATGCCTTAGTCAAGGCTCATACCGCTCCCAACACTGTCCTGATTCAAGATCTAATTCAGTTAACACTGCAAATATATGTTTTTGAAGTATTTTTCTGAATAAATGACGAGTGCTAAGCTTTGGGAAAGCTATTTGTCAACCCTTCTCTCAGCAACATCTAAAGTGCTTGTGTGTGTCCATTTTGCTATGAGGTAGATTTTGATCGAGTGAGGTAATATGCTCAGAATTACAATTTTGTAAACTTGAACAATTCGTTCTGAATGCTTGAATGAAATATAGGCTTCTTTGAGATGTGGGATCAGATAAATGTTTCTTAAAGGTTCTTCATGCATACTTCATTTTCTGAATACCAGTTACATGTGCTTTAAGTCACTGACGTTTGAATGACATGTACTCACTCGTTTTTCTTCACCATATTTTCAATTGACAACCGTATGTCGAGAATGATGAAAGATAATAGGGATGCTCTATTTCGATGTGTAATTGGCAGACTTCACAGAGTGCAAGTGTAAGTGGTTATTGTTCATGACATGACATGTTTGCTGTTATTTTATCCAGGAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG : GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAA</gDNA_template>
            <first_frame> *  G  V  N  E  E  T  K  P  K  K  R  A  L  L  S  W  R  R  I  I  L  I  L  S  L  F  L  Y  Q   : D  G  S  V  P  E  S  G  E  A  K  G  *  D  T  Y  *  C  E  *  D  S  D  Y  *  S  G  K  D  A  K  L  Y  H  L  C  Y  D  L  A  S   : G  E  R  I  R  G  D  R  V  Q  G  N  G  Q  G  N  Q  Q  D  C  D  N  C  G  I  D  Q   : E  E  N  C  W  S  S  P  S  N  V  Y  Y  I  H  *  Y  N  *  Y  M  G  T  P  *  R  R  S  P  T  :  S  R  D  H  Q  A  C  I  H  D  Y  N  Y  P  R  Q  K  G  A  G  *  E  C  C  G  :  V  P  T  T  I  A  S  R  P  G  E  S  V  N  R  F  *  L  *  W  R  F  V  F  L  *  I  Y  Q  W  M  Q  M  L  V  V  C  E  T  P  S  Y  Y  L  L  I  S  D  Y  L  E  G  S  P  S  G  G  R  R  G  R  G  G  R  G  R  G  R  S  R  G  F  P  G  R  N  S  F  E  T  F  R  *  R  P  *  *  *  C  K  I  *  R  Y  N  S  A  N  T  C  Y  *  M  F  *  C  F  R  E  F  A  Y  S  K  C  M  G  L  I  G  V  A  L  Y  L  F  N  I  K  L  E  Q  K  S  F  Y  C  Y  L  S  N  Y  *  F  V  K  K  Q  N  *  C  H  L  Y  M  *  V  C  S  L  P  L  C  K  T  Q  T  E  E  V  C  I  D  V  L  V  K  R  F  I  A  G  S  C  P  G  K  G  I  H  F  *  G  D  K  S  P  S  S  T  H  S  R  V  E  V  R  W  I  H  P  I  C  L  S  Q  G  S  Y  R  S  Q  H  C  P  D  S  R  S  N  S  V  N  T  A  N  I  C  F  *  S  I  F  L  N  K  *  R  V  L  S  F  G  K  A  I  C  Q  P  F  S  Q  Q  H  L  K  C  L  C  V  S  I  L  L  *  G  R  F  *  S  S  E  V  I  C  S  E  L  Q  F  C  K  L  E  Q  F  V  L  N  A  *  M  K  Y  R  L  L  *  D  V  G  S  D  K  C  F  L  K  V  L  H  A  Y  F  I  F  *  I  P  V  T  C  A  L  S  H  *  R  L  N  D  M  Y  S  L  V  F  L  H  H  I  F  N  *  Q  P  Y  V  E  N  D  E  R  *  *  G  C  S  I  S  M  C  N  W  Q  T  S  Q  S  A  S  V  S  G  Y  C  S  *  H  D  M  F  A  V  I  L  S  R  K  W  I  Y  A  G  *  V  *  *  W  W  V  *  S  Q  S  E  L  W  *  G  *  G  S  R  Q  R  S  *  L  P  W  P  R  K  G  R  V  Q  W  S  T  G  C  P  A  R  W  W  L  L  Q  S  R  S  S  H  A  G  T  R :   P  W  P  W  K  G  N  S  R  *  G  T  W  I  Q  I  *  W  A  D  P  R  R  W  C  L  N  G  Q  A  *  R  I  Q  R  L  C  A  M  S  A  C  S  M  F  Y  V  F  H  S  L  V  T  P  C  *  Q  *  V  I  Y  L  *  S  E  *  T  N  Y  R  F  Q  D  R  P  Y  V  V  M  F  S  F  L  C  F  S  *  Y  L  L  S  L  F  S  A  *  L  G  G  W  S  S  V  I  S  L  V  S  S  T  F  F  D  L  S  L  F  V  E  </first_frame>
            <second_frame>  R  A  *  T  K  K  R  S  R  R  R  G  L  F  F  R  G  E  E  *  Y  *  S  Y  P  Y  S  Y  T  K  :  M  D  R  Y  Q  K  V  E  K  P  R  V  E  T  P  I  D  A  N  E  I  R  I  T  S  Q  G  R  M  R  S  Y  I  T  Y  A  M  T  L  L  Q  :  E  K  E  S  E  E  I  V  F  K  A  M  G  R  A  I  N  K  T  V  T  I  V  E  L  I  K  :  R  R  I  V  G  L  H  Q  V  T  S  I  T  S  T  D  I  T  D  T  W  E  P  L  E  E  G  L  L  P :   L  E  T  T  R  H  V  S  M  I  T  I  T  L  A  K  K  E  L  D  K  N  A  V  G :   Y  Q  P  P  L  P  A  D  Q  V  K  V  S  T  D  F  D  Y  D  G  G  L  F  F  Y  K  F  I  N  G  C  K  C  W  *  Y  V  K  H  H  R  I  I  Y  *  Y  L  I  I  *  K  D  L  L  V  E  D  E  E  A  A  V  V  E  E  G  E  G  P  E  A  F  Q  V  G  I  L  L  K  L  L  D  K  G  P  D  D  D  V  R  F  R  D  I  I  Q  L  T  P  A  I  R  C  F  D  A  F  G  S  L  L  I  L  S  A  W  G  S  L  E  L  P  S  I  C  S  I  L  S  W  S  R  N  P  F  T  V  T  F  L  I  I  N  L  L  K  S  R  T  D  V  T  F  I  C  K  F  V  L  F  L  Y  V  K  P  R  Q  R  K  Y  A  L  M  S  W  *  R  D  S  L  L  G  H  V  L  V  K  G  F  I  F  R  E  I  N  H  Q  V  R  L  T  A  G  S  K  L  G  G  F  I  Q  Y  A  L  V  K  A  H  T  A  P  N  T  V  L  I  Q  D  L  I  Q  L  T  L  Q  I  Y  V  F  E  V  F  F  *  I  N  D  E  C  *  A  L  G  K  L  F  V  N  P  S  L  S  N  I  *  S  A  C  V  C  P  F  C  Y  E  V  D  F  D  R  V  R  *  Y  A  Q  N  Y  N  F  V  N  L  N  N  S  F  *  M  L  E  *  N  I  G  F  F  E  M  W  D  Q  I  N  V  S  *  R  F  F  M  H  T  S  F  S  E  Y  Q  L  H  V  L  *  V  T  D  V  *  M  T  C  T  H  S  F  F  F  T  I  F  S  I  D  N  R  M  S  R  M  M  K  D  N  R  D  A  L  F  R  C  V  I  G  R  L  H  R  V  Q  V  *  V  V  I  V  H  D  M  T  C  L  L  L  F  Y  P  G  N  G  F  M  P  A  E  Y  D  D  G  G  Y  D  R  N  R  S  Y  G  R  G  R  G  R  G  R  G  R  S  S  R  G  R  G  R  G  G  Y  N  G  P  Q  D  V  Q  Q  D  G  G  F  Y  N  Q  E  A  P  M  Q  G  R   : G  R  G  R  G  R  G  T  R  G  R  G  R  G  F  R  S  N  G  P  I  Q  G  G  G  A  *  M  V  K  L  E  E  Y  R  D  Y  V  L  *  V  P  A  P  C  S  M  F  F  I  R  *  L  L  R  V  N  S  R  L  S  I  C  N  Q  S  R  L  I  I  D  F  R  T  A  R  M  W  *  C  F  L  F  F  V  F  H  D  I  F  Y  L  Y  S  L  L  D  *  V  V  G  Q  V  *  F  R  *  *  A  A  H  S  L  I  C  L  C  L  L  K </second_frame>
            <third_frame>   G  R  K  R  R  N  E  A  E  E  E  G  S  S  F  V  E  K  N  N  T  N  L  I  L  I  L  I  P  R :   W  I  G  T  R  K  W  R  S  Q  G  L  R  H  L  L  M  R  M  R  F  G  L  L  V  R  E  G  C  E  A  I  S  L  M  L  *  P  C  F  R :   R  K  N  Q  R  R  S  C  S  R  Q  W  A  G  Q  S  T  R  L  *  Q  L  W  N  *  S  R :   G  E  L  L  V  F  T  K  *  R  L  L  H  P  L  I  *  L  I  H  G  N  P  L  K  K  V  S  Y   : L  S  R  P  P  G  M  Y  P  *  L  Q  L  P  S  P  K  R  S  W  I  R  M  L  W   : G  T  N  H  H  C  Q  Q  T  R  *  K  C  Q  Q  I  L  T  M  M  E  V  C  F  F  I  N  L  S  M  D  A  N  A  G  S  M  *  N  T  I  V  L  F  T  N  I  *  L  F  R  R  I  S  *  W  R  T  K  R  P  R  W  S  R  K  G  K  V  Q  R  L  S  R  *  E  F  F  *  N  F  *  I  K  A  L  M  M  M  *  D  L  E  I  *  F  S  *  H  L  L  L  D  V  L  M  L  S  G  V  C  L  F  *  V  H  G  A  H  W  S  C  P  L  S  V  Q  Y  *  V  G  A  E  I  L  L  L  L  P  F  *  L  L  I  C  *  K  A  E  L  M  S  P  L  Y  V  S  L  F  S  S  F  M  *  N  P  D  R  G  S  M  H  *  C  P  G  K  E  I  H  C  W  V  M  S  W  *  R  D  S  F  L  G  R  *  I  T  K  F  D  S  Q  Q  G  R  S  *  V  D  S  S  N  M  P  *  S  R  L  I  P  L  P  T  L  S  *  F  K  I  *  F  S  *  H  C  K  Y  M  F  L  K  Y  F  S  E  *  M  T  S  A  K  L  W  E  S  Y  L  S  T  L  L  S  A  T  S  K  V  L  V  C  V  H  F  A  M  R  *  I  L  I  E  *  G  N  M  L  R  I  T  I  L  *  T  *  T  I  R  S  E  C  L  N  E  I  *  A  S  L  R  C  G  I  R  *  M  F  L  K  G  S  S  C  I  L  H  F  L  N  T  S  Y  M  C  F  K  S  L  T  F  E  *  H  V  L  T  R  F  S  S  P  Y  F  Q  L  T  T  V  C  R  E  *  *  K  I  I  G  M  L  Y  F  D  V  *  L  A  D  F  T  E  C  K  C  K  W  L  L  F  M  T  *  H  V  C  C  Y  F  I  Q  E  M  D  L  C  R  L  S  M  M  M  V  G  M  I  A  I  G  A  M  V  G  V  G  V  E  A  E  V  V  A  P  V  A  A  E  G  E  G  T  M  V  H  R  M  S  S  K  M  V  A  S  T  I  K  K  L  P  C  R  D  E  :  A  V  A  V  E  G  E  L  A  V  G  D  V  D  S  D  L  M  G  R  S  K  E  V  V  L  K  W  S  S  L  K  N  T  E  I  M  C  Y  E  C  L  L  H  V  L  C  F  S  F  V  S  Y  S  V  L  T  V  G  Y  L  S  V  I  R  V  D  *  L  *  I  S  G  P  P  V  C  G  D  V  F  F  S  L  F  F  M  I  S  S  I  F  I  L  C  L  I  R  W  L  V  K  C  N  F  V  S  E  Q  H  I  L  *  F  V  F  V  C  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="165" stop="188"/>
                    <exon start="363" stop="485"/>
                    <exon start="1375" stop="1455"/>
                    <exon start="1549" stop="1637"/>
                    <exon start="1726" stop="1800"/>
                    <exon start="2309" stop="2414"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYPYSYTKMDRYQKVEKPRVETPIDANEIRITSQGRMRSYITYAMTLLQEKESEEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSITSTDITDTWEPLEEGLLPLETTRHVSMITITLAKKELDKNAVGYQPPLPADQVKVSTDFDYDGGLFFYKFINGCKCW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3478" stop="3687"/>
                    <exon start="4071" stop="4274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>411</number_coding_nucleotides>
                  <number_encoded_amino_acids>137</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HVCCYFIQEMDLCRLSMMMVGMIAIGAMVGVGVEAEVVAPVAAEGEGTMVHRMSSKMVASTIKKLPCRDEAVAVEGELAVGDVDSDLMGRSKEVVLKWSSLKNTEIMCYECLLHVLCFSFVSYSVLTVGYLSVIRVD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2460" stop="2837"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KDLLVEDEEAAVVEEGEGPEAFQVGILLKLLDKGPDDDVRFRDIIQLTPAIRCFDAFGSLLILSAWGSLELPSICSILSWSRNPFTVTFLIINLLKSRTDVTFICKFVLFLYVKPRQRKYALMSW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2838" stop="3041"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDSLLGHVLVKGFIFREINHQVRLTAGSKLGGFIQYALVKAHTAPNTVLIQDLIQLTLQIYVFEVFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="101" e_stop="188"/>
            <exon e_start="363" e_stop="485"/>
            <exon e_start="1375" e_stop="1455"/>
            <exon e_start="1549" e_stop="1637"/>
            <exon e_start="1726" e_stop="1800"/>
            <exon e_start="2309" e_stop="2370"/>
            <exon e_start="2460" e_stop="2528"/>
            <exon e_start="3502" e_stop="3687"/>
            <exon e_start="4071" e_stop="4454"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.534" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.905" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="101" e_stop="188" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="189" i_stop="362" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="363" e_stop="485" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.991">
            <gDNA_intron_boundary i_start="486" i_stop="1374" i_length="889"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="1375" e_stop="1455" e_length="81"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.534">
            <gDNA_intron_boundary i_start="1456" i_stop="1548" i_length="93"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="1549" e_stop="1637" e_length="89"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1638" i_stop="1725" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1726" e_stop="1800" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.984">
            <gDNA_intron_boundary i_start="1801" i_stop="2308" i_length="508"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2309" e_stop="2370" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.999">
            <gDNA_intron_boundary i_start="2371" i_stop="2459" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2460" e_stop="2528" e_length="69"/>
          </exon>
          <intron i_serial="7" don_prob="0.905" acc_prob="1.000">
            <gDNA_intron_boundary i_start="2529" i_stop="3501" i_length="973"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="3502" e_stop="3687" e_length="186"/>
          </exon>
          <intron i_serial="8" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="3688" i_stop="4070" i_length="383"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="4071" e_stop="4454" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101" stop="188"/>
              <exon start="363" stop="485"/>
              <exon start="1375" stop="1455"/>
              <exon start="1549" stop="1637"/>
              <exon start="1726" stop="1800"/>
              <exon start="2309" stop="2370"/>
              <exon start="2460" stop="2528"/>
              <exon start="3502" stop="3687"/>
              <exon start="4071" stop="4454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCGTAAACGAAGAAACGAAGCCGAAGAAGAGGGCTCTTCTTTCGTGGAGAAGAATAATACTAATCTTATCCTTATTCTTATACCAAG : ATGGATCGGTACCAGAAAGTGGAGAAGCCAAGGGTTGAGACACCTATTGATGCGAATGAGATTCGGATTACTAGTCAGGGAAGGATGCGAAGCTATATCACTTATGCTATGACCTTGCTTCAG : GAGAAAGAATCAGAGGAGATCGTGTTCAAGGCAATGGGCAGGGCAATCAACAAGACTGTGACAATTGTGGAATTGATCAAG : AGGAGAATTGTTGGTCTTCACCAAGTAACGTCTATTACATCCACTGATATAACTGATACATGGGAACCCCTTGAAGAAGGTCTCCTACC : TCTCGAGACCACCAGGCATGTATCCATGATTACAATTACCCTCGCCAAAAAGGAGCTGGATAAGAATGCTGTGGG : GTACCAACCACCATTGCCAGCAGACCAGGTGAAAGTGTCAACAGATTTTGACTATGATGGAG : AAGGATCTCCTAGTGGAGGACGAAGAGGCCGCGGTGGTCGAGGAAGGGGAAGGTCCAGAGGCTTTCCAG : GAAATGGATTTATGCCGGCTGAGTATGATGATGGTGGGTATGATCGCAATCGGAGCTATGGTAGGGGTAGGGGTCGAGGCAGAGGTCGTAGCTCCCGTGGCCGCGGAAGGGGAGGGTACAATGGTCCACAGGATGTCCAGCAAGATGGTGGCTTCTACAATCAAGAAGCTCCCATGCAGGGACGAG : GCCGTGGCCGTGGAAGGGGAACTCGCGGTAGGGGACGTGGATTCAGATCTAATGGGCCGATCCAAGGAGGTGGTGCTTAAATGGTCAAGCTTGAAGAATACAGAGATTATGTGCTATGAGTGCCTGCTCCATGTTCTATGTTTTTCATTCGTTAGTTACTCCGTGTTAACAGTAGGTTATCTATCTGTAATCAGAGTAGACTAATTATAGATTTCAGGACCGCCCGTATGTGGTGATGTTTTCTTTTCTTTGTTTTTCATGATATCTTCTATCTTTATTCTCTGCTTGATTAGGTGGTTGGTCAAGTGTAATTTCGTTAGTGAGCAGCACATTCTTTGATTTGTCTTTGTTTGTTGAAATGTTCAGTGTTGATCTTGTTCGTAA</gDNA_template>
            <first_frame> G  V  N  E  E  T  K  P  K  K  R  A  L  L  S  W  R  R  I  I  L  I  L  S  L  F  L  Y  Q   : D  G  S  V  P  E  S  G  E  A  K  G  *  D  T  Y  *  C  E  *  D  S  D  Y  *  S  G  K  D  A  K  L  Y  H  L  C  Y  D  L  A  S   : G  E  R  I  R  G  D  R  V  Q  G  N  G  Q  G  N  Q  Q  D  C  D  N  C  G  I  D  Q   : E  E  N  C  W  S  S  P  S  N  V  Y  Y  I  H  *  Y  N  *  Y  M  G  T  P  *  R  R  S  P  T  :  S  R  D  H  Q  A  C  I  H  D  Y  N  Y  P  R  Q  K  G  A  G  *  E  C  C  G  :  V  P  T  T  I  A  S  R  P  G  E  S  V  N  R  F  *  L  *  W  R :   R  I  S  *  W  R  T  K  R  P  R  W  S  R  K  G  K  V  Q  R  L  S  R :   K  W  I  Y  A  G  *  V  *  *  W  W  V  *  S  Q  S  E  L  W  *  G  *  G  S  R  Q  R  S  *  L  P  W  P  R  K  G  R  V  Q  W  S  T  G  C  P  A  R  W  W  L  L  Q  S  R  S  S  H  A  G  T  R :   P  W  P  W  K  G  N  S  R  *  G  T  W  I  Q  I  *  W  A  D  P  R  R  W  C  L  N  G  Q  A  *  R  I  Q  R  L  C  A  M  S  A  C  S  M  F  Y  V  F  H  S  L  V  T  P  C  *  Q  *  V  I  Y  L  *  S  E  *  T  N  Y  R  F  Q  D  R  P  Y  V  V  M  F  S  F  L  C  F  S  *  Y  L  L  S  L  F  S  A  *  L  G  G  W  S  S  V  I  S  L  V  S  S  T  F  F  D  L  S  L  F  V  E  M  F  S  V  D  L  V  R   </first_frame>
            <second_frame>  A  *  T  K  K  R  S  R  R  R  G  L  F  F  R  G  E  E  *  Y  *  S  Y  P  Y  S  Y  T  K  :  M  D  R  Y  Q  K  V  E  K  P  R  V  E  T  P  I  D  A  N  E  I  R  I  T  S  Q  G  R  M  R  S  Y  I  T  Y  A  M  T  L  L  Q  :  E  K  E  S  E  E  I  V  F  K  A  M  G  R  A  I  N  K  T  V  T  I  V  E  L  I  K  :  R  R  I  V  G  L  H  Q  V  T  S  I  T  S  T  D  I  T  D  T  W  E  P  L  E  E  G  L  L  P :   L  E  T  T  R  H  V  S  M  I  T  I  T  L  A  K  K  E  L  D  K  N  A  V  G :   Y  Q  P  P  L  P  A  D  Q  V  K  V  S  T  D  F  D  Y  D  G   : E  G  S  P  S  G  G  R  R  G  R  G  G  R  G  R  G  R  S  R  G  F  P   : G  N  G  F  M  P  A  E  Y  D  D  G  G  Y  D  R  N  R  S  Y  G  R  G  R  G  R  G  R  G  R  S  S  R  G  R  G  R  G  G  Y  N  G  P  Q  D  V  Q  Q  D  G  G  F  Y  N  Q  E  A  P  M  Q  G  R   : G  R  G  R  G  R  G  T  R  G  R  G  R  G  F  R  S  N  G  P  I  Q  G  G  G  A  *  M  V  K  L  E  E  Y  R  D  Y  V  L  *  V  P  A  P  C  S  M  F  F  I  R  *  L  L  R  V  N  S  R  L  S  I  C  N  Q  S  R  L  I  I  D  F  R  T  A  R  M  W  *  C  F  L  F  F  V  F  H  D  I  F  Y  L  Y  S  L  L  D  *  V  V  G  Q  V  *  F  R  *  *  A  A  H  S  L  I  C  L  C  L  L  K  C  S  V  L  I  L  F  V  </second_frame>
            <third_frame>   R  K  R  R  N  E  A  E  E  E  G  S  S  F  V  E  K  N  N  T  N  L  I  L  I  L  I  P  R :   W  I  G  T  R  K  W  R  S  Q  G  L  R  H  L  L  M  R  M  R  F  G  L  L  V  R  E  G  C  E  A  I  S  L  M  L  *  P  C  F  R :   R  K  N  Q  R  R  S  C  S  R  Q  W  A  G  Q  S  T  R  L  *  Q  L  W  N  *  S  R :   G  E  L  L  V  F  T  K  *  R  L  L  H  P  L  I  *  L  I  H  G  N  P  L  K  K  V  S  Y   : L  S  R  P  P  G  M  Y  P  *  L  Q  L  P  S  P  K  R  S  W  I  R  M  L  W   : G  T  N  H  H  C  Q  Q  T  R  *  K  C  Q  Q  I  L  T  M  M  E  :  K  D  L  L  V  E  D  E  E  A  A  V  V  E  E  G  E  G  P  E  A  F  Q  :  E  M  D  L  C  R  L  S  M  M  M  V  G  M  I  A  I  G  A  M  V  G  V  G  V  E  A  E  V  V  A  P  V  A  A  E  G  E  G  T  M  V  H  R  M  S  S  K  M  V  A  S  T  I  K  K  L  P  C  R  D  E  :  A  V  A  V  E  G  E  L  A  V  G  D  V  D  S  D  L  M  G  R  S  K  E  V  V  L  K  W  S  S  L  K  N  T  E  I  M  C  Y  E  C  L  L  H  V  L  C  F  S  F  V  S  Y  S  V  L  T  V  G  Y  L  S  V  I  R  V  D  *  L  *  I  S  G  P  P  V  C  G  D  V  F  F  S  L  F  F  M  I  S  S  I  F  I  L  C  L  I  R  W  L  V  K  C  N  F  V  S  E  Q  H  I  L  *  F  V  F  V  C  *  N  V  Q  C  *  S  C  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="165" stop="188"/>
                    <exon start="363" stop="485"/>
                    <exon start="1375" stop="1455"/>
                    <exon start="1549" stop="1637"/>
                    <exon start="1726" stop="1800"/>
                    <exon start="2309" stop="2370"/>
                    <exon start="2460" stop="2528"/>
                    <exon start="3502" stop="3687"/>
                    <exon start="4071" stop="4150"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SYPYSYTKMDRYQKVEKPRVETPIDANEIRITSQGRMRSYITYAMTLLQEKESEEIVFKAMGRAINKTVTIVELIKRRIVGLHQVTSITSTDITDTWEPLEEGLLPLETTRHVSMITITLAKKELDKNAVGYQPPLPADQVKVSTDFDYDGEGSPSGGRRGRGGRGRGRSRGFPGNGFMPAEYDDGGYDRNRSYGRGRGRGRGRSSRGRGRGGYNGPQDVQQDGGFYNQEAPMQGRGRGRGRGTRGRGRGFRSNGPIQGGGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="8809" PGL_stop="11577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8809" e_stop="9023"/>
            <exon e_start="9596" e_stop="9917"/>
            <exon e_start="10820" e_stop="11577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="8809" e_stop="9023" e_length="215"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9024" i_stop="9595" i_length="572"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9596" e_stop="9917" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9918" i_stop="10819" i_length="902"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="10820" e_stop="11577" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8809" stop="9023"/>
              <exon start="9596" stop="9917"/>
