<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 14:29:40"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313178" ref_strand="+" ref_description="SGN-U313178        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: AT5G42790.1 | Symbol: None | 20S proteasome alpha subunit F1 (PAF1), (gb:AAC32062.1) | chr5:17176278-17178298 REVERSE | Aliases: MJB21.17, MJB21_17 (evalue: 3e-114, score=408) genbank/nr: gi|22947842|gb|AAN07899.1| 20S proteasome alpha 6 subunit [Nicotiana benthamiana](evalue: 3e-128, score=461)">
      <seq>tccattaaagggaagagaagcatagagtcgagtttgtgattgcatttccgcaaaacggcatcgtttttttgatcgataatacttcgtagacacaatgtttagaaaccagtacgataccgatgtgacgacatggtcgccggcgggaaggttatttcaggtggagtatgcaatggaggcagtgaagcaaggttcggcggcgataggtttgagatcgaagacgcatgtgattctggcgtctgttaacaaggctaattctgagctgtcttctcaccagaagaagatcttcaaagttgatgaccacatcggagttgcaatcgctggacttactgctgacggccgtgtactttctcgttatatgcgtactgagtgtattaactatagttactcttatgagtcgccgttacctgtcgggcgtctggttgttcagcttgctgataaagctcaggtttgcactcaacgatcctggaaacggccttatggtgttggcttgcttgttggtggactggatgagtctggtgctcacctttattacaactgtcctagcggtaactactttgagtatcaagcttttgccattggatctcggtcacaagctgcaaaaacgtacttggaacgtaagtttgagactttcatggattcttcacgtgaaagcctgcttaaggatgcactctttgctctgagagaaactctgcaaggggaaaaactgacaagctccaattgcacggtggctgtggtaggagtaggagaggctttccataccctggacaaggaaaccatacaagcattgatcaatgaatttgagatagctggagaagatgctcctgccgaagtcccggaagaggctgcaactgatgaaccagcagcacctgaagaaggtgctgcccctgctgatcaaggagctgccccaatggatatttgataatgttatgtcttcctttaggcctcacttctttcatattcagagatttcttcttagaatgttgagattttgtgtggcacaatgggttatattttctgcttggatgttttattatgcaatcatgctttactttggtccaaacatctttaaaactcatgcttctgaagttgaactaaaaacagctttaagtgaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="52" stop="4653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="352" g_stop="796" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3688" g_stop="4349" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="1107" r_length="662" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1111" polyA_stop="1128"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-U313178" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1107</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="352" e_stop="796"/>
          <exon e_start="3688" e_stop="4349"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAGGTCTTTCGCTCAAACCCTAAATTGTTTTTGTTCTCTGCTTAGTGTGGTTTAATATATGCTGATCAGCTGAATCTTTGTTGTGATCGATGAAATGAGGGTTAGGGTTTTACTTTGGATTGAGAAATCCCCCTTTTAACTTGGTGGAAGATCAGTTGGATTCTTTTCCACAACTGCTAGTTATCCTGCCATTAGTTTCTCACTTGTTTATTCCTAGTCACTTCAAACCACAACAAATAAGCACCAAATCTAGGGAAGTTTGGGGTTTTGGGACAGGGTGGATGTCTATTACAAAGTTATTCCTTTGTTACTTCATTTCCTCCTATTGCCATTTAGTCTATGAGTCACAAGTTCAATGCTGTTAACACGACGAAACTAAAATGGTTAATCATGAAACAGGTGCTTTTGGATCCTTCCTTTTCCTCTTTTAGGTAAACTTGTGTACTACTCTCTAGGTATATTTAGTGGTGGAGTTGGAACTTATAAGAAGATTGCAATGTTTAATTTATAATATTATTCTGGATGAGGATCACTGTGGTGGTCCAAGGAGAAAAAACATGCTAGAGTTTTGTGCCTTAGTTCACAAAATCAGTCGTTGCCTATATGCTAGATGTTCATTTTTTCCACCGGCGGCAGCACTACCCTAGATTTCTTCAAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATATTTGTGTGGTTGTAAGACTTTTGATACGTGGTCTTGAAAGTGTCATAACATTTGCGTGGGCGTGTGGCTATAAAGACTTGTTGCCTAAGGGTAAAGTGGGACATTCGAGTTAGATTGTTTCCAAACTTAAGAGTGGTAACGTTCTTTTGGAATGGACTAATAAGCAATAGTGCCATTCTTTTTTAAAATGAGGGAGTATCTAAGTAAATGTTTCGGCAATTAGTTGAAGTTATTTAAATAAAGCTGGTATAATTAAATTCTATGTAAATACTTGGTATTCTGGTACTTTATGTGAATAAATATGACATAAACCCATAATCAACCAAATACTAGATCAGCCTGTACTTTTTAGTAGATTTAGTGAAAGAAACCCAAGTTAGGTTGACCAAATCCGGTGCGAGTGTTCGGTTGACATGGATGCCGCAACTTTTTGAAGGATCTGATCAACATAGATCATAATCAAATTGTAGCAATGGTTGCCCAAGAATTCCTCCCTTCCACTTTACATATGAGGTGCTCTAATTTGTTCCTGCATCTTGGTTAATGATTACTACTTTGACATTTCCCGTGGAATTAGTCGAGGTGCGTGAAAGCTGGCCCGGACACCACAATCATAAAAAAGGTGATGTTCAGAAAATTAGATACTATCTAGCAAAGGTGATCATGGTATTAAATGAGGTGCTCCTATAGGTAGTTTACCAGTAATAGTTAATGCTGCTGTTCAAGCTTTTGATAGTGCCACCACTCTAAATCTTTTCATAACAAAGCGTAGCGTATTCACTCTATTTTAATTGTGTGCCTAGTGTATGCAAACTATAGCATATTTTGCGGCTGTTTTATTTTGACAGCAGTTTCTCATATATCTGACATTCTGAAATTTCACTTAGCTCCTTAAACTGCAGAAATCTCCATTGAGGTAGAGAAAAATATAAACATGCGGGCGGTGAAGAAAAGCCAAGTATTAAGGCTAGTCCATGGTATAGTAGGCCAATTTTGTGGTGATACATTTTTAGGTTTCAGGGCATAAGCGGACATTCTTCCATTTAAGTCATTGAAGACTTGCCTTGATATGTAGACCCTGAATTGTGATGTTCTTTTCTTCTTTAATGATTTGGATATAGTAACTCCAGGTTTACTCAACCAGAGGTCTTACTAGTGTAATTTTTAGTTAGTTCAATAGCTCATATAAAAAGGTTCTAAAAGAGGACTCTTCGAGTTCTTCCCAAGGAAGCATATGGTTTATTTGGTTAAGCAGGCTGAACCTTTTACTTCTGCACAATCCGTTGTGTGCTTGTTGATAGGTTGCATCAACTGTGTGGTGGCTGATATCAGACTCTTCTCATAATTTGTCCCAGATTGTTTTCATGGAAGGAAAAAGTAGAGGTTGGCTCTTAGTGATGGTTGGTATGGATCATGTTTGAACAATTTTGTTCCATATAAAAATAGATAAATCAACATAGTTGTTTTAGTTCTTCACTTAGGGATGTGTTTGACAGTGAACCAGGATACCTACAAATGACACATATGGAGCCTTGGTCATGGGGAAAGAGTGTAGAAAGAATAAAAATCGTTTGGGTTTTGTTGTCGTGTCTTGGTGGATATTGAGCTGAATGCATTTCCCCCTCCATTTCTCAGGATATGAGGCTAACCGTCTGATTCAGAAGTTGATTTCCTATGTTTGCGCTTTATATCATCTTAACATTTGCTTTTGTGGCAGGTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</genome_strand>
        <mrna_strand>TCCATTAAAGGGAAGAGAAGCATAGAGTCGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTTTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGTCCTAGCGGTAACTACTTTGAGTATCAAGCTTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACGTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340776" ref_strand="+" ref_description="SGN-U340776        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaactccacaaatacttcagttatttttatagtactgctgaaatggtggaagtttttttcatctgggtaatagcttgaacacctttattgcccttttgtgcagttcttgtaaaatgcctgctcattttacacttgtcaaatatccattagatcaatttgaaacttgggtgaaaaaagttccatatttaagatttagcagagaaccatctaagttcaaattatgattttctgcacttttagtgcatgcaaatgcttaaacatattccataagagtttgtctttttctagagaagtaagtagtgttatatatcatattctttatgttttgtttgaatacaagtggggccactcgacactagtgcagatccagaagtcacactcatcatcacctaagatacaaccaatgaatgtataatacgacaaactcgctttgtttcactttataagataatatgattgggtgttgagtctaagaaagaaaagaagacctctacaatttgcggtcttaaatatgtcatgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="1149" stop="2271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1449" g_stop="1971" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-U340776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1449" e_stop="1971"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</genome_strand>
        <mrna_strand>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316689" ref_strand="+" ref_description="SGN-U316689        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: | Symbol: None | bacterial transferase hexapeptide repeat-containing protein, contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) | chr1:17323048-17325924 REVERSE | Aliases: F8G22.2, F8G22_2(evalue: 3e-125, score=445) genbank/nr: gi|15220153|ref|NP_175159.1| transferase hexapeptide repeat family [Arabidopsis thaliana] gi|25405192|pir||D96513 unknown protein, 6976-8939 [imported] - Arabidopsis thaliana gi|12325399|gb|AAG52641.1| unknown protein; 6976-8939 [Arabidopsis thaliana] gi|15028353|gb|AAK76653.1| unknown protein [Arabidopsis thaliana] gi|21280965|gb|AAM44984.1| unknown protein [Arabidopsis thaliana](evalue: 3e-123, score=445)">
      <seq>aggcatgtggtattcactattctgccctaccaattactctgtggaaagccttcatttctcactcaatcgtcccttttgctacacaaacaccttgactgcacagctctactgatcagaaagagggctaaaccgaaagaagaagaaggaggaggtcaaacatgggaaccctcgggaaagcaatttactccctgggatccatcgttcgagcgaccggcaaagctcttgatcgcgtcggaaatcgcctacaaggcagctcccacatagaggaacacctgtccaggcatcggactcttatgaacgtattcgataaagctccggtggtggataaggatgtatttgtagctccaggtgcctcagtcattggagatgtccatgtgggacgcaattcatctatttggtatggatgtgtactaagaggtgatgttaacagcatcagtgtcggatctggtaccaatatacaggacaactcccttgttcatgtggccaaatcaaatataagtcaaaaggtgctgcccaccatcatagggaacaatgtcactgttggtcatagtgctgttgtacatggctgcaccattgaggatgaggccttcattggtatgggagccacactgcttgatggtgttcatgtagagaaacatgccatggttgctgcgggagcccttgtgaaacagaacacaaggattccctccggagaggtatgggcaggcaatcccgctaagtttctgaggaagctgactgatgaagagatagccttcattgctcagtcagcaaccaactactgtaaccttgctcgtgtccatgcagctgagaattccaagtcctttgacgaaattgaatttgaaaagatgcttcgtaagaagtatgccaaacgtgatgaggaatatgattctatgattggtgttgtccgtgaaacacctcccgagcttgtacttcctgataatatcctccccgaaaaagctgctaagagcatcgcccaatgagatcagtgcccaagcaactctctctttttttgctttccagagatttattttacaccgtgagcatctgtatggagaacagtcatggatattggctgttacccttccaaataatatcaaacttattggatagcatcggtacgtcactgctttgtagttaagacttttgccccttatttcccagaaattcttcagcttggaaaaggaagttacgcccacaagtgcttgtaactctgagaaatcattttcaatagatttatttggtaaattgttattggaataacataaaacattgacagcacattccaaacatatttcttcaaaaaaaaaagcatttatgtttagcaatgccttcttgtttgagattccatgcattattgagatccatgactaagtaagcacagtgcatgtggggaaatcaatgacctaaagccaaggcatgttagctatagttatattaattataatattataaaggtagagatgattggctgattggggtatgaagagccaaaagatgagtaatttccccgtaaattcagccttgtcttattgtgtttttataatgacactgtatatgaatgattggcatctgttgaattgtttggttttgaatgtagtcatctttggtcaaaaaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="17026" stop="10195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16726" g_stop="16454" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.949" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14258" g_stop="14115" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="417" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12597" g_stop="12472" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="543" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.935" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12402" g_stop="12251" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="695" r_length="152" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.986" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11414" g_stop="10500" g_length="915"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="1609" r_length="914" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1610" polyA_stop="1632"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-U316689" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>1610</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U316689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16726" e_stop="16454"/>
          <exon e_start="14258" e_stop="14115"/>
          <exon e_start="12597" e_stop="12472"/>
          <exon e_start="12402" e_stop="12251"/>
          <exon e_start="11414" e_stop="10500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACCGTAATTTCCTTATTCTTAACCCTAGATCTCACCTCCACAATGTTTAATTTACCGATGTTTGAATATGATATTGTGTCGCGGATGCATCTATGCTTGTTTATGTTATTGCATTTTATCCTAATTTGTTAATACTTTTTGTCCGGGGATAAAATTGGTAGAGTTTGGAGTGTGGAGGTTAGAGCATTTAGAAATTGTTATTAATTTAGAAGTTGCCGTTAGTTAATAAGCTTATTTACCTTTTATCTTTATTGCTACTATGCTTGTTAATGTTATTGCATTTGAGCTTTGTTAGTACTCTTTGATTAGAAAAAAATGGTAAAATTTGGAGTGTGGAGGTCAGAACATCTGATTTTCAATGTGAGGGCATTAAGGAATTGATCCTAATTTTGAAGTTTTTGTGAGTTAATACGTTTATTTACCAATGTTTTAATATGATATTGGTGTCTCTTCTGCATCTACAATTGTATATGTTATTGCATTGAATCCTTTGGGCTTATTTAATACTCATTTGGGGGGGAATGGTATATTTTGGAGTGTGGAAGTTAGAACATCTGATTTTCAGTGTGAGGGAGGACATTTAGAAACAACATAAATATTTTATACATCAAACAAAAATAGACTGTAAATCACAACTTCTGTAGAAAAAATTTAGTGGAAGAAACATTCTGTGACTCCTCAATTAGTGCAAGTAGTATTCTTCTTGAGAATGTGAAACAAAGTCCTGTGAATGCGCAGTTCTCCTGTCTTCTTCAGGTCGTTATTGGAGTTCTTAGATTTGCACCTTTGAAATAGGTGTCCAGTCTCTATGAAGTTGTGCCTTAGGAAAAAGAACTAGGAAAGGGTGGAAAAGGCATTTTGGAGTGGGTTCTAATGCGTATTCATAGTCTTATGCTTATTTGAATTTTATGTTCAGTAATTTTAGGTAACTGATTCTGAGCGCAAATGAAGTACAAGAGAATGAAAGATGTAATATGTTATAATTGTCCTTGTAAGCATAAGAGATGCAGGCAATAACCTTAAGACTGGTATCTTATCAGAACTTTCCTTACGTCAAAACCTGTTTGCCTGGTCCTTTTGATTAATCCTTTTACTCATGTTAGGATTTTGATTCGCCGATTTGGTTGTTGTTAAGACACCAAAGACCCTTCTATTCTTAAAATTTGTTTGGTTGTATAAGAGAATCCCGGGAGAAAGCAAGTTAGATCTTAGGGCGAAAGCTCCATTGGATGGTTCATTCCAGTCTGAATAGCACCACTTATGCTTATAAAAGTGGTGCTATGTTTTGTCAATGCAGGAACCTGTCAAATAATGTGAGTAGAGTTAGCTACTTGCCTTAGAACCTATTTGCTTAATGATATTAGCTAAACCTATTCTAGCTGCATATTTAGCAGATTATCAAGGACTATTGGTGCTTATTTGAAGACTTTAGGCAGTTCATATGCCCACCAAGTATTTTGCTAATTAAAATAGTTGTGCCTTCAAATGGAGGAAGGATCACAAAGTTGGTTTTAGTTATTCCACAATTTTGTGGGATGTGGAATTGATCTCCCTATATCTTGGACAATTCTCACATCATGGCTAGATTTTGGGGTTGAGCTAAGTGTGAGATGCACTCCTTATCATGATTTTAGGGCCAAACACATCCCAATTTTGGTTAACCCGTTATTCATCCCCCATATTATGGTGTCCATACTCCAGTTGGCAAGCTCAGGCTTGTAGGGGTGTTAAGTTGTCCCATATCAGTTGTGAGATGTAGAACTGATCTCCTTATATAGTAATTGGACAACCCTCTCCTTGGGAGCTAACTTTTAGGGTTGAGTTAGGCCCAAGGTCCATTTCTTATTGGTTGGTTGTTGATTTAAGAGGGACCTGAAGTGGAATTTGTGTGGATTTCTTGCTAGTCTCCATTATGTATTGAGAACTTGATTGTTGTGCAAGTTGCTTCATTCTCCCTTCTAAAACATTGTACATTATCATTTTTATTTTAAAAATAAATGACATTAAGTGATGCTTTGTTGTCATATTTATTTACTCTCAAATGAATTGCTCCAGTTAGATACCTTCTCAAACCCCATCTACCTCATTAACAGAAAAATAAATGTCTGTTATTTAGCCTTCCTTCTAGTAATTAGACTCCTTTTTAAGTGGTCAATCTTTGATCTTAAACGTGGTTAGTTACTCCTTCTATGTTTCAGTGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAGGTAAGTATCTTATCACAGCATTGTTGTTGTTGGATGGTATGTTCAAGTGTTACATGTCAGTTTTGATTCTTAAGTAATAGCAGTTTTAACCTTGTTTCCTTGACTCATCCATTGTTCTAGTGAATAAAATTGTGAAGTTGGTATGATGCACGCTATCCATTAGCAAATAAGAGTTAGTCTTTTGTTGCTTGCTGGCCTTCTATATTTGTCCCTCAGTTTCTCCATATGGCAGTTAACATAGAGTACTAAAGTTGTGGTATGTGCAGTTTTCTTTGAATAGTGTAGCTCTTAATTTAGAACAAACTATTTGAAAATTGATCAGCAAATGAATGTTATTTTGGGGGCTTCTTGGCTAAGTTGCTCGGGTGCAGATCTAGAGATCCTTCATGATCTAATTTTTAATTTTTAAGGTTCAGGGATATAGATCCATGTATGGATTGGGGATTTGCCTAAAAATAATTAAAATATCTAAAAATAGAATTATAAAACCTAAATTATGAGATATTATGTGGAGAACTTGAGGAGAATCCTAGAAGGTGATTAAAGGAAAAAGAGTGATATGGAAATTTATATATAAAAGGTATTCCATTTTCTTCAATTTCACCTTAGCTTTTGTATCGATTACATAAATCATTAAAATTATTCCGACTTTCCCCATCAATTTTGGTCAAAGTACCTAAAATGAGTTGACCAAATCGTACACAGATCTCACACCCACACCTATGTCGTGTCGACACGGGTGCGGCACCAAAAGGGAAGAGTCCGAGCAACTTATTTTCTTCGAACTTGAACAGTTGTTTGTTTGAGTCACTAGTTTCAGATAAAAAAAACATTTTTTGTAGATCTTTTCCATCTTTTGGTTGTCGAACAGCAATTGCAACGGTCCGATTGACACTTCATTGGAATAGATGTTGGAAATCTCTTCTCCTCTTCCCTTCTCCTAGATATATTGTTCTTTCAGTCCCACAAGACACTTTAGAATGTAAAGTACTTTGAATAAATGCACAAAATACCATTTATATGGTTTTTGTTTTAAATTGTACATAAGGACCCTAAAACCCTGTCTTACACATGCCTATGTAGTCTGTTAGTACATATCCCTTCTCTTATCACATAAGCAATCAGCGAAAATGTGAGGTGTGTTTTAAGGGTGTTCTCATCCCAGTCCAACCTGTTAGGGGAAATTTTAAACTTCTCATACATGACCCATTCCAACAGGTAGGCTTCCCTTTCCCCTTGTATATGAGCTCTTGTAACTAATGAGTTAGGTGAAATTCAACTTTCATTTGAGTTATTTGTTTCTTTGTTTACCTATTCCTCCCTTCTCAATCCTTTTTCCCTTTCATGTATTACAAATATGATTGTCCATGGGAGTGTATTTAATCATTTCTAATAATTATTGATAACACCACTTCAGCATTTTTTTTGTGTGTTATGATTATTAATTGGCAAGAAATTTTCCGTATTTGCATGCTATATTGCAGTTTTATAAGTTTTATGTGCCTTCTCTTTTACAGGTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTGGTAAGCATGCAAGTCAACCTTAGCATCAGTTATCTTGGTTTGATGGATAGTGACTTAGGCTTTCTGTAGGTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAGGTAGGTATCCAGTAGTCCCCTCATCACTAATGATTGCTTTTCTGTAAGTCCACTGTTAAAAAAAGATGTGGCAGACGTATTGCTAAAATCTTTGGATGGGTGAAATTCCATGGAGGTGTTCCACTCTCCTCTTGAGGTTTGCTGCTACTTGCTAGCAATAACACCTCACCTCTTAAAATACGTGTATGGAGTTTCTCTTTCTTTTGTGGGTTTCACTCTCTGGCCCACCTATGTTGGATATGAGAGAAGCAAGGACGATACGATTGAAGTTTGTCGTATATTTGATATTGCATTTGGCAATACTGTATTATCATATAGGAGATTGCCCTTATCTATCTGATCTTGATTGCAATTAGAACTTCAAAATTTCCTAGTTTATTACTGCTGCACAAGGTAAAATCTATTTTCTTCTTAAAGAAAAAGAGTGGGTGAAGTAAGCAGCTTCTTATTCAATTCTATTTATTTTGCTTGCTATGCTATTCTGAATAGGTCCGATACAACAGTGTTACTTATATGTTACAAAGTCATAATTAATGTGAATATGAGATCAAAACCTTGACACCCAACTTATGACTTGACTCGTTTGATTTTCCTGTAAAATTTGACTTGTCCCACTGTTTTAACTATGTACTATGATTGGGGTTCGAAGGAGTTTTAAGACTCTCAAACGTTTCATATATCTACCGAGTTACATCTTTTGCTCTCATTCCATCATGAATCAGTGTGGTGAATCGCTGGATTTAACACTCAGCATGAAGCCACATCATGATTGGCTTCTTCTGCGAATAGGTATGATTTAAGAGGCTCATATCTAATCGTGAATCTATATGACACAGGTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</genome_strand>
        <mrna_strand>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTCACTGTTG.....................................................................GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGAGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCGGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTGACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCAAAAAAAAAAGCATTTATGTTTAGCAATG-CCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335785" ref_strand="+" ref_description="SGN-U335785        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | bacterial transferase hexapeptide repeat-containing protein, contains Pfam profile PF00132: Bacterial transferase hexapeptide (four repeats) | chr1:6774754-6777438 FORWARD | Aliases: None(evalue: 1e-05, score=47.8) genbank/nr: LacOPZ-alpha(evalue: 1e-18, score=97.4)">
