<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:53:29"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339546" ref_strand="+" ref_description="SGN-U339546        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: hypothetical(evalue: 1e-06, score=56.6)">
      <seq>gagaactagtctcaggtntttttggttttttttttttttttttttttgggacaggaaaaaatgatgatgaattgataactagatatgagtcataatacttgttagtagttgttctcatgagatattactacatttgaaaagttcacattgatgtatttaagccctaagcataatagtcaagtcttaccatttaagatatccctgtctttgttcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="+" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="10284" stop="21645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20252" g_stop="20290" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20291" i_stop="21167" i_length="877">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21168" g_stop="21345" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="217" r_length="178" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="+" ref_id="SGN-U339546" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20252" e_stop="20290"/>
          <exon e_start="21168" e_stop="21345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATACCGTCTCTCACTTATTATTATTATTTTTTTTTATTATAAGTGTCACCTAGTGTGGACTTTTGGGGCACCACTAAAGGAGTATTTGTTGTTATTTGTAAGACACAACAATTGTTGCTTTTAGAGCTCTTAGCAATAATATAGTTTGACAAAACTTAGGGTAAAACTTGTCTCCTTTAGAAAACTCACATTCTTTATCAAAGAAGTCTACCTCCAATTGGGAACCTCTAAATTATTAAATCACAAGATAAGAAAACAAAATAATAATAATAATAATAATATCATAAACATATCTCTTTAGTATTGGTCCCACATTGTGTTCTCTCACTCACCCAAACATGTATGTTTCATTGTGGCTTCATTCCAAATCAATGATAAACTTAACAAAGACTATTAAAGATGAACCAAATACCTTTTAGGCCACTACAAGCTGAGATAGAAAGGAACAAAAGATTAGTTTATTGGGAAAAAAAAGGACGAGATAACAAGGCTAATTGCAAACACGTGTAGGATTAAGCTTAAGAAGATGTGGTTTATTAATCTCACAAGTACTTTAATTGCACGTAGCTTTGCTTGAAAAAGAAAAAGAAGCAATTGTGAAGCTTAGTGCGTTTGACATTTCTATGTTATTGAAAGCTAAGAATTTTGACTCATTTTTCCTCTTTAGTTTTAGACTAAAAAGGATTGGTCGGTTTTCAGCTGGGGCTTTAATGATAATGCCTTATAGACTATAGTATAAAATTAGAAAGATAACAAATTAGAGGTGGAGAAAGACAAAGCAGAAAGGGGCAAAAAAGGAGTCCAACAACACATGAGTACAAGGTAAAAAGAGAAAAGATACTAAACTTGTATACAAACCAGAGTCTTTAATGATTTAGTGGGTTTTATAGAGGTCTAACATCTAGAATTTTAAAGTTGCAAATTGGACAGGAAAAAATGATGATGAATTGATAACTAGATATGAGTCATAATACTTGTTAGTAGTTGTTCTCATGAGATATTACTACATCTGAAAAGTTCACATTGATGTATCTAAGCACTAAGCATAATAGTCAAGTCTTACCATTTAAGATATCCCTGTCTTTGTTCAAAA</genome_strand>
        <mrna_strand>GAGAACTAGTCTCAGGTNTTTTTGGTTTTTTTTTTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTGGGACAGGAAAAAATGATGATGAATTGATAACTAGATATGAGTCATAATACTTGTTAGTAGTTGTTCTCATGAGATATTACTACATTTGAAAAGTTCACATTGATGTATTTAAGCCCTAAGCATAATAGTCAAGTCTTACCATTTAAGATATCCCTGTCTTTGTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331925" ref_strand="+" ref_description="SGN-U331925        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>taggaatcaaagatttgaacaaattgtgaccattgtagtttaagtggtattttcatgtggaggttttcagcatgttccttggaccacaaaagggaaatctaagccattattgaggaactctagaaataaagttttacttgcacttaacacggtaaataattgaacaattgtctcaaggctatagctgataatcagccatgttatttcttattactctccttgtgttataacgataacctcataacgataacagcttctaacataaactaatcaccttctttctttaatgaataactcaagacagtttcccggcaaaagaaggtgtttaatctagcactagtagaatccatgcccaacagacgatacgggcagtagttttatttatgcttttagataagtttagcagttttcctcaacgaaattatatataccaactgatactgatacatactgttaggagaaattaacatgtactaatgcagtcctttgcatgctatttcatcttcaacttcaatgaacctttatcttaatatataacccaaaatagtttctacattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="+" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="23351" stop="24507"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23651" g_stop="24208" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="+" ref_id="SGN-U331925" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23651" e_stop="24208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAATCAAAGATTAGAACAAATTGTGACCATTGTAGTTTAAGTGGTATTTTCATGTTGAGGTTTTCAGCATGTTCCTTGGACCACAAAAGGGAAATCTAAGCCATTATTGAGGAACTCTAGAAATAAAGTTTTACTTGCACTTAACACGGTAAATAATTGAACAATTGTCTCAAGGCTATAGCTGATAATCAGCCATGTTATTTCTTATTACTCTCCTTGTGTTATAACGATAACCTCATAACGATAACAGCTTCTAACATAAACTAATCACCTTCTTTCTTTAATGAATAACTCAAGACAGTTTCCCGGCAAAAGAAGGTGTTTAATCTAGCACTAGTAGAATCCATGCCCAACAGACGATACGGGCAGTAGTTTTATTTATGCTTTTAGATAAGTTTAGCAGTTTTCCTCAACGAAATTATATATACCAACTGATACTGATACATACTGTTAGGAGAAATTAACATGTACTAATGCAGTCCTTTGCATGCTATTTCATCTTCAACTTCAATGAACCTTTATCTTAATATATAACCCAAAATAGTTTCTACATTT</genome_strand>
        <mrna_strand>TAGGAATCAAAGATTTGAACAAATTGTGACCATTGTAGTTTAAGTGGTATTTTCATGTGGAGGTTTTCAGCATGTTCCTTGGACCACAAAAGGGAAATCTAAGCCATTATTGAGGAACTCTAGAAATAAAGTTTTACTTGCACTTAACACGGTAAATAATTGAACAATTGTCTCAAGGCTATAGCTGATAATCAGCCATGTTATTTCTTATTACTCTCCTTGTGTTATAACGATAACCTCATAACGATAACAGCTTCTAACATAAACTAATCACCTTCTTTCTTTAATGAATAACTCAAGACAGTTTCCCGGCAAAAGAAGGTGTTTAATCTAGCACTAGTAGAATCCATGCCCAACAGACGATACGGGCAGTAGTTTTATTTATGCTTTTAGATAAGTTTAGCAGTTTTCCTCAACGAAATTATATATACCAACTGATACTGATACATACTGTTAGGAGAAATTAACATGTACTAATGCAGTCCTTTGCATGCTATTTCATCTTCAACTTCAATGAACCTTTATCTTAATATATAACCCAAAATAGTTTCTACATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327969" ref_strand="+" ref_description="SGN-U327969        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:At5g46410.1); similar to P0003E08.14 [Oryza sativa (japonica cultivar-group)] (GB:NP_916794.1); similar to Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding Protein With Associated Ligand-like [Oryza sativa (japonica cultivar-group)] (GB:BAD72353.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274) | chr4:10046587-10049405 REVERSE | Aliases: F15J5.110, F15J5_110(evalue: 1e-09, score=42.7) genbank/nr: putative(evalue: 8e-09, score=45.8)">
      <seq>gtgaattcttcgtggaagtatttctcaggagaagaagttgcagttgccagcctttccaactttattcattggaggaaaccatgatacattggggagctgttttcagattgcaagtgaataatggaattcctatgatcaagagttggtgtgatgacccccatcagactctgcacttacttcagaacttccatttctagtgacgctggctgatgctgatgatgtctgtcctatcattgctaagaaattcagtaacaagggacacgagtcccttgtctcttcctagtagttcctctaactgtccctcatttcttacttcatgttagacaatttatccttcattacttgctcattattatccctcattgagccttgtataattgtttttgcattaagagttaggtcccaaggtcgatttccaattaagtcagcttttgctgctcatttttttctctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="-" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="28233" stop="24249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27933" g_stop="27849" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27848" i_stop="26638" i_length="1211">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26637" g_stop="26625" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="98" r_length="13" r_score="0.692"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26624" i_stop="24906" i_length="1719">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24905" g_stop="24552" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="452" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="453" polyA_stop="466"/>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="-" ref_id="SGN-U327969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27933" e_stop="27849"/>
          <exon e_start="26637" e_stop="26625"/>
          <exon e_start="24905" e_stop="24552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATTCTTCGTGGAAGTATTTCTCAGGAGAAGAAGTTGCAGTTGCCAGCCTTTCCAACTTTATTCATTGGAGGAAACCATGATGCATCCAATTACATTGGGGAGCTGTGAGTTGATTTTTATGTATTATATCTGTTCTCAATGTTGCATAGATACCTAACTTTGGTTGTTTACATTCTATTTCTCTATCACTATCAGTCTGTTGATCTATAGGTTATTAAATATTTGTTGTTGGTGGACCTCAGCTTCTAATTTTCTTTGGCTGGGGTCTGATGTGTCAGTCTTCCTAAAATCTGTTCATCGTTGTAACCTAATTGGCTGGTCACATTTGGCTTGTTAAGAAAATCTGCTGCACTTGAACTTGTTTAAGTTATTAATCAGTCCGATCTCTATATTTAGCAGTTAACTAATTCCAGAGTTGTTTGTTTGATAATTCTTGACTGTTTTTTGAGTGATGAGTGTTGACAATGGTAACAAAAATGAAGATGTGGGAAAAACACATTGCAATGATCTTGGATGAGTTGATTGATCCTTTTTAGTGGTGCTGGTGTATTCGTTGTGCTTTATTGTTTGTCGAACAGATTCATTTATTTCTTTTTATTTACTCACTGAATTGCTTCAAATGTTAACATATGGGAATATAAAGTAAAGGACTAATTGTTTACTAATCTATGATAGAATGCTATCTTTTCAAAAAAAGTCATTTCTGAATCAGGACATTATTTTCAATCACTCAGACAACTATTGCTCAATGCTAAATTGTTGAGTTTAGTATATGAATTTCTTGTTTTCATGTTGATCCATTCAGGTCCATTTTATTGTAATACATAATAATTTGTCTTTAAGAAAGATGATGGTTTCTCTACGAGTGGATGTTCTCTAAATCGTACTCTTACTCCTGCACGTGGACTACATCACAACAAGCCTTTAACAAGGATAAAAAAGCCCATGAAATATTGGATCTATCGTAAATGTTAAAAGGAACAACTAAGTCTTAATCCAACTAGTGGTGTGGCATATATGTATGCTTTGCTTCCATTAAGCTAAAACAAAAAGTCCTTTTGAGATAACTTTTATATGATTTTGGGTCTAACTTTTCCGTTTTTATTAAAATGACTATATCATCTCATATGAGCATATAAAAATTCTTCGTGGACATGACCATACCATCTCATATGACGTCATCATTTTAAACTCTGCATGCTGCTGCACCTCTTATGGGATGTGATAATTTATAATCTTAGGATATGAATGCATATCCATCTTATTCGCATTCATATGAGTCTTGAGTCTAGACAATGTGGATATGTTATTTTTGGAGACCCAACATTTGTTGCCATATAATGTTGTTGTTCTTACAACCATTTTACAGGACCTAACTACAGCTCTAACTCCAAACGCACTACATATTTTCCCCTAATAAGTGCAAAATTCCCATACTTATCCATCCTACCAAGAAAACTACTATAAGATTGATACATTTGTTTTTGAGTCTATGTATCTGCAGTCTCTTCCACTCAAAACATGCCTAGTTCCTTTTCAACCATGTTGTCTTCAGTATGCAATTTTGAATAATCTTGCATATCAGCTTCAAGCCCCCTTTAACTTTTTAAACTGCCAAACTTCCAAAGGGCTGCTGATCTTCTGTGGTAATACCAAATATATGCCCATGATGTTAAAGAAAAGTTCCCAGCATTGTCTTGAGAAGCTGCTATGGAAGAATACCTGATCAACTGTTTCCTGCTCAGAATTACATAAATAACATTTGCTGCACAGTGAATAACCTCTCCTTTGCAAGTTGTTCTTTGGTCATTCCAGGAAGGAGGTCTTATTCTTGGGAAGGACTGAAATAGAAAGCAAAGTAAAGTAAATATTCTACAAGCAGAACAAAAAACTAGAAGGTGTTTTTTTTTAAAGAATACTATTTAGCACCACAAAACAAAAACCAGAAAGTTAGAAACAGTGTCACGTTGTGGAGTGAAAAATATTAAGGTATCTAGGTCAGTTGTTAGACACATTTGCAAGTGTCATAGTTGAACTCATATACAAGTCACACTTGCAGCCTAATTAAATGTGGCATTTGTATTTCTATTTAACACATAAAAAACAATCATAGTTTTTATTTTTGGCAAGAAGAAGTACAAAATTCACTTGGAAGAACGTATCTGAGAGAGAATTCTTACCACCAAAAGACCCACCAAAGATTGATTCAAATATGTCAAAGTGATTGTGTGAACCGCCGCTTAGGAAAAAAATGAGAATGTCTCACTGGAGGCACATATTGACTCCAATAAGTAAACTCTCGTCTTGCATATTGGTTTCATGTTTCTAGAAACACTTGTCTATTCTACTTTGGAGCACAGTGATGATGCATACTTTGCACTTCCTGTCTCCTTCAGCATGAAAGAACACGTTGTGTATATGAAGCAGAGGCCTCATCTCAAGACATTCATGGAGAAAGTTGCAGATATGTTTGAAATCGTGATTTTTACTGCCAGTTATAGCATCTACGTGAGTCTACTGTCGGATATACTGGATCCAGATGGAAAGCTAATTTCAACTCTTATCATGAATTATGCATATTCTCAGGTGGTAGTTACACTAAAGATTTGACAATATTAGGTGCTGATCATTTAGGCATATATCTTAATGATTTTAATAATCCTTGTAGAAGCATCCATTTGTTTTAGGATTTCCTTGTTTTCTTGGATGTTGGACTGGGGGATGGGAGATTAAGTACCTGACTAATCTGCTCATGTGATTTCAGGGGGAGGGGGGACGGAAATAGAGATTCTATGTGGTATCTTAGAGTGTCATGCAACTTATTTGTATGTTGACAAGCATATTCACATTATTTGTTAAAATTATAACATTTCAGAAGGATGTCGTTTTCCCTTGAACCAGAAATGTGTGAACACATGGTCTTCTTAGTTAATCATAAAATGTCCCTAGAGAAGTATCTATTTTTCATTGAAATCCAGGCATTTTGTTTTTGCACCTGAAAGCATCTTTCTTTCTTGATTTCAGGTTTTCAGATTGCAAGTGAATAATGGAATTCCTATGATCAAGAGTTGGTGTGATGACCCCCATCAGACTCTGCACTTACTTCAGAACTTCCATTTCTAGTGACGCTGGCTGATGCTGATGATGTCTGTCCTATCATTGCTAAGAAATTCAGTAACAAGGGACACGAGTCCCTTGTCTCTTCCTAGTAGTTCCTCTAACTGTCCCTCATTTCTTACTTCATGTTAGACAATTTATCCTTCATTACTTGCTCATTATTATCCCTCATTGAGCCTTGTATAATTGTTTTTGCATTAAGAGTTAGGTCCCAAGGTCGATTTCCAATTAAGTCAGCTTTTGCTGCTCATTTTTTTCTCT</genome_strand>