              <exon start="10820" stop="11569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10856" stop="11577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGACCATTATTTCTACAACACATACCATTTCTTCTTCCTCAATTTTTCTTCTATATTTTTCTTAAGAAAATGGCCAAAATTGGCATTTTAACATTAGGTTTCATATTTGTTTTTTGCAACATTTTGGTTAGTACTGCAAATGCTTTCTCTGCTTCTGGATGGATGAGTGCTCATGCTACTTTTTATGGAGGATCTGATGCTTCTGGCACAATGG : GGGGTGCTTGTGGCTATGGGAACTTGTACTCAACAGGTTATGGTACAAACACTGCTGCATTAAGTACTGCATTGTTCAATGATGGAGCATCATGTGGTCAATGTTACAAAATTATGTGTGATTATAATCAAGATTCTAAATGGTGCATAAAGGGAACATCTATTACAATTACAGCCACTAATTTTTGTCCACCAAATTTTGCACTTCCTAGCAATAATGGTGGATGGTGCAACCCACCAAGGCCACATTTTGACATGGCTCAACCTGCTTGGGAAAAAATTGGTATCTACAGAGGTGGCATTGTTCCCGTCATGTACCAAAG : GATTCCTTGTGTGAAAAAAGGTGGAGTTAGATTTACAATAAATGGAAGGGACTATTTTGAGCTATTAATGATAAGTAATGTAGGAGGGGCTGGATCAATTCAATCAGTACAAATTAAAGGATCAAGAACCAATTGGATGACAATGGCTAGAAATTGGGGGGCCAATTGGCAATCAAATGCATTTCTTAATGGACAATCTTTGTCATTTAAGGTCACAACATCAGATGGTGTCACTAAAACATTCTTAAATGTTGCTTCATCCAATTGGCGATTTGGACAAACATATTCAAGCTCTATTAACTTCTAATTTTAAAAAAAAAAAAAACAAAAGTCGAAAAGTTCGGGATTTGAAGTTTATGAGTTTATATTTATACGTGTGATAGGCAGCGGCGTGCTTACTGTTTTACTGAAAGCAGCCCGCCCCCCTTCCTCTGTCTTCTTTTATTCGATATTCGAAATATACTGGCTCGATTATTGATGAAGTAAGTTCATGAACTCTAGTCCGAAGGTGCTGGAAACATAAATATATTTGAAATTTATTGTGTGTATGTAGTGTAGTGTGAAATTTGCATATTTATTTTTTATATATCAAAAGAATATAATAAGACCTTTTGTCTTTGATGCAAATGTTTGTAGGTGCATCAAACATCTATACTTCTAATTTTTATTTTTATTTTTGCCCTCTATTGTAAGCTTGTATTGTAATAAGGTCATGTTATACATATATTGTATCAAATGTTCCTATGTTTTGCTTCAAA</gDNA_template>
            <first_frame> *  T  I  I  S  T  T  H  T  I  S  S  S  S  I  F  L  L  Y  F  S  *  E  N  G  Q  N  W  H  F  N  I  R  F  H  I  C  F  L  Q  H  F  G  *  Y  C  K  C  F  L  C  F  W  M  D  E  C  S  C  Y  F  L  W  R  I  *  C  F  W  H  N  G :   G  C  L  W  L  W  E  L  V  L  N  R  L  W  Y  K  H  C  C  I  K  Y  C  I  V  Q  *  W  S  I  M  W  S  M  L  Q  N  Y  V  *  L  *  S  R  F  *  M  V  H  K  G  N  I  Y  Y  N  Y  S  H  *  F  L  S  T  K  F  C  T  S  *  Q  *  W  W  M  V  Q  P  T  K  A  T  F  *  H  G  S  T  C  L  G  K  N  W  Y  L  Q  R  W  H  C  S  R  H  V  P  K  :  D  S  L  C  E  K  R  W  S  *  I  Y  N  K  W  K  G  L  F  *  A  I  N  D  K  *  C  R  R  G  W  I  N  S  I  S  T  N  *  R  I  K  N  Q  L  D  D  N  G  *  K  L  G  G  Q  L  A  I  K  C  I  S  *  W  T  I  F  V  I  *  G  H  N  I  R  W  C  H  *  N  I  L  K  C  C  F  I  Q  L  A  I  W  T  N  I  F  K  L  Y  *  L  L  I  L  K  K  K  K  T  K  V  E  K  F  G  I  *  S  L  *  V  Y  I  Y  T  C  D  R  Q  R  R  A  Y  C  F  T  E  S  S  P  P  P  F  L  C  L  L  L  F  D  I  R  N  I  L  A  R  L  L  M  K  *  V  H  E  L  *  S  E  G  A  G  N  I  N  I  F  E  I  Y  C  V  Y  V  V  *  C  E  I  C  I  F  I  F  Y  I  S  K  E  Y  N  K  T  F  C  L  *  C  K  C  L  *  V  H  Q  T  S  I  L  L  I  F  I  F  I  F  A  L  Y  C  K  L  V  L  *  *  G  H  V  I  H  I  L  Y  Q  M  F  L  C  F  A  S   </first_frame>
            <second_frame>  R  P  L  F  L  Q  H  I  P  F  L  L  P  Q  F  F  F  Y  I  F  L  K  K  M  A  K  I  G  I  L  T  L  G  F  I  F  V  F  C  N  I  L  V  S  T  A  N  A  F  S  A  S  G  W  M  S  A  H  A  T  F  Y  G  G  S  D  A  S  G  T  M   : G  G  A  C  G  Y  G  N  L  Y  S  T  G  Y  G  T  N  T  A  A  L  S  T  A  L  F  N  D  G  A  S  C  G  Q  C  Y  K  I  M  C  D  Y  N  Q  D  S  K  W  C  I  K  G  T  S  I  T  I  T  A  T  N  F  C  P  P  N  F  A  L  P  S  N  N  G  G  W  C  N  P  P  R  P  H  F  D  M  A  Q  P  A  W  E  K  I  G  I  Y  R  G  G  I  V  P  V  M  Y  Q  R :   I  P  C  V  K  K  G  G  V  R  F  T  I  N  G  R  D  Y  F  E  L  L  M  I  S  N  V  G  G  A  G  S  I  Q  S  V  Q  I  K  G  S  R  T  N  W  M  T  M  A  R  N  W  G  A  N  W  Q  S  N  A  F  L  N  G  Q  S  L  S  F  K  V  T  T  S  D  G  V  T  K  T  F  L  N  V  A  S  S  N  W  R  F  G  Q  T  Y  S  S  S  I  N  F  *  F  *  K  K  K  K  Q  K  S  K  S  S  G  F  E  V  Y  E  F  I  F  I  R  V  I  G  S  G  V  L  T  V  L  L  K  A  A  R  P  P  S  S  V  F  F  Y  S  I  F  E  I  Y  W  L  D  Y  *  *  S  K  F  M  N  S  S  P  K  V  L  E  T  *  I  Y  L  K  F  I  V  C  M  *  C  S  V  K  F  A  Y  L  F  F  I  Y  Q  K  N  I  I  R  P  F  V  F  D  A  N  V  C  R  C  I  K  H  L  Y  F  *  F  L  F  L  F  L  P  S  I  V  S  L  Y  C  N  K  V  M  L  Y  I  Y  C  I  K  C  S  Y  V  L  L  Q  </second_frame>
            <third_frame>   D  H  Y  F  Y  N  T  Y  H  F  F  F  L  N  F  S  S  I  F  F  L  R  K  W  P  K  L  A  F  *  H  *  V  S  Y  L  F  F  A  T  F  W  L  V  L  Q  M  L  S  L  L  L  D  G  *  V  L  M  L  L  F  M  E  D  L  M  L  L  A  Q  W  :  G  V  L  V  A  M  G  T  C  T  Q  Q  V  M  V  Q  T  L  L  H  *  V  L  H  C  S  M  M  E  H  H  V  V  N  V  T  K  L  C  V  I  I  I  K  I  L  N  G  A  *  R  E  H  L  L  Q  L  Q  P  L  I  F  V  H  Q  I  L  H  F  L  A  I  M  V  D  G  A  T  H  Q  G  H  I  L  T  W  L  N  L  L  G  K  K  L  V  S  T  E  V  A  L  F  P  S  C  T  K   : G  F  L  V  *  K  K  V  E  L  D  L  Q  *  M  E  G  T  I  L  S  Y  *  *  *  V  M  *  E  G  L  D  Q  F  N  Q  Y  K  L  K  D  Q  E  P  I  G  *  Q  W  L  E  I  G  G  P  I  G  N  Q  M  H  F  L  M  D  N  L  C  H  L  R  S  Q  H  Q  M  V  S  L  K  H  S  *  M  L  L  H  P  I  G  D  L  D  K  H  I  Q  A  L  L  T  S  N  F  K  K  K  K  N  K  S  R  K  V  R  D  L  K  F  M  S  L  Y  L  Y  V  *  *  A  A  A  C  L  L  F  Y  *  K  Q  P  A  P  L  P  L  S  S  F  I  R  Y  S  K  Y  T  G  S  I  I  D  E  V  S  S  *  T  L  V  R  R  C  W  K  H  K  Y  I  *  N  L  L  C  V  C  S  V  V  *  N  L  H  I  Y  F  L  Y  I  K  R  I  *  *  D  L  L  S  L  M  Q  M  F  V  G  A  S  N  I  Y  T  S  N  F  Y  F  Y  F  C  P  L  L  *  A  C  I  V  I  R  S  C  Y  T  Y  I  V  S  N  V  P  M  F  C  F  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8810" stop="9023"/>
                    <exon start="9596" stop="9917"/>
                    <exon start="10820" stop="11126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>840</number_coding_nucleotides>
                  <number_encoded_amino_acids>280</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RPLFLQHIPFLLPQFFFYIFLKKMAKIGILTLGFIFVFCNILVSTANAFSASGWMSAHATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSTALFNDGASCGQCYKIMCDYNQDSKWCIKGTSITITATNFCPPNFALPSNNGGWCNPPRPHFDMAQPAWEKIGIYRGGIVPVMYQRIPCVKKGGVRFTINGRDYFELLMISNVGGAGSIQSVQIKGSRTNWMTMARNWGANWQSNAFLNGQSLSFKVTTSDGVTKTFLNVASSNWRFGQTYSSSINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="14711" PGL_stop="16511"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14711" e_stop="14953"/>
            <exon e_start="15434" e_stop="15622"/>
            <exon e_start="16373" e_stop="16511"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14711" e_stop="14953" e_length="243"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.990">
            <gDNA_intron_boundary i_start="14954" i_stop="15433" i_length="480"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15434" e_stop="15622" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="15623" i_stop="16372" i_length="750"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="16373" e_stop="16511" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14711" stop="14953"/>
              <exon start="15434" stop="15622"/>
              <exon start="16373" stop="16511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331062" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTAACCACAAACAATATACTATAAGCTTTTAATTTTTGATAATTTTGATGGCATTACAAAGTGTTTTTGTAATTACTTTTGTGTTATTTTCATGTGTAAATGCACTTAGCTCCAATTACTATGATCAAACATGTCCAGATGCAGAATCAACTATTAGACAAGTTGTAAAAAAAGCAATGTCAAATGATAAAACAGTTCCAGCTGCTCTTTTGAGGATGCACTTTCATGATTGTTTTGTCAGG : GGTTGTGATGGCTCTGTGCTGTTGAATTCAACAAAAAACAACCAAGCGGAGAAAGATGGACCTCCAAATATTTCATTACATTCTTTTTATGTTATTGACGTTGCTAAGAAACAAATTGAAAATATGTGTCCTGGCGTTGTCTCTTGTGCTGATATTTTAGCTCTTGCAGCTAGAGATGCTGTCACTCTT : TCTGGAGGGCCTTATTGGGCCGTACCAAAAGGTAGAAAAGATGGAAGAATTTCTATAGCCAGTGAAACAAGACAATTACCTGGCCCAAATTTTAACATCTCTCAATTGCAACAAAGCTTCTCCCAAAGAGGCCTTTCTT</gDNA_template>
            <first_frame> I  N  H  K  Q  Y  T  I  S  F  *  F  L  I  I  L  M  A  L  Q  S  V  F  V  I  T  F  V  L  F  S  C  V  N  A  L  S  S  N  Y  Y  D  Q  T  C  P  D  A  E  S  T  I  R  Q  V  V  K  K  A  M  S  N  D  K  T  V  P  A  A  L  L  R  M  H  F  H  D  C  F  V  R  :  G  C  D  G  S  V  L  L  N  S  T  K  N  N  Q  A  E  K  D  G  P  P  N  I  S  L  H  S  F  Y  V  I  D  V  A  K  K  Q  I  E  N  M  C  P  G  V  V  S  C  A  D  I  L  A  L  A  A  R  D  A  V  T  L  :  S  G  G  P  Y  W  A  V  P  K  G  R  K  D  G  R  I  S  I  A  S  E  T  R  Q  L  P  G  P  N  F  N  I  S  Q  L  Q  Q  S  F  S  Q  R  G  L  S  </first_frame>
            <second_frame>  L  T  T  N  N  I  L  *  A  F  N  F  *  *  F  *  W  H  Y  K  V  F  L  *  L  L  L  C  Y  F  H  V  *  M  H  L  A  P  I  T  M  I  K  H  V  Q  M  Q  N  Q  L  L  D  K  L  *  K  K  Q  C  Q  M  I  K  Q  F  Q  L  L  F  *  G  C  T  F  M  I  V  L  S  G :   V  V  M  A  L  C  C  *  I  Q  Q  K  T  T  K  R  R  K  M  D  L  Q  I  F  H  Y  I  L  F  M  L  L  T  L  L  R  N  K  L  K  I  C  V  L  A  L  S  L  V  L  I  F  *  L  L  Q  L  E  M  L  S  L  F :   L  E  G  L  I  G  P  Y  Q  K  V  E  K  M  E  E  F  L  *  P  V  K  Q  D  N  Y  L  A  Q  I  L  T  S  L  N  C  N  K  A  S  P  K  E  A  F  L </second_frame>
            <third_frame>   *  P  Q  T  I  Y  Y  K  L  L  I  F  D  N  F  D  G  I  T  K  C  F  C  N  Y  F  C  V  I  F  M  C  K  C  T  *  L  Q  L  L  *  S  N  M  S  R  C  R  I  N  Y  *  T  S  C  K  K  S  N  V  K  *  *  N  S  S  S  C  S  F  E  D  A  L  S  *  L  F  C  Q   : G  L  *  W  L  C  A  V  E  F  N  K  K  Q  P  S  G  E  R  W  T  S  K  Y  F  I  T  F  F  L  C  Y  *  R  C  *  E  T  N  *  K  Y  V  S  W  R  C  L  L  C  *  Y  F  S  S  C  S  *  R  C  C  H  S   : F  W  R  A  L  L  G  R  T  K  R  *  K  R  W  K  N  F  Y  S  Q  *  N  K  T  I  T  W  P  K  F  *  H  L  S  I  A  T  K  L  L  P  K  R  P  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14744" stop="14953"/>
                    <exon start="15434" stop="15622"/>
                    <exon start="16373" stop="16510"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIILMALQSVFVITFVLFSCVNALSSNYYDQTCPDAESTIRQVVKKAMSNDKTVPAALLRMHFHDCFVRGCDGSVLLNSTKNNQAEKDGPPNISLHSFYVIDVAKKQIENMCPGVVSCADILALAARDAVTLSGGPYWAVPKGRKDGRISIASETRQLPGPNFNISQLQQSFSQRGLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17242" PGL_stop="16445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17242" e_stop="16445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="17242" e_stop="16445" e_length="798"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17242" stop="16445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328630" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTTGTTTATTTTTGCATATGTACAATCAAATCAATACAAATCCTCAAATTAATCCCTTCACAAACTCCTCTCCATCCTTAGAAACACACATTTGACATATTATTACCCACACAAATGAATAAAAAATCAAACCAAACCAAAAATTACAAGTTATTTTCGTGCAATAAAACATTCCTCTAATAAAAAAGGACTCCATGCTCAGACCAAGCTTCAATTAACAAATCTACAATCATGCCTTATTTCTTGACCAGAACCGCTGATACTGCTCATCTTAATCATTGAATCAGCAAAAGCTTTAAAGAACTCGTGTTGGGAATTGGCAAAATTTAAAACAAGTGTTTTGGTTCTTGAATTTGTGAGTAAAGTTGAATCAGAAGAAAAAAGACCTTTCTTTTGCAATATTAATTTATAATACGCGTTATCGAATAAAAATGTCGTAGTATCCATAGTAGCCCCTGCATTTTTTGTTGTGTTTTTAACAGGGCATATTTTCTTTAAATTAGCTGCAAACGATGCGTCTAGTGATGGATCGACGTCGTTTTTGCTATCGAAGTTTTCTATTCTGTTTCGGAATGATGAACAATGAGAAAATCCAAGAGTGTGTCCTCCTGAATATTAAAAAAAAAAAAAAGTTAGAAAAAAGTAATTTGATAATTTTATTATAAGTTCAGTAATTATACGTGAAATTAATTCGTAAATTATACCTGAAAGTGCAACCAAATCATCTAAAGAAAGGCCTCTTTGGGAGAAGCTTTGTTGCAATTGAGAGATGTTAAAATTTGGGCCAGGTAATTG</gDNA_template>
            <first_frame> E  V  V  Y  F  C  I  C  T  I  K  S  I  Q  I  L  K  L  I  P  S  Q  T  P  L  H  P  *  K  H  T  F  D  I  L  L  P  T  Q  M  N  K  K  S  N  Q  T  K  N  Y  K  L  F  S  C  N  K  T  F  L  *  *  K  R  T  P  C  S  D  Q  A  S  I  N  K  S  T  I  M  P  Y  F  L  T  R  T  A  D  T  A  H  L  N  H  *  I  S  K  S  F  K  E  L  V  L  G  I  G  K  I  *  N  K  C  F  G  S  *  I  C  E  *  S  *  I  R  R  K  K  T  F  L  L  Q  Y  *  F  I  I  R  V  I  E  *  K  C  R  S  I  H  S  S  P  C  I  F  C  C  V  F  N  R  A  Y  F  L  *  I  S  C  K  R  C  V  *  *  W  I  D  V  V  F  A  I  E  V  F  Y  S  V  S  E  *  *  T  M  R  K  S  K  S  V  S  S  *  I  L  K  K  K  K  S  *  K  K  V  I  *  *  F  Y  Y  K  F  S  N  Y  T  *  N  *  F  V  N  Y  T  *  K  C  N  Q  I  I  *  R  K  A  S  L  G  E  A  L  L  Q  L  R  D  V  K  I  W  A  R  *  L </first_frame>
            <second_frame>  K  L  F  I  F  A  Y  V  Q  S  N  Q  Y  K  S  S  N  *  S  L  H  K  L  L  S  I  L  R  N  T  H  L  T  Y  Y  Y  P  H  K  *  I  K  N  Q  T  K  P  K  I  T  S  Y  F  R  A  I  K  H  S  S  N  K  K  G  L  H  A  Q  T  K  L  Q  L  T  N  L  Q  S  C  L  I  S  *  P  E  P  L  I  L  L  I  L  I  I  E  S  A  K  A  L  K  N  S  C  W  E  L  A  K  F  K  T  S  V  L  V  L  E  F  V  S  K  V  E  S  E  E  K  R  P  F  F  C  N  I  N  L  *  Y  A  L  S  N  K  N  V  V  V  S  I  V  A  P  A  F  F  V  V  F  L  T  G  H  I  F  F  K  L  A  A  N  D  A  S  S  D  G  S  T  S  F  L  L  S  K  F  S  I  L  F  R  N  D  E  Q  *  E  N  P  R  V  C  P  P  E  Y  *  K  K  K  K  V  R  K  K  *  F  D  N  F  I  I  S  S  V  I  I  R  E  I  N  S  *  I  I  P  E  S  A  T  K  S  S  K  E  R  P  L  W  E  K  L  C  C  N  *  E  M  L  K  F  G  P  G  N   </second_frame>
            <third_frame>   S  C  L  F  L  H  M  Y  N  Q  I  N  T  N  P  Q  I  N  P  F  T  N  S  S  P  S  L  E  T  H  I  *  H  I  I  T  H  T  N  E  *  K  I  K  P  N  Q  K  L  Q  V  I  F  V  Q  *  N  I  P  L  I  K  K  D  S  M  L  R  P  S  F  N  *  Q  I  Y  N  H  A  L  F  L  D  Q  N  R  *  Y  C  S  S  *  S  L  N  Q  Q  K  L  *  R  T  R  V  G  N  W  Q  N  L  K  Q  V  F  W  F  L  N  L  *  V  K  L  N  Q  K  K  K  D  L  S  F  A  I  L  I  Y  N  T  R  Y  R  I  K  M  S  *  Y  P  *  *  P  L  H  F  L  L  C  F  *  Q  G  I  F  S  L  N  *  L  Q  T  M  R  L  V  M  D  R  R  R  F  C  Y  R  S  F  L  F  C  F  G  M  M  N  N  E  K  I  Q  E  C  V  L  L  N  I  K  K  K  K  K  L  E  K  S  N  L  I  I  L  L  *  V  Q  *  L  Y  V  K  L  I  R  K  L  Y  L  K  V  Q  P  N  H  L  K  K  G  L  F  G  R  S  F  V  A  I  E  R  C  *  N  L  G  Q  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="17873" PGL_stop="20698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17873" e_stop="18146"/>
            <exon e_start="18265" e_stop="18313"/>
            <exon e_start="18429" e_stop="18555"/>
            <exon e_start="19273" e_stop="19343"/>
            <exon e_start="19417" e_stop="19489"/>
            <exon e_start="20108" e_stop="20698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="0.996"/>
          <exon-intron don_prob="0.997" acc_prob="0.938" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.980" e_score="0.992"/>
          <exon-intron don_prob="0.821" acc_prob="0.991" e_score="0.986"/>
          <exon-intron don_prob="0.815" acc_prob="1.000" e_score="0.973"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="17873" e_stop="18146" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="18147" i_stop="18264" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="18265" e_stop="18313" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.938">
            <gDNA_intron_boundary i_start="18314" i_stop="18428" i_length="115"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="18429" e_stop="18555" e_length="127"/>
          </exon>
          <intron i_serial="3" don_prob="0.908" acc_prob="0.980">
            <gDNA_intron_boundary i_start="18556" i_stop="19272" i_length="717"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="19273" e_stop="19343" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.821" acc_prob="0.991">
            <gDNA_intron_boundary i_start="19344" i_stop="19416" i_length="73"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="19417" e_stop="19489" e_length="73"/>
          </exon>
          <intron i_serial="5" don_prob="0.815" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19490" i_stop="20107" i_length="618"/>
          </intron>
          <exon e_serial="6" e_score="0.997">
            <gDNA_exon_boundary e_start="20108" e_stop="20698" e_length="591"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17873" stop="18146"/>
              <exon start="18265" stop="18313"/>
              <exon start="18429" stop="18555"/>
              <exon start="19273" stop="19343"/>
              <exon start="19417" stop="19489"/>
              <exon start="20108" stop="20698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320359" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCCGTCGACTTCAACTGGCCGGAGTTGCTTCCAATTTCCGATGACGGAGCAAAACGCTGACGAAGCCAACACTGTTCAAACTTCGAATATTGACAATGTAGAACTGGCAATAGTTGATGGCTCTCATTCCGACACCGCCCAGAAATCAGAACCACTAATTGAAGAACTACAAGATGAAGAACTAAGGAAACTTTTGGTGCCGAAGTTAGAAAACCTCCCAATTTCTCCTCCTTCTGCTGTTGAATCCAATTTCGTCACCTATTTTGCTCCTG : ATTTTATGAAACCTGGGCATGATCAGTATGTTCATCGACATGCCAATGG : ATTGTGCATAATTGGGTTGGCTCCGACCCACATTGCTTTTAAGGATGAAGGCGGAGTTACTTCGGTTGATTTCAATGTGGGGAAGTCTGATCGGAGTGGAATCAAGGTCTCTGGAAAGCGAAAAAAG : AACGCTCAACATTTTGAGTCTAATACAGCATTATGTAAAGCCTGCACAAAGGATGGTTCTTATATTGTGAG : GTGTTGTGTGAAAGGCTCGTTATTAGAAGTCAATGATAGGTTAATTAAGCAACCAGAATTGCTGAACTCATTG : GCAGACAGAGAAGGATATATTGCAATTATAATGCCAAGGCCCGCAGATTGGATCAAGGCCAAGACAACTTTGCTGGGCATTGAAGAATATAGAGAGTTGAGAAAGGATACATTGCAATTATAAACAAGCAAGGTGACAAATCAGCTCATTGAAGGCAGCATTTTGCAGGATTGGAGTTTACGTTGTTGGAAAAGTTTGCAGGATGTTCTCTCTCTGTAACAGTAAGCTCTACTACTTCACTACACACTTCTGCTATTGGCATACAGAAGAACAGTATCAAACTTAATTAACGTTCTTATTTGTACTTTTCTGGTGTATTATTTGGATGGGGTGGAGTTTACTTGTCCACAATGCTCCATCACTCCATATTTTGTTTTTCAGAGCAATATGATAAAAAAACATATAGTCCGTAGTTACTATATGAAAATGTAACATGTCTATTATATTGCTAATTTTCTAGAACATGAAAAATGAGAAGAATTTGTACTTTCTATGACCTCCCATTAAGTTTACAAGAAAACAAAATGGAGGAAAAGAATTGTTCCATTATTAAAGACAAAAAACACGAAAAATTTACTTGTCTTTGTTGTC</gDNA_template>
            <first_frame> P  P  S  T  S  T  G  R  S  C  F  Q  F  P  M  T  E  Q  N  A  D  E  A  N  T  V  Q  T  S  N  I  D  N  V  E  L  A  I  V  D  G  S  H  S  D  T  A  Q  K  S  E  P  L  I  E  E  L  Q  D  E  E  L  R  K  L  L  V  P  K  L  E  N  L  P  I  S  P  P  S  A  V  E  S  N  F  V  T  Y  F  A  P   : D  F  M  K  P  G  H  D  Q  Y  V  H  R  H  A  N  G :   L  C  I  I  G  L  A  P  T  H  I  A  F  K  D  E  G  G  V  T  S  V  D  F  N  V  G  K  S  D  R  S  G  I  K  V  S  G  K  R  K  K  :  N  A  Q  H  F  E  S  N  T  A  L  C  K  A  C  T  K  D  G  S  Y  I  V  R :   C  C  V  K  G  S  L  L  E  V  N  D  R  L  I  K  Q  P  E  L  L  N  S  L  :  A  D  R  E  G  Y  I  A  I  I  M  P  R  P  A  D  W  I  K  A  K  T  T  L  L  G  I  E  E  Y  R  E  L  R  K  D  T  L  Q  L  *  T  S  K  V  T  N  Q  L  I  E  G  S  I  L  Q  D  W  S  L  R  C  W  K  S  L  Q  D  V  L  S  L  *  Q  *  A  L  L  L  H  Y  T  L  L  L  L  A  Y  R  R  T  V  S  N  L  I  N  V  L  I  C  T  F  L  V  Y  Y  L  D  G  V  E  F  T  C  P  Q  C  S  I  T  P  Y  F  V  F  Q  S  N  M  I  K  K  H  I  V  R  S  Y  Y  M  K  M  *  H  V  Y  Y  I  A  N  F  L  E  H  E  K  *  E  E  F  V  L  S  M  T  S  H  *  V  Y  K  K  T  K  W  R  K  R  I  V  P  L  L  K  T  K  N  T  K  N  L  L  V  F  V  V </first_frame>