      <seq>ctgaagaattactgagaaacaaggggcaaaagccctaactacaaagcagtgacgtaccgatgctatccaataagtttgatattatttggaaggataacagtcaatatccatgactattctccatacagatgctcacggggtaaaataaatctctggaaagcaaaaaaagagagagttgcatgggcactgatctcattggacgatgctcttagcagctttttcggggaggatattatcaggaagtacaagctttttttttgtttcacggacaacaccaatcatagaatcatattcctcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="10638" stop="11539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10938" g_stop="11239" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-U335785" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U335785" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10938" e_stop="11239"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAAAGAGAGAGTTGCTTGGGCACTGATCTCATTGGGCGATGCTCTTAGCAGCTTTTTCGGGGAGGATATTATCAGGAAGTACAAGCTCGGGAGGTGTTTCACGGACAACACCAATCATAGAATCATATTCCTCATCAC</genome_strand>
        <mrna_strand>CTGAAGAATTACTGAGAAACAAGGGGCAAAAGCCCTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGATAACAGTCAATATCCATGACTATTCTCCATACAGATGCTCACGGGGTAAAATAAATCTCTGGAAAGCAAAAAAAGAGAGAGTTGCATGGGCACTGATCTCATTGGACGATGCTCTTAGCAGCTTTTTCGGGGAGGATATTATCAGGAAGTACAAGCTTTTTTTTTGTTTCACGGACAACACCAATCATAGAATCATATTCCTCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331953" ref_strand="+" ref_description="SGN-U331953        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | CBS domain-containing protein, contains Pfam profile PF00571: CBS domain | chr5:3428892-3430471 REVERSE | Aliases: T30N20.130, T30N20_130(evalue: 4e-17, score=53.5) genbank/nr: gi|34913008|ref|NP_917851.1| P0663E10.18 [Oryza sativa (japonica cultivar-group)] gi|20161820|dbj|BAB90735.1| P0663E10.18 [Oryza sativa (japonica cultivar-group)](evalue: 3e-20, score=75.9)">
      <seq>ttggctaatatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaatcaatgattcacacgatattaactcaattttttaaggggagagttcatcaaggtagcttgctacttgggctctcgtgtgtcgcctatgcgttgcactactgcatgggcctggcacaccccaccaaatctacttcaaatcttttggttgatatattgtgtaatgtaatctaattcaaatctttcggttgatatattgtgtaatgtgttcttattatgtttatacatacttatatttatttatttaattttatataattttaaatgtcgtgtatgggcataagctaagttagatttacagcgaaatataattttggttaaaattgaacactgtttttagatcttgtttgacaatttgaaagttaacaatgagtattgttgtggctttgctaatattgtttttcagtagtaatctcctttgatgaattgattgagttgcttcacttctccagtttgttgatccaccactgctttgacaatatccgccacagaaatcatgcctactaccttcccatcgatcactggaacatgtcgtatgtggtgctctgtgatcataaaacgttccatcacatttccatagtgcattaagcatcagtaacttcgcgagttagaactaatacttaccactcatgagctgcattgcttgaagaatgtttgtgtccgatgtgacggttatcagcttgctctgttgcaatggtagtactaatatttgagcacaaaacagaagacagatgaaaaaaagataaagccaggaagaccgatatctatagagtacctgctcggtcataatatctccgactcttgtgtatttagatgatctatcctgtacaattacctttcgcaaataatctgtacgtctcttgtacaatgtgcatagatgaataagttcaacattgtgtgtattactaaagatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="25029" stop="23454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24729" g_stop="23753" g_length="977"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="977" r_length="977" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-U331953" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>977</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331953" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24729" e_stop="23753"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</genome_strand>
        <mrna_strand>TTGGCTAATATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345590" ref_strand="+" ref_description="SGN-U345590        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cccatcctcctttcattacttcaatttcacacccacccacataacattagacatagggttagggtttctttttttttttttttaaattaacaaaaaaaaaaaaatcatggcattaggtggtggtaatgaggaaaaagagatgagaatttcaggttttcaaaatatagatcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="36241" stop="37013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36541" g_stop="36713" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-U345590" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>173</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36541" e_stop="36713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCCTCCTTTCATTTCTTCAATTTCACACCCCCCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</genome_strand>
        <mrna_strand>CCCATCCTCCTTTCATTACTTCAATTTCACACCCACCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330701" ref_strand="+" ref_description="SGN-U330701        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger homeobox family protein / ZF-HD homeobox family protein | chr1:4938873-4940690 REVERSE | Aliases: None(evalue: 4e-08, score=53.1) genbank/nr: transcription(evalue: 4e-06, score=53.1)">
      <seq>atgctgaagtacaaagattttgctcacaagttggagtcaagagacaggtttttaaggtttggatgcataataataagaacccttcttctgctaaaaaaaatataatacaagaagatcaaccttaattaattttgtttaattaaggttttgagggaaaaaatgaaattaaatttcttgggatttggtttatgcttatgtaatcttactaggaatcgtacgtagctagttttttttgttttttttttgggggggtctatgtagtattattgtaactatatggaaccacttaattagatttttatttttattaattgttgtactttggaacctttattcatctgaaaattttcagctaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="37873" stop="38827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38173" g_stop="38526" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="354" r_length="354" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="355" polyA_stop="381"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-U330701" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38173" e_stop="38526"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</genome_strand>
        <mrna_strand>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327997" ref_strand="+" ref_description="SGN-U327997        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT1G20480.1 | Symbol: None | 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein, similar to SP:Q9S725 from Arabidopsis thaliana and SP:P17814 from Oryza sativa; contains Pfam AMP-binding enzyme domain PF00501 | chr1:7094250-7097104 REVERSE | Aliases: F5M15.29, F5M15_29 (evalue: 7e-05, score=43.9) genbank/nr: unknown(evalue: 5e-65, score=249)">
      <seq>tttcaggggcaacgtgtgtgttgacatccccgagtacatttgtcaatcgtcctaggatttggcttgaattgatatcagagttcaaggcaacttgcactcctgttccttcatttgctttgcctctcgtgttgaaacgtggtcatactgaggcaacggttacaggaactgttagcaatcctattagtatgttgagcttgatgaatttgatcatcgttaacgagccaatttacaatgattctatcgaagaatttgttgaagtttttaggccttttgggctaaatcctttggcaatttctccttcatatggcttagctgagaatggcacatttgtttcaacatcatggagaagtagtaagtttaacaaattttcgacgtataaaaagctcttgccaagtgctaggcttgatgaagaccaagtagacattgaaattcttgttgtgaatgaagatacaaatgagattgttgaagatggaattgaaggtgaaatatggatttcatctcctagcaatgctattggatatttagcacatccctctctaactcaacaagtgttcaacgccacgcttaanaacaaggcgggaaaatgctatgttcaaacaggggataaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="41731" stop="40524"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41431" g_stop="40824" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-U327997" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U327997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41431" e_stop="40824"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</genome_strand>
        <mrna_strand>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAANAACAAGGCGGGAAAATGCTATGTTCAAACAGGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341421" ref_strand="+" ref_description="SGN-U341421        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: beta-galactosidase(evalue: 3e-30, score=135)">
      <seq>ttctaatgttagtttacagcagcagatattgtcaatgcagcagcagcaacaacaacaacatcagcagttcttggatcctattaatgggattcttaatgttgggagctaagtgatttaagggtctaaggatgcgaacaaccaagctaaataatttaaggggctaaggatgcaaaccaagcttaagtatgaatctggtggaatttaagagcttgctaattggaaaagagcgggtccaatgaagacacactaagttatgcctttcatattctcaacatgtactgcacacgtttattccatctacgtttatattaaaattttgtgtatacacattcttgaaataaaggttgaaaaatgaaacataaaagtattgaagtgaaaatctttcttatttggttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="45808" stop="43478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45508" g_stop="45407" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45406" i_stop="44073" i_length="1334">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.888" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44072" g_stop="43779" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="396" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="397" polyA_stop="406"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-U341421" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45508" e_stop="45407"/>
          <exon e_start="44072" e_stop="43779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGGGTATGTTTCTCTTTCGTGTCTAGTTTACCATTAATCGTTCAGTAATTGTCATGTATCTTTCCAGAGTTTTTCCATGTATGTTCATTGCATTTTCAATAGTATGTAATGATGGTTATCGGTAGGGGAAAGTTAGTCGATTACTCTCAGGTAAAACATGTCATGCAATAGTTTAGTTACAGAGTGGTTCGGTTAACCTCAATGTAGTAATACTTCGTTAGTGAAAAGCCTGAAAATGAAAAGAAAAGAAAAAAGTAAGGAAAGCAGTTGCTCTTCATCTAAATATCCTGAATATGATTGTCCTATCTTCAAAAACTCTTGAGTTTGTCTTTTTCCAAACTGTCCGCCATTTGCAAGCAGGAACCAATCTCCACGCTTTCTTGTCTAACTCTACCTCCCAAACTGTTCTAGCTCTTAGGAAGATCCACAGTGCTTGCAGGAACCACTCTCGATTATTTGATCCCCACCAAATTAAGAAAGAGCTGTCACAATTGATAAGTAAAAGAACAATGAAGAAACAAATGGCTATTAGTTTCTGTGTTAGACTCAGAGAACAAACATATGGAACATAACTGGAATCCTCTTCTTCTCAACCTTTCTTGAGTCAAAGCTGCCTTTCTAGATACCAACCAGGTGAAAAACAGAACCTTTGGACTTTGGAGGGGCATTATAAAATTATATGGCCAATCAATATTCTGATAAGCTTAATTTGTGATTGCTAAATTGGCAAACATGACTGTGAAAGTCCCATCTTTGCTTGGATTCCAATAGAATTTGTCCGCTGCTTCTGATAGCCCCTAAAGCTCCTCCAAAGTTTTAAAGAACTCTACTGCTCCTTTAATGATATCTGATGGATCTTCACATCCCTACTCCATCAGGACTGTTAACAGGATCTGTGTACCAAATCCCTTCCTGACTATTTGTCAAGAATTACCCTTCTCCATTAACTGTCCTCTTCCTTAGTTTACCTCCATATCCATTTCATCCGTCGACATGTATTTTGAACATTTATGTCCTTAATTACCAGACCCCTTTTTCAATTTCAAAACTTCCTCCAAACTAGTTCAGGGCTGAGCTTTGTCAAACCTTTTCTGGTTTAAGGTGCTAGTTTGTAATATTATATTACCATGTCAACCAAAAAAGAAAAAGAGGTGCTACTTACTCTAATCCCTTTGAGCTAAATAACTTTGCCATGACTTTCAGTGACTCCAATATCATGCCTATAATTATGGAAGTATTAACTATGTTCTTAATTCTAATGAGCAAGTAAGCATTTCTTTTCCCAATGAAGTTGTAATGCAAAAGTAAACACCATTGATTGAATTTCCCATATTCAGGAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</genome_strand>
        <mrna_strand>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330810" ref_strand="+" ref_description="SGN-U330810        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G75220.1 | Symbol: None | integral membrane protein, putative, strong similarity to integral membrane protein GI:1209756 from (Beta vulgaris); contains Pfam profile PF00083: major facilitator superfamily protein | chr1:28232851-28236492 REVERSE | Aliases: F22H5.6, F22H5_6 (evalue: 0, score=704) genbank/nr: gi|15222158|ref|NP_177658.1| integral membrane protein, putative [Arabidopsis thaliana] gi|25308944|pir||E96782 hypothetical protein F22H5.6 [imported] - Arabidopsis thaliana gi|10092276|gb|AAG12689.1| integral membrane protein, putative; 33518-36712 [Arabidopsis thaliana] gi|15724240|gb|AAL06513.1| At1g75220/F22H5_6 [Arabidopsis thaliana] gi|21700861|gb|AAM70554.1| At1g75220/F22H5_6 [Arabidopsis thaliana](evalue: 0, score=704)">
      <seq>ggctaattccagtattttcaacaacttcatttttcttgatctgtagttcaaatttcaagaactatagagaaaaggggttgactcaaaatttgaagaaaaaaaaatgagtttcagagaagagaacaatgaaggggatctgaaaaagccatttttacatactgggagttggtatcgtatggggtcaagacagtctagtatgatgggttcttctcaagctattcgtgatagttctatttctgttcttgcttgtgttctcatagttgctttgggcccaatccagtttggtttcacttgtggctacacttcaccaacgcaaattgcaattaccaaagatctgaagctcactgtttctgagttctctttgttcggttctttatccaatgtgggtgctatggttggtgcaatatctagtggtcaaatttctgagtacattgggcgaaaagggtctttaatgatagctgctataccaaatatcattggttggcttgccatctcatttgccaaagatccttcttttctatacatgggaagattgttggagggctttggtgtgggaataatctcttatgtggttcctgtatatattgctgagattgcacctcagaatatgagagggggtctagggtctgttaaccagctctctgttacaattgggatcatgttgtcctatttactgggactttttgttaattggaggctgcttgctgttcttggagcattaccttgcctagcactgatacctggactatttttcatccccgaatctcctcggtggttggccaaaatgggtttaacagaagattttgaaacttcgttgcaagttcttcgaggctttgaggctgatattaccaatgaagtaaatgaaattaagaggtctgtagcatcatcaacaaaccgaagaacagcaatgcgttttgcggatctcaaacatagaagatattggtttcctctcatggtaggaattggactacttatcctgcaacagttaggaggaatcaacggtgttatattctattccagcaacattttcctatctgccggtatttcgtcaagtaatgctgcaacttttggtgtcggtgctatacaggttgttgcaactgcagtttctacatggctggtggacagaactggacgtagaattttattaattgtttcctcggctggaatggctgttagtcttcttattgtctccgttgccttctatctaaagggttatgtatctgaggattctaccctctatggtgtcttgggaatagtgtccgtagttggggtggtgttcatgattatttcattctcgctcggaatgggaccaattccatggcttataatgtctgagattcttccaatcaagatcaaaggtctcgctggaagtacggcaacattagccaactggttattctcgtgggtaataacagtgactgcaccgttgcttatggcttggagcagtggaggaaccttcactatttacatggttatgtgtgctttcaccgtggcgttcgtggcaatttgggtaccggagacgaaagggagaactctagaggaaattcagttttctttcagatgaaaacttaccccctcccaaacaggcctttgtgatcctttgttctttttgtcacaaaactcaatttcccttgtgcaaaagtttcaatttttcacatatatagggaagaatgagttgcacatgctgcttcagagtgtgtacatttcatcttgatcttgccatttgctgtaatttactgtatgattttattatttttgtatattctaagtgtgattataccattcaatttaaaataaagtgctaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="53183" stop="59599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53482" g_stop="53773" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53774" i_stop="54760" i_length="987">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54761" g_stop="54823" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="355" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54824" i_stop="54902" i_length="79">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54903" g_stop="54992" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="445" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54993" i_stop="55093" i_length="101">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55094" g_stop="55153" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55154" i_stop="55256" i_length="103">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.825" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="55257" g_stop="55322" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="571" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="55323" i_stop="55422" i_length="100">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55423" g_stop="55488" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="637" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55489" i_stop="55580" i_length="92">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55581" g_stop="55656" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="713" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="55657" i_stop="56329" i_length="673">
            <donor d_prob="0.739" d_score="1.00"/>
            <acceptor a_prob="0.961" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="56330" g_stop="56394" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="714" r_stop="778" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="56395" i_stop="56483" i_length="89">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.784" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="56484" g_stop="56576" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="779" r_stop="871" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="56577" i_stop="56684" i_length="108">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="56685" g_stop="56768" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="872" r_stop="955" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="56769" i_stop="56854" i_length="86">
            <donor d_prob="0.025" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="56855" g_stop="56939" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="956" r_stop="1040" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="56940" i_stop="57531" i_length="592">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="57532" g_stop="57578" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1087" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="57579" i_stop="57728" i_length="150">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="57729" g_stop="57791" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1088" r_stop="1150" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="57792" i_stop="57872" i_length="81">