        <mrna_strand>GTGAATTCTTCGTGGAAGTATTTCTCAGGAGAAGAAGTTGCAGTTGCCAGCCTTTCCAACTTTATTCATTGGAGGAAACCATGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGGGGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTCAGATTGCAAGTGAATAATGGAATTCCTATGATCAAGAGTTGGTGTGATGACCCCCATCAGACTCTGCACTTACTTCAGAACTTCCATTTCTAGTGACGCTGGCTGATGCTGATGATGTCTGTCCTATCATTGCTAAGAAATTCAGTAACAAGGGACACGAGTCCCTTGTCTCTTCCTAGTAGTTCCTCTAACTGTCCCTCATTTCTTACTTCATGTTAGACAATTTATCCTTCATTACTTGCTCATTATTATCCCTCATTGAGCCTTGTATAATTGTTTTTGCATTAAGAGTTAGGTCCCAAGGTCGATTTCCAATTAAGTCAGCTTTTGCTGCTCATTTTTTTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325775" ref_strand="+" ref_description="SGN-U325775        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to glycosyl transferase family 43 protein [Arabidopsis thaliana] (TAIR:At2g37090.1); similar to beta-1,3-glucuronosyltransferase [Gossypium raimondii] (GB:CAI93172.1); contains InterPro domain Glycosyl transferase, family 43 (InterPro:IPR005027) | chr1:9603540-9606088 REVERSE | Aliases: T22C5.4(evalue: 1e-120, score=429) genbank/nr: gi|32968172|emb|CAE12011.1| beta3-glucuronyltransferase [Lycopersicon esculentum](evalue: 2e-148, score=528)">
      <seq>ttgattatgtatccaggaaactgttgattgtggttactccgacttataatagggcacttcaagcttactatcttcttagattaagcgaggtgttgaagcttgtaaaatcacctctgttgtgggttgtggttgagatgaatgtggcgtctgcagagactgcagacattttgaggaagacaggagttatgtatcgccatctggtgtgctccaagaacatgacagatataaaagaccgcggggtgcaccagagaaatgttgcattggagcatattgaacatcataggctcaatggaattgtttactttgcagatgatgataatatctactcacttgagttgtttgagagcattagatcgatcaatcgttttggcacttggcctgttgctatgctagcacaaagcaaaagtaaagcaatactggagggccctgtgtgcaatggaagtcaagttattgggtggcacaccaatgagaagagtaagcaacttagaagatttcatgtcgatatgtctggttttgccttcaatagcactatattatgggatccaaagaaatggcatcgaccaacttcagatcccatacgacagttggacaatgtgaaggagggtttccaagagaccactttcatagaacaaattgttgaagacgaaagccaaatggaggctgtccctcctggttgctcaagggtattgaattggcaccttcatttggaagctcacggagctgtctatccaggaggctggctgcttcaaaagaaccttgatgccattatctctaccacatgagaaacacaagcaaggtgcaggaactctaaatggtgtccatgaaggccagtgctaatcccagtaggaagctatcattttcaagctgatcagggaattactagattgccaaagttgaagcagcaagcatgccttcaatgtcaagctagctataaagaaaggagtgattcattttatttttgactttctcgactttattctttgacagcatcagaactcgttttgttatggagttctgctgctttttcccaaggagagggatgtggtttcttcaatttccattgcaaaattgattgctactgccatcacagaaggcggaatgtgtgcatgttgtagaatggaatggttgtgattattatcctcggaagcaggaagcaagtgatgcttagttcaagttgtagtcttttactattgtgttactgatggaatagttatcatacaaaatttgcaatttaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="+" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="34833" stop="41965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35133" g_stop="35493" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35494" i_stop="40390" i_length="4897">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40391" g_stop="40640" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="611" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40641" i_stop="40750" i_length="110">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.696" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40751" g_stop="40965" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="826" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40966" i_stop="41258" i_length="293">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41259" g_stop="41670" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="1238" r_length="412" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="+" ref_id="SGN-U325775" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>1238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35133" e_stop="35493"/>
          <exon e_start="40391" e_stop="40640"/>
          <exon e_start="40751" e_stop="40965"/>
          <exon e_start="41259" e_stop="41670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTATGTATCCAGGAAACTGTTGATTGTGGTTACTCCGACTTATAATAGGGCACTTCAAGCTTACTATCTTCTTAGATTAAGCGAGGTGTTGAAGCTTGTAAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAGACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAAGTAAGTTGAGATTCATCAGTCTTGTTTACATGACTTGTCTTTGTTTTGTCCTGCTGTGAGCATGTTCAGGATGATGTTATGTGCTTTATGTAGATGTTCAAGTCGATAATAGTGAATAGTCTAGAGCTATTTCACATATATTACAACTTCACTAACAAATTCTTTTCCTGGTGTCCTCGGTTCATCACTCTTCATAGTTATAAGAATAACAGTTGTAGATTAGACCACTGGTCGTGTGATTTTTGGACTTAATTATTATCTCAATTCTTCCTCAAAATAGCAGTCCTTAGATTAGAAGCTGAGGAATGACCACCTTGTTAGTGTATAATGGAATCGCCTTCTTCTGGTAAAATATAAATTTTGTGAATTTTATTAGTGGACAAAAAGAGTTACATGATTTGGATGACCGACTTTTATGAAGGGCTATAACTCTGACATGCCCACCAGATGTAACATCTTCATCATTAGTGTGATCATGTGTTTGTTCATTCTTAATTGATGTCAAAGAAAAAGCTTGGCTTGACAGAGATGTACTTCAACCACTTGGTTGGACAGATGTGCTTCAATCTTTTCAGTAGAAATCTTGACTTCTTTCAATCCAAATAAGAGAACAGAGTAACCACTCAATGTGGAAGTTGGATATAGAAGTATTAGTAAGAACTAGCCATAGACTTGTTACACCTGTTCTTTTGTCGATGCCTAGAATTGATACATTAATTTCACTTGTCATCTTCTTTCTTTGTAGAATTCTTTGTGATGCCTCTATCCACTTCTTTTTGTCATTCACCTGCTTCATAGAAAATCCTTGTGATGCCTTCATCCACTTTATCTTCTTTTCAAGGGGTTTTAAAGAAACATCTAGTCTTCCCATCTTTATTATGAGAGTCAGGACTACATTCATTACTAATAATTTTCCACTTTTTTCTTGTTATTTGGAATTGTAAATGTCATACTACGTTTTATTACTATAATTAGTACGGCATGCTTGCTATCATAGTCAACAATTAGAACCCTTAATAAAATGTACTGTATTTATAACTATAAGAGTCCTCTTTTATAGCATAGGTGAAATTAACTTATTTGTCTCTTCGACTTCTAACAAATAGAACTTATTCATGTCTCTGCTTAGTCAAAAGCTGTCTGATGTTTACATAAAAATGACTTTACTGGTATCGTTCCATAAATTGGTAGATTGACCCTCGCAATAGTGAATTTGAGTGTCCTATGGGCTGCTCCGTGAAGAGTAGCTGCTACTTATCTTCCTTGATGTCTACCTCACACAAGTAAAGCTTAAAAGAACTGCCACTACAAAACTTTAAACTTGGTCAAGATGTCTTGATACTTGTCACCAAGGAATTCAGTCTATAATATTCCTTCGTAAATTTCTTATTGTTTAATATGTAGAAAATAAGTCTCACTGAGGATTAGAAGCAGTGAGCTCCGAATTTGCCTGCAGAGAGAAGTATTGCGACTTCTTTATGCAGCAAAACAAGCCTCAATGGACTGCTTTTACTGGAAGTTAAATCTCAACCAAGAGAGGTGCAAATAATATGTCAGAGAGATGAGCTTCCCTGCTGCAACTGAATGAATTGTATTTAAAAGATATGGTTTCTACGATGTAAGACTATCTATATATAGTTACTCGAAACCCGATCCATATCCTAGAAAACTAGTAATATTCCAAGTAGTTAATGCAAAAGAAATGAATCCTGAACCATCTATGGGAATTAAATCCAAATACAGTTTGAGCTCAAATAACAACATAGACTCGACAAGTTAGTATTGATCAAAAAACACACTAGACAAGTCAGTAACTACTTGTGATGCTCCTGGAAAATATTTTGTTCTTTTCTTGATAATGGTAATGTATTCCTCAGAATCAAGGATATGTTGGAGACCTCCAAAAAGTTGTGGATTAGTCAACAAAGACTAATCAATTACAATGATCCTAAGTCCTAACAGATCTGTTAATTGTTCAGCTTCCTCTACCCTTTCTTCTTTACCCCAAACATAAAAGGTAACAATACAATTCCATTTGATCTTATGAGGGGGACTAAGACTACCTTCAGAGCATCTTTTGTTTCTTTCTTTGCATGTTGTCCACCATATACAAGATGGGATGATTCTCAACCATTTCTTGTGACTCTTGCTGCCTCCTCTCCTGATCCAGCAACTGAGAAGATCTGTTGTGTGCTCGAGCATTATCCACTTGCTTTGAGAGAGACTAAGGAATAGGGCCCAAATTTGTGAGGTCACTTTACAATGCTCCTGGGAAATAGTATATTCATGTCAAACATGGGTCAGAAATGTATATGCTAGACTGTTGTCTTCTTCACTGAAAGAGGCAATGTATTTTCTTGGAATGTCAGTTGATTTGTGAAGAACGCTCAGTAGGTGACCTTGTGACTCCAAAAATAGAAGCTGCATATCTTTGTCCACTATCTATTCAAGATAGAATCTATTAAGTGTTGCAGTATTCCGATTCTTTTCTGTTCTTCCTGCATCAGCTCCTTCATGGAAATTCTTGGATCTCCTGATAGTAATTGTTTGAACTCTTCATACATGTTCGGATCCAATTTCTAGAGTTCTACCTCTGAGATCAATTGATTTGCATAATGAGGAAAAGATGATAGAAATTGCTGCCTCAAGAATGAACTTCTTTACAGAGCCTTGTCTCTAAGGTTCTAGGTTATTGCTCATCCCATTCTGATCTTGTAGCTGTTCTCAGATATCATTGGATTAAATTCATTTACTCGGTAATTTAAAAATTGGACTATTTTGCAGACCTTTAGGCAAATTCCAGGGCATTAGCATTTGATATGATCTTTGTTAATGCTTTAACATGGACCAATTTTCTTCCACCTAAAAGTTATGAAAAGATCCCTTAGGAAATCTTACCTTCTAGTAGTTGAAAACTTGGTTTGCAACAGCAATTTACTTTGAGCAACATTATCACCTCTGCTGCATCCTCGTTTTCTTATTGCTTGCCTCTTTTGCTACACCATACTTCATTTTGGATCTTTGAAGTGAACTTCGTTCCAGTCTTCTAATGTGCTTGACGTTTGCCGTCCTTATTAATTTACGCAGTCTCAGCCTTGAGAAAAAATTGACCATTCTTTGTGTGATCACCTACCGTGTTATAAAATAGGTTACAAATACTTCCAAGCAACACCTCCCTTTTGGCTATAGGAATTGTGTTAGAAATAGATCAGTTTAGCTCCCAACTTTTCCCGCAAAGTAATCCAATGAGGCAATGACTCTTAAATGGTCGAGACGAAGGTCATAAATATGACTCTTAAATGGTAACATATACCATATTGAATATATCTCACAGGTGGATGTTTTAAAAAGAATCTCACAGATGGCTGTGATTCATGCCGAATAGCTCATGAAATTTCTCCCGACAACATAATTTTCAGAGGATACAAAGGTTGGTTTTTTTGCCACAATTGACAAATGTAACGGGTAGTAAATTGTGGTTTCCAATTTTTATTGCTTCCTCAAATCCTTGTTTGACGACAATCAATTAATCTTCTTAGGCTTTTGAATATTTGTGGATTTAATCTCACCAATTTAAAAATAATAATAAATAAATTGTGTTCCTCTTCCATAGAATGCGAAGTTAATGATCATTACTGTGTTTCCCCCAGAAATTCGTCCTCTGATCCTTGGCTCCCTCTAACTTAAGCATTATATTGTCCAAAGAAAAATTAATCTTTCTGCTTGCTCTGGCTGCAATCCATGATCTTCGCTTATGATAGGAGTTCATAGCAACTTATGAATTGAAGGAAATAATTAAATTTTTTTTGATATACTGTATTATGAGCAGTGAGAGGTTGAACTGTAATTCTTTTGCCCCTGTTCTTTCATTACTTTTGCTGTTCGATAAACCTTGGGAAATTTGCGCATATGGTGGACCATATGGAAGGAAAGGAACGAGAGAATTTTCCAAGGAAGATCAAAGGGAAATGCATTTCTACTTTATGTTTTTGGTGTAAAGAGCAATGAATAGTAAATGAAATACAGATAATGGATTTCCTAGGCTTATTGTAATTAGCTATCTCTGCAAGCACACTTTTGGAGGTGGCCAGAAGAATACATGTAACCAATTTCAAAAAAAAAAAAAAACACCTTCGGGAATTTCCTCAGCAATAGACAACAAATACTTCTTGTCCATGCTTTAGTCATATTCATATGATTCCTTCTTTGTGAGGACCAGCGAGTGCTGCTCGCAAGGTATAATAAGAGCCAATGCATGTAAGATATCTTTGTTGTATTTTGCTCTATAGTTTTATTTTTTTTCTTGGACTTGGTAACTTAGTTTTAGCATTTACTTGAATAAAATCATCTAACAGGGTTGCTGCAAGGTTTGAGCTTTCACTATGACAGATTACCATGCTTAGAGTTCTGCATGAATTCAGTAATATGTAACCTGACTTGAGATTCTGCCTGAGTGTCGAAGTAACTGATCTATTTTTTTGTTCCCAGATCCCAGCTACTTCCCTTAAAGAAAGTAGGCTCTTCCATGCTATTGAAATTTGTTGTGGAAAGATGTTGCAACTCTTCTTCTTTTTCTTTTTAATACTAAAATAAGCACAACTATTCAATAAAACAAACTTATATCCTCTTCTGGGACACACTTCTGGTGAAATTCTTTCTTATCTAGGAAGTATGGTAAAGTAAAATGGTTGAGCTAGGACATAAGTAACTATTTATATTATTGTTGGTATGAGAGGTAATATGTATGTTGTTACTTGCGAATATGACTGTTTTTAGATTCTATAAGTTGAAGGAGAGCACATTGTTTTAGCAGATTTGACGTCATTGTTGGAATATTCTCCTTTTGTCTTTATTTTTTCTTATCTGCTTATATTTTCTTGTGATCTCCACTTTGTAGTCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGTAAAGCAATACTGGAGGGCCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAATGAGAAGAGTAAGCAACTTAGAAGATTTCATGTCGATATGTCTGGTTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAAGTATGCTTCATATTCCGCCTCCTTTAAAAAAATTTATTTCTTTACTTTGGGGATAGAAGCCTGCCTGAACAGGTTGAAGTTGGAAATTTGCTCACAATGATTACTTGCAGGAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATTTGGAAGCTCACGGAGCTGTCTATCCAGGAGGCTGGCTGCTTCAAAAGAACCTTGATGCCATTATCTCTACCACATGAGAAACACAAGCAAGGTGCAGGAACTCTAAATGGTGTCCATGAAGGTCAGTGCTTCTTATAATCACTAAACCCACAACTTCCCTTGTCTTGAAAAGGGAATGGTCAAACGCGAAATAAGTGAACTAGGGGTTGGTGGGGTGTGAGGAGTAGCTTCTCTTAATTAACATCATTTTATTCCCAAAATGAAGATTCATTCTCCCCCCGCTCTCCCTTTTGTTGCTAATATCCAGAGACCTTTTTGGCATTATTGTTGGTTCTGCTGCCGTGTCCAATGTCCATATTTAGTTTGACTGAGCAAGGAAAAAGGAAAGCACTCAGCTGCAATTCTTTTTGACAGGCCAGTGCTAATCCCAGTAGGAAGCTATCATTTTCAAGCTGATCAGGGAATTACTAGATTGCCAAAGTTGAAGCAGCAAGCATGCCTTCAATGTCAAGCTAGCTATAAAGAAAGGAGTGATTCATTTTATTTTTGACTTTCTCGACATTATTCTTTGACAGCATCAGAACTCGTTTTGTTGTGGAGTTTTGCTACTTTTTCCCAAGGAGAGGGATGTGGTTTCTTCAATTTCCATTGCAAAATTGATTGCTACTGCCATCACAGAAGGCGGAATGTGTGCATGTTGTAGAATGGAATGGTTGTGATTATTATCCTCGGAAGCAGGAAGCAAGTGATGCTTAGTTCAAGTTGTAGTCTTTTACTATTGTGTTACTGATGGAATAGTTATCATACAAAATTTGCAGTTTTTTTT</genome_strand>
