<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:30:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6663" ref_strand="+" ref_description="SGN-M6663 C2_At1g19600 [cosii_markers]">
      <seq>tttcccagttgcagttgaagagaccaatccaccttagctatatgatctactagggcaaatggttgtagtccaagtacaactggtgcacctatatttacactttcaaagtgaaagtgtaaatataggtgcaccagttgtacttcgactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttgaagtatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccatattgaagactatagctggaggtagcgttgcaaatacaattagagggttggctgctggttttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcttttacaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccatgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttctaagtggctggtactgagatatgccatactgaatgtagaagttattaaggtggccatcaaaatagcaaaggaagaaggtctttttgtttctctagatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgcttcgcaaacgaggatgaagcaactgagctgctaaggggtgaagagaaagcagatcctgatgcagcacttgaatatttggctaaatattgcaagtgggctgttgtcaccttagctcaaaacggatgcattgcgaaacatgagaaagagtttgtgcgtgttccagcaattggcgaagcgaaagttactgatgctacaggtgcaggagatctgtttgcaagtggatttttgtatggattggtaagaggactgtcactggaggaatgttgtcgggtgggttcttgcagcggtggttctgtgattcgatctcttgggggtgaggtaacacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8850" stop="4850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8550" g_stop="8418" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="235" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="499" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="571" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="610" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="718" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="816" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="928" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5331" g_stop="5150" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="929" r_stop="1110" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-M6663" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1008</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6663" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8550" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</genome_strand>
        <mrna_strand>TCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTCGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG...............................................................................................................................................................................................................TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG............................................................................................................GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6663-2" ref_strand="+" ref_description="SGN-M6663-2 C2_At1g19600-2 [cosii_markers]">
      <seq>tgggagttgaaattcgaccagccaccattaatggtgaaaatcacagtgaaagtgtaaatataggtgcaccagttgtacttggactacaaccatttgccctagtagatcatatagctaaggtggattggtctcttctctcccaaattcccggtgaacgtggtggctctttcccagttgcagttgaagagttaaagcatatactcaacgagcttaacgcccatatccttccttctactgacaatgaatccctattgaagactatagctggaggtagtgttgcaaacacaattagagggttggctgctggctttgggattagtagtgggatcattggggcttgtggcgaagatgaagaaggtaaattatttatgagcaacatgggcctttccaaagtggatctctcaagattgagattgaagaatggaactacagctcagtgtgtttgtctggttgacgaagttggcaatcgtaccatgcgtccctgtttgtctggctctgtgaaagttcaggcagatgaactgaaaagagaggacttcaaaggttccaagtggttggtactgagatatgccatactgaatgtagaagttattaaggcggccatcaaaatagcaaaggaagaaggcctttttgtttctcttgatcttgccagctttgagatggtgaggaagtttaaatcacctctaattgaattattggagtcgggaaacatagacctttgctttgcaaacgaggacgaagcaactgagctactaagggatgaagagaaagcagatcctgatgcagcacttgaatatttggctaaacattgcaagtgggctgtagtcaccttagctcaaaacggatgcattgcgaaacataagaaagagtttgtacgtgttccaagcgattggcgaagcgaaagttactgatgctacaggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="8890" stop="4981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8590" g_stop="8418" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7201" g_stop="6938" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="437" r_length="264" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82">