            <donor d_prob="0.722" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="57873" g_stop="57932" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1210" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95">
            <donor d_prob="0.512" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="58028" g_stop="58093" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1211" r_stop="1276" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="15">
          <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.506" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="16">
          <gDNA_exon_boundary g_start="58188" g_stop="58247" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1277" r_stop="1336" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="16">
          <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="17">
          <gDNA_exon_boundary g_start="58543" g_stop="58657" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1337" r_stop="1451" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="17">
          <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.511" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="18">
          <gDNA_exon_boundary g_start="58937" g_stop="59290" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="1452" r_stop="1805" r_length="354" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1806" polyA_stop="1825"/>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-U330810" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1805</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U330810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53482" e_stop="53773"/>
          <exon e_start="54761" e_stop="54823"/>
          <exon e_start="54903" e_stop="54992"/>
          <exon e_start="55094" e_stop="55153"/>
          <exon e_start="55257" e_stop="55322"/>
          <exon e_start="55423" e_stop="55488"/>
          <exon e_start="55581" e_stop="55656"/>
          <exon e_start="56330" e_stop="56394"/>
          <exon e_start="56484" e_stop="56576"/>
          <exon e_start="56685" e_stop="56768"/>
          <exon e_start="56855" e_stop="56939"/>
          <exon e_start="57532" e_stop="57578"/>
          <exon e_start="57729" e_stop="57791"/>
          <exon e_start="57873" e_stop="57932"/>
          <exon e_start="58028" e_stop="58093"/>
          <exon e_start="58188" e_stop="58247"/>
          <exon e_start="58543" e_stop="58657"/>
          <exon e_start="58937" e_stop="59290"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACTGTAATTTCTCATTTCTCATTCAACTTCTTTACTTTGCTTTGTTTTTATGTATATGTATGTTTATCTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGAGAGTTTTTTGGGATAAAAATGGAGTCTTTAGCTTGTTTTGTTGTGGTAAAGGATTCATAATTGGGGTTGATGAGGTGATAACCAATTCAATATTGATCACATGTCTGTTTATTTGCACAATATCATGTTAGAATGTTCAAGTTTGATGAGAAAAGATAAAGTTTTTTGAAAAAAAATGAAGTCTTAAGCCTCCTTTGATATGATGAATGATTCATAATTGGGGTTGATGAGGTGGTAAACAATTCAATATTGACCATATGTATGTTTACCTGCCTATTATCCTGTTAGAAGCTTCAAGTTTGATGAGAAAAGATAGTTTTTTGGAATAAAAATGAAGTCTTTAGTCTCTTTTGTTGTTGTAAAGGATTCACAGTTGGGGTAAGAGGTTGCATATATTGTTGGGATTTACAATATGTTATGCCATTCAGATTTTTCTGGTGGATGACGTAACAATTCAATATTGACTACATGTTTGTTTACCTTTCCAATAACCTATGAGAAATTTCAAGAGTTGATTTCTCATATGGTCAATCAATAGAAAGTCATTTGTTTTATTGAAAAAAATTGTGAATCAAGAAGAGAAGGACTTATTGAGATTATAACTATTGTTGAGTGACCATATGAGAATTTACATGAAACTTCATATTTGATTGAAGAGGATAAGTTTGAATAAAAATAGGCTTAAGCTTCTTCATTTTTGTGGTTAAGGGATCAAAAGTGGTATTAAAAAAATGTAGCATCTTTATTCAGATTACAGTTTGTCATGTCATTCTTATTGTGCCTGCAGTTTATTGGCTGCTTACACGATTTATGTTGCTGCAACAAATATTTGCATATATATCTCTATTGATCAGGTGTTTGTTTTTGTTGCATTTGAAGTGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAGGTCTGCAAGAGTCATTCTTGATTTATATCTAATTTAAGTTTGTTTCAGAGCCATTGTTGACTAAAGATAATCTTTTCAGTTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGGGTAAGATTATTGCATTAAAAATGATGTCTAGTTTTTTCATTTACCATATTTCTGTGTATTGCTGAAGTGGATGCTCAAATCCTTTTTTTTTCCTACTGCAGTCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAAGTAAGATATTCTACCTGAAGTATATTATATGGTGCCTCGATAATCTACATTGACATGTATGTGCTTATATCTCCCTTCCTTTGGCCTTACCAATATGTTTCAGGATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTGGTAATGTTCAATTTCTTAAATCTTCTCTGGTTACAGTGATTGACTACACCGAAATTCTCAAAACTAAATGCTTTCGCTTCCTGCTTTTTGGTGTTTTTAGGTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAGGTTCGCGGAGTTATAGACTTATTTTTCGTTAAAACCAAAGTTTGCTATGCCTGCTTAATCAATCACATGCTATCATTTGTTTCTTAATGTAGCTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTGGTAATGATCATTTCTCTTGAAAACTCTTGTTAAGCTACAATTTACAGTTATGAAGTCATAAATCATTTTTTACTCTACTGAATAACATTTAGTGCATAAATAATAAACTAGTCAATTAAGTTGAAGTGATAGCTTTTCATTTTGTGAGGACTGAGAATAGTTATTGAGTTCTTCTTTGGCTGATATCTGCACAGCTTCTCTTTATTCTTGTAGATTTACGTTGTCAAGCGTAAGCGCTTTCCTGCTCCCTGACTTAAGACTTGTGTTTTGTTAGTTGAGCAGTATTTCTGTTTTAAAATGACATTCCTTTTCTTCTTAATGACGGTGTTGGTGGGGGCAGTTTGGGTACCTACTGCCTCCCACCAACACATGTAACGTATAACTTTTCCAACCAAGGCTTAGGAGATGGGACGTAACGACATCGAGTTTCTTTTGCCTCTGTTGGGATTGAACCTGAGACCTCATGGTTCTTCTCCTACTTCATTGACCACTAGTCCACATCACTGTGCTTCCAAAATGACAGTCTTCATTCGCATAATTTTATAAAAAAAATATTTTTCCTTTTGTGCTTTTGGTGGAGAGGGCTATGTGTCTTCTTCTTCTTCTTCTTACACTTACATAAGAGTTTCCGGATTGAATTTTGAAAGAGCTGGTATATTATTTTCTTTTATAGGAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTGGTGAGCTTCATTATATATATATTTCTTTGTGTAATTCTTCAAGGCTTTGATTGCTGTTTGTCTCAGTTGAGTTTCTATCATAAATATAGGCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAGGTAAATTGTATGAAAGACTATATAAAGCAAGCCTTGTTGCCACACATGAAATTCGGTATAAAACTTGTTGTTAAATTTGTATTTATTTTATGTTATTTTTGCGTATAGAGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATGGTATTTTGACGTTTCATGCTGTTATTGGAGCCTTCGTGTTAGTTATGCCCTTGTTTCGTCAATCTTCTAATTTTTCATTCTTTTAGGTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCGGTACGGATTAAACAAACAGTTGCAACTTGTCATCTTAAATGATGGATGTGTCAGTAGCATTTGCCTTCTTCAAAAGAAGTGTCATTTTCAGCCTGTCATGTAGCATCTACCTTTTTGTTATGATCCATTGCTGGCAAAATTGAATTGCATTATAATTTTGCCTCAAGAGAACCCCTGAAACAAACTAATTGATTAAGATTGATACACGAGTTATTTAAATGGCATAATACATAAACAAACACTCAAATATGGCCCCAACTGGCAAGTACGCACTCCAACTTTGAGAGTATACATCTAGACACCTCACCTGGCATCTAAACACTCCAACTTGTCCTCATTGTCTGGTGGACACCTGACACTAATGTCGCACATAAAGTTAGAAGTGTCTAGATTGTACGTTTGAGTTCAACTGACATGGCGGAGACGAGTTGAGATGTCTAGATGTGGATACTCAAAGTTGGAGTGTTTAGTTGTTAGTTTAGACCAAGTTAAAGTGTCTATCTATGTATTATGTCTATTTAAATCTATAATGATCTATGACTTTCTTCGTGTAATATAAGTCTTCACTAATTTAGTCATCTAAACTTCACAGGTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAGGTCCAGCTTTTGCTATTTTAGTTTCTCTTCTTTAACTTTCAAGTATGCATATTATTTAGGATGGAAGGTGAAAAGGTTTCGATTTCTGTGTAGCACTTGCTTGCATTACTTTTGTGCTGTCAAATTTCATCAATGTCCTTCAATGTGCAGGTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATTGTAAGTTTTAAAAAGTCATGACGTATATGTAGATTGTTCTAATTTTTGTGCTAACTTATTAAAGCAAATGCTCTTTTGTAGGTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAGGTAGTTTAGTGGAACAAGTTGCTTTCGTACGAAAGATTCCGACTTGAACTGCACTTGTCATCTTTCTCATCATTTCTTCTTTTATATTTGATCAGGGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTGGTATGTACCCTTCTCGATGAAGACATCTTCGTCTCTTGAAAATACATGATTAAAGTAACAGATACTCATTTTTCTGACCAACTTCTCATTTCAGTTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAGGTACTTACTTTTTCATTTATCATGCATGCCAAATTTCTGCTTGCTGTTGAGTTCTCTTCGTACCTACTTTTAACAATTTCCGAGCAATTGGAGTTGGTCCAATTATCGGATACTGTTCGACCTTTAATCGGTTCGGTGATTGATTAGTGTCCAAGATCCCTTTCGTGAATATAGACATGCTACATGTTTCATTTATCTGGAACGATACGGGCAACTGATGATTAAGTTTTCGTGCTTGCTTTACGTTTCATGTTAAGATTTTCTTTGAACTTATTACGTGCATTGGATATTGTAGATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAGGTATCTTTCTCTCATACTTACACACCACATGTATAGACATTTTGTTCCCCATAGCATAAGATTCCCGCACTATGTGCATCAGTGGCGTAACCAGAATTTCCACTGAGAGTCAAAATATAAAGAAGTAAAACACGAAAAAGCCAAGGGGCTTCGTCTATTGACACCCCTCAGACAAAAAGATGTACAAACCATAAACATGTTCTGCTGAAAAGTTTCGACATTTCAAACGTGTAGCTTCTAAGACCTGAACTGACTTAACATCTGCACATTTTTCACCAGGAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAA</genome_strand>
        <mrna_strand>GGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG...............................................................................TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG.....................................................................................................TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA.......................................................................................................GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG....................................................................................................GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG............................................................................................CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG.........................................................................................GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG............................................................................................................AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG......................................................................................GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG......................................................................................................................................................GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT.................................................................................GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG...............................................................................................GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG..............................................................................................TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG.......................................................................................................................................................................................................................................................................................................ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG.......................................................................................................................................................................................................................................................................................GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320020" ref_strand="+" ref_description="SGN-U320020        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | very-long-chain fatty acid condensing enzyme, putative, similar to GB:AAD37122 from (Arabidopsis thaliana) | chr1:6728975-6730922 FORWARD | Aliases: F18O14.21, F18O14_21(evalue: 0, score=897) genbank/nr: gi|15223556|ref|NP_173376.1| very-long-chain fatty acid condensing enzyme (CUT1), putative [Arabidopsis thaliana] gi|25402889|pir||F86327 protein F18O14.21 [imported] - Arabidopsis thaliana gi|8778420|gb|AAF79428.1| F18O14.21 [Arabidopsis thaliana](evalue: 0, score=897)">
      <seq>ggctgcaggaattcggcacgacgcttcagtggtagtatagtagagagaagaagaagaagagtgagagaggttttagagcctttcaaactctttgatttccccaatttattctctctctttttcaccgccgccatgaacggagccaccggcacgcaagtcaacaccgcggacggcggtggtggtgagccagtcggagttcagatccagcagagtaggaggttgccggatttccttcagagtgtaaacttaaagtacgttaaactaggttaccattacttgatctctcatttgttgactctatgtttgattcctgtaatggctgtgattttaattgaagcttcacaaatgaatcctgatgatattcgtcaattatggttacatttgcagtataatctagtttctgttattatttgttccgccgttttggtttttggatccacagtttacatcatgactcggccgaggccggtttatttgattgattactcttgttataaagctcctgagcatctcaaggctccctatgaacggttcatgcagcattcacggctcacaggtgattttgatgagtcgtcgcttgagtttcagaggaagattctggagcgttctggcctcggggacgaaacttatgttcctgaggctatgcatcagcttcctccgcagccttctatgcaggctgcgagggaagaagctgagcaagttatgtttggtgccttggataaattgtttgctaatacctctgtgaaacctaagaaaataggtgtgcttgttgtgaattgtagtttgttcaatccgactccatcgctttcagctatgattgtgaacaagtataagttgagaggtaatataaggagttttaatctgggaggtatgggttgtagtgctggtgtaattgccgttgatcttgctaaggacatgttgcaagtgcacagaaatacctatgctgttgttgttagtactgagaatattacgcagaactggtattttgggaataagaagtccatgttgataccaaattgtttgtttagagtcggaggttctgctgttctgctgtctaacaagtccgtggatagaagaagggcgaaatataagcttgttcatgttgttaggacacatcgtggggctgatgataaggcatttcgttgtgtttaccaagaacaggatgatgctgggaaaactggggtttctttgtcaaaagatctcatggcaatcgctggtggagcgcttaagacgaatatcactacattgggtcctcttgttctacccatcagtgagcagcttctgttctttggttctctgataattaagaaaatattcaataagcatatcaagccttacattccagatttcaagttggcctttgatcatttctgcatacacgctggtggaagggctgttattgacgagctggaaaagaatttacagctgacacaggttcacgttgaggcatctcgaatgaccctgcaccgctttggaaatacttcatccagctctatctggtatgaattggcgtatatagaggccaaaggaagaatgaagaaaggtaacaaagtttggcagattgcatttggaagtggctttaaatgtaatagtgctgtttggcaggcactacgaaatgtaaagccttctcccgatggtccctgggaggattgtatcgacaggtatcctgtaaaagtagtgtcataacactgtggagatcatgattaggcaagttaagggctatctgtagctgcttccgtgtacgtcatggcacctcttctcttgaagccgagtgatgctctacttctgttcacgagtcaagtatcattttgtccttttcttagtttagagccttatgctaatttgtgttgtaccatttcaatctattacttgtatgacttcatatatgtagcaattcctattttattgtagttattttcctgataaacatctattcatgactgagcttatgagtagtggattcaagttgctaacacgcactgttatttctcactgttagtgaaatgattccattaatggcatgttcatcttgggttcaagtaaggttttctttaaaactcgagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="63640" stop="61025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63333" g_stop="61339" g_length="1995"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="2018" r_length="1995" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-U320020" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1995</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63333" e_stop="61339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATG</genome_strand>
        <mrna_strand>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGGACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGTTACATTTGCAGTATAATCTAGTTTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332756" ref_strand="+" ref_description="SGN-U332756        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cccaccccaacccctatccccatacaccagtggttatcttcttccccatcattctaatgatttcaaaattcttagtatcagtggttatcttcttcccccaccattctaatggtttcaaaattcttagcattttgtttcatttataaatttttcgaagagattcttttccccatctttctctacctaaaaaacgagatgaagtaaaaagttataattaataaaagctgatgaaaaaaaaatttgtagggttaaagatagaactgtacagggagggggggtcgccattaatggagttaaagaaaatgtatgttttgttccagttgaaggcagggaggtgtttaggttttactttttttttaaattttttttactttaaaataatttttattttttttactttataatataatgtttaaataattttttggattaaaaaataacacatgtcattatttgattggtcaaattgacatgtcagcgcgagtgtatttcacacattctctattttttgtttattctcgaaaaaatgttcaaatgattcaaattcagaatggttgaagtgttcaataggtagtacgtctagttgaggtgtctaaatgaataatcgggacaagtttgagtggccgcatatgactttggcctattttattctaccgttggttacgaatatttattagtatatataggaatccaccattaanggaatatatatatatatatatatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69521" stop="64833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69221" g_stop="68567" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68566" i_stop="67338" i_length="1229">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67337" g_stop="67333" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="648" r_length="5" r_score="0.800"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-U332756" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69221" e_stop="68567"/>