        <mrna_strand>TTGATTATGTATCCAGGAAACTGTTGATTGTGGTTACTCCGACTTATAATAGGGCACTTCAAGCTTACTATCTTCTTAGATTAAGCGAGGTGTTGAAGCTTGTAAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAGACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGTAAAGCAATACTGGAGGGCCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAATGAGAAGAGTAAGCAACTTAGAAGATTTCATGTCGATATGTCTGGTTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAA..............................................................................................................GAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATTTGGAAGCTCACGGAGCTGTCTATCCAGGAGGCTGGCTGCTTCAAAAGAACCTTGATGCCATTATCTCTACCACATGAGAAACACAAGCAAGGTGCAGGAACTCTAAATGGTGTCCATGAAG.....................................................................................................................................................................................................................................................................................................GCCAGTGCTAATCCCAGTAGGAAGCTATCATTTTCAAGCTGATCAGGGAATTACTAGATTGCCAAAGTTGAAGCAGCAAGCATGCCTTCAATGTCAAGCTAGCTATAAAGAAAGGAGTGATTCATTTTATTTTTGACTTTCTCGACTTTATTCTTTGACAGCATCAGAACTCGTTTTGTTATGGAGTTCTGCTGCTTTTTCCCAAGGAGAGGGATGTGGTTTCTTCAATTTCCATTGCAAAATTGATTGCTACTGCCATCACAGAAGGCGGAATGTGTGCATGTTGTAGAATGGAATGGTTGTGATTATTATCCTCGGAAGCAGGAAGCAAGTGATGCTTAGTTCAAGTTGTAGTCTTTTACTATTGTGTTACTGATGGAATAGTTATCATACAAAATTTGCAATTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328182" ref_strand="+" ref_description="SGN-U328182        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to Symplekin (SP:Q92797) {Homo sapiens} | chr1:9595480-9603242 FORWARD | Aliases: T22C5.3(evalue: 2e-41, score=166) genbank/nr: gi|15217635|ref|NP_174080.1| expressed protein [Arabidopsis thaliana](evalue: 1e-39, score=166)">
      <seq>ctgctcttcatgagaacagtgattcaggccattgacgcgtttcctactctggttgattttgtgatggagatactctccaaacttgtggttagacaggtatggaggatgccaaaattgtgggtgggattcctaaaatgtgtctcacaaacacaaccacattcttttcctgtactactacagttgccaccagcgcagcttgagagtgctctaaacaaatatgttaatctccgaagtccattgcttacctttgttaatcagccaaatattaaaacttcactccctagatcaaccttggtacaacttggtctttttaatgagagtttgcagcaatcacatctctcatctactgtgcatgcctcagagactagtgcttctgttcatggaacaactctaacatgacagtgcactttcttaaaggaatgcagtgtagtaatacacggcgtgggcaccagtgttactgcagctccttattgcaacaatctgctataaatctccagagtctgtaaattgtggctagtatctgcgccccttggaagttcggctcaatctgctggcgacaagatggctcatgcgatggcagtgtccaaaagttttgaggagaaatctccctttggagaatgtaccataagacatcaatttccctcgcagttccttaccagctatatgtttgtcattcattatatttgtgtaatttttctgcctacaggcatcagttgaggtgtctaggcaaccaattggtgctgtggggagtagaatagctggtaggataggttatttagaaccttttgtatgagagggaggcagctggaagtgtgtaattgtactgtagttttatagccccatcccacttccccttacccctcccccacttgcctacttgtggtcagagtaaatgggttcaattagagattacagagtaaaggaaaaaaaagaacacttctctagtttttctaaaaaaaaaaaaaaaaaactcgaggggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="-" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="49016" stop="43041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48716" g_stop="48666" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48665" i_stop="44724" i_length="3942">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44723" g_stop="44679" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="96" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44678" i_stop="44593" i_length="86">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44592" g_stop="44509" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="180" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44508" i_stop="44417" i_length="92">
            <donor d_prob="0.167" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44416" g_stop="44313" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="284" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44312" i_stop="44015" i_length="298">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44014" g_stop="43341" g_length="674"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="956" r_length="672" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="957" polyA_stop="971"/>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="-" ref_id="SGN-U328182" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>958</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48716" e_stop="48666"/>
          <exon e_start="44723" e_stop="44679"/>
          <exon e_start="44592" e_stop="44509"/>
          <exon e_start="44416" e_stop="44313"/>
          <exon e_start="44014" e_stop="43341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCTTCATGAGAACAGTGATTCAGGCCATTGACGCGTTTCCTACTCTGGTAAATCACTGCTCCTGTTTTATATTGTATATTAATCAGTTGGGTGCGCATAACTATGTTCCAGCCTTTTTACACTGTTGAGAATACAACCAACCAGTAAAAGTGTGCTCTCTCTGTTAGTTTGGGTGCACGTAACTAATAAAAGTGTGCTCTCTCTAACAGATTAAGCTTTTAGATGAGACGGTTACACACTTCTACATGGTATTGGAACAAGTAAAGTATCAAAAAGAACTTCCATGTGCTTGGCCCATAAAAAAATCAGGCCCGAGTGTGAGGGGACGTTTTGAGAACAGTGGCGGATCCAAGATATATATTCAGGGGGTTCGAAAAATTATAATATAAATGTGTGAATAAGCCAACAAAATACAATTCCAAGGAAGTACTAGTATATAGTTTATAAGTACAAAAAGTTAGTTCCATTAGCTTAGACCTTTTAGCACGGTTGGATTTTTTTGGGTTTAAATATACTCTTTTTAAAAAAGAAAAACAAAAATTATGAAAGATTGGTTCTGAAACAAAATGAAGAGAAGGTTAAAAAATAAAACGACCACAATGAGATTCGGACCTTGGACATGAGGGCCAATCTAAAAGGAAATCTACCACTAGACTACGACTTCCTGTTCATGAGGGGGTTAAATTACTATATCTACATAAGCTCAGAAAATTTACCTTATAATTATAGTGTAATTTTTTGCTGTGGGGGTTCTGGTGAACCCCCTAGAGACCACATGGGTCCGTCCCTGGTTGAGAATACAATTCGTTTAATAAAAGCGTGCTCTCTCTAAAAGCTTAAACTTTTAGATGAGATGATCACACACTCCAAACATATTGGTCTGCTATTGGATTTTTTTTTTTGGGTTATCATTTGCACAATCTGCAACAGTGCTACAGCCTGCAAGTCTCACACCTTGATACATTCATATATTCTGCCAAACGAAGTATGGATTAGGTGAGTATTTATAGAGTGGGATTGTCAATTATGAAGAGAACGTGATGCTGTTGAATGCCTTATTTGTATTGGACAAGGACTTTTGAGAAGCAGTTTTTATTTTTATTTTTGAAAATTAGTAATCGTGAGTAGTGTTGGTTTTTTATAAGATGGTGCAACAAAAAGGGCTGAAAGTATTTATTGAAAATGTCTCTCCGCAATTTTATTTAAGTCAACTTGAAACAAAAGCCTGCATAATTTGAAATAGAAAAACTAAGATATCTCAACAAACTAACCAAAATCTAGTAGAAATTTAAAATTCAAATCATCCTAAAACTAGCTACTTATTATGCTAAAAATTTACTGCAGTAACTTAAACAAATTTCAACACTCCTCCTTTGCTTTAGTTGCTGCAATTTTAAAAGAGTGCTCCTACTTTTTTCCTTCGCGGTTGGTGTTGAATTCTTTTTAAGTGCTTTTGAACTTGCAATTTTTGTTATATAATCTCATCTAACTCAATTTCCTTTTCTTTTTCTATCATATGCTTCAAGCATTTTCCATTTACAATTTCTTTATTTTGTTGATGGAGAGTGATTGTGTAATTTCTCTTGTCAAATGGAAGAGAATTTGACCTGCGTGTTATAAATAAAAAAAAATCTGACTTCATCTTCACCGACCAAAATAAATGATTTTCATCAATGAAGGTCCGAGGGAAATCAAAAGATAGATGCTTGTCATGGTTAAAAATATATATGGATAAAAATTTGTATAGTTAAAATATGTATTGGTTGAAAATAGTTGTGTGTTAATATAAGCATAAGCTAAAATTTTGAAAATTGGTATTGGTGCCCAAGTGTTAGAAATAAGCAAGGGTTTAAGATGTTGCCCGTGCTTTAAAAATAAGCATGAGTTGAAAATCGGTTGAAAATTGATATGGGTTAAAAATGATTTAAAATTATATTTCCTCGATGAACGCAAAGATCCATTTATATCAGTGGAAGCTCTTGATGCCACCGCTGGTTTTTAGAAGAGGATGCAACCAAAAGGGCTGAAGTATTGATTGGAAGTCTCTCAGCTATTTTATTAAGCATAGGAGGTCTTTAAATAGTCAGTTTAAAACAAAAGATTTGCATAATTTGAAATTCAAAAAAACTAAAATATCTCAACAAATTAATCGAAACTTGATAGAAATTTAAAGTTCAAATTATTCTAAAACTACTAATTTATTATGCCAAAAATTATTGTAGTAACTAAAAACAAATTTCAACAATTAGAATATGTGAGTTTATGGGTGTGACTTAACGTCTTAGGCTTCATCATTTTTATGTTTGTTCAATGTGGGACAACAACATGGACAACACTGTTCTAGCTATCTAACACCCACCCCTCAAGCATATACATTGGATGTGTCGAGCATGGTGTACGTATGCAGTTAGTTGAGTACTTGTGATAAATTTGGTATTGGACTTCACAGATCTTGTTAAATATTTCAGAGAATATTTTTTCTCTGACAAAGTGACCGTGAATCTCTCTGTGTTCGGTCTTCTCCCAGAACCTGGAATTGAAGCAATATGCAGCGTAGTTTGATTATTACAAACAAGTTCCATCAGAGTGATTCTTCAAATTTCAATTCTTTCCACAGTCGTTTGATCCAGATGAGTTCACATGTAGCAACTCCCATGATTCGATATTCAGCTGCTACATAGGTCTTGCACCAGAATTGGTTCTTACTCATTCAGGAGATCAAATTGCCTCCAATGTAGGGATGTTAAAAGGGGCGGGGCGGGGCAGGGCAGTTGCGGGGCAAACCCGCATAAACCCGTGAACACTCCAACCCTCCCCTCCCCGCCCTGCCCTGCCCTGACCCACACGACAAAATATATTTTTTTAACCCACCCCTCCCTGTATAAATCGGCTATACGTAATTATTTTTCATCATCACGATGTAGTATTACATTGCGATTTTTTTCTCTTTTTTATTTAGTCATATATCTTTCTTTTTTGCTTGTCAAATTCTCTGATCAGTTTACTGCTTTAACATTTATACTAAGAATATTTTTATGACTTGTATAAGTTAAAGGGTGCTTATATAATGAACCTAGAAAAAAATTCATTCCTGTTCTCTGTTACAGCTTAACAGGAAGAAACAAGGAACTAAAAAGTATCAAGTATCTTGAATTTTTCTTGTTGTCTTTTATAAAGAATAACAATTGGGAAGGGTGGAAAAATTGTTTGTTGATTTCTACTAATATTAGTATCATCTTGACCTTGTGAGTTACATAAATAATGAATGAAAAGAAAATTTGATTTCAAGTTTATGAACAAAATTTATTAAGTTATAAAACTGTGAAGATCATTGATCCGTCAAACTGTTTTGTTCCAAAATGTGGAGGGAGGGAACCTGCAACCCCCCCCCCCCCCCCTGCCCCACCCCATTGCCATCCCTACTCCAATGAGAACACAATGTCCAGAGATAGAGTGTCTATCAGGATATTACCATGCTAAATTAGCATCTGAATACCTGACAATCATGTCCTTGATACTCATGAGTTGACACATCTTAGTATCTTGATTTATTTTTGGATAAAGTTATTCTTCCATGTCTCTTAGTTTGCATTCCTTTGGCCTGCCATATTAAGCACAAAGGGGCAATGTTGAAGACATAAGCGAATAAAAGCTGTTTCTTGAATAATTCAAGCTCTTAGATGAGAGGGTCACACAGTTAAACACCATATGGATGTGATTATTGGTCTTGGATTTTGAAAACTACGCAATCCAAGATATGTAATCCGTCTTGTCTCTTTCCTTCTTTCCATTTGATGGTTGGAGGGTTGGATTCCTGGATGTTTATGAACTAGCTCTGATAGAGTACTGCTGGAGTATTTCATCTACATGTTGATGCAGCTGGGCAGCACTAGAATTTTGACAGTGCTTCTTACTGAGCATATATTTGTTTGATGTGGAAGGAATGTAGTCAATGTGTTTGACACTATCTTCTTATTTTTTATGTTTAGGTTGATTTTGTGATGGAGATACTCTCCAAACTTGTGGTTAGACAGGTATTTAAGCTTAGATTTCCCCCTAATCACAAACTATCGTTATTGCTGTACAAATGAATTGTCATCCTATTGCATATTGGATGCAGGTATGGAGGATGCCAAAATTGTGGGTGGGATTCCTAAAATGTGTCTCACAAACACAACCACATTCTTTTCCTGTACTACTACAGGTATTGTTTGGTGATTTATAATATTACTATATTGTGCATGGAGGCGACCTTATCTGTATTTTGTCTTAAAATGTGTTTGATCTTGTTTGCAGTTGCCACCAGCGCAGCTTGAGAGTGCTCTAAACAAATATGTTAATCTCCGAAGTCCATTGCTTACCTTTGTTAATCAGCCAAATATTAAAACTTCACTCCCTAGGTATATTTTGTATCTGATCAACCGTTTAGTAATTTCCCATCTTTTTCTGCATTATGTCAACTGGAATTATCTCAAGTTCTCATGGTACATGCTGCATCTAATTTTTGAGACATTATTCTAAAAGTAGAAAATCAGATTGTGTCTTCATGTGATCCTAGAATAAGAGCTAATTGCATGATCCATTATGCTCAAAAAGTTTCTTCATGATTTACTTATCCAAAAAAAAAAAGACCTTGGTCATGCTTATTACAAATTAACTAGTCTTTGTGCTTACTAAAGTTGTTTGGCATTGATGCAGATCAACCTTGGTACAACTTGGTCTTTTTAATGAGAGTTTGCAGCAATCACATCTCTCATCTACTGTGCATGCCTCAGAGACTAGTGCTTCTGTTCATGGAACAACTCTAACATGACAGTGCACTTTCTTAAAGGAATGCAGTGTAGTAATACACGGCGTGGGCACCAGTGTTACTGCAGCTCCTTATTGCAACAATCTGCTATAAATCTCCAGAGTCTGTAAATTGTGGCTAGTATCTGCGCCCCTTGGAAGTTCGGCTCAATCTGCTGGCGACAAGACGGCTCATGCGATGGCAGTGTCCAAAAGTTTTGAGGAGAAATCTCCCTTTGGAGAATGTACCATAAGACATCAATTTCCCTCGCAGTTCCTTACCAGCTATATGTTTGTAATTCATTATATTTGTGTAATTTTTCTGCCTACAGGCATCAGTTGAGGTGTCTAGGCAACCAATTGGTGCTGTGGGGAGTAGAATAGCTGGTAGGATAGGTTATTTAGAACCTTTTGTATGAGAGGGAGGCAGCTGGAAGTGTGTAATTGTACTGTAGTTTTATAGCCCCATCCCACTTCCCCTTACCCCTCCCCCACTTGCCTCACTTGTGGTCAGAGTAAATGGGTTCAATTAGAGATTACAGAGTAAAGGAAAAAAAAGAACACTTCTCTAGTTTCTTCGAAAA</genome_strand>