            <donor d_prob="0.976" d_score="0.98"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="6855" g_stop="6784" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="509" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="6671" g_stop="6633" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="548" r_length="39" r_score="0.974"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.813" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6425" g_stop="6318" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="656" r_length="108" r_score="0.963"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290">
            <donor d_prob="0.992" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6027" g_stop="5930" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="754" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108">
            <donor d_prob="0.995" d_score="0.94"/>
            <acceptor a_prob="0.937" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5821" g_stop="5710" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="755" r_stop="866" r_length="112" r_score="0.964"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378">
            <donor d_prob="0.964" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5331" g_stop="5281" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="867" r_stop="918" r_length="52" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-M6663-2" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>917</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6663-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8590" e_stop="8418"/>
          <exon e_start="7201" e_stop="6938"/>
          <exon e_start="6855" e_stop="6784"/>
          <exon e_start="6671" e_stop="6633"/>
          <exon e_start="6425" e_stop="6318"/>
          <exon e_start="6027" e_stop="5930"/>
          <exon e_start="5821" e_stop="5710"/>
          <exon e_start="5331" e_stop="5281"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCAGTACTTACTCTTTCTTGTTTTTTTTTTTGTTATATACAGCTTTTGTGATAAAGATGGAATCTTTTTTATTGTTTGGGGGTTTTAAGATTTGGGGTTGGTTTGATTTTGATATAATTGATTGTTTTATTGCCAATTGCCTATAAAAAATTAGATCTTTGAATTCTGTGTTGCTTTAACTAATGTATGTGTAAATTTTCAGCTAGCTTGTATGTTTTAGTTCTACTTTTTTTTTTGCTGTAGATTCTATTGCTCTTTGGATCTTTTATTCTCTGTTTTCGTGTGTGTATATGTGTTTAGTTATCTTGTTTTAGTGTTGGGGGTGGGATTTGCTGCATTTGAGTTGAGTGTCTCGGAAGTGGTAAGGTCTGCGTACGCTATATCCTCCCAGACCCCAGTTGTGGGATTTTACTGAGTATTTTGTTGTTGGTTTAGTTGTGGGGTGGGACAGGGAGTTTGGTAGGTGAGTTCGATCGTTGTTGATAAGAATTTGTTGAGTGGTTTTTAATTTCATTGGAATGGTATGGTGACAATGTCAAAATCCAAATAGATCAATTTATTGTATTAGCTAAAGAGAGAATAACTGCAAATCAAGAACGAACCCTTTTTTGCTGATGAAGTTCGATGTATCATAGAATCTGAAGGGGGTTATGCGTGAGATGATCTCGGTTTCTCTATATATCATGAGGTTATGTCTTTTGTGATTCTAGAATTGGATATTGTAGTTTGATGATTGTAGAATAACCTTTTGGGTTTCGGGTTTACAACCACTGTCAATCTGAGACTGAAAATGAGGGAATTTGGCTCGCATTTGATACTTTGAACTGAGAGGATGTTTTGGTTGAATTGATAAAAATGCATTTTACATTTGATTTATTAATTTCCCTTTTCTCTAATCCATGTGTTTAATTTGTTAAAAGATTGTGTTACTGCATATGTTACCCTTCACTCCGCCTTTGTGCGAATGGTTCCAAGACCGGTGGATGAATGCAGTAGTAAAATAGTCTGAACTATCATGTGAAAACTGATTTAAAATATAGGATTCATATTGCCGACGGTTGATGCGTAGTTGGTTAGCTTATCTCGCCCGTAACTGCCAGCTAGGAAAGGCTATTGCATGCTAAAATGAAATAACCATGAAATATTATGTTTGCTACAAATGTCCTTATTTGTTATAAACAAGACTCTGATCCATTTTGTTTCCTGTTGTTAACTAAAGGTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAGGTGAATACATTTGTTGGATATTAGGATTGTGTATATAGATGATTCCCCGATTTTCTAATACTATGCAATTTGTTCTATACAGTGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAGGTGATTTCTACTTTCATCTAGTCAAATTCAGTGGAGGGTAATGATTCTAATAACGTGTAAAATATTAAGCGAAGTGACGTACATTTGTCTTATTATTTCCTTGCTTTATCAGGCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAGGTGAGGCTTCCTTATTTGATATTTTAAACTCTTATCTCCATCAGTTTTTATACTATTAGTTACTACAATGTTGTATGTTTCCCAGTAACATGTAGAGTTTGCTGATCCATTTATGAAAACGATTTAATTTTTACTCGTTGGAGAACTACTCTGGCGAATTGTAGCATTGAAAATTTCCACTTATTCGCCTCTACTTTTTTGTAACAGTGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAGGTAATTGTTCGCATAGGCTGCATGGTATTATTAGAAGTTTAGTATTTCATTATTTGCTTCGAGTTTTTGAAGCAGAAACAGTTACATGGCTTCTCAATTGATACAAAGATCTTATTTCATTCTCTTTATTTGAGCTGTCCATACTCCATAGTTGGAAACATATATTAGAACACACGTATGAACGGAAGTCTAATTACATTGTTCCTGTTGAAATATGTCTGATCTGTGTTGATGATAATAGGATTTGTTGTTTTTTCTTTTGTTCCTTTATGATATTCTTAATATGGCAGATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAGGTTATTATTTGTCTTCGCGTTAAAACTAAGAAATTATGTTTATTTACTACTATATTGATAGCCAATTCATGCAAATGAAGATCTCCGTCTTTCCAACATTTGGTGTAGGGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAGGTATCTGTAATCCTTCCCCACCTGCAGTCTATCTTTAAGACAAAACGATTGAAGAAGAATCTTTTGTTCTGATCTTCTGGATGTTCATATCATTTAAAGATGGTAATCGAGAGTCCCCCAACTAAGTGGTTCTTGTCATTGTTATAGTAAACTAGTAGCAATTTGAACTTTTCTCTCCATTTCATTTTTATGTGATTATATTTGACTGGCCGTGGAGTTTAACGAAGAAGTAATTTTTAAATAAACTTGTGGTTTTAAACATTATGTAGAGAGTCATCTAAAAAGGAAAGAGTATCACATAAGTTGATGATTTGTGATCTTTACGTAGTGTTTTTTATTAGGATTATTATAAACATGAAGTATTATTTTGGTTTTCAGTTTGTGCGTGTTCC-AGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGT</genome_strand>
        <mrna_strand>TGGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCACAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAGTTGAAGAGTTAAAGCATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCCTATTGAAGACTATAGCTGGAGGTAGTGTTGCAAACACAATTAGAGGGTTGGCTGCTGGCTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCCTTTCCAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG..................................................................................TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCCTGTTTGTCTGGCTCTGTGAAAGTTCAG................................................................................................................GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCCAAG...............................................................................................................................................................................................................TGGTTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGCGGCCATCAAAATAGCAAAGGAAGAAGGCCTTTTTGTTTCTCTTGATCTTGCCAGCTTTGAG..................................................................................................................................................................................................................................................................................................ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTTGCAAACGAGGACGAAGCAACTGAGCTACTAAG............................................................................................................GGATGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAACATTGCAAGTGGGCTGTAGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATAAGAAAGAG..........................................................................................................................................................................................................................................................................................................................................................................................TTTGTACGTGTTCCAAGCGATTGGCGAAGCGAAAGTTACTGATGCTACAGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2219" ref_strand="+" ref_description="SGN-M2219 T1716 [cos_markers]">
