<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:19:05"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E266423" ref_strand="-" ref_description="SGN-E266423 [cLEI-3-L13]">
      <seq>agtgccggagaatgtatcaagttctgcgaggaagacaatagaagcccccacagctggtgcaaaggaggaaaagaaaccagcagctacgagtgctgagcaaatgtatgaagcagagttggcgaaattggaatccgagtctggaaacattaaccaggatttcactgcagaagagattggtggctgggaatttgatgaactggaaaatgaattaaattctgggactcgcgcaatccctgaaaagagatagaaatacctaatgataaaactttaagaaatcttctatccatgtctaataatgtttggatgtagtttcatgtatttattctgtgtaaattcgcgaacttgcggaactgcatttcatatcagaatcatgtagaaactttgctaggatgattatatccaaatttgtagtcgactagacccggtaagccaaaaaatattaactcacaggttaattttatttgcgttattcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8720" stop="7644"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8420" g_stop="7945" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7944" i_stop="7796" i_length="149">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7795" g_stop="7780" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="492" r_length="16" r_score="0.500"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E266423" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266423" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="8420" e_stop="7945"/>
          <exon e_start="7795" e_stop="7780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCGAGTCTGGAAACATTAACCAGGATTTCACTGCAGAAGAGATTGGTGGCTGGGAATTTGATGAACTGGAAAATGAATTAAATTCTGGGACTCGCGCAATCCCTGAAAAGAGATAGAAATACCTAATGATAAAACTTTAAGAAATCTTCTATCCATGTCTAATAATGTTTGGATGTAGTTTCATGTATTTATTCTGTGTAAATTCGCGAACTTGCGGAACTGCATTTCATATCAGAATCATGTAGAAACTTTGCTAGGATGATTATATCCAAATTTGTAGTCGACTAGACCCGGTAAGCCAAAAAATATTAACTCACAGGTTAATTTTATTTGCGTTATTCTTAGATTTTACGTTATCAGTCTCCTATTTGATGACTTTATCTAAAAGTTATTATTTTGTCTGCATTTTTCCTCCTTTCTTTTTTCTTTTGATCTGGTGTGTTATTTTATGCCGTTTAGTAAGCATGCATATTTTGCTGCATCATATTATACAGAAAATGATGAGTAGGA</genome_strand>
        <mrna_strand>AGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCGAGTCTGGAAACATTAACCAGGATTTCACTGCAGAAGAGATTGGTGGCTGGGAATTTGATGAACTGGAAAATGAATTAAATTCTGGGACTCGCGCAATCCCTGAAAAGAGATAGAAATACCTAATGATAAAACTTTAAGAAATCTTCTATCCATGTCTAATAATGTTTGGATGTAGTTTCATGTATTTATTCTGTGTAAATTCGCGAACTTGCGGAACTGCATTTCATATCAGAATCATGTAGAAACTTTGCTAGGATGATTATATCCAAATTTGTAGTCGACTAGACCCGGTAAGCCAAAAAATATTAACTCACAGGTTAATTTTATTTGCGTTATTCTTAA.....................................................................................................................................................AAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377683" ref_strand="+" ref_description="SGN-E377683 [TUS-20-C12](-)">
      <seq>aggcaacagaagcccctgaaactggggacgaatgaggaaaacaaaccaccttctaccaaagcagagaatgtgtctaacgctgcacccaataaagtgccggagaatgtatcaagttctgcgaggaagacaatagaagcccccacagctggtgcaaaggaggaaaagaaaccagcagctacgagtgctgagcaaatgtatgaagcagagttggcgaaattggaatccgagtctggaaacattaaccaggatttcactgcagaagagattggtggctgggaatttgatgaactggaaaatgaattaaattctgggactcgcgcaatccctgaaaagagatagaaatacctaatgataaaactttaagaaatcttctatccatgtctaataatgtttggatgtagtttcatgtatttattctgtgtaaattcgcgaacttgcggaactgcatttcatatcagaatcatgtagaaactttgctaggatgattatatccaaatttgtagtcgactagacccggtaagccaaaaaatattaactcacaggttaattttatttgcgttattcttagattttaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="8811" stop="7639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8511" g_stop="7938" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="575" r_length="575" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7937" i_stop="7796" i_length="142">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.929" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7795" g_stop="7785" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="576" r_stop="586" r_length="11" r_score="0.545"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E377683" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8511" e_stop="7938"/>
          <exon e_start="7795" e_stop="7785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCAACAGAAGCCCCTGAAACT-GGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCGAGTCTGGAAACATTAACCAGGATTTCACTGCAGAAGAGATTGGTGGCTGGGAATTTGATGAACTGGAAAATGAATTAAATTCTGGGACTCGCGCAATCCCTGAAAAGAGATAGAAATACCTAATGATAAAACTTTAAGAAATCTTCTATCCATGTCTAATAATGTTTGGATGTAGTTTCATGTATTTATTCTGTGTAAATTCGCGAACTTGCGGAACTGCATTTCATATCAGAATCATGTAGAAACTTTGCTAGGATGATTATATCCAAATTTGTAGTCGACTAGACCCGGTAAGCCAAAAAATATTAACTCACAGGTTAATTTTATTTGCGTTATTCTTAGATTTTACGTTATCAGTCTCCTATTTGATGACTTTATCTAAAAGTTATTATTTTGTCTGCATTTTTCCTCCTTTCTTTTTTCTTTTGATCTGGTGTGTTATTTTATGCCGTTTAGTAAGCATGCATATTTTGCTGCATCATATTATACAGAAAATGATGAG</genome_strand>
        <mrna_strand>AGGCAACAGAAGCCCCTGAAACTGGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCGAGTCTGGAAACATTAACCAGGATTTCACTGCAGAAGAGATTGGTGGCTGGGAATTTGATGAACTGGAAAATGAATTAAATTCTGGGACTCGCGCAATCCCTGAAAAGAGATAGAAATACCTAATGATAAAACTTTAAGAAATCTTCTATCCATGTCTAATAATGTTTGGATGTAGTTTCATGTATTTATTCTGTGTAAATTCGCGAACTTGCGGAACTGCATTTCATATCAGAATCATGTAGAAACTTTGCTAGGATGATTATATCCAAATTTGTAGTCGACTAGACCCGGTAAGCCAAAAAATATTAACTCACAGGTTAATTTTATTTGCGTTATTCTTAGATTTTAA..............................................................................................................................................AAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E238482" ref_strand="+" ref_description="SGN-E238482 [cLED-17-I1]">
      <seq>tcaaaagcattgagccctaggaaaagtctggagttggagtacctggactatgaagccaagattataaccacctttagcgtagtcgacaacatgatggagcagttctatgctcaacacgggaaagtatccaggaaagatgatccaaagattaaagggctgtttgagaacattgaaaaattacgagaagaatttgaatctattgagagaccggaactggaaatggagatcccggatgcccccacccaagagggagatgcttcatctcataatattcctgatgaaaataaatcagatcccgcaaggaaggcaacagaagcccctgaaactgggacgaatgaggaaaacaaaccaccttctaccaaagcagagaatgtgtctaacgctgcacccaataaagtgccggagaatgtatcaagttctgcgaggaagacaatagaagcccccacagctggtgcaaaggaggaaaagaaaccagcagctacgagtgctgagcaaatgtatgaagcagagttggcgaaattggaatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="9675" stop="7987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9375" g_stop="9316" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8845" g_stop="8775" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="131" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8684" g_stop="8287" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="529" r_length="398" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E238482" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238482" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9375" e_stop="9316"/>
          <exon e_start="8845" e_stop="8775"/>
          <exon e_start="8684" e_stop="8287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAGGTAAAAATTGACCGCTCAAAACCAATCTGATGAACATCATGAAATTGGTATTCCTTTTGAGTTACGAGCTTTAATGTGCCTCCACTCTTTCTGTCCAAGACCTAAACTTAGTGGAGGTCTTGCTCCTTAGTTTGTGATTAGTGTTGAATATTATAACAAGTGTCTTTCTAGTTTCGAGCAGCTAGACTTTATACTCAATTGATATTTTATGCTTGTGGTACCATCCTAATCTCTGAGGCTTGAAGCTGGTGATCTTCACCTTCCCCTCGTTTATGAGTTGGAAACCTTCTTTATCCTTCCAAATAACACTTAATCCTTTCTGCTTTTATGCTTCAATATCGAACTATTTAACGTTGAAAAGAACCCAGTACAGAGGCCAGTTGTTTGGTTCGGTCCCCCCTTTTACTTTCTTCCAATTGTCTTGCAATATCAAGCATGATTCCTAAGGTATATGTCTCATGGTAGTGCAGATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAGGTTTGCTTGATGCTTTTACTGTTTCCGATAGCTTTTATTGGATACCAAGCTCCATCAAGTGATATATATACATGTTTTCTTTTCACTCAGGAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCG</genome_strand>
        <mrna_strand>TCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG..........................................................................................GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E233038" ref_strand="+" ref_description="SGN-E233038 [cLED-6-G9]">
      <seq>tgaattggaaaagcatgaggattattttgtgaacttggtcttgcaacttctctctgattacgagaaagagttgaggccttcaattgaccgtattagaaaatatgtggaaaatttgaagagtttaggtgaaggctcagcaaaagaagctggtctgtcttccggtgaatcaaaagcattgagccctaggaaaagtctggagttggagtacctggactatgaagccaagattataaccacctttagcgtagtcgacaacatgatggagcagttctatgctcaacacgggaaagtatccaggaaagatgatccaaagattaaagggctgtttgagaacattgaaaaattacgagaagaatttgaatctattgagagaccggaactggaaatggagatcccggatgcccccacccaagagggagatgcttcatctcataatattcctgatgaaaataaatcagatcccgcaaggaaggcaacagaagcccctgaaactgggacgaatgaggaaaacaaaccaccttctaccaaagcaagagatgtgtctaacgctgcacccaataaagtgccggagaatgtatcaagttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10011" stop="8095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9711" g_stop="9648" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9558" g_stop="9491" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="132" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9490" i_stop="9410" i_length="81">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9409" g_stop="9316" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="226" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8845" g_stop="8775" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="297" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8684" g_stop="8395" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="587" r_length="290" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E233038" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9711" e_stop="9648"/>
          <exon e_start="9558" e_stop="9491"/>
          <exon e_start="9409" e_stop="9316"/>
          <exon e_start="8845" e_stop="8775"/>
          <exon e_start="8684" e_stop="8395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAGGTACTTGTTTGAGAAAGTATTTTATGTCGTCCTTTTTTCTGAAAAAATATTTGGAGCAACTCTTTATCTATTATGTGTTGCTTGCACAGAAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGGGTAAGGCCTTTCTTTGGATTCATAAGCCTGCACATTTTTCTGCTCACGTTCTTAATTGTCTATTTTGTTTTCATATAGCAGCTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAGGTAAAAATTGACCGCTCAAAACCAATCTGATGAACATCATGAAATTGGTATTCCTTTTGAGTTACGAGCTTTAATGTGCCTCCACTCTTTCTGTCCAAGACCTAAACTTAGTGGAGGTCTTGCTCCTTAGTTTGTGATTAGTGTTGAATATTATAACAAGTGTCTTTCTAGTTTCGAGCAGCTAGACTTTATACTCAATTGATATTTTATGCTTGTGGTACCATCCTAATCTCTGAGGCTTGAAGCTGGTGATCTTCACCTTCCCCTCGTTTATGAGTTGGAAACCTTCTTTATCCTTCCAAATAACACTTAATCCTTTCTGCTTTTATGCTTCAATATCGAACTATTTAACGTTGAAAAGAACCCAGTACAGAGGCCAGTTGTTTGGTTCGGTCCCCCCTTTTACTTTCTTCCAATTGTCTTGCAATATCAAGCATGATTCCTAAGGTATATGTCTCATGGTAGTGCAGATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAGGTTTGCTTGATGCTTTTACTGTTTCCGATAGCTTTTATTGGATACCAAGCTCCATCAAGTGATATATATACATGTTTTCTTTTCACTCAGGAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTG</genome_strand>
        <mrna_strand>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG.........................................................................................AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG.................................................................................CTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG..........................................................................................GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAAGAGATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E235703" ref_strand="+" ref_description="SGN-E235703 [cLED-15-P21]">
      <seq>tgaattggaaaagcatgaggattattttgtgaacttggtcttgcaacttctctctgattacgagaaagagttgaggccttcaattgaccgtattagaaaatatgtggaaaatttgaagagtttaggtgaaggctcagcaaaagaagctggtctgtcttccggtgaatcaaaagcattgagccctaggaaaagtctggagttggagtacctggactatgaagccaagattataaccacctttagcgtagtcgacaacatgatggagcagttctatgctcaacacgggaaagtatccaggaaagatgatccaaagattaaagggctgtttgagaacattgaaaaattacgagaagaatttgaatctattgagagaccggaactggaaatggagatcccggatgcccccacccaagagggagatgcttcatctcataatattcctgatgaaaataaatcagatcccgcaaggaaggcaacagaagcccctgaaactgggacgaatgaggaaaacaaaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10011" stop="8164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9711" g_stop="9648" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9558" g_stop="9491" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="132" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9490" i_stop="9410" i_length="81">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9409" g_stop="9316" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="226" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8845" g_stop="8775" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="297" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8684" g_stop="8464" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="518" r_length="221" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E235703" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9711" e_stop="9648"/>
          <exon e_start="9558" e_stop="9491"/>
          <exon e_start="9409" e_stop="9316"/>
          <exon e_start="8845" e_stop="8775"/>