        <mrna_strand>CTGCTCTTCATGAGAACAGTGATTCAGGCCATTGACGCGTTTCCTACTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATTTTGTGATGGAGATACTCTCCAAACTTGTGGTTAGACAG......................................................................................GTATGGAGGATGCCAAAATTGTGGGTGGGATTCCTAAAATGTGTCTCACAAACACAACCACATTCTTTTCCTGTACTACTACAG............................................................................................TTGCCACCAGCGCAGCTTGAGAGTGCTCTAAACAAATATGTTAATCTCCGAAGTCCATTGCTTACCTTTGTTAATCAGCCAAATATTAAAACTTCACTCCCTAG..........................................................................................................................................................................................................................................................................................................ATCAACCTTGGTACAACTTGGTCTTTTTAATGAGAGTTTGCAGCAATCACATCTCTCATCTACTGTGCATGCCTCAGAGACTAGTGCTTCTGTTCATGGAACAACTCTAACATGACAGTGCACTTTCTTAAAGGAATGCAGTGTAGTAATACACGGCGTGGGCACCAGTGTTACTGCAGCTCCTTATTGCAACAATCTGCTATAAATCTCCAGAGTCTGTAAATTGTGGCTAGTATCTGCGCCCCTTGGAAGTTCGGCTCAATCTGCTGGCGACAAGATGGCTCATGCGATGGCAGTGTCCAAAAGTTTTGAGGAGAAATCTCCCTTTGGAGAATGTACCATAAGACATCAATTTCCCTCGCAGTTCCTTACCAGCTATATGTTTGTCATTCATTATATTTGTGTAATTTTTCTGCCTACAGGCATCAGTTGAGGTGTCTAGGCAACCAATTGGTGCTGTGGGGAGTAGAATAGCTGGTAGGATAGGTTATTTAGAACCTTTTGTATGAGAGGGAGGCAGCTGGAAGTGTGTAATTGTACTGTAGTTTTATAGCCCCATCCCACTTCCCCTTACCCCTCCCCCACTTGCCT-ACTTGTGGTCAGAGTAAATGGGTTCAATTAGAGATTACAGAGTAAAGGAAAAAAAAGAACACTTCTCTAGTTT-TTCTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328739" ref_strand="+" ref_description="SGN-U328739        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, similar to Symplekin (SP:Q92797) {Homo sapiens} | chr1:9595480-9603242 FORWARD | Aliases: T22C5.3(evalue: 8e-60, score=227) genbank/nr: hypothetical(evalue: 2e-79, score=299)">
      <seq>gatttgcattatctcatgctatcgggttcggctgaaaatatttcatctgctgctgctctatatgagaaattcctcctcagtgcggcaaaatcgttgctggattctttaccagcacacgacaagtcatttagtaggctccttggtgaagttccatatctgcctgaatctgtgatgagactgctagttgatttatgctctgacaattatcttgggaacgatggtcgtgatggtgaccgtgttactcagggccttggtgcagtttggagtttaatcttgggtcgcccccctaatcgtcaagcatgcatggatatagctttgaagtgtgctattcacccccaggacgaggtccgagcaaaagctattcgcctggtgtcaaacaaactttacgtggttggtgacatttcagataatatcgagcagtatgctaagaatatgttcttgtcagctgtaaaccagcatgtcacagatgcagaatattcccagtctggaactttggttcagaggacaggagagacaggaaatcaggaagcgtcagttagtggttctcagatttcagggccaggattctttgaaaatgattttgttaagactgcagcaactgattctcaaagtgattcagagttgtctttagctcaagctcagcggcttatctcattattttttgctctatgcactaagaaattcagtcttctccaccttgtatttgatacttatgcacgtgctcctaaggcagttaagcaggctgttcaccgtcatatgcctattcttattagggctataggctcttcatgttctgaactgcttcgtataatatctgatccacctcaaggctgtgaaaatcttttgacacaggtgcttcatattctctctgaagggacaacccctccgcctgacttagttgcagttgtcaagcggttatatgaaactaaactgaaggatgcaactattcttattccagtgctctcttcatattctaagagtgaggttctacctatttcccaaatcttgttgctctccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="-" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="55668" stop="50643"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55369" g_stop="55286" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55285" i_stop="55215" i_length="71">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55214" g_stop="54978" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="321" r_length="237" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54977" i_stop="54004" i_length="974">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.628" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54003" g_stop="53956" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="369" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53955" i_stop="53832" i_length="124">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53831" g_stop="53688" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="513" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53687" i_stop="52076" i_length="1612">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.817" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="52075" g_stop="51911" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="678" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="51910" i_stop="51831" i_length="80">
            <donor d_prob="0.794" d_score="1.00"/>
            <acceptor a_prob="0.160" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="51830" g_stop="51768" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="741" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="51767" i_stop="51399" i_length="369">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="51398" g_stop="51288" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="852" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="51287" i_stop="51200" i_length="88">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="51199" g_stop="51116" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="853" r_stop="936" r_length="84" r_score="0.988"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="51115" i_stop="51028" i_length="88">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="51027" g_stop="50980" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="937" r_stop="984" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="-" ref_id="SGN-U328739" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>984</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U328739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55369" e_stop="55286"/>
          <exon e_start="55214" e_stop="54978"/>
          <exon e_start="54003" e_stop="53956"/>
          <exon e_start="53831" e_stop="53688"/>
          <exon e_start="52075" e_stop="51911"/>
          <exon e_start="51830" e_stop="51768"/>
          <exon e_start="51398" e_stop="51288"/>
          <exon e_start="51199" e_stop="51116"/>
          <exon e_start="51027" e_stop="50980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTGCATTATCTCATGCTATCGGGTTCGGCTGAAAATATTTCATCTGCTGCTGCTCTATATGAGAAATTCCTCCTCAGTGCGGTAAATAGAGTCATTTATTATCCTTATCTACATCATTCGCAAAGTTTCTTTAGTAAGTTCTTTGTTTGTAGGCGAAATCATTGCTGGATTCTTTACCAGCAAACGACAAGTCATTTAGTAGGCTCCTTGGTGAAGTTCCATATCTGCCTGAATCTGTGATGAGACTGCTAGTTGATTTATGCTCTGACAATTATCTTGGGAACGATGGTCGTGATGGTGACCGTGTTACTCAGGGCCTTGGTGCAGTTTGGAGTTTAATCTTGGGTCGCCCCCCTAATCGTCAAGCATGCATGGATATAGCTTTGAAGGTATATGACCATCAAATATTCGGTGCTGATGTTTTGCATTCACTTTACGTAATTGCAGGTATTAGTTGCCTAAGGAGTGCTAAAGCATCACTTTTAGGAGTAAATAGAGTTTTGGAAGAAAGAGTTAATAAGCAGACAGTTTAATTGAAGCAAAAGAACTACTTCGAAGTTACTTTTTTTACGTGTTTGTGACCTTGAGTAAACTCTTGTAACTGGAGAAGTGCTGGATCCAGTATAAGTATTGGATTCAAGTATGTATCTAGAGTCTTTATTCTCTCATAAGGTTCTCTGTGTATTTGAAGGATTATTACTGTCATGAGATGGCTGCATTTCATTTTGTTATAATGTTGTGCCGTATATAGTATTTGGTTTAATTAATATTGATGTCTGTGTGTGTCATATATCATTTTGTAAAATGTGGCTTTGTTATTTGTCAAATTTTCCTTGCGTTGAGTTTTTTGATGGTGTGTCTACCTATCATGTAAATGGAATCATCTTCTTCGGGATTAATAATAAACCCTGTAGTATTGGTTGGGGTTTTAGTATCTATTCTTGTAAATTTTTTAATTTATTTTTGTGTGTGGTGGTGGTGAGGTCTGTATATGGAGGCAATTAGGAGGATGAAGATCTAAGGCCCTCATTAGATTTGACTTGCAGGGTGGAGTTGCAACTTCAATCTCGGGTTTTAGTATCTATTTTGATGTTTATTTCTTTAGTGATTGAGTGACATCTTATTGTAATTGTTCTTGTTTTTTCTGGAAAGCATTTTCTTATATTCAATTTTGTACTGGACAAGAAAAGAATCCCTGTAGCAGACACGTGTTCAAAATTGTTTATCTGTTGAGTTCCATTATACCAAAAATACACAACTCTTTAACTGTCCTACAATTCTGCAAATAAAAAAACAAAAGTAATGCTTGCCTTTGGCAGAATGAGATTATGGTGCAGTCATTTAAGTTCATGCTTTCATGCAGTGTGCTATTCACCCCCAGGACGAGGTCCGAGCAAAAGCTATTCGCCTGGTATGCTACTTGTGACTGTTTTGTGTTGCCAGCTGTGCGTTTTCACCTGCTGGTAGCCATTCTTTACGATTCTTATCTATGGATTATTGTATCTGAATCGCTAAAATGTTGTAACTCTTGATAGGTGTCAAACAAACTTTACGTGGTTGGTGACATTTCAGATAATATCGAGCAGTATGCTAAGAATATGTTCTTGTCAGCTGTAAACCAGCATGTCACAGATGCAGAATATTCCCAGTCTGGAACTTTGGTTCAGAGGACAGGAGAGGTGTGTTCTTATTTTTGTGTTTGCCAATAAAAAATTCTCTCTGATTTTGGCTTTGTCGAATGTCTGTGTGAGTATATATATAACAAAATTGGGTTTCTGATCTTGCTTCCTCTTTTCTTTTTGTTCTGTTTGCATTTGTTCCTTTAGTATTTGGTCTTGAAGTTGTTGCTTGAGGACTGATTGATTTTAGAGGGCTCTGGTGGTTCCTTTATGGAAATTGTTTGTGGGTGGAGCCTCGTGTTCACGTTTGAGTCTCTTTTTTGGTTATTTCACGTCAGCTTGACCAGATTGCAGCGACTTGGAATTTTTTTTAAAATAAATAATATTTGAATATGAGTTGGGATGTGATTCCCGTAAACAAATTTGATAATTGAATAGATGTACTAGAAGATGAGAATTCTTGCATTGTAGGAACATGTAAAGCTCGTCTGCTAGGTTGTGGTCAAAAAATGAAGTTTCACTAGCGAAACATGAAATAAGACGTGCAATTTTGAAAAAGTGAAAATTATTTTTCAAGGTTCACCTTTATCCTTGCACAACTAAGATATTTTTTTTATATAATCTTGACTGAACAGGCTATTAGTTTGCAAGTGTACTAAAATTTGTGATTCTATTTCAAAGAATTATATTCAGAGTATTTAGACTAGTTATTTCATCTGGAAGTAGCAGTAGTTGCTAAGGACTTAAAAGATTAGAACTTCTCGTTTTCACTATGAGGAGGAAAGTTTATTCTAAATTTTTTTTCTGTTAAAATGCACGTCGTTCAATAGTTAATTCTTTTTAGTACGAAGGAAAAGGTAATCTTGAAAAATTAGTGGTTTTCTTACTTATTTTCTTGTGTTCGGTACATAAGCAAAAAATATTACCTCTTAAAAAAATTTGTATATAATCTAGGCAAATATTGTGGGTGTGGTTGTGGGGGTGGGAGTGAAGATGAGGTGTGTTGGATGGTGGAGGACTCTATCAATATGGAATTCCACTTGATTTTCTTACTTCCATTAGGGAAATCATTTTCCTCATTGTTAAGGAACCTGTTTTCCTAGAGAAAATGCTTTCTAAAATTTGTGACCAACCGAACATTAGAAAATTGGAAAACATTTCCTCCATATCAAATACACCCTAACAGTTGCTCAAAATGGTTTTGGGAAAGCAATCTTATTATTCTTGTTTTATTCAAGAACCCCAAAATATATGACACATCTGAGCTAATATTTTTATCCATTGATGGGACAAAAATTATGACCTGCTTAAAGGCTTTGTTGTTGAGATTATCTTCTATAGTGGAACTTGTTATACATGACTCTGTCCAGAGTCAATTTTCAAATCTTGGATGTTTTAGATGTGTATCAAATTCCTGAAATGATAAATTAGCTTTTATGTTGCTGCATGACTTAGTAACTAGGTTAGTGAAGTCCAATATATGGATTGAAGGAAGAGATTTTCTATTTCTGGACTCCAATAAGTTGAGGTGCACCTGCCTTCTGAAATTGCTTGCTTAAACTATCTTTGCTGTACCATTTCTCCTTCTATGTTGATAAATTCTTCTTAACCTAAAAAATTATAATTTTCCTTGAATTTGAATGTTATCCTAAGAAAAGAATATGATTATCAGACAGGAAATCAGGAAGCGTCAGTTAGTGGTTCTCAGATTTCAGGGCCAGGATTCTTTGAAAATGATTTTGTTAAGACTGCAGCAACTGATTCTCAAAGTGATTCAGAGTTGTCTTTAGCTCAAGCTCAGCGGCTTATCTCATTATTTTTTGCTCTATGCACTAAGGTTTGGACAATTTTACAAGTGCAAGGATGTATGTTGAATGTGCATTTATGATGATGCTGACCGGGTAGCTTTTCCTGCAGAAATTCAGTCTTCTCCACCTTGTATTTGATACTTATGCACGTGCTCCTAAGGCAGTTAAGCAGGTCTGTTTTTCTATTGTGCTCCTCTCTTAAATCCTAATAGCCGACTTAATAATGGTTTGTGTGAGATGAATTAATCATTCACCCCGATCGAACCATGAATAGGCCCGCAATAATTTGACTGTCATTTTATCAAAATGATCTGGATTCGTTAGGCCTCAGAAACCCAAAAAAAGAAGTAAAACTAGCATTTTGATGATCTACTCCCAATTTATTTTTTTTCAAGATGAGCTTTAATGAGGATCTACATTGCTCTTCTGGAGCACTATTAACAATCCCTATTAACTTGTGCTGAACTTCTTGTATTGCTCTTGTTGTCCTACTCATTTCAGTTGGCTGACATTCCTTCTATTAATTTTTGATCTGGTACAGGCTGTTCACCGTCATATGCCTATTCTTATTAGGGCTATAGGCTCTTCATGTTCTGAACTGCTTCGTATAATATCTGATCCACCTCAAGGCTGTGAAAATCTTTTGACACAGGTAGATTACTACACCTCGCATTTTAATTATTGCTTTTCATCTTGAACTCTCTTCCTTATCATGATGCCATTGTTTTGTTCACTGCAAGGTGCTTCATATTCTCTCTGAAGGGACAACCCCTCCGCCTGACTTAGTTGCAGTTGTCAAGCGGTTGTATGAAACTAAACTGAAGGTTTAGCATCTTTCTTTTTGTTTTTTTGATAGCTTTCTCAATCAGAAACTTCGCAGTTTCACCAATGATACCCTAAATTGTTTTGTAGGATGCAACTATTCTTATTCCAGTGCTCTCTTCATATTCTAAGAGTGAG</genome_strand>
        <mrna_strand>GATTTGCATTATCTCATGCTATCGGGTTCGGCTGAAAATATTTCATCTGCTGCTGCTCTATATGAGAAATTCCTCCTCAGTGCG.......................................................................GCAAAATCGTTGCTGGATTCTTTACCAGCACACGACAAGTCATTTAGTAGGCTCCTTGGTGAAGTTCCATATCTGCCTGAATCTGTGATGAGACTGCTAGTTGATTTATGCTCTGACAATTATCTTGGGAACGATGGTCGTGATGGTGACCGTGTTACTCAGGGCCTTGGTGCAGTTTGGAGTTTAATCTTGGGTCGCCCCCCTAATCGTCAAGCATGCATGGATATAGCTTTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCTATTCACCCCCAGGACGAGGTCCGAGCAAAAGCTATTCGCCTG............................................................................................................................GTGTCAAACAAACTTTACGTGGTTGGTGACATTTCAGATAATATCGAGCAGTATGCTAAGAATATGTTCTTGTCAGCTGTAAACCAGCATGTCACAGATGCAGAATATTCCCAGTCTGGAACTTTGGTTCAGAGGACAGGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAAATCAGGAAGCGTCAGTTAGTGGTTCTCAGATTTCAGGGCCAGGATTCTTTGAAAATGATTTTGTTAAGACTGCAGCAACTGATTCTCAAAGTGATTCAGAGTTGTCTTTAGCTCAAGCTCAGCGGCTTATCTCATTATTTTTTGCTCTATGCACTAAG................................................................................AAATTCAGTCTTCTCCACCTTGTATTTGATACTTATGCACGTGCTCCTAAGGCAGTTAAGCAG.................................................................................................................................................................................................................................................................................................................................................................................GCTGTTCACCGTCATATGCCTATTCTTATTAGGGCTATAGGCTCTTCATGTTCTGAACTGCTTCGTATAATATCTGATCCACCTCAAGGCTGTGAAAATCTTTTGACACAG........................................................................................GTGCTTCATATTCTCTCTGAAGGGACAACCCCTCCGCCTGACTTAGTTGCAGTTGTCAAGCGGTTATATGAAACTAAACTGAAG........................................................................................GATGCAACTATTCTTATTCCAGTGCTCTCTTCATATTCTAAGAGTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343105" ref_strand="+" ref_description="SGN-U343105        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaaaccctgttgaaaattagattatctgggtaataagaagtgtgtcaatgttacaaaaaatagcaatacattatcaaacaatacttggaagtgtcagacactacaaggttatgatgccgtatgtacaatttaagagatcaaaaatttgctaaactttaatgttgtcttcgaaatgtacagtgcttggttaataacttgtccaaacagttcttatcccaaatggcgtgacaaatttatccaccgcttaatctaccatctgtcaatcttgtagaaatcagctaacttttacatctgttatctgaaccatcagttcagcattccaagcaaaatgccattttaactccacgttaaaaagctgggctcatgctgcaataacagcaaaaataagcagttgaacttgaactacagccattaccaagcatctgtcaactctccataaattcaaagtaataaatcaaacagcagtcactgccaaaattttggagtcagaagtcttatttggctgggcaatatgggatttactgagaggttatgacaaaggatcatcagagtaattctttctggcaaacttaaaaaatactattggcagggatcactgccataattgccagttactgacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0110L05-ESWpf/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0110L05.1" temp_strand="+" temp_description="C04HBa0110L05.1  CU222535.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0110L05 sequenced_by:sanger upload_account_name:uk">
        <position start="65157" stop="66381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65457" g_stop="66081" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0110L05.1" gen_strand="+" ref_id="SGN-U343105" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0110L05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65457" e_stop="66081"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATC-AAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTTTTTCTGGCAAACTTAAAAAATACTTTTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</genome_strand>
        <mrna_strand>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATCAAAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTAGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTCTTTCTGGCAAACTTAAAAAATACTATTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="20252" PGL_stop="21345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20252" e_stop="20290"/>
            <exon e_start="21168" e_stop="21345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.667"/>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="20252" e_stop="20290" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="20291" i_stop="21167" i_length="877"/>
          </intron>
          <exon e_serial="2" e_score="0.949">
            <gDNA_exon_boundary e_start="21168" e_stop="21345" e_length="178"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20252" stop="20290"/>
              <exon start="21168" stop="21345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339546" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATACCGTCTCTCACTTATTATTATTATTTTTTTTTATT : TTGCAAATTGGACAGGAAAAAATGATGATGAATTGATAACTAGATATGAGTCATAATACTTGTTAGTAGTTGTTCTCATGAGATATTACTACATCTGAAAAGTTCACATTGATGTATCTAAGCACTAAGCATAATAGTCAAGTCTTACCATTTAAGATATCCCTGTCTTTGTTCAAAA</gDNA_template>
            <first_frame> D  T  V  S  H  L  L  L  L  F  F  F  I  :  L  Q  I  G  Q  E  K  M  M  M  N  *  *  L  D  M  S  H  N  T  C  *  *  L  F  S  *  D  I  T  T  S  E  K  F  T  L  M  Y  L  S  T  K  H  N  S  Q  V  L  P  F  K  I  S  L  S  L  F  K  </first_frame>
            <second_frame>  I  P  S  L  T  Y  Y  Y  Y  F  F  L  F :   C  K  L  D  R  K  K  *  *  *  I  D  N  *  I  *  V  I  I  L  V  S  S  C  S  H  E  I  L  L  H  L  K  S  S  H  *  C  I  *  A  L  S  I  I  V  K  S  Y  H  L  R  Y  P  C  L  C  S  K </second_frame>
            <third_frame>   Y  R  L  S  L  I  I  I  I  F  F  Y   : F  A  N  W  T  G  K  N  D  D  E  L  I  T  R  Y  E  S  *  Y  L  L  V  V  V  L  M  R  Y  Y  Y  I  *  K  V  H  I  D  V  S  K  H  *  A  *  *  S  S  L  T  I  *  D  I  P  V  F  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110L05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23651" PGL_stop="24208"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23651" e_stop="24208"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="23651" e_stop="24208" e_length="558"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23651" stop="24208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331925" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGAATCAAAGATTAGAACAAATTGTGACCATTGTAGTTTAAGTGGTATTTTCATGTTGAGGTTTTCAGCATGTTCCTTGGACCACAAAAGGGAAATCTAAGCCATTATTGAGGAACTCTAGAAATAAAGTTTTACTTGCACTTAACACGGTAAATAATTGAACAATTGTCTCAAGGCTATAGCTGATAATCAGCCATGTTATTTCTTATTACTCTCCTTGTGTTATAACGATAACCTCATAACGATAACAGCTTCTAACATAAACTAATCACCTTCTTTCTTTAATGAATAACTCAAGACAGTTTCCCGGCAAAAGAAGGTGTTTAATCTAGCACTAGTAGAATCCATGCCCAACAGACGATACGGGCAGTAGTTTTATTTATGCTTTTAGATAAGTTTAGCAGTTTTCCTCAACGAAATTATATATACCAACTGATACTGATACATACTGTTAGGAGAAATTAACATGTACTAATGCAGTCCTTTGCATGCTATTTCATCTTCAACTTCAATGAACCTTTATCTTAATATATAACCCAAAATAGTTTCTACATTT</gDNA_template>
            <first_frame> *  E  S  K  I  R  T  N  C  D  H  C  S  L  S  G  I  F  M  L  R  F  S  A  C  S  L  D  H  K  R  E  I  *  A  I  I  E  E  L  *  K  *  S  F  T  C  T  *  H  G  K  *  L  N  N  C  L  K  A  I  A  D  N  Q  P  C  Y  F  L  L  L  S  L  C  Y  N  D  N  L  I  T  I  T  A  S  N  I  N  *  S  P  S  F  F  N  E  *  L  K  T  V  S  R  Q  K  K  V  F  N  L  A  L  V  E  S  M  P  N  R  R  Y  G  Q  *  F  Y  L  C  F  *  I  S  L  A  V  F  L  N  E  I  I  Y  T  N  *  Y  *  Y  I  L  L  G  E  I  N  M  Y  *  C  S  P  L  H  A  I  S  S  S  T  S  M  N  L  Y  L  N  I  *  P  K  I  V  S  T  F </first_frame>
            <second_frame>  R  N  Q  R  L  E  Q  I  V  T  I  V  V  *  V  V  F  S  C  *  G  F  Q  H  V  P  W  T  T  K  G  K  S  K  P  L  L  R  N  S  R  N  K  V  L  L  A  L  N  T  V  N  N  *  T  I  V  S  R  L  *  L  I  I  S  H  V  I  S  Y  Y  S  P  C  V  I  T  I  T  S  *  R  *  Q  L  L  T  *  T  N  H  L  L  S  L  M  N  N  S  R  Q  F  P  G  K  R  R  C  L  I  *  H  *  *  N  P  C  P  T  D  D  T  G  S  S  F  I  Y  A  F  R  *  V  *  Q  F  S  S  T  K  L  Y  I  P  T  D  T  D  T  Y  C  *  E  K  L  T  C  T  N  A  V  L  C  M  L  F  H  L  Q  L  Q  *  T  F  I  L  I  Y  N  P  K  *  F  L  H   </second_frame>