            <second_frame>  L  R  R  L  Q  L  A  G  V  A  S  N  F  R  *  R  S  K  T  L  T  K  P  T  L  F  K  L  R  I  L  T  M  *  N  W  Q  *  L  M  A  L  I  P  T  P  P  R  N  Q  N  H  *  L  K  N  Y  K  M  K  N  *  G  N  F  W  C  R  S  *  K  T  S  Q  F  L  L  L  L  L  L  N  P  I  S  S  P  I  L  L  L  :  I  L  *  N  L  G  M  I  S  M  F  I  D  M  P  M   : D  C  A  *  L  G  W  L  R  P  T  L  L  L  R  M  K  A  E  L  L  R  L  I  S  M  W  G  S  L  I  G  V  E  S  R  S  L  E  S  E  K  R :   T  L  N  I  L  S  L  I  Q  H  Y  V  K  P  A  Q  R  M  V  L  I  L  *   : G  V  V  *  K  A  R  Y  *  K  S  M  I  G  *  L  S  N  Q  N  C  *  T  H  W :   Q  T  E  K  D  I  L  Q  L  *  C  Q  G  P  Q  I  G  S  R  P  R  Q  L  C  W  A  L  K  N  I  E  S  *  E  R  I  H  C  N  Y  K  Q  A  R  *  Q  I  S  S  L  K  A  A  F  C  R  I  G  V  Y  V  V  G  K  V  C  R  M  F  S  L  C  N  S  K  L  Y  Y  F  T  T  H  F  C  Y  W  H  T  E  E  Q  Y  Q  T  *  L  T  F  L  F  V  L  F  W  C  I  I  W  M  G  W  S  L  L  V  H  N  A  P  S  L  H  I  L  F  F  R  A  I  *  *  K  N  I  *  S  V  V  T  I  *  K  C  N  M  S  I  I  L  L  I  F  *  N  M  K  N  E  K  N  L  Y  F  L  *  P  P  I  K  F  T  R  K  Q  N  G  G  K  E  L  F  H  Y  *  R  Q  K  T  R  K  I  Y  L  S  L  L   </second_frame>
            <third_frame>   S  V  D  F  N  W  P  E  L  L  P  I  S  D  D  G  A  K  R  *  R  S  Q  H  C  S  N  F  E  Y  *  Q  C  R  T  G  N  S  *  W  L  S  F  R  H  R  P  E  I  R  T  T  N  *  R  T  T  R  *  R  T  K  E  T  F  G  A  E  V  R  K  P  P  N  F  S  S  F  C  C  *  I  Q  F  R  H  L  F  C  S  * :   F  Y  E  T  W  A  *  S  V  C  S  S  T  C  Q  W  :  I  V  H  N  W  V  G  S  D  P  H  C  F  *  G  *  R  R  S  Y  F  G  *  F  Q  C  G  E  V  *  S  E  W  N  Q  G  L  W  K  A  K  K   : E  R  S  T  F  *  V  *  Y  S  I  M  *  S  L  H  K  G  W  F  L  Y  C  E  :  V  L  C  E  R  L  V  I  R  S  Q  *  *  V  N  *  A  T  R  I  A  E  L  I   : G  R  Q  R  R  I  Y  C  N  Y  N  A  K  A  R  R  L  D  Q  G  Q  D  N  F  A  G  H  *  R  I  *  R  V  E  K  G  Y  I  A  I  I  N  K  Q  G  D  K  S  A  H  *  R  Q  H  F  A  G  L  E  F  T  L  L  E  K  F  A  G  C  S  L  S  V  T  V  S  S  T  T  S  L  H  T  S  A  I  G  I  Q  K  N  S  I  K  L  N  *  R  S  Y  L  Y  F  S  G  V  L  F  G  W  G  G  V  Y  L  S  T  M  L  H  H  S  I  F  C  F  S  E  Q  Y  D  K  K  T  Y  S  P  *  L  L  Y  E  N  V  T  C  L  L  Y  C  *  F  S  R  T  *  K  M  R  R  I  C  T  F  Y  D  L  P  L  S  L  Q  E  N  K  M  E  E  K  N  C  S  I  I  K  D  K  K  H  E  K  F  T  C  L  C  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17873" stop="18146"/>
                    <exon start="18265" stop="18313"/>
                    <exon start="18429" stop="18555"/>
                    <exon start="19273" stop="19343"/>
                    <exon start="19417" stop="19489"/>
                    <exon start="20108" stop="20230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PPSTSTGRSCFQFPMTEQNADEANTVQTSNIDNVELAIVDGSHSDTAQKSEPLIEELQDEELRKLLVPKLENLPISPPSAVESNFVTYFAPDFMKPGHDQYVHRHANGLCIIGLAPTHIAFKDEGGVTSVDFNVGKSDRSGIKVSGKRKKNAQHFESNTALCKACTKDGSYIVRCCVKGSLLEVNDRLIKQPELLNSLADREGYIAIIMPRPADWIKAKTTLLGIEEYRELRKDTLQL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20333" stop="20539"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALLLHYTLLLLAYRRTVSNLINVLICTFLVYYLDGVEFTCPQCSITPYFVFQSNMIKKHIVRSYYMKM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="30785" PGL_stop="36183"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30785" e_stop="31458"/>
            <exon e_start="35548" e_stop="35818"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.997"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="30785" e_stop="31458" e_length="674"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31459" i_stop="35547" i_length="4089"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="35548" e_stop="35818" e_length="271"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30785" stop="31458"/>
              <exon start="35548" stop="35818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319747" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAACCCTAAAATTTACAGCCTTTCTCTCTCACACCTGATGCTTTCTAAAAACCTCAATTTTCTTCTCATCACTCTTCCTTGAATTTCGTGCCTGATTTTCATCTTTTTTCTCTCTGCATTTTTGTTTAATCTCTTTGATTCTGTTGATCGGTACTGGGTTTTTTTTTCTGAATTTTTTTTTGATTTTTTTGTTTTGGTTTTGAATGGCCACGCCGCCGCCGGATTCTTCTGCTAGTCCACCGGCGGCCAATACAGATGGTGTCGCCGTTGTGACATCCGGCGCCGGTGCAGCGGCCGTCGGGGCTACTGTCAGCAGTCCTCAAGCTCGCCGGAGTTTGCAAGCACCATGGGCTCAAGTGGTTCGTGGAGGAGAGGTTGAAGCAGTATCAGTGTCAAGTCCTCGCTCGCCGTCACCGATGGCAGCGGCTGCAGGTGTTTCGCCGGAGAAAATTTCGCTGTCGGATGATTGCTCGACCCAGAAGATTTCGCCGGAGATTTCTACTTCCGGTGCTCTGCCGGAGAGTGCTGATAGCAATGAGGGCAATGTAGGTCGGCCGAAGAAGCCTGCTTGGAATAAACCTGTAAACGGTGTAGTTGAGGCGGTTTCTGTTATGGGTGGGGCTGTTTCCTGGCCTGCTCTCTCTGAGTCTACTCGGCCTAGCCCAAAATCAG : CTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTG</gDNA_template>
            <first_frame> *  N  P  K  I  Y  S  L  S  L  S  H  L  M  L  S  K  N  L  N  F  L  L  I  T  L  P  *  I  S  C  L  I  F  I  F  F  L  S  A  F  L  F  N  L  F  D  S  V  D  R  Y  W  V  F  F  S  E  F  F  F  D  F  F  V  L  V  L  N  G  H  A  A  A  G  F  F  C  *  S  T  G  G  Q  Y  R  W  C  R  R  C  D  I  R  R  R  C  S  G  R  R  G  Y  C  Q  Q  S  S  S  S  P  E  F  A  S  T  M  G  S  S  G  S  W  R  R  G  *  S  S  I  S  V  K  S  S  L  A  V  T  D  G  S  G  C  R  C  F  A  G  E  N  F  A  V  G  *  L  L  D  P  E  D  F  A  G  D  F  Y  F  R  C  S  A  G  E  C  *  *  Q  *  G  Q  C  R  S  A  E  E  A  C  L  E  *  T  C  K  R  C  S  *  G  G  F  C  Y  G  W  G  C  F  L  A  C  S  L  *  V  Y  S  A  *  P  K  I  S :   Y  K  Y  Q  Q  C  Y  R  S  D  R  C  S  T  G  G  S  C  W  W  L  I  G  R  I  S  *  S  I  K  P  S  S  R  R  R  R  R  W  R  G  K  Y  L  Y  Q  P  C  M  K  *  Y  C  R  F  C  N  E  W  Q  L  C  F  A  F  *  F  K  G  R  C  I  W  K  G  Y  T  Y  I  I  C  C  P  C  W  R  P  Y  F  L </first_frame>
            <second_frame>  E  T  L  K  F  T  A  F  L  S  H  T  *  C  F  L  K  T  S  I  F  F  S  S  L  F  L  E  F  R  A  *  F  S  S  F  F  S  L  H  F  C  L  I  S  L  I  L  L  I  G  T  G  F  F  F  L  N  F  F  L  I  F  L  F  W  F  *  M  A  T  P  P  P  D  S  S  A  S  P  P  A  A  N  T  D  G  V  A  V  V  T  S  G  A  G  A  A  A  V  G  A  T  V  S  S  P  Q  A  R  R  S  L  Q  A  P  W  A  Q  V  V  R  G  G  E  V  E  A  V  S  V  S  S  P  R  S  P  S  P  M  A  A  A  A  G  V  S  P  E  K  I  S  L  S  D  D  C  S  T  Q  K  I  S  P  E  I  S  T  S  G  A  L  P  E  S  A  D  S  N  E  G  N  V  G  R  P  K  K  P  A  W  N  K  P  V  N  G  V  V  E  A  V  S  V  M  G  G  A  V  S  W  P  A  L  S  E  S  T  R  P  S  P  K  S   : A  T  N  I  S  S  A  T  E  V  T  D  A  Q  L  E  V  A  A  G  G  S  S  D  E  S  A  N  Q  S  N  P  A  Q  E  E  G  G  A  G  V  E  N  I  S  T  N  H  A  *  N  N  T  V  D  F  A  T  S  G  N  S  V  L  H  S  D  L  K  E  G  V  F  G  R  V  I  H  T  S  F  A  A  L  V  G  G  H  T  F   </second_frame>
            <third_frame>   K  P  *  N  L  Q  P  F  S  L  T  P  D  A  F  *  K  P  Q  F  S  S  H  H  S  S  L  N  F  V  P  D  F  H  L  F  S  L  C  I  F  V  *  S  L  *  F  C  *  S  V  L  G  F  F  F  *  I  F  F  *  F  F  C  F  G  F  E  W  P  R  R  R  R  I  L  L  L  V  H  R  R  P  I  Q  M  V  S  P  L  *  H  P  A  P  V  Q  R  P  S  G  L  L  S  A  V  L  K  L  A  G  V  C  K  H  H  G  L  K  W  F  V  E  E  R  L  K  Q  Y  Q  C  Q  V  L  A  R  R  H  R  W  Q  R  L  Q  V  F  R  R  R  K  F  R  C  R  M  I  A  R  P  R  R  F  R  R  R  F  L  L  P  V  L  C  R  R  V  L  I  A  M  R  A  M  *  V  G  R  R  S  L  L  G  I  N  L  *  T  V  *  L  R  R  F  L  L  W  V  G  L  F  P  G  L  L  S  L  S  L  L  G  L  A  Q  N  Q  :  L  Q  I  S  A  V  L  Q  K  *  P  M  L  N  W  R  *  L  L  V  A  H  R  T  N  Q  L  I  N  Q  T  Q  L  K  K  K  A  A  L  A  W  K  I  S  L  P  T  M  H  E  I  I  L  S  I  L  Q  R  V  A  T  L  F  C  I  L  I  *  R  K  V  Y  L  E  G  L  Y  I  H  H  L  L  P  L  L  E  A  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30990" stop="31458"/>
                    <exon start="35548" stop="35696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MATPPPDSSASPPAANTDGVAVVTSGAGAAAVGATVSSPQARRSLQAPWAQVVRGGEVEAVSVSSPRSPSPMAAAAGVSPEKISLSDDCSTQKISPEISTSGALPESADSNEGNVGRPKKPAWNKPVNGVVEAVSVMGGAVSWPALSESTRPSPKSATNISSATEVTDAQLEVAAGGSSDESANQSNPAQEEGGAGVENISTNHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33933" e_stop="34690"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33933" e_stop="34690" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33933" stop="34690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327676" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATCCAATGGATACAGACAAATGATTGCATGCCTAAGTCTAGAATTTGGTTCAATGTCCAAGTAGATTTTAGCACTCTTTATGGGATCTTTAAATAGTGGAATTATTACAAATAAGGCTTTGGATCTCGTCAATGCTTTTAGGACTTCTGTTATTCCTATTGTCCAGATTATTTAACCGTTTTCTCTTGGTGGAATTCTATATGTTCGAGTATTGATTATGGCAATACTATAAGATGTCTGACTTTTTTTTACTTTGAGATTTGCAATTTTGTCTTTTATAGAGGGCTTTATTATAACTAATCTACTGTAATCTGCAATCATATTATGTGTTATGTTACTTGACTATTCATTTGACTGAAACATACATATCTGCAAAATACACCCAAAAAAGCCGTACTAAATATCAGTGGCCCCCCCATAAATCTATACTATTGGATTTTAAAAATCAGTAGAATGTTATATATGGGATTTAAACCTGTGATCTAAAGCAATTTCTTAACCTCCTTTGACTCTTCACTAAACTTTTTCTTATAGCAAGGGCATCCAACAACTTATGTGTAACTAAAAAAATTGCTTTTACCCTATCAAACAGTATACTTTTCAATGAAGGGGATTCAATTTTCATCAACTTAGACTTGCCACTGCTAAATATGCCCAATATTGAAACCATATGTGTATGCAATTTCCATACTTGTTTCCTCGTAATATCTATTGTTTGTTCTTGACATGCTTTTACAATATAGTAGTACA</gDNA_template>
            <first_frame> F  F  L  S  N  G  Y  R  Q  M  I  A  C  L  S  L  E  F  G  S  M  S  K  *  I  L  A  L  F  M  G  S  L  N  S  G  I  I  T  N  K  A  L  D  L  V  N  A  F  R  T  S  V  I  P  I  V  Q  I  I  *  P  F  S  L  G  G  I  L  Y  V  R  V  L  I  M  A  I  L  *  D  V  *  L  F  F  T  L  R  F  A  I  L  S  F  I  E  G  F  I  I  T  N  L  L  *  S  A  I  I  L  C  V  M  L  L  D  Y  S  F  D  *  N  I  H  I  C  K  I  H  P  K  K  P  Y  *  I  S  V  A  P  P  *  I  Y  T  I  G  F  *  K  S  V  E  C  Y  I  W  D  L  N  L  *  S  K  A  I  S  *  P  P  L  T  L  H  *  T  F  S  Y  S  K  G  I  Q  Q  L  M  C  N  *  K  N  C  F  Y  P  I  K  Q  Y  T  F  Q  *  R  G  F  N  F  H  Q  L  R  L  A  T  A  K  Y  A  Q  Y  *  N  H  M  C  M  Q  F  P  Y  L  F  P  R  N  I  Y  C  L  F  L  T  C  F  Y  N  I  V  V   </first_frame>
            <second_frame>  F  F  Y  P  M  D  T  D  K  *  L  H  A  *  V  *  N  L  V  Q  C  P  S  R  F  *  H  S  L  W  D  L  *  I  V  E  L  L  Q  I  R  L  W  I  S  S  M  L  L  G  L  L  L  F  L  L  S  R  L  F  N  R  F  L  L  V  E  F  Y  M  F  E  Y  *  L  W  Q  Y  Y  K  M  S  D  F  F  L  L  *  D  L  Q  F  C  L  L  *  R  A  L  L  *  L  I  Y  C  N  L  Q  S  Y  Y  V  L  C  Y  L  T  I  H  L  T  E  T  Y  I  S  A  K  Y  T  Q  K  S  R  T  K  Y  Q  W  P  P  H  K  S  I  L  L  D  F  K  N  Q  *  N  V  I  Y  G  I  *  T  C  D  L  K  Q  F  L  N  L  L  *  L  F  T  K  L  F  L  I  A  R  A  S  N  N  L  C  V  T  K  K  I  A  F  T  L  S  N  S  I  L  F  N  E  G  D  S  I  F  I  N  L  D  L  P  L  L  N  M  P  N  I  E  T  I  C  V  C  N  F  H  T  C  F  L  V  I  S  I  V  C  S  *  H  A  F  T  I  *  *  Y  </second_frame>
            <third_frame>   F  F  I  Q  W  I  Q  T  N  D  C  M  P  K  S  R  I  W  F  N  V  Q  V  D  F  S  T  L  Y  G  I  F  K  *  W  N  Y  Y  K  *  G  F  G  S  R  Q  C  F  *  D  F  C  Y  S  Y  C  P  D  Y  L  T  V  F  S  W  W  N  S  I  C  S  S  I  D  Y  G  N  T  I  R  C  L  T  F  F  Y  F  E  I  C  N  F  V  F  Y  R  G  L  Y  Y  N  *  S  T  V  I  C  N  H  I  M  C  Y  V  T  *  L  F  I  *  L  K  H  T  Y  L  Q  N  T  P  K  K  A  V  L  N  I  S  G  P  P  I  N  L  Y  Y  W  I  L  K  I  S  R  M  L  Y  M  G  F  K  P  V  I  *  S  N  F  L  T  S  F  D  S  S  L  N  F  F  L  *  Q  G  H  P  T  T  Y  V  *  L  K  K  L  L  L  P  Y  Q  T  V  Y  F  S  M  K  G  I  Q  F  S  S  T  *  T  C  H  C  *  I  C  P  I  L  K  P  Y  V  Y  A  I  S  I  L  V  S  S  *  Y  L  L  F  V  L  D  M  L  L  Q  Y  S  S  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34450" stop="34665"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LFTKLFLIARASNNLCVTKKIAFTLSNSILFNEGDSIFINLDLPLLNMPNIETICVCNFHTCFLVISIVCS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="31487" e_stop="31505"/>
            <exon e_start="31680" e_stop="32214"/>
            <exon e_start="32288" e_stop="32441"/>
            <exon e_start="32606" e_stop="32696"/>
            <exon e_start="34731" e_stop="34817"/>
            <exon e_start="35400" e_stop="36183"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.817" acc_prob="0.999" e_score="0.989"/>
          <exon-intron don_prob="0.961" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="31487" e_stop="31505" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31506" i_stop="31679" i_length="174"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31680" e_stop="32214" e_length="535"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32215" i_stop="32287" i_length="73"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="32288" e_stop="32441" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32442" i_stop="32605" i_length="164"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="32606" e_stop="32696" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.817" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32697" i_stop="34730" i_length="2034"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="34731" e_stop="34817" e_length="87"/>
          </exon>
          <intron i_serial="5" don_prob="0.961" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34818" i_stop="35399" i_length="582"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="35400" e_stop="36183" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31487" stop="31505"/>
              <exon start="31680" stop="32214"/>
              <exon start="32288" stop="32441"/>
              <exon start="32606" stop="32696"/>
              <exon start="34731" stop="34817"/>
              <exon start="35400" stop="36183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCGGTTTCTGTTTCTCAG : GGTCCAATAATTTCTCAGTCACCTCAAAAACAGGCTAATGTTAATGCAAACACAAATTCAAATGCAAATCCTACAACCCCTGTTAGACAAAGATCAATAAAATACAGAGGTAGTAGCAGCAGTGGTGGTGGTGGTGGTAGTGGTCCAGGTGCTGGAGCATTTATTAGAACTCCGCCTCCACCTCCACCTCCATTGCCTCCTCCTTTTCCTGTAATGCATTTCCCACCTGTTCTTGAGCCTCCTGTAAGAGGTGCAAGACCTGTTGGAGGATTTCCGTCTCAGCCGCATGGAGTAAATGATCATTCTTCCCATAGAAATCATGGCAGGAAAGGTAACTTTGGGGGCCGACCTCGTGGAGATGGGTCTTATCATAACAATCATGGGGGAAGGCGTGATCAAGATCGGAGAGACGTTCATATGGGTCCTCCATTTGCTCCTCCTCCTCATGCAGCGTTTATGCGAGCTCCACTCCCTGGTTCTGGTCCATTTCTTCCAACCCCTATGAGAACACCTTTTGTTAATCAGATGGCATATG : ATATGACTCCCTTCTTTTACGTTCCTCCACTGAGTCCGGAGCCCTATAGTGCTGTGCCTATCATCAACCAAGCTCCACAATTACCCCAACATTTACCTTTAGTGGATCCAAATTTGCCTTCCTCCTTGGTTAATCAGATAGAGTATTACTTCAG : TGATGCTAATCTTGTAAAAGATGACTTTTTGAGGGTAAAGATGGATGAGGAAGGGTGGGTTCCAATGCATCTGATTGCTAACTTTCCTCGA : GTTAAGAAAATGACAGAGAAGGTCCAGTCTGATATTATCCAGTTCATTTTGTATTGTTTGAGGGCTTCAACGTTTGTAGAAGTGCAG : GATGACAAGGTAAGGAGACGGGATGGTTGGAGGAAATGGACTCGTACTGCTGGCCAGCTTGCAGCTGATTCAGGTTTGTCCACACCTGTTGCATCGTCAGATGGTGGTCCAACAGCTTCCTTGCAGAATGTCTCTGAGAATGAATCAGCTACAAATATCAGCAGTGCTACAGAAGTGACCGATGCTCAACTGGAGGTAGCTGCTGGTGGCTCATCGGACGAATCAGCTAATCAATCAAACCCAGCTCAAGAAGAAGGCGGCGCTGGCGTGGAAAATATCTCTACCAACCATGCATGAAATAATACTGTCGATTTTGCAACGAGTGGCAACTCTGTTTTGCATTCTGATTTAAAGGAAGGTGTATTTGGAAGGGTTATACATACATCATTTGCTGCCCTTGTTGGAGGCCATACTTTTTGCAGTTTTTGAGGTGAGTGGAAGAGTTAAACTAATGTGTAAGTTATCTGGTATAGAGAGTGGAACGATAGTGGAGATTAAAAGGATATACAGTTGAGCTTGAGACTTTCGAGTCGTTTGGCTCGTATACTTGCATCACATATGCAGGCTGGTATTCCATTGTGATTCAATGGAGTGAATTTGGATTTTGAGCCTAAGGTTTAACTTTTTTGGGTTGAAACTTTACCTCCATTTCAGAGGAAACATTCTGAAAATGTAGATTTAGTGCTTGGCTGGTATCCAGAGTGATTGTGCTCTGCTGATTTTGTTATACTTATCTAGGCATATTGATTGTTTTAAATTATTTTTTCTTTTTTGCATCTCATTA</gDNA_template>
            <first_frame> I  G  F  C  F  S   : G  S  N  N  F  S  V  T  S  K  T  G  *  C  *  C  K  H  K  F  K  C  K  S  Y  N  P  C  *  T  K  I  N  K  I  Q  R  *  *  Q  Q  W  W  W  W  W  *  W  S  R  C  W  S  I  Y  *  N  S  A  S  T  S  T  S  I  A  S  S  F  S  C  N  A  F  P  T  C  S  *  A  S  C  K  R  C  K  T  C  W  R  I  S  V  S  A  A  W  S  K  *  S  F  F  P  *  K  S  W  Q  E  R  *  L  W  G  P  T  S  W  R  W  V  L  S  *  Q  S  W  G  K  A  *  S  R  S  E  R  R  S  Y  G  S  S  I  C  S  S  S  S  C  S  V  Y  A  S  S  T  P  W  F  W  S  I  S  S  N  P  Y  E  N  T  F  C  *  S  D  G  I  * :   Y  D  S  L  L  L  R  S  S  T  E  S  G  A  L  *  C  C  A  Y  H  Q  P  S  S  T  I  T  P  T  F  T  F  S  G  S  K  F  A  F  L  L  G  *  S  D  R  V  L  L  Q  :  *  C  *  S  C  K  R  *  L  F  E  G  K  D  G  *  G  R  V  G  S  N  A  S  D  C  *  L  S  S   : S  *  E  N  D  R  E  G  P  V  *  Y  Y  P  V  H  F  V  L  F  E  G  F  N  V  C  R  S  A   : G  *  Q  G  K  E  T  G  W  L  E  E  M  D  S  Y  C  W  P  A  C  S  *  F  R  F  V  H  T  C  C  I  V  R  W  W  S  N  S  F  L  A  E  C  L  *  E  *  I  S  Y  K  Y  Q  Q  C  Y  R  S  D  R  C  S  T  G  G  S  C  W  W  L  I  G  R  I  S  *  S  I  K  P  S  S  R  R  R  R  R  W  R  G  K  Y  L  Y  Q  P  C  M  K  *  Y  C  R  F  C  N  E  W  Q  L  C  F  A  F  *  F  K  G  R  C  I  W  K  G  Y  T  Y  I  I  C  C  P  C  W  R  P  Y  F  L  Q  F  L  R  *  V  E  E  L  N  *  C  V  S  Y  L  V  *  R  V  E  R  *  W  R  L  K  G  Y  T  V  E  L  E  T  F  E  S  F  G  S  Y  T  C  I  T  Y  A  G  W  Y  S  I  V  I  Q  W  S  E  F  G  F  *  A  *  G  L  T  F  L  G  *  N  F  T  S  I  S  E  E  T  F  *  K  C  R  F  S  A  W  L  V  S  R  V  I  V  L  C  *  F  C  Y  T  Y  L  G  I  L  I  V  L  N  Y  F  F  F  F  A  S  H   </first_frame>
            <second_frame>  S  V  S  V  S  Q  :  G  P  I  I  S  Q  S  P  Q  K  Q  A  N  V  N  A  N  T  N  S  N  A  N  P  T  T  P  V  R  Q  R  S  I  K  Y  R  G  S  S  S  S  G  G  G  G  G  S  G  P  G  A  G  A  F  I  R  T  P  P  P  P  P  P  P  L  P  P  P  F  P  V  M  H  F  P  P  V  L  E  P  P  V  R  G  A  R  P  V  G  G  F  P  S  Q  P  H  G  V  N  D  H  S  S  H  R  N  H  G  R  K  G  N  F  G  G  R  P  R  G  D  G  S  Y  H  N  N  H  G  G  R  R  D  Q  D  R  R  D  V  H  M  G  P  P  F  A  P  P  P  H  A  A  F  M  R  A  P  L  P  G  S  G  P  F  L  P  T  P  M  R  T  P  F  V  N  Q  M  A  Y   : D  M  T  P  F  F  Y  V  P  P  L  S  P  E  P  Y  S  A  V  P  I  I  N  Q  A  P  Q  L  P  Q  H  L  P  L  V  D  P  N  L  P  S  S  L  V  N  Q  I  E  Y  Y  F  S :   D  A  N  L  V  K  D  D  F  L  R  V  K  M  D  E  E  G  W  V  P  M  H  L  I  A  N  F  P  R  :  V  K  K  M  T  E  K  V  Q  S  D  I  I  Q  F  I  L  Y  C  L  R  A  S  T  F  V  E  V  Q  :  D  D  K  V  R  R  R  D  G  W  R  K  W  T  R  T  A  G  Q  L  A  A  D  S  G  L  S  T  P  V  A  S  S  D  G  G  P  T  A  S  L  Q  N  V  S  E  N  E  S  A  T  N  I  S  S  A  T  E  V  T  D  A  Q  L  E  V  A  A  G  G  S  S  D  E  S  A  N  Q  S  N  P  A  Q  E  E  G  G  A  G  V  E  N  I  S  T  N  H  A  *  N  N  T  V  D  F  A  T  S  G  N  S  V  L  H  S  D  L  K  E  G  V  F  G  R  V  I  H  T  S  F  A  A  L  V  G  G  H  T  F  C  S  F  *  G  E  W  K  S  *  T  N  V  *  V  I  W  Y  R  E  W  N  D  S  G  D  *  K  D  I  Q  L  S  L  R  L  S  S  R  L  A  R  I  L  A  S  H  M  Q  A  G  I  P  L  *  F  N  G  V  N  L  D  F  E  P  K  V  *  L  F  W  V  E  T  L  P  P  F  Q  R  K  H  S  E  N  V  D  L  V  L  G  W  Y  P  E  *  L  C  S  A  D  F  V  I  L  I  *  A  Y  *  L  F  *  I  I  F  S  F  L  H  L  I  </second_frame>