          <exon e_start="67337" e_stop="67333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGAT--AACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTT-TTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTACAAATAAACATTTAAATTTATAAACTTAAGTAAATTAATACATATATCTTATGTACTAATATTTTATGTGGCAATTTGTGTTTTATGTAAAGTAGAATATAAATATATGTATGTTTAATTTAATACAAATTTGACTAATTACTTCTACATGTAAAAAATTGAAAAGAAGCACATGCAAAGAATTTTGAATTGAATTATCGAGATTAATCTTGAAATTACAATACAAATATGAAAGTTGGATTTGTTAAAAGAACAATTTCGAAAATCGTACATGTAAAAAATTATAAAAAAAAGTATATACAAATCAATGAATTTTGAATTAAATTATTGCGACTAATTTTGAAATCACAATATAAACATGAAAGTTTGATTTGTTAAAAAAACGATTTGAAAATCATGATTTAAATTTGGATGTATAATATAATTTCCAGACTTAATTTGATGAATTAATAATCAAAGATTACAGTATTGATACTGCAACGGATTATAACAAGAAAATTAATTATTGCGAAGCATATGTTTTTTTTTTGGTTGTAATTACAAGCACATGATTTGTTGCCTAAGTACATCTTTTATTGCCAAAATAATAATAATAATAATCCACATTAAGCAAACAAATTTAAACAACTTTATTTGTATGCTTATTTAAATTTTATGTAATTCTAATTTTACCTGTTGTTAATTTTCTTAAATACTAATTATTAGAATTGTCAAAAAGGGTCGGTTCAGTCTCGCTCGGTTCAAGCCTCGCAAGCAAAGAAATTTGAAGGGCAAGGGCGGATCAGCCCTTCATTTGAGGGTCTGAAAATACTCAATCACTATAAGGATTGAAGGGTGGAGCGGACTAGTTCTTTTGTTTTCTTTTCAAACTTAAAAAAATATATCATCAAGAAAATGAGAAGATTTTCAAGTCACATATGAAAAATAATGGTGTTGTTTCAATAACACTAGTAAAATGTCAAGTAAAGAACTGTTACAGGTAATGTAATTAGCATGCATTCGGGATACAAGATATGCGAGATATAATGTATCTCGCGCATCAGATTAGTGTATCATGCATAAAAATAATATATCTTACTTAACTATTAATGTATCTCGTGCATCAGATTAATGTATACATATATTATTGTATCAATTGAGGAATTTCTATAATTATAAATTTATAAGGCACAAATAACAAATTTACCTTAATATATGTGATTTCTGTCATTTACCCTTTAAATGAATAGTTTTG</genome_strand>
        <mrna_strand>CCCACCCCAACCCCTATCCCCATACACCAGTGGTTATCTTCTT-CCCCATCATTCTAATGATTTCAAAATTCTTAGTATCAGTGGTTATCTTCTTCCCCCACCATTCTAATGGTTTCAAAATTCTTAGCA-TTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTACCTAAAAAACGAGATGAAGTAAAAAGTTATAATTAAT--AAAAGCTGATG-AAAAAAAAATTTGTAGGGTTAAAGATAGAACTGTACAGGG-AGGGGGGGTCGCCATTAATGGAGTTAAAGAAAATGTATGTTTTGTTCCAGTTGAAGGCAGGG-A---GGTGTTTAGG-TTTT-ACT-T-TTTTTTT-AAATTTTTTTTACTTTAAAATAATTTTTATTTTTTTTACTTTATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGATTCAAATTCAGAATGGTTGAAGTGTTCAATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331707" ref_strand="+" ref_description="SGN-U331707        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | Maf family protein, contains Pfam domain PF02545: Maf-like protein | chr5:17169295-17171706 FORWARD | Aliases: MJB21.15, MJB21_15(evalue: 3e-68, score=254) genbank/nr: gi|42568283|ref|NP_199091.2| Maf family protein [Arabidopsis thaliana] (evalue: 3e-66, score=254)">
      <seq>ggcgattggcggccaatcggccgaattggtaagttgtaaaaaccgggtcagggcaattgacccatttcaaatagtaacatttccttgtgtaaaattctctccaatcggactgcggcgttaatccgttcactctccggcgaaaaatggaagccaatgctcctcagtttaagctaattttgggttcatcctctactgctcggaaaaagattttaggcgacatgggatacgagttcacaaccatgtctgcagatattgatgagaaagctatccggaaagaaaagcctgaagatttagttatggctcttgctgaggcaaaggcagaagccatcataccaagggtttcaattggagaatccgaaggggatgccgagccaacacttctaattacgtgtgatcaagtggtggtctatgaaggtgtgatcagggaaaaaccatccagtgaagcagaagcacgtcagttcatgaaagattacgccaatggacatgcagcaaccgtgagttctgttcttgtcacgaacctgacaacaggaagtagaagaggagagtgggacaaagtcgagatttatttccacgacataccagatcaagtcatagataaactgattgaggaagggatagttctttatgcagctggtggcttgataattgaacatcctctcgttttgccttatattaaggaagtggttggctcgactgatagcgtgatgggtctcccaaaagctctcaccgaaagacttataaaggaggttctttagtatgactatgatcctgctgctacctgaatgagttcgcgatctataattttgatatacgctattggagctgaaattatcattgattgttggcactggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="+" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="69187" stop="74380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69494" g_stop="69631" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="170" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.573" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69741" g_stop="69812" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="242" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69813" i_stop="70556" i_length="744">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70557" g_stop="70631" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="317" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="70632" i_stop="71830" i_length="1199">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.738" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="71831" g_stop="71911" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="398" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71912" i_stop="72577" i_length="666">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.625" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72578" g_stop="72647" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="468" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72648" i_stop="72722" i_length="75">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72723" g_stop="72814" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="560" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="72815" i_stop="73516" i_length="702">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73517" g_stop="73558" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="602" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73559" i_stop="73649" i_length="91">
            <donor d_prob="0.959" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="73650" g_stop="73730" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="683" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="73731" i_stop="73908" i_length="178">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.947" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="73909" g_stop="74080" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="855" r_length="172" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="+" ref_id="SGN-U331707" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69494" e_stop="69631"/>
          <exon e_start="69741" e_stop="69812"/>
          <exon e_start="70557" e_stop="70631"/>
          <exon e_start="71831" e_stop="71911"/>
          <exon e_start="72578" e_stop="72647"/>
          <exon e_start="72723" e_stop="72814"/>
          <exon e_start="73517" e_stop="73558"/>
          <exon e_start="73650" e_stop="73730"/>
          <exon e_start="73909" e_stop="74080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAGGTAATTCTTTCAGATTATGAAAGATATTCTTATTGTACTCATAGTGAATCGAATTTACTAATTTCTCAGTTCAATTATTGAAATCCTTTAACTCGTTTTTGTTTTTAAGCTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATGGTAAATATCTAATTACTTATCAATTAGTTGTTGTTCTGTATGCATATATGATTGAATAAGTTCCTGCTCAAAGTCATTCTAATTGATATATGGTTAATAAGTAATAGATTGATTCAGATACTTATTTGTTTGTAGCAATATCGTTAAGTGATAATGAGTTGGTGTCACTGAGCTTAAATCAAATTATGAAGATCCATAATGTATATATACATTGAATAATAAATGTTTGATTTAGTAGATTAAAAATGTAAGAACATGTAAAGATACTAACAAGTAACACATTAAGGAGCTACTCAAACATCACTAATTAGGACATGAAGTTAATCTGAGTTTCGACATTAGCACCCGAACTCAACAGGTTAGGTTTATTATTATAGAATTAATTTCAAAAGCAAGTGTCAGCTTTTGTATGTAGAAGAATAAGAGATGCAAATTTTACAACATAATTCCATCATCGAACTAAAGCAGCAATTGGTTATTATGATATATTATTTGAATCAATGCCAAAAGCGTGACTACCACTGACCATCACCCCCAAGTCTCAAATAGTCGAGAGCAACACATTCTTGGGCCTTTAGGTGCTTGTTGTTGTTATTATTGCTAGGTGCTATAATTCTATATAAACGACACATATCATGTTTGGTGCTTTCACTGAATGTTAGATAAACAGAGATTCATATAGGATCCCCAACTCGATTGAGTTTTATTGGTGGATTAACAGCTTAGCATGTTCTTGTAATATAGTCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAGGTTTGTTTTCTTAAGAACTAGTGCTAGTCCACACATCTCTGAACATATTTTTGAAGTCATTTACTGCTTTGAAATTGCTGGGGGTTTATTCATTTTTCATTTACTGTCATACATGACACCGTTGTGATTTTTTCTTGTTTGTGGCATTCGTTTTTGATTTATGAATCACTCTATGCAATTTGTGATGCTTTTCTTTTAGAGTGTCTTGTAGTGATTTCAACCGTAATCTTAATTTTGGTGTTGATGTTATTTGTAAAATTGCTCTATTACCTATCTTGTTGTGATAGTGTATCTGATTTTTTGGCAAATCATTTAGCTAGCGTGTAGACGTAGATTTGGTTGAAACTTGAATTAAAAAGTTTTTGAACTTGTGTTGAAAAATAAATTTTGGAATGTTAAAGTTGAGTTAGCTTGCATTTTTCTTGAAAAGAGTTGAAGTTTGTGAGTGGAAGAAACTGTTTAGCCAAAAATCTGTCCCCGAATTTGATTTTTTCTTCAAAAACTGATCAAATACCATCAACAAACAAGGGGAAAAAGGGCATCCCAATGCTCAAAGCATCCTACATTCACGCAGGGTCCAGTGATGTTTTCGATTTTTCTTTTAAAATCTATGTCCAAACGGGAGCTTAGATTCTATTCCTCGTCTAGTTGAGTTCTTCACACTGCTTCATAGTATAATTGAAGCCTTGTTTTGAAATGCTTATCTTAATTCCATGAAATTGCATTCTGTGTCAGGCCGATGCTATCATATCAAAATTTCGAAAAACTGAAAACCCTGAGAAGGTTCTCAATCCAACAATTCTGGTTGCAGCTGACACAGTATGTCTTGCCTCTTTTGCCTTTTCAATCTCCCCGCCAAAAGTTATTTTTCTGTCTTCTATTTGATGAAATGAGACCTATAATATGTTATTTCTGCCCGCGATTTTGAATGATAATAAAATTGTCTGCCTTTTATTGTATTGTTTTTCTTGCTTTTATGCTTTGTACCGGTCCTTTTCTGTGTTTGCTTTTTTTCTTTCAAAATGATTCAATTTCTTGTTGGGATATTGGAGGATAATTGTGATGTCCACAAGCTTGCATAATTTTACAGTTTTTCTTTTTTCACATGATAAATTCTTTGCATTTATTGGACTTTGCTATATAGTTTCAAAGCATACATCATAATTGGCATTAACCTGAATAGCTGGAACTATAATCAGGCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAAGTATACATAATTTCTGTTCTTCTCATCGTTTACGGTTAAATATCCGTTATTGACTTACTATAATGTTTTTTACCATTACATCATCTTTGTTTTCATTTCGTTTTTCCCCCAGCTAAAAATTACTATGTTACTTGAGGTGTTTGGTTCAAATATAATACCTGTCTCATCTTCTTTTGAGCGTAAAGTGGTGCCTTTTCAAATAGCTAATCTAAATTATACAATCCTTCATTCCTTCTGCATGAATTGATAACAATATTTCACAGAGATAATACTATCTTCCTTCAAAGTCCATTGTCAAGATTTGACTAGTGTAGAGCACTCAACGGTGTGACGTAGTGGTCAATGAAGTGGGGAGAACTATGAGGTATCATGTCAAATCCCAACCCCAACTCCAATGTAGGAAAAAATACTAGGTGATTTCTTCGTATCTTCCTAACCCTTAGTGGGTAGATTTATCCATTACCTGTGCGGGTGGGAGATGGAAAGTATAGTGGAATTGTCGAGGCGCACACAAGCTGGCCAAGCACCACTATCATTAGAAAAAAAAGGAAGAAGATCTGATTGGTGTTTAGACATGTACTCCCAGTATTCTCTGTTTTCTGCCATTTATTAATGTGTGCGCTTTTCTATGTTAATGATCTTATCCTAACTTGAAATGGTCTGGAGGTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAGGTTTACCATTGCTTTAATCAATTTCTTACTATATTAGTTTTATAATTCTGCTAGTCTTACGCTGTCAACTTCCAGATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAGGTACCTCTGTTGATTTCTCTCATTTTCAATTATCAAATGGGTCTCTATGGCTTTTTAGTTTTAGTTTTTTTCAATGGGTTTGTGTCTACTTCCTATCTCAAATTGTTGCAATGCATACCTCTTATTCTAAATCTTGATAAATAATAGTTTTAAAAAGTTCGGCAGTGATGAATGACTTCTACGCGTTGGGTAGGCTTATTGGATACTTCACAAGGTTCCAATTCCCTATAGCCATTCAATAGAAAAGTTATGCAGGGATGATTTGGTGGAGAGTAGAAGTTGGGTGGAATTGGAATTACGTATTTGGATTTGTGGACTGAAGAAAAAATCGACAACTCCTGAAATGATGTTGAAATATTGATGACACTCTACAAATTTCTCTTTCCCACATATTCAATACCACATTCTTAGGTTCTCAAGATTATTACATCTAAAAGCACCTATTGTCTAATGATCCTGGGAAATGTTGTCCTACGCTCGACTTAGCTTAATCAAGTGTTTTAAGCATGATACCGGAAAGCACAAACGAGTGGTAGATGGACCTATTGAGTTTCTTCTTCAACAATTCATTCAGATGTCCACAATATTTGCCTAGTCAAATGTGTACACGAACTGCTTGAGCCTTGAGATGTTCAGCATAATCGCTTTTGTTTTTATTTTTCACTCATCTAGGAAGAGTAATAACATTTCTTTTGATTGCAGATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTGGTATAACTTTCATCTGAATTGTTAGTTATTGATCATATCAAATGATGGATGCTGTACTTGTTGTCTTACGTTCTTTATTTTTCTTGATCAGATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTGGTAAGTGTTACACCACCACCTCTCTCTCTAATGTCACCCAACGTAAATCATAGTCGTGATGGTGTTACACATTTGTTTGTTTGACCCTTTGCCTTTATAGAGACCTAAACTTTTAGTACTTGTTAAAGTTCATCTGATATCGAAAATTCTGCATAATATTAATACCACATTTGGGCAGGTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</genome_strand>
        <mrna_strand>TTGTAAAAACCGGGTCAGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCG-AAAAATGGAAGCCAATGCTCCTCAGTTTAAG.............................................................................................................CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG...........................................................................ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGTAGAAGAGGAGAGTGGGACAAAGTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG...........................................................................................ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG..................................................................................................................................................................................GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTGCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTGGCACTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345833" ref_strand="+" ref_description="SGN-U345833        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | 5' nucleotidase family protein, contains Pfam profile: PF05761 5' nucleotidase family | chr1:28227530-28232636 FORWARD | Aliases: F22H5.7, F22H5_7(evalue: 7e-49, score=191) genbank/nr: gi|10092279|gb|AAG12692.1| cytosolic IMP-GMP specific 5'-nucleotidase, putative; 41097-37373 [Arabidopsis thaliana] (evalue: 5e-47, score=191)">
      <seq>ttcagttattgagaattcagcgtgatcacattgaagatgaaatacaccatcttaagtggtctctcaagtctgaagaaactgatgatgccagcaaggagatgttttcggagcttcacaagctgcagtccaaaggtgaggaggtcaggctcagtcatcagcaggcacaacgagaatgtcaccaaaagttccacaaggtctggggacaactaatgaagactggttatcagaattctcgttttgcacatcaggtggaaagatttgcttgcctttataccagtcaagtcacaaacttgagcctgtattccccggataagtactataggcctagtgaggattttatgcctcatgaatttggtatcctctctatttgaggggatcttgtaatccaggggccaaaggcagtgcattttgaagaagagctttgctcattctaatttacattccgagttaccaacatggaaaatctttatgttttgtggtataataacttaaattgtatcatatttgtttgtgctgtctcatatatgcacttatctgattgtgaatttgaattatataaaacaactagaatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132M08-Jtml9/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0132M08.1" temp_strand="-" temp_description="C04HBa0132M08.1  CU457811.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132M08 sequenced_by:sanger upload_account_name:uk">
        <position start="81621" stop="79347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81321" g_stop="81255" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="81254" i_stop="80714" i_length="541">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80713" g_stop="80656" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="125" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80655" i_stop="80458" i_length="198">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80457" g_stop="80398" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="185" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80397" i_stop="80106" i_length="292">
            <donor d_prob="0.746" d_score="1.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80105" g_stop="80043" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="248" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="80042" i_stop="79973" i_length="70">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="79972" g_stop="79647" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="574" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132M08.1" gen_strand="-" ref_id="SGN-U345833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132M08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="81321" e_stop="81255"/>
          <exon e_start="80713" e_stop="80656"/>
          <exon e_start="80457" e_stop="80398"/>
          <exon e_start="80105" e_stop="80043"/>
          <exon e_start="79972" e_stop="79647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAAGTAATTATTATCTCCATTTCATTTTTTATTGTAGAACTCATATGTGCATGAGTTATATTTCGGTGTGCATTTTATCTGTGCAACTGTTTCATGTTGAGTCCCTTCAGCAAAGGAAGTACTAGGATAAAAGAATTAAGGAAAATAAAGAAACAAAATCAAGTTTGCTGGAGAATTCATACAGCCGACTTCAGCTTATTTAAAATTGAGGTTTAGTTGATTCAGTGATTGGTTGAAGGTGGGTAGGAGGATGAGAAAGAATTAGAGCCTTTATTTATGAGTATAGACTTTCAGCCTTTTTGGGACTTTATATATGTCAGTGTGGAGTAGTCTTGTCAGCGAGCAGTTACAAATTTCCTTCAAGTGGAGAAATTATTGAACATTTTATTGTGCATCTTAAACAAAGATATTCGTTGTTCGTCGAACCATTGAGACAGTGAATACTCATACATTATGTTAATATAATTTTTCCATCATCTGAATTTGGCTGAAGGTAAAACTTTTGTCGTTGTCGATCATTTCATGAGCTGTCATTATGCTTCAGGTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAGGTTGGTTATTTCAAGATAGTATCAGTAGGAAGATAGTTTTCAATGTTACAAGAGAAAACAATTTTATATTTGGTCATTCTCTACATTGATACTTGTTACCTGTAGAATCAAATGTACTTGATCGCATTGAAGTGAATAGGTAATGACTTCTGTTATGAGGTTCAACTAATCTGGTGTTTTGATGGTGTCATTTTATAGTCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAGGTACGAGTGTTAAAGAGAGAATTTCCTCTAAATGTGGGATTATTTCTTTAGAGAACAGTTCATCCTTTTTCGGGAACAAGCTTTAGTGAAAGCTATTTAAAAATAACATGCATGTATAATACACAATTATACTTCCTTTAAACTTTGTAAAGTCAATGGATATATCCGTAACTTTATTCCCTTGGTTATATTTGACACTAACATGGTGTACAGTATTAACAAATCGATTTGGATTTTCAACAAGAGAAGTAGTGTACTTTTTTCTTTCTGATGAACTCATTAAACGTTTCAGTTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAGGTACGATTGAATAATTGCAAAGTATATATCCTGCTCTTTGTGAGTGTGATCTTTACTTGTCGATTCACAGGTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</genome_strand>