            <third_frame>   G  I  K  D  *  N  K  L  *  P  L  *  F  K  W  Y  F  H  V  E  V  F  S  M  F  L  G  P  Q  K  G  N  L  S  H  Y  *  G  T  L  E  I  K  F  Y  L  H  L  T  R  *  I  I  E  Q  L  S  Q  G  Y  S  *  *  S  A  M  L  F  L  I  T  L  L  V  L  *  R  *  P  H  N  D  N  S  F  *  H  K  L  I  T  F  F  L  *  *  I  T  Q  D  S  F  P  A  K  E  G  V  *  S  S  T  S  R  I  H  A  Q  Q  T  I  R  A  V  V  L  F  M  L  L  D  K  F  S  S  F  P  Q  R  N  Y  I  Y  Q  L  I  L  I  H  T  V  R  R  N  *  H  V  L  M  Q  S  F  A  C  Y  F  I  F  N  F  N  E  P  L  S  *  Y  I  T  Q  N  S  F  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0110L05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="27933" PGL_stop="24552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27933" e_stop="27849"/>
            <exon e_start="26637" e_stop="26625"/>
            <exon e_start="24905" e_stop="24552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.799" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.964" e_score="0.692"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27933" e_stop="27849" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.799" acc_prob="0.000">
            <gDNA_intron_boundary i_start="27848" i_stop="26638" i_length="1211"/>
          </intron>
          <exon e_serial="2" e_score="0.692">
            <gDNA_exon_boundary e_start="26637" e_stop="26625" e_length="13"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.964">
            <gDNA_intron_boundary i_start="26624" i_stop="24906" i_length="1719"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24905" e_stop="24552" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27933" stop="27849"/>
              <exon start="26637" stop="26625"/>
              <exon start="24905" stop="24552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327969" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAATTCTTCGTGGAAGTATTTCTCAGGAGAAGAAGTTGCAGTTGCCAGCCTTTCCAACTTTATTCATTGGAGGAAACCATGAT : ACAATGTGGATAT : GTTTTCAGATTGCAAGTGAATAATGGAATTCCTATGATCAAGAGTTGGTGTGATGACCCCCATCAGACTCTGCACTTACTTCAGAACTTCCATTTCTAGTGACGCTGGCTGATGCTGATGATGTCTGTCCTATCATTGCTAAGAAATTCAGTAACAAGGGACACGAGTCCCTTGTCTCTTCCTAGTAGTTCCTCTAACTGTCCCTCATTTCTTACTTCATGTTAGACAATTTATCCTTCATTACTTGCTCATTATTATCCCTCATTGAGCCTTGTATAATTGTTTTTGCATTAAGAGTTAGGTCCCAAGGTCGATTTCCAATTAAGTCAGCTTTTGCTGCTCATTTTTTTCTCT</gDNA_template>
            <first_frame> V  N  S  S  W  K  Y  F  S  G  E  E  V  A  V  A  S  L  S  N  F  I  H  W  R  K  P  *   : Y  N  V  D  M :   F  S  D  C  K  *  I  M  E  F  L  *  S  R  V  G  V  M  T  P  I  R  L  C  T  Y  F  R  T  S  I  S  S  D  A  G  *  C  *  *  C  L  S  Y  H  C  *  E  I  Q  *  Q  G  T  R  V  P  C  L  F  L  V  V  P  L  T  V  P  H  F  L  L  H  V  R  Q  F  I  L  H  Y  L  L  I  I  I  P  H  *  A  L  Y  N  C  F  C  I  K  S  *  V  P  R  S  I  S  N  *  V  S  F  C  C  S  F  F  S   </first_frame>
            <second_frame>  *  I  L  R  G  S  I  S  Q  E  K  K  L  Q  L  P  A  F  P  T  L  F  I  G  G  N  H  D  :  T  M  W  I   : C  F  Q  I  A  S  E  *  W  N  S  Y  D  Q  E  L  V  *  *  P  P  S  D  S  A  L  T  S  E  L  P  F  L  V  T  L  A  D  A  D  D  V  C  P  I  I  A  K  K  F  S  N  K  G  H  E  S  L  V  S  S  *  *  F  L  *  L  S  L  I  S  Y  F  M  L  D  N  L  S  F  I  T  C  S  L  L  S  L  I  E  P  C  I  I  V  F  A  L  R  V  R  S  Q  G  R  F  P  I  K  S  A  F  A  A  H  F  F  L  </second_frame>
            <third_frame>   E  F  F  V  E  V  F  L  R  R  R  S  C  S  C  Q  P  F  Q  L  Y  S  L  E  E  T  M  I :   Q  C  G  Y  :  V  F  R  L  Q  V  N  N  G  I  P  M  I  K  S  W  C  D  D  P  H  Q  T  L  H  L  L  Q  N  F  H  F  *  *  R  W  L  M  L  M  M  S  V  L  S  L  L  R  N  S  V  T  R  D  T  S  P  L  S  L  P  S  S  S  S  N  C  P  S  F  L  T  S  C  *  T  I  Y  P  S  L  L  A  H  Y  Y  P  S  L  S  L  V  *  L  F  L  H  *  E  L  G  P  K  V  D  F  Q  L  S  Q  L  L  L  L  I  F  F  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27931" stop="27849"/>
                    <exon start="26637" stop="26625"/>
                    <exon start="24905" stop="24807"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFFVEVFLRRRSCSCQPFQLYSLEETMIQCGYVFRLQVNNGIPMIKSWCDDPHQTLHLLQNFHF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="35133" PGL_stop="41670"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="35133" e_stop="35493"/>
            <exon e_start="40391" e_stop="40640"/>
            <exon e_start="40751" e_stop="40965"/>
            <exon e_start="41259" e_stop="41670"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.696" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35133" e_stop="35493" e_length="361"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="35494" i_stop="40390" i_length="4897"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="40391" e_stop="40640" e_length="250"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.696">
            <gDNA_intron_boundary i_start="40641" i_stop="40750" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="40751" e_stop="40965" e_length="215"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.000">
            <gDNA_intron_boundary i_start="40966" i_stop="41258" i_length="293"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="41259" e_stop="41670" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35133" stop="35493"/>
              <exon start="40391" stop="40640"/>
              <exon start="40751" stop="40965"/>
              <exon start="41259" stop="41670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325775" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGATTATGTATCCAGGAAACTGTTGATTGTGGTTACTCCGACTTATAATAGGGCACTTCAAGCTTACTATCTTCTTAGATTAAGCGAGGTGTTGAAGCTTGTAAAATCACCTCTGTTGTGGGTTGTGGTTGAGATGAATGTGGCGTCTGCAGAGACTGCAGACATTTTGAGGAAGACAGGAGTTATGTATCGCCATCTGGTGTGCTCCAAGAACATGACAGATATAAAAGACCGCGGGGTGCACCAGAGAAATGTTGCATTGGAGCATATTGAACATCATAGGCTCAATGGAATTGTTTACTTTGCAGATGATGATAATATCTACTCACTTGAGTTGTTTGAGAGCATTAGATCGATCAA : TCGTTTTGGCACTTGGCCTGTTGCTATGCTAGCACAAAGCAAAAGTAAAGCAATACTGGAGGGCCCTGTGTGCAATGGAAGTCAAGTTATTGGGTGGCACACCAATGAGAAGAGTAAGCAACTTAGAAGATTTCATGTCGATATGTCTGGTTTTGCCTTCAATAGCACTATATTATGGGATCCAAAGAAATGGCATCGACCAACTTCAGATCCCATACGACAGTTGGACAATGTGAAGGAGGGTTTCCAA : GAGACCACTTTCATAGAACAAATTGTTGAAGACGAAAGCCAAATGGAGGCTGTCCCTCCTGGTTGCTCAAGGGTATTGAATTGGCACCTTCATTTGGAAGCTCACGGAGCTGTCTATCCAGGAGGCTGGCTGCTTCAAAAGAACCTTGATGCCATTATCTCTACCACATGAGAAACACAAGCAAGGTGCAGGAACTCTAAATGGTGTCCATGAAG : GCCAGTGCTAATCCCAGTAGGAAGCTATCATTTTCAAGCTGATCAGGGAATTACTAGATTGCCAAAGTTGAAGCAGCAAGCATGCCTTCAATGTCAAGCTAGCTATAAAGAAAGGAGTGATTCATTTTATTTTTGACTTTCTCGACATTATTCTTTGACAGCATCAGAACTCGTTTTGTTGTGGAGTTTTGCTACTTTTTCCCAAGGAGAGGGATGTGGTTTCTTCAATTTCCATTGCAAAATTGATTGCTACTGCCATCACAGAAGGCGGAATGTGTGCATGTTGTAGAATGGAATGGTTGTGATTATTATCCTCGGAAGCAGGAAGCAAGTGATGCTTAGTTCAAGTTGTAGTCTTTTACTATTGTGTTACTGATGGAATAGTTATCATACAAAATTTGCAGTTTTTTTT</gDNA_template>
            <first_frame> L  I  M  Y  P  G  N  C  *  L  W  L  L  R  L  I  I  G  H  F  K  L  T  I  F  L  D  *  A  R  C  *  S  L  *  N  H  L  C  C  G  L  W  L  R  *  M  W  R  L  Q  R  L  Q  T  F  *  G  R  Q  E  L  C  I  A  I  W  C  A  P  R  T  *  Q  I  *  K  T  A  G  C  T  R  E  M  L  H  W  S  I  L  N  I  I  G  S  M  E  L  F  T  L  Q  M  M  I  I  S  T  H  L  S  C  L  R  A  L  D  R  S   : I  V  L  A  L  G  L  L  L  C  *  H  K  A  K  V  K  Q  Y  W  R  A  L  C  A  M  E  V  K  L  L  G  G  T  P  M  R  R  V  S  N  L  E  D  F  M  S  I  C  L  V  L  P  S  I  A  L  Y  Y  G  I  Q  R  N  G  I  D  Q  L  Q  I  P  Y  D  S  W  T  M  *  R  R  V  S  K :   R  P  L  S  *  N  K  L  L  K  T  K  A  K  W  R  L  S  L  L  V  A  Q  G  Y  *  I  G  T  F  I  W  K  L  T  E  L  S  I  Q  E  A  G  C  F  K  R  T  L  M  P  L  S  L  P  H  E  K  H  K  Q  G  A  G  T  L  N  G  V  H  E   : G  Q  C  *  S  Q  *  E  A  I  I  F  K  L  I  R  E  L  L  D  C  Q  S  *  S  S  K  H  A  F  N  V  K  L  A  I  K  K  G  V  I  H  F  I  F  D  F  L  D  I  I  L  *  Q  H  Q  N  S  F  C  C  G  V  L  L  L  F  P  K  E  R  D  V  V  S  S  I  S  I  A  K  L  I  A  T  A  I  T  E  G  G  M  C  A  C  C  R  M  E  W  L  *  L  L  S  S  E  A  G  S  K  *  C  L  V  Q  V  V  V  F  Y  Y  C  V  T  D  G  I  V  I  I  Q  N  L  Q  F  F   </first_frame>
            <second_frame>  *  L  C  I  Q  E  T  V  D  C  G  Y  S  D  L  *  *  G  T  S  S  L  L  S  S  *  I  K  R  G  V  E  A  C  K  I  T  S  V  V  G  C  G  *  D  E  C  G  V  C  R  D  C  R  H  F  E  E  D  R  S  Y  V  S  P  S  G  V  L  Q  E  H  D  R  Y  K  R  P  R  G  A  P  E  K  C  C  I  G  A  Y  *  T  S  *  A  Q  W  N  C  L  L  C  R  *  *  *  Y  L  L  T  *  V  V  *  E  H  *  I  D  Q  :  S  F  W  H  L  A  C  C  Y  A  S  T  K  Q  K  *  S  N  T  G  G  P  C  V  Q  W  K  S  S  Y  W  V  A  H  Q  *  E  E  *  A  T  *  K  I  S  C  R  Y  V  W  F  C  L  Q  *  H  Y  I  M  G  S  K  E  M  A  S  T  N  F  R  S  H  T  T  V  G  Q  C  E  G  G  F  P   : R  D  H  F  H  R  T  N  C  *  R  R  K  P  N  G  G  C  P  S  W  L  L  K  G  I  E  L  A  P  S  F  G  S  S  R  S  C  L  S  R  R  L  A  A  S  K  E  P  *  C  H  Y  L  Y  H  M  R  N  T  S  K  V  Q  E  L  *  M  V  S  M  K  :  A  S  A  N  P  S  R  K  L  S  F  S  S  *  S  G  N  Y  *  I  A  K  V  E  A  A  S  M  P  S  M  S  S  *  L  *  R  K  E  *  F  I  L  F  L  T  F  S  T  L  F  F  D  S  I  R  T  R  F  V  V  E  F  C  Y  F  F  P  R  R  G  M  W  F  L  Q  F  P  L  Q  N  *  L  L  L  P  S  Q  K  A  E  C  V  H  V  V  E  W  N  G  C  D  Y  Y  P  R  K  Q  E  A  S  D  A  *  F  K  L  *  S  F  T  I  V  L  L  M  E  *  L  S  Y  K  I  C  S  F  F  </second_frame>