          <exon e_start="8684" e_stop="8464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAGGTACTTGTTTGAGAAAGTATTTTATGTCGTCCTTTTTTCTGAAAAAATATTTGGAGCAACTCTTTATCTATTATGTGTTGCTTGCACAGAAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGGGTAAGGCCTTTCTTTGGATTCATAAGCCTGCACATTTTTCTGCTCACGTTCTTAATTGTCTATTTTGTTTTCATATAGCAGCTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAGGTAAAAATTGACCGCTCAAAACCAATCTGATGAACATCATGAAATTGGTATTCCTTTTGAGTTACGAGCTTTAATGTGCCTCCACTCTTTCTGTCCAAGACCTAAACTTAGTGGAGGTCTTGCTCCTTAGTTTGTGATTAGTGTTGAATATTATAACAAGTGTCTTTCTAGTTTCGAGCAGCTAGACTTTATACTCAATTGATATTTTATGCTTGTGGTACCATCCTAATCTCTGAGGCTTGAAGCTGGTGATCTTCACCTTCCCCTCGTTTATGAGTTGGAAACCTTCTTTATCCTTCCAAATAACACTTAATCCTTTCTGCTTTTATGCTTCAATATCGAACTATTTAACGTTGAAAAGAACCCAGTACAGAGGCCAGTTGTTTGGTTCGGTCCCCCCTTTTACTTTCTTCCAATTGTCTTGCAATATCAAGCATGATTCCTAAGGTATATGTCTCATGGTAGTGCAGATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAGGTTTGCTTGATGCTTTTACTGTTTCCGATAGCTTTTATTGGATACCAAGCTCCATCAAGTGATATATATACATGTTTTCTTTTCACTCAGGAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCAC</genome_strand>
        <mrna_strand>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG.........................................................................................AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG.................................................................................CTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG..........................................................................................GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377684" ref_strand="+" ref_description="SGN-E377684 [TUS-20-C12]">
      <seq>tgaattggaaaagcatgaggattattttgtgaacttggtcttgcaacttctctctgattacgagaaagagttgaggccttcaattgaccgtattagaaaatatgtggaaaatttgaagagtttaggtgaaggctcagcaaaagaagctggtctgtcttccggtgaatcaaaagcattgagccctaggaaaagtctggagttggagtacctggactatgaagccaagattataaccacctttagcgtagtcgacaacatgatggagcagttctatgctcaacacgggaaagtatccaggaaagatgatccaaagattaaagggctgtttgagaacattgaaaaattacgagaagaatttgaatctattgagagaccggaactggaaatggagatcccggatgcccccacccaagagggagatgcttcatctcataatattcctgatgaaaataaatcagatccccgcagggaggcaacagaagcccctgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10011" stop="8190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9711" g_stop="9648" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9558" g_stop="9491" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="132" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9490" i_stop="9410" i_length="81">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9409" g_stop="9316" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="226" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8845" g_stop="8775" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="297" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8684" g_stop="8490" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="492" r_length="195" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E377684" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E377684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9711" e_stop="9648"/>
          <exon e_start="9558" e_stop="9491"/>
          <exon e_start="9409" e_stop="9316"/>
          <exon e_start="8845" e_stop="8775"/>
          <exon e_start="8684" e_stop="8490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAGGTACTTGTTTGAGAAAGTATTTTATGTCGTCCTTTTTTCTGAAAAAATATTTGGAGCAACTCTTTATCTATTATGTGTTGCTTGCACAGAAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGGGTAAGGCCTTTCTTTGGATTCATAAGCCTGCACATTTTTCTGCTCACGTTCTTAATTGTCTATTTTGTTTTCATATAGCAGCTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAGGTAAAAATTGACCGCTCAAAACCAATCTGATGAACATCATGAAATTGGTATTCCTTTTGAGTTACGAGCTTTAATGTGCCTCCACTCTTTCTGTCCAAGACCTAAACTTAGTGGAGGTCTTGCTCCTTAGTTTGTGATTAGTGTTGAATATTATAACAAGTGTCTTTCTAGTTTCGAGCAGCTAGACTTTATACTCAATTGATATTTTATGCTTGTGGTACCATCCTAATCTCTGAGGCTTGAAGCTGGTGATCTTCACCTTCCCCTCGTTTATGAGTTGGAAACCTTCTTTATCCTTCCAAATAACACTTAATCCTTTCTGCTTTTATGCTTCAATATCGAACTATTTAACGTTGAAAAGAACCCAGTACAGAGGCCAGTTGTTTGGTTCGGTCCCCCCTTTTACTTTCTTCCAATTGTCTTGCAATATCAAGCATGATTCCTAAGGTATATGTCTCATGGTAGTGCAGATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAGGTTTGCTTGATGCTTTTACTGTTTCCGATAGCTTTTATTGGATACCAAGCTCCATCAAGTGATATATATACATGTTTTCTTTTCACTCAGGAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAAC</genome_strand>
        <mrna_strand>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG.........................................................................................AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG.................................................................................CTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG..........................................................................................GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCCGCAGGGAGGCAACAGAAGCCCCTGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E241392" ref_strand="+" ref_description="SGN-E241392 [cLED-28-N3]">
      <seq>gttagttcatggatcaaatttttggaggatgcttgggttcttcagtcttcctatacagagaccaaagacaaggaggccaaagttgaattggaaaagcatgaggattattttgtgaacttggtcttgcaacttctctctgattacgagaaagagttgaggccttcaattgaccgtattagaaaatatgtggaaaatttgaagagtttaggtgaaggcagctcagcaaaagaagctggtctgtcttccggtgaatcaaaagcattgagccctaggaaaagtctggagttggagtacctggactatgaagccaagattataaccacctttagcgtagtcgacaacatgatggagcagttctatgctcaacacgggaaagtatccaggaaagatgatccaaagattaaagggctgtttgagaacattgaaaaattacgagaagaatttgaatctattgagagaccggaactggaaatggagatcccggatgcccccacccaagagggagatgcttcatctcataatattcctgatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10245" stop="8232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9945" g_stop="9866" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9865" i_stop="9715" i_length="151">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9714" g_stop="9648" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="147" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9558" g_stop="9491" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="215" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9490" i_stop="9413" i_length="78">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9412" g_stop="9316" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="312" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.702" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="8845" g_stop="8775" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="383" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.977" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="8684" g_stop="8532" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="536" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E241392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9945" e_stop="9866"/>
          <exon e_start="9714" e_stop="9648"/>
          <exon e_start="9558" e_stop="9491"/>
          <exon e_start="9412" e_stop="9316"/>
          <exon e_start="8845" e_stop="8775"/>
          <exon e_start="8684" e_stop="8532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTCATGGATCAAATTTTTGGAGGATGCTTGGGTTCTTCAGTCTTCCTATACAGAGACCAAAGACAAGGAGGCCAAGTATGTTACAGGATTTACCACATGATCATTCTTCCAAATTTCAGAAAAGAACCTTTTTACTTCACCTAATATTATAGTTTGTCTAAATGGTGACACTTGGAACTTGGTAGTTTTTCTTTTTGGTAATTGTTGCTGTCTTGTGTTCTTCTAGAGTTGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAGGTACTTGTTTGAGAAAGTATTTTATGTCGTCCTTTTTTCTGAAAAAATATTTGGAGCAACTCTTTATCTATTATGTGTTGCTTGCACAGAAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGGGTAAGGCCTTTCTTTGGATTCATAAGCCTGCACATTTTTCTGCTCACGTTCTTAATTGTCTATTTTGTTTTCATATAGCAGCTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAGGTAAAAATTGACCGCTCAAAACCAATCTGATGAACATCATGAAATTGGTATTCCTTTTGAGTTACGAGCTTTAATGTGCCTCCACTCTTTCTGTCCAAGACCTAAACTTAGTGGAGGTCTTGCTCCTTAGTTTGTGATTAGTGTTGAATATTATAACAAGTGTCTTTCTAGTTTCGAGCAGCTAGACTTTATACTCAATTGATATTTTATGCTTGTGGTACCATCCTAATCTCTGAGGCTTGAAGCTGGTGATCTTCACCTTCCCCTCGTTTATGAGTTGGAAACCTTCTTTATCCTTCCAAATAACACTTAATCCTTTCTGCTTTTATGCTTCAATATCGAACTATTTAACGTTGAAAAGAACCCAGTACAGAGGCCAGTTGTTTGGTTCGGTCCCCCCTTTTACTTTCTTCCAATTGTCTTGCAATATCAAGCATGATTCCTAAGGTATATGTCTCATGGTAGTGCAGATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAGGTTTGCTTGATGCTTTTACTGTTTCCGATAGCTTTTATTGGATACCAAGCTCCATCAAGTGATATATATACATGTTTTCTTTTCACTCAGGAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAA</genome_strand>
        <mrna_strand>GTTAGTTCATGGATCAAATTTTTGGAGGATGCTTGGGTTCTTCAGTCTTCCTATACAGAGACCAAAGACAAGGAGGCCAA.......................................................................................................................................................AGTTGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG.........................................................................................AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG..............................................................................CAGCTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG..........................................................................................GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E239957" ref_strand="+" ref_description="SGN-E239957 [cLED-29-F21]">
      <seq>gttagttcatggatcaaatttttggaggatgcttgggttcttcagtcttcctatacagagaccaaagacaaggaggccaaagttgaattggaaaagcatgaggattattttgtgaacttggtcttgcaacttctctctgattacgagaaagagttgaggccttcaattgaccgtattagaaaatatgtggaaaatttgaagagtttaggtgaaggcagctcagcaaaagaagctggtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="10245" stop="9089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9945" g_stop="9866" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9865" i_stop="9715" i_length="151">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9714" g_stop="9648" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="147" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9558" g_stop="9491" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="215" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9490" i_stop="9413" i_length="78">
            <donor d_prob="0.734" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9412" g_stop="9389" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="239" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E239957" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>239</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9945" e_stop="9866"/>
          <exon e_start="9714" e_stop="9648"/>
          <exon e_start="9558" e_stop="9491"/>
          <exon e_start="9412" e_stop="9389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTCATGGATCAAATTTTTGGAGGATGCTTGGGTTCTTCAGTCTTCCTATACAGAGACCAAAGACAAGGAGGCCAAGTATGTTACAGGATTTACCACATGATCATTCTTCCAAATTTCAGAAAAGAACCTTTTTACTTCACCTAATATTATAGTTTGTCTAAATGGTGACACTTGGAACTTGGTAGTTTTTCTTTTTGGTAATTGTTGCTGTCTTGTGTTCTTCTAGAGTTGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAGGTACTTGTTTGAGAAAGTATTTTATGTCGTCCTTTTTTCTGAAAAAATATTTGGAGCAACTCTTTATCTATTATGTGTTGCTTGCACAGAAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGGGTAAGGCCTTTCTTTGGATTCATAAGCCTGCACATTTTTCTGCTCACGTTCTTAATTGTCTATTTTGTTTTCATATAGCAGCTCAGCAAAAGAAGCTGGTCT</genome_strand>
        <mrna_strand>GTTAGTTCATGGATCAAATTTTTGGAGGATGCTTGGGTTCTTCAGTCTTCCTATACAGAGACCAAAGACAAGGAGGCCAA.......................................................................................................................................................AGTTGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG.........................................................................................AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG..............................................................................CAGCTCAGCAAAAGAAGCTGGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257906" ref_strand="+" ref_description="SGN-E257906 [cLEG-39-N12]">
      <seq>tgaaatctaatgcagatctcggaagaattgatgccgaagtctctacattgaataaacaacttgatgaaataaaagcagtaaaggacgcaagtggggatcatgaaacaatatccaaagagactgcggcttcaatagaggcactgaaagtagcacttgctcatattcgggtctgttccagattagaagggcttctactgaagaaaaaatctcttaaatacggggactctccggaagtccattctcaaaaggttgataagttgaaactcctatccgaatctcttgttagatccgccaacaaagctgaaaaggagatctcagatgacagaattcagaaagaggaggcactaaaatttcgtgttgccaagaccagtgaagtgggtgaaatagaaaaggaattagcagctgagatctcagctcttgagaaacaaaggaatgaaattgaagctcaactgaagcaggtcaatatctccttggcagcagctagtgcacgccttcataatgcccgagaagagagggaccaattctatgacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="17076" stop="9868"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16752" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16751" i_stop="15876" i_length="876">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15875" g_stop="15764" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="137" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15763" i_stop="14462" i_length="1302">
            <donor d_prob="0.450" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14461" g_stop="14351" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="248" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="14350" i_stop="13468" i_length="883">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.500" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13467" g_stop="13391" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="325" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13390" i_stop="12033" i_length="1358">