        <mrna_strand>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG......................................................................................................................................................................................................TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG....................................................................................................................................................................................................................................................................................................TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG......................................................................GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>14</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="352" PGL_stop="4349"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="352" e_stop="796"/>
            <exon e_start="3688" e_stop="4349"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="1.000" e_score="0.996"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="352" e_stop="796" e_length="445"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="1.000">
            <gDNA_intron_boundary i_start="797" i_stop="3687" i_length="2891"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="3688" e_stop="4349" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="352" stop="796"/>
              <exon start="3688" stop="4349"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313178" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATTAAAGGGAAGAGAAGCATAGAGTTGAGTTTGTGATTGCATTTCCGCAAAACGGCATCGTGTTTTTGATCGATAATACTTCGTAGACACAATGTTTAGAAACCAGTACGATACCGATGTGACGACATGGTCGCCGGCGGGAAGGTTATTTCAGGTGGAGTATGCAATGGAGGCAGTGAAGCAAGGTTCGGCGGCGATAGGTTTGAGATCGAAGACGCATGTGATTCTGGCGTCTGTTAACAAGGCTAATTCTGAGCTGTCTTCTCACCAGAAGAAGATCTTCAAAGTTGATGACCACATCGGAGTTGCAATCGCTGGACTTACTGCTGACGGCCGTGTACTTTCTCGTTATATGCGTACTGAGTGTATTAACTATAGTTACTCTTATGAGTCGCCGTTACCTGTCGGGCGTCTGGTTGTTCAGCTTGCTGATAAAGCTCAG : GTTTGCACTCAACGATCCTGGAAACGGCCTTATGGTGTTGGCTTGCTTGTTGGTGGACTGGATGAGTCTGGTGCTCACCTTTATTACAACTGCCCTAGTGGTAACTACTTTGAGTATCAAGCGTTTGCCATTGGATCTCGGTCACAAGCTGCAAAAACCTACTTGGAACGTAAGTTTGAGACTTTCATGGATTCTTCACGTGAAAGCCTGCTTAAGGATGCACTCTTTGCTCTGAGAGAAACTCTGCAAGGGGAAAAACTGACAAGCTCCAATTGCACGGTGGCTGTGGTAGGAGTAGGAGAGGCTTTCCATACCCTGGACAAGGAAACCATACAAGCATTGATCAATGAATTTGAGATAGCTGGAGAAGATGCTCCTGCCGAAGTCCCGGAAGAGGCTGCAACTGATGAACCAGCAGCACCTGAAGAAGGTGCTGCCCCTGCTGATCAAGGAGCTGCCCCAATGGATATTTGATAATGTTATGTCTTCCTTTAGGCCTCACTTCTTTCATATTCAGAGATTTCTTCTTAGAATGTTGAGATTTTGTGTGGCACAATGGGTTATATTTTCTGCTTGGATGTTTTATTATGCAATCATGCTTTACTTTGGTCCAAACATCTTTAAAACTCATGCTTCTGAAGTTGAACTAAAAACAGCTTTAA</gDNA_template>
            <first_frame> S  I  K  G  K  R  S  I  E  L  S  L  *  L  H  F  R  K  T  A  S  C  F  *  S  I  I  L  R  R  H  N  V  *  K  P  V  R  Y  R  C  D  D  M  V  A  G  G  K  V  I  S  G  G  V  C  N  G  G  S  E  A  R  F  G  G  D  R  F  E  I  E  D  A  C  D  S  G  V  C  *  Q  G  *  F  *  A  V  F  S  P  E  E  D  L  Q  S  *  *  P  H  R  S  C  N  R  W  T  Y  C  *  R  P  C  T  F  S  L  Y  A  Y  *  V  Y  *  L  *  L  L  L  *  V  A  V  T  C  R  A  S  G  C  S  A  C  *  *  S  S   : G  L  H  S  T  I  L  E  T  A  L  W  C  W  L  A  C  W  W  T  G  *  V  W  C  S  P  L  L  Q  L  P  *  W  *  L  L  *  V  S  S  V  C  H  W  I  S  V  T  S  C  K  N  L  L  G  T  *  V  *  D  F  H  G  F  F  T  *  K  P  A  *  G  C  T  L  C  S  E  R  N  S  A  R  G  K  T  D  K  L  Q  L  H  G  G  C  G  R  S  R  R  G  F  P  Y  P  G  Q  G  N  H  T  S  I  D  Q  *  I  *  D  S  W  R  R  C  S  C  R  S  P  G  R  G  C  N  *  *  T  S  S  T  *  R  R  C  C  P  C  *  S  R  S  C  P  N  G  Y  L  I  M  L  C  L  P  L  G  L  T  S  F  I  F  R  D  F  F  L  E  C  *  D  F  V  W  H  N  G  L  Y  F  L  L  G  C  F  I  M  Q  S  C  F  T  L  V  Q  T  S  L  K  L  M  L  L  K  L  N  *  K  Q  L  * </first_frame>
            <second_frame>  P  L  K  G  R  E  A  *  S  *  V  C  D  C  I  S  A  K  R  H  R  V  F  D  R  *  Y  F  V  D  T  M  F  R  N  Q  Y  D  T  D  V  T  T  W  S  P  A  G  R  L  F  Q  V  E  Y  A  M  E  A  V  K  Q  G  S  A  A  I  G  L  R  S  K  T  H  V  I  L  A  S  V  N  K  A  N  S  E  L  S  S  H  Q  K  K  I  F  K  V  D  D  H  I  G  V  A  I  A  G  L  T  A  D  G  R  V  L  S  R  Y  M  R  T  E  C  I  N  Y  S  Y  S  Y  E  S  P  L  P  V  G  R  L  V  V  Q  L  A  D  K  A  Q  :  V  C  T  Q  R  S  W  K  R  P  Y  G  V  G  L  L  V  G  G  L  D  E  S  G  A  H  L  Y  Y  N  C  P  S  G  N  Y  F  E  Y  Q  A  F  A  I  G  S  R  S  Q  A  A  K  T  Y  L  E  R  K  F  E  T  F  M  D  S  S  R  E  S  L  L  K  D  A  L  F  A  L  R  E  T  L  Q  G  E  K  L  T  S  S  N  C  T  V  A  V  V  G  V  G  E  A  F  H  T  L  D  K  E  T  I  Q  A  L  I  N  E  F  E  I  A  G  E  D  A  P  A  E  V  P  E  E  A  A  T  D  E  P  A  A  P  E  E  G  A  A  P  A  D  Q  G  A  A  P  M  D  I  *  *  C  Y  V  F  L  *  A  S  L  L  S  Y  S  E  I  S  S  *  N  V  E  I  L  C  G  T  M  G  Y  I  F  C  L  D  V  L  L  C  N  H  A  L  L  W  S  K  H  L  *  N  S  C  F  *  S  *  T  K  N  S  F   </second_frame>
            <third_frame>   H  *  R  E  E  K  H  R  V  E  F  V  I  A  F  P  Q  N  G  I  V  F  L  I  D  N  T  S  *  T  Q  C  L  E  T  S  T  I  P  M  *  R  H  G  R  R  R  E  G  Y  F  R  W  S  M  Q  W  R  Q  *  S  K  V  R  R  R  *  V  *  D  R  R  R  M  *  F  W  R  L  L  T  R  L  I  L  S  C  L  L  T  R  R  R  S  S  K  L  M  T  T  S  E  L  Q  S  L  D  L  L  L  T  A  V  Y  F  L  V  I  C  V  L  S  V  L  T  I  V  T  L  M  S  R  R  Y  L  S  G  V  W  L  F  S  L  L  I  K  L  R :   F  A  L  N  D  P  G  N  G  L  M  V  L  A  C  L  L  V  D  W  M  S  L  V  L  T  F  I  T  T  A  L  V  V  T  T  L  S  I  K  R  L  P  L  D  L  G  H  K  L  Q  K  P  T  W  N  V  S  L  R  L  S  W  I  L  H  V  K  A  C  L  R  M  H  S  L  L  *  E  K  L  C  K  G  K  N  *  Q  A  P  I  A  R  W  L  W  *  E  *  E  R  L  S  I  P  W  T  R  K  P  Y  K  H  *  S  M  N  L  R  *  L  E  K  M  L  L  P  K  S  R  K  R  L  Q  L  M  N  Q  Q  H  L  K  K  V  L  P  L  L  I  K  E  L  P  Q  W  I  F  D  N  V  M  S  S  F  R  P  H  F  F  H  I  Q  R  F  L  L  R  M  L  R  F  C  V  A  Q  W  V  I  F  S  A  W  M  F  Y  Y  A  I  M  L  Y  F  G  P  N  I  F  K  T  H  A  S  E  V  E  L  K  T  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="431" stop="796"/>
                    <exon start="3688" stop="4161"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>837</number_coding_nucleotides>
                  <number_encoded_amino_acids>279</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFVDTMFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVILASVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRTECINYSYSYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFETFMDSSRESLLKDALFALRETLQGEKLTSSNCTVAVVGVGEAFHTLDKETIQALINEFEIAGEDAPAEVPEEAATDEPAAPEEGAAPADQGAAPMDI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="1449" e_stop="1971"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1449" e_stop="1971" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1449" stop="1971"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTCCACAAATACTTCAGTTATTTTTATAGTACTGCTGAAATGGTGGAAGTTTTTTTCATCTGGGTAATAGCTTGAACACCTTTATTGCCCTTTTGTGCAGTTCTTGTAAAATGCCTGCTCATTTTACACTTGTCAAATATCCATTAGATCAATTTGAAACTTGGGTGAAAAAAGTTCCATATTTAAGATTTAGCAGAGAACCATCTAAGTTCAAATTATGATTTTCTGCACTTTTAGTGCATGCAAATGCTTAAACATATTCCATAAGAGTTTGTCTTTTTCTAGAGAAGTAAGTAGTGTTATATATCATATTCTTTATGTTTTGTTTGAATACAAGTGGGGCCACTCGACACTAGTGCAGATCCAGAAGTCACACTCATCATCACCTAAGATACAACCAATGAATGTATAATACGACAAACTCGCTTTGTTTCACTTTATAAGATAATATGATTGGGTGTTGAGTCTAAGAAAGAAAAGAAGACCTCTACAATTTGCGGTCTTAAATATGTCATGATAT</gDNA_template>
            <first_frame> K  L  H  K  Y  F  S  Y  F  Y  S  T  A  E  M  V  E  V  F  F  I  W  V  I  A  *  T  P  L  L  P  F  C  A  V  L  V  K  C  L  L  I  L  H  L  S  N  I  H  *  I  N  L  K  L  G  *  K  K  F  H  I  *  D  L  A  E  N  H  L  S  S  N  Y  D  F  L  H  F  *  C  M  Q  M  L  K  H  I  P  *  E  F  V  F  F  *  R  S  K  *  C  Y  I  S  Y  S  L  C  F  V  *  I  Q  V  G  P  L  D  T  S  A  D  P  E  V  T  L  I  I  T  *  D  T  T  N  E  C  I  I  R  Q  T  R  F  V  S  L  Y  K  I  I  *  L  G  V  E  S  K  K  E  K  K  T  S  T  I  C  G  L  K  Y  V  M  I  </first_frame>
            <second_frame>  N  S  T  N  T  S  V  I  F  I  V  L  L  K  W  W  K  F  F  S  S  G  *  *  L  E  H  L  Y  C  P  F  V  Q  F  L  *  N  A  C  S  F  Y  T  C  Q  I  S  I  R  S  I  *  N  L  G  E  K  S  S  I  F  K  I  *  Q  R  T  I  *  V  Q  I  M  I  F  C  T  F  S  A  C  K  C  L  N  I  F  H  K  S  L  S  F  S  R  E  V  S  S  V  I  Y  H  I  L  Y  V  L  F  E  Y  K  W  G  H  S  T  L  V  Q  I  Q  K  S  H  S  S  S  P  K  I  Q  P  M  N  V  *  Y  D  K  L  A  L  F  H  F  I  R  *  Y  D  W  V  L  S  L  R  K  K  R  R  P  L  Q  F  A  V  L  N  M  S  *  Y </second_frame>
            <third_frame>   T  P  Q  I  L  Q  L  F  L  *  Y  C  *  N  G  G  S  F  F  H  L  G  N  S  L  N  T  F  I  A  L  L  C  S  S  C  K  M  P  A  H  F  T  L  V  K  Y  P  L  D  Q  F  E  T  W  V  K  K  V  P  Y  L  R  F  S  R  E  P  S  K  F  K  L  *  F  S  A  L  L  V  H  A  N  A  *  T  Y  S  I  R  V  C  L  F  L  E  K  *  V  V  L  Y  I  I  F  F  M  F  C  L  N  T  S  G  A  T  R  H  *  C  R  S  R  S  H  T  H  H  H  L  R  Y  N  Q  *  M  Y  N  T  T  N  S  L  C  F  T  L  *  D  N  M  I  G  C  *  V  *  E  R  K  E  D  L  Y  N  L  R  S  *  I  C  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1660" stop="1863"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VQIMIFCTFSACKCLNIFHKSLSFSREVSSVIYHILYVLFEYKWGHSTLVQIQKSHSSSPKIQPMNV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="16726" PGL_stop="10500"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16726" e_stop="16454"/>
            <exon e_start="14258" e_stop="14115"/>
            <exon e_start="12597" e_stop="12472"/>
            <exon e_start="12402" e_stop="12251"/>
            <exon e_start="11414" e_stop="10500"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.949" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.935" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.986" e_score="0.987"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16726" e_stop="16454" e_length="273"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.949">
            <gDNA_intron_boundary i_start="16453" i_stop="14259" i_length="2195"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="14258" e_stop="14115" e_length="144"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14114" i_stop="12598" i_length="1517"/>
          </intron>
          <exon e_serial="3" e_score="0.992">
            <gDNA_exon_boundary e_start="12597" e_stop="12472" e_length="126"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.935">
            <gDNA_intron_boundary i_start="12471" i_stop="12403" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="12402" e_stop="12251" e_length="152"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.986">
            <gDNA_intron_boundary i_start="12250" i_stop="11415" i_length="836"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="11414" e_stop="10500" e_length="915"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16726" stop="16454"/>
              <exon start="14258" stop="14115"/>
              <exon start="12597" stop="12472"/>
              <exon start="12402" stop="12251"/>
              <exon start="11414" stop="10500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGCATGTGGTATTCACTATTCTGCCCTACCAATTACTCTGTGGAAAGCCTTCATTTCTCACTCAATCGTCCCTTTTGCTACACAAACACCTTGACTGCACAGCTCTACTGATCAGAAAGAGGGCTAAACCGAAAGAAGAAGAAGGAGGAGGTCAAACATGGGAACCCTCGGGAAAGCAATTTACTCCCTGGGATCCATCGTTCGAGCGACCGGCAAAGCTCTTGATCGCGTCGGAAATCGCCTACAAGGCAGCTCCCACATAGAGGAACACC : TGTCCAGGCATCGGACTCTTATGAACGTATTCGATAAAGCTCCGGTGGTGGATAAGGATGTATTTGTAGCTCCAGGTGCCTCAGTCATTGGAGATGTCCATGTGGGACGCAATTCATCTATTTGGTATGGATGTGTACTAAGAG : GTGATGTTAACAGCATCAGTGTCGGATCTGGTACCAATATACAGGACAACTCCCTTGTTCATGTGGCCAAATCAAATATAAGTCAAAAGGTGCTGCCCACCATCATAGGGAACAATGTTACTGTTG : GTCATAGTGCTGTTGTACATGGCTGCACCATTGAGGATGAGGCCTTCATTGGTATGGGGGCCACACTGCTTGATGGTGTTCATGTAGAGAAACATGCCATGGTTGCTGCAGGAGCCCTTGTGAAACAGAACACAAGGATTCCCTCCGGAGAG : GTATGGGCAGGCAATCCCGCTAAGTTTCTGAGGAAGCTAACTGATGAAGAGATAGCCTTCATTGCTCAGTCAGCAACCAACTACTGTAACCTTGCTCGTGTCCATGCAGCTGAGAATTCCAAGTCCTTTGACGAAATTGAATTTGAAAAGATGCTTCGTAAGAAGTATGCCAAACGTGATGAGGAATATGATTCTATGATTGGTGTTGTCCGTGAAACACCTCCCGAGCTTGTACTTCCTGATAATATCCTCCCCGAAAAAGCTGCTAAGAGCATCGCCCAATGAGATCAGTGCCCAAGCAACTCTCTCTTTTTTTGCTTTCCAGAGATTTATTTTACACCGTGAGCATCTGTATGGAGAACAGTCATGGATATTGGCTGTTACCCTTCCAAATAATATCAAACTTATTGGATAGCATCGGTACGTCACTGCTTTGTAGTTAAGACTTTTGCCCCTTATTTCCCAGAAATTCTTCAGCTTGGAAAAGGAAGTTACGCCCACAAGTGCTTGTAACTCTGAGAAATCATTTTCAATAGATTTATTTGGTAAATTGTTATTGGAATAACATAAAACATTGACAGCACATTCCAAACATATTTCTTCATCAGTTGAAGCATTTATGTTTAGCAATGCCCTTCTTGTTTGAGATTCCATGCATTATTGAGATCCATGACTAAGTAAGCACAGTGCATGTGGGGAAATCAATGACCTAAAGCCAAGGCATGTTAGCTATAGTTATATTAATTATAATATTATAAAGGTAGAGATGATTGGCTGATTGGGGTATGAAGAGCCAAAAGATGAGTAATTTCCCCGTAAATTCAGCCTTGTCTTATTGTGTTTTTATAATGACACTGTATATGAATGATTGGCATCTGTTGAATTGTTTGGTTTTGAATGTAGTCATCTTTGGTC</gDNA_template>
            <first_frame> R  H  V  V  F  T  I  L  P  Y  Q  L  L  C  G  K  P  S  F  L  T  Q  S  S  L  L  L  H  K  H  L  D  C  T  A  L  L  I  R  K  R  A  K  P  K  E  E  E  G  G  G  Q  T  W  E  P  S  G  K  Q  F  T  P  W  D  P  S  F  E  R  P  A  K  L  L  I  A  S  E  I  A  Y  K  A  A  P  T  *  R  N  T  :  C  P  G  I  G  L  L  *  T  Y  S  I  K  L  R  W  W  I  R  M  Y  L  *  L  Q  V  P  Q  S  L  E  M  S  M  W  D  A  I  H  L  F  G  M  D  V  Y  *  E  :  V  M  L  T  A  S  V  S  D  L  V  P  I  Y  R  T  T  P  L  F  M  W  P  N  Q  I  *  V  K  R  C  C  P  P  S  *  G  T  M  L  L  L  :  V  I  V  L  L  Y  M  A  A  P  L  R  M  R  P  S  L  V  W  G  P  H  C  L  M  V  F  M  *  R  N  M  P  W  L  L  Q  E  P  L  *  N  R  T  Q  G  F  P  P  E  R :   Y  G  Q  A  I  P  L  S  F  *  G  S  *  L  M  K  R  *  P  S  L  L  S  Q  Q  P  T  T  V  T  L  L  V  S  M  Q  L  R  I  P  S  P  L  T  K  L  N  L  K  R  C  F  V  R  S  M  P  N  V  M  R  N  M  I  L  *  L  V  L  S  V  K  H  L  P  S  L  Y  F  L  I  I  S  S  P  K  K  L  L  R  A  S  P  N  E  I  S  A  Q  A  T  L  S  F  F  A  F  Q  R  F  I  L  H  R  E  H  L  Y  G  E  Q  S  W  I  L  A  V  T  L  P  N  N  I  K  L  I  G  *  H  R  Y  V  T  A  L  *  L  R  L  L  P  L  I  S  Q  K  F  F  S  L  E  K  E  V  T  P  T  S  A  C  N  S  E  K  S  F  S  I  D  L  F  G  K  L  L  L  E  *  H  K  T  L  T  A  H  S  K  H  I  S  S  S  V  E  A  F  M  F  S  N  A  L  L  V  *  D  S  M  H  Y  *  D  P  *  L  S  K  H  S  A  C  G  E  I  N  D  L  K  P  R  H  V  S  Y  S  Y  I  N  Y  N  I  I  K  V  E  M  I  G  *  L  G  Y  E  E  P  K  D  E  *  F  P  R  K  F  S  L  V  L  L  C  F  Y  N  D  T  V  Y  E  *  L  A  S  V  E  L  F  G  F  E  C  S  H  L  W   </first_frame>
            <second_frame>  G  M  W  Y  S  L  F  C  P  T  N  Y  S  V  E  S  L  H  F  S  L  N  R  P  F  C  Y  T  N  T  L  T  A  Q  L  Y  *  S  E  R  G  L  N  R  K  K  K  K  E  E  V  K  H  G  N  P  R  E  S  N  L  L  P  G  I  H  R  S  S  D  R  Q  S  S  *  S  R  R  K  S  P  T  R  Q  L  P  H  R  G  T  P :   V  Q  A  S  D  S  Y  E  R  I  R  *  S  S  G  G  G  *  G  C  I  C  S  S  R  C  L  S  H  W  R  C  P  C  G  T  Q  F  I  Y  L  V  W  M  C  T  K  R :   *  C  *  Q  H  Q  C  R  I  W  Y  Q  Y  T  G  Q  L  P  C  S  C  G  Q  I  K  Y  K  S  K  G  A  A  H  H  H  R  E  Q  C  Y  C  W :   S  *  C  C  C  T  W  L  H  H  *  G  *  G  L  H  W  Y  G  G  H  T  A  *  W  C  S  C  R  E  T  C  H  G  C  C  R  S  P  C  E  T  E  H  K  D  S  L  R  R   : G  M  G  R  Q  S  R  *  V  S  E  E  A  N  *  *  R  D  S  L  H  C  S  V  S  N  Q  L  L  *  P  C  S  C  P  C  S  *  E  F  Q  V  L  *  R  N  *  I  *  K  D  A  S  *  E  V  C  Q  T  *  *  G  I  *  F  Y  D  W  C  C  P  *  N  T  S  R  A  C  T  S  *  *  Y  P  P  R  K  S  C  *  E  H  R  P  M  R  S  V  P  K  Q  L  S  L  F  L  L  S  R  D  L  F  Y  T  V  S  I  C  M  E  N  S  H  G  Y  W  L  L  P  F  Q  I  I  S  N  L  L  D  S  I  G  T  S  L  L  C  S  *  D  F  C  P  L  F  P  R  N  S  S  A  W  K  R  K  L  R  P  Q  V  L  V  T  L  R  N  H  F  Q  *  I  Y  L  V  N  C  Y  W  N  N  I  K  H  *  Q  H  I  P  N  I  F  L  H  Q  L  K  H  L  C  L  A  M  P  F  L  F  E  I  P  C  I  I  E  I  H  D  *  V  S  T  V  H  V  G  K  S  M  T  *  S  Q  G  M  L  A  I  V  I  L  I  I  I  L  *  R  *  R  *  L  A  D  W  G  M  K  S  Q  K  M  S  N  F  P  V  N  S  A  L  S  Y  C  V  F  I  M  T  L  Y  M  N  D  W  H  L  L  N  C  L  V  L  N  V  V  I  F  G  </second_frame>