      <seq>ttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgttactgttggtcatagtgctgttgtacatggctgcaccat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="16935" stop="12072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16635" g_stop="16454" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="326" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="452" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.935" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12372" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="483" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-M2219" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16635" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCAT</genome_strand>
        <mrna_strand>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8590" PGL_stop="5150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8590" e_stop="8418"/>
            <exon e_start="7201" e_stop="6938"/>
            <exon e_start="6855" e_stop="6784"/>
            <exon e_start="6671" e_stop="6633"/>
            <exon e_start="6425" e_stop="6318"/>
            <exon e_start="6027" e_stop="5930"/>
            <exon e_start="5821" e_stop="5710"/>
            <exon e_start="5331" e_stop="5150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.993" e_score="0.994"/>
          <exon-intron don_prob="0.976" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.813" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.937" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="8590" e_stop="8418" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.993">
            <gDNA_intron_boundary i_start="8417" i_stop="7202" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7201" e_stop="6938" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.976" acc_prob="0.957">
            <gDNA_intron_boundary i_start="6937" i_stop="6856" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="6855" e_stop="6784" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="6783" i_stop="6672" i_length="112"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="6671" e_stop="6633" e_length="39"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.813">
            <gDNA_intron_boundary i_start="6632" i_stop="6426" i_length="207"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6425" e_stop="6318" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.992" acc_prob="0.997">
            <gDNA_intron_boundary i_start="6317" i_stop="6028" i_length="290"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="6027" e_stop="5930" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.937">
            <gDNA_intron_boundary i_start="5929" i_stop="5822" i_length="108"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5821" e_stop="5710" e_length="112"/>
          </exon>
          <intron i_serial="7" don_prob="0.964" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5709" i_stop="5332" i_length="378"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="5331" e_stop="5150" e_length="182"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8590" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5281"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6663-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8550" stop="8418"/>
              <exon start="7201" stop="6938"/>
              <exon start="6855" stop="6784"/>
              <exon start="6671" stop="6633"/>
              <exon start="6425" stop="6318"/>
              <exon start="6027" stop="5930"/>
              <exon start="5821" stop="5710"/>