            <third_frame>   R  F  L  F  L  R :   V  Q  *  F  L  S  H  L  K  N  R  L  M  L  M  Q  T  Q  I  Q  M  Q  I  L  Q  P  L  L  D  K  D  Q  *  N  T  E  V  V  A  A  V  V  V  V  V  V  V  V  Q  V  L  E  H  L  L  E  L  R  L  H  L  H  L  H  C  L  L  L  F  L  *  C  I  S  H  L  F  L  S  L  L  *  E  V  Q  D  L  L  E  D  F  R  L  S  R  M  E  *  M  I  I  L  P  I  E  I  M  A  G  K  V  T  L  G  A  D  L  V  E  M  G  L  I  I  T  I  M  G  E  G  V  I  K  I  G  E  T  F  I  W  V  L  H  L  L  L  L  L  M  Q  R  L  C  E  L  H  S  L  V  L  V  H  F  F  Q  P  L  *  E  H  L  L  L  I  R  W  H  M  :  I  *  L  P  S  F  T  F  L  H  *  V  R  S  P  I  V  L  C  L  S  S  T  K  L  H  N  Y  P  N  I  Y  L  *  W  I  Q  I  C  L  P  P  W  L  I  R  *  S  I  T  S   : V  M  L  I  L  *  K  M  T  F  *  G  *  R  W  M  R  K  G  G  F  Q  C  I  *  L  L  T  F  L  E :   L  R  K  *  Q  R  R  S  S  L  I  L  S  S  S  F  C  I  V  *  G  L  Q  R  L  *  K  C  R :   M  T  R  *  G  D  G  M  V  G  G  N  G  L  V  L  L  A  S  L  Q  L  I  Q  V  C  P  H  L  L  H  R  Q  M  V  V  Q  Q  L  P  C  R  M  S  L  R  M  N  Q  L  Q  I  S  A  V  L  Q  K  *  P  M  L  N  W  R  *  L  L  V  A  H  R  T  N  Q  L  I  N  Q  T  Q  L  K  K  K  A  A  L  A  W  K  I  S  L  P  T  M  H  E  I  I  L  S  I  L  Q  R  V  A  T  L  F  C  I  L  I  *  R  K  V  Y  L  E  G  L  Y  I  H  H  L  L  P  L  L  E  A  I  L  F  A  V  F  E  V  S  G  R  V  K  L  M  C  K  L  S  G  I  E  S  G  T  I  V  E  I  K  R  I  Y  S  *  A  *  D  F  R  V  V  W  L  V  Y  L  H  H  I  C  R  L  V  F  H  C  D  S  M  E  *  I  W  I  L  S  L  R  F  N  F  F  G  L  K  L  Y  L  H  F  R  G  N  I  L  K  M  *  I  *  C  L  A  G  I  Q  S  D  C  A  L  L  I  L  L  Y  L  S  R  H  I  D  C  F  K  L  F  F  L  F  C  I  S  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31488" stop="31505"/>
                    <exon start="31680" stop="32214"/>
                    <exon start="32288" stop="32441"/>
                    <exon start="32606" stop="32696"/>
                    <exon start="34731" stop="34817"/>
                    <exon start="35400" stop="35696"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1179</number_coding_nucleotides>
                  <number_encoded_amino_acids>393</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVSVSQGPIISQSPQKQANVNANTNSNANPTTPVRQRSIKYRGSSSSGGGGGSGPGAGAFIRTPPPPPPPLPPPFPVMHFPPVLEPPVRGARPVGGFPSQPHGVNDHSSHRNHGRKGNFGGRPRGDGSYHNNHGGRRDQDRRDVHMGPPFAPPPHAAFMRAPLPGSGPFLPTPMRTPFVNQMAYDMTPFFYVPPLSPEPYSAVPIINQAPQLPQHLPLVDPNLPSSLVNQIEYYFSDANLVKDDFLRVKMDEEGWVPMHLIANFPRVKKMTEKVQSDIIQFILYCLRASTFVEVQDDKVRRRDGWRKWTRTAGQLAADSGLSTPVASSDGGPTASLQNVSENESATNISSATEVTDAQLEVAAGGSSDESANQSNPAQEEGGAGVENISTNHA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="43030" PGL_stop="43727"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43030" e_stop="43727"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43030" e_stop="43727" e_length="698"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43030" stop="43727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329503" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATACGACATAGGAGCTGGAGAAGCAAGCCCTTCATTGGCACTTAATCCAGGATTGGTCTACGAGACTAACACCGCAGACTACTTGCAGTACCTATGCTCAGTTGGCTACGATAAATCAAAGATAAAACTCATTTCAAATACAGTTCCTGATGATTTTTCATGTCCCACCAACTCAAGTTCTGAATCCGTCTCACAAATGAACTACCCTTCCATTGCTGTTTCAAATATCAAAGAAAATGAAATCAAGAAAGTAACAAGAACTGTAACTAACGTAGGACAAGACGACGCAACATACACAGCAAGTATAAAGGCACCAGTTGGTTTGGAAGTCCAAGTGACCCCGAATAAATTGGTATTTACAAATAATAGCAAGAAGTTGAGCTATGAAATGTCTTTCAAAGCTTCATCTAAACCAAAGGAAGACTTGTTTGGATCAATTACATGGACAAATGGTAAATACAAAGTCCGAAGTCCATTCGTTATATCTACTAATTCACAAGGTGAACACTCCAAAACAGCAGATCGCAGATCAAACTAGTCTAGCAAGTTTGTATATACTGTAATAGTCCATGTCCATGTACACAACTATGTTACAACTACATCATATACATGCTTACATGAAAAAAAGAGCGAAATAAAGATCAGATGACAGACTCGTTCACAGAGTGAGAATATAATACTACCTCCGATTCAATTT</gDNA_template>
            <first_frame> H  T  T  *  E  L  E  K  Q  A  L  H  W  H  L  I  Q  D  W  S  T  R  L  T  P  Q  T  T  C  S  T  Y  A  Q  L  A  T  I  N  Q  R  *  N  S  F  Q  I  Q  F  L  M  I  F  H  V  P  P  T  Q  V  L  N  P  S  H  K  *  T  T  L  P  L  L  F  Q  I  S  K  K  M  K  S  R  K  *  Q  E  L  *  L  T  *  D  K  T  T  Q  H  T  Q  Q  V  *  R  H  Q  L  V  W  K  S  K  *  P  R  I  N  W  Y  L  Q  I  I  A  R  S  *  A  M  K  C  L  S  K  L  H  L  N  Q  R  K  T  C  L  D  Q  L  H  G  Q  M  V  N  T  K  S  E  V  H  S  L  Y  L  L  I  H  K  V  N  T  P  K  Q  Q  I  A  D  Q  T  S  L  A  S  L  Y  I  L  *  *  S  M  S  M  Y  T  T  M  L  Q  L  H  H  I  H  A  Y  M  K  K  R  A  K  *  R  S  D  D  R  L  V  H  R  V  R  I  *  Y  Y  L  R  F  N   </first_frame>
            <second_frame>  I  R  H  R  S  W  R  S  K  P  F  I  G  T  *  S  R  I  G  L  R  D  *  H  R  R  L  L  A  V  P  M  L  S  W  L  R  *  I  K  D  K  T  H  F  K  Y  S  S  *  *  F  F  M  S  H  Q  L  K  F  *  I  R  L  T  N  E  L  P  F  H  C  C  F  K  Y  Q  R  K  *  N  Q  E  S  N  K  N  C  N  *  R  R  T  R  R  R  N  I  H  S  K  Y  K  G  T  S  W  F  G  S  P  S  D  P  E  *  I  G  I  Y  K  *  *  Q  E  V  E  L  *  N  V  F  Q  S  F  I  *  T  K  G  R  L  V  W  I  N  Y  M  D  K  W  *  I  Q  S  P  K  S  I  R  Y  I  Y  *  F  T  R  *  T  L  Q  N  S  R  S  Q  I  K  L  V  *  Q  V  C  I  Y  C  N  S  P  C  P  C  T  Q  L  C  Y  N  Y  I  I  Y  M  L  T  *  K  K  E  R  N  K  D  Q  M  T  D  S  F  T  E  *  E  Y  N  T  T  S  D  S  I  </second_frame>
            <third_frame>   Y  D  I  G  A  G  E  A  S  P  S  L  A  L  N  P  G  L  V  Y  E  T  N  T  A  D  Y  L  Q  Y  L  C  S  V  G  Y  D  K  S  K  I  K  L  I  S  N  T  V  P  D  D  F  S  C  P  T  N  S  S  S  E  S  V  S  Q  M  N  Y  P  S  I  A  V  S  N  I  K  E  N  E  I  K  K  V  T  R  T  V  T  N  V  G  Q  D  D  A  T  Y  T  A  S  I  K  A  P  V  G  L  E  V  Q  V  T  P  N  K  L  V  F  T  N  N  S  K  K  L  S  Y  E  M  S  F  K  A  S  S  K  P  K  E  D  L  F  G  S  I  T  W  T  N  G  K  Y  K  V  R  S  P  F  V  I  S  T  N  S  Q  G  E  H  S  K  T  A  D  R  R  S  N  *  S  S  K  F  V  Y  T  V  I  V  H  V  H  V  H  N  Y  V  T  T  T  S  Y  T  C  L  H  E  K  K  S  E  I  K  I  R  *  Q  T  R  S  Q  S  E  N  I  I  L  P  P  I  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43032" stop="43568"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YDIGAGEASPSLALNPGLVYETNTADYLQYLCSVGYDKSKIKLISNTVPDDFSCPTNSSSESVSQMNYPSIAVSNIKENEIKKVTRTVTNVGQDDATYTASIKAPVGLEVQVTPNKLVFTNNSKKLSYEMSFKASSKPKEDLFGSITWTNGKYKVRSPFVISTNSQGEHSKTADRRSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="46856" PGL_stop="46384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46856" e_stop="46777"/>
            <exon e_start="46699" e_stop="46384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="46856" e_stop="46777" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="46776" i_stop="46700" i_length="77"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46699" e_stop="46384" e_length="316"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46856" stop="46777"/>
              <exon start="46699" stop="46384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330536" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAGTTACCTAATTCAAGATTGGTATATGTAGATACATACAATGTGCTACTTGATGTCATCGACAACCCTCAACGATATG : GATTCAAGATTACAGACAAGGGATGCTGCGGCACGGGGAAAATAGAAGTTGCAGAGTTATGCACATATACATGTTCCAGTGATACTGATTATATTTTTTGGGATAGTTTTCATCTTACAGAAAAAGCATATAGACTTTTAGTTCATCAAATTCTTGTCCAACATTTAAATAGCTTCTTCTGATATATATTCCACATGCATAAGTCCAACAATATGTATTTTTTTTAAAGTGTACTCAAAGAGAAACAGAACATTAGTCATTCTATGTACTATCCTCATTGTTTGGTTTGCAAATAATTATACAAGAATTGTATTAA</gDNA_template>
            <first_frame> Q  V  T  *  F  K  I  G  I  C  R  Y  I  Q  C  A  T  *  C  H  R  Q  P  S  T  I  W :   I  Q  D  Y  R  Q  G  M  L  R  H  G  E  N  R  S  C  R  V  M  H  I  Y  M  F  Q  *  Y  *  L  Y  F  L  G  *  F  S  S  Y  R  K  S  I  *  T  F  S  S  S  N  S  C  P  T  F  K  *  L  L  L  I  Y  I  P  H  A  *  V  Q  Q  Y  V  F  F  L  K  C  T  Q  R  E  T  E  H  *  S  F  Y  V  L  S  S  L  F  G  L  Q  I  I  I  Q  E  L  Y  * </first_frame>
            <second_frame>  K  L  P  N  S  R  L  V  Y  V  D  T  Y  N  V  L  L  D  V  I  D  N  P  Q  R  Y   : G  F  K  I  T  D  K  G  C  C  G  T  G  K  I  E  V  A  E  L  C  T  Y  T  C  S  S  D  T  D  Y  I  F  W  D  S  F  H  L  T  E  K  A  Y  R  L  L  V  H  Q  I  L  V  Q  H  L  N  S  F  F  *  Y  I  F  H  M  H  K  S  N  N  M  Y  F  F  *  S  V  L  K  E  K  Q  N  I  S  H  S  M  Y  Y  P  H  C  L  V  C  K  *  L  Y  K  N  C  I   </second_frame>
            <third_frame>   S  Y  L  I  Q  D  W  Y  M  *  I  H  T  M  C  Y  L  M  S  S  T  T  L  N  D  M  :  D  S  R  L  Q  T  R  D  A  A  A  R  G  K  *  K  L  Q  S  Y  A  H  I  H  V  P  V  I  L  I  I  F  F  G  I  V  F  I  L  Q  K  K  H  I  D  F  *  F  I  K  F  L  S  N  I  *  I  A  S  S  D  I  Y  S  T  C  I  S  P  T  I  C  I  F  F  K  V  Y  S  K  R  N  R  T  L  V  I  L  C  T  I  L  I  V  W  F  A  N  N  Y  T  R  I  V  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46855" stop="46777"/>
                    <exon start="46699" stop="46518"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLPNSRLVYVDTYNVLLDVIDNPQRYGFKITDKGCCGTGKIEVAELCTYTCSSDTDYIFWDSFHLTEKAYRLLVHQILVQHLNSFF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="48496" PGL_stop="47248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48496" e_stop="48162"/>
            <exon e_start="47568" e_stop="47438"/>
            <exon e_start="47349" e_stop="47248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48496" e_stop="48162" e_length="335"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.984">
            <gDNA_intron_boundary i_start="48161" i_stop="47569" i_length="593"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47568" e_stop="47438" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.988">
            <gDNA_intron_boundary i_start="47437" i_stop="47350" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47349" e_stop="47248" e_length="102"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48496" stop="48162"/>
              <exon start="47568" stop="47438"/>
              <exon start="47349" stop="47248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345435" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGCATGATTGAGTTTTTGAAGTTAAATAGCATTAGTTCTTGTGTGTTCTTTTCCACCAAAGCTAAAAAGTTTACACTTTTATCAATGAAGTTCTACTTTTACAAGATTTGTTCTTTTTTTGTGTTTTGTATAAGTGTTTGTTATGCAATAAGTCTACCTCCTAATAAGTCTATTCCAGCAGTGTTTGTTTTTGGAGACTCTATTGTTGATACTGGTAATAATAATGGCCTTAAAACTATAGCTAAGGTTAATTATCCTCCTTATGGTAAAGATTTTATGGGAGGAATACCAACTGGAAGGTTTTCTAATGGCAAAGTCCCTTCAGATTTCCTTG : TGGAAGAATTGGGAATAAAAGATCTTTTACCAGCATATCTTGATCCAACTTTACAATCCGAAGACCTTATCACAGGAGTTAATTTTGCTTCAGGAGGTGCAGGATATGATCCTCTAACATCCGAACTCGCT : AAAGTCATCTCATTAGATGGCCAAGTGATACTATTCAAAGAGTACATAGTAAAGCTCACAGAGTTAGTTGGAGAAGATAGAAAGAATGAAATCTTGGCAAAT</gDNA_template>
            <first_frame> Q  H  D  *  V  F  E  V  K  *  H  *  F  L  C  V  L  F  H  Q  S  *  K  V  Y  T  F  I  N  E  V  L  L  L  Q  D  L  F  F  F  C  V  L  Y  K  C  L  L  C  N  K  S  T  S  *  *  V  Y  S  S  S  V  C  F  W  R  L  Y  C  *  Y  W  *  *  *  W  P  *  N  Y  S  *  G  *  L  S  S  L  W  *  R  F  Y  G  R  N  T  N  W  K  V  F  *  W  Q  S  P  F  R  F  P  C :   G  R  I  G  N  K  R  S  F  T  S  I  S  *  S  N  F  T  I  R  R  P  Y  H  R  S  *  F  C  F  R  R  C  R  I  *  S  S  N  I  R  T  R   : *  S  H  L  I  R  W  P  S  D  T  I  Q  R  V  H  S  K  A  H  R  V  S  W  R  R  *  K  E  *  N  L  G  K  </first_frame>
            <second_frame>  S  M  I  E  F  L  K  L  N  S  I  S  S  C  V  F  F  S  T  K  A  K  K  F  T  L  L  S  M  K  F  Y  F  Y  K  I  C  S  F  F  V  F  C  I  S  V  C  Y  A  I  S  L  P  P  N  K  S  I  P  A  V  F  V  F  G  D  S  I  V  D  T  G  N  N  N  G  L  K  T  I  A  K  V  N  Y  P  P  Y  G  K  D  F  M  G  G  I  P  T  G  R  F  S  N  G  K  V  P  S  D  F  L   : V  E  E  L  G  I  K  D  L  L  P  A  Y  L  D  P  T  L  Q  S  E  D  L  I  T  G  V  N  F  A  S  G  G  A  G  Y  D  P  L  T  S  E  L  A  :  K  V  I  S  L  D  G  Q  V  I  L  F  K  E  Y  I  V  K  L  T  E  L  V  G  E  D  R  K  N  E  I  L  A  N </second_frame>
            <third_frame>   A  *  L  S  F  *  S  *  I  A  L  V  L  V  C  S  F  P  P  K  L  K  S  L  H  F  Y  Q  *  S  S  T  F  T  R  F  V  L  F  L  C  F  V  *  V  F  V  M  Q  *  V  Y  L  L  I  S  L  F  Q  Q  C  L  F  L  E  T  L  L  L  I  L  V  I  I  M  A  L  K  L  *  L  R  L  I  I  L  L  M  V  K  I  L  W  E  E  Y  Q  L  E  G  F  L  M  A  K  S  L  Q  I  S  L  :  W  K  N  W  E  *  K  I  F  Y  Q  H  I  L  I  Q  L  Y  N  P  K  T  L  S  Q  E  L  I  L  L  Q  E  V  Q  D  M  I  L  *  H  P  N  S  L :   K  S  S  H  *  M  A  K  *  Y  Y  S  K  S  T  *  *  S  S  Q  S  *  L  E  K  I  E  R  M  K  S  W  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48495" stop="48162"/>
                    <exon start="47568" stop="47438"/>
                    <exon start="47349" stop="47248"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMIEFLKLNSISSCVFFSTKAKKFTLLSMKFYFYKICSFFVFCISVCYAISLPPNKSIPAVFVFGDSIVDTGNNNGLKTIAKVNYPPYGKDFMGGIPTGRFSNGKVPSDFLVEELGIKDLLPAYLDPTLQSEDLITGVNFASGGAGYDPLTSELAKVISLDGQVILFKEYIVKLTELVGEDRKNEILAN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="51770" PGL_stop="50779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51770" e_stop="51693"/>
            <exon e_start="51258" e_stop="51003"/>
            <exon e_start="50905" e_stop="50779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.967" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51770" e_stop="51693" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="51692" i_stop="51259" i_length="434"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51258" e_stop="51003" e_length="256"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.967">
            <gDNA_intron_boundary i_start="51002" i_stop="50906" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="50905" e_stop="50779" e_length="127"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51770" stop="51693"/>
              <exon start="51258" stop="51003"/>
              <exon start="50905" stop="50779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTTCCAAGGAAAATACAATACAATGTTGACTCATATACAAATCTTATGGTAGATGGAGCTTCCAATTTTATCAAT : GATTTGTACAATATGGGAGCAAGAAGAATTTGGATATTTGGGCTTCCACCAATAGGGTGTTTGCCATCGCAAATACTGCGAGGTGGAGGTCCATCTAAAATTTGTGTCAACGAATACAATCAAGCTGCTCGAATAGCAAATACCAAATTATCAAATAAAATTCATTCATTAAACAAAAAATTGCCTCAAATCGAGCTTCTTTATATCAATATTTACGATCCTCTACTCGATATTATCGCCAAACACAATAAATACG : GTTTTGAAGATGCATTGAGTGCGTGTTGCCAAGGAAGGAATGAGTATTTGTTATGTGACAACGTTACAAAAATATGCGAAAATGATGCAAATTATTTATTTTGGGATAGTTATCATCTCACTGAGAA</gDNA_template>
            <first_frame> K  F  P  R  K  I  Q  Y  N  V  D  S  Y  T  N  L  M  V  D  G  A  S  N  F  I  N  :  D  L  Y  N  M  G  A  R  R  I  W  I  F  G  L  P  P  I  G  C  L  P  S  Q  I  L  R  G  G  G  P  S  K  I  C  V  N  E  Y  N  Q  A  A  R  I  A  N  T  K  L  S  N  K  I  H  S  L  N  K  K  L  P  Q  I  E  L  L  Y  I  N  I  Y  D  P  L  L  D  I  I  A  K  H  N  K  Y   : G  F  E  D  A  L  S  A  C  C  Q  G  R  N  E  Y  L  L  C  D  N  V  T  K  I  C  E  N  D  A  N  Y  L  F  W  D  S  Y  H  L  T  E   </first_frame>
            <second_frame>  N  F  Q  G  K  Y  N  T  M  L  T  H  I  Q  I  L  W  *  M  E  L  P  I  L  S  M :   I  C  T  I  W  E  Q  E  E  F  G  Y  L  G  F  H  Q  *  G  V  C  H  R  K  Y  C  E  V  E  V  H  L  K  F  V  S  T  N  T  I  K  L  L  E  *  Q  I  P  N  Y  Q  I  K  F  I  H  *  T  K  N  C  L  K  S  S  F  F  I  S  I  F  T  I  L  Y  S  I  L  S  P  N  T  I  N  T  :  V  L  K  M  H  *  V  R  V  A  K  E  G  M  S  I  C  Y  V  T  T  L  Q  K  Y  A  K  M  M  Q  I  I  Y  F  G  I  V  I  I  S  L  R  </second_frame>
            <third_frame>   I  S  K  E  N  T  I  Q  C  *  L  I  Y  K  S  Y  G  R  W  S  F  Q  F  Y  Q   : *  F  V  Q  Y  G  S  K  K  N  L  D  I  W  A  S  T  N  R  V  F  A  I  A  N  T  A  R  W  R  S  I  *  N  L  C  Q  R  I  Q  S  S  C  S  N  S  K  Y  Q  I  I  K  *  N  S  F  I  K  Q  K  I  A  S  N  R  A  S  L  Y  Q  Y  L  R  S  S  T  R  Y  Y  R  Q  T  Q  *  I  R :   F  *  R  C  I  E  C  V  L  P  R  K  E  *  V  F  V  M  *  Q  R  Y  K  N  M  R  K  *  C  K  L  F  I  L  G  *  L  S  S  H  *  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51770" stop="51693"/>
                    <exon start="51258" stop="51003"/>
                    <exon start="50905" stop="50781"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFPRKIQYNVDSYTNLMVDGASNFINDLYNMGARRIWIFGLPPIGCLPSQILRGGGPSKICVNEYNQAARIANTKLSNKIHSLNKKLPQIELLYINIYDPLLDIIAKHNKYGFEDALSACCQGRNEYLLCDNVTKICENDANYLFWDSYHLTE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="52599" PGL_stop="51839"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52599" e_stop="52319"/>
            <exon e_start="52221" e_stop="52091"/>
            <exon e_start="51929" e_stop="51839"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52599" e_stop="52319" e_length="281"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.986">
            <gDNA_intron_boundary i_start="52318" i_stop="52222" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52221" e_stop="52091" e_length="131"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="52090" i_stop="51930" i_length="161"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51929" e_stop="51839" e_length="91"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52599" stop="52319"/>
              <exon start="52221" stop="52091"/>
              <exon start="51929" stop="51839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332339" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTATACATTTTTTTTACTGCATAAAATAGTAATAATGGCTTTATTATGTGCTGTTTTTATAATGTTATTTATTTCATGTGAAGCAAAGTTGCAATTACGTAAGGACATAAATATAACGGCTCTTTTTGCCTTTGGAGATTCAATTGTAGATCAAGGAAATAATAACAATTTAATTACTCATGCAAAGTGTAATTTTTTACCTTATGGAAAAGATTTCATGGGTGGTAATAATCCAACTGGAAGATTTAGCAATGCCAGGACACCAGCAGACATGTTAG : TTGAAGATTTTGGGATTAAGAAGCTAATGCCAGCTTATCTAGATTCAAATTTAAAAGTTGAAGATTTAAAAACTGGAGTAAGTTTTGCTTCAGGAGCTTCTGGATTTGACCTTTTAACTCCTGTTGTCGCG : TCAGCTTTACCACTATCAGTACAATTAGCACTTTTTCAACAATATATTTGGAAGATGAATGGATTTATTGGTGAAGAAGCAACAAAGAATA</gDNA_template>
            <first_frame> N  L  Y  I  F  F  T  A  *  N  S  N  N  G  F  I  M  C  C  F  Y  N  V  I  Y  F  M  *  S  K  V  A  I  T  *  G  H  K  Y  N  G  S  F  C  L  W  R  F  N  C  R  S  R  K  *  *  Q  F  N  Y  S  C  K  V  *  F  F  T  L  W  K  R  F  H  G  W  *  *  S  N  W  K  I  *  Q  C  Q  D  T  S  R  H  V  S :   *  R  F  W  D  *  E  A  N  A  S  L  S  R  F  K  F  K  S  *  R  F  K  N  W  S  K  F  C  F  R  S  F  W  I  *  P  F  N  S  C  C  R   : V  S  F  T  T  I  S  T  I  S  T  F  S  T  I  Y  L  E  D  E  W  I  Y  W  *  R  S  N  K  E   </first_frame>