            <third_frame>   A  C  G  I  H  Y  S  A  L  P  I  T  L  W  K  A  F  I  S  H  S  I  V  P  F  A  T  Q  T  P  *  L  H  S  S  T  D  Q  K  E  G  *  T  E  R  R  R  R  R  R  S  N  M  G  T  L  G  K  A  I  Y  S  L  G  S  I  V  R  A  T  G  K  A  L  D  R  V  G  N  R  L  Q  G  S  S  H  I  E  E  H   : L  S  R  H  R  T  L  M  N  V  F  D  K  A  P  V  V  D  K  D  V  F  V  A  P  G  A  S  V  I  G  D  V  H  V  G  R  N  S  S  I  W  Y  G  C  V  L  R   : G  D  V  N  S  I  S  V  G  S  G  T  N  I  Q  D  N  S  L  V  H  V  A  K  S  N  I  S  Q  K  V  L  P  T  I  I  G  N  N  V  T  V   : G  H  S  A  V  V  H  G  C  T  I  E  D  E  A  F  I  G  M  G  A  T  L  L  D  G  V  H  V  E  K  H  A  M  V  A  A  G  A  L  V  K  Q  N  T  R  I  P  S  G  E  :  V  W  A  G  N  P  A  K  F  L  R  K  L  T  D  E  E  I  A  F  I  A  Q  S  A  T  N  Y  C  N  L  A  R  V  H  A  A  E  N  S  K  S  F  D  E  I  E  F  E  K  M  L  R  K  K  Y  A  K  R  D  E  E  Y  D  S  M  I  G  V  V  R  E  T  P  P  E  L  V  L  P  D  N  I  L  P  E  K  A  A  K  S  I  A  Q  *  D  Q  C  P  S  N  S  L  F  F  C  F  P  E  I  Y  F  T  P  *  A  S  V  W  R  T  V  M  D  I  G  C  Y  P  S  K  *  Y  Q  T  Y  W  I  A  S  V  R  H  C  F  V  V  K  T  F  A  P  Y  F  P  E  I  L  Q  L  G  K  G  S  Y  A  H  K  C  L  *  L  *  E  I  I  F  N  R  F  I  W  *  I  V  I  G  I  T  *  N  I  D  S  T  F  Q  T  Y  F  F  I  S  *  S  I  Y  V  *  Q  C  P  S  C  L  R  F  H  A  L  L  R  S  M  T  K  *  A  Q  C  M  W  G  N  Q  *  P  K  A  K  A  C  *  L  *  L  Y  *  L  *  Y  Y  K  G  R  D  D  W  L  I  G  V  *  R  A  K  R  *  V  I  S  P  *  I  Q  P  C  L  I  V  F  L  *  *  H  C  I  *  M  I  G  I  C  *  I  V  W  F  *  M  *  S  S  L  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16598" stop="16454"/>
                    <exon start="14258" stop="14115"/>
                    <exon start="12597" stop="12472"/>
                    <exon start="12402" stop="12251"/>
                    <exon start="11414" stop="11130"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>849</number_coding_nucleotides>
                  <number_encoded_amino_acids>283</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TERRRRRRSNMGTLGKAIYSLGSIVRATGKALDRVGNRLQGSSHIEEHLSRHRTLMNVFDKAPVVDKDVFVAPGASVIGDVHVGRNSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNISQKVLPTIIGNNVTVGHSAVVHGCTIEDEAFIGMGATLLDGVHVEKHAMVAAGALVKQNTRIPSGEVWAGNPAKFLRKLTDEEIAFIAQSATNYCNLARVHAAENSKSFDEIEFEKMLRKKYAKRDEEYDSMIGVVRETPPELVLPDNILPEKAAKSIAQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="10938" PGL_stop="11239"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10938" e_stop="11239"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.940"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.940">
            <gDNA_exon_boundary e_start="10938" e_stop="11239" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10938" stop="11239"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335785" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGAAGAATTTCTGGGAAATAAGGGGCAAAAGTCTTAACTACAAAGCAGTGACGTACCGATGCTATCCAATAAGTTTGATATTATTTGGAAGGGTAACAGCCAATATCCATGACTGTTCTCCATACAGATGCTCACGGTGTAAAATAAATCTCTGGAAAGCAAAAAAAGAGAGAGTTGCTTGGGCACTGATCTCATTGGGCGATGCTCTTAGCAGCTTTTTCGGGGAGGATATTATCAGGAAGTACAAGCTCGGGAGGTGTTTCACGGACAACACCAATCATAGAATCATATTCCTCATCAC</gDNA_template>
            <first_frame> L  K  N  F  W  E  I  R  G  K  S  L  N  Y  K  A  V  T  Y  R  C  Y  P  I  S  L  I  L  F  G  R  V  T  A  N  I  H  D  C  S  P  Y  R  C  S  R  C  K  I  N  L  W  K  A  K  K  E  R  V  A  W  A  L  I  S  L  G  D  A  L  S  S  F  F  G  E  D  I  I  R  K  Y  K  L  G  R  C  F  T  D  N  T  N  H  R  I  I  F  L  I   </first_frame>
            <second_frame>  *  R  I  S  G  K  *  G  A  K  V  L  T  T  K  Q  *  R  T  D  A  I  Q  *  V  *  Y  Y  L  E  G  *  Q  P  I  S  M  T  V  L  H  T  D  A  H  G  V  K  *  I  S  G  K  Q  K  K  R  E  L  L  G  H  *  S  H  W  A  M  L  L  A  A  F  S  G  R  I  L  S  G  S  T  S  S  G  G  V  S  R  T  T  P  I  I  E  S  Y  S  S  S  </second_frame>
            <third_frame>   E  E  F  L  G  N  K  G  Q  K  S  *  L  Q  S  S  D  V  P  M  L  S  N  K  F  D  I  I  W  K  G  N  S  Q  Y  P  *  L  F  S  I  Q  M  L  T  V  *  N  K  S  L  E  S  K  K  R  E  S  C  L  G  T  D  L  I  G  R  C  S  *  Q  L  F  R  G  G  Y  Y  Q  E  V  Q  A  R  E  V  F  H  G  Q  H  Q  S  *  N  H  I  P  H  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10938" stop="11237"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNFWEIRGKSLNYKAVTYRCYPISLILFGRVTANIHDCSPYRCSRCKINLWKAKKERVAWALISLGDALSSFFGEDIIRKYKLGRCFTDNTNHRIIFLI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="24729" PGL_stop="23753"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24729" e_stop="23753"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="24729" e_stop="23753" e_length="977"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24729" stop="23753"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331953" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATATGTGAATCAATGATTCACACGATATTAACTCAATTTTTTAAGGGGAGAGTTCATCAAGGTAGCTTGCTACTTGGGCTCTCGTGTGTCGCCTATGCGTTGCACTACTGCATGGGCCTGGCACACCCCACCAAATCTACTTCAAATCTTTTGGTTGATATATTGTGTAATGTAATCTAATTCAAATCTTTCGGTTGATATATTGTGTAATGTGTTCTTATTATGTTTATACATACTTATATTTATTTATTTAATTTTATATAATTTTAAATGTCGTGTATGGGCATAAGCTAAGTTAGATTTACAGCGAAATATAATTTTGGTTAAAATTGAACACTGTTTTTAGATCTTGTTTGACAATTTGAAAGTTAACAATGAGTATTGTTGTGGCTTTGCTAATATTGTTTTTCAGTAGTAATCTCCTTTGATGAATTGATTGAGTTGCTTCACTTCTCCAGTTTGTTGATCCACCACTGCTTTGACAATATCCGCCACAGAAATCATGCCTACTACCTTCCCATCGATCACTGGAACATGTCGTATGTGGTGCTCTGTGATCATAAAACGTTCCATCACATTTCCATAGTGCATTAAGCATCAGTAACTTCGCGAGTTAGAACTAATACTTACCACTCATGAGCTGCATTGCTTGAAGAATGTTTGTGTCCGATGTGACGGTTATCAGCTTGCTCTGTTGCAATGGTAGTACTAATATTTGAGCACAAAACAGAAGACAGATGAAAAAAAGATAAAGCCAGGAAGACCGATATCTATAGAGTACCTGCTCGGTCATAATATCTCCGACTCTTGTGTATTTAGATGATCTATCCTGTACAATTACCTTTCGCAAATAATCTGTACGTCTCTTGTACAATGTGCATAGATGAATAAGTTCAACATTGTGTGTATTACTAAAGATCAATTAGAGAC</gDNA_template>
            <first_frame> L  A  K  I  K  C  S  I  C  S  Y  Q  F  N  I  *  Y  V  N  Q  *  F  T  R  Y  *  L  N  F  L  R  G  E  F  I  K  V  A  C  Y  L  G  S  R  V  S  P  M  R  C  T  T  A  W  A  W  H  T  P  P  N  L  L  Q  I  F  W  L  I  Y  C  V  M  *  S  N  S  N  L  S  V  D  I  L  C  N  V  F  L  L  C  L  Y  I  L  I  F  I  Y  L  I  L  Y  N  F  K  C  R  V  W  A  *  A  K  L  D  L  Q  R  N  I  I  L  V  K  I  E  H  C  F  *  I  L  F  D  N  L  K  V  N  N  E  Y  C  C  G  F  A  N  I  V  F  Q  *  *  S  P  L  M  N  *  L  S  C  F  T  S  P  V  C  *  S  T  T  A  L  T  I  S  A  T  E  I  M  P  T  T  F  P  S  I  T  G  T  C  R  M  W  C  S  V  I  I  K  R  S  I  T  F  P  *  C  I  K  H  Q  *  L  R  E  L  E  L  I  L  T  T  H  E  L  H  C  L  K  N  V  C  V  R  C  D  G  Y  Q  L  A  L  L  Q  W  *  Y  *  Y  L  S  T  K  Q  K  T  D  E  K  K  I  K  P  G  R  P  I  S  I  E  Y  L  L  G  H  N  I  S  D  S  C  V  F  R  *  S  I  L  Y  N  Y  L  S  Q  I  I  C  T  S  L  V  Q  C  A  *  M  N  K  F  N  I  V  C  I  T  K  D  Q  L  E   </first_frame>
            <second_frame>  W  L  R  S  S  V  V  S  V  L  I  S  L  I  S  D  M  *  I  N  D  S  H  D  I  N  S  I  F  *  G  E  S  S  S  R  *  L  A  T  W  A  L  V  C  R  L  C  V  A  L  L  H  G  P  G  T  P  H  Q  I  Y  F  K  S  F  G  *  Y  I  V  *  C  N  L  I  Q  I  F  R  L  I  Y  C  V  M  C  S  Y  Y  V  Y  T  Y  L  Y  L  F  I  *  F  Y  I  I  L  N  V  V  Y  G  H  K  L  S  *  I  Y  S  E  I  *  F  W  L  K  L  N  T  V  F  R  S  C  L  T  I  *  K  L  T  M  S  I  V  V  A  L  L  I  L  F  F  S  S  N  L  L  *  *  I  D  *  V  A  S  L  L  Q  F  V  D  P  P  L  L  *  Q  Y  P  P  Q  K  S  C  L  L  P  S  H  R  S  L  E  H  V  V  C  G  A  L  *  S  *  N  V  P  S  H  F  H  S  A  L  S  I  S  N  F  A  S  *  N  *  Y  L  P  L  M  S  C  I  A  *  R  M  F  V  S  D  V  T  V  I  S  L  L  C  C  N  G  S  T  N  I  *  A  Q  N  R  R  Q  M  K  K  R  *  S  Q  E  D  R  Y  L  *  S  T  C  S  V  I  I  S  P  T  L  V  Y  L  D  D  L  S  C  T  I  T  F  R  K  *  S  V  R  L  L  Y  N  V  H  R  *  I  S  S  T  L  C  V  L  L  K  I  N  *  R  </second_frame>
            <third_frame>   G  *  D  Q  V  *  Y  L  F  L  S  V  *  Y  L  I  C  E  S  M  I  H  T  I  L  T  Q  F  F  K  G  R  V  H  Q  G  S  L  L  L  G  L  S  C  V  A  Y  A  L  H  Y  C  M  G  L  A  H  P  T  K  S  T  S  N  L  L  V  D  I  L  C  N  V  I  *  F  K  S  F  G  *  Y  I  V  *  C  V  L  I  M  F  I  H  T  Y  I  Y  L  F  N  F  I  *  F  *  M  S  C  M  G  I  S  *  V  R  F  T  A  K  Y  N  F  G  *  N  *  T  L  F  L  D  L  V  *  Q  F  E  S  *  Q  *  V  L  L  W  L  C  *  Y  C  F  S  V  V  I  S  F  D  E  L  I  E  L  L  H  F  S  S  L  L  I  H  H  C  F  D  N  I  R  H  R  N  H  A  Y  Y  L  P  I  D  H  W  N  M  S  Y  V  V  L  C  D  H  K  T  F  H  H  I  S  I  V  H  *  A  S  V  T  S  R  V  R  T  N  T  Y  H  S  *  A  A  L  L  E  E  C  L  C  P  M  *  R  L  S  A  C  S  V  A  M  V  V  L  I  F  E  H  K  T  E  D  R  *  K  K  D  K  A  R  K  T  D  I  Y  R  V  P  A  R  S  *  Y  L  R  L  L  C  I  *  M  I  Y  P  V  Q  L  P  F  A  N  N  L  Y  V  S  C  T  M  C  I  D  E  *  V  Q  H  C  V  Y  Y  *  R  S  I  R  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24283" stop="24089"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCFSVVISFDELIELLHFSSLLIHHCFDNIRHRNHAYYLPIDHWNMSYVVLCDHKTFHHISIVH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="36541" PGL_stop="36713"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36541" e_stop="36713"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="36541" e_stop="36713" e_length="173"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36541" stop="36713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345590" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCATCCTCCTTTCATTTCTTCAATTTCACACCCCCCCACATAACATTAGACATAGGGTTAGGGTTTCTTTTTTTTTTTTTTTAAATTAACAAAAAAAAAAAAATCATGGCATTAGGTGGTGGTAATGAGGAAAAAGAGATGAGAATTTCAGGTTTTCAAAATATAGATCTTG</gDNA_template>
            <first_frame> P  I  L  L  S  F  L  Q  F  H  T  P  P  H  N  I  R  H  R  V  R  V  S  F  F  F  F  L  N  *  Q  K  K  K  N  H  G  I  R  W  W  *  *  G  K  R  D  E  N  F  R  F  S  K  Y  R  S   </first_frame>
            <second_frame>  P  S  S  F  H  F  F  N  F  T  P  P  H  I  T  L  D  I  G  L  G  F  L  F  F  F  F  *  I  N  K  K  K  K  I  M  A  L  G  G  G  N  E  E  K  E  M  R  I  S  G  F  Q  N  I  D  L  </second_frame>
            <third_frame>   H  P  P  F  I  S  S  I  S  H  P  P  T  *  H  *  T  *  G  *  G  F  F  F  F  F  F  K  L  T  K  K  K  K  S  W  H  *  V  V  V  M  R  K  K  R  *  E  F  Q  V  F  K  I  *  I  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="38173" PGL_stop="38526"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38173" e_stop="38526"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38173" e_stop="38526" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38173" stop="38526"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330701" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGCTGAAGTACAAAGATTTTGCTCACAAGTTGGAGTCAAGAGACAGGTTTTTAAGGTTTGGATGCATAATAATAAGAACCCTTCTTCTGCTAAAAAAAATATAATACAAGAAGATCAACCTTAATTAATTTTGTTTAATTAAGGTTTTGAGGGAAAAAATGAAATTAAATTTCTTGGGATTTGGTTTATGCTTATGTAATCTTACTAGGAATCGTACGTAGCTAGTTTTTTTTGTTTTTTTTTTGGGGGGGTCTATGTAGTATTATTGTAACTATATGGAACCACTTAATTAGATTTTTATTTTTATTAATTGTTGTACTTTGGAACCTTTATTCATCTGAAAATTTTCAGCT</gDNA_template>
            <first_frame> M  L  K  Y  K  D  F  A  H  K  L  E  S  R  D  R  F  L  R  F  G  C  I  I  I  R  T  L  L  L  L  K  K  I  *  Y  K  K  I  N  L  N  *  F  C  L  I  K  V  L  R  E  K  M  K  L  N  F  L  G  F  G  L  C  L  C  N  L  T  R  N  R  T  *  L  V  F  F  V  F  F  L  G  G  S  M  *  Y  Y  C  N  Y  M  E  P  L  N  *  I  F  I  F  I  N  C  C  T  L  E  P  L  F  I  *  K  F  S  A </first_frame>
            <second_frame>  C  *  S  T  K  I  L  L  T  S  W  S  Q  E  T  G  F  *  G  L  D  A  *  *  *  E  P  F  F  C  *  K  K  Y  N  T  R  R  S  T  L  I  N  F  V  *  L  R  F  *  G  K  K  *  N  *  I  S  W  D  L  V  Y  A  Y  V  I  L  L  G  I  V  R  S  *  F  F  L  F  F  F  W  G  G  L  C  S  I  I  V  T  I  W  N  H  L  I  R  F  L  F  L  L  I  V  V  L  W  N  L  Y  S  S  E  N  F  Q   </second_frame>
            <third_frame>   A  E  V  Q  R  F  C  S  Q  V  G  V  K  R  Q  V  F  K  V  W  M  H  N  N  K  N  P  S  S  A  K  K  N  I  I  Q  E  D  Q  P  *  L  I  L  F  N  *  G  F  E  G  K  N  E  I  K  F  L  G  I  W  F  M  L  M  *  S  Y  *  E  S  Y  V  A  S  F  F  C  F  F  F  G  G  V  Y  V  V  L  L  *  L  Y  G  T  T  *  L  D  F  Y  F  Y  *  L  L  Y  F  G  T  F  I  H  L  K  I  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="41431" PGL_stop="40824"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41431" e_stop="40824"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="41431" e_stop="40824" e_length="608"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41431" stop="40824"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCAGGGGCAACGTGTGTGTTGACATCCCCGAGTACATTTGTCAATCGTCCTAGGATTTGGCTTGAATTGATATCAGAGTTCAAGGCAACTTGCACTCCTGTTCCTTCATTTGCTTTGCCTCTCGTGTTGAAACGTGGTCATACTGAGGCAACGGTTACAGGAACTGTTAGCAATCCTATTAGTATGTTGAGCTTGATGAATTTGATCATCGTTAACGAGCCAATTTACAATGATTCTATCGAAGAATTTGTTGAAGTTTTTAGGCCTTTTGGGCTAAATCCTTTGGCAATTTCTCCTTCATATGGCTTAGCTGAGAATGGCACATTTGTTTCAACATCATGGAGAAGTAGTAAGTTTAACAAATTTTCGACGTATAAAAAGCTCTTGCCAAGTGCTAGGCTTGATGAAGACCAAGTAGACATTGAAATTCTTGTTGTGAATGAAGATACAAATGAGATTGTTGAAGATGGAATTGAAGGTGAAATATGGATTTCATCTCCTAGCAATGCTATTGGATATTTAGCACATCCCTCTCTAACTCAACAAGTGTTCAACGCCACGCTTAAAAACAAGGCGGGAAAATGCTATGTTCGAACAGGGGATAGA</gDNA_template>
            <first_frame> F  Q  G  Q  R  V  C  *  H  P  R  V  H  L  S  I  V  L  G  F  G  L  N  *  Y  Q  S  S  R  Q  L  A  L  L  F  L  H  L  L  C  L  S  C  *  N  V  V  I  L  R  Q  R  L  Q  E  L  L  A  I  L  L  V  C  *  A  *  *  I  *  S  S  L  T  S  Q  F  T  M  I  L  S  K  N  L  L  K  F  L  G  L  L  G  *  I  L  W  Q  F  L  L  H  M  A  *  L  R  M  A  H  L  F  Q  H  H  G  E  V  V  S  L  T  N  F  R  R  I  K  S  S  C  Q  V  L  G  L  M  K  T  K  *  T  L  K  F  L  L  *  M  K  I  Q  M  R  L  L  K  M  E  L  K  V  K  Y  G  F  H  L  L  A  M  L  L  D  I  *  H  I  P  L  *  L  N  K  C  S  T  P  R  L  K  T  R  R  E  N  A  M  F  E  Q  G  I   </first_frame>
            <second_frame>  F  R  G  N  V  C  V  D  I  P  E  Y  I  C  Q  S  S  *  D  L  A  *  I  D  I  R  V  Q  G  N  L  H  S  C  S  F  I  C  F  A  S  R  V  E  T  W  S  Y  *  G  N  G  Y  R  N  C  *  Q  S  Y  *  Y  V  E  L  D  E  F  D  H  R  *  R  A  N  L  Q  *  F  Y  R  R  I  C  *  S  F  *  A  F  W  A  K  S  F  G  N  F  S  F  I  W  L  S  *  E  W  H  I  C  F  N  I  M  E  K  *  *  V  *  Q  I  F  D  V  *  K  A  L  A  K  C  *  A  *  *  R  P  S  R  H  *  N  S  C  C  E  *  R  Y  K  *  D  C  *  R  W  N  *  R  *  N  M  D  F  I  S  *  Q  C  Y  W  I  F  S  T  S  L  S  N  S  T  S  V  Q  R  H  A  *  K  Q  G  G  K  M  L  C  S  N  R  G  *  </second_frame>
            <third_frame>   S  G  A  T  C  V  L  T  S  P  S  T  F  V  N  R  P  R  I  W  L  E  L  I  S  E  F  K  A  T  C  T  P  V  P  S  F  A  L  P  L  V  L  K  R  G  H  T  E  A  T  V  T  G  T  V  S  N  P  I  S  M  L  S  L  M  N  L  I  I  V  N  E  P  I  Y  N  D  S  I  E  E  F  V  E  V  F  R  P  F  G  L  N  P  L  A  I  S  P  S  Y  G  L  A  E  N  G  T  F  V  S  T  S  W  R  S  S  K  F  N  K  F  S  T  Y  K  K  L  L  P  S  A  R  L  D  E  D  Q  V  D  I  E  I  L  V  V  N  E  D  T  N  E  I  V  E  D  G  I  E  G  E  I  W  I  S  S  P  S  N  A  I  G  Y  L  A  H  P  S  L  T  Q  Q  V  F  N  A  T  L  K  N  K  A  G  K  C  Y  V  R  T  G  D  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41429" stop="40824"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SGATCVLTSPSTFVNRPRIWLELISEFKATCTPVPSFALPLVLKRGHTEATVTGTVSNPISMLSLMNLIIVNEPIYNDSIEEFVEVFRPFGLNPLAISPSYGLAENGTFVSTSWRSSKFNKFSTYKKLLPSARLDEDQVDIEILVVNEDTNEIVEDGIEGEIWISSPSNAIGYLAHPSLTQQVFNATLKNKAGKCYVRTGDR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="45508" PGL_stop="43779"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45508" e_stop="45407"/>