              <exon start="5331" stop="5150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6663" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGGAGTTGAAATTCGACCAGCCACCATTAATGGTGAAAATCAAAGTGAAAGTGTAAATATAGGTGCACCAGTTGTACTTGGACTACAACCATTTGCCCTAGTAGATCATATAGCTAAGGTGGATTGGTCTCTTCTCTCCCAAATTCCCGGTGAACGTGGTGGCTCTTTCCCA : GTTGCAGTTGAAGAGTTGAAGTATATACTCAACGAGCTTAACGCCCATATCCTTCCTTCTACTGACAATGAATCCATATTGAAGACTATAGCTGGAGGTAGCGTTGCAAATACAATTAGAGGGTTGGCTGCTGGTTTTGGGATTAGTAGTGGGATCATTGGGGCTTGTGGCGAAGATGAAGAAGGTAAATTATTTATGAGCAACATGGGCTTTTACAAAGTGGATCTCTCAAGATTGAGATTGAAGAATGGAACTACAGCTCAG : TGTGTTTGTCTGGTTGACGAAGTTGGCAATCGTACCATGCGTCCATGTTTGTCTGGCTCTGTGAAAGTTCAG : GCAGATGAACTGAAAAGAGAGGACTTCAAAGGTTCTAAG : TGGCTGGTACTGAGATATGCCATACTGAATGTAGAAGTTATTAAGGTGGCCATCAAAATAGCAAAGGAAGAAGGTCTTTTTGTTTCTCTAGATCTTGCCAGCTTTGAG : ATGGTGAGGAAGTTTAAATCACCTCTAATTGAATTATTGGAGTCGGGAAACATAGACCTTTGCTTCGCAAACGAGGATGAAGCAACTGAGCTGCTAAG : GGGTGAAGAGAAAGCAGATCCTGATGCAGCACTTGAATATTTGGCTAAATATTGCAAGTGGGCTGTTGTCACCTTAGCTCAAAACGGATGCATTGCGAAACATGAGAAAGAG : TTTGTGCGTGTTCCAGCAATTGGCGAAGCGAAAGTTACTGATGCTACAGGTGCAGGAGATCTGTTTGCAAGTGGATTTTTGTATGGATTGGTAAGAGGACTGTCACTGGAGGAATGTTGTCGGGTGGGTTCTTGCAGCGGTGGTTCTGTGATTCGATCTCTTGGGGGTGAGGTAACACCTGA</gDNA_template>
            <first_frame> W  E  L  K  F  D  Q  P  P  L  M  V  K  I  K  V  K  V  *  I  *  V  H  Q  L  Y  L  D  Y  N  H  L  P  *  *  I  I  *  L  R  W  I  G  L  F  S  P  K  F  P  V  N  V  V  A  L  S  Q :   L  Q  L  K  S  *  S  I  Y  S  T  S  L  T  P  I  S  F  L  L  L  T  M  N  P  Y  *  R  L  *  L  E  V  A  L  Q  I  Q  L  E  G  W  L  L  V  L  G  L  V  V  G  S  L  G  L  V  A  K  M  K  K  V  N  Y  L  *  A  T  W  A  F  T  K  W  I  S  Q  D  *  D  *  R  M  E  L  Q  L  S :   V  F  V  W  L  T  K  L  A  I  V  P  C  V  H  V  C  L  A  L  *  K  F  R :   Q  M  N  *  K  E  R  T  S  K  V  L  S :   G  W  Y  *  D  M  P  Y  *  M  *  K  L  L  R  W  P  S  K  *  Q  R  K  K  V  F  L  F  L  *  I  L  P  A  L  R :   W  *  G  S  L  N  H  L  *  L  N  Y  W  S  R  E  T  *  T  F  A  S  Q  T  R  M  K  Q  L  S  C  *   : G  V  K  R  K  Q  I  L  M  Q  H  L  N  I  W  L  N  I  A  S  G  L  L  S  P  *  L  K  T  D  A  L  R  N  M  R  K  S :   L  C  V  F  Q  Q  L  A  K  R  K  L  L  M  L  Q  V  Q  E  I  C  L  Q  V  D  F  C  M  D  W  *  E  D  C  H  W  R  N  V  V  G  W  V  L  A  A  V  V  L  *  F  D  L  L  G  V  R  *  H  L  </first_frame>
            <second_frame>  G  S  *  N  S  T  S  H  H  *  W  *  K  S  K  *  K  C  K  Y  R  C  T  S  C  T  W  T  T  T  I  C  P  S  R  S  Y  S  *  G  G  L  V  S  S  L  P  N  S  R  *  T  W  W  L  F  P   : S  C  S  *  R  V  E  V  Y  T  Q  R  A  *  R  P  Y  P  S  F  Y  *  Q  *  I  H  I  E  D  Y  S  W  R  *  R  C  K  Y  N  *  R  V  G  C  W  F  W  D  *  *  W  D  H  W  G  L  W  R  R  *  R  R  *  I  I  Y  E  Q  H  G  L  L  Q  S  G  S  L  K  I  E  I  E  E  W  N  Y  S  S   : V  C  L  S  G  *  R  S  W  Q  S  Y  H  A  S  M  F  V  W  L  C  E  S  S   : G  R  *  T  E  K  R  G  L  Q  R  F  *   : V  A  G  T  E  I  C  H  T  E  C  R  S  Y  *  G  G  H  Q  N  S  K  G  R  R  S  F  C  F  S  R  S  C  Q  L  *   : D  G  E  E  V  *  I  T  S  N  *  I  I  G  V  G  K  H  R  P  L  L  R  K  R  G  *  S  N  *  A  A  K  :  G  *  R  E  S  R  S  *  C  S  T  *  I  F  G  *  I  L  Q  V  G  C  C  H  L  S  S  K  R  M  H  C  E  T  *  E  R   : V  C  A  C  S  S  N  W  R  S  E  S  Y  *  C  Y  R  C  R  R  S  V  C  K  W  I  F  V  W  I  G  K  R  T  V  T  G  G  M  L  S  G  G  F  L  Q  R  W  F  C  D  S  I  S  W  G  *  G  N  T  * </second_frame>