            <third_frame>   D  Y  V  S  R  K  L  L  I  V  V  T  P  T  Y  N  R  A  L  Q  A  Y  Y  L  L  R  L  S  E  V  L  K  L  V  K  S  P  L  L  W  V  V  V  E  M  N  V  A  S  A  E  T  A  D  I  L  R  K  T  G  V  M  Y  R  H  L  V  C  S  K  N  M  T  D  I  K  D  R  G  V  H  Q  R  N  V  A  L  E  H  I  E  H  H  R  L  N  G  I  V  Y  F  A  D  D  D  N  I  Y  S  L  E  L  F  E  S  I  R  S  I  N :   R  F  G  T  W  P  V  A  M  L  A  Q  S  K  S  K  A  I  L  E  G  P  V  C  N  G  S  Q  V  I  G  W  H  T  N  E  K  S  K  Q  L  R  R  F  H  V  D  M  S  G  F  A  F  N  S  T  I  L  W  D  P  K  K  W  H  R  P  T  S  D  P  I  R  Q  L  D  N  V  K  E  G  F  Q  :  E  T  T  F  I  E  Q  I  V  E  D  E  S  Q  M  E  A  V  P  P  G  C  S  R  V  L  N  W  H  L  H  L  E  A  H  G  A  V  Y  P  G  G  W  L  L  Q  K  N  L  D  A  I  I  S  T  T  *  E  T  Q  A  R  C  R  N  S  K  W  C  P  *  R :   P  V  L  I  P  V  G  S  Y  H  F  Q  A  D  Q  G  I  T  R  L  P  K  L  K  Q  Q  A  C  L  Q  C  Q  A  S  Y  K  E  R  S  D  S  F  Y  F  *  L  S  R  H  Y  S  L  T  A  S  E  L  V  L  L  W  S  F  A  T  F  S  Q  G  E  G  C  G  F  F  N  F  H  C  K  I  D  C  Y  C  H  H  R  R  R  N  V  C  M  L  *  N  G  M  V  V  I  I  I  L  G  S  R  K  Q  V  M  L  S  S  S  C  S  L  L  L  L  C  Y  *  W  N  S  Y  H  T  K  F  A  V  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35135" stop="35493"/>
                    <exon start="40391" stop="40640"/>
                    <exon start="40751" stop="40921"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYVSRKLLIVVTPTYNRALQAYYLLRLSEVLKLVKSPLLWVVVEMNVASAETADILRKTGVMYRHLVCSKNMTDIKDRGVHQRNVALEHIEHHRLNGIVYFADDDNIYSLELFESIRSINRFGTWPVAMLAQSKSKAILEGPVCNGSQVIGWHTNEKSKQLRRFHVDMSGFAFNSTILWDPKKWHRPTSDPIRQLDNVKEGFQETTFIEQIVEDESQMEAVPPGCSRVLNWHLHLEAHGAVYPGGWLLQKNLDAIISTT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="48716" PGL_stop="43341"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48716" e_stop="48666"/>
            <exon e_start="44723" e_stop="44679"/>
            <exon e_start="44592" e_stop="44509"/>
            <exon e_start="44416" e_stop="44313"/>
            <exon e_start="44014" e_stop="43341"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.167" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="48716" e_stop="48666" e_length="51"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.978">
            <gDNA_intron_boundary i_start="48665" i_stop="44724" i_length="3942"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44723" e_stop="44679" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44678" i_stop="44593" i_length="86"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44592" e_stop="44509" e_length="84"/>
          </exon>
          <intron i_serial="3" don_prob="0.167" acc_prob="1.000">
            <gDNA_intron_boundary i_start="44508" i_stop="44417" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44416" e_stop="44313" e_length="104"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.969">
            <gDNA_intron_boundary i_start="44312" i_stop="44015" i_length="298"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="44014" e_stop="43341" e_length="674"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48716" stop="48666"/>
              <exon start="44723" stop="44679"/>
              <exon start="44592" stop="44509"/>
              <exon start="44416" stop="44313"/>
              <exon start="44014" stop="43341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGCTCTTCATGAGAACAGTGATTCAGGCCATTGACGCGTTTCCTACTCTG : GTTGATTTTGTGATGGAGATACTCTCCAAACTTGTGGTTAGACAG : GTATGGAGGATGCCAAAATTGTGGGTGGGATTCCTAAAATGTGTCTCACAAACACAACCACATTCTTTTCCTGTACTACTACAG : TTGCCACCAGCGCAGCTTGAGAGTGCTCTAAACAAATATGTTAATCTCCGAAGTCCATTGCTTACCTTTGTTAATCAGCCAAATATTAAAACTTCACTCCCTAG : ATCAACCTTGGTACAACTTGGTCTTTTTAATGAGAGTTTGCAGCAATCACATCTCTCATCTACTGTGCATGCCTCAGAGACTAGTGCTTCTGTTCATGGAACAACTCTAACATGACAGTGCACTTTCTTAAAGGAATGCAGTGTAGTAATACACGGCGTGGGCACCAGTGTTACTGCAGCTCCTTATTGCAACAATCTGCTATAAATCTCCAGAGTCTGTAAATTGTGGCTAGTATCTGCGCCCCTTGGAAGTTCGGCTCAATCTGCTGGCGACAAGACGGCTCATGCGATGGCAGTGTCCAAAAGTTTTGAGGAGAAATCTCCCTTTGGAGAATGTACCATAAGACATCAATTTCCCTCGCAGTTCCTTACCAGCTATATGTTTGTAATTCATTATATTTGTGTAATTTTTCTGCCTACAGGCATCAGTTGAGGTGTCTAGGCAACCAATTGGTGCTGTGGGGAGTAGAATAGCTGGTAGGATAGGTTATTTAGAACCTTTTGTATGAGAGGGAGGCAGCTGGAAGTGTGTAATTGTACTGTAGTTTTATAGCCCCATCCCACTTCCCCTTACCCCTCCCCCACTTGCCTCACTTGTGGTCAGAGTAAATGGGTTCAATTAGAGATTACAGAGTAAAGGAAAAAAAAGAACACTTCTCTAGTTTCTTCGAAAA</gDNA_template>
            <first_frame> L  L  F  M  R  T  V  I  Q  A  I  D  A  F  P  T  L  :  V  D  F  V  M  E  I  L  S  K  L  V  V  R  Q  :  V  W  R  M  P  K  L  W  V  G  F  L  K  C  V  S  Q  T  Q  P  H  S  F  P  V  L  L  Q  :  L  P  P  A  Q  L  E  S  A  L  N  K  Y  V  N  L  R  S  P  L  L  T  F  V  N  Q  P  N  I  K  T  S  L  P  R :   S  T  L  V  Q  L  G  L  F  N  E  S  L  Q  Q  S  H  L  S  S  T  V  H  A  S  E  T  S  A  S  V  H  G  T  T  L  T  *  Q  C  T  F  L  K  E  C  S  V  V  I  H  G  V  G  T  S  V  T  A  A  P  Y  C  N  N  L  L  *  I  S  R  V  C  K  L  W  L  V  S  A  P  L  G  S  S  A  Q  S  A  G  D  K  T  A  H  A  M  A  V  S  K  S  F  E  E  K  S  P  F  G  E  C  T  I  R  H  Q  F  P  S  Q  F  L  T  S  Y  M  F  V  I  H  Y  I  C  V  I  F  L  P  T  G  I  S  *  G  V  *  A  T  N  W  C  C  G  E  *  N  S  W  *  D  R  L  F  R  T  F  C  M  R  G  R  Q  L  E  V  C  N  C  T  V  V  L  *  P  H  P  T  S  P  Y  P  S  P  T  C  L  T  C  G  Q  S  K  W  V  Q  L  E  I  T  E  *  R  K  K  K  N  T  S  L  V  S  S  K  </first_frame>
            <second_frame>  C  S  S  *  E  Q  *  F  R  P  L  T  R  F  L  L  W :   L  I  L  *  W  R  Y  S  P  N  L  W  L  D  R :   Y  G  G  C  Q  N  C  G  W  D  S  *  N  V  S  H  K  H  N  H  I  L  F  L  Y  Y  Y  S :   C  H  Q  R  S  L  R  V  L  *  T  N  M  L  I  S  E  V  H  C  L  P  L  L  I  S  Q  I  L  K  L  H  S  L   : D  Q  P  W  Y  N  L  V  F  L  M  R  V  C  S  N  H  I  S  H  L  L  C  M  P  Q  R  L  V  L  L  F  M  E  Q  L  *  H  D  S  A  L  S  *  R  N  A  V  *  *  Y  T  A  W  A  P  V  L  L  Q  L  L  I  A  T  I  C  Y  K  S  P  E  S  V  N  C  G  *  Y  L  R  P  L  E  V  R  L  N  L  L  A  T  R  R  L  M  R  W  Q  C  P  K  V  L  R  R  N  L  P  L  E  N  V  P  *  D  I  N  F  P  R  S  S  L  P  A  I  C  L  *  F  I  I  F  V  *  F  F  C  L  Q  A  S  V  E  V  S  R  Q  P  I  G  A  V  G  S  R  I  A  G  R  I  G  Y  L  E  P  F  V  *  E  G  G  S  W  K  C  V  I  V  L  *  F  Y  S  P  I  P  L  P  L  T  P  P  P  L  A  S  L  V  V  R  V  N  G  F  N  *  R  L  Q  S  K  G  K  K  R  T  L  L  *  F  L  R  K </second_frame>
            <third_frame>   A  L  H  E  N  S  D  S  G  H  *  R  V  S  Y  S   : G  *  F  C  D  G  D  T  L  Q  T  C  G  *  T   : G  M  E  D  A  K  I  V  G  G  I  P  K  M  C  L  T  N  T  T  T  F  F  S  C  T  T  T   : V  A  T  S  A  A  *  E  C  S  K  Q  I  C  *  S  P  K  S  I  A  Y  L  C  *  S  A  K  Y  *  N  F  T  P  *  :  I  N  L  G  T  T  W  S  F  *  *  E  F  A  A  I  T  S  L  I  Y  C  A  C  L  R  D  *  C  F  C  S  W  N  N  S  N  M  T  V  H  F  L  K  G  M  Q  C  S  N  T  R  R  G  H  Q  C  Y  C  S  S  L  L  Q  Q  S  A  I  N  L  Q  S  L  *  I  V  A  S  I  C  A  P  W  K  F  G  S  I  C  W  R  Q  D  G  S  C  D  G  S  V  Q  K  F  *  G  E  I  S  L  W  R  M  Y  H  K  T  S  I  S  L  A  V  P  Y  Q  L  Y  V  C  N  S  L  Y  L  C  N  F  S  A  Y  R  H  Q  L  R  C  L  G  N  Q  L  V  L  W  G  V  E  *  L  V  G  *  V  I  *  N  L  L  Y  E  R  E  A  A  G  S  V  *  L  Y  C  S  F  I  A  P  S  H  F  P  L  P  L  P  H  L  P  H  L  W  S  E  *  M  G  S  I  R  D  Y  R  V  K  E  K  K  E  H  F  S  S  F  F  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48716" stop="48666"/>
                    <exon start="44723" stop="44679"/>
                    <exon start="44592" stop="44509"/>
                    <exon start="44416" stop="44313"/>
                    <exon start="44014" stop="43900"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>396</number_coding_nucleotides>
                  <number_encoded_amino_acids>132</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLFMRTVIQAIDAFPTLVDFVMEILSKLVVRQVWRMPKLWVGFLKCVSQTQPHSFPVLLQLPPAQLESALNKYVNLRSPLLTFVNQPNIKTSLPRSTLVQLGLFNESLQQSHLSSTVHASETSASVHGTTLT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43809" stop="43582"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ISRVCKLWLVSAPLGSSAQSAGDKTAHAMAVSKSFEEKSPFGECTIRHQFPSQFLTSYMFVIHYICVIFLPTGIS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="55369" PGL_stop="50980"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55369" e_stop="55286"/>
            <exon e_start="55214" e_stop="54978"/>
            <exon e_start="54003" e_stop="53956"/>
            <exon e_start="53831" e_stop="53688"/>
            <exon e_start="52075" e_stop="51911"/>
            <exon e_start="51830" e_stop="51768"/>
            <exon e_start="51398" e_stop="51288"/>
            <exon e_start="51199" e_stop="51116"/>
            <exon e_start="51027" e_stop="50980"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.984" e_score="0.988"/>
          <exon-intron don_prob="0.992" acc_prob="0.628" e_score="0.987"/>
          <exon-intron don_prob="0.969" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.817" e_score="1.000"/>
          <exon-intron don_prob="0.794" acc_prob="0.160" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.947" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.858" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="55369" e_stop="55286" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.984">
            <gDNA_intron_boundary i_start="55285" i_stop="55215" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="0.987">
            <gDNA_exon_boundary e_start="55214" e_stop="54978" e_length="237"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.628">
            <gDNA_intron_boundary i_start="54977" i_stop="54004" i_length="974"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54003" e_stop="53956" e_length="48"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.979">
            <gDNA_intron_boundary i_start="53955" i_stop="53832" i_length="124"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53831" e_stop="53688" e_length="144"/>
          </exon>
          <intron i_serial="4" don_prob="0.981" acc_prob="0.817">
            <gDNA_intron_boundary i_start="53687" i_stop="52076" i_length="1612"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="52075" e_stop="51911" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.794" acc_prob="0.160">