            <exon e_start="44072" e_stop="43779"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.888" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45508" e_stop="45407" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.888">
            <gDNA_intron_boundary i_start="45406" i_stop="44073" i_length="1334"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44072" e_stop="43779" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45508" stop="45407"/>
              <exon start="44072" stop="43779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTAATGTTAGTTTACAGCAGCAGATATTGTCAATGCAGCAGCAGCAACAACAACAACATCAGCAGTTCTTGGATCCTATTAATGGGATTCTTAATGTTGG : GAGCTAAGTGATTTAAGGGTCTAAGGATGCGAACAACCAAGCTAAATAATTTAAGGGGCTAAGGATGCAAACCAAGCTTAAGTATGAATCTGGTGGAATTTAAGAGCTTGCTAATTGGAAAAGAGCGGGTCCAATGAAGACACACTAAGTTATGCCTTTCATATTCTCAACATGTACTGCACACGTTTATTCCATCTACGTTTATATTAAAATTTTGTGTATACACATTCTTGAAATAAAGGTTGAAAAATGAAACATAAAAGTATTGAAGTGAAAATCTTTCTTATTTGGTTC</gDNA_template>
            <first_frame> F  *  C  *  F  T  A  A  D  I  V  N  A  A  A  A  T  T  T  T  S  A  V  L  G  S  Y  *  W  D  S  *  C  W  :  E  L  S  D  L  R  V  *  G  C  E  Q  P  S  *  I  I  *  G  A  K  D  A  N  Q  A  *  V  *  I  W  W  N  L  R  A  C  *  L  E  K  S  G  S  N  E  D  T  L  S  Y  A  F  H  I  L  N  M  Y  C  T  R  L  F  H  L  R  L  Y  *  N  F  V  Y  T  H  S  *  N  K  G  *  K  M  K  H  K  S  I  E  V  K  I  F  L  I  W  F </first_frame>
            <second_frame>  S  N  V  S  L  Q  Q  Q  I  L  S  M  Q  Q  Q  Q  Q  Q  Q  H  Q  Q  F  L  D  P  I  N  G  I  L  N  V  G :   S  *  V  I  *  G  S  K  D  A  N  N  Q  A  K  *  F  K  G  L  R  M  Q  T  K  L  K  Y  E  S  G  G  I  *  E  L  A  N  W  K  R  A  G  P  M  K  T  H  *  V  M  P  F  I  F  S  T  C  T  A  H  V  Y  S  I  Y  V  Y  I  K  I  L  C  I  H  I  L  E  I  K  V  E  K  *  N  I  K  V  L  K  *  K  S  F  L  F  G   </second_frame>
            <third_frame>   L  M  L  V  Y  S  S  R  Y  C  Q  C  S  S  S  N  N  N  N  I  S  S  S  W  I  L  L  M  G  F  L  M  L   : G  A  K  *  F  K  G  L  R  M  R  T  T  K  L  N  N  L  R  G  *  G  C  K  P  S  L  S  M  N  L  V  E  F  K  S  L  L  I  G  K  E  R  V  Q  *  R  H  T  K  L  C  L  S  Y  S  Q  H  V  L  H  T  F  I  P  S  T  F  I  L  K  F  C  V  Y  T  F  L  K  *  R  L  K  N  E  T  *  K  Y  *  S  E  N  L  S  Y  L  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132M08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="53482" PGL_stop="59290"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53482" e_stop="53773"/>
            <exon e_start="54761" e_stop="54823"/>
            <exon e_start="54903" e_stop="54992"/>
            <exon e_start="55094" e_stop="55153"/>
            <exon e_start="55257" e_stop="55322"/>
            <exon e_start="55423" e_stop="55488"/>
            <exon e_start="55581" e_stop="55656"/>
            <exon e_start="56330" e_stop="56394"/>
            <exon e_start="56484" e_stop="56576"/>
            <exon e_start="56685" e_stop="56768"/>
            <exon e_start="56855" e_stop="56939"/>
            <exon e_start="57532" e_stop="57578"/>
            <exon e_start="57729" e_stop="57791"/>
            <exon e_start="57873" e_stop="57932"/>
            <exon e_start="58028" e_stop="58093"/>
            <exon e_start="58188" e_stop="58247"/>
            <exon e_start="58543" e_stop="58657"/>
            <exon e_start="58937" e_stop="59290"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.979" e_score="0.997"/>
          <exon-intron don_prob="0.991" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.825" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.773" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.739" acc_prob="0.961" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.784" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.025" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.722" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.512" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.506" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.511" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="53482" e_stop="53773" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.979">
            <gDNA_intron_boundary i_start="53774" i_stop="54760" i_length="987"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="54761" e_stop="54823" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.000">
            <gDNA_intron_boundary i_start="54824" i_stop="54902" i_length="79"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="54903" e_stop="54992" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="54993" i_stop="55093" i_length="101"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55094" e_stop="55153" e_length="60"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.825">
            <gDNA_intron_boundary i_start="55154" i_stop="55256" i_length="103"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="55257" e_stop="55322" e_length="66"/>
          </exon>
          <intron i_serial="5" don_prob="0.751" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55323" i_stop="55422" i_length="100"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="55423" e_stop="55488" e_length="66"/>
          </exon>
          <intron i_serial="6" don_prob="0.773" acc_prob="0.000">
            <gDNA_intron_boundary i_start="55489" i_stop="55580" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="55581" e_stop="55656" e_length="76"/>
          </exon>
          <intron i_serial="7" don_prob="0.739" acc_prob="0.961">
            <gDNA_intron_boundary i_start="55657" i_stop="56329" i_length="673"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="56330" e_stop="56394" e_length="65"/>
          </exon>
          <intron i_serial="8" don_prob="0.977" acc_prob="0.784">
            <gDNA_intron_boundary i_start="56395" i_stop="56483" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="56484" e_stop="56576" e_length="93"/>
          </exon>
          <intron i_serial="9" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="56577" i_stop="56684" i_length="108"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="56685" e_stop="56768" e_length="84"/>
          </exon>
          <intron i_serial="10" don_prob="0.025" acc_prob="0.990">
            <gDNA_intron_boundary i_start="56769" i_stop="56854" i_length="86"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="56855" e_stop="56939" e_length="85"/>
          </exon>
          <intron i_serial="11" don_prob="0.978" acc_prob="0.992">
            <gDNA_intron_boundary i_start="56940" i_stop="57531" i_length="592"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="57532" e_stop="57578" e_length="47"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57579" i_stop="57728" i_length="150"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="57729" e_stop="57791" e_length="63"/>
          </exon>
          <intron i_serial="13" don_prob="0.722" acc_prob="0.988">
            <gDNA_intron_boundary i_start="57792" i_stop="57872" i_length="81"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="57873" e_stop="57932" e_length="60"/>
          </exon>
          <intron i_serial="14" don_prob="0.512" acc_prob="0.974">
            <gDNA_intron_boundary i_start="57933" i_stop="58027" i_length="95"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="58028" e_stop="58093" e_length="66"/>
          </exon>
          <intron i_serial="15" don_prob="0.759" acc_prob="0.506">
            <gDNA_intron_boundary i_start="58094" i_stop="58187" i_length="94"/>
          </intron>
          <exon e_serial="16" e_score="1.000">
            <gDNA_exon_boundary e_start="58188" e_stop="58247" e_length="60"/>
          </exon>
          <intron i_serial="16" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58248" i_stop="58542" i_length="295"/>
          </intron>
          <exon e_serial="17" e_score="1.000">
            <gDNA_exon_boundary e_start="58543" e_stop="58657" e_length="115"/>
          </exon>
          <intron i_serial="17" don_prob="0.992" acc_prob="0.511">
            <gDNA_intron_boundary i_start="58658" i_stop="58936" i_length="279"/>
          </intron>
          <exon e_serial="18" e_score="0.997">
            <gDNA_exon_boundary e_start="58937" e_stop="59290" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53482" stop="53773"/>
              <exon start="54761" stop="54823"/>
              <exon start="54903" stop="54992"/>
              <exon start="55094" stop="55153"/>
              <exon start="55257" stop="55322"/>
              <exon start="55423" stop="55488"/>
              <exon start="55581" stop="55656"/>
              <exon start="56330" stop="56394"/>
              <exon start="56484" stop="56576"/>
              <exon start="56685" stop="56768"/>
              <exon start="56855" stop="56939"/>
              <exon start="57532" stop="57578"/>
              <exon start="57729" stop="57791"/>
              <exon start="57873" stop="57932"/>
              <exon start="58028" stop="58093"/>
              <exon start="58188" stop="58247"/>
              <exon start="58543" stop="58657"/>
              <exon start="58937" stop="59290"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCTAATTCCAGTATTTTCAACAACTTCATTTTTCTTGATCTGTAGTTCAAATTTCAAGAACTATAGAGAAAAGGGGTTGACTCAAAATTTGAAGAAAAAAAAATGAGTTTCAGAGAAGAGAACAATGAAGGGGATCTGAAAAAGCCATTTTTACATACTGGGAGTTGGTATCGTATGGGGTCAAGACAGTCTAGTATGATGGGTTCTTCTCAAGCTATTCGTGATAGTTCTATTTCTGTTCTTGCTTGTGTTCTCATAGTTGCTTTGGGCCCAATCCAGTTTGGTTTCACT : TGTGGCTACACTTCACCAACGCAAATTGCAATTACCAAAGATCTGAAGCTCACTGTTTCTGAG : TTCTCTTTGTTCGGTTCTTTATCCAATGTGGGTGCTATGGTTGGTGCAATATCTAGTGGTCAAATTTCTGAGTACATTGGGCGAAAAGGG : TCTTTAATGATAGCTGCTATACCAAATATCATTGGTTGGCTTGCCATCTCATTTGCCAAA : GATCCTTCTTTTCTATACATGGGAAGATTGTTGGAGGGCTTTGGTGTGGGAATAATCTCTTATGTG : GTTCCTGTATATATTGCTGAGATTGCACCTCAGAATATGAGAGGGGGTCTAGGGTCTGTTAACCAG : CTCTCTGTTACAATTGGGATCATGTTGTCCTATTTACTGGGACTTTTTGTTAATTGGAGGCTGCTTGCTGTTCTTG : GAGCATTACCTTGCCTAGCACTGATACCTGGACTATTTTTCATCCCCGAATCTCCTCGGTGGTTG : GCCAAAATGGGTTTAACAGAAGATTTTGAAACTTCGTTGCAAGTTCTTCGAGGCTTTGAGGCTGATATTACCAATGAAGTAAATGAAATTAAG : AGGTCTGTAGCATCATCAACAAACCGAAGAACAGCAATGCGTTTTGCGGATCTCAAACATAGAAGATATTGGTTTCCTCTCATG : GTAGGAATTGGACTACTTATCCTGCAACAGTTAGGAGGAATCAACGGTGTTATATTCTATTCCAGCAACATTTTCCTATCTGCCG : GTATTTCGTCAAGTAATGCTGCAACTTTTGGTGTCGGTGCTATACAG : GTTGTTGCAACTGCAGTTTCTACATGGCTGGTGGACAGAACTGGACGTAGAATTTTATTAATT : GTTTCCTCGGCTGGAATGGCTGTTAGTCTTCTTATTGTCTCCGTTGCCTTCTATCTAAAG : GGTTATGTATCTGAGGATTCTACCCTCTATGGTGTCTTGGGAATAGTGTCCGTAGTTGGGGTGGTG : TTCATGATTATTTCATTCTCGCTCGGAATGGGACCAATTCCATGGCTTATAATGTCTGAG : ATTCTTCCAATCAAGATCAAAGGTCTCGCTGGAAGTACGGCAACATTAGCCAACTGGTTATTCTCGTGGGTAATAACAGTGACTGCACCGTTGCTTATGGCTTGGAGCAGTGGAG : GAACCTTCACTATTTACATGGTTATGTGTGCTTTCACCGTGGCGTTCGTGGCAATTTGGGTACCGGAGACGAAAGGGAGAACTCTAGAGGAAATTCAGTTTTCTTTCAGATGAAAACTTACCCCCTCCCAAACAGGCCTTTGTGATCCTTTGTTCTTTTTGTCACAAAACTCAATTTCCCTTGTGCAAAAGTTTCAATTTTTCACATATATAGGGAAGAATGAGTTGCACATGCTGCTTCAGAGTGTGTACATTTCATCTTGATCTTGCCATTTGCTGTAATTTACTGTATGATTTTATTATTTTTGTATATTCTAAGTGTGATTATACCATTCAATTTAAAATAAAGTGCGAA</gDNA_template>
            <first_frame> C  *  F  Q  Y  F  Q  Q  L  H  F  S  *  S  V  V  Q  I  S  R  T  I  E  K  R  G  *  L  K  I  *  R  K  K  N  E  F  Q  R  R  E  Q  *  R  G  S  E  K  A  I  F  T  Y  W  E  L  V  S  Y  G  V  K  T  V  *  Y  D  G  F  F  S  S  Y  S  *  *  F  Y  F  C  S  C  L  C  S  H  S  C  F  G  P  N  P  V  W  F  H   : L  W  L  H  F  T  N  A  N  C  N  Y  Q  R  S  E  A  H  C  F  *   : V  L  F  V  R  F  F  I  Q  C  G  C  Y  G  W  C  N  I  *  W  S  N  F  *  V  H  W  A  K  R   : V  F  N  D  S  C  Y  T  K  Y  H  W  L  A  C  H  L  I  C  Q   : R  S  F  F  S  I  H  G  K  I  V  G  G  L  W  C  G  N  N  L  L  C   : G  S  C  I  Y  C  *  D  C  T  S  E  Y  E  R  G  S  R  V  C  *  P   : A  L  C  Y  N  W  D  H  V  V  L  F  T  G  T  F  C  *  L  E  A  A  C  C  S  W :   S  I  T  L  P  S  T  D  T  W  T  I  F  H  P  R  I  S  S  V  V   : G  Q  N  G  F  N  R  R  F  *  N  F  V  A  S  S  S  R  L  *  G  *  Y  Y  Q  *  S  K  *  N  *   : E  V  C  S  I  I  N  K  P  K  N  S  N  A  F  C  G  S  Q  T  *  K  I  L  V  S  S  H   : G  R  N  W  T  T  Y  P  A  T  V  R  R  N  Q  R  C  Y  I  L  F  Q  Q  H  F  P  I  C  R :   Y  F  V  K  *  C  C  N  F  W  C  R  C  Y  T   : G  C  C  N  C  S  F  Y  M  A  G  G  Q  N  W  T  *  N  F  I  N   : C  F  L  G  W  N  G  C  *  S  S  Y  C  L  R  C  L  L  S  K   : G  L  C  I  *  G  F  Y  P  L  W  C  L  G  N  S  V  R  S  W  G  G   : V  H  D  Y  F  I  L  A  R  N  G  T  N  S  M  A  Y  N  V  *   : D  S  S  N  Q  D  Q  R  S  R  W  K  Y  G  N  I  S  Q  L  V  I  L  V  G  N  N  S  D  C  T  V  A  Y  G  L  E  Q  W  R :   N  L  H  Y  L  H  G  Y  V  C  F  H  R  G  V  R  G  N  L  G  T  G  D  E  R  E  N  S  R  G  N  S  V  F  F  Q  M  K  T  Y  P  L  P  N  R  P  L  *  S  F  V  L  F  V  T  K  L  N  F  P  C  A  K  V  S  I  F  H  I  Y  R  E  E  *  V  A  H  A  A  S  E  C  V  H  F  I  L  I  L  P  F  A  V  I  Y  C  M  I  L  L  F  L  Y  I  L  S  V  I  I  P  F  N  L  K  *  S  A   </first_frame>
            <second_frame>  A  N  S  S  I  F  N  N  F  I  F  L  D  L  *  F  K  F  Q  E  L  *  R  K  G  V  D  S  K  F  E  E  K  K  M  S  F  R  E  E  N  N  E  G  D  L  K  K  P  F  L  H  T  G  S  W  Y  R  M  G  S  R  Q  S  S  M  M  G  S  S  Q  A  I  R  D  S  S  I  S  V  L  A  C  V  L  I  V  A  L  G  P  I  Q  F  G  F  T  :  C  G  Y  T  S  P  T  Q  I  A  I  T  K  D  L  K  L  T  V  S  E  :  F  S  L  F  G  S  L  S  N  V  G  A  M  V  G  A  I  S  S  G  Q  I  S  E  Y  I  G  R  K  G  :  S  L  M  I  A  A  I  P  N  I  I  G  W  L  A  I  S  F  A  K  :  D  P  S  F  L  Y  M  G  R  L  L  E  G  F  G  V  G  I  I  S  Y  V  :  V  P  V  Y  I  A  E  I  A  P  Q  N  M  R  G  G  L  G  S  V  N  Q  :  L  S  V  T  I  G  I  M  L  S  Y  L  L  G  L  F  V  N  W  R  L  L  A  V  L   : G  A  L  P  C  L  A  L  I  P  G  L  F  F  I  P  E  S  P  R  W  L  :  A  K  M  G  L  T  E  D  F  E  T  S  L  Q  V  L  R  G  F  E  A  D  I  T  N  E  V  N  E  I  K  :  R  S  V  A  S  S  T  N  R  R  T  A  M  R  F  A  D  L  K  H  R  R  Y  W  F  P  L  M  :  V  G  I  G  L  L  I  L  Q  Q  L  G  G  I  N  G  V  I  F  Y  S  S  N  I  F  L  S  A   : G  I  S  S  S  N  A  A  T  F  G  V  G  A  I  Q  :  V  V  A  T  A  V  S  T  W  L  V  D  R  T  G  R  R  I  L  L  I  :  V  S  S  A  G  M  A  V  S  L  L  I  V  S  V  A  F  Y  L  K  :  G  Y  V  S  E  D  S  T  L  Y  G  V  L  G  I  V  S  V  V  G  V  V  :  F  M  I  I  S  F  S  L  G  M  G  P  I  P  W  L  I  M  S  E  :  I  L  P  I  K  I  K  G  L  A  G  S  T  A  T  L  A  N  W  L  F  S  W  V  I  T  V  T  A  P  L  L  M  A  W  S  S  G   : G  T  F  T  I  Y  M  V  M  C  A  F  T  V  A  F  V  A  I  W  V  P  E  T  K  G  R  T  L  E  E  I  Q  F  S  F  R  *  K  L  T  P  S  Q  T  G  L  C  D  P  L  F  F  L  S  Q  N  S  I  S  L  V  Q  K  F  Q  F  F  T  Y  I  G  K  N  E  L  H  M  L  L  Q  S  V  Y  I  S  S  *  S  C  H  L  L  *  F  T  V  *  F  Y  Y  F  C  I  F  *  V  *  L  Y  H  S  I  *  N  K  V  R  </second_frame>