            <second_frame>  I  Y  T  F  F  L  L  H  K  I  V  I  M  A  L  L  C  A  V  F  I  M  L  F  I  S  C  E  A  K  L  Q  L  R  K  D  I  N  I  T  A  L  F  A  F  G  D  S  I  V  D  Q  G  N  N  N  N  L  I  T  H  A  K  C  N  F  L  P  Y  G  K  D  F  M  G  G  N  N  P  T  G  R  F  S  N  A  R  T  P  A  D  M  L   : V  E  D  F  G  I  K  K  L  M  P  A  Y  L  D  S  N  L  K  V  E  D  L  K  T  G  V  S  F  A  S  G  A  S  G  F  D  L  L  T  P  V  V  A  :  S  A  L  P  L  S  V  Q  L  A  L  F  Q  Q  Y  I  W  K  M  N  G  F  I  G  E  E  A  T  K  N  </second_frame>
            <third_frame>   S  I  H  F  F  Y  C  I  K  *  *  *  W  L  Y  Y  V  L  F  L  *  C  Y  L  F  H  V  K  Q  S  C  N  Y  V  R  T  *  I  *  R  L  F  L  P  L  E  I  Q  L  *  I  K  E  I  I  T  I  *  L  L  M  Q  S  V  I  F  Y  L  M  E  K  I  S  W  V  V  I  I  Q  L  E  D  L  A  M  P  G  H  Q  Q  T  C  *  :  L  K  I  L  G  L  R  S  *  C  Q  L  I  *  I  Q  I  *  K  L  K  I  *  K  L  E  *  V  L  L  Q  E  L  L  D  L  T  F  *  L  L  L  S  R :   Q  L  Y  H  Y  Q  Y  N  *  H  F  F  N  N  I  F  G  R  *  M  D  L  L  V  K  K  Q  Q  R  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52598" stop="52319"/>
                    <exon start="52221" stop="52091"/>
                    <exon start="51929" stop="51840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYTFFLLHKIVIMALLCAVFIMLFISCEAKLQLRKDINITALFAFGDSIVDQGNNNNLITHAKCNFLPYGKDFMGGNNPTGRFSNARTPADMLVEDFGIKKLMPAYLDSNLKVEDLKTGVSFASGASGFDLLTPVVASALPLSVQLALFQQYIWKMNGFIGEEATKN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="55219" PGL_stop="52799"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55219" e_stop="55186"/>
            <exon e_start="55020" e_stop="54765"/>
            <exon e_start="54501" e_stop="54155"/>
            <exon e_start="52832" e_stop="52799"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.265" e_score="0.994"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55219" e_stop="55186" e_length="34"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.998">
            <gDNA_intron_boundary i_start="55185" i_stop="55021" i_length="165"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55020" e_stop="54765" e_length="256"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="1.000">
            <gDNA_intron_boundary i_start="54764" i_stop="54502" i_length="263"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="54501" e_stop="54155" e_length="347"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.265">
            <gDNA_intron_boundary i_start="54154" i_stop="52833" i_length="1322"/>
          </intron>
          <exon e_serial="4" e_score="0.500">
            <gDNA_exon_boundary e_start="52832" e_stop="52799" e_length="34"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55219" stop="55186"/>
              <exon start="55020" stop="54765"/>
              <exon start="54501" stop="54155"/>
              <exon start="52832" stop="52799"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327560" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCATGGTGTCCAAAGCTACTGAATTTTTCCAA : GAATTGTACAACTTGGGAGCAAGAAAAATTGGGATATTTGGAATTCCTCCCATAGGATGTTTGCCATCACAAAGAACATTAGCTGGTGGGCCAAATAGAGTATGTGCCAAGGAATACAATGAAGCAGCCCAATTGGCTAACACAAAATTCTCAATTGCCATTGATTCACTATCAAAAAAGTTGGCCCAATCCAAACTTGTGTTGATAGATATCTATAATCCTTTTCTTGATATCATTGTCAACCCTCAAAAATATG : GATTAGAAGAAGTAGAGAAAGGGTGTTGTGGCACAGGAAATATTGAGGTGACAATATTATGTAATAAATTCAGTGGAACATGTGAAGATGATACAAAATATTTATTTTGGGATAGTTTTCATCCAACTGAGAAAGGTTATAGGATTCTTGTTGATCAAATATTGAAAAAATATGTCAATAGATTTTTGTAGATGATGAGCTCAATCAAGATCAAGATTATGTATCACCAAATTTGTATAGTTTGGATCAAAGGTCCAAACTTTTTTTTGTTCAATTAATAGTTCATTTATACACATCCAAGTGTTTATGTTGGAATCTAATAAAAAAAATATTGTTCATGTCAAATG : ATATAAAATAAATACAACAATCGATACTATTTTT</gDNA_template>
            <first_frame> S  H  G  V  Q  S  Y  *  I  F  P   : R  I  V  Q  L  G  S  K  K  N  W  D  I  W  N  S  S  H  R  M  F  A  I  T  K  N  I  S  W  W  A  K  *  S  M  C  Q  G  I  Q  *  S  S  P  I  G  *  H  K  I  L  N  C  H  *  F  T  I  K  K  V  G  P  I  Q  T  C  V  D  R  Y  L  *  S  F  S  *  Y  H  C  Q  P  S  K  I  W :   I  R  R  S  R  E  R  V  L  W  H  R  K  Y  *  G  D  N  I  M  *  *  I  Q  W  N  M  *  R  *  Y  K  I  F  I  L  G  *  F  S  S  N  *  E  R  L  *  D  S  C  *  S  N  I  E  K  I  C  Q  *  I  F  V  D  D  E  L  N  Q  D  Q  D  Y  V  S  P  N  L  Y  S  L  D  Q  R  S  K  L  F  F  V  Q  L  I  V  H  L  Y  T  S  K  C  L  C  W  N  L  I  K  K  I  L  F  M  S  N   : D  I  K  *  I  Q  Q  S  I  L  F   </first_frame>
            <second_frame>  L  M  V  S  K  A  T  E  F  F  Q  :  E  L  Y  N  L  G  A  R  K  I  G  I  F  G  I  P  P  I  G  C  L  P  S  Q  R  T  L  A  G  G  P  N  R  V  C  A  K  E  Y  N  E  A  A  Q  L  A  N  T  K  F  S  I  A  I  D  S  L  S  K  K  L  A  Q  S  K  L  V  L  I  D  I  Y  N  P  F  L  D  I  I  V  N  P  Q  K  Y   : G  L  E  E  V  E  K  G  C  C  G  T  G  N  I  E  V  T  I  L  C  N  K  F  S  G  T  C  E  D  D  T  K  Y  L  F  W  D  S  F  H  P  T  E  K  G  Y  R  I  L  V  D  Q  I  L  K  K  Y  V  N  R  F  L  *  M  M  S  S  I  K  I  K  I  M  Y  H  Q  I  C  I  V  W  I  K  G  P  N  F  F  L  F  N  *  *  F  I  Y  T  H  P  S  V  Y  V  G  I  *  *  K  K  Y  C  S  C  Q  M  :  I  *  N  K  Y  N  N  R  Y  Y  F  </second_frame>
            <third_frame>   S  W  C  P  K  L  L  N  F  S  K :   N  C  T  T  W  E  Q  E  K  L  G  Y  L  E  F  L  P  *  D  V  C  H  H  K  E  H  *  L  V  G  Q  I  E  Y  V  P  R  N  T  M  K  Q  P  N  W  L  T  Q  N  S  Q  L  P  L  I  H  Y  Q  K  S  W  P  N  P  N  L  C  *  *  I  S  I  I  L  F  L  I  S  L  S  T  L  K  N  M  :  D  *  K  K  *  R  K  G  V  V  A  Q  E  I  L  R  *  Q  Y  Y  V  I  N  S  V  E  H  V  K  M  I  Q  N  I  Y  F  G  I  V  F  I  Q  L  R  K  V  I  G  F  L  L  I  K  Y  *  K  N  M  S  I  D  F  C  R  *  *  A  Q  S  R  S  R  L  C  I  T  K  F  V  *  F  G  S  K  V  Q  T  F  F  C  S  I  N  S  S  F  I  H  I  Q  V  F  M  L  E  S  N  K  K  N  I  V  H  V  K  * :   Y  K  I  N  T  T  I  D  T  I  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55218" stop="55186"/>
                    <exon start="55020" stop="54765"/>
                    <exon start="54501" stop="54311"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>477</number_coding_nucleotides>
                  <number_encoded_amino_acids>159</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LMVSKATEFFQELYNLGARKIGIFGIPPIGCLPSQRTLAGGPNRVCAKEYNEAAQLANTKFSIAIDSLSKKLAQSKLVLIDIYNPFLDIIVNPQKYGLEEVEKGCCGTGNIEVTILCNKFSGTCEDDTKYLFWDSFHPTEKGYRILVDQILKKYVNRFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="72698" PGL_stop="64384"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72698" e_stop="72123"/>
            <exon e_start="71020" e_stop="70934"/>
            <exon e_start="70439" e_stop="70308"/>
            <exon e_start="68580" e_stop="68449"/>
            <exon e_start="66574" e_stop="66509"/>
            <exon e_start="66168" e_stop="66058"/>
            <exon e_start="65777" e_stop="65685"/>
            <exon e_start="65038" e_stop="65005"/>
            <exon e_start="64904" e_stop="64837"/>
            <exon e_start="64734" e_stop="64384"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.573" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72698" e_stop="72123" e_length="576"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71020" e_stop="70934" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70439" e_stop="70308" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68580" e_stop="68449" e_length="132"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="68448" i_stop="66575" i_length="1874"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="66574" e_stop="66509" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.573">
            <gDNA_intron_boundary i_start="66508" i_stop="66169" i_length="340"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="66168" e_stop="66058" e_length="111"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.991">
            <gDNA_intron_boundary i_start="66057" i_stop="65778" i_length="280"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="65777" e_stop="65685" e_length="93"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="65038" e_stop="65005" e_length="34"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.840">
            <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="64904" e_stop="64837" e_length="68"/>
          </exon>
          <intron i_serial="9" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="64734" e_stop="64384" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72698" stop="72381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346630" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72461" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68449"/>
              <exon start="66574" stop="66509"/>
              <exon start="66168" stop="66058"/>
              <exon start="65777" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64384"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318709" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGAATCCCACGGAGCTTATCAAAATCCAGTTCATTCTCAGCCTCAACAACCTTATTATCCTCCTTACGATCAACCCCAGGCTGCTCCTAGTTACAATCATAGTACCACTCCGAATTCTTCGTATCCTTCAGTTTATTCAACTCCAAATTATGATAATACTGGGAAGTTTGATCAAAGTGGACAGTATTTTGATGAACCTGTGGATAAGTATGGGAATTATGGTTCGGGGAGAGGTGAATTTGGGCAAGATACTTATGGGAAACGAGCTGAAAGTGGATATGGTAATGATGGTTATGGCGATGGGGTGTTTGCTTATCAGGGTAGTAAAGTAGAGCCTTATGGGGCACGAGGGACTGGTTCAAAGTCTTCGACTTGGTCGTCTAGTTTTGATGATTTTGGGAGGCCAATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG : ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG : GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG : TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGG : GTTCCTGATGAAGCAGTTTCCAAGTGCACAGCTTGTGGATCAGCCTTCAATGCTTTTGTGCGCAGG : CATCACTGTCGGAATTGTGGAGATATTTTCTGTGACAAATGCACTCAGGGAAGAACTGCACTGACAGCTGATGAGAATGCACCAGTTGTTAGAGTTTGTGACCGATGTACG : GCTGAGGTTTCTCGTCGGCTAAGCAGCGCGAAGGAAACTGTCAATAGATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG : GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG : GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG : GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTGATTTGTATTAGCAGGAAGAAATCTAACACTTTTTTTTTTCTTTACATGGAGAAAATATAAGTGAATTTGATTCCAGTAACTCAAGTTTAAATCAATTTGATTTCTTAAA</gDNA_template>
            <first_frame> F  E  S  H  G  A  Y  Q  N  P  V  H  S  Q  P  Q  Q  P  Y  Y  P  P  Y  D  Q  P  Q  A  A  P  S  Y  N  H  S  T  T  P  N  S  S  Y  P  S  V  Y  S  T  P  N  Y  D  N  T  G  K  F  D  Q  S  G  Q  Y  F  D  E  P  V  D  K  Y  G  N  Y  G  S  G  R  G  E  F  G  Q  D  T  Y  G  K  R  A  E  S  G  Y  G  N  D  G  Y  G  D  G  V  F  A  Y  Q  G  S  K  V  E  P  Y  G  A  R  G  T  G  S  K  S  S  T  W  S  S  S  F  D  D  F  G  R  P  I  G  Y  N  S  P  K  E  R  S  S  A  P  T  A  K  I  V  K  A  I  P  K  V  D  T  Q  Q  D  A  K  S  G  V  Q  K  F  R  V  K  L  L  A  E  S  G  G  Q  S  T  Q  D  V  L  C  Q  :  I  G  L  D  G  I  R  M  L  D  P  S  T  S  R  M  L  R  I  Y  P  L  D  T  V  T  R  L  E  :  A  T  D  S  S  T  F  A  F  W  S  K  S  A  V  D  I  E  P  R  R  I  R  L  Q  S  N  S  Y  T  T  S  S  L  L  D  T  V  T  A  A  V  V  Q  :  F  K  E  M  G  G  R  I  M  S  S  E  S  P  K  V  A  E  Q  P  T  E  K  K  K  G  L  T  D  W  I  N  I  V  K  T  V  N  E  E  K  D  H  W  :  V  P  D  E  A  V  S  K  C  T  A  C  G  S  A  F  N  A  F  V  R  R  :  H  H  C  R  N  C  G  D  I  F  C  D  K  C  T  Q  G  R  T  A  L  T  A  D  E  N  A  P  V  V  R  V  C  D  R  C  T  :  A  E  V  S  R  R  L  S  S  A  K  E  T  V  N  R  S  T  G  L  Q  S  H  E  D  L  A  K  K  L  Q  :  E  E  M  E  R  N  R  K  G  S  S   : G  S  R  Q  D  R  S  G  R  M  K  E  V  A  C  P  T  C  T  V  H  L  Q  :  V  Q  V  P  S  S  G  S  E  T  I  E  C  G  V  C  Q  N  P  F  L  V  S  S  H  *  F  *  C  F  P  S  M  E  G  K  T  A  N  S  F  L  V  F  V  C  S  R  T  L  F  R  A  S  V  N  I  *  T  V  C  D  A  P  L  V  G  C  L  I  L  V  S  W  Q  G  N  L  L  I  *  F  V  L  A  G  R  N  L  T  L  F  F  F  F  T  W  R  K  Y  K  *  I  *  F  Q  *  L  K  F  K  S  I  *  F  L  K </first_frame>
            <second_frame>  L  N  P  T  E  L  I  K  I  Q  F  I  L  S  L  N  N  L  I  I  L  L  T  I  N  P  R  L  L  L  V  T  I  I  V  P  L  R  I  L  R  I  L  Q  F  I  Q  L  Q  I  M  I  I  L  G  S  L  I  K  V  D  S  I  L  M  N  L  W  I  S  M  G  I  M  V  R  G  E  V  N  L  G  K  I  L  M  G  N  E  L  K  V  D  M  V  M  M  V  M  A  M  G  C  L  L  I  R  V  V  K  *  S  L  M  G  H  E  G  L  V  Q  S  L  R  L  G  R  L  V  L  M  I  L  G  G  Q  L  G  I  I  L  R  K  N  V  H  Q  L  Q  L  Q  R  S  S  R  Q  F  P  R  L  I  R  S  R  M  R  K  V  V  F  R  S  L  G  *  S  Y  *  L  K  V  V  D  R  V  P  R  M  F  F  A  R :   L  A  W  M  E  S  A  C  W  T  Q  A  L  A  G  C  *  E  F  I  L  L  T  R  *  L  D  L  R :   R  R  I  H  L  P  L  P  S  G  Q  K  V  Q  W  I  *  N  Q  G  V  S  D  C  S  R  T  V  T  Q  P  V  P  C  *  I  Q  S  R  L  R  L  Y  S :   S  R  R  W  V  E  E  *  C  L  L  N  L  Q  R  W  Q  N  S  L  L  R  R  R  K  V  L  L  I  G  L  I  *  *  R  P  S  M  R  R  K  I  T  G :   F  L  M  K  Q  F  P  S  A  Q  L  V  D  Q  P  S  M  L  L  C  A  G :   I  T  V  G  I  V  E  I  F  S  V  T  N  A  L  R  E  E  L  H  *  Q  L  M  R  M  H  Q  L  L  E  F  V  T  D  V  R :   L  R  F  L  V  G  *  A  A  R  R  K  L  S  I  D  Q  L  D  C  K  V  M  K  T  L  P  R  S  F  R :   R  R  W  R  E  T  E  K  D  H  L  :  A  L  D  K  I  V  R  G  G  *  K  R  L  L  A  L  L  V  Q  Y  I  C  R :   F  K  F  R  A  Q  V  P  R  L  *  N  V  V  F  A  R  I  H  S  S  L  V  R  T  D  F  D  V  F  R  Q  W  K  E  R  L  Q  T  L  F  W  F  L  C  V  L  V  H  C  F  V  H  L  L  I  F  E  P  F  V  T  R  L  W  L  V  A  *  S  L  F  P  G  K  A  I  C  S  F  D  L  Y  *  Q  E  E  I  *  H  F  F  F  S  L  H  G  E  N  I  S  E  F  D  S  S  N  S  S  L  N  Q  F  D  F  L   </second_frame>
            <third_frame>   *  I  P  R  S  L  S  K  S  S  S  F  S  A  S  T  T  L  L  S  S  L  R  S  T  P  G  C  S  *  L  Q  S  *  Y  H  S  E  F  F  V  S  F  S  L  F  N  S  K  L  *  *  Y  W  E  V  *  S  K  W  T  V  F  *  *  T  C  G  *  V  W  E  L  W  F  G  E  R  *  I  W  A  R  Y  L  W  E  T  S  *  K  W  I  W  *  *  W  L  W  R  W  G  V  C  L  S  G  *  *  S  R  A  L  W  G  T  R  D  W  F  K  V  F  D  L  V  V  *  F  *  *  F  W  E  A  N  W  V  *  F  S  E  R  T  F  I  S  S  N  C  K  D  R  Q  G  N  S  Q  G  *  Y  A  A  G  C  E  K  W  C  S  E  V  *  G  E  V  I  S  *  K  W  W  T  E  Y  P  G  C  S  L  P   : D  W  L  G  W  N  P  H  V  G  P  K  H  *  P  D  V  K  N  L  S  S  *  H  G  N  *  T  *   : G  D  G  F  I  Y  L  C  L  L  V  K  K  C  S  G  Y  R  T  K  A  Y  Q  T  A  V  E  Q  L  H  N  Q  F  P  V  R  Y  S  H  G  C  G  C  T   : V  Q  G  D  G  W  K  N  N  V  F  *  I  S  K  G  G  R  T  A  Y  *  E  E  E  R  S  Y  *  L  D  *  Y  S  E  D  R  Q  *  G  E  R  S  L   : G  S  *  *  S  S  F  Q  V  H  S  L  W  I  S  L  Q  C  F  C  A  Q   : A  S  L  S  E  L  W  R  Y  F  L  *  Q  M  H  S  G  K  N  C  T  D  S  *  *  E  C  T  S  C  *  S  L  *  P  M  Y   : G  *  G  F  S  S  A  K  Q  R  E  G  N  C  Q  *  I  N  W  I  A  K  S  *  R  P  C  Q  E  A  S   : G  G  D  G  E  K  P  K  R  I  I  W :   L  *  T  R  S  F  G  E  D  E  R  G  C  L  P  Y  L  Y  S  T  F  A   : G  S  S  S  E  L  R  F  R  D  Y  R  M  W  C  L  P  E  S  I  P  R  *  F  A  L  I  L  M  F  S  V  N  G  R  K  D  C  K  L  F  S  G  F  C  V  F  S  Y  I  V  S  C  I  C  *  Y  L  N  R  L  *  R  A  F  G  W  L  L  D  P  C  F  L  A  R  Q  F  A  H  L  I  C  I  S  R  K  K  S  N  T  F  F  F  L  Y  M  E  K  I  *  V  N  L  I  P  V  T  Q  V  *  I  N  L  I  S  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72698" stop="72123"/>
                    <exon start="71020" stop="70934"/>
                    <exon start="70439" stop="70308"/>
                    <exon start="68580" stop="68449"/>
                    <exon start="66574" stop="66509"/>
                    <exon start="66168" stop="66058"/>
                    <exon start="65777" stop="65685"/>
                    <exon start="65038" stop="65005"/>
                    <exon start="64904" stop="64837"/>
                    <exon start="64734" stop="64657"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1374</number_coding_nucleotides>
                  <number_encoded_amino_acids>458</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FESHGAYQNPVHSQPQQPYYPPYDQPQAAPSYNHSTTPNSSYPSVYSTPNYDNTGKFDQSGQYFDEPVDKYGNYGSGRGEFGQDTYGKRAESGYGNDGYGDGVFAYQGSKVEPYGARGTGSKSSTWSSSFDDFGRPIGYNSPKERSSAPTAKIVKAIPKVDTQQDAKSGVQKFRVKLLAESGGQSTQDVLCQIGLDGIRMLDPSTSRMLRIYPLDTVTRLEATDSSTFAFWSKSAVDIEPRRIRLQSNSYTTSSLLDTVTAAVVQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDHWVPDEAVSKCTACGSAFNAFVRRHHCRNCGDIFCDKCTQGRTALTADENAPVVRVCDRCTAEVSRRLSSAKETVNRSTGLQSHEDLAKKLQEEMERNRKGSSGSRQDRSGRMKEVACPTCTVHLQVQVPSSGSETIECGVCQNPFLVSSH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="67971" e_stop="67234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="67971" e_stop="67234" e_length="738"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67971" stop="67234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328615" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGAGTGTCGACAATCTTGCTAGGCATTGTCCATCGTATGCCTCTGAAATTAATCAAAATCTTCCATAGTTGGCCAGTGATTCTCCAATGCAAAATCAAACAGTGCGGGACTAAGATAATGTTCCTCTTTCTTAGGTTTTCATGTATCAAGACAGCTTCTTTTGCTAGAAGCCATGAGAAACATGCCACCTTCAAAGGTGCTTTGGTCTCCATATTTGTTTCCATGGCCATATGTAGTTCTGTGCCACTGTCGAGTTCAGAAGTTTGTACCCTGAACTTACTTTGTATGCCCTTTTGTTTTCCCGATTCCACCATAGTCTGTCCACCCCATTCTTCAGTCCTTGAAAAGCTTCAAGGATTTTGAAGAACTCAATCAGTCTAGGAATTTTCCAATCATTCAAGTTTCTTGTAAAATTTAATTCCCAGCCTTGGAGCGCTCACATGTCAGCTATTGTTCTGTCCTGACAGATAACTAAATCAAACAGATCAGGGAACTTCTCTGCAAGATTCCAATTACCTAACCACCTATCTTTCCACAAGATGGTTTTATTACCATCACGACATCACCTACACTAATGGTAGTGTGGTTACCTAAAATTGTCCACCAGTTTCTGATAGATCTCCAAACAGTGACATGATAAGGGTTGTTTGCTTCTTCAGTCATCCACCCATCCAGTTCTCCATACTTTGTTGTAATCACCTTTTTCCATAGAGAGTTTGTCTCATGGGCATATCTCCA</gDNA_template>
            <first_frame> R  V  S  T  I  L  L  G  I  V  H  R  M  P  L  K  L  I  K  I  F  H  S  W  P  V  I  L  Q  C  K  I  K  Q  C  G  T  K  I  M  F  L  F  L  R  F  S  C  I  K  T  A  S  F  A  R  S  H  E  K  H  A  T  F  K  G  A  L  V  S  I  F  V  S  M  A  I  C  S  S  V  P  L  S  S  S  E  V  C  T  L  N  L  L  C  M  P  F  C  F  P  D  S  T  I  V  C  P  P  H  S  S  V  L  E  K  L  Q  G  F  *  R  T  Q  S  V  *  E  F  S  N  H  S  S  F  L  *  N  L  I  P  S  L  G  A  L  T  C  Q  L  L  F  C  P  D  R  *  L  N  Q  T  D  Q  G  T  S  L  Q  D  S  N  Y  L  T  T  Y  L  S  T  R  W  F  Y  Y  H  H  D  I  T  Y  T  N  G  S  V  V  T  *  N  C  P  P  V  S  D  R  S  P  N  S  D  M  I  R  V  V  C  F  F  S  H  P  P  I  Q  F  S  I  L  C  C  N  H  L  F  P  *  R  V  C  L  M  G  I  S  P </first_frame>