            <donor d_prob="0.867" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12032" g_stop="11966" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="392" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11965" i_stop="11608" i_length="358">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11607" g_stop="11542" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="458" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="11541" i_stop="10242" i_length="1300">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="10241" g_stop="10168" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="532" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E257906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16752"/>
          <exon e_start="15875" e_stop="15764"/>
          <exon e_start="14461" e_stop="14351"/>
          <exon e_start="13467" e_stop="13391"/>
          <exon e_start="12032" e_stop="11966"/>
          <exon e_start="11607" e_stop="11542"/>
          <exon e_start="10241" e_stop="10168"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATCTAATGCAGATCTCGGAAGGTATTACTTCTTATAACACCTAAAATTTTGACATCTTTTTTATATGAACCCCAGGGTTGGAGCGAATTATTTTGAAGTGGAATTTCCTTCTTGTTTTCAGAGCTTTTGGTGCTTAGTTTCCTTTTTCTTAGTGGACGAGTAACTGCATATTATCTTATGATAAGTAAGTGCATCTTATTAAGTCGAGTGACAGGAAAGCTCCTGCTAACTTAATTAATTTAGGATGGGAAGAAACAACAATAAATTTAAACATGACGTTTGTCACCTTTGAAAGAAATGTATTTTTAAACATGAGCTATCTTATTTCCTTCTGATTCCTTCTATGTAAATGAAATGATAGTTGTAGAGCCTTCCAAGAGTGAAAAAAGGGATTCATATATTATCAAAAGACATATCCCTTTAGTGTTAAGTTTTGGAGCCTTTCACTTTGTTTTTTTTTAAAAAAGAAAATTATGATATGGTAGGTATAGCAGAGGTAGCCAGTCCTTGAAACCTGATCTAGAAATCATTTGAGACTTTTGTGATCTTAAATTTGTTTATGATCTAATTTTTTCCTAGACATGCCATTTATGTAAAAGACAGCTCATTTCAAGGACCTTCTTATCAAGCAAAGAATTCATTTTGACCAGTTTAAAACAATTATTAATGATGGTAAAATACAGGTCACATGTTTGATATTCTACCATTTTAAAAAAATATGCTTTTGTTACGTGGGGGAAGGGGATGCCACTTGTGATGTTCGAATCTTTCACTTACTTTTGAAGTTGAGGGTGCTTGCAAGTTAGCTACCACTCAACCCCTTGATATTGTTCCATCGATATCTGCTTTTGGCCTAAGGTTTTTGTTTTGGTTGTAATAAATGCTTTCCACCTGCAGAATTGATGCCGAAGTCTCTACATTGAATAAACAACTTGATGAAATAAAAGCAGTAAAGGACGCAAGTGGGGATCATGAAACAATATCCAAAGAGACTGCGGCTTCAATAGAGGTGAACCAGATTGGTGCTATATTTTTTCCTTTTGTTGCTCCATCTACTGTATTTTATTAGGCACAATCAATCTGGCTTGGGACTAAGAAGTTGAATTTGAACACATGTTATATAAGAGGTAGAATGAGAAACATTTTAGTGGTTAAAGCTAAAGTTATCGATGAATTACGCATCATGATTTAACCTTAAATTGTTAAATGAATTTTGATGAAAGTCTTATTAGATGTTGTTACACAGAAATGCAACCTCCTCTCTAGGAGGTGTGCTCTCTTGGCTAGCTGCTAGAGGGGTGATTTTGGCAGCGCATAATCTGAGAAATGCAAGGTTGGTGTTATATGTGCAAGGAGGTGGGTGAGGACATGCATCTTCTTATACATAGCGAACTTACCATGAGGTTATTGTGGGGGACACGGTTCAGCGGTTTAGGATTTCTTGGGCAATGCCAAAAACTGTGAAAGATTTGATGTCTTTGTTGGAGGAGCTGGAGGAGGAGACGTAGGGCATGGAACGTGGTTCCTCTAACGATGATGTGGGTTGTTTGGACTTTGGAGAGAGAGAGAAATAGGAGAGCTTCTGAGTGGATAGAGTCGAGTTTTATTCAGTTGAGGAGTAGTCTCTAGTCACTTATTTTCTTTTGGTGCACCCATAAAGTTCTATGTGGTGGGAGTTTGTAGAGAATCACGTCTTTTTGTAGATCATTTGCTTTTTGGTATACCCATTGTAGACGGACAGATTTTTGGCCATTATGAATGAATTGCAGTTACCTGATGAAAATAATAAAAGAAAATGTTGTTTCTTGAATGAAAAAACCGGAATGGATCTGGTAAAGTGGTGCTTTACATATGTTAGTATTTACATAATTGGTTCATTTATAAAATGGAAATGTTCTTCAGGCAATCCTCTCCATTTATATCCATATCATAAATCTGATCAGTCGTTCAGAATTTCCAAAAGTTTACATGTTTTTATTTTTCATTGTAGTGTTTGGTCATGGCAAGTGATACATGAAGTTACTGCATGAGACTCATTTTCCATTGCATCAGGAATGGACTTCTATACTTGAAATAATTTATACATAAGTGTATTAAACTTACCACAAACATATATTTCTCAAAACCTTGTTATTTTATGAATTAGCTTTTTGAAGATGGATGTTGCATTAGGGACTTTCATTAATCTAGCATGATAAGAGACCAAAATGAATGAAATTTTCCTAACACTGCATATATTAGGCCAACCTACTTGTCTTTTGTAATTAGAAGTTTATGACATAGTTGAATGACCATTGTATTTTTCCAATAGGCACTGAAAGTAGCACTTGCTCATATTCGGGTCTGTTCCAGATTAGAAGGGCTTCTACTGAAGAAAAAATCTCTTAAATACGGGGACTCTCCGGAAGTCCATTCTCAAAAGGTATATTATCCCGTTAAGTTTGATCTGATCATGTTTATTTTCTGAAAAAAAGGCCTGATCTCCCTTTTTGGGGTGAATCATACTTCTTTTTTGCTTCATATGTTGCCTGTCAAAAACTCGATATATCATATATGTGATGTGCATTAGTGTTTTCAAGTCTCTGAAGTATTTGCCCCAAGGTGATATTGTCTGCCTGCTTATTTTTATGCCTTGGGTTGTCCGTCTCGTATGTTTTGAAATATTTCTTCTTAAATTTTCTTTTGAATATTTGATTAGTACTTAATTTTTTTTCTAATTTAGTGTTCATTGGCTTCGATATTGTATGGACCTAGATATCTTTAAGCTCAAACTCACGATCGACTCTTTTGTAAAGCATGCCATTGTCCGACTTGGCGGAGTTTACCATATTTCAAATTCTTACTACGAGTTTCTGGTTTCATTGAATCTTTCCTTTTCTTTTCCTTTGGGATTAGTGTTCTACACTTTTTTGATGAAGAGCGTAGTATTCTACTGAGTCTGTGCTACTCCTACAACTATATTTTGTGAAATAGCTGCTTTGCTTCTTCCCTTACTACTTGTTGGGATAGAGTATGGTGGATATCAAGACAGATCTTTTCAGTTGTTAAATCAATCTTTTCACTTTGTTTTATGTGCCAATATGCTTGAAAGTGTAAGGTCGGCATGTCCCAGTTCCTTTAGTTCTCTGAAAGCATTATTCTTCTGATAATTTGTTTTTAACTAAATTTTATCAACACAAAGATCAGTGGACCTTATTAAAAAAAGACCAGTGTAATTGATGAGGCTAGCAAATATCCATCCCTCTACACAAATACTAGGTGCTTTGCATCTTCCACAAGATTCAAGCAATATTCAACTATTGCAGGTTGATAAGTTGAAACTCCTATCCGAATCTCTTGTTAGATCCGCCAACAAAGCTGAAAAGGAGATCTCAGATGACAGGTTAAAACTGCACATTTCAATCTCTGTCTGTGACTTGTTTAAAGTTGACAAAGCTGCAAGTTATTTGATTAGTCACTTACAAGGCCAAGACCTTGGCCTCATATATGTTTCTTTTATAATTTTTCATCTTTTATTTACTCAAAATTTGTTATGATGGTGGTGTCTTGGCCAGCTTGCGTGCACACTTCCGATCAGCATAGGTACCAAACAACTCTGTCCACCAAGGCTTAGGCATATGAGAATAAAAACCCCAATTACTTTTTGCCTCCACTGGGTTGGAACCTGCGACCTCATTGTTCTCTTCCCATTCCATTGATCACTTGGCCATACCCTTGGCGCAAACCTTTTTTATCTTTTATTTGTATTGCATTGGGTATAATTGCAGGGGCAACTCTCCCTGAAGTACATGGGAGGTGAATGGAAAGTGCTTGATTCTTGAGTACAATTTAGATCCTTTATACCCCTAAAAAGAACCTTTGTATCACCATCTCTGATACATTTATAGATAAAGCGCAATGGCCTCATTTTTGTGAAATTTCTTGGGTTTTCTGCTTGGGGAATTGATATCAAGTTAGCATGGTTCTGTTTAAGTTTATTTAATAATTTGGAACGACCACTTTCAGTAAGCATGACTAATAACATCATTTATACTGGGGAAATATCTGCATCTTGGTTAAAACATTTATTTACTTTTCTGAGGCTGGAACTGAATTTAGAGTTTGATTATCCCCCATGTGATTAGTTCTGTTTTTTATGCGTTTATGATGGAAACTCACCTTAGAAAGGCTTGAAAGAAGAGTTTTTGCTTTTTGAGAAGTTTTCATCCAATATATTGCTAGATTATTCTTTTTAAACATATCTTACTAGATTACTATGCCTCTTTCCAAAAAAAAATGTTTGGCTCAGAGAAGCAGGACCTACTCGTGTTGAGAAAAGCATTGAAATTACTGGGCTTGTCATAAACCACAGAAGCTGGATCTACCAGTGTAGCATGAATATTAAGTTGTTAATAAGACAGCTGGGCTGGCTACTTGTACTTGGACCTGATGAATCTAATTTGTTGGTCCTTGTGCAAAGGATGTTGGACAATTGAAACTGCTTCTCTTTAATATAAGTTTTGTCTTCTATGACGATTCAAAGCATCTTAATTGAGTTGGTTTTATATAATTACTCTGTGTTTACTTGTAGGGGTTATTAGCATGAAATATCTGATGATTTCATTTCAGTTATATTGTAACACCTTATTCCTTCTATACAATGATGGCTCGTATCAAGTGTTTTATGCGCTTCTTATTGAAAAATTGCTAAATGTGTATCGACATATCTAATCTTTCTATTGCCACTTCTAACTGTGGCAGAATTCAGAAAGAGGAGGCACTAAAATTTCGTGTTGCCAAGACCAGTGAAGTGGGTGAAATAGAAAAGGTAATGCACTTGTAGGACATTACATTGTTGTTGGAATGCTTCATATGTTCCAAATGTAGTTACATAAAAGACATGGGTTTTCCATGCATTTGTTGAAATTTCCTGATGTGGCTGCTTTTTATTTGTAGTTAACACTTATACTTTTAGTTTAAATAAATAAAGAATTTCTAAGAAGAGAATAAGAAGATGAAATACCCCTTTACACTGTGTCTACCTGTGCTTTATTCTTCTTTAACATTGTTTTTTGTAATATTTCCTTGTATTTGCCGCATTAACCTTGACAAGTTAGTGAAACCAGTTTGATTTTCTGCCTGGACTAAAATTTTTTAGGTTATGGCTCCTTTGCTTGTGTTTTCAGGAATTAGCAGCTGAGATCTCAGCTCTTGAGAAACAAAGGAATGAAATTGAAGCTCAACTGAAGCAGGTAAGCAGTTGGTGGAAGTCATCTCCCGTACCTTGTTTTTTAGTATTTTAATCATTTACATATAAAAATAGAACGAAGCCCCTCCTTCATACAGTTTACAACTACACATACAAGTTGGACGTTTAAGATGTGTTCTCGGAACATATGTGCCTACCTTTAAAATCTCTCTTTGTCATATGAACTTCAAGTTCTATCTTGACTCGAGGGTCTATTTGGAAACAACATCTCTACCCAAACAAGGTGGGGTAAGACTGCGTACACACCACCCTCCTTAGACCCTATTTGTTGGATTTTATTGGGTATGCTTTTCTTGGCTTTCAAGTTGTGCAAAATTTCATGCTTGTATTTTAAAGGAGAATGCTAGGCACTATATTTAAGTTAGATTGATGAAGGCCAGAGACAGATCTACGGGTTTAATATGTTAGATGAAGACAAGGTGTTATGATACCTTTGCCTCTCCCTAATTCTGCAATAATTTTTCATAAAATTCATACAAGTATGATTACATAAATTGCCTTAATGATATGGGGCCGGCATGACTGAGAGACAAGGTCTCTACAAGAAAATTATCATCTAAGAAAAGCTTCTAACGTTTTGGAACTCAGAAAATGTTGACTAAGTAAGGTTCCTTCCCTTCTTTAAGCTTTACTGTTTTCTTTAGGGTACACCGAGAATCTTCAATGCCAAACTGATTTTGATTTAAACCCCTTCATTTTATTAAGCAATTTTATAATAAGATATTATTTTAGGGTGAAGCATTAACTATGTTTTTATTATAATCTGCTTTATCAATCATCCTTCTCTATCTCTCTTTGGAAAAAAGGATAATAGAAGATAATGATGACATTTCACATTTTGCTCTCTTCTAAGTGTTTCCAGCATAGTAGGCATATGTTTTAGTTAGTTTAAGAAGAGAAAAACTTTTAGTGTTTTCTTGCTCTGAAAATGGTGGTGGTAAATACTAAATACTCACTGGATGTGTAGGTTCTGGTGGCATAACCTAAATGTCAATGTGATAGGGATGTGGATAAGTGAAATACATAGTTTTTGAGGTTAAATCTTAATGCATTCTTCACTCAACTATACTACCTAACAACTTACATGATTATTGACTTGCACTACCTGTTTCCGCACAATTTTTCCATTATCTCTCAGTTATACCTGTCAAATTGAGATAGTAAAGAAGGTATCCATGATAAGTCTTCACCAACTGAAAAGAGTTTGAAATAGTTCTAATTTTTTCCATTTAAATTGTGCTAATTTGCCATGTCACTGTCCTGACTAAACTGGGTTCTTTTAGGTCAATATCTCCTTGGCAGCAGCTAGTGCACGCCTTCATAATGCCCGAGAAGAGAGGGACCAATTCTATGACGC</genome_strand>
        <mrna_strand>TGAAATCTAATGCAGATCTCGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATGCCGAAGTCTCTACATTGAATAAACAACTTGATGAAATAAAAGCAGTAAAGGACGCAAGTGGGGATCATGAAACAATATCCAAAGAGACTGCGGCTTCAATAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGAAAGTAGCACTTGCTCATATTCGGGTCTGTTCCAGATTAGAAGGGCTTCTACTGAAGAAAAAATCTCTTAAATACGGGGACTCTCCGGAAGTCCATTCTCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGATAAGTTGAAACTCCTATCCGAATCTCTTGTTAGATCCGCCAACAAAGCTGAAAAGGAGATCTCAGATGACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTCAGAAAGAGGAGGCACTAAAATTTCGTGTTGCCAAGACCAGTGAAGTGGGTGAAATAGAAAAG......................................................................................................................................................................................................................................................................................................................................................................GAATTAGCAGCTGAGATCTCAGCTCTTGAGAAACAAAGGAATGAAATTGAAGCTCAACTGAAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAATATCTCCTTGGCAGCAGCTAGTGCACGCCTTCATAATGCCCGAGAAGAGAGGGACCAATTCTATGACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E273124" ref_strand="+" ref_description="SGN-E273124 [cLEM-24-B19]">
      <seq>aggtttctgttgaagataaagagaagaacaatgagcagcagcatccttccgaggaagtaagaaaacaaccactggttctctattatgattctgagatgggcggtgagccactgaactttcgcgatgtctttctctatagtaaaggtttggagggcatggtgatatgtatgattcttgaagcgccaaacgaagaggaaatctctctccttcttgaattatttgaactctgtctcacagggggaaaagcggttcacagtgcaataatcagcagcatccaagatttgtcaaatgctttctcaaactaccaagacgaagtattggtaaaacgtgaggagctattgcagttcgcagaaagtgccatcacagggttgaaatctaatgcagatctcggaagaattgatgccgaagtctctacattgaataaacaacttgatgaaataaaagcagtaaaggacgcaagtggggatcatgaaacaatatccaaagagactgcggcttcaatagaggcactgaaagtagcacttgctcatattcgggtctgttccagattagaagggcttctactgaagaaaaaatctcttaaatacggggactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19285" stop="14073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18985" g_stop="18912" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18911" i_stop="17671" i_length="1241">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17670" g_stop="17575" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="170" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17574" i_stop="17222" i_length="353">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17221" g_stop="17169" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="223" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17168" i_stop="17014" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17013" g_stop="16917" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="320" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="16916" i_stop="16826" i_length="91">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16825" g_stop="16752" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="394" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16751" i_stop="15876" i_length="876">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15875" g_stop="15764" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="506" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15763" i_stop="14462" i_length="1302">
            <donor d_prob="0.450" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="14461" g_stop="14373" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="595" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E273124" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18985" e_stop="18912"/>
          <exon e_start="17670" e_stop="17575"/>
          <exon e_start="17221" e_stop="17169"/>
          <exon e_start="17013" e_stop="16917"/>
          <exon e_start="16825" e_stop="16752"/>
          <exon e_start="15875" e_stop="15764"/>