            <third_frame>   G  V  E  I  R  P  A  T  I  N  G  E  N  Q  S  E  S  V  N  I  G  A  P  V  V  L  G  L  Q  P  F  A  L  V  D  H  I  A  K  V  D  W  S  L  L  S  Q  I  P  G  E  R  G  G  S  F  P  :  V  A  V  E  E  L  K  Y  I  L  N  E  L  N  A  H  I  L  P  S  T  D  N  E  S  I  L  K  T  I  A  G  G  S  V  A  N  T  I  R  G  L  A  A  G  F  G  I  S  S  G  I  I  G  A  C  G  E  D  E  E  G  K  L  F  M  S  N  M  G  F  Y  K  V  D  L  S  R  L  R  L  K  N  G  T  T  A  Q  :  C  V  C  L  V  D  E  V  G  N  R  T  M  R  P  C  L  S  G  S  V  K  V  Q  :  A  D  E  L  K  R  E  D  F  K  G  S  K  :  W  L  V  L  R  Y  A  I  L  N  V  E  V  I  K  V  A  I  K  I  A  K  E  E  G  L  F  V  S  L  D  L  A  S  F  E  :  M  V  R  K  F  K  S  P  L  I  E  L  L  E  S  G  N  I  D  L  C  F  A  N  E  D  E  A  T  E  L  L  R :   G  E  E  K  A  D  P  D  A  A  L  E  Y  L  A  K  Y  C  K  W  A  V  V  T  L  A  Q  N  G  C  I  A  K  H  E  K  E  :  F  V  R  V  P  A  I  G  E  A  K  V  T  D  A  T  G  A  G  D  L  F  A  S  G  F  L  Y  G  L  V  R  G  L  S  L  E  E  C  C  R  V  G  S  C  S  G  G  S  V  I  R  S  L  G  G  E  V  T  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8588" stop="8418"/>
                    <exon start="7201" stop="6938"/>
                    <exon start="6855" stop="6784"/>
                    <exon start="6671" stop="6633"/>
                    <exon start="6425" stop="6318"/>
                    <exon start="6027" stop="5930"/>
                    <exon start="5821" stop="5710"/>
                    <exon start="5331" stop="5152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1044</number_coding_nucleotides>
                  <number_encoded_amino_acids>348</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVEIRPATINGENQSESVNIGAPVVLGLQPFALVDHIAKVDWSLLSQIPGERGGSFPVAVEELKYILNELNAHILPSTDNESILKTIAGGSVANTIRGLAAGFGISSGIIGACGEDEEGKLFMSNMGFYKVDLSRLRLKNGTTAQCVCLVDEVGNRTMRPCLSGSVKVQADELKREDFKGSKWLVLRYAILNVEVIKVAIKIAKEEGLFVSLDLASFEMVRKFKSPLIELLESGNIDLCFANEDEATELLRGEEKADPDAALEYLAKYCKWAVVTLAQNGCIAKHEKEFVRVPAIGEAKVTDATGAGDLFASGFLYGLVRGLSLEECCRVGSCSGGSVIRSLGGEVTP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16635" PGL_stop="12372"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16635" e_stop="16454"/>
            <exon e_start="14258" e_stop="14115"/>
            <exon e_start="12597" e_stop="12472"/>
            <exon e_start="12402" e_stop="12372"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.935" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16635" e_stop="16454" e_length="182"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14258" e_stop="14115" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12597" e_stop="12472" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.935">
            <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12402" e_stop="12372" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16635" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2219" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTCATAGTGCTGTTGTACATGGCTGCACCAT</gDNA_template>
            <first_frame> L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   S  *  C  C  C  T  W  L  H  H </first_frame>
            <second_frame>  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  H  S  A  V  V  H  G  C  T   </second_frame>
            <third_frame>   D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  I  V  L  L  Y  M  A  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16598" stop="16454"/>
                    <exon start="14258" stop="14115"/>
                    <exon start="12597" stop="12472"/>
                    <exon start="12402" stop="12374"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGHSAVVHGCT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 8 chains have been computed
$ 
$ memory statistics:
$ 6840 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 2280 bytes was the average size of a spliced alignment
$ 7024 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3512 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 8 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:30:26
-->