            <second_frame>  E  C  R  Q  S  C  *  A  L  S  I  V  C  L  *  N  *  S  K  S  S  I  V  G  Q  *  F  S  N  A  K  S  N  S  A  G  L  R  *  C  S  S  F  L  G  F  H  V  S  R  Q  L  L  L  L  E  A  M  R  N  M  P  P  S  K  V  L  W  S  P  Y  L  F  P  W  P  Y  V  V  L  C  H  C  R  V  Q  K  F  V  P  *  T  Y  F  V  C  P  F  V  F  P  I  P  P  *  S  V  H  P  I  L  Q  S  L  K  S  F  K  D  F  E  E  L  N  Q  S  R  N  F  P  I  I  Q  V  S  C  K  I  *  F  P  A  L  E  R  S  H  V  S  Y  C  S  V  L  T  D  N  *  I  K  Q  I  R  E  L  L  C  K  I  P  I  T  *  P  P  I  F  P  Q  D  G  F  I  T  I  T  T  S  P  T  L  M  V  V  W  L  P  K  I  V  H  Q  F  L  I  D  L  Q  T  V  T  *  *  G  L  F  A  S  S  V  I  H  P  S  S  S  P  Y  F  V  V  I  T  F  F  H  R  E  F  V  S  W  A  Y  L   </second_frame>
            <third_frame>   S  V  D  N  L  A  R  H  C  P  S  Y  A  S  E  I  N  Q  N  L  P  *  L  A  S  D  S  P  M  Q  N  Q  T  V  R  D  *  D  N  V  P  L  S  *  V  F  M  Y  Q  D  S  F  F  C  *  K  P  *  E  T  C  H  L  Q  R  C  F  G  L  H  I  C  F  H  G  H  M  *  F  C  A  T  V  E  F  R  S  L  Y  P  E  L  T  L  Y  A  L  L  F  S  R  F  H  H  S  L  S  T  P  F  F  S  P  *  K  A  S  R  I  L  K  N  S  I  S  L  G  I  F  Q  S  F  K  F  L  V  K  F  N  S  Q  P  W  S  A  H  M  S  A  I  V  L  S  *  Q  I  T  K  S  N  R  S  G  N  F  S  A  R  F  Q  L  P  N  H  L  S  F  H  K  M  V  L  L  P  S  R  H  H  L  H  *  W  *  C  G  Y  L  K  L  S  T  S  F  *  *  I  S  K  Q  *  H  D  K  G  C  L  L  L  Q  S  S  T  H  P  V  L  H  T  L  L  *  S  P  F  S  I  E  S  L  S  H  G  H  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67971" stop="67609"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSTILLGIVHRMPLKLIKIFHSWPVILQCKIKQCGTKIMFLFLRFSCIKTASFARSHEKHATFKGALVSIFVSMAICSSVPLSSSEVCTLNLLCMPFCFPDSTIVCPPHSSVLEKLQGF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="68998" e_stop="68310"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="68998" e_stop="68310" e_length="689"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68998" stop="68310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAGCTACTTTATGTGAAAGCGAGTGTGCACACACACATGAACACATACATATACTGCCTGAAGATAGAGAAGGATTTCACATCAAACAGTATATGCATTCAGGGGAGGAACTAGTAACAAGCAAGGGAGTTCAACCAGATCCCTTTCATTGGAAAATTATACTGTGGAAATAGGGAAAAAGTTTTTTTTTTGTTATATATTAATTGTTGAATTTCTTTGACATAAGGTCTTAGTGGTACAGGGGTTCAACATTTGCTTTCGATCAGACATTTAGATCCCAAATAAGGCATGCTAGTAAATTTTTAGATCCCCTTGTATAAGTTTCTGGTTCTGCTGGTATATGCAATAGTACACCGAGAGAGACCAACACAATATGTGTGAACTTCTTGAAAATAACTTTTTCTTTTCCTTCAAGCAGTTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAGATCACTGGGTAACATCTTCTATTTTATTTTGTTTTCACACGCCTCATTTTTACATGATATAATGATTAGCTACGACTATACTTTCTCGTTCAACATTTTTTTTAAAAAAAGAGTGATTCTTTCTTGTCAGTTTTTTCTCATCTTTTT</gDNA_template>
            <first_frame> E  L  L  Y  V  K  A  S  V  H  T  H  M  N  T  Y  I  Y  C  L  K  I  E  K  D  F  T  S  N  S  I  C  I  Q  G  R  N  *  *  Q  A  R  E  F  N  Q  I  P  F  I  G  K  L  Y  C  G  N  R  E  K  V  F  F  L  L  Y  I  N  C  *  I  S  L  T  *  G  L  S  G  T  G  V  Q  H  L  L  S  I  R  H  L  D  P  K  *  G  M  L  V  N  F  *  I  P  L  Y  K  F  L  V  L  L  V  Y  A  I  V  H  R  E  R  P  T  Q  Y  V  *  T  S  *  K  *  L  F  L  F  L  Q  A  V  Q  G  D  G  W  K  N  N  V  F  *  I  S  K  G  G  R  T  A  Y  *  E  E  E  R  S  Y  *  L  D  *  Y  S  E  D  R  Q  *  G  E  R  S  L  G  N  I  F  Y  F  I  L  F  S  H  A  S  F  L  H  D  I  M  I  S  Y  D  Y  T  F  S  F  N  I  F  F  K  K  R  V  I  L  S  C  Q  F  F  L  I  F   </first_frame>
            <second_frame>  S  Y  F  M  *  K  R  V  C  T  H  T  *  T  H  T  Y  T  A  *  R  *  R  R  I  S  H  Q  T  V  Y  A  F  R  G  G  T  S  N  K  Q  G  S  S  T  R  S  L  S  L  E  N  Y  T  V  E  I  G  K  K  F  F  F  C  Y  I  L  I  V  E  F  L  *  H  K  V  L  V  V  Q  G  F  N  I  C  F  R  S  D  I  *  I  P  N  K  A  C  *  *  I  F  R  S  P  C  I  S  F  W  F  C  W  Y  M  Q  *  Y  T  E  R  D  Q  H  N  M  C  E  L  L  E  N  N  F  F  F  S  F  K  Q  F  K  E  M  G  G  R  I  M  S  S  E  S  P  K  V  A  E  Q  P  T  E  K  K  K  G  L  T  D  W  I  N  I  V  K  T  V  N  E  E  K  D  H  W  V  T  S  S  I  L  F  C  F  H  T  P  H  F  Y  M  I  *  *  L  A  T  T  I  L  S  R  S  T  F  F  L  K  K  E  *  F  F  L  V  S  F  F  S  S  F  </second_frame>
            <third_frame>   A  T  L  C  E  S  E  C  A  H  T  H  E  H  I  H  I  L  P  E  D  R  E  G  F  H  I  K  Q  Y  M  H  S  G  E  E  L  V  T  S  K  G  V  Q  P  D  P  F  H  W  K  I  I  L  W  K  *  G  K  S  F  F  F  V  I  Y  *  L  L  N  F  F  D  I  R  S  *  W  Y  R  G  S  T  F  A  F  D  Q  T  F  R  S  Q  I  R  H  A  S  K  F  L  D  P  L  V  *  V  S  G  S  A  G  I  C  N  S  T  P  R  E  T  N  T  I  C  V  N  F  L  K  I  T  F  S  F  P  S  S  S  S  R  R  W  V  E  E  *  C  L  L  N  L  Q  R  W  Q  N  S  L  L  R  R  R  K  V  L  L  I  G  L  I  *  *  R  P  S  M  R  R  K  I  T  G  *  H  L  L  F  Y  F  V  F  T  R  L  I  F  T  *  Y  N  D  *  L  R  L  Y  F  L  V  Q  H  F  F  *  K  K  S  D  S  F  L  S  V  F  S  H  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68649" stop="68395"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTERDQHNMCELLENNFFFSFKQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDHWVTSSILFCFHTPHFYMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="72291" e_stop="72123"/>
            <exon e_start="71020" e_stop="70934"/>
            <exon e_start="70439" e_stop="70308"/>
            <exon e_start="68580" e_stop="68457"/>
            <exon e_start="65730" e_stop="65685"/>
            <exon e_start="65038" e_stop="65005"/>
            <exon e_start="64904" e_stop="64837"/>
            <exon e_start="64734" e_stop="64493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.980" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72291" e_stop="72123" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.985">
            <gDNA_intron_boundary i_start="72122" i_stop="71021" i_length="1102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71020" e_stop="70934" e_length="87"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="70933" i_stop="70440" i_length="494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70439" e_stop="70308" e_length="132"/>
          </exon>
          <intron i_serial="3" don_prob="0.980" acc_prob="0.945">
            <gDNA_intron_boundary i_start="70307" i_stop="68581" i_length="1727"/>
          </intron>
          <exon e_serial="4" e_score="0.992">
            <gDNA_exon_boundary e_start="68580" e_stop="68457" e_length="124"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68456" i_stop="65731" i_length="2726"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="65730" e_stop="65685" e_length="46"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="65684" i_stop="65039" i_length="646"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="65038" e_stop="65005" e_length="34"/>
          </exon>
          <intron i_serial="6" don_prob="0.988" acc_prob="0.840">
            <gDNA_intron_boundary i_start="65004" i_stop="64905" i_length="100"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="64904" e_stop="64837" e_length="68"/>
          </exon>
          <intron i_serial="7" don_prob="0.943" acc_prob="0.998">
            <gDNA_intron_boundary i_start="64836" i_stop="64735" i_length="102"/>
          </intron>
          <exon e_serial="8" e_score="0.930">
            <gDNA_exon_boundary e_start="64734" e_stop="64493" e_length="242"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72291" stop="72123"/>
              <exon start="71020" stop="70934"/>
              <exon start="70439" stop="70308"/>
              <exon start="68580" stop="68457"/>
              <exon start="65730" stop="65685"/>
              <exon start="65038" stop="65005"/>
              <exon start="64904" stop="64837"/>
              <exon start="64734" stop="64493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336611" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGGTATAATTCTCCGAAAGAACGTTCATCAGCTCCAACTGCAAAGATCGTCAAGGCAATTCCCAAGGTTGATACGCAGCAGGATGCGAAAAGTGGTGTTCAGAAGTTTAGGGTGAAGTTATTAGCTGAAAGTGGTGGACAGAGTACCCAGGATGTTCTTTGCCAG : ATTGGCTTGGATGGAATCCGCATGTTGGACCCAAGCACTAGCCGGATGTTAAGAATTTATCCTCTTGACACGGTAACTAGACTTGAG : GCGACGGATTCATCTACCTTTGCCTTCTGGTCAAAAAGTGCAGTGGATATAGAACCAAGGCGTATCAGACTGCAGTCGAACAGTTACACAACCAGTTCCCTGTTAGATACAGTCACGGCTGCGGTTGTACAG : TTCAAGGAGATGGGTGGAAGAATAATGTCTTCTGAATCTCCAAAGGTGGCAGAACAGCCTACTGAGAAGAAGAAAGGTCTTACTGATTGGATTAATATAGTGAAGACCGTCAATGAGGAGAAAG : ATCAACTGGATTGCAAAGTCATGAAGACCTTGCCAAGAAGCTTCAG : GAGGAGATGGAGAGAAACCGAAAAGGATCATCTG : GCTCTAGACAAGATCGTTCGGGGAGGATGAAAGAGGTTGCTTGCCCTACTTGTACAGTACATTTGCAG : GTTCAAGTTCCGAGCTCAGGTTCCGAGACTATAGAATGTGGTGTTTGCCAGAATCCATTCCTCGTTAGTTCGCACTGATTTTGATGTTTTCCGTCAATGGAAGGAAAGACTGCAAACTCTTTTCTGGTTTTTGTGTGTTCTCGTACATTGTTTCGTGCATCTGTTAATATTTGAACCGTTTGTGACGCGCCTTTGGTTGGTTGCTTGATCCTTGTTTCCTGGCAAGGCAATTTGCTCATTTG</gDNA_template>
            <first_frame> N  W  V  *  F  S  E  R  T  F  I  S  S  N  C  K  D  R  Q  G  N  S  Q  G  *  Y  A  A  G  C  E  K  W  C  S  E  V  *  G  E  V  I  S  *  K  W  W  T  E  Y  P  G  C  S  L  P   : D  W  L  G  W  N  P  H  V  G  P  K  H  *  P  D  V  K  N  L  S  S  *  H  G  N  *  T  *   : G  D  G  F  I  Y  L  C  L  L  V  K  K  C  S  G  Y  R  T  K  A  Y  Q  T  A  V  E  Q  L  H  N  Q  F  P  V  R  Y  S  H  G  C  G  C  T   : V  Q  G  D  G  W  K  N  N  V  F  *  I  S  K  G  G  R  T  A  Y  *  E  E  E  R  S  Y  *  L  D  *  Y  S  E  D  R  Q  *  G  E  R :   S  T  G  L  Q  S  H  E  D  L  A  K  K  L  Q  :  E  E  M  E  R  N  R  K  G  S  S   : G  S  R  Q  D  R  S  G  R  M  K  E  V  A  C  P  T  C  T  V  H  L  Q  :  V  Q  V  P  S  S  G  S  E  T  I  E  C  G  V  C  Q  N  P  F  L  V  S  S  H  *  F  *  C  F  P  S  M  E  G  K  T  A  N  S  F  L  V  F  V  C  S  R  T  L  F  R  A  S  V  N  I  *  T  V  C  D  A  P  L  V  G  C  L  I  L  V  S  W  Q  G  N  L  L  I   </first_frame>
            <second_frame>  I  G  Y  N  S  P  K  E  R  S  S  A  P  T  A  K  I  V  K  A  I  P  K  V  D  T  Q  Q  D  A  K  S  G  V  Q  K  F  R  V  K  L  L  A  E  S  G  G  Q  S  T  Q  D  V  L  C  Q  :  I  G  L  D  G  I  R  M  L  D  P  S  T  S  R  M  L  R  I  Y  P  L  D  T  V  T  R  L  E  :  A  T  D  S  S  T  F  A  F  W  S  K  S  A  V  D  I  E  P  R  R  I  R  L  Q  S  N  S  Y  T  T  S  S  L  L  D  T  V  T  A  A  V  V  Q  :  F  K  E  M  G  G  R  I  M  S  S  E  S  P  K  V  A  E  Q  P  T  E  K  K  K  G  L  T  D  W  I  N  I  V  K  T  V  N  E  E  K   : D  Q  L  D  C  K  V  M  K  T  L  P  R  S  F  R :   R  R  W  R  E  T  E  K  D  H  L  :  A  L  D  K  I  V  R  G  G  *  K  R  L  L  A  L  L  V  Q  Y  I  C  R :   F  K  F  R  A  Q  V  P  R  L  *  N  V  V  F  A  R  I  H  S  S  L  V  R  T  D  F  D  V  F  R  Q  W  K  E  R  L  Q  T  L  F  W  F  L  C  V  L  V  H  C  F  V  H  L  L  I  F  E  P  F  V  T  R  L  W  L  V  A  *  S  L  F  P  G  K  A  I  C  S  F  </second_frame>
            <third_frame>   L  G  I  I  L  R  K  N  V  H  Q  L  Q  L  Q  R  S  S  R  Q  F  P  R  L  I  R  S  R  M  R  K  V  V  F  R  S  L  G  *  S  Y  *  L  K  V  V  D  R  V  P  R  M  F  F  A  R :   L  A  W  M  E  S  A  C  W  T  Q  A  L  A  G  C  *  E  F  I  L  L  T  R  *  L  D  L  R :   R  R  I  H  L  P  L  P  S  G  Q  K  V  Q  W  I  *  N  Q  G  V  S  D  C  S  R  T  V  T  Q  P  V  P  C  *  I  Q  S  R  L  R  L  Y  S :   S  R  R  W  V  E  E  *  C  L  L  N  L  Q  R  W  Q  N  S  L  L  R  R  R  K  V  L  L  I  G  L  I  *  *  R  P  S  M  R  R  K  :  I  N  W  I  A  K  S  *  R  P  C  Q  E  A  S   : G  G  D  G  E  K  P  K  R  I  I  W :   L  *  T  R  S  F  G  E  D  E  R  G  C  L  P  Y  L  Y  S  T  F  A   : G  S  S  S  E  L  R  F  R  D  Y  R  M  W  C  L  P  E  S  I  P  R  *  F  A  L  I  L  M  F  S  V  N  G  R  K  D  C  K  L  F  S  G  F  C  V  F  S  Y  I  V  S  C  I  C  *  Y  L  N  R  L  *  R  A  F  G  W  L  L  D  P  C  F  L  A  R  Q  F  A  H  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72290" stop="72123"/>
                    <exon start="71020" stop="70934"/>
                    <exon start="70439" stop="70308"/>
                    <exon start="68580" stop="68457"/>
                    <exon start="65730" stop="65685"/>
                    <exon start="65038" stop="65005"/>
                    <exon start="64904" stop="64875"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>618</number_coding_nucleotides>
                  <number_encoded_amino_acids>206</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGYNSPKERSSAPTAKIVKAIPKVDTQQDAKSGVQKFRVKLLAESGGQSTQDVLCQIGLDGIRMLDPSTSRMLRIYPLDTVTRLEATDSSTFAFWSKSAVDIEPRRIRLQSNSYTTSSLLDTVTAAVVQFKEMGGRIMSSESPKVAEQPTEKKKGLTDWINIVKTVNEEKDQLDCKVMKTLPRSFRRRWRETEKDHLALDKIVRGG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="78206" PGL_stop="74237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78206" e_stop="77826"/>
            <exon e_start="76677" e_stop="76543"/>
            <exon e_start="76274" e_stop="76196"/>
            <exon e_start="76010" e_stop="75916"/>
            <exon e_start="75010" e_stop="74843"/>
            <exon e_start="74748" e_stop="74237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.922" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.125" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78206" e_stop="77826" e_length="381"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.922">
            <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="76677" e_stop="76543" e_length="135"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.125">
            <gDNA_intron_boundary i_start="76542" i_stop="76275" i_length="268"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76274" e_stop="76196" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="76195" i_stop="76011" i_length="185"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="76010" e_stop="75916" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.974">
            <gDNA_intron_boundary i_start="75915" i_stop="75011" i_length="905"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="75010" e_stop="74843" e_length="168"/>
          </exon>
          <intron i_serial="5" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="74842" i_stop="74749" i_length="94"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74748" e_stop="74237" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78206" stop="77826"/>
              <exon start="76677" stop="76543"/>
              <exon start="76274" stop="76196"/>
              <exon start="76010" stop="75916"/>
              <exon start="75010" stop="74843"/>
              <exon start="74748" stop="74237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317735" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTTTGCATTTTCCAGATCTTCGGAAGAGGAAAGAGGATCGCCGGAATGAGGAGAGTCAGTAGAATCGCCGCCTTGTACCGGGCAGTCGACGGTGCAGCCGCCATGGAGGTGCCACAGCATAGGATGTCTACGGCGGCTCAGTTTAGCACGAGCAGCAACAAATCATCTACCAGGTCTAACTGGTTATTCAACAATTTGCTCACGGATCTATCTGCTAGAACCTCAGCTCATGCTGTTGCTGGAACAATGCTTTTCTCGGTGGCGGCTACCACGTTGACCGAGGAAGTTCACGCTAAAGAAGTAGTGCCACCGGAATTACGCCCAAAAGATCTTGTCCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG : CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAG : ACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAA : GTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATACCTCAGAAGCTCTTGAATCGTTCGATTACATCACTAGTCATG : GTAATTTCAGCTTTACGGAGAGAATAACTGCCAAGTATGCTGGAGCTGCAGCCATGTATTTTGTTTCGAAGAAATTGAAGAAGAAATATAATATTACAGATGAGCGTGCAGCCCTGTATGAAGCTGCAGAAACATGGGTTGATGCTCTTAAGGGCCGAGATTTTCTTG : GTGGCTCTAAACCAAACTTAGCAGATCTTGCTGTATATGGCGTTTTGAGACCCATACGCTATCTGAAATCTGGTAGAGACATGGTGGAGAACACACGTATTGGTGATTGGTACTCTCGAATGGAAAGTGAAGTAGGCGTGTCTGCTAGAATTCAAGCTTAAATGACATCTATTGGTCAATGGGCAAATCACATTCAGGGACAGTTTTTGACACTAGTTGATTACAGTTCCGATAAAGAACATTACTTCCAAGCCAGTGACAAATTATTAATATATAAAGAAGTGCACTTTCACAAAGTTTTGGTAGTTAGATACAAAATAAATTTGGATGTGGGCTTGTTACCATTCTACATTAACTTATTCTTTTGGATGTAAGTTCTATTTGAGGTGTGCTGAGACAATACTTGCAGTTTACACCATTTTTTACCCAATGGTGTAAAAACTCGTCACTTTCATGTGCTAATTTTACTTCTGATTTTGTCCAAATACAATACATTGAACTTTTTCCCCCAA</gDNA_template>
            <first_frame> K  F  A  F  S  R  S  S  E  E  E  R  G  S  P  E  *  G  E  S  V  E  S  P  P  C  T  G  Q  S  T  V  Q  P  P  W  R  C  H  S  I  G  C  L  R  R  L  S  L  A  R  A  A  T  N  H  L  P  G  L  T  G  Y  S  T  I  C  S  R  I  Y  L  L  E  P  Q  L  M  L  L  L  E  Q  C  F  S  R  W  R  L  P  R  *  P  R  K  F  T  L  K  K  *  C  H  R  N  Y  A  Q  K  I  L  S  F  I  S  M  K  L  V  L  S  V  T  R  L  K  :  H  S  S  T  T  M  T  Y  H  T  R  S  L  R  S  I  P  S  A  K  K  N  S  S  G  L  I  I  R  K  C  L  L  C  W  L  T  V  N  R  W  *  T  H  Q  :  T  L  L  I  N  C  T  R  R  F  V  L  V  I  L  H  L  M  L  M  K  R  A  N  G  A   : S  G  W  M  I  T  W  C  T  C  Y  H  L  T  Y  T  E  I  P  Q  K  L  L  N  R  S  I  T  S  L  V  M  :  V  I  S  A  L  R  R  E  *  L  P  S  M  L  E  L  Q  P  C  I  L  F  R  R  N  *  R  R  N  I  I  L  Q  M  S  V  Q  P  C  M  K  L  Q  K  H  G  L  M  L  L  R  A  E  I  F  L  :  V  A  L  N  Q  T  *  Q  I  L  L  Y  M  A  F  *  D  P  Y  A  I  *  N  L  V  E  T  W  W  R  T  H  V  L  V  I  G  T  L  E  W  K  V  K  *  A  C  L  L  E  F  K  L  K  *  H  L  L  V  N  G  Q  I  T  F  R  D  S  F  *  H  *  L  I  T  V  P  I  K  N  I  T  S  K  P  V  T  N  Y  *  Y  I  K  K  C  T  F  T  K  F  W  *  L  D  T  K  *  I  W  M  W  A  C  Y  H  S  T  L  T  Y  S  F  G  C  K  F  Y  L  R  C  A  E  T  I  L  A  V  Y  T  I  F  Y  P  M  V  *  K  L  V  T  F  M  C  *  F  Y  F  *  F  C  P  N  T  I  H  *  T  F  S  P   </first_frame>
            <second_frame>  S  L  H  F  P  D  L  R  K  R  K  E  D  R  R  N  E  E  S  Q  *  N  R  R  L  V  P  G  S  R  R  C  S  R  H  G  G  A  T  A  *  D  V  Y  G  G  S  V  *  H  E  Q  Q  Q  I  I  Y  Q  V  *  L  V  I  Q  Q  F  A  H  G  S  I  C  *  N  L  S  S  C  C  C  W  N  N  A  F  L  G  G  G  Y  H  V  D  R  G  S  S  R  *  R  S  S  A  T  G  I  T  P  K  R  S  C  P  L  S  V  *  S  L  S  F  L  *  Q  G  *  S :   I  P  R  L  L  *  L  T  I  Q  D  H  *  G  Q  S  H  Q  Q  K  R  T  Q  V  V  *  L  *  E  S  A  C  C  V  G  *  R  *  T  D  G  E  L  I  R :   H  Y  *  *  I  V  R  E  G  S  F  W  *  F  Y  I  *  C  *  *  R  E  Q  M  A  Q  :  V  G  G  *  S  L  G  A  H  V  I  T  *  H  I  P  K  Y  L  R  S  S  *  I  V  R  L  H  H  *  S  W :   *  F  Q  L  Y  G  E  N  N  C  Q  V  C  W  S  C  S  H  V  F  C  F  E  E  I  E  E  E  I  *  Y  Y  R  *  A  C  S  P  V  *  S  C  R  N  M  G  *  C  S  *  G  P  R  F  S  W :   W  L  *  T  K  L  S  R  S  C  C  I  W  R  F  E  T  H  T  L  S  E  I  W  *  R  H  G  G  E  H  T  Y  W  *  L  V  L  S  N  G  K  *  S  R  R  V  C  *  N  S  S  L  N  D  I  Y  W  S  M  G  K  S  H  S  G  T  V  F  D  T  S  *  L  Q  F  R  *  R  T  L  L  P  S  Q  *  Q  I  I  N  I  *  R  S  A  L  S  Q  S  F  G  S  *  I  Q  N  K  F  G  C  G  L  V  T  I  L  H  *  L  I  L  L  D  V  S  S  I  *  G  V  L  R  Q  Y  L  Q  F  T  P  F  F  T  Q  W  C  K  N  S  S  L  S  C  A  N  F  T  S  D  F  V  Q  I  Q  Y  I  E  L  F  P  P  </second_frame>