          <exon e_start="14461" e_stop="14373"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTGGTGAGTAGCTTGATCTCGACTGCTGTTGCTCTGTTATCTTTCTCCTATTACCATGAAACAGGATTGAATTTGTTCCTTGTAGACACAATTTCTCTATTTTTGTCTTTTAATTGCACATGAGAGAAGACGGTCTGAGTAAACTAGTTTTTTCTTCCTTTAAGATTACTGTCTTGTACACCTTGCAGTTTGGATGCTTTTTTCACCACTCGATATTCAGATGAGGTGAAAATAAAATGTTCTAACAGTTTGTGTTCATTGATTTTCTTTGCCGTTGTTTCATCGTATTGAATTGTCTTTTGAATGTTGATCTCAGTGTCTGTTATTCTCCTTCATCATGGTTCTTTTGCTGCTTTTGAGATCTTTGCTCTTTCATCCATCTCTATCTGTTGTTTTAAAATCAGTAAAGCAGCCTCTGACTTCACTTTGTCCTGTATCCTTCTGTGATGGCTATTACCTTCCTATTGAACTAACTTGTGCATAGTATCGGATTAATGCCCCTTGATTATGTATGCCTCATGCACCAACTAGATTCATAGACTTAGCTGTTGCCTGTTGCAGCATCAAGACACACTATAAGGAATCATCCTGTGAGTCACTGGTGAAGCAGTAAATATTTGAGTGTGGCCTCATTATGTGCAAAATTTAACTTTAGAAGAAAATGCGGATCAGGGATTAGATTTTACTTTGAGAGGTTTTTGTCTTGACAAGCTTTATATGAGTTTTGCTGCTTCTAATGTGAGGATTCTTGCTACCTATTCATGAGCAGTGTATGGAATAATTTTTTTTGCCTTTAACTAGCATTATGTACTTGTTGTGAATATAATCCTCTCAAATCATTGCTGATTTTTAGATTGGACAAGGAAGAGATAGCACAGTGATAAATACCCTCCACTTCAAATGATAAGATTGGAGAGTTTGAGTCATTGAGGGAGTAAAAGTAGGAATTGGCCACTGTAGGGCTCTTGTATAGGGGTTCTTTTGCATGAAGTTCACCATATCAGAATAAACAATCTGATTATTTAGATTGTTGTCTCCCTCTTATTTATTTTAGTTACAGGTCATTTCTTTATACTTTTGTTACTTAGACATGAGGAAAACACAATCTGGAATTTTGGTGTTCTTTTGTCTTTCGCATACCTCTTCTTTGCTTGTTGATGCCATTGCCGTTCATCCTTCAAAAATTGCATTCACAATATTTGGTTTCATGCAGATTGACTTAACCCATATTTATAATGTTATAGGTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATGGTATGCTACGTTTCTAAGTCCTGCTTGCTTTCGGCAAAGAAGTTGCAGTTATTTTTGGCTTTTCCTGTTTCACTTTGGCTCAATTTTGATCTTCATGATTGCTTTAATCTTTTCAAGAAATGTTACAATTATTGTCTCATTTGAGCAAAGACACCTATGGAGTGTTTTATTTATACATTATTTTAAAAAAATGTTGTATTTGGCTGACTGTACCTCTGGAGAAAAGTTGGTGCTTTATTATTGTCCGCCAGGTCATCTAATATCTTTTGGTCTTGAACATTTCACATGTACTTTGCTTGTCATGTGGATCTCAAATTGCTTATCACGCATGTTCACTCTTTTCTGTGATTCAGATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGAGTGAGTTCTTTTACTATAATGTCCATGAGTATATGATTTTCATAGCATGCAATGTGATTTTGATAACATGTAATTAAAGCGTTCTTCCAGTGCGTGGCATGTGGGGAGTGGGTACAGTTATTGACTGAAACTTTACTGTGTTTGGTCACATGCAGACTCTGTCTCACAGGGGGAAAAGCGGTTCACAGTGCAATAATCAGCAGCATCCAAGATTTGTCAAATGCTTTCTCAAACTACCAAGACGAAGTATTGGTAAGGGGACAATCTTTCCATTTTAATAAACATATGCCATAACTGATAAGGTATTGATTTTGGCGCGGCTCTCTATTCAATCCATTGGCAGGTAAAACGTGAGGAGCTATTGCAGTTCGCAGAAAGTGCCATCACAGGGTTGAAATCTAATGCAGATCTCGGAAGGTATTACTTCTTATAACACCTAAAATTTTGACATCTTTTTTATATGAACCCCAGGGTTGGAGCGAATTATTTTGAAGTGGAATTTCCTTCTTGTTTTCAGAGCTTTTGGTGCTTAGTTTCCTTTTTCTTAGTGGACGAGTAACTGCATATTATCTTATGATAAGTAAGTGCATCTTATTAAGTCGAGTGACAGGAAAGCTCCTGCTAACTTAATTAATTTAGGATGGGAAGAAACAACAATAAATTTAAACATGACGTTTGTCACCTTTGAAAGAAATGTATTTTTAAACATGAGCTATCTTATTTCCTTCTGATTCCTTCTATGTAAATGAAATGATAGTTGTAGAGCCTTCCAAGAGTGAAAAAAGGGATTCATATATTATCAAAAGACATATCCCTTTAGTGTTAAGTTTTGGAGCCTTTCACTTTGTTTTTTTTTAAAAAAGAAAATTATGATATGGTAGGTATAGCAGAGGTAGCCAGTCCTTGAAACCTGATCTAGAAATCATTTGAGACTTTTGTGATCTTAAATTTGTTTATGATCTAATTTTTTCCTAGACATGCCATTTATGTAAAAGACAGCTCATTTCAAGGACCTTCTTATCAAGCAAAGAATTCATTTTGACCAGTTTAAAACAATTATTAATGATGGTAAAATACAGGTCACATGTTTGATATTCTACCATTTTAAAAAAATATGCTTTTGTTACGTGGGGGAAGGGGATGCCACTTGTGATGTTCGAATCTTTCACTTACTTTTGAAGTTGAGGGTGCTTGCAAGTTAGCTACCACTCAACCCCTTGATATTGTTCCATCGATATCTGCTTTTGGCCTAAGGTTTTTGTTTTGGTTGTAATAAATGCTTTCCACCTGCAGAATTGATGCCGAAGTCTCTACATTGAATAAACAACTTGATGAAATAAAAGCAGTAAAGGACGCAAGTGGGGATCATGAAACAATATCCAAAGAGACTGCGGCTTCAATAGAGGTGAACCAGATTGGTGCTATATTTTTTCCTTTTGTTGCTCCATCTACTGTATTTTATTAGGCACAATCAATCTGGCTTGGGACTAAGAAGTTGAATTTGAACACATGTTATATAAGAGGTAGAATGAGAAACATTTTAGTGGTTAAAGCTAAAGTTATCGATGAATTACGCATCATGATTTAACCTTAAATTGTTAAATGAATTTTGATGAAAGTCTTATTAGATGTTGTTACACAGAAATGCAACCTCCTCTCTAGGAGGTGTGCTCTCTTGGCTAGCTGCTAGAGGGGTGATTTTGGCAGCGCATAATCTGAGAAATGCAAGGTTGGTGTTATATGTGCAAGGAGGTGGGTGAGGACATGCATCTTCTTATACATAGCGAACTTACCATGAGGTTATTGTGGGGGACACGGTTCAGCGGTTTAGGATTTCTTGGGCAATGCCAAAAACTGTGAAAGATTTGATGTCTTTGTTGGAGGAGCTGGAGGAGGAGACGTAGGGCATGGAACGTGGTTCCTCTAACGATGATGTGGGTTGTTTGGACTTTGGAGAGAGAGAGAAATAGGAGAGCTTCTGAGTGGATAGAGTCGAGTTTTATTCAGTTGAGGAGTAGTCTCTAGTCACTTATTTTCTTTTGGTGCACCCATAAAGTTCTATGTGGTGGGAGTTTGTAGAGAATCACGTCTTTTTGTAGATCATTTGCTTTTTGGTATACCCATTGTAGACGGACAGATTTTTGGCCATTATGAATGAATTGCAGTTACCTGATGAAAATAATAAAAGAAAATGTTGTTTCTTGAATGAAAAAACCGGAATGGATCTGGTAAAGTGGTGCTTTACATATGTTAGTATTTACATAATTGGTTCATTTATAAAATGGAAATGTTCTTCAGGCAATCCTCTCCATTTATATCCATATCATAAATCTGATCAGTCGTTCAGAATTTCCAAAAGTTTACATGTTTTTATTTTTCATTGTAGTGTTTGGTCATGGCAAGTGATACATGAAGTTACTGCATGAGACTCATTTTCCATTGCATCAGGAATGGACTTCTATACTTGAAATAATTTATACATAAGTGTATTAAACTTACCACAAACATATATTTCTCAAAACCTTGTTATTTTATGAATTAGCTTTTTGAAGATGGATGTTGCATTAGGGACTTTCATTAATCTAGCATGATAAGAGACCAAAATGAATGAAATTTTCCTAACACTGCATATATTAGGCCAACCTACTTGTCTTTTGTAATTAGAAGTTTATGACATAGTTGAATGACCATTGTATTTTTCCAATAGGCACTGAAAGTAGCACTTGCTCATATTCGGGTCTGTTCCAGATTAGAAGGGCTTCTACTGAAGAAAAAATCTCTTAAATACGGGGACTC</genome_strand>
        <mrna_strand>AGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATG.................................................................................................................................................................................................................................................................................................................................................................ATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGA...........................................................................................................................................................ACTCTGTCTCACAGGGGGAAAAGCGGTTCACAGTGCAATAATCAGCAGCATCCAAGATTTGTCAAATGCTTTCTCAAACTACCAAGACGAAGTATTG...........................................................................................GTAAAACGTGAGGAGCTATTGCAGTTCGCAGAAAGTGCCATCACAGGGTTGAAATCTAATGCAGATCTCGGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGATGCCGAAGTCTCTACATTGAATAAACAACTTGATGAAATAAAAGCAGTAAAGGACGCAAGTGGGGATCATGAAACAATATCCAAAGAGACTGCGGCTTCAATAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACTGAAAGTAGCACTTGCTCATATTCGGGTCTGTTCCAGATTAGAAGGGCTTCTACTGAAGAAAAAATCTCTTAAATACGGGGACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E252501" ref_strand="+" ref_description="SGN-E252501 [cLEG-20-G14]">
      <seq>gcaaaattttacaggatcgcattgggaataggaacttcaaaagctttaaacagacggtgcaaagattggaagaagcttctatttcctgcaagggaccagagagagttcagttaatgaaaaggtggttagctgcacttaaagcaattgataacatgtcagaagtttctgttgaagataaagagaagaacaatgagcagcagcatccttccgaggaagtaagaaaacaaccactggttctctattatgattctgagatgggcggtgagccactgaactttcgcgatgtctttctctatagtaaaggtttggagggcatggtgatatgtatgattcttgaagcgccaaacgaagaggaaatctctctccttcttgaattatttgaactctgtctcacagggggaaaagcggttcacagtgcaataatcagcagcatccaagatttgtcaaatgctttctcaaactaccaagacgaagtattggtaaaacgtgaggagctattgcagttcgcagaaagtgccatcacagggttgaaatctaatgcagatctcggaagaattgatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20410" stop="16452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20111" g_stop="20089" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20088" i_stop="19122" i_length="967">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19121" g_stop="18912" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="233" r_length="210" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18911" i_stop="17671" i_length="1241">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17670" g_stop="17575" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="329" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17574" i_stop="17222" i_length="353">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17221" g_stop="17169" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="382" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17168" i_stop="17014" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17013" g_stop="16917" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="479" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16916" i_stop="16826" i_length="91">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16825" g_stop="16752" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="553" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E252501" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20111" e_stop="20089"/>
          <exon e_start="19121" e_stop="18912"/>
          <exon e_start="17670" e_stop="17575"/>
          <exon e_start="17221" e_stop="17169"/>
          <exon e_start="17013" e_stop="16917"/>
          <exon e_start="16825" e_stop="16752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAATTTTACAGGATCGCATTGTAAAATCTCCTTACTAATTAATGTTCATTTCAGTTTTTTTTCCTGATTTTTGAGCTTAAATTTGTGCTGGAATCAAATTTAGAAAATATAGTGCAGTTTCCTTTTTGGTTTTCTTCCCATTAATGGATACGAATTGGTGCTCTGCGGTTTAAAATGTGTAGTCTTAGTTACTAGACTGTTAAGCGGAGAAAATTTGCTGTAACAGTTGCCGAGGGCGTCAAAATGTTCCGGGATCACATTGCAGATATCCTTACTAATCAATGTTTATTCATTTAAGTGATATCAGTAATTAATAGTTGTCCAAGTGTGGACGGTGAGAAATTTGCTGCATTTTTACAAAGTGCATTTCAGCATTTGTATAGGAGAATTAGAAGGAGAAGCTGGTAAAGTAGTATGATGAGGATTGAAACGATCTGCTGGTTGCAATTCATTTTATTAGGAGTCGAGCCATTAAATTTGAATGAGATAGATTTTGTAGAAGAATGGATTGGTTTGGAGAAATGATTTGATGATTATTGAGAGGGATGGTAGAGGGCTGGGTGTTAAATTCTTCTTATAAAAGAGTCAGCTTTATGATAAATTGAATTGCAGAAGAACAAGGAAAAAGGAAGAGACAGTTTGCATGAGGCTTGTCCTCAGCAGAGTTCAGCAATAGCAGAGTACAGAAACTAATAACTGAATGCAAGTATTAATATCAATCAAGAAAATAAACAAATGCATCTAATTAAAAATTTGTTTGCTTTGATGATACATCAATTGTAAAAGAGTTAAAAAAATATTTGGCTGGAAAAAAGTAAGAAATGCTACACGGCTATCACATATAGAACAGAGCTCAAATAGTGCTCAACTAATAAAATCTTGTGAACTGAAGGAACTATCCATTCTATGTCTAGGAACCCTTGTGATTGTACTACATTTCTTTAAGTGAAGTAAAAAAATCATTGCTAATAGGTTTGTTTACGACAGGGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTGGTGAGTAGCTTGATCTCGACTGCTGTTGCTCTGTTATCTTTCTCCTATTACCATGAAACAGGATTGAATTTGTTCCTTGTAGACACAATTTCTCTATTTTTGTCTTTTAATTGCACATGAGAGAAGACGGTCTGAGTAAACTAGTTTTTTCTTCCTTTAAGATTACTGTCTTGTACACCTTGCAGTTTGGATGCTTTTTTCACCACTCGATATTCAGATGAGGTGAAAATAAAATGTTCTAACAGTTTGTGTTCATTGATTTTCTTTGCCGTTGTTTCATCGTATTGAATTGTCTTTTGAATGTTGATCTCAGTGTCTGTTATTCTCCTTCATCATGGTTCTTTTGCTGCTTTTGAGATCTTTGCTCTTTCATCCATCTCTATCTGTTGTTTTAAAATCAGTAAAGCAGCCTCTGACTTCACTTTGTCCTGTATCCTTCTGTGATGGCTATTACCTTCCTATTGAACTAACTTGTGCATAGTATCGGATTAATGCCCCTTGATTATGTATGCCTCATGCACCAACTAGATTCATAGACTTAGCTGTTGCCTGTTGCAGCATCAAGACACACTATAAGGAATCATCCTGTGAGTCACTGGTGAAGCAGTAAATATTTGAGTGTGGCCTCATTATGTGCAAAATTTAACTTTAGAAGAAAATGCGGATCAGGGATTAGATTTTACTTTGAGAGGTTTTTGTCTTGACAAGCTTTATATGAGTTTTGCTGCTTCTAATGTGAGGATTCTTGCTACCTATTCATGAGCAGTGTATGGAATAATTTTTTTTGCCTTTAACTAGCATTATGTACTTGTTGTGAATATAATCCTCTCAAATCATTGCTGATTTTTAGATTGGACAAGGAAGAGATAGCACAGTGATAAATACCCTCCACTTCAAATGATAAGATTGGAGAGTTTGAGTCATTGAGGGAGTAAAAGTAGGAATTGGCCACTGTAGGGCTCTTGTATAGGGGTTCTTTTGCATGAAGTTCACCATATCAGAATAAACAATCTGATTATTTAGATTGTTGTCTCCCTCTTATTTATTTTAGTTACAGGTCATTTCTTTATACTTTTGTTACTTAGACATGAGGAAAACACAATCTGGAATTTTGGTGTTCTTTTGTCTTTCGCATACCTCTTCTTTGCTTGTTGATGCCATTGCCGTTCATCCTTCAAAAATTGCATTCACAATATTTGGTTTCATGCAGATTGACTTAACCCATATTTATAATGTTATAGGTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATGGTATGCTACGTTTCTAAGTCCTGCTTGCTTTCGGCAAAGAAGTTGCAGTTATTTTTGGCTTTTCCTGTTTCACTTTGGCTCAATTTTGATCTTCATGATTGCTTTAATCTTTTCAAGAAATGTTACAATTATTGTCTCATTTGAGCAAAGACACCTATGGAGTGTTTTATTTATACATTATTTTAAAAAAATGTTGTATTTGGCTGACTGTACCTCTGGAGAAAAGTTGGTGCTTTATTATTGTCCGCCAGGTCATCTAATATCTTTTGGTCTTGAACATTTCACATGTACTTTGCTTGTCATGTGGATCTCAAATTGCTTATCACGCATGTTCACTCTTTTCTGTGATTCAGATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGAGTGAGTTCTTTTACTATAATGTCCATGAGTATATGATTTTCATAGCATGCAATGTGATTTTGATAACATGTAATTAAAGCGTTCTTCCAGTGCGTGGCATGTGGGGAGTGGGTACAGTTATTGACTGAAACTTTACTGTGTTTGGTCACATGCAGACTCTGTCTCACAGGGGGAAAAGCGGTTCACAGTGCAATAATCAGCAGCATCCAAGATTTGTCAAATGCTTTCTCAAACTACCAAGACGAAGTATTGGTAAGGGGACAATCTTTCCATTTTAATAAACATATGCCATAACTGATAAGGTATTGATTTTGGCGCGGCTCTCTATTCAATCCATTGGCAGGTAAAACGTGAGGAGCTATTGCAGTTCGCAGAAAGTGCCATCACAGGGTTGAAATCTAATGCAGATCTCGGAAG</genome_strand>
        <mrna_strand>GCAAAATTTTACAGGATCGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAAGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATG.................................................................................................................................................................................................................................................................................................................................................................ATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGA...........................................................................................................................................................ACTCTGTCTCACAGGGGGAAAAGCGGTTCACAGTGCAATAATCAGCAGCATCCAAGATTTGTCAAATGCTTTCTCAAACTACCAAGACGAAGTATTG...........................................................................................GTAAAACGTGAGGAGCTATTGCAGTTCGCAGAAAGTGCCATCACAGGGTTGAAATCTAATGCAGATCTCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E245103" ref_strand="+" ref_description="SGN-E245103 [cLEF-13-P3]">
      <seq>tcgcattgggaataggaacttcaaaagctttaaacagacggtgcaaagattggaagaagcttctatttcctgcaagggaccagagagagttcagttaatgaaaaggtggttagctgcacttaaagcaattgataacatgtcagaggtttctgttgaagataaagagaagaacaatgagcagcagcatccttccgaggaagtaagaaaacaaccactggttctctattatgattctgagatgggcggtgagccactgaactttcgcgatgtctttctctatagtaaaggtttggagggcatggtgatatgtatgattcttgaagcgccaaacgaagaggaaatctctctccttcttgaattatttgaactctgtctcacagggggaaaagcggttcacagtgcaataatcagcagcatccaagatttgtcaaatgctttctcaaactac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="19421" stop="16632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19121" g_stop="18912" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="217" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18911" i_stop="17671" i_length="1241">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17670" g_stop="17575" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="313" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17574" i_stop="17222" i_length="353">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17221" g_stop="17169" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="366" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17168" i_stop="17014" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17013" g_stop="16932" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="448" r_length="82" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E245103" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19121" e_stop="18912"/>
          <exon e_start="17670" e_stop="17575"/>
          <exon e_start="17221" e_stop="17169"/>