            <gDNA_intron_boundary i_start="51910" i_stop="51831" i_length="80"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="51830" e_stop="51768" e_length="63"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="51767" i_stop="51399" i_length="369"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="51398" e_stop="51288" e_length="111"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.947">
            <gDNA_intron_boundary i_start="51287" i_stop="51200" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="0.988">
            <gDNA_exon_boundary e_start="51199" e_stop="51116" e_length="84"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.858">
            <gDNA_intron_boundary i_start="51115" i_stop="51028" i_length="88"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="51027" e_stop="50980" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55369" stop="55286"/>
              <exon start="55214" stop="54978"/>
              <exon start="54003" stop="53956"/>
              <exon start="53831" stop="53688"/>
              <exon start="52075" stop="51911"/>
              <exon start="51830" stop="51768"/>
              <exon start="51398" stop="51288"/>
              <exon start="51199" stop="51116"/>
              <exon start="51027" stop="50980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328739" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTGCATTATCTCATGCTATCGGGTTCGGCTGAAAATATTTCATCTGCTGCTGCTCTATATGAGAAATTCCTCCTCAGTGCG : GCGAAATCATTGCTGGATTCTTTACCAGCAAACGACAAGTCATTTAGTAGGCTCCTTGGTGAAGTTCCATATCTGCCTGAATCTGTGATGAGACTGCTAGTTGATTTATGCTCTGACAATTATCTTGGGAACGATGGTCGTGATGGTGACCGTGTTACTCAGGGCCTTGGTGCAGTTTGGAGTTTAATCTTGGGTCGCCCCCCTAATCGTCAAGCATGCATGGATATAGCTTTGAAG : TGTGCTATTCACCCCCAGGACGAGGTCCGAGCAAAAGCTATTCGCCTG : GTGTCAAACAAACTTTACGTGGTTGGTGACATTTCAGATAATATCGAGCAGTATGCTAAGAATATGTTCTTGTCAGCTGTAAACCAGCATGTCACAGATGCAGAATATTCCCAGTCTGGAACTTTGGTTCAGAGGACAGGAGAG : ACAGGAAATCAGGAAGCGTCAGTTAGTGGTTCTCAGATTTCAGGGCCAGGATTCTTTGAAAATGATTTTGTTAAGACTGCAGCAACTGATTCTCAAAGTGATTCAGAGTTGTCTTTAGCTCAAGCTCAGCGGCTTATCTCATTATTTTTTGCTCTATGCACTAAG : AAATTCAGTCTTCTCCACCTTGTATTTGATACTTATGCACGTGCTCCTAAGGCAGTTAAGCAG : GCTGTTCACCGTCATATGCCTATTCTTATTAGGGCTATAGGCTCTTCATGTTCTGAACTGCTTCGTATAATATCTGATCCACCTCAAGGCTGTGAAAATCTTTTGACACAG : GTGCTTCATATTCTCTCTGAAGGGACAACCCCTCCGCCTGACTTAGTTGCAGTTGTCAAGCGGTTGTATGAAACTAAACTGAAG : GATGCAACTATTCTTATTCCAGTGCTCTCTTCATATTCTAAGAGTGAG</gDNA_template>
            <first_frame> H  L  H  Y  L  M  L  S  G  S  A  E  N  I  S  S  A  A  A  L  Y  E  K  F  L  L  S  A  :  A  K  S  L  L  D  S  L  P  A  N  D  K  S  F  S  R  L  L  G  E  V  P  Y  L  P  E  S  V  M  R  L  L  V  D  L  C  S  D  N  Y  L  G  N  D  G  R  D  G  D  R  V  T  Q  G  L  G  A  V  W  S  L  I  L  G  R  P  P  N  R  Q  A  C  M  D  I  A  L  K  :  C  A  I  H  P  Q  D  E  V  R  A  K  A  I  R  L  :  V  S  N  K  L  Y  V  V  G  D  I  S  D  N  I  E  Q  Y  A  K  N  M  F  L  S  A  V  N  Q  H  V  T  D  A  E  Y  S  Q  S  G  T  L  V  Q  R  T  G  E  :  T  G  N  Q  E  A  S  V  S  G  S  Q  I  S  G  P  G  F  F  E  N  D  F  V  K  T  A  A  T  D  S  Q  S  D  S  E  L  S  L  A  Q  A  Q  R  L  I  S  L  F  F  A  L  C  T  K  :  K  F  S  L  L  H  L  V  F  D  T  Y  A  R  A  P  K  A  V  K  Q  :  A  V  H  R  H  M  P  I  L  I  R  A  I  G  S  S  C  S  E  L  L  R  I  I  S  D  P  P  Q  G  C  E  N  L  L  T  Q  :  V  L  H  I  L  S  E  G  T  T  P  P  P  D  L  V  A  V  V  K  R  L  Y  E  T  K  L  K  :  D  A  T  I  L  I  P  V  L  S  S  Y  S  K  S  E </first_frame>
            <second_frame>  I  C  I  I  S  C  Y  R  V  R  L  K  I  F  H  L  L  L  L  Y  M  R  N  S  S  S  V  R :   R  N  H  C  W  I  L  Y  Q  Q  T  T  S  H  L  V  G  S  L  V  K  F  H  I  C  L  N  L  *  *  D  C  *  L  I  Y  A  L  T  I  I  L  G  T  M  V  V  M  V  T  V  L  L  R  A  L  V  Q  F  G  V  *  S  W  V  A  P  L  I  V  K  H  A  W  I  *  L  *  S :   V  L  F  T  P  R  T  R  S  E  Q  K  L  F  A  W :   C  Q  T  N  F  T  W  L  V  T  F  Q  I  I  S  S  S  M  L  R  I  C  S  C  Q  L  *  T  S  M  S  Q  M  Q  N  I  P  S  L  E  L  W  F  R  G  Q  E  R :   Q  E  I  R  K  R  Q  L  V  V  L  R  F  Q  G  Q  D  S  L  K  M  I  L  L  R  L  Q  Q  L  I  L  K  V  I  Q  S  C  L  *  L  K  L  S  G  L  S  H  Y  F  L  L  Y  A  L  R :   N  S  V  F  S  T  L  Y  L  I  L  M  H  V  L  L  R  Q  L  S  R :   L  F  T  V  I  C  L  F  L  L  G  L  *  A  L  H  V  L  N  C  F  V  *  Y  L  I  H  L  K  A  V  K  I  F  *  H  R :   C  F  I  F  S  L  K  G  Q  P  L  R  L  T  *  L  Q  L  S  S  G  C  M  K  L  N  *  R :   M  Q  L  F  L  F  Q  C  S  L  H  I  L  R  V   </second_frame>
            <third_frame>   F  A  L  S  H  A  I  G  F  G  *  K  Y  F  I  C  C  C  S  I  *  E  I  P  P  Q  C   : G  E  I  I  A  G  F  F  T  S  K  R  Q  V  I  *  *  A  P  W  *  S  S  I  S  A  *  I  C  D  E  T  A  S  *  F  M  L  *  Q  L  S  W  E  R  W  S  *  W  *  P  C  Y  S  G  P  W  C  S  L  E  F  N  L  G  S  P  P  *  S  S  S  M  H  G  Y  S  F  E   : V  C  Y  S  P  P  G  R  G  P  S  K  S  Y  S  P   : G  V  K  Q  T  L  R  G  W  *  H  F  R  *  Y  R  A  V  C  *  E  Y  V  L  V  S  C  K  P  A  C  H  R  C  R  I  F  P  V  W  N  F  G  S  E  D  R  R   : D  R  K  S  G  S  V  S  *  W  F  S  D  F  R  A  R  I  L  *  K  *  F  C  *  D  C  S  N  *  F  S  K  *  F  R  V  V  F  S  S  S  S  A  A  Y  L  I  I  F  C  S  M  H  *   : E  I  Q  S  S  P  P  C  I  *  Y  L  C  T  C  S  *  G  S  *  A   : G  C  S  P  S  Y  A  Y  S  Y  *  G  Y  R  L  F  M  F  *  T  A  S  Y  N  I  *  S  T  S  R  L  *  K  S  F  D  T   : G  A  S  Y  S  L  *  R  D  N  P  S  A  *  L  S  C  S  C  Q  A  V  V  *  N  *  T  E   : G  C  N  Y  S  Y  S  S  A  L  F  I  F  *  E  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55369" stop="55286"/>
                    <exon start="55214" stop="54978"/>
                    <exon start="54003" stop="53956"/>
                    <exon start="53831" stop="53688"/>
                    <exon start="52075" stop="51911"/>
                    <exon start="51830" stop="51768"/>
                    <exon start="51398" stop="51288"/>
                    <exon start="51199" stop="51116"/>
                    <exon start="51027" stop="50980"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>984</number_coding_nucleotides>
                  <number_encoded_amino_acids>328</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLHYLMLSGSAENISSAAALYEKFLLSAAKSLLDSLPANDKSFSRLLGEVPYLPESVMRLLVDLCSDNYLGNDGRDGDRVTQGLGAVWSLILGRPPNRQACMDIALKCAIHPQDEVRAKAIRLVSNKLYVVGDISDNIEQYAKNMFLSAVNQHVTDAEYSQSGTLVQRTGETGNQEASVSGSQISGPGFFENDFVKTAATDSQSDSELSLAQAQRLISLFFALCTKKFSLLHLVFDTYARAPKAVKQAVHRHMPILIRAIGSSCSELLRIISDPPQGCENLLTQVLHILSEGTTPPPDLVAVVKRLYETKLKDATILIPVLSSYSKSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="65457" PGL_stop="66081"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65457" e_stop="66081"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="65457" e_stop="66081" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65457" stop="66081"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATCAAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTTTTTCTGGCAAACTTAAAAAATACTTTTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</gDNA_template>
            <first_frame> K  T  L  L  K  I  R  L  S  G  *  *  E  V  C  Q  C  Y  K  K  *  Q  Y  I  I  K  Q  Y  L  E  V  S  D  T  T  R  L  *  C  R  M  Y  N  L  R  D  Q  N  L  L  N  F  N  V  V  F  E  M  Y  S  A  W  L  I  T  C  P  N  S  S  Y  P  K  W  R  D  K  F  I  H  R  L  I  Y  H  L  S  I  L  W  K  S  A  N  F  Y  I  C  Y  L  N  H  Q  F  S  I  P  S  K  M  P  F  *  L  H  V  K  K  L  G  S  C  C  N  N  S  K  N  K  Q  L  N  L  N  Y  S  H  Y  Q  A  S  V  N  S  P  *  I  Q  S  N  K  S  N  S  S  H  C  Q  N  F  G  V  R  S  L  I  W  L  G  N  M  G  F  T  E  R  L  *  Q  R  I  I  R  V  I  F  S  G  K  L  K  K  Y  F  W  Q  G  S  L  P  *  L  P  V  T  D  R  K  </first_frame>
            <second_frame>  K  P  C  *  K  L  D  Y  L  G  N  K  K  C  V  N  V  T  K  N  S  N  T  L  S  N  N  T  W  K  C  Q  T  L  Q  G  Y  D  A  V  C  T  I  *  E  I  K  I  C  *  T  L  M  L  S  S  K  C  T  V  L  G  *  *  L  V  Q  T  V  L  I  P  N  G  V  T  N  L  S  T  A  *  S  T  I  C  Q  S  C  G  N  Q  L  T  F  T  S  V  I  *  T  I  S  S  A  F  Q  A  K  C  H  F  N  S  T  L  K  S  W  A  H  A  A  I  T  A  K  I  S  S  *  T  *  T  T  A  I  T  K  H  L  S  T  L  H  K  F  K  V  I  N  Q  T  A  V  T  A  K  I  L  E  S  E  V  L  F  G  W  A  I  W  D  L  L  R  G  Y  D  K  G  S  S  E  *  F  F  L  A  N  L  K  N  T  F  G  R  D  H  C  H  N  C  Q  L  L  T  E  N </second_frame>
            <third_frame>   N  P  V  E  N  *  I  I  W  V  I  R  S  V  S  M  L  Q  K  I  A  I  H  Y  Q  T  I  L  G  S  V  R  H  Y  K  V  M  M  P  Y  V  Q  F  K  R  S  K  F  A  K  L  *  C  C  L  R  N  V  Q  C  L  V  N  N  L  S  K  Q  F  L  S  Q  M  A  *  Q  I  Y  P  P  L  N  L  P  S  V  N  L  V  E  I  S  *  L  L  H  L  L  S  E  P  S  V  Q  H  S  K  Q  N  A  I  L  T  P  R  *  K  A  G  L  M  L  Q  *  Q  Q  K  *  A  V  E  L  E  L  Q  P  L  P  S  I  C  Q  L  S  I  N  S  K  *  *  I  K  Q  Q  S  L  P  K  F  W  S  Q  K  S  Y  L  A  G  Q  Y  G  I  Y  *  E  V  M  T  K  D  H  Q  S  N  F  F  W  Q  T  *  K  I  L  L  A  G  I  T  A  I  I  A  S  Y  *  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0110L05.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65571" stop="65795"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRMYNLRDQNLLNFNVVFEMYSAWLITCPNSSYPKWRDKFIHRLIYHLSILWKSANFYICYLNHQFSIPSKMPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 33400 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 4771 bytes was the average size of a spliced alignment
$ 13160 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1880 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:53:47
-->