            <third_frame>   V  C  I  F  Q  I  F  G  R  G  K  R  I  A  G  M  R  R  V  S  R  I  A  A  L  Y  R  A  V  D  G  A  A  A  M  E  V  P  Q  H  R  M  S  T  A  A  Q  F  S  T  S  S  N  K  S  S  T  R  S  N  W  L  F  N  N  L  L  T  D  L  S  A  R  T  S  A  H  A  V  A  G  T  M  L  F  S  V  A  A  T  T  L  T  E  E  V  H  A  K  E  V  V  P  P  E  L  R  P  K  D  L  V  L  Y  Q  Y  E  A  C  P  F  C  N  K  V  K   : A  F  L  D  Y  Y  D  L  P  Y  K  I  I  E  V  N  P  I  S  K  K  E  L  K  W  S  D  Y  K  K  V  P  V  V  L  V  D  G  E  Q  M  V  N  S  S   : D  I  I  D  K  L  Y  E  K  V  R  S  G  D  S  T  F  D  A  D  E  E  S  K  W  R  K :   W  V  D  D  H  L  V  H  M  L  S  P  N  I  Y  R  N  T  S  E  A  L  E  S  F  D  Y  I  T  S  H   : G  N  F  S  F  T  E  R  I  T  A  K  Y  A  G  A  A  A  M  Y  F  V  S  K  K  L  K  K  K  Y  N  I  T  D  E  R  A  A  L  Y  E  A  A  E  T  W  V  D  A  L  K  G  R  D  F  L   : G  G  S  K  P  N  L  A  D  L  A  V  Y  G  V  L  R  P  I  R  Y  L  K  S  G  R  D  M  V  E  N  T  R  I  G  D  W  Y  S  R  M  E  S  E  V  G  V  S  A  R  I  Q  A  *  M  T  S  I  G  Q  W  A  N  H  I  Q  G  Q  F  L  T  L  V  D  Y  S  S  D  K  E  H  Y  F  Q  A  S  D  K  L  L  I  Y  K  E  V  H  F  H  K  V  L  V  V  R  Y  K  I  N  L  D  V  G  L  L  P  F  Y  I  N  L  F  F  W  M  *  V  L  F  E  V  C  *  D  N  T  C  S  L  H  H  F  L  P  N  G  V  K  T  R  H  F  H  V  L  I  L  L  L  I  L  S  K  Y  N  T  L  N  F  F  P  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78204" stop="77826"/>
                    <exon start="76677" stop="76543"/>
                    <exon start="76274" stop="76196"/>
                    <exon start="76010" stop="75916"/>
                    <exon start="75010" stop="74843"/>
                    <exon start="74748" stop="74588"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VCIFQIFGRGKRIAGMRRVSRIAALYRAVDGAAAMEVPQHRMSTAAQFSTSSNKSSTRSNWLFNNLLTDLSARTSAHAVAGTMLFSVAATTLTEEVHAKEVVPPELRPKDLVLYQYEACPFCNKVKAFLDYYDLPYKIIEVNPISKKELKWSDYKKVPVVLVDGEQMVNSSDIIDKLYEKVRSGDSTFDADEESKWRKWVDDHLVHMLSPNIYRNTSEALESFDYITSHGNFSFTERITAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALKGRDFLGGSKPNLADLAVYGVLRPIRYLKSGRDMVENTRIGDWYSRMESEVGVSARIQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74587" stop="74375"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTSIGQWANHIQGQFLTLVDYSSDKEHYFQASDKLLIYKEVHFHKVLVVRYKINLDVGLLPFYINLFFWM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="77869" e_stop="77826"/>
            <exon e_start="76677" e_stop="75958"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.886" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="77869" e_stop="77826" e_length="44"/>
          </exon>
          <intron i_serial="1" don_prob="0.886" acc_prob="0.922">
            <gDNA_intron_boundary i_start="77825" i_stop="76678" i_length="1148"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="76677" e_stop="75958" e_length="720"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77869" stop="77826"/>
              <exon start="76677" stop="75958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTTTATCAGTATGAAGCTTGTCCTTTCTGTAACAAGGTTAAAG : CATTCCTCGACTACTATGACTTACCATACAAGATCATTGAGGTCAATCCCATCAGCAAAAAAGAACTCAAGTGGTCTGATTATAAGAAAGTGCCTGTTGTGTTGGTTGACGGTGAACAGATGGTGAACTCATCAGGTACTTATTATCATCAATACATTTACAGCTATTATGCAGGTACAATGCGATCAAAAGTATTTAATTTTTTTACACAAGTAATTGCAAGATGCATCTCGACTGTTGGTAAAATTAATTGAAGTCCTATTCATTTGGAGTGTTAGTAAAATAAGATAACTATATCTGCATTAAAGATGGATAGAATGGATTACAGAGGATCTGGTTTATACTTGTCTCTTCTATGGTTACTTCTAAATACTTTTCCTTTGCACTTTTCTATGGATAATAGACATTATTGATAAATTGTACGAGAAGGTTCGTTCTGGTGATTCTACATTTGATGCTGATGAAGAGAGCAAATGGCGCAAGTATGCACTTCTTCTTCCATTTATGACTTTTCCATAGCGTTTTCCTCTTAAGATAAATGATATTTGTGAATTAAGTAATCAAGTCAGTAAGTGATGTGGCAAAATTAGCGTTTCTTAATTGAAGCCTTTTGCTCTTTGTTAGGTACTTGGGTCTTATCTAATGATCGTGATTCTCACAAATGCAGGTGGGTGGATGATCACTTGGTGCACATGTTATCACCTAACATATACCGAAATA</gDNA_template>
            <first_frame> P  L  S  V  *  S  L  S  F  L  *  Q  G  *  S :   I  P  R  L  L  *  L  T  I  Q  D  H  *  G  Q  S  H  Q  Q  K  R  T  Q  V  V  *  L  *  E  S  A  C  C  V  G  *  R  *  T  D  G  E  L  I  R  Y  L  L  S  S  I  H  L  Q  L  L  C  R  Y  N  A  I  K  S  I  *  F  F  Y  T  S  N  C  K  M  H  L  D  C  W  *  N  *  L  K  S  Y  S  F  G  V  L  V  K  *  D  N  Y  I  C  I  K  D  G  *  N  G  L  Q  R  I  W  F  I  L  V  S  S  M  V  T  S  K  Y  F  S  F  A  L  F  Y  G  *  *  T  L  L  I  N  C  T  R  R  F  V  L  V  I  L  H  L  M  L  M  K  R  A  N  G  A  S  M  H  F  F  F  H  L  *  L  F  H  S  V  F  L  L  R  *  M  I  F  V  N  *  V  I  K  S  V  S  D  V  A  K  L  A  F  L  N  *  S  L  L  L  F  V  R  Y  L  G  L  I  *  *  S  *  F  S  Q  M  Q  V  G  G  *  S  L  G  A  H  V  I  T  *  H  I  P  K   </first_frame>
            <second_frame>  L  Y  Q  Y  E  A  C  P  F  C  N  K  V  K   : A  F  L  D  Y  Y  D  L  P  Y  K  I  I  E  V  N  P  I  S  K  K  E  L  K  W  S  D  Y  K  K  V  P  V  V  L  V  D  G  E  Q  M  V  N  S  S  G  T  Y  Y  H  Q  Y  I  Y  S  Y  Y  A  G  T  M  R  S  K  V  F  N  F  F  T  Q  V  I  A  R  C  I  S  T  V  G  K  I  N  *  S  P  I  H  L  E  C  *  *  N  K  I  T  I  S  A  L  K  M  D  R  M  D  Y  R  G  S  G  L  Y  L  S  L  L  W  L  L  L  N  T  F  P  L  H  F  S  M  D  N  R  H  Y  *  *  I  V  R  E  G  S  F  W  *  F  Y  I  *  C  *  *  R  E  Q  M  A  Q  V  C  T  S  S  S  I  Y  D  F  S  I  A  F  S  S  *  D  K  *  Y  L  *  I  K  *  S  S  Q  *  V  M  W  Q  N  *  R  F  L  I  E  A  F  C  S  L  L  G  T  W  V  L  S  N  D  R  D  S  H  K  C  R  W  V  D  D  H  L  V  H  M  L  S  P  N  I  Y  R  N  </second_frame>
            <third_frame>   F  I  S  M  K  L  V  L  S  V  T  R  L  K  :  H  S  S  T  T  M  T  Y  H  T  R  S  L  R  S  I  P  S  A  K  K  N  S  S  G  L  I  I  R  K  C  L  L  C  W  L  T  V  N  R  W  *  T  H  Q  V  L  I  I  I  N  T  F  T  A  I  M  Q  V  Q  C  D  Q  K  Y  L  I  F  L  H  K  *  L  Q  D  A  S  R  L  L  V  K  L  I  E  V  L  F  I  W  S  V  S  K  I  R  *  L  Y  L  H  *  R  W  I  E  W  I  T  E  D  L  V  Y  T  C  L  F  Y  G  Y  F  *  I  L  F  L  C  T  F  L  W  I  I  D  I  I  D  K  L  Y  E  K  V  R  S  G  D  S  T  F  D  A  D  E  E  S  K  W  R  K  Y  A  L  L  L  P  F  M  T  F  P  *  R  F  P  L  K  I  N  D  I  C  E  L  S  N  Q  V  S  K  *  C  G  K  I  S  V  S  *  L  K  P  F  A  L  C  *  V  L  G  S  Y  L  M  I  V  I  L  T  N  A  G  G  W  M  I  T  W  C  T  C  Y  H  L  T  Y  T  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77868" stop="77826"/>
                    <exon start="76677" stop="76424"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYQYEACPFCNKVKAFLDYYDLPYKIIEVNPISKKELKWSDYKKVPVVLVDGEQMVNSSGTYYHQYIYSYYAGTMRSKVFNFFTQVIARCISTVGKIN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="79709" PGL_stop="82477"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="79722" e_stop="80027"/>
            <exon e_start="81319" e_stop="81643"/>
            <exon e_start="81737" e_stop="82477"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.936" acc_prob="0.967" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.934" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="79722" e_stop="80027" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.936" acc_prob="0.967">
            <gDNA_intron_boundary i_start="80028" i_stop="81318" i_length="1291"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="81319" e_stop="81643" e_length="325"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.934">
            <gDNA_intron_boundary i_start="81644" i_stop="81736" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81737" e_stop="82477" e_length="741"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79722" stop="80027"/>
              <exon start="81319" stop="81643"/>
              <exon start="81737" stop="82477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81880" stop="82472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334786" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAG : CTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAGAAGAGAAGAAGGCTAAAAAGGAGAAGAGTAATCTTGGATTTGGCAAGGCCACTCATGAGTCCAAAGGGAAGTACTTGTTCAAATGTTTCGAAGATGAACCTGAGCAGTTGGAGAGGAGCAATCTCACTGAGGAACATGAGCCTGCTGTGTGTTCACAGAATTCCAGCTGCTCATCCGACAGCACCCAGAACAGTAATAAAAGGAAGAGGCCTACTTCACCTTCACCTTCACGAGGTGGCATACAGGCGCATG : GTAGCATTATCAGAATTAGATTGTCTAAAAAGGGTGTGCAAGGTGAAATATCAGTATCCAAAGAGAAGCACTTGCCAAAACCTGCTCAACAAGTTGCGGAAGTTACTGTCAGGACATCTGCCGAAAGAGCCAACCCTTTGTTGAAAACTACAAACAAACGAAGTTGTCCTCCTCCTGTAGCAGTTTCAGAGCCAAGTACATCCAATTGTGGGTGGGTTGACCGTGTGGCTGAAGACAACGCAACTCCATCTTGTTCCAAAGTGCACGAGAACAGCATAGAGTTTCAGTACAAGAATTTGATTGAGAACTGGCTTCCACCAAGTCTGCCAAGTGATAATCTAGATTTGGAGGATGATCAATCATGGCTGTTTCAAAGAAAACCTAAGCAAGCTCGAGTTGAGGAAAAAAACTTAGGCGGCGGTGACAAAACTTGTGGAAGCTGCAGTTCATTGTGGCAGCAGCCACGGGCACAATACCTTCCTGATGTTGAGTTGTATGCATTGCCCTACACAGTTCCTTTTTGAATCACATAACCGTGTGTATAGAAGATGTTTTAGCTGGATATACTGCTCAGGGAATTTTGTAGCTCTTCTCTGGGAACTGATGTAGTTTGAACAGGATTTAGGCGCGATGACAAAAATGTTCTTTTTTATTTTTTAGCTGCCAGTTGCTATCTTCAGAAATCCATTGTTCTACATCAATGAAAATGATCAATATAGTATTGGATATTTTCTTTCTCAA</gDNA_template>
            <first_frame> R  L  F  Q  Y  S  V  R  D  A  V  T  *  F  *  G  F  Q  K  F  L  I  L  R  F  N  H  K  *  S  F  V  S  R  Q  I  D  L  K  S  E  P  *  C  C  I  F  C  D  L  F  L  F  F  G  K  E  R  E  G  S  L  R  S  E  I  E  K  G  F  V  C  V  L  R  M  S  R  C  F  P  Y  P  P  P  G  Y  S  L  N  R  S  S  N  E  A  L  I  E  S  I  K  :  L  Q  K  E  R  E  V  A  K  A  E  K  K  D  R  K  R  E  K  K  E  K  K  R  E  E  K  K  A  K  K  E  K  S  N  L  G  F  G  K  A  T  H  E  S  K  G  K  Y  L  F  K  C  F  E  D  E  P  E  Q  L  E  R  S  N  L  T  E  E  H  E  P  A  V  C  S  Q  N  S  S  C  S  S  D  S  T  Q  N  S  N  K  R  K  R  P  T  S  P  S  P  S  R  G  G  I  Q  A  H   : G  S  I  I  R  I  R  L  S  K  K  G  V  Q  G  E  I  S  V  S  K  E  K  H  L  P  K  P  A  Q  Q  V  A  E  V  T  V  R  T  S  A  E  R  A  N  P  L  L  K  T  T  N  K  R  S  C  P  P  P  V  A  V  S  E  P  S  T  S  N  C  G  W  V  D  R  V  A  E  D  N  A  T  P  S  C  S  K  V  H  E  N  S  I  E  F  Q  Y  K  N  L  I  E  N  W  L  P  P  S  L  P  S  D  N  L  D  L  E  D  D  Q  S  W  L  F  Q  R  K  P  K  Q  A  R  V  E  E  K  N  L  G  G  G  D  K  T  C  G  S  C  S  S  L  W  Q  Q  P  R  A  Q  Y  L  P  D  V  E  L  Y  A  L  P  Y  T  V  P  F  *  I  T  *  P  C  V  *  K  M  F  *  L  D  I  L  L  R  E  F  C  S  S  S  L  G  T  D  V  V  *  T  G  F  R  R  D  D  K  N  V  L  F  Y  F  L  A  A  S  C  Y  L  Q  K  S  I  V  L  H  Q  *  K  *  S  I  *  Y  W  I  F  S  F  S  </first_frame>
            <second_frame>  A  S  F  N  I  L  *  E  T  P  *  P  N  S  R  V  S  R  N  F  *  F  C  D  S  I  T  S  N  R  L  Y  R  A  K  S  I  *  N  L  N  H  S  V  V  F  F  A  I  Y  F  C  F  L  V  K  K  G  R  E  V  S  D  L  K  S  K  R  D  L  S  V  Y  *  G  C  L  G  A  S  H  T  H  H  L  A  I  R  *  I  D  P  A  M  K  P  *  S  N  R  L  S :   S  K  R  R  G  R  *  L  K  Q  K  R  R  T  G  R  G  K  R  K  K  R  K  E  K  R  R  R  L  K  R  R  R  V  I  L  D  L  A  R  P  L  M  S  P  K  G  S  T  C  S  N  V  S  K  M  N  L  S  S  W  R  G  A  I  S  L  R  N  M  S  L  L  C  V  H  R  I  P  A  A  H  P  T  A  P  R  T  V  I  K  G  R  G  L  L  H  L  H  L  H  E  V  A  Y  R  R  M  :  V  A  L  S  E  L  D  C  L  K  R  V  C  K  V  K  Y  Q  Y  P  K  R  S  T  C  Q  N  L  L  N  K  L  R  K  L  L  S  G  H  L  P  K  E  P  T  L  C  *  K  L  Q  T  N  E  V  V  L  L  L  *  Q  F  Q  S  Q  V  H  P  I  V  G  G  L  T  V  W  L  K  T  T  Q  L  H  L  V  P  K  C  T  R  T  A  *  S  F  S  T  R  I  *  L  R  T  G  F  H  Q  V  C  Q  V  I  I  *  I  W  R  M  I  N  H  G  C  F  K  E  N  L  S  K  L  E  L  R  K  K  T  *  A  A  V  T  K  L  V  E  A  A  V  H  C  G  S  S  H  G  H  N  T  F  L  M  L  S  C  M  H  C  P  T  Q  F  L  F  E  S  H  N  R  V  Y  R  R  C  F  S  W  I  Y  C  S  G  N  F  V  A  L  L  W  E  L  M  *  F  E  Q  D  L  G  A  M  T  K  M  F  F  F  I  F  *  L  P  V  A  I  F  R  N  P  L  F  Y  I  N  E  N  D  Q  Y  S  I  G  Y  F  L  S  Q </second_frame>
            <third_frame>   P  L  S  I  F  C  E  R  R  R  N  L  I  L  G  F  P  E  I  F  D  S  A  I  Q  S  Q  V  I  V  C  I  A  P  N  R  S  E  I  *  T  I  V  L  Y  F  L  R  F  I  F  V  F  W  *  R  K  G  G  K  S  Q  I  *  N  R  K  G  I  C  L  C  I  E  D  V  S  V  L  P  I  P  T  T  W  L  F  A  E  *  I  Q  Q  *  S  L  D  R  I  D  *   : A  P  K  G  E  G  G  S  *  S  R  K  E  G  Q  E  E  G  K  E  R  K  E  K  R  R  E  E  G  *  K  G  E  E  *  S  W  I  W  Q  G  H  S  *  V  Q  R  E  V  L  V  Q  M  F  R  R  *  T  *  A  V  G  E  E  Q  S  H  *  G  T  *  A  C  C  V  F  T  E  F  Q  L  L  I  R  Q  H  P  E  Q  *  *  K  E  E  A  Y  F  T  F  T  F  T  R  W  H  T  G  A  W :   *  H  Y  Q  N  *  I  V  *  K  G  C  A  R  *  N  I  S  I  Q  R  E  A  L  A  K  T  C  S  T  S  C  G  S  Y  C  Q  D  I  C  R  K  S  Q  P  F  V  E  N  Y  K  Q  T  K  L  S  S  S  C  S  S  F  R  A  K  Y  I  Q  L  W  V  G  *  P  C  G  *  R  Q  R  N  S  I  L  F  Q  S  A  R  E  Q  H  R  V  S  V  Q  E  F  D  *  E  L  A  S  T  K  S  A  K  *  *  S  R  F  G  G  *  S  I  M  A  V  S  K  K  T  *  A  S  S  S  *  G  K  K  L  R  R  R  *  Q  N  L  W  K  L  Q  F  I  V  A  A  A  T  G  T  I  P  S  *  C  *  V  V  C  I  A  L  H  S  S  F  L  N  H  I  T  V  C  I  E  D  V  L  A  G  Y  T  A  Q  G  I  L  *  L  F  S  G  N  *  C  S  L  N  R  I  *  A  R  *  Q  K  C  S  F  L  F  F  S  C  Q  L  L  S  S  E  I  H  C  S  T  S  M  K  M  I  N  I  V  L  D  I  F  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79851" stop="80027"/>
                    <exon start="81319" stop="81643"/>
                    <exon start="81737" stop="82260"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CCIFCDLFLFFGKEREGSLRSEIEKGFVCVLRMSRCFPYPPPGYSLNRSSNEALIESIKLQKEREVAKAEKKDRKREKKEKKREEKKAKKEKSNLGFGKATHESKGKYLFKCFEDEPEQLERSNLTEEHEPAVCSQNSSCSSDSTQNSNKRKRPTSPSPSRGGIQAHGSIIRIRLSKKGVQGEISVSKEKHLPKPAQQVAEVTVRTSAERANPLLKTTNKRSCPPPVAVSEPSTSNCGWVDRVAEDNATPSCSKVHENSIEFQYKNLIENWLPPSLPSDNLDLEDDQSWLFQRKPKQARVEEKNLGGGDKTCGSCSSLWQQPRAQYLPDVELYALPYTVPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79709" e_stop="81391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="79709" e_stop="81391" e_length="1683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79709" stop="80293"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79722" stop="81391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U314107" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTATTCATCACCGCCTCTTTCAATATTCTGTGAGAGACGCCGTAACCTAATTCTAGGGTTTCCAGAAATTTTTGATTCTGCGATTCAATCACAAGTAATCGTTTGTATCGCGCCAAATCGATCTGAAATCTGAACCATAGTGTTGTATTTTTTGCGATTTATTTTTGTTTTTTGGTAAAGAAAGGGAGGGAAGTCTCAGATCTGAAATCGAAAAGGGATTTGTCTGTGTATTGAGGATGTCTCGGTGCTTCCCATACCCACCACCTGGCTATTCGCTGAATAGATCCAGCAATGAAGCCTTGATCGAATCGATTAAGGTTTGTTGAAACAAAGAGCACTTGAATTTATGTGTTTACGCTCTTGTTGCCTGATATAATCTAGCAGGGATCTATACTCTATGTAAATCTGTAAGGAAAATTTGTGGTTTTCGTGGGTTGTGCATTGGTTGTCAACTTGGATTTAGGGTTTGTAGGATTTGATTTGCGCTGGGATAAATTGACGTTTTTGTAAGCCTTTTGTGTGGATTTATTAATTATACCTGGTTAGAAATGAGGATTAGTATATACTTTTTTGTGCTCACCTTGTGGATTTAACAGTATTTAATGAATTCTACGAGAATAGGTTATGCGAAATCTGAGCAATTTGATATCATTCTAACCTTTGGTAAAGGAGAGGTGATAAGTTTAGGCAACTTTTAGGCTTTCAATTTGTTGTTTGTGGAGGAAATCGTAATGAGAAGTTAGAAGTGTATGCAAACATTGAGGTGTTAATGTATTGTTTGAGGAAGAAGTCCAGCAGAAATTGTAGGCAAAAACCTGTGCTTGAATAGATTTTCTAACTTGTAATATACTTCTTTTTAAAAAGTAATCACTATACATCAAAGATGTTTGAGAAAAGATTTTTGGGTAAAACGAGGTGCTCTTGGAAAGTTATATTTTGGCAGATTGCTCATACAAGAACTAACCATTGTGCATAATTGAAAAGCCTTTCGAAAAAATTGTATTTCACACTACTAGTCGCAGCTATAACTACTAATTGAAGCTGTGTAGCATTATGAATATGGATGCCCTCTGCTGAATTTTGGGTCCATACCATGTTCCTTTCCTGCTGTCTCTCTGTTTCTTTCCATGGTAGAAGGTTTAAATGAGGTTCCGTCTGTGAAATTGGTTTTCTTAAGATTCCCCTGTACCCTGTCACAACTATAGAAAGTTACTATTCGGTTTAGTCCACAATGTGAGTGTTCTGTAATATGTTATTCTTTTCTACCTGCATAATTAGTGTTCGCATCACTAATACTTTGTTTGTAAGTCTTGCTTGATTTAGCTTGGTTACCACTTTTATGCAACTTCATCTATAGACCAGGGGCCAGTTCTTTGTGTTAAGTAGAATTAGGTGACTGAGATTGTGCATTCTGTCATAATGATGGAAGTATATGTTGTGAACCCAACACATGTTTGGTGCCTACACCCATGTCTGTTTGATATGATAAAAGTTCAGTGAATGATCCTCAGAATCTGAGGGATCTTAATTGTTCGTTATCCTTCTGGTCATGCTGTATTAGTCTTCTATCTCCCTCTATTCTGAACTTGTTATCCTGGTGCTCTAAAGCTCCAAAAGGAGAGGGAGGTAGCTAAAGCAGAAAAGAAGGACAGGAAGAGGGAAAAGAAAGAAAAGAAAAGAG</gDNA_template>
            <first_frame> V  Y  S  S  P  P  L  S  I  F  C  E  R  R  R  N  L  I  L  G  F  P  E  I  F  D  S  A  I  Q  S  Q  V  I  V  C  I  A  P  N  R  S  E  I  *  T  I  V  L  Y  F  L  R  F  I  F  V  F  W  *  R  K  G  G  K  S  Q  I  *  N  R  K  G  I  C  L  C  I  E  D  V  S  V  L  P  I  P  T  T  W  L  F  A  E  *  I  Q  Q  *  S  L  D  R  I  D  *  G  L  L  K  Q  R  A  L  E  F  M  C  L  R  S  C  C  L  I  *  S  S  R  D  L  Y  S  M  *  I  C  K  E  N  L  W  F  S  W  V  V  H  W  L  S  T  W  I  *  G  L  *  D  L  I  C  A  G  I  N  *  R  F  C  K  P  F  V  W  I  Y  *  L  Y  L  V  R  N  E  D  *  Y  I  L  F  C  A  H  L  V  D  L  T  V  F  N  E  F  Y  E  N  R  L  C  E  I  *  A  I  *  Y  H  S  N  L  W  *  R  R  G  D  K  F  R  Q  L  L  G  F  Q  F  V  V  C  G  G  N  R  N  E  K  L  E  V  Y  A  N  I  E  V  L  M  Y  C  L  R  K  K  S  S  R  N  C  R  Q  K  P  V  L  E  *  I  F  *  L  V  I  Y  F  F  L  K  S  N  H  Y  T  S  K  M  F  E  K  R  F  L  G  K  T  R  C  S  W  K  V  I  F  W  Q  I  A  H  T  R  T  N  H  C  A  *  L  K  S  L  S  K  K  L  Y  F  T  L  L  V  A  A  I  T  T  N  *  S  C  V  A  L  *  I  W  M  P  S  A  E  F  W  V  H  T  M  F  L  S  C  C  L  S  V  S  F  H  G  R  R  F  K  *  G  S  V  C  E  I  G  F  L  K  I  P  L  Y  P  V  T  T  I  E  S  Y  Y  S  V  *  S  T  M  *  V  F  C  N  M  L  F  F  S  T  C  I  I  S  V  R  I  T  N  T  L  F  V  S  L  A  *  F  S  L  V  T  T  F  M  Q  L  H  L  *  T  R  G  Q  F  F  V  L  S  R  I  R  *  L  R  L  C  I  L  S  *  *  W  K  Y  M  L  *  T  Q  H  M  F  G  A  Y  T  H  V  C  L  I  *  *  K  F  S  E  *  S  S  E  S  E  G  S  *  L  F  V  I  L  L  V  M  L  Y  *  S  S  I  S  L  Y  S  E  L  V  I  L  V  L  *  S  S  K  R  R  G  R  *  L  K  Q  K  R  R  T  G  R  G  K  R  K  K  R  K  E </first_frame>