          <exon e_start="17013" e_stop="16932"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTGGTGAGTAGCTTGATCTCGACTGCTGTTGCTCTGTTATCTTTCTCCTATTACCATGAAACAGGATTGAATTTGTTCCTTGTAGACACAATTTCTCTATTTTTGTCTTTTAATTGCACATGAGAGAAGACGGTCTGAGTAAACTAGTTTTTTCTTCCTTTAAGATTACTGTCTTGTACACCTTGCAGTTTGGATGCTTTTTTCACCACTCGATATTCAGATGAGGTGAAAATAAAATGTTCTAACAGTTTGTGTTCATTGATTTTCTTTGCCGTTGTTTCATCGTATTGAATTGTCTTTTGAATGTTGATCTCAGTGTCTGTTATTCTCCTTCATCATGGTTCTTTTGCTGCTTTTGAGATCTTTGCTCTTTCATCCATCTCTATCTGTTGTTTTAAAATCAGTAAAGCAGCCTCTGACTTCACTTTGTCCTGTATCCTTCTGTGATGGCTATTACCTTCCTATTGAACTAACTTGTGCATAGTATCGGATTAATGCCCCTTGATTATGTATGCCTCATGCACCAACTAGATTCATAGACTTAGCTGTTGCCTGTTGCAGCATCAAGACACACTATAAGGAATCATCCTGTGAGTCACTGGTGAAGCAGTAAATATTTGAGTGTGGCCTCATTATGTGCAAAATTTAACTTTAGAAGAAAATGCGGATCAGGGATTAGATTTTACTTTGAGAGGTTTTTGTCTTGACAAGCTTTATATGAGTTTTGCTGCTTCTAATGTGAGGATTCTTGCTACCTATTCATGAGCAGTGTATGGAATAATTTTTTTTGCCTTTAACTAGCATTATGTACTTGTTGTGAATATAATCCTCTCAAATCATTGCTGATTTTTAGATTGGACAAGGAAGAGATAGCACAGTGATAAATACCCTCCACTTCAAATGATAAGATTGGAGAGTTTGAGTCATTGAGGGAGTAAAAGTAGGAATTGGCCACTGTAGGGCTCTTGTATAGGGGTTCTTTTGCATGAAGTTCACCATATCAGAATAAACAATCTGATTATTTAGATTGTTGTCTCCCTCTTATTTATTTTAGTTACAGGTCATTTCTTTATACTTTTGTTACTTAGACATGAGGAAAACACAATCTGGAATTTTGGTGTTCTTTTGTCTTTCGCATACCTCTTCTTTGCTTGTTGATGCCATTGCCGTTCATCCTTCAAAAATTGCATTCACAATATTTGGTTTCATGCAGATTGACTTAACCCATATTTATAATGTTATAGGTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATGGTATGCTACGTTTCTAAGTCCTGCTTGCTTTCGGCAAAGAAGTTGCAGTTATTTTTGGCTTTTCCTGTTTCACTTTGGCTCAATTTTGATCTTCATGATTGCTTTAATCTTTTCAAGAAATGTTACAATTATTGTCTCATTTGAGCAAAGACACCTATGGAGTGTTTTATTTATACATTATTTTAAAAAAATGTTGTATTTGGCTGACTGTACCTCTGGAGAAAAGTTGGTGCTTTATTATTGTCCGCCAGGTCATCTAATATCTTTTGGTCTTGAACATTTCACATGTACTTTGCTTGTCATGTGGATCTCAAATTGCTTATCACGCATGTTCACTCTTTTCTGTGATTCAGATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGAGTGAGTTCTTTTACTATAATGTCCATGAGTATATGATTTTCATAGCATGCAATGTGATTTTGATAACATGTAATTAAAGCGTTCTTCCAGTGCGTGGCATGTGGGGAGTGGGTACAGTTATTGACTGAAACTTTACTGTGTTTGGTCACATGCAGACTCTGTCTCACAGGGGGAAAAGCGGTTCACAGTGCAATAATCAGCAGCATCCAAGATTTGTCAAATGCTTTCTCAAACTAC</genome_strand>
        <mrna_strand>GGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATG.................................................................................................................................................................................................................................................................................................................................................................ATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGA...........................................................................................................................................................ACTCTGTCTCACAGGGGGAAAAGCGGTTCACAGTGCAATAATCAGCAGCATCCAAGATTTGTCAAATGCTTTCTCAAACTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E325762" ref_strand="+" ref_description="SGN-E325762 [cTOC-15-L18]">
      <seq>aactttgttaacagcacaaacacttttgcaccatctctatgcacgatcttcctattcactataaataacaataataatcgccgaatcaacgccatttttataacttcgtttgattcatcttcttcatcggtgttgcggaaaaccctaatttgaaattggagaaatacgaaaatgtcgtggttaagatcagctatgaacaaagcagtagaggttggaaatagcaaccttacacgcactgtcagaaattacgccgattccgttggtcacgcagtcgctgaaggagccaaaattttacaggatcgcattgggaataggaacttcaaaagctttaaacagacggtgcaaagattggaagaagcttctatttcctgcaagggaccagagagagttcagttaatgaaaaggtggttagctgcacttaaagcaattgataacatgtcagaggtttctgttgaagataaagagaagaacaatgagcagcagcatccttccgaggaagtaagaaaacaaccactggttctctattatgattctgagatgggcggtgagccactgaactttcgcgatgtctttctctatagtaaaggtttggagggcatggtgatatgtatgattcttgaagcgccaaacgaagaggaaatctctctccttcttgaattatttgaactctgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20694" stop="16869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20394" g_stop="20089" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20088" i_stop="19122" i_length="967">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19121" g_stop="18912" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="516" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18911" i_stop="17671" i_length="1241">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17670" g_stop="17575" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="612" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17574" i_stop="17222" i_length="353">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="17221" g_stop="17169" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="665" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="17168" i_stop="17014" i_length="155">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17013" g_stop="17005" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="674" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E325762" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20394" e_stop="20089"/>
          <exon e_start="19121" e_stop="18912"/>
          <exon e_start="17670" e_stop="17575"/>
          <exon e_start="17221" e_stop="17169"/>
          <exon e_start="17013" e_stop="17005"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTTGTTAACAGCACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCATTGTAAAATCTCCTTACTAATTAATGTTCATTTCAGTTTTTTTTCCTGATTTTTGAGCTTAAATTTGTGCTGGAATCAAATTTAGAAAATATAGTGCAGTTTCCTTTTTGGTTTTCTTCCCATTAATGGATACGAATTGGTGCTCTGCGGTTTAAAATGTGTAGTCTTAGTTACTAGACTGTTAAGCGGAGAAAATTTGCTGTAACAGTTGCCGAGGGCGTCAAAATGTTCCGGGATCACATTGCAGATATCCTTACTAATCAATGTTTATTCATTTAAGTGATATCAGTAATTAATAGTTGTCCAAGTGTGGACGGTGAGAAATTTGCTGCATTTTTACAAAGTGCATTTCAGCATTTGTATAGGAGAATTAGAAGGAGAAGCTGGTAAAGTAGTATGATGAGGATTGAAACGATCTGCTGGTTGCAATTCATTTTATTAGGAGTCGAGCCATTAAATTTGAATGAGATAGATTTTGTAGAAGAATGGATTGGTTTGGAGAAATGATTTGATGATTATTGAGAGGGATGGTAGAGGGCTGGGTGTTAAATTCTTCTTATAAAAGAGTCAGCTTTATGATAAATTGAATTGCAGAAGAACAAGGAAAAAGGAAGAGACAGTTTGCATGAGGCTTGTCCTCAGCAGAGTTCAGCAATAGCAGAGTACAGAAACTAATAACTGAATGCAAGTATTAATATCAATCAAGAAAATAAACAAATGCATCTAATTAAAAATTTGTTTGCTTTGATGATACATCAATTGTAAAAGAGTTAAAAAAATATTTGGCTGGAAAAAAGTAAGAAATGCTACACGGCTATCACATATAGAACAGAGCTCAAATAGTGCTCAACTAATAAAATCTTGTGAACTGAAGGAACTATCCATTCTATGTCTAGGAACCCTTGTGATTGTACTACATTTCTTTAAGTGAAGTAAAAAAATCATTGCTAATAGGTTTGTTTACGACAGGGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTGGTGAGTAGCTTGATCTCGACTGCTGTTGCTCTGTTATCTTTCTCCTATTACCATGAAACAGGATTGAATTTGTTCCTTGTAGACACAATTTCTCTATTTTTGTCTTTTAATTGCACATGAGAGAAGACGGTCTGAGTAAACTAGTTTTTTCTTCCTTTAAGATTACTGTCTTGTACACCTTGCAGTTTGGATGCTTTTTTCACCACTCGATATTCAGATGAGGTGAAAATAAAATGTTCTAACAGTTTGTGTTCATTGATTTTCTTTGCCGTTGTTTCATCGTATTGAATTGTCTTTTGAATGTTGATCTCAGTGTCTGTTATTCTCCTTCATCATGGTTCTTTTGCTGCTTTTGAGATCTTTGCTCTTTCATCCATCTCTATCTGTTGTTTTAAAATCAGTAAAGCAGCCTCTGACTTCACTTTGTCCTGTATCCTTCTGTGATGGCTATTACCTTCCTATTGAACTAACTTGTGCATAGTATCGGATTAATGCCCCTTGATTATGTATGCCTCATGCACCAACTAGATTCATAGACTTAGCTGTTGCCTGTTGCAGCATCAAGACACACTATAAGGAATCATCCTGTGAGTCACTGGTGAAGCAGTAAATATTTGAGTGTGGCCTCATTATGTGCAAAATTTAACTTTAGAAGAAAATGCGGATCAGGGATTAGATTTTACTTTGAGAGGTTTTTGTCTTGACAAGCTTTATATGAGTTTTGCTGCTTCTAATGTGAGGATTCTTGCTACCTATTCATGAGCAGTGTATGGAATAATTTTTTTTGCCTTTAACTAGCATTATGTACTTGTTGTGAATATAATCCTCTCAAATCATTGCTGATTTTTAGATTGGACAAGGAAGAGATAGCACAGTGATAAATACCCTCCACTTCAAATGATAAGATTGGAGAGTTTGAGTCATTGAGGGAGTAAAAGTAGGAATTGGCCACTGTAGGGCTCTTGTATAGGGGTTCTTTTGCATGAAGTTCACCATATCAGAATAAACAATCTGATTATTTAGATTGTTGTCTCCCTCTTATTTATTTTAGTTACAGGTCATTTCTTTATACTTTTGTTACTTAGACATGAGGAAAACACAATCTGGAATTTTGGTGTTCTTTTGTCTTTCGCATACCTCTTCTTTGCTTGTTGATGCCATTGCCGTTCATCCTTCAAAAATTGCATTCACAATATTTGGTTTCATGCAGATTGACTTAACCCATATTTATAATGTTATAGGTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATGGTATGCTACGTTTCTAAGTCCTGCTTGCTTTCGGCAAAGAAGTTGCAGTTATTTTTGGCTTTTCCTGTTTCACTTTGGCTCAATTTTGATCTTCATGATTGCTTTAATCTTTTCAAGAAATGTTACAATTATTGTCTCATTTGAGCAAAGACACCTATGGAGTGTTTTATTTATACATTATTTTAAAAAAATGTTGTATTTGGCTGACTGTACCTCTGGAGAAAAGTTGGTGCTTTATTATTGTCCGCCAGGTCATCTAATATCTTTTGGTCTTGAACATTTCACATGTACTTTGCTTGTCATGTGGATCTCAAATTGCTTATCACGCATGTTCACTCTTTTCTGTGATTCAGATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGAGTGAGTTCTTTTACTATAATGTCCATGAGTATATGATTTTCATAGCATGCAATGTGATTTTGATAACATGTAATTAAAGCGTTCTTCCAGTGCGTGGCATGTGGGGAGTGGGTACAGTTATTGACTGAAACTTTACTGTGTTTGGTCACATGCAGACTCTGTCT</genome_strand>
        <mrna_strand>AACTTTGTTAACAGCACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATG.................................................................................................................................................................................................................................................................................................................................................................ATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGA...........................................................................................................................................................ACTCTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E338484" ref_strand="+" ref_description="SGN-E338484 [cTOE-15-B2]">
      <seq>gaaaaccctaatttgaaattggagaaatacgaaaatgtcgtggttaagatcagctatgaacaaagcagtagaggttggaaatagcaaccttacacgcactgtcagaaattacgccgattccgttggtcacgcagtcgctgaaggagccaaaattttacaggatcgcattgggaataggaacttcaaaagctttaaacagacggtgcaaagattggaagaagcttctatttcctgcaagggaccagagagagttcagttaatgaaaaggtggttagctgcacttaaagcaattgataacatgtcagaggtttctgttgaagataaagagaagaacaatgagcagcagcatccttccgaggaagtaagaaaacaaccactggttctctattatgattctgagatgggcggtgagccactgaactttcgcgatgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20557" stop="17315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20257" g_stop="20089" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20088" i_stop="19122" i_length="967">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19121" g_stop="18912" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="379" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="18911" i_stop="17671" i_length="1241">
            <donor d_prob="0.922" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17670" g_stop="17615" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="435" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E338484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20257" e_stop="20089"/>
          <exon e_start="19121" e_stop="18912"/>
          <exon e_start="17670" e_stop="17615"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCATTGTAAAATCTCCTTACTAATTAATGTTCATTTCAGTTTTTTTTCCTGATTTTTGAGCTTAAATTTGTGCTGGAATCAAATTTAGAAAATATAGTGCAGTTTCCTTTTTGGTTTTCTTCCCATTAATGGATACGAATTGGTGCTCTGCGGTTTAAAATGTGTAGTCTTAGTTACTAGACTGTTAAGCGGAGAAAATTTGCTGTAACAGTTGCCGAGGGCGTCAAAATGTTCCGGGATCACATTGCAGATATCCTTACTAATCAATGTTTATTCATTTAAGTGATATCAGTAATTAATAGTTGTCCAAGTGTGGACGGTGAGAAATTTGCTGCATTTTTACAAAGTGCATTTCAGCATTTGTATAGGAGAATTAGAAGGAGAAGCTGGTAAAGTAGTATGATGAGGATTGAAACGATCTGCTGGTTGCAATTCATTTTATTAGGAGTCGAGCCATTAAATTTGAATGAGATAGATTTTGTAGAAGAATGGATTGGTTTGGAGAAATGATTTGATGATTATTGAGAGGGATGGTAGAGGGCTGGGTGTTAAATTCTTCTTATAAAAGAGTCAGCTTTATGATAAATTGAATTGCAGAAGAACAAGGAAAAAGGAAGAGACAGTTTGCATGAGGCTTGTCCTCAGCAGAGTTCAGCAATAGCAGAGTACAGAAACTAATAACTGAATGCAAGTATTAATATCAATCAAGAAAATAAACAAATGCATCTAATTAAAAATTTGTTTGCTTTGATGATACATCAATTGTAAAAGAGTTAAAAAAATATTTGGCTGGAAAAAAGTAAGAAATGCTACACGGCTATCACATATAGAACAGAGCTCAAATAGTGCTCAACTAATAAAATCTTGTGAACTGAAGGAACTATCCATTCTATGTCTAGGAACCCTTGTGATTGTACTACATTTCTTTAAGTGAAGTAAAAAAATCATTGCTAATAGGTTTGTTTACGACAGGGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTGGTGAGTAGCTTGATCTCGACTGCTGTTGCTCTGTTATCTTTCTCCTATTACCATGAAACAGGATTGAATTTGTTCCTTGTAGACACAATTTCTCTATTTTTGTCTTTTAATTGCACATGAGAGAAGACGGTCTGAGTAAACTAGTTTTTTCTTCCTTTAAGATTACTGTCTTGTACACCTTGCAGTTTGGATGCTTTTTTCACCACTCGATATTCAGATGAGGTGAAAATAAAATGTTCTAACAGTTTGTGTTCATTGATTTTCTTTGCCGTTGTTTCATCGTATTGAATTGTCTTTTGAATGTTGATCTCAGTGTCTGTTATTCTCCTTCATCATGGTTCTTTTGCTGCTTTTGAGATCTTTGCTCTTTCATCCATCTCTATCTGTTGTTTTAAAATCAGTAAAGCAGCCTCTGACTTCACTTTGTCCTGTATCCTTCTGTGATGGCTATTACCTTCCTATTGAACTAACTTGTGCATAGTATCGGATTAATGCCCCTTGATTATGTATGCCTCATGCACCAACTAGATTCATAGACTTAGCTGTTGCCTGTTGCAGCATCAAGACACACTATAAGGAATCATCCTGTGAGTCACTGGTGAAGCAGTAAATATTTGAGTGTGGCCTCATTATGTGCAAAATTTAACTTTAGAAGAAAATGCGGATCAGGGATTAGATTTTACTTTGAGAGGTTTTTGTCTTGACAAGCTTTATATGAGTTTTGCTGCTTCTAATGTGAGGATTCTTGCTACCTATTCATGAGCAGTGTATGGAATAATTTTTTTTGCCTTTAACTAGCATTATGTACTTGTTGTGAATATAATCCTCTCAAATCATTGCTGATTTTTAGATTGGACAAGGAAGAGATAGCACAGTGATAAATACCCTCCACTTCAAATGATAAGATTGGAGAGTTTGAGTCATTGAGGGAGTAAAAGTAGGAATTGGCCACTGTAGGGCTCTTGTATAGGGGTTCTTTTGCATGAAGTTCACCATATCAGAATAAACAATCTGATTATTTAGATTGTTGTCTCCCTCTTATTTATTTTAGTTACAGGTCATTTCTTTATACTTTTGTTACTTAGACATGAGGAAAACACAATCTGGAATTTTGGTGTTCTTTTGTCTTTCGCATACCTCTTCTTTGCTTGTTGATGCCATTGCCGTTCATCCTTCAAAAATTGCATTCACAATATTTGGTTTCATGCAGATTGACTTAACCCATATTTATAATGTTATAGGTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTT</genome_strand>
        <mrna_strand>GAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330105" ref_strand="+" ref_description="SGN-E330105 [cTOD-5-M20]">
      <seq>acaaacacttttgcaccatctctatgcacgatcttcctattcactataaataacaatgataatcgccgaatcaacgccatttttataacttcgtttgattcatcttcttcatcggtgttgcggaaaaccctaatttgaaattggagaaatacgaaaatgtcgtggttaagatcagctatgaacaaagcagtagaggttggaaatagcaaccttacacgcactgtcagaaattacgccgattccgttggtcacgcagtcgctgaaggagccaaaattttacaggatcgcattgggaataggaacttcaaaagctttaaacatacggtgcaaagattgggagaagcttctgtttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20679" stop="18758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20379" g_stop="20089" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="291" r_length="291" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20088" i_stop="19122" i_length="967">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19121" g_stop="19058" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="355" r_length="64" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E330105" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20379" e_stop="20089"/>
          <exon e_start="19121" e_stop="19058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCATTGTAAAATCTCCTTACTAATTAATGTTCATTTCAGTTTTTTTTCCTGATTTTTGAGCTTAAATTTGTGCTGGAATCAAATTTAGAAAATATAGTGCAGTTTCCTTTTTGGTTTTCTTCCCATTAATGGATACGAATTGGTGCTCTGCGGTTTAAAATGTGTAGTCTTAGTTACTAGACTGTTAAGCGGAGAAAATTTGCTGTAACAGTTGCCGAGGGCGTCAAAATGTTCCGGGATCACATTGCAGATATCCTTACTAATCAATGTTTATTCATTTAAGTGATATCAGTAATTAATAGTTGTCCAAGTGTGGACGGTGAGAAATTTGCTGCATTTTTACAAAGTGCATTTCAGCATTTGTATAGGAGAATTAGAAGGAGAAGCTGGTAAAGTAGTATGATGAGGATTGAAACGATCTGCTGGTTGCAATTCATTTTATTAGGAGTCGAGCCATTAAATTTGAATGAGATAGATTTTGTAGAAGAATGGATTGGTTTGGAGAAATGATTTGATGATTATTGAGAGGGATGGTAGAGGGCTGGGTGTTAAATTCTTCTTATAAAAGAGTCAGCTTTATGATAAATTGAATTGCAGAAGAACAAGGAAAAAGGAAGAGACAGTTTGCATGAGGCTTGTCCTCAGCAGAGTTCAGCAATAGCAGAGTACAGAAACTAATAACTGAATGCAAGTATTAATATCAATCAAGAAAATAAACAAATGCATCTAATTAAAAATTTGTTTGCTTTGATGATACATCAATTGTAAAAGAGTTAAAAAAATATTTGGCTGGAAAAAAGTAAGAAATGCTACACGGCTATCACATATAGAACAGAGCTCAAATAGTGCTCAACTAATAAAATCTTGTGAACTGAAGGAACTATCCATTCTATGTCTAGGAACCCTTGTGATTGTACTACATTTCTTTAAGTGAAGTAAAAAAATCATTGCTAATAGGTTTGTTTACGACAGGGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCT</genome_strand>
        <mrna_strand>ACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATGATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAGGAACTTCAAAAGCTTTAAACATACGGTGCAAAGATTGGGAGAAGCTTCTGTTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E330104" ref_strand="+" ref_description="SGN-E330104 [cTOD-5-M8]">
      <seq>acaaacacttttgcaccatctctatgcacgatcttcctattcactataaataacaataataatcgccgaatcaacgccatttttataacttcgtttgattcatcttcttcatcggtgttgcggaaaaccctaatttgaaattggagaaatacgaaaatgtcgtggttaagatcagctatgaacaaagcagtagaggttggaaatagcaaccttacacgcactgtcagaaattacgccgattccgttggtcacgcagtcgctgaaggagccaaaattttacaggatcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20679" stop="19791"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20379" g_stop="20091" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E330104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20379" e_stop="20091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCA</genome_strand>
        <mrna_strand>ACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E305372" ref_strand="+" ref_description="SGN-E305372 [cLEX-15-C1]">
      <seq>tttgttaacagcacaaacacttttgcaccatctctatgcacgatcttcctattcactataaataacaataataatcgccgaatcaacgccatttttataacttcgtttgattcatcttcttcatcggtgttgcggaaaaccctaatttgaaattggagaaatacgaaaatgtcgtggttaagatcagctatgaacaaagcagtagaggttggaaatagcaaccttacacgcactgtcagaaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0114G11-P8xIv/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0114G11.1" temp_strand="-" temp_description="C04HBa0114G11.1  CU372924.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0114G11 sequenced_by:sanger upload_account_name:uk">
        <position start="20691" stop="19847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20391" g_stop="20147" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="245" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0114G11.1" gen_strand="-" ref_id="SGN-E305372" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>245</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0114G11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305372" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20391" e_stop="20147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTAACAGCACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTA</genome_strand>
        <mrna_strand>TTTGTTAACAGCACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>17</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="9945" PGL_stop="7780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9711" e_stop="9648"/>
            <exon e_start="9558" e_stop="9491"/>
            <exon e_start="9409" e_stop="9316"/>
            <exon e_start="8845" e_stop="8775"/>
            <exon e_start="8684" e_stop="7938"/>
            <exon e_start="7795" e_stop="7785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.702" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.929" e_score="0.995"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9711" e_stop="9648" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.917">
            <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9558" e_stop="9491" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.734" acc_prob="0.959">
            <gDNA_intron_boundary i_start="9490" i_stop="9410" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9409" e_stop="9316" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.702">
            <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8845" e_stop="8775" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.977">
            <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="8684" e_stop="7938" e_length="747"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="7937" i_stop="7796" i_length="142"/>
          </intron>
          <exon e_serial="6" e_score="0.545">
            <gDNA_exon_boundary e_start="7795" e_stop="7785" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9711" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9409" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9711" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9409" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9711" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9409" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9375" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8511" stop="7938"/>
              <exon start="7795" stop="7785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG : AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG : CTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG : ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG : GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCGAGTCTGGAAACATTAACCAGGATTTCACTGCAGAAGAGATTGGTGGCTGGGAATTTGATGAACTGGAAAATGAATTAAATTCTGGGACTCGCGCAATCCCTGAAAAGAGATAGAAATACCTAATGATAAAACTTTAAGAAATCTTCTATCCATGTCTAATAATGTTTGGATGTAGTTTCATGTATTTATTCTGTGTAAATTCGCGAACTTGCGGAACTGCATTTCATATCAGAATCATGTAGAAACTTTGCTAGGATGATTATATCCAAATTTGTAGTCGACTAGACCCGGTAAGCCAAAAAATATTAACTCACAGGTTAATTTTATTTGCGTTATTCTTAGATTTTAC : AAAATGATGAG</gDNA_template>
            <first_frame> *  I  G  K  A  *  G  L  F  C  E  L  G  L  A  T  S  L  *  L  R   : E  R  V  E  A  F  N  *  P  Y  *  K  I  C  G  K  F  E  E  F  R  *  R  :  L  S  K  R  S  W  S  V  F  R  *  I  K  S  I  E  P  *  E  K  S  G  V  G  V  P  G  L  *  S  Q   : D  Y  N  H  L  *  R  S  R  Q  H  D  G  A  V  L  C  S  T  R  E  S  I  Q  :  E  R  *  S  K  D  *  R  A  V  *  E  H  *  K  I  T  R  R  I  *  I  Y  *  E  T  G  T  G  N  G  D  P  G  C  P  H  P  R  G  R  C  F  I  S  *  Y  S  *  *  K  *  I  R  S  R  K  E  G  N  R  S  P  *  N  W  D  E  *  G  K  Q  T  T  F  Y  Q  S  R  E  C  V  *  R  C  T  Q  *  S  A  G  E  C  I  K  F  C  E  E  D  N  R  S  P  H  S  W  C  K  G  G  K  E  T  S  S  Y  E  C  *  A  N  V  *  S  R  V  G  E  I  G  I  R  V  W  K  H  *  P  G  F  H  C  R  R  D  W  W  L  G  I  *  *  T  G  K  *  I  K  F  W  D  S  R  N  P  *  K  E  I  E  I  P  N  D  K  T  L  R  N  L  L  S  M  S  N  N  V  W  M  *  F  H  V  F  I  L  C  K  F  A  N  L  R  N  C  I  S  Y  Q  N  H  V  E  T  L  L  G  *  L  Y  P  N  L  *  S  T  R  P  G  K  P  K  N  I  N  S  Q  V  N  F  I  C  V  I  L  R  F  Y  :  K  M  M   </first_frame>
            <second_frame>  E  L  E  K  H  E  D  Y  F  V  N  L  V  L  Q  L  L  S  D  Y  E  :  K  E  L  R  P  S  I  D  R  I  R  K  Y  V  E  N  L  K  S  L  G  E  G :   S  A  K  E  A  G  L  S  S  G  E  S  K  A  L  S  P  R  K  S  L  E  L  E  Y  L  D  Y  E  A  K  :  I  I  T  T  F  S  V  V  D  N  M  M  E  Q  F  Y  A  Q  H  G  K  V  S  R :   K  D  D  P  K  I  K  G  L  F  E  N  I  E  K  L  R  E  E  F  E  S  I  E  R  P  E  L  E  M  E  I  P  D  A  P  T  Q  E  G  D  A  S  S  H  N  I  P  D  E  N  K  S  D  P  A  R  K  A  T  E  A  P  E  T  G  T  N  E  E  N  K  P  P  S  T  K  A  E  N  V  S  N  A  A  P  N  K  V  P  E  N  V  S  S  S  A  R  K  T  I  E  A  P  T  A  G  A  K  E  E  K  K  P  A  A  T  S  A  E  Q  M  Y  E  A  E  L  A  K  L  E  S  E  S  G  N  I  N  Q  D  F  T  A  E  E  I  G  G  W  E  F  D  E  L  E  N  E  L  N  S  G  T  R  A  I  P  E  K  R  *  K  Y  L  M  I  K  L  *  E  I  F  Y  P  C  L  I  M  F  G  C  S  F  M  Y  L  F  C  V  N  S  R  T  C  G  T  A  F  H  I  R  I  M  *  K  L  C  *  D  D  Y  I  Q  I  C  S  R  L  D  P  V  S  Q  K  I  L  T  H  R  L  I  L  F  A  L  F  L  D  F  T :   K  *  *  </second_frame>
            <third_frame>   N  W  K  S  M  R  I  I  L  *  T  W  S  C  N  F  S  L  I  T  R :   K  S  *  G  L  Q  L  T  V  L  E  N  M  W  K  I  *  R  V  *  V  K   : A  Q  Q  K  K  L  V  C  L  P  V  N  Q  K  H  *  A  L  G  K  V  W  S  W  S  T  W  T  M  K  P  R :   L  *  P  P  L  A  *  S  T  T  *  W  S  S  S  M  L  N  T  G  K  Y  P   : G  K  M  I  Q  R  L  K  G  C  L  R  T  L  K  N  Y  E  K  N  L  N  L  L  R  D  R  N  W  K  W  R  S  R  M  P  P  P  K  R  E  M  L  H  L  I  I  F  L  M  K  I  N  Q  I  P  Q  G  R  Q  Q  K  P  L  K  L  G  R  M  R  K  T  N  H  L  L  P  K  Q  R  M  C  L  T  L  H  P  I  K  C  R  R  M  Y  Q  V  L  R  G  R  Q  *  K  P  P  Q  L  V  Q  R  R  K  R  N  Q  Q  L  R  V  L  S  K  C  M  K  Q  S  W  R  N  W  N  P  S  L  E  T  L  T  R  I  S  L  Q  K  R  L  V  A  G  N  L  M  N  W  K  M  N  *  I  L  G  L  A  Q  S  L  K  R  D  R  N  T  *  *  *  N  F  K  K  S  S  I  H  V  *  *  C  L  D  V  V  S  C  I  Y  S  V  *  I  R  E  L  A  E  L  H  F  I  S  E  S  C  R  N  F  A  R  M  I  I  S  K  F  V  V  D  *  T  R  *  A  K  K  Y  *  L  T  G  *  F  Y  L  R  Y  S  *  I  L   : Q  N  D  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114G11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9710" stop="9648"/>
                    <exon start="9558" stop="9491"/>
                    <exon start="9409" stop="9316"/>
                    <exon start="8845" stop="8775"/>
                    <exon start="8684" stop="8174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELEKHEDYFVNLVLQLLSDYEKELRPSIDRIRKYVENLKSLGEGSAKEAGLSSGESKALSPRKSLELEYLDYEAKIITTFSVVDNMMEQFYAQHGKVSRKDDPKIKGLFENIEKLREEFESIERPELEMEIPDAPTQEGDASSHNIPDENKSDPARKATEAPETGTNEENKPPSTKAENVSNAAPNKVPENVSSSARKTIEAPTAGAKEEKKPAATSAEQMYEAELAKLESESGNINQDFTAEEIGGWEFDELENELNSGTRAIPEKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9711" e_stop="9648"/>
            <exon e_start="9558" e_stop="9491"/>
            <exon e_start="9409" e_stop="9316"/>
            <exon e_start="8845" e_stop="8775"/>
            <exon e_start="8684" e_stop="7945"/>
            <exon e_start="7795" e_stop="7780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.702" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.929" e_score="0.998"/>
          <exon-only e_score="0.500"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9711" e_stop="9648" e_length="64"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.917">
            <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9558" e_stop="9491" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.734" acc_prob="0.959">
            <gDNA_intron_boundary i_start="9490" i_stop="9410" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9409" e_stop="9316" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.702">
            <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8845" e_stop="8775" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.977">
            <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="8684" e_stop="7945" e_length="740"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="7944" i_stop="7796" i_length="149"/>
          </intron>
          <exon e_serial="6" e_score="0.500">
            <gDNA_exon_boundary e_start="7795" e_stop="7780" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9711" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9409" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9711" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9409" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9711" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9409" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9375" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8420" stop="7945"/>
              <exon start="7795" stop="7780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266423" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG : AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG : CTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG : ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG : GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCGAGTCTGGAAACATTAACCAGGATTTCACTGCAGAAGAGATTGGTGGCTGGGAATTTGATGAACTGGAAAATGAATTAAATTCTGGGACTCGCGCAATCCCTGAAAAGAGATAGAAATACCTAATGATAAAACTTTAAGAAATCTTCTATCCATGTCTAATAATGTTTGGATGTAGTTTCATGTATTTATTCTGTGTAAATTCGCGAACTTGCGGAACTGCATTTCATATCAGAATCATGTAGAAACTTTGCTAGGATGATTATATCCAAATTTGTAGTCGACTAGACCCGGTAAGCCAAAAAATATTAACTCACAGGTTAATTTTATTTGCGTTATTCTTAG : AAAATGATGAGTAGGA</gDNA_template>