            <second_frame>  F  I  H  H  R  L  F  Q  Y  S  V  R  D  A  V  T  *  F  *  G  F  Q  K  F  L  I  L  R  F  N  H  K  *  S  F  V  S  R  Q  I  D  L  K  S  E  P  *  C  C  I  F  C  D  L  F  L  F  F  G  K  E  R  E  G  S  L  R  S  E  I  E  K  G  F  V  C  V  L  R  M  S  R  C  F  P  Y  P  P  P  G  Y  S  L  N  R  S  S  N  E  A  L  I  E  S  I  K  V  C  *  N  K  E  H  L  N  L  C  V  Y  A  L  V  A  *  Y  N  L  A  G  I  Y  T  L  C  K  S  V  R  K  I  C  G  F  R  G  L  C  I  G  C  Q  L  G  F  R  V  C  R  I  *  F  A  L  G  *  I  D  V  F  V  S  L  L  C  G  F  I  N  Y  T  W  L  E  M  R  I  S  I  Y  F  F  V  L  T  L  W  I  *  Q  Y  L  M  N  S  T  R  I  G  Y  A  K  S  E  Q  F  D  I  I  L  T  F  G  K  G  E  V  I  S  L  G  N  F  *  A  F  N  L  L  F  V  E  E  I  V  M  R  S  *  K  C  M  Q  T  L  R  C  *  C  I  V  *  G  R  S  P  A  E  I  V  G  K  N  L  C  L  N  R  F  S  N  L  *  Y  T  S  F  *  K  V  I  T  I  H  Q  R  C  L  R  K  D  F  W  V  K  R  G  A  L  G  K  L  Y  F  G  R  L  L  I  Q  E  L  T  I  V  H  N  *  K  A  F  R  K  N  C  I  S  H  Y  *  S  Q  L  *  L  L  I  E  A  V  *  H  Y  E  Y  G  C  P  L  L  N  F  G  S  I  P  C  S  F  P  A  V  S  L  F  L  S  M  V  E  G  L  N  E  V  P  S  V  K  L  V  F  L  R  F  P  C  T  L  S  Q  L  *  K  V  T  I  R  F  S  P  Q  C  E  C  S  V  I  C  Y  S  F  L  P  A  *  L  V  F  A  S  L  I  L  C  L  *  V  L  L  D  L  A  W  L  P  L  L  C  N  F  I  Y  R  P  G  A  S  S  L  C  *  V  E  L  G  D  *  D  C  A  F  C  H  N  D  G  S  I  C  C  E  P  N  T  C  L  V  P  T  P  M  S  V  *  Y  D  K  S  S  V  N  D  P  Q  N  L  R  D  L  N  C  S  L  S  F  W  S  C  C  I  S  L  L  S  P  S  I  L  N  L  L  S  W  C  S  K  A  P  K  G  E  G  G  S  *  S  R  K  E  G  Q  E  E  G  K  E  R  K  E  K   </second_frame>
            <third_frame>   L  F  I  T  A  S  F  N  I  L  *  E  T  P  *  P  N  S  R  V  S  R  N  F  *  F  C  D  S  I  T  S  N  R  L  Y  R  A  K  S  I  *  N  L  N  H  S  V  V  F  F  A  I  Y  F  C  F  L  V  K  K  G  R  E  V  S  D  L  K  S  K  R  D  L  S  V  Y  *  G  C  L  G  A  S  H  T  H  H  L  A  I  R  *  I  D  P  A  M  K  P  *  S  N  R  L  R  F  V  E  T  K  S  T  *  I  Y  V  F  T  L  L  L  P  D  I  I  *  Q  G  S  I  L  Y  V  N  L  *  G  K  F  V  V  F  V  G  C  A  L  V  V  N  L  D  L  G  F  V  G  F  D  L  R  W  D  K  L  T  F  L  *  A  F  C  V  D  L  L  I  I  P  G  *  K  *  G  L  V  Y  T  F  L  C  S  P  C  G  F  N  S  I  *  *  I  L  R  E  *  V  M  R  N  L  S  N  L  I  S  F  *  P  L  V  K  E  R  *  *  V  *  A  T  F  R  L  S  I  C  C  L  W  R  K  S  *  *  E  V  R  S  V  C  K  H  *  G  V  N  V  L  F  E  E  E  V  Q  Q  K  L  *  A  K  T  C  A  *  I  D  F  L  T  C  N  I  L  L  F  K  K  *  S  L  Y  I  K  D  V  *  E  K  I  F  G  *  N  E  V  L  L  E  S  Y  I  L  A  D  C  S  Y  K  N  *  P  L  C  I  I  E  K  P  F  E  K  I  V  F  H  T  T  S  R  S  Y  N  Y  *  L  K  L  C  S  I  M  N  M  D  A  L  C  *  I  L  G  P  Y  H  V  P  F  L  L  S  L  C  F  F  P  W  *  K  V  *  M  R  F  R  L  *  N  W  F  S  *  D  S  P  V  P  C  H  N  Y  R  K  L  L  F  G  L  V  H  N  V  S  V  L  *  Y  V  I  L  F  Y  L  H  N  *  C  S  H  H  *  Y  F  V  C  K  S  C  L  I  *  L  G  Y  H  F  Y  A  T  S  S  I  D  Q  G  P  V  L  C  V  K  *  N  *  V  T  E  I  V  H  S  V  I  M  M  E  V  Y  V  V  N  P  T  H  V  W  C  L  H  P  C  L  F  D  M  I  K  V  Q  *  M  I  L  R  I  *  G  I  L  I  V  R  Y  P  S  G  H  A  V  L  V  F  Y  L  P  L  F  *  T  C  Y  P  G  A  L  K  L  Q  K  E  R  E  V  A  K  A  E  K  K  D  R  K  R  E  K  K  E  K  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="109899" PGL_stop="110146"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109899" e_stop="110146"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="109899" e_stop="110146" e_length="248"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109899" stop="110146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335074" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTAATTCAAGCCAGTCTTACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACTGGATTTTCTTCTTCAAGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTCTTATGTATTTTTAGTTTCTTAGAATACTCTTAGTTTAGTAATTTGATTATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGAATGATAAGTTTTGAGTTATAGAAGTTGATTATTGATTTTTATTA</gDNA_template>
            <first_frame> S  N  S  S  Q  S  Y  Y  I  G  N  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  K  S  *  C  L  E  L  P  A  W  T  S  F  L  C  I  F  S  F  L  E  Y  S  *  F  S  N  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  M  I  S  F  E  L  *  K  L  I  I  D  F  Y   </first_frame>
            <second_frame>  V  I  Q  A  S  L  T  T  S  E  I  Q  G  E  L  M  L  L  A  W  T  G  F  S  S  S  S  L  D  A  L  N  F  R  H  G  L  A  S  Y  V  F  L  V  S  *  N  T  L  S  L  V  I  *  L  *  M  F  L  *  *  *  L  P  D  F  G  E  *  *  V  L  S  Y  R  S  *  L  L  I  F  I  </second_frame>
            <third_frame>   *  F  K  P  V  L  L  H  R  K  F  R  V  S  *  C  F  *  L  G  L  D  F  L  L  Q  V  L  M  P  *  T  S  G  M  D  *  L  L  M  Y  F  *  F  L  R  I  L  L  V  *  *  F  D  Y  R  C  S  C  D  D  D  F  Q  I  L  G  N  D  K  F  *  V  I  E  V  D  Y  *  F  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="111170" PGL_stop="110446"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111170" e_stop="110446"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="111170" e_stop="110446" e_length="725"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111170" stop="110446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313688" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAACTCTTCATTTTACTTCTCTCTTCTTAACATATACTTTAATTTTAAATTTGTGTGGTCTTCTGTTGTTAAGATTTTCTTAATCTTGTATGAGGGTTGTTATCTTTACAACTATTGAGCTTTGTTCACTTTGTTTGGTCATATTGTCACTTTGTTTTCTTGACTGTTTTTGCAATCTTTTACTATAAAGATAATATTAATCTTTAATTAAGATCTCATTTCATACATTTGTAATTGATGCTTTACATTCCATTTGGCTTTCTTATTTTCTTCCACTAATTCTCTATTCTATTCTAATACGACAAAATGTAGTGTTTATGCTATTCTGGTTGACATTACCTTGCTAAATGATCTATCTATGACATAGTTTTAAAAAAAAATAACATACTTTTGTTCATATTGGTGTTATTATATAAAATGTCTTATGTCAATCGTGAAATAGGAATTCAAAGATGAGGCTTAGTTGAAGCTTAATGTTGCCACATTTTTTATCATTTTGTGTTGTAAAAGTTATGTGATGCGATTCTGTGCTAACAGGTGATTTTTTATCAAAGATGATCCAGAAGATCCAAGCATGAAAGATGCATCTGTTTTTCTATACAGTATGTAAATGTATGTAATTAGTATTCCCACATATGAAAATGTTAAACTATGTAAGTATCTCACTTCGACATTCAGTAGTATGACATGCACATGAAAATATATTATGAACAAATTTGGCAGCT</gDNA_template>
            <first_frame> *  L  F  I  L  L  L  S  S  *  H  I  L  *  F  *  I  C  V  V  F  C  C  *  D  F  L  N  L  V  *  G  L  L  S  L  Q  L  L  S  F  V  H  F  V  W  S  Y  C  H  F  V  F  L  T  V  F  A  I  F  Y  Y  K  D  N  I  N  L  *  L  R  S  H  F  I  H  L  *  L  M  L  Y  I  P  F  G  F  L  I  F  F  H  *  F  S  I  L  F  *  Y  D  K  M  *  C  L  C  Y  S  G  *  H  Y  L  A  K  *  S  I  Y  D  I  V  L  K  K  N  N  I  L  L  F  I  L  V  L  L  Y  K  M  S  Y  V  N  R  E  I  G  I  Q  R  *  G  L  V  E  A  *  C  C  H  I  F  Y  H  F  V  L  *  K  L  C  D  A  I  L  C  *  Q  V  I  F  Y  Q  R  *  S  R  R  S  K  H  E  R  C  I  C  F  S  I  Q  Y  V  N  V  C  N  *  Y  S  H  I  *  K  C  *  T  M  *  V  S  H  F  D  I  Q  *  Y  D  M  H  M  K  I  Y  Y  E  Q  I  W  Q   </first_frame>
            <second_frame>  N  S  S  F  Y  F  S  L  L  N  I  Y  F  N  F  K  F  V  W  S  S  V  V  K  I  F  L  I  L  Y  E  G  C  Y  L  Y  N  Y  *  A  L  F  T  L  F  G  H  I  V  T  L  F  S  *  L  F  L  Q  S  F  T  I  K  I  I  L  I  F  N  *  D  L  I  S  Y  I  C  N  *  C  F  T  F  H  L  A  F  L  F  S  S  T  N  S  L  F  Y  S  N  T  T  K  C  S  V  Y  A  I  L  V  D  I  T  L  L  N  D  L  S  M  T  *  F  *  K  K  I  T  Y  F  C  S  Y  W  C  Y  Y  I  K  C  L  M  S  I  V  K  *  E  F  K  D  E  A  *  L  K  L  N  V  A  T  F  F  I  I  L  C  C  K  S  Y  V  M  R  F  C  A  N  R  *  F  F  I  K  D  D  P  E  D  P  S  M  K  D  A  S  V  F  L  Y  S  M  *  M  Y  V  I  S  I  P  T  Y  E  N  V  K  L  C  K  Y  L  T  S  T  F  S  S  M  T  C  T  *  K  Y  I  M  N  K  F  G  S  </second_frame>
            <third_frame>   T  L  H  F  T  S  L  F  L  T  Y  T  L  I  L  N  L  C  G  L  L  L  L  R  F  S  *  S  C  M  R  V  V  I  F  T  T  I  E  L  C  S  L  C  L  V  I  L  S  L  C  F  L  D  C  F  C  N  L  L  L  *  R  *  Y  *  S  L  I  K  I  S  F  H  T  F  V  I  D  A  L  H  S  I  W  L  S  Y  F  L  P  L  I  L  Y  S  I  L  I  R  Q  N  V  V  F  M  L  F  W  L  T  L  P  C  *  M  I  Y  L  *  H  S  F  K  K  K  *  H  T  F  V  H  I  G  V  I  I  *  N  V  L  C  Q  S  *  N  R  N  S  K  M  R  L  S  *  S  L  M  L  P  H  F  L  S  F  C  V  V  K  V  M  *  C  D  S  V  L  T  G  D  F  L  S  K  M  I  Q  K  I  Q  A  *  K  M  H  L  F  F  Y  T  V  C  K  C  M  *  L  V  F  P  H  M  K  M  L  N  Y  V  S  I  S  L  R  H  S  V  V  *  H  A  H  E  N  I  L  *  T  N  L  A  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110G11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="112821" PGL_stop="111841"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112821" e_stop="111841"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="112821" e_stop="111841" e_length="981"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112821" stop="111841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325542" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGTTTATAATTTCTTTTTCTTTCTAGATTAATATTTAAATTTAAAATAAAAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTACATAAGATGTACTACAACAGTAAAAATGATACGTGTCTTAAAAAAATTATATATTGTTTTATACACTAACAAATGGAGTGATGTAGCTCCTGCTTTTTATGCTTTTAGCAGTAGTGTAATTTTCATTTTTTTGACTTTTAGCAAAACTTTTCCTCCTTTTTTTAATTTTATTTTCTTTCTACATTAATATTTAAATTTAAAATAAATTTTTTTAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCTCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTAGTATAATAAATAAATAAAAATATGAAACATAGAGATATATATGTACAAGAAGTGTTTATAATTTCTTTTTCTTTGTAGATTAATGTTTAAATTTAAAATAAACAAAAGAAAAGATAGGGGAAGTGGTTATAATAATTATTTTTTTATATATTTTACTCTTAATATTAAATACTTATTCGATAAATTATTTTAAGACCTAATACTCTACTAAACATCATCAATAGAAATAGTATAGTAAAATACGTTAATAATTATTTTTTAATTGTGTATCAAATTAAATAATAACTAATAAAAATTAACGAAAGTAATATATGATTAACTTGACACATTATGAGTTTAATAATGATTAAAGAAGACAGGTGTAAATTGCTTTTCACTTTTTGTTTTCTTTTTTCTTAGGAATTTCACTTCCTACATTACACGTAGCCCCTCCTTTTTATTTTTTTATTTTCTTTCTACATTAATATTTAAATTTAGAATAAAAACTTTCAATTTCTGATATGTTCATTGATTTTGTCTGAATCACAAATATCGCAAACAAAAAAAAAATATGAATAATAATTTATAATTATAATTTATATAATAAATAAAAAA</gDNA_template>
            <first_frame> S  V  Y  N  F  F  F  F  L  D  *  Y  L  N  L  K  *  K  K  K  R  *  G  K  W  L  *  *  L  H  K  M  Y  Y  N  S  K  N  D  T  C  L  K  K  I  I  Y  C  F  I  H  *  Q  M  E  *  C  S  S  C  F  L  C  F  *  Q  *  C  N  F  H  F  F  D  F  *  Q  N  F  S  S  F  F  *  F  Y  F  L  S  T  L  I  F  K  F  K  I  N  F  F  N  F  *  Y  V  H  *  F  C  L  N  H  K  Y  L  K  Q  K  K  N  M  N  N  N  L  *  L  *  L  V  *  *  I  N  K  N  M  K  H  R  D  I  Y  V  Q  E  V  F  I  I  S  F  S  L  *  I  N  V  *  I  *  N  K  Q  K  K  R  *  G  K  W  L  *  *  L  F  F  Y  I  F  Y  S  *  Y  *  I  L  I  R  *  I  I  L  R  P  N  T  L  L  N  I  I  N  R  N  S  I  V  K  Y  V  N  N  Y  F  L  I  V  Y  Q  I  K  *  *  L  I  K  I  N  E  S  N  I  *  L  T  *  H  I  M  S  L  I  M  I  K  E  D  R  C  K  L  L  F  T  F  C  F  L  F  S  *  E  F  H  F  L  H  Y  T  *  P  L  L  F  I  F  L  F  S  F  Y  I  N  I  *  I  *  N  K  N  F  Q  F  L  I  C  S  L  I  L  S  E  S  Q  I  S  Q  T  K  K  K  Y  E  *  *  F  I  I  I  I  Y  I  I  N  K  K </first_frame>
            <second_frame>  V  F  I  I  S  F  S  F  *  I  N  I  *  I  *  N  K  K  R  K  D  R  G  S  G  Y  N  N  Y  I  R  C  T  T  T  V  K  M  I  R  V  L  K  K  L  Y  I  V  L  Y  T  N  K  W  S  D  V  A  P  A  F  Y  A  F  S  S  S  V  I  F  I  F  L  T  F  S  K  T  F  P  P  F  F  N  F  I  F  F  L  H  *  Y  L  N  L  K  *  I  F  L  I  S  D  M  F  I  D  F  V  *  I  T  N  I  S  N  K  K  K  I  *  I  I  I  Y  N  Y  N  *  Y  N  K  *  I  K  I  *  N  I  E  I  Y  M  Y  K  K  C  L  *  F  L  F  L  C  R  L  M  F  K  F  K  I  N  K  R  K  D  R  G  S  G  Y  N  N  Y  F  F  I  Y  F  T  L  N  I  K  Y  L  F  D  K  L  F  *  D  L  I  L  Y  *  T  S  S  I  E  I  V  *  *  N  T  L  I  I  I  F  *  L  C  I  K  L  N  N  N  *  *  K  L  T  K  V  I  Y  D  *  L  D  T  L  *  V  *  *  *  L  K  K  T  G  V  N  C  F  S  L  F  V  F  F  F  L  R  N  F  T  S  Y  I  T  R  S  P  S  F  L  F  F  Y  F  L  S  T  L  I  F  K  F  R  I  K  T  F  N  F  *  Y  V  H  *  F  C  L  N  H  K  Y  R  K  Q  K  K  N  M  N  N  N  L  *  L  *  F  I  *  *  I  K   </second_frame>
            <third_frame>   C  L  *  F  L  F  L  S  R  L  I  F  K  F  K  I  K  K  E  K  I  G  E  V  V  I  I  I  T  *  D  V  L  Q  Q  *  K  *  Y  V  S  *  K  N  Y  I  L  F  Y  T  L  T  N  G  V  M  *  L  L  L  F  M  L  L  A  V  V  *  F  S  F  F  *  L  L  A  K  L  F  L  L  F  L  I  L  F  S  F  Y  I  N  I  *  I  *  N  K  F  F  *  F  L  I  C  S  L  I  L  S  E  S  Q  I  S  Q  T  K  K  K  Y  E  *  *  F  I  I  I  I  S  I  I  N  K  *  K  Y  E  T  *  R  Y  I  C  T  R  S  V  Y  N  F  F  F  F  V  D  *  C  L  N  L  K  *  T  K  E  K  I  G  E  V  V  I  I  I  I  F  L  Y  I  L  L  L  I  L  N  T  Y  S  I  N  Y  F  K  T  *  Y  S  T  K  H  H  Q  *  K  *  Y  S  K  I  R  *  *  L  F  F  N  C  V  S  N  *  I  I  T  N  K  N  *  R  K  *  Y  M  I  N  L  T  H  Y  E  F  N  N  D  *  R  R  Q  V  *  I  A  F  H  F  L  F  S  F  F  L  G  I  S  L  P  T  L  H  V  A  P  P  F  Y  F  F  I  F  F  L  H  *  Y  L  N  L  E  *  K  L  S  I  S  D  M  F  I  D  F  V  *  I  T  N  I  A  N  K  K  K  I  *  I  I  I  Y  N  Y  N  L  Y  N  K  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112775" stop="112548"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKKRKDRGSGYNNYIRCTTTVKMIRVLKKLYIVLYTNKWSDVAPAFYAFSSSVIFIFLTFSKTFPPFFNFIFFLH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="117575" PGL_stop="125306"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117575" e_stop="117621"/>
            <exon e_start="120411" e_stop="120455"/>
            <exon e_start="122061" e_stop="122184"/>
            <exon e_start="122609" e_stop="122787"/>
            <exon e_start="123552" e_stop="123669"/>
            <exon e_start="125198" e_stop="125306"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.992" e_score="0.992"/>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117575" e_stop="117621" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.974">
            <gDNA_intron_boundary i_start="117622" i_stop="120410" i_length="2789"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="120411" e_stop="120455" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="120456" i_stop="122060" i_length="1605"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="122061" e_stop="122184" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.992">
            <gDNA_intron_boundary i_start="122185" i_stop="122608" i_length="424"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="122609" e_stop="122787" e_length="179"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="122788" i_stop="123551" i_length="764"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="123552" e_stop="123669" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="123670" i_stop="125197" i_length="1528"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="125198" e_stop="125306" e_length="109"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117575" stop="117621"/>
              <exon start="120411" stop="120455"/>
              <exon start="122061" stop="122184"/>
              <exon start="122609" stop="122787"/>
              <exon start="123552" stop="123669"/>
              <exon start="125198" stop="125306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCCTCTGTGTTTCTGTTGGTTGTTTGCTGTATTGGGTTCTCTCT : ATTTCTCCAGCTGAGGAAACAAAGGAAACACTCTTCACTGACAAA : GGTCACAGAGAACAAAGGAACACTTCATTTACTTTGAGGAGCACATCCAAATCTGGATCTCTCATCTCCGTTACAGTAGATGGAAGAAGTTATTCGAATTGCTAACATTGAACCCCAAGAAGAC : AAAGGTGAAGATCAAGGACGTCCAAGGGTAGAATAGTAAATTTAACCTGACAAGTACACACTCTCATGATTTTAGAACGCTCCATCTTACTCATTAGCACAGAATAGACGCAATATTTTCAACACGAGAATCAGTTCTTCCATTTCTCTTGCTCCAACTCCAACAGCAACGAATTTCAG : GAGCTGGTGTCTTCATTTTATATTTGGTACGGTATTCGAATAATTTATCAAGAGCTTGACGCATGTAGAGAATGCCTAGGGGATCCACAGACTCTGGACAACAGATGCAGTTATTCTA : GTGTACCAGGAACCGATATAAAGTTGAAGGAGATCGGTCATGAACCATGTAGGCATTGAAGCAGCTGCCAATGATTTCAATGGTAACCGGTCTCTCTCAAGTCTGGATG</gDNA_template>
            <first_frame> F  S  S  V  F  L  L  V  V  C  C  I  G  F  S  L :   F  L  Q  L  R  K  Q  R  K  H  S  S  L  T  K :   V  T  E  N  K  G  T  L  H  L  L  *  G  A  H  P  N  L  D  L  S  S  P  L  Q  *  M  E  E  V  I  R  I  A  N  I  E  P  Q  E  D  :  K  G  E  D  Q  G  R  P  R  V  E  *  *  I  *  P  D  K  Y  T  L  S  *  F  *  N  A  P  S  Y  S  L  A  Q  N  R  R  N  I  F  N  T  R  I  S  S  S  I  S  L  A  P  T  P  T  A  T  N  F  R :   S  W  C  L  H  F  I  F  G  T  V  F  E  *  F  I  K  S  L  T  H  V  E  N  A  *  G  I  H  R  L  W  T  T  D  A  V  I  L  :  V  Y  Q  E  P  I  *  S  *  R  R  S  V  M  N  H  V  G  I  E  A  A  A  N  D  F  N  G  N  R  S  L  S  S  L  D  </first_frame>
            <second_frame>  S  P  L  C  F  C  W  L  F  A  V  L  G  S  L   : Y  F  S  S  *  G  N  K  G  N  T  L  H  *  Q   : R  S  Q  R  T  K  E  H  F  I  Y  F  E  E  H  I  Q  I  W  I  S  H  L  R  Y  S  R  W  K  K  L  F  E  L  L  T  L  N  P  K  K  T :   K  V  K  I  K  D  V  Q  G  *  N  S  K  F  N  L  T  S  T  H  S  H  D  F  R  T  L  H  L  T  H  *  H  R  I  D  A  I  F  S  T  R  E  S  V  L  P  F  L  L  L  Q  L  Q  Q  Q  R  I  S   : G  A  G  V  F  I  L  Y  L  V  R  Y  S  N  N  L  S  R  A  *  R  M  *  R  M  P  R  G  S  T  D  S  G  Q  Q  M  Q  L  F  * :   C  T  R  N  R  Y  K  V  E  G  D  R  S  *  T  M  *  A  L  K  Q  L  P  M  I  S  M  V  T  G  L  S  Q  V  W  M </second_frame>
            <third_frame>   L  L  C  V  S  V  G  C  L  L  Y  W  V  L  S  :  I  S  P  A  E  E  T  K  E  T  L  F  T  D  K  :  G  H  R  E  Q  R  N  T  S  F  T  L  R  S  T  S  K  S  G  S  L  I  S  V  T  V  D  G  R  S  Y  S  N  C  *  H  *  T  P  R  R   : Q  R  *  R  S  R  T  S  K  G  R  I  V  N  L  T  *  Q  V  H  T  L  M  I  L  E  R  S  I  L  L  I  S  T  E  *  T  Q  Y  F  Q  H  E  N  Q  F  F  H  F  S  C  S  N  S  N  S  N  E  F  Q  :  E  L  V  S  S  F  Y  I  W  Y  G  I  R  I  I  Y  Q  E  L  D  A  C  R  E  C  L  G  D  P  Q  T  L  D  N  R  C  S  Y  S   : S  V  P  G  T  D  I  K  L  K  E  I  G  H  E  P  C  R  H  *  S  S  C  Q  *  F  Q  W  *  P  V  S  L  K  S  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="122716" stop="122787"/>
                    <exon start="123552" stop="123669"/>
                    <exon start="125198" stop="125256"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQYFQHENQFFHFSCSNSNSNEFQELVSSFYIWYGIRIIYQELDACRECLGDPQTLDNRCSYSSVPGTDIKLKEIGHEPCRH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110G11.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117577" stop="117621"/>
                    <exon start="120411" stop="120455"/>
                    <exon start="122061" stop="122165"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLCVSVGCLLYWVLSISPAEETKETLFTDKGHREQRNTSFTLRSTSKSGSLISVTVDGRSYSNC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 53 chains have been computed
$ 
$ memory statistics:
$ 271080 bytes spliced alignments in total
$ 31 spliced alignments have been stored
$ 8744 bytes was the average size of a spliced alignment
$ 29576 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1556 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 67 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:31:55
-->