            <first_frame> *  I  G  K  A  *  G  L  F  C  E  L  G  L  A  T  S  L  *  L  R   : E  R  V  E  A  F  N  *  P  Y  *  K  I  C  G  K  F  E  E  F  R  *  R  :  L  S  K  R  S  W  S  V  F  R  *  I  K  S  I  E  P  *  E  K  S  G  V  G  V  P  G  L  *  S  Q   : D  Y  N  H  L  *  R  S  R  Q  H  D  G  A  V  L  C  S  T  R  E  S  I  Q  :  E  R  *  S  K  D  *  R  A  V  *  E  H  *  K  I  T  R  R  I  *  I  Y  *  E  T  G  T  G  N  G  D  P  G  C  P  H  P  R  G  R  C  F  I  S  *  Y  S  *  *  K  *  I  R  S  R  K  E  G  N  R  S  P  *  N  W  D  E  *  G  K  Q  T  T  F  Y  Q  S  R  E  C  V  *  R  C  T  Q  *  S  A  G  E  C  I  K  F  C  E  E  D  N  R  S  P  H  S  W  C  K  G  G  K  E  T  S  S  Y  E  C  *  A  N  V  *  S  R  V  G  E  I  G  I  R  V  W  K  H  *  P  G  F  H  C  R  R  D  W  W  L  G  I  *  *  T  G  K  *  I  K  F  W  D  S  R  N  P  *  K  E  I  E  I  P  N  D  K  T  L  R  N  L  L  S  M  S  N  N  V  W  M  *  F  H  V  F  I  L  C  K  F  A  N  L  R  N  C  I  S  Y  Q  N  H  V  E  T  L  L  G  *  L  Y  P  N  L  *  S  T  R  P  G  K  P  K  N  I  N  S  Q  V  N  F  I  C  V  I  L  R :   K  *  *  V  G </first_frame>
            <second_frame>  E  L  E  K  H  E  D  Y  F  V  N  L  V  L  Q  L  L  S  D  Y  E  :  K  E  L  R  P  S  I  D  R  I  R  K  Y  V  E  N  L  K  S  L  G  E  G :   S  A  K  E  A  G  L  S  S  G  E  S  K  A  L  S  P  R  K  S  L  E  L  E  Y  L  D  Y  E  A  K  :  I  I  T  T  F  S  V  V  D  N  M  M  E  Q  F  Y  A  Q  H  G  K  V  S  R :   K  D  D  P  K  I  K  G  L  F  E  N  I  E  K  L  R  E  E  F  E  S  I  E  R  P  E  L  E  M  E  I  P  D  A  P  T  Q  E  G  D  A  S  S  H  N  I  P  D  E  N  K  S  D  P  A  R  K  A  T  E  A  P  E  T  G  T  N  E  E  N  K  P  P  S  T  K  A  E  N  V  S  N  A  A  P  N  K  V  P  E  N  V  S  S  S  A  R  K  T  I  E  A  P  T  A  G  A  K  E  E  K  K  P  A  A  T  S  A  E  Q  M  Y  E  A  E  L  A  K  L  E  S  E  S  G  N  I  N  Q  D  F  T  A  E  E  I  G  G  W  E  F  D  E  L  E  N  E  L  N  S  G  T  R  A  I  P  E  K  R  *  K  Y  L  M  I  K  L  *  E  I  F  Y  P  C  L  I  M  F  G  C  S  F  M  Y  L  F  C  V  N  S  R  T  C  G  T  A  F  H  I  R  I  M  *  K  L  C  *  D  D  Y  I  Q  I  C  S  R  L  D  P  V  S  Q  K  I  L  T  H  R  L  I  L  F  A  L  F  L   : E  N  D  E  *   </second_frame>
            <third_frame>   N  W  K  S  M  R  I  I  L  *  T  W  S  C  N  F  S  L  I  T  R :   K  S  *  G  L  Q  L  T  V  L  E  N  M  W  K  I  *  R  V  *  V  K   : A  Q  Q  K  K  L  V  C  L  P  V  N  Q  K  H  *  A  L  G  K  V  W  S  W  S  T  W  T  M  K  P  R :   L  *  P  P  L  A  *  S  T  T  *  W  S  S  S  M  L  N  T  G  K  Y  P   : G  K  M  I  Q  R  L  K  G  C  L  R  T  L  K  N  Y  E  K  N  L  N  L  L  R  D  R  N  W  K  W  R  S  R  M  P  P  P  K  R  E  M  L  H  L  I  I  F  L  M  K  I  N  Q  I  P  Q  G  R  Q  Q  K  P  L  K  L  G  R  M  R  K  T  N  H  L  L  P  K  Q  R  M  C  L  T  L  H  P  I  K  C  R  R  M  Y  Q  V  L  R  G  R  Q  *  K  P  P  Q  L  V  Q  R  R  K  R  N  Q  Q  L  R  V  L  S  K  C  M  K  Q  S  W  R  N  W  N  P  S  L  E  T  L  T  R  I  S  L  Q  K  R  L  V  A  G  N  L  M  N  W  K  M  N  *  I  L  G  L  A  Q  S  L  K  R  D  R  N  T  *  *  *  N  F  K  K  S  S  I  H  V  *  *  C  L  D  V  V  S  C  I  Y  S  V  *  I  R  E  L  A  E  L  H  F  I  S  E  S  C  R  N  F  A  R  M  I  I  S  K  F  V  V  D  *  T  R  *  A  K  K  Y  *  L  T  G  *  F  Y  L  R  Y  S  *  :  K  M  M  S  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114G11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9710" stop="9648"/>
                    <exon start="9558" stop="9491"/>
                    <exon start="9409" stop="9316"/>
                    <exon start="8845" stop="8775"/>
                    <exon start="8684" stop="8174"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ELEKHEDYFVNLVLQLLSDYEKELRPSIDRIRKYVENLKSLGEGSAKEAGLSSGESKALSPRKSLELEYLDYEAKIITTFSVVDNMMEQFYAQHGKVSRKDDPKIKGLFENIEKLREEFESIERPELEMEIPDAPTQEGDASSHNIPDENKSDPARKATEAPETGTNEENKPPSTKAENVSNAAPNKVPENVSSSARKTIEAPTAGAKEEKKPAATSAEQMYEAELAKLESESGNINQDFTAEEIGGWEFDELENELNSGTRAIPEKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9945" e_stop="9866"/>
            <exon e_start="9714" e_stop="9648"/>
            <exon e_start="9558" e_stop="9491"/>
            <exon e_start="9412" e_stop="9316"/>
            <exon e_start="8845" e_stop="8775"/>
            <exon e_start="8684" e_stop="7938"/>
            <exon e_start="7795" e_stop="7785"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.893" acc_prob="0.894" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.734" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.702" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.977" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.929" e_score="0.995"/>
          <exon-only e_score="0.545"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9945" e_stop="9866" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.893" acc_prob="0.894">
            <gDNA_intron_boundary i_start="9865" i_stop="9715" i_length="151"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9714" e_stop="9648" e_length="67"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.917">
            <gDNA_intron_boundary i_start="9647" i_stop="9559" i_length="89"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9558" e_stop="9491" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.734" acc_prob="0.945">
            <gDNA_intron_boundary i_start="9490" i_stop="9413" i_length="78"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="9412" e_stop="9316" e_length="97"/>
          </exon>
          <intron i_serial="4" don_prob="0.989" acc_prob="0.702">
            <gDNA_intron_boundary i_start="9315" i_stop="8846" i_length="470"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="8845" e_stop="8775" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.979" acc_prob="0.977">
            <gDNA_intron_boundary i_start="8774" i_stop="8685" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="8684" e_stop="7938" e_length="747"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.929">
            <gDNA_intron_boundary i_start="7937" i_stop="7796" i_length="142"/>
          </intron>
          <exon e_serial="7" e_score="0.545">
            <gDNA_exon_boundary e_start="7795" e_stop="7785" e_length="11"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9945" stop="9866"/>
              <exon start="9714" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9412" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8532"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9945" stop="9866"/>
              <exon start="9714" stop="9648"/>
              <exon start="9558" stop="9491"/>
              <exon start="9412" stop="9389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239957" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9375" stop="9316"/>
              <exon start="8845" stop="8775"/>
              <exon start="8684" stop="8287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238482" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8511" stop="7938"/>
              <exon start="7795" stop="7785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAGTTCATGGATCAAATTTTTGGAGGATGCTTGGGTTCTTCAGTCTTCCTATACAGAGACCAAAGACAAGGAGGCCAA : AGTTGAATTGGAAAAGCATGAGGATTATTTTGTGAACTTGGTCTTGCAACTTCTCTCTGATTACGAG : AAAGAGTTGAGGCCTTCAATTGACCGTATTAGAAAATATGTGGAAAATTTGAAGAGTTTAGGTGAAGG : CAGCTCAGCAAAAGAAGCTGGTCTGTCTTCCGGTGAATCAAAAGCATTGAGCCCTAGGAAAAGTCTGGAGTTGGAGTACCTGGACTATGAAGCCAAG : ATTATAACCACCTTTAGCGTAGTCGACAACATGATGGAGCAGTTCTATGCTCAACACGGGAAAGTATCCAG : GAAAGATGATCCAAAGATTAAAGGGCTGTTTGAGAACATTGAAAAATTACGAGAAGAATTTGAATCTATTGAGAGACCGGAACTGGAAATGGAGATCCCGGATGCCCCCACCCAAGAGGGAGATGCTTCATCTCATAATATTCCTGATGAAAATAAATCAGATCCCGCAAGGAAGGCAACAGAAGCCCCTGAAACTGGGACGAATGAGGAAAACAAACCACCTTCTACCAAAGCAGAGAATGTGTCTAACGCTGCACCCAATAAAGTGCCGGAGAATGTATCAAGTTCTGCGAGGAAGACAATAGAAGCCCCCACAGCTGGTGCAAAGGAGGAAAAGAAACCAGCAGCTACGAGTGCTGAGCAAATGTATGAAGCAGAGTTGGCGAAATTGGAATCCGAGTCTGGAAACATTAACCAGGATTTCACTGCAGAAGAGATTGGTGGCTGGGAATTTGATGAACTGGAAAATGAATTAAATTCTGGGACTCGCGCAATCCCTGAAAAGAGATAGAAATACCTAATGATAAAACTTTAAGAAATCTTCTATCCATGTCTAATAATGTTTGGATGTAGTTTCATGTATTTATTCTGTGTAAATTCGCGAACTTGCGGAACTGCATTTCATATCAGAATCATGTAGAAACTTTGCTAGGATGATTATATCCAAATTTGTAGTCGACTAGACCCGGTAAGCCAAAAAATATTAACTCACAGGTTAATTTTATTTGCGTTATTCTTAGATTTTAC : AAAATGATGAG</gDNA_template>
            <first_frame> V  S  S  W  I  K  F  L  E  D  A  W  V  L  Q  S  S  Y  T  E  T  K  D  K  E  A  K :   V  E  L  E  K  H  E  D  Y  F  V  N  L  V  L  Q  L  L  S  D  Y  E  :  K  E  L  R  P  S  I  D  R  I  R  K  Y  V  E  N  L  K  S  L  G  E  G :   S  S  A  K  E  A  G  L  S  S  G  E  S  K  A  L  S  P  R  K  S  L  E  L  E  Y  L  D  Y  E  A  K  :  I  I  T  T  F  S  V  V  D  N  M  M  E  Q  F  Y  A  Q  H  G  K  V  S  R :   K  D  D  P  K  I  K  G  L  F  E  N  I  E  K  L  R  E  E  F  E  S  I  E  R  P  E  L  E  M  E  I  P  D  A  P  T  Q  E  G  D  A  S  S  H  N  I  P  D  E  N  K  S  D  P  A  R  K  A  T  E  A  P  E  T  G  T  N  E  E  N  K  P  P  S  T  K  A  E  N  V  S  N  A  A  P  N  K  V  P  E  N  V  S  S  S  A  R  K  T  I  E  A  P  T  A  G  A  K  E  E  K  K  P  A  A  T  S  A  E  Q  M  Y  E  A  E  L  A  K  L  E  S  E  S  G  N  I  N  Q  D  F  T  A  E  E  I  G  G  W  E  F  D  E  L  E  N  E  L  N  S  G  T  R  A  I  P  E  K  R  *  K  Y  L  M  I  K  L  *  E  I  F  Y  P  C  L  I  M  F  G  C  S  F  M  Y  L  F  C  V  N  S  R  T  C  G  T  A  F  H  I  R  I  M  *  K  L  C  *  D  D  Y  I  Q  I  C  S  R  L  D  P  V  S  Q  K  I  L  T  H  R  L  I  L  F  A  L  F  L  D  F  T :   K  *  *  </first_frame>
            <second_frame>  L  V  H  G  S  N  F  W  R  M  L  G  F  F  S  L  P  I  Q  R  P  K  T  R  R  P   : K  L  N  W  K  S  M  R  I  I  L  *  T  W  S  C  N  F  S  L  I  T  R :   K  S  *  G  L  Q  L  T  V  L  E  N  M  W  K  I  *  R  V  *  V  K   : A  A  Q  Q  K  K  L  V  C  L  P  V  N  Q  K  H  *  A  L  G  K  V  W  S  W  S  T  W  T  M  K  P  R :   L  *  P  P  L  A  *  S  T  T  *  W  S  S  S  M  L  N  T  G  K  Y  P   : G  K  M  I  Q  R  L  K  G  C  L  R  T  L  K  N  Y  E  K  N  L  N  L  L  R  D  R  N  W  K  W  R  S  R  M  P  P  P  K  R  E  M  L  H  L  I  I  F  L  M  K  I  N  Q  I  P  Q  G  R  Q  Q  K  P  L  K  L  G  R  M  R  K  T  N  H  L  L  P  K  Q  R  M  C  L  T  L  H  P  I  K  C  R  R  M  Y  Q  V  L  R  G  R  Q  *  K  P  P  Q  L  V  Q  R  R  K  R  N  Q  Q  L  R  V  L  S  K  C  M  K  Q  S  W  R  N  W  N  P  S  L  E  T  L  T  R  I  S  L  Q  K  R  L  V  A  G  N  L  M  N  W  K  M  N  *  I  L  G  L  A  Q  S  L  K  R  D  R  N  T  *  *  *  N  F  K  K  S  S  I  H  V  *  *  C  L  D  V  V  S  C  I  Y  S  V  *  I  R  E  L  A  E  L  H  F  I  S  E  S  C  R  N  F  A  R  M  I  I  S  K  F  V  V  D  *  T  R  *  A  K  K  Y  *  L  T  G  *  F  Y  L  R  Y  S  *  I  L   : Q  N  D  E </second_frame>
            <third_frame>   *  F  M  D  Q  I  F  G  G  C  L  G  S  S  V  F  L  Y  R  D  Q  R  Q  G  G  Q  :  S  *  I  G  K  A  *  G  L  F  C  E  L  G  L  A  T  S  L  *  L  R   : E  R  V  E  A  F  N  *  P  Y  *  K  I  C  G  K  F  E  E  F  R  *  R  :  Q  L  S  K  R  S  W  S  V  F  R  *  I  K  S  I  E  P  *  E  K  S  G  V  G  V  P  G  L  *  S  Q   : D  Y  N  H  L  *  R  S  R  Q  H  D  G  A  V  L  C  S  T  R  E  S  I  Q  :  E  R  *  S  K  D  *  R  A  V  *  E  H  *  K  I  T  R  R  I  *  I  Y  *  E  T  G  T  G  N  G  D  P  G  C  P  H  P  R  G  R  C  F  I  S  *  Y  S  *  *  K  *  I  R  S  R  K  E  G  N  R  S  P  *  N  W  D  E  *  G  K  Q  T  T  F  Y  Q  S  R  E  C  V  *  R  C  T  Q  *  S  A  G  E  C  I  K  F  C  E  E  D  N  R  S  P  H  S  W  C  K  G  G  K  E  T  S  S  Y  E  C  *  A  N  V  *  S  R  V  G  E  I  G  I  R  V  W  K  H  *  P  G  F  H  C  R  R  D  W  W  L  G  I  *  *  T  G  K  *  I  K  F  W  D  S  R  N  P  *  K  E  I  E  I  P  N  D  K  T  L  R  N  L  L  S  M  S  N  N  V  W  M  *  F  H  V  F  I  L  C  K  F  A  N  L  R  N  C  I  S  Y  Q  N  H  V  E  T  L  L  G  *  L  Y  P  N  L  *  S  T  R  P  G  K  P  K  N  I  N  S  Q  V  N  F  I  C  V  I  L  R  F  Y  :  K  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114G11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9945" stop="9866"/>
                    <exon start="9714" stop="9648"/>
                    <exon start="9558" stop="9491"/>
                    <exon start="9412" stop="9316"/>
                    <exon start="8845" stop="8775"/>
                    <exon start="8684" stop="8174"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSWIKFLEDAWVLQSSYTETKDKEAKVELEKHEDYFVNLVLQLLSDYEKELRPSIDRIRKYVENLKSLGEGSSAKEAGLSSGESKALSPRKSLELEYLDYEAKIITTFSVVDNMMEQFYAQHGKVSRKDDPKIKGLFENIEKLREEFESIERPELEMEIPDAPTQEGDASSHNIPDENKSDPARKATEAPETGTNEENKPPSTKAENVSNAAPNKVPENVSSSARKTIEAPTAGAKEEKKPAATSAEQMYEAELAKLESESGNINQDFTAEEIGGWEFDELENELNSGTRAIPEKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="20394" PGL_stop="10168"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20394" e_stop="20089"/>
            <exon e_start="19121" e_stop="18912"/>
            <exon e_start="17670" e_stop="17575"/>
            <exon e_start="17221" e_stop="17169"/>
            <exon e_start="17013" e_stop="16917"/>
            <exon e_start="16825" e_stop="16752"/>
            <exon e_start="15875" e_stop="15764"/>
            <exon e_start="14461" e_stop="14351"/>
            <exon e_start="13467" e_stop="13391"/>
            <exon e_start="12032" e_stop="11966"/>
            <exon e_start="11607" e_stop="11542"/>
            <exon e_start="10241" e_stop="10168"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.922" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.854" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.450" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.500" e_score="1.000"/>
          <exon-intron don_prob="0.867" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20394" e_stop="20089" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.964">
            <gDNA_intron_boundary i_start="20088" i_stop="19122" i_length="967"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19121" e_stop="18912" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.922" acc_prob="0.998">
            <gDNA_intron_boundary i_start="18911" i_stop="17671" i_length="1241"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17670" e_stop="17575" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="17574" i_stop="17222" i_length="353"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="17221" e_stop="17169" e_length="53"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.964">
            <gDNA_intron_boundary i_start="17168" i_stop="17014" i_length="155"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="17013" e_stop="16917" e_length="97"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.854">
            <gDNA_intron_boundary i_start="16916" i_stop="16826" i_length="91"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="16825" e_stop="16752" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="16751" i_stop="15876" i_length="876"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="15875" e_stop="15764" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.450" acc_prob="0.978">
            <gDNA_intron_boundary i_start="15763" i_stop="14462" i_length="1302"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="14461" e_stop="14351" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.500">
            <gDNA_intron_boundary i_start="14350" i_stop="13468" i_length="883"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="13467" e_stop="13391" e_length="77"/>
          </exon>
          <intron i_serial="9" don_prob="0.867" acc_prob="0.891">
            <gDNA_intron_boundary i_start="13390" i_stop="12033" i_length="1358"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="12032" e_stop="11966" e_length="67"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11965" i_stop="11608" i_length="358"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="11607" e_stop="11542" e_length="66"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="11541" i_stop="10242" i_length="1300"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="10241" e_stop="10168" e_length="74"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20394" stop="20089"/>
              <exon start="19121" stop="18912"/>
              <exon start="17670" stop="17575"/>
              <exon start="17221" stop="17169"/>
              <exon start="17013" stop="17005"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20391" stop="20147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305372" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20379" stop="20089"/>
              <exon start="19121" stop="19058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330105" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20379" stop="20091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20257" stop="20089"/>
              <exon start="19121" stop="18912"/>
              <exon start="17670" stop="17615"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20111" stop="20089"/>
              <exon start="19121" stop="18912"/>
              <exon start="17670" stop="17575"/>
              <exon start="17221" stop="17169"/>
              <exon start="17013" stop="16917"/>
              <exon start="16825" stop="16752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19121" stop="18912"/>
              <exon start="17670" stop="17575"/>
              <exon start="17221" stop="17169"/>
              <exon start="17013" stop="16932"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245103" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18985" stop="18912"/>
              <exon start="17670" stop="17575"/>
              <exon start="17221" stop="17169"/>
              <exon start="17013" stop="16917"/>
              <exon start="16825" stop="16752"/>
              <exon start="15875" stop="15764"/>
              <exon start="14461" stop="14373"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16776" stop="16752"/>
              <exon start="15875" stop="15764"/>
              <exon start="14461" stop="14351"/>
              <exon start="13467" stop="13391"/>
              <exon start="12032" stop="11966"/>
              <exon start="11607" stop="11542"/>
              <exon start="10241" stop="10168"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257906" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTTTGTTAACAGCACAAACACTTTTGCACCATCTCTATGCACGATCTTCCTATTCACTATAAATAACAATAATAATCGCCGAATCAACGCCATTTTTATAACTTCGTTTGATTCATCTTCTTCATCGGTGTTGCGGAAAACCCTAATTTGAAATTGGAGAAATACGAAAATGTCGTGGTTAAGATCAGCTATGAACAAAGCAGTAGAGGTTGGAAATAGCAACCTTACACGCACTGTCAGAAATTACGCCGATTCCGTTGGTCACGCAGTCGCTGAAGGAGCCAAAATTTTACAGGATCGCATT : GGGAATAGGAACTTCAAAAGCTTTAAACAGACGGTGCAAAGATTGGAAGAAGCTTCTATTTCCTGCAAGGGACCAGAGAGAGTTCAGTTAATGAAAAGGTGGTTAGCTGCACTTAAAGCAATTGATAACATGTCAGAGGTTTCTGTTGAAGATAAAGAGAAGAACAATGAGCAGCAGCATCCTTCCGAGGAAGTAAGAAAACAACCACTG : GTTCTCTATTATGATTCTGAGATGGGCGGTGAGCCACTGAACTTTCGCGATGTCTTTCTCTATAGTAAAGGTTTGGAGGGCATGGTGATATGTATG : ATTCTTGAAGCGCCAAACGAAGAGGAAATCTCTCTCCTTCTTGAATTATTTGA : ACTCTGTCTCACAGGGGGAAAAGCGGTTCACAGTGCAATAATCAGCAGCATCCAAGATTTGTCAAATGCTTTCTCAAACTACCAAGACGAAGTATTG : GTAAAACGTGAGGAGCTATTGCAGTTCGCAGAAAGTGCCATCACAGGGTTGAAATCTAATGCAGATCTCGGAAG : AATTGATGCCGAAGTCTCTACATTGAATAAACAACTTGATGAAATAAAAGCAGTAAAGGACGCAAGTGGGGATCATGAAACAATATCCAAAGAGACTGCGGCTTCAATAGAG : GCACTGAAAGTAGCACTTGCTCATATTCGGGTCTGTTCCAGATTAGAAGGGCTTCTACTGAAGAAAAAATCTCTTAAATACGGGGACTCTCCGGAAGTCCATTCTCAAAAG : GTTGATAAGTTGAAACTCCTATCCGAATCTCTTGTTAGATCCGCCAACAAAGCTGAAAAGGAGATCTCAGATGACAG : AATTCAGAAAGAGGAGGCACTAAAATTTCGTGTTGCCAAGACCAGTGAAGTGGGTGAAATAGAAAAG : GAATTAGCAGCTGAGATCTCAGCTCTTGAGAAACAAAGGAATGAAATTGAAGCTCAACTGAAGCAG : GTCAATATCTCCTTGGCAGCAGCTAGTGCACGCCTTCATAATGCCCGAGAAGAGAGGGACCAATTCTATGACGC</gDNA_template>
            <first_frame> N  F  V  N  S  T  N  T  F  A  P  S  L  C  T  I  F  L  F  T  I  N  N  N  N  N  R  R  I  N  A  I  F  I  T  S  F  D  S  S  S  S  S  V  L  R  K  T  L  I  *  N  W  R  N  T  K  M  S  W  L  R  S  A  M  N  K  A  V  E  V  G  N  S  N  L  T  R  T  V  R  N  Y  A  D  S  V  G  H  A  V  A  E  G  A  K  I  L  Q  D  R  I  :  G  N  R  N  F  K  S  F  K  Q  T  V  Q  R  L  E  E  A  S  I  S  C  K  G  P  E  R  V  Q  L  M  K  R  W  L  A  A  L  K  A  I  D  N  M  S  E  V  S  V  E  D  K  E  K  N  N  E  Q  Q  H  P  S  E  E  V  R  K  Q  P  L  :  V  L  Y  Y  D  S  E  M  G  G  E  P  L  N  F  R  D  V  F  L  Y  S  K  G  L  E  G  M  V  I  C  M  :  I  L  E  A  P  N  E  E  E  I  S  L  L  L  E  L  F  E :   L  C  L  T  G  G  K  A  V  H  S  A  I  I  S  S  I  Q  D  L  S  N  A  F  S  N  Y  Q  D  E  V  L  :  V  K  R  E  E  L  L  Q  F  A  E  S  A  I  T  G  L  K  S  N  A  D  L  G  R :   I  D  A  E  V  S  T  L  N  K  Q  L  D  E  I  K  A  V  K  D  A  S  G  D  H  E  T  I  S  K  E  T  A  A  S  I  E  :  A  L  K  V  A  L  A  H  I  R  V  C  S  R  L  E  G  L  L  L  K  K  K  S  L  K  Y  G  D  S  P  E  V  H  S  Q  K  :  V  D  K  L  K  L  L  S  E  S  L  V  R  S  A  N  K  A  E  K  E  I  S  D  D  R :   I  Q  K  E  E  A  L  K  F  R  V  A  K  T  S  E  V  G  E  I  E  K  :  E  L  A  A  E  I  S  A  L  E  K  Q  R  N  E  I  E  A  Q  L  K  Q  :  V  N  I  S  L  A  A  A  S  A  R  L  H  N  A  R  E  E  R  D  Q  F  Y  D   </first_frame>
            <second_frame>  T  L  L  T  A  Q  T  L  L  H  H  L  Y  A  R  S  S  Y  S  L  *  I  T  I  I  I  A  E  S  T  P  F  L  *  L  R  L  I  H  L  L  H  R  C  C  G  K  P  *  F  E  I  G  E  I  R  K  C  R  G  *  D  Q  L  *  T  K  Q  *  R  L  E  I  A  T  L  H  A  L  S  E  I  T  P  I  P  L  V  T  Q  S  L  K  E  P  K  F  Y  R  I  A  L :   G  I  G  T  S  K  A  L  N  R  R  C  K  D  W  K  K  L  L  F  P  A  R  D  Q  R  E  F  S  *  *  K  G  G  *  L  H  L  K  Q  L  I  T  C  Q  R  F  L  L  K  I  K  R  R  T  M  S  S  S  I  L  P  R  K  *  E  N  N  H  W :   F  S  I  M  I  L  R  W  A  V  S  H  *  T  F  A  M  S  F  S  I  V  K  V  W  R  A  W  *  Y  V  * :   F  L  K  R  Q  T  K  R  K  S  L  S  F  L  N  Y  L   : N  S  V  S  Q  G  E  K  R  F  T  V  Q  *  S  A  A  S  K  I  C  Q  M  L  S  Q  T  T  K  T  K  Y  W :   *  N  V  R  S  Y  C  S  S  Q  K  V  P  S  Q  G  *  N  L  M  Q  I  S  E   : E  L  M  P  K  S  L  H  *  I  N  N  L  M  K  *  K  Q  *  R  T  Q  V  G  I  M  K  Q  Y  P  K  R  L  R  L  Q  *  R :   H  *  K  *  H  L  L  I  F  G  S  V  P  D  *  K  G  F  Y  *  R  K  N  L  L  N  T  G  T  L  R  K  S  I  L  K  R :   L  I  S  *  N  S  Y  P  N  L  L  L  D  P  P  T  K  L  K  R  R  S  Q  M  T   : E  F  R  K  R  R  H  *  N  F  V  L  P  R  P  V  K  W  V  K  *  K  R :   N  *  Q  L  R  S  Q  L  L  R  N  K  G  M  K  L  K  L  N  *  S  R :   S  I  S  P  W  Q  Q  L  V  H  A  F  I  M  P  E  K  R  G  T  N  S  M  T  </second_frame>
            <third_frame>   L  C  *  Q  H  K  H  F  C  T  I  S  M  H  D  L  P  I  H  Y  K  *  Q  *  *  S  P  N  Q  R  H  F  Y  N  F  V  *  F  I  F  F  I  G  V  A  E  N  P  N  L  K  L  E  K  Y  E  N  V  V  V  K  I  S  Y  E  Q  S  S  R  G  W  K  *  Q  P  Y  T  H  C  Q  K  L  R  R  F  R  W  S  R  S  R  *  R  S  Q  N  F  T  G  S  H   : W  E  *  E  L  Q  K  L  *  T  D  G  A  K  I  G  R  S  F  Y  F  L  Q  G  T  R  E  S  S  V  N  E  K  V  V  S  C  T  *  S  N  *  *  H  V  R  G  F  C  *  R  *  R  E  E  Q  *  A  A  A  S  F  R  G  S  K  K  T  T  T   : G  S  L  L  *  F  *  D  G  R  *  A  T  E  L  S  R  C  L  S  L  *  *  R  F  G  G  H  G  D  M  Y   : D  S  *  S  A  K  R  R  G  N  L  S  P  S  *  I  I  *  :  T  L  S  H  R  G  K  S  G  S  Q  C  N  N  Q  Q  H  P  R  F  V  K  C  F  L  K  L  P  R  R  S  I   : G  K  T  *  G  A  I  A  V  R  R  K  C  H  H  R  V  E  I  *  C  R  S  R  K  :  N  *  C  R  S  L  Y  I  E  *  T  T  *  *  N  K  S  S  K  G  R  K  W  G  S  *  N  N  I  Q  R  D  C  G  F  N  R   : G  T  E  S  S  T  C  S  Y  S  G  L  F  Q  I  R  R  A  S  T  E  E  K  I  S  *  I  R  G  L  S  G  S  P  F  S  K   : G  *  *  V  E  T  P  I  R  I  S  C  *  I  R  Q  Q  S  *  K  G  D  L  R  *  Q  :  N  S  E  R  G  G  T  K  I  S  C  C  Q  D  Q  *  S  G  *  N  R  K   : G  I  S  S  *  D  L  S  S  *  E  T  K  E  *  N  *  S  S  T  E  A   : G  Q  Y  L  L  G  S  S  *  C  T  P  S  *  C  P  R  R  E  G  P  I  L  *  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0114G11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20241" stop="20089"/>
                    <exon start="19121" stop="18912"/>
                    <exon start="17670" stop="17575"/>
                    <exon start="17221" stop="17169"/>
                    <exon start="17013" stop="16917"/>
                    <exon start="16825" stop="16752"/>
                    <exon start="15875" stop="15764"/>
                    <exon start="14461" stop="14351"/>
                    <exon start="13467" stop="13391"/>
                    <exon start="12032" stop="11966"/>
                    <exon start="11607" stop="11542"/>
                    <exon start="10241" stop="10170"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1188</number_coding_nucleotides>
                  <number_encoded_amino_acids>396</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWRNTKMSWLRSAMNKAVEVGNSNLTRTVRNYADSVGHAVAEGAKILQDRIGNRNFKSFKQTVQRLEEASISCKGPERVQLMKRWLAALKAIDNMSEVSVEDKEKNNEQQHPSEEVRKQPLVLYYDSEMGGEPLNFRDVFLYSKGLEGMVICMILEAPNEEEISLLLELFELCLTGGKAVHSAIISSIQDLSNAFSNYQDEVLVKREELLQFAESAITGLKSNADLGRIDAEVSTLNKQLDEIKAVKDASGDHETISKETAASIEALKVALAHIRVCSRLEGLLLKKKSLKYGDSPEVHSQKVDKLKLLSESLVRSANKAEKEISDDRIQKEEALKFRVAKTSEVGEIEKELAAEISALEKQRNEIEAQLKQVNISLAAASARLHNAREERDQFYD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 26 chains have been computed
$ 
$ memory statistics:
$ 36488 bytes spliced alignments in total
$ 17 spliced alignments have been stored
$ 2146 bytes was the average size of a spliced alignment
$ 7808 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3904 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 28 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:20:17
-->