            <third_frame>   L  I  P  V  F  S  T  T  S  F  F  L  I  C  S  S  N  F  K  N  Y  R  E  K  G  L  T  Q  N  L  K  K  K  K  *  V  S  E  K  R  T  M  K  G  I  *  K  S  H  F  Y  I  L  G  V  G  I  V  W  G  Q  D  S  L  V  *  W  V  L  L  K  L  F  V  I  V  L  F  L  F  L  L  V  F  S  *  L  L  W  A  Q  S  S  L  V  S  L :   V  A  T  L  H  Q  R  K  L  Q  L  P  K  I  *  S  S  L  F  L  S :   S  L  C  S  V  L  Y  P  M  W  V  L  W  L  V  Q  Y  L  V  V  K  F  L  S  T  L  G  E  K  G :   L  *  *  *  L  L  Y  Q  I  S  L  V  G  L  P  S  H  L  P  K :   I  L  L  F  Y  T  W  E  D  C  W  R  A  L  V  W  E  *  S  L  M  W :   F  L  Y  I  L  L  R  L  H  L  R  I  *  E  G  V  *  G  L  L  T  S :   S  L  L  Q  L  G  S  C  C  P  I  Y  W  D  F  L  L  I  G  G  C  L  L  F  L  :  E  H  Y  L  A  *  H  *  Y  L  D  Y  F  S  S  P  N  L  L  G  G  W :   P  K  W  V  *  Q  K  I  L  K  L  R  C  K  F  F  E  A  L  R  L  I  L  P  M  K  *  M  K  L  R :   G  L  *  H  H  Q  Q  T  E  E  Q  Q  C  V  L  R  I  S  N  I  E  D  I  G  F  L  S  W :   *  E  L  D  Y  L  S  C  N  S  *  E  E  S  T  V  L  Y  S  I  P  A  T  F  S  Y  L  P  :  V  F  R  Q  V  M  L  Q  L  L  V  S  V  L  Y  R :   L  L  Q  L  Q  F  L  H  G  W  W  T  E  L  D  V  E  F  Y  *  L :   F  P  R  L  E  W  L  L  V  F  L  L  S  P  L  P  S  I  *  R :   V  M  Y  L  R  I  L  P  S  M  V  S  W  E  *  C  P  *  L  G  W  C :   S  *  L  F  H  S  R  S  E  W  D  Q  F  H  G  L  *  C  L  R :   F  F  Q  S  R  S  K  V  S  L  E  V  R  Q  H  *  P  T  G  Y  S  R  G  *  *  Q  *  L  H  R  C  L  W  L  G  A  V  E  :  E  P  S  L  F  T  W  L  C  V  L  S  P  W  R  S  W  Q  F  G  Y  R  R  R  K  G  E  L  *  R  K  F  S  F  L  S  D  E  N  L  P  P  P  K  Q  A  F  V  I  L  C  S  F  C  H  K  T  Q  F  P  L  C  K  S  F  N  F  S  H  I  *  G  R  M  S  C  T  C  C  F  R  V  C  T  F  H  L  D  L  A  I  C  C  N  L  L  Y  D  F  I  I  F  V  Y  S  K  C  D  Y  T  I  Q  F  K  I  K  C  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53549" stop="53773"/>
                    <exon start="54761" stop="54823"/>
                    <exon start="54903" stop="54992"/>
                    <exon start="55094" stop="55153"/>
                    <exon start="55257" stop="55322"/>
                    <exon start="55423" stop="55488"/>
                    <exon start="55581" stop="55656"/>
                    <exon start="56330" stop="56394"/>
                    <exon start="56484" stop="56576"/>
                    <exon start="56685" stop="56768"/>
                    <exon start="56855" stop="56939"/>
                    <exon start="57532" stop="57578"/>
                    <exon start="57729" stop="57791"/>
                    <exon start="57873" stop="57932"/>
                    <exon start="58028" stop="58093"/>
                    <exon start="58188" stop="58247"/>
                    <exon start="58543" stop="58657"/>
                    <exon start="58937" stop="59049"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGVDSKFEEKKMSFREENNEGDLKKPFLHTGSWYRMGSRQSSMMGSSQAIRDSSISVLACVLIVALGPIQFGFTCGYTSPTQIAITKDLKLTVSEFSLFGSLSNVGAMVGAISSGQISEYIGRKGSLMIAAIPNIIGWLAISFAKDPSFLYMGRLLEGFGVGIISYVVPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLSYLLGLFVNWRLLAVLGALPCLALIPGLFFIPESPRWLAKMGLTEDFETSLQVLRGFEADITNEVNEIKRSVASSTNRRTAMRFADLKHRRYWFPLMVGIGLLILQQLGGINGVIFYSSNIFLSAGISSSNAATFGVGAIQVVATAVSTWLVDRTGRRILLIVSSAGMAVSLLIVSVAFYLKGYVSEDSTLYGVLGIVSVVGVVFMIISFSLGMGPIPWLIMSEILPIKIKGLAGSTATLANWLFSWVITVTAPLLMAWSSGGTFTIYMVMCAFTVAFVAIWVPETKGRTLEEIQFSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="63333" PGL_stop="61339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63333" e_stop="61339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="63333" e_stop="61339" e_length="1995"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63333" stop="61339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320020" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTCAGTGGTAGTATAGTAGAGAGAAGAAGAAGAAGAGTGAGAGAGGTTTTAGAGCCTTTCAAACTCTTTGATTTCCCCAATTTATTCTCTCTCTTTTTCACCGCCGCCATGAACGGAGCCACCGGCACGCAAGTCAACACCGCGAACGGCGGTGGTGGTGAGCCAGTCGGAGTTCAGATCCAGCAGAGTAGGAGGTTGCCGGATTTCCTTCAGAGTGTAAACTTAAAGTACGTTAAACTAGGTTACCATTACTTGATCTCTCATTTGTTGACTCTATGTTTGATTCCTGTAATGGCTGTGATTTTAATTGAAGCTTCACAAATGAATCCTGATGATATTCGTCAATTATGGCTACATTTGCAGTATAATCTAGTCTCTGTTATTATTTGTTCCGCCGTTTTGGTTTTTGGATCCACAGTTTACATCATGACTCGGCCGAGGCCGGTTTATTTGATTGATTACTCTTGTTATAAAGCTCCTGAGCATCTCAAGGCTCCCTATGAACGGTTCATGCAGCATTCACGGCTCACAGGTGATTTTGATGAGTCGTCGCTTGAGTTTCAGAGGAAGATTCTGGAGCGTTCTGGCCTCGGGGACGAAACTTATGTTCCTGAGGCTATGCATCAGCTTCCTCCGCAGCCTTCTATGCAGGCTGCGAGGGAAGAAGCTGAGCAAGTTATGTTTGGTGCCTTGGATAAATTGTTTGCTAATACCTCTGTGAAACCTAAGAAAATAGGTGTGCTTGTTGTGAATTGTAGTTTGTTCAATCCGACTCCATCGCTTTCAGCTATGATTGTGAACAAGTATAAGTTGAGAGGTAATATAAGGAGTTTTAATCTGGGAGGTATGGGTTGTAGTGCTGGTGTAATTGCCGTTGATCTTGCTAAGGACATGTTGCAAGTGCACAGAAATACCTATGCTGTTGTTGTTAGTACTGAGAATATTACGCAGAACTGGTATTTTGGGAATAAGAAGTCCATGTTGATACCAAATTGTTTGTTTAGAGTCGGAGGTTCTGCTGTTCTGCTGTCTAACAAGTCCGTGGATAGAAGAAGGGCGAAATATAAGCTTGTTCATGTTGTTAGGACACATCGTGGGGCTGATGATAAGGCATTTCGTTGTGTTTACCAAGAACAGGATGATGCTGGGAAAACTGGGGTTTCTTTGTCAAAAGATCTCATGGCAATCGCTGGTGGAGCGCTTAAGACGAATATCACTACATTGGGTCCTCTTGTTCTACCCATCAGTGAGCAGCTTCTGTTCTTTGGTTCTCTGATAATTAAGAAAATATTCAATAAGCATATCAAGCCTTACATTCCAGATTTCAAGTTGGCCTTTGATCATTTCTGCATACACGCTGGTGGAAGGGCTGTTATTGACGAGCTGGAAAAGAATTTACAGCTGACACAGGTTCACGTTGAGGCATCTCGAATGACCCTGCACCGCTTTGGAAATACTTCATCCAGCTCTATCTGGTATGAATTGGCGTATATAGAGGCCAAAGGAAGAATGAAGAAAGGTAACAAAGTTTGGCAGATTGCATTTGGAAGTGGCTTTAAATGTAATAGTGCTGTTTGGCAGGCACTACGAAATGTAAAGCCTTCTCCCGATGGTCCCTGGGAGGATTGTATCGACAGGTATCCTGTAAAAGTAGTGTCATAACACTGTGGAGATCATGATTAGGCAAGTTAAGGGCTATCTGTAGCTGCTTCCGTGTACGTCATGGCACCTCTTCTCTTGAAGCCGAGTGATGCTCTACTTCTGTTCACGAGTCAAGTATCATTTTGTCCTTTTCTTAGTTTAGAGCCTTATGCTAATTTGTGTTGTACCATTTCAATCTATTACTTGTATGACTTCATATATGTAGCAATTCCTATTTTATTGTAGTTATTTTCCTGATAAACATCTATTCATGACTGAGCTTATGAGTAGTGGATTCAAGTTGCTAACACGCACTGTTATTTCTCACTGTTAGTGAAATGATTCCATTAATG</gDNA_template>
            <first_frame> L  Q  W  *  Y  S  R  E  K  K  K  K  S  E  R  G  F  R  A  F  Q  T  L  *  F  P  Q  F  I  L  S  L  F  H  R  R  H  E  R  S  H  R  H  A  S  Q  H  R  E  R  R  W  W  *  A  S  R  S  S  D  P  A  E  *  E  V  A  G  F  P  S  E  C  K  L  K  V  R  *  T  R  L  P  L  L  D  L  S  F  V  D  S  M  F  D  S  C  N  G  C  D  F  N  *  S  F  T  N  E  S  *  *  Y  S  S  I  M  A  T  F  A  V  *  S  S  L  C  Y  Y  L  F  R  R  F  G  F  W  I  H  S  L  H  H  D  S  A  E  A  G  L  F  D  *  L  L  L  L  *  S  S  *  A  S  Q  G  S  L  *  T  V  H  A  A  F  T  A  H  R  *  F  *  *  V  V  A  *  V  S  E  E  D  S  G  A  F  W  P  R  G  R  N  L  C  S  *  G  Y  A  S  A  S  S  A  A  F  Y  A  G  C  E  G  R  S  *  A  S  Y  V  W  C  L  G  *  I  V  C  *  Y  L  C  E  T  *  E  N  R  C  A  C  C  E  L  *  F  V  Q  S  D  S  I  A  F  S  Y  D  C  E  Q  V  *  V  E  R  *  Y  K  E  F  *  S  G  R  Y  G  L  *  C  W  C  N  C  R  *  S  C  *  G  H  V  A  S  A  Q  K  Y  L  C  C  C  C  *  Y  *  E  Y  Y  A  E  L  V  F  W  E  *  E  V  H  V  D  T  K  L  F  V  *  S  R  R  F  C  C  S  A  V  *  Q  V  R  G  *  K  K  G  E  I  *  A  C  S  C  C  *  D  T  S  W  G  *  *  *  G  I  S  L  C  L  P  R  T  G  *  C  W  E  N  W  G  F  F  V  K  R  S  H  G  N  R  W  W  S  A  *  D  E  Y  H  Y  I  G  S  S  C  S  T  H  Q  *  A  A  S  V  L  W  F  S  D  N  *  E  N  I  Q  *  A  Y  Q  A  L  H  S  R  F  Q  V  G  L  *  S  F  L  H  T  R  W  W  K  G  C  Y  *  R  A  G  K  E  F  T  A  D  T  G  S  R  *  G  I  S  N  D  P  A  P  L  W  K  Y  F  I  Q  L  Y  L  V  *  I  G  V  Y  R  G  Q  R  K  N  E  E  R  *  Q  S  L  A  D  C  I  W  K  W  L  *  M  *  *  C  C  L  A  G  T  T  K  C  K  A  F  S  R  W  S  L  G  G  L  Y  R  Q  V  S  C  K  S  S  V  I  T  L  W  R  S  *  L  G  K  L  R  A  I  C  S  C  F  R  V  R  H  G  T  S  S  L  E  A  E  *  C  S  T  S  V  H  E  S  S  I  I  L  S  F  S  *  F  R  A  L  C  *  F  V  L  Y  H  F  N  L  L  L  V  *  L  H  I  C  S  N  S  Y  F  I  V  V  I  F  L  I  N  I  Y  S  *  L  S  L  *  V  V  D  S  S  C  *  H  A  L  L  F  L  T  V  S  E  M  I  P  L  M </first_frame>
            <second_frame>  F  S  G  S  I  V  E  R  R  R  R  R  V  R  E  V  L  E  P  F  K  L  F  D  F  P  N  L  F  S  L  F  F  T  A  A  M  N  G  A  T  G  T  Q  V  N  T  A  N  G  G  G  G  E  P  V  G  V  Q  I  Q  Q  S  R  R  L  P  D  F  L  Q  S  V  N  L  K  Y  V  K  L  G  Y  H  Y  L  I  S  H  L  L  T  L  C  L  I  P  V  M  A  V  I  L  I  E  A  S  Q  M  N  P  D  D  I  R  Q  L  W  L  H  L  Q  Y  N  L  V  S  V  I  I  C  S  A  V  L  V  F  G  S  T  V  Y  I  M  T  R  P  R  P  V  Y  L  I  D  Y  S  C  Y  K  A  P  E  H  L  K  A  P  Y  E  R  F  M  Q  H  S  R  L  T  G  D  F  D  E  S  S  L  E  F  Q  R  K  I  L  E  R  S  G  L  G  D  E  T  Y  V  P  E  A  M  H  Q  L  P  P  Q  P  S  M  Q  A  A  R  E  E  A  E  Q  V  M  F  G  A  L  D  K  L  F  A  N  T  S  V  K  P  K  K  I  G  V  L  V  V  N  C  S  L  F  N  P  T  P  S  L  S  A  M  I  V  N  K  Y  K  L  R  G  N  I  R  S  F  N  L  G  G  M  G  C  S  A  G  V  I  A  V  D  L  A  K  D  M  L  Q  V  H  R  N  T  Y  A  V  V  V  S  T  E  N  I  T  Q  N  W  Y  F  G  N  K  K  S  M  L  I  P  N  C  L  F  R  V  G  G  S  A  V  L  L  S  N  K  S  V  D  R  R  R  A  K  Y  K  L  V  H  V  V  R  T  H  R  G  A  D  D  K  A  F  R  C  V  Y  Q  E  Q  D  D  A  G  K  T  G  V  S  L  S  K  D  L  M  A  I  A  G  G  A  L  K  T  N  I  T  T  L  G  P  L  V  L  P  I  S  E  Q  L  L  F  F  G  S  L  I  I  K  K  I  F  N  K  H  I  K  P  Y  I  P  D  F  K  L  A  F  D  H  F  C  I  H  A  G  G  R  A  V  I  D  E  L  E  K  N  L  Q  L  T  Q  V  H  V  E  A  S  R  M  T  L  H  R  F  G  N  T  S  S  S  S  I  W  Y  E  L  A  Y  I  E  A  K  G  R  M  K  K  G  N  K  V  W  Q  I  A  F  G  S  G  F  K  C  N  S  A  V  W  Q  A  L  R  N  V  K  P  S  P  D  G  P  W  E  D  C  I  D  R  Y  P  V  K  V  V  S  *  H  C  G  D  H  D  *  A  S  *  G  L  S  V  A  A  S  V  Y  V  M  A  P  L  L  L  K  P  S  D  A  L  L  L  F  T  S  Q  V  S  F  C  P  F  L  S  L  E  P  Y  A  N  L  C  C  T  I  S  I  Y  Y  L  Y  D  F  I  Y  V  A  I  P  I  L  L  *  L  F  S  *  *  T  S  I  H  D  *  A  Y  E  *  W  I  Q  V  A  N  T  H  C  Y  F  S  L  L  V  K  *  F  H  *   </second_frame>
            <third_frame>   S  V  V  V  *  *  R  E  E  E  E  E  *  E  R  F  *  S  L  S  N  S  L  I  S  P  I  Y  S  L  S  F  S  P  P  P  *  T  E  P  P  A  R  K  S  T  P  R  T  A  V  V  V  S  Q  S  E  F  R  S  S  R  V  G  G  C  R  I  S  F  R  V  *  T  *  S  T  L  N  *  V  T  I  T  *  S  L  I  C  *  L  Y  V  *  F  L  *  W  L  *  F  *  L  K  L  H  K  *  I  L  M  I  F  V  N  Y  G  Y  I  C  S  I  I  *  S  L  L  L  F  V  P  P  F  W  F  L  D  P  Q  F  T  S  *  L  G  R  G  R  F  I  *  L  I  T  L  V  I  K  L  L  S  I  S  R  L  P  M  N  G  S  C  S  I  H  G  S  Q  V  I  L  M  S  R  R  L  S  F  R  G  R  F  W  S  V  L  A  S  G  T  K  L  M  F  L  R  L  C  I  S  F  L  R  S  L  L  C  R  L  R  G  K  K  L  S  K  L  C  L  V  P  W  I  N  C  L  L  I  P  L  *  N  L  R  K  *  V  C  L  L  *  I  V  V  C  S  I  R  L  H  R  F  Q  L  *  L  *  T  S  I  S  *  E  V  I  *  G  V  L  I  W  E  V  W  V  V  V  L  V  *  L  P  L  I  L  L  R  T  C  C  K  C  T  E  I  P  M  L  L  L  L  V  L  R  I  L  R  R  T  G  I  L  G  I  R  S  P  C  *  Y  Q  I  V  C  L  E  S  E  V  L  L  F  C  C  L  T  S  P  W  I  E  E  G  R  N  I  S  L  F  M  L  L  G  H  I  V  G  L  M  I  R  H  F  V  V  F  T  K  N  R  M  M  L  G  K  L  G  F  L  C  Q  K  I  S  W  Q  S  L  V  E  R  L  R  R  I  S  L  H  W  V  L  L  F  Y  P  S  V  S  S  F  C  S  L  V  L  *  *  L  R  K  Y  S  I  S  I  S  S  L  T  F  Q  I  S  S  W  P  L  I  I  S  A  Y  T  L  V  E  G  L  L  L  T  S  W  K  R  I  Y  S  *  H  R  F  T  L  R  H  L  E  *  P  C  T  A  L  E  I  L  H  P  A  L  S  G  M  N  W  R  I  *  R  P  K  E  E  *  R  K  V  T  K  F  G  R  L  H  L  E  V  A  L  N  V  I  V  L  F  G  R  H  Y  E  M  *  S  L  L  P  M  V  P  G  R  I  V  S  T  G  I  L  *  K  *  C  H  N  T  V  E  I  M  I  R  Q  V  K  G  Y  L  *  L  L  P  C  T  S  W  H  L  F  S  *  S  R  V  M  L  Y  F  C  S  R  V  K  Y  H  F  V  L  F  L  V  *  S  L  M  L  I  C  V  V  P  F  Q  S  I  T  C  M  T  S  Y  M  *  Q  F  L  F  Y  C  S  Y  F  P  D  K  H  L  F  M  T  E  L  M  S  S  G  F  K  L  L  T  R  T  V  I  S  H  C  *  *  N  D  S  I  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63332" stop="61671"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1659</number_coding_nucleotides>
                  <number_encoded_amino_acids>553</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSGSIVERRRRRVREVLEPFKLFDFPNLFSLFFTAAMNGATGTQVNTANGGGGEPVGVQIQQSRRLPDFLQSVNLKYVKLGYHYLISHLLTLCLIPVMAVILIEASQMNPDDIRQLWLHLQYNLVSVIICSAVLVFGSTVYIMTRPRPVYLIDYSCYKAPEHLKAPYERFMQHSRLTGDFDESSLEFQRKILERSGLGDETYVPEAMHQLPPQPSMQAAREEAEQVMFGALDKLFANTSVKPKKIGVLVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSVDRRRAKYKLVHVVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFGSLIIKKIFNKHIKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLTQVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMKKGNKVWQIAFGSGFKCNSAVWQALRNVKPSPDGPWEDCIDRYPVKVVS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61640" stop="61446"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLSVAASVYVMAPLLLKPSDALLLFTSQVSFCPFLSLEPYANLCCTISIYYLYDFIYVAIPILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="69221" PGL_stop="67333"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69221" e_stop="68567"/>
            <exon e_start="67337" e_stop="67333"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.995" e_score="0.936"/>
          <exon-only e_score="0.800"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="69221" e_stop="68567" e_length="655"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="68566" i_stop="67338" i_length="1229"/>
          </intron>
          <exon e_serial="2" e_score="0.800">
            <gDNA_exon_boundary e_start="67337" e_stop="67333" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69221" stop="68567"/>
              <exon start="67337" stop="67333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332756" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCCACCCCAACCTCCATACCCATACACCATTGGTTATATTCTTCCCCCATCATTTTAATGATTTCAAAATTCTTAGTATCAATGGTTATCTTCTTCCCCCACCATTCTAATGATTTCAAAATTCTTAGCATTTTTGTTTCATTTATAAATTTTTCGAAGAGATTCTTTTCCCCATCTTTCTCTATCTAAAAAACGAGATGAAGTAAAAAATTATAATTAATAAAAAAGCTGATGAAAAAAAAAATTTGTCGAGTTAAAGATAACTGTACAGGGAAGGGGGGGTCGCCATTAATGGAGTTAGAGGAAATGTATGTTTTGTTCCAGTTGAAGGCAGGGAAGTGGGTGTTTAGGTTTTTCTCTCTCTTTTTTTCTTTTTTTTTTTACTTTAAAATAATTTTTATTTTTTTACTTAATAATATAATGTTTAAATAATTTTTTGGATTAAAAAATAACACATGTCATTATTTGATTGGTCAAATTGACATGTCAGCGCGAGTGTATTTCACACATTCTCTATTTTTTGTTTATTCTCGAAAAAATGTTCAAATGGTTCAAATTCAGAATGGTTGAAGTGTTCGATAGGTAGTACGTCTAGTTGAGGTGTCTAAATGAATAATCGGGACAAGTTTGAGTGGCCGCATATGACTTTGGCCTA : TTTTG</gDNA_template>
            <first_frame> P  T  P  T  S  I  P  I  H  H  W  L  Y  S  S  P  I  I  L  M  I  S  K  F  L  V  S  M  V  I  F  F  P  H  H  S  N  D  F  K  I  L  S  I  F  V  S  F  I  N  F  S  K  R  F  F  S  P  S  F  S  I  *  K  T  R  *  S  K  K  L  *  L  I  K  K  L  M  K  K  K  I  C  R  V  K  D  N  C  T  G  K  G  G  S  P  L  M  E  L  E  E  M  Y  V  L  F  Q  L  K  A  G  K  W  V  F  R  F  F  S  L  F  F  S  F  F  F  Y  F  K  I  I  F  I  F  L  L  N  N  I  M  F  K  *  F  F  G  L  K  N  N  T  C  H  Y  L  I  G  Q  I  D  M  S  A  R  V  Y  F  T  H  S  L  F  F  V  Y  S  R  K  N  V  Q  M  V  Q  I  Q  N  G  *  S  V  R  *  V  V  R  L  V  E  V  S  K  *  I  I  G  T  S  L  S  G  R  I  *  L  W  P   : I  L </first_frame>
            <second_frame>  P  P  Q  P  P  Y  P  Y  T  I  G  Y  I  L  P  P  S  F  *  *  F  Q  N  S  *  Y  Q  W  L  S  S  S  P  T  I  L  M  I  S  K  F  L  A  F  L  F  H  L  *  I  F  R  R  D  S  F  P  H  L  S  L  S  K  K  R  D  E  V  K  N  Y  N  *  *  K  S  *  *  K  K  K  F  V  E  L  K  I  T  V  Q  G  R  G  G  R  H  *  W  S  *  R  K  C  M  F  C  S  S  *  R  Q  G  S  G  C  L  G  F  S  L  S  F  F  L  F  F  F  T  L  K  *  F  L  F  F  Y  L  I  I  *  C  L  N  N  F  L  D  *  K  I  T  H  V  I  I  *  L  V  K  L  T  C  Q  R  E  C  I  S  H  I  L  Y  F  L  F  I  L  E  K  M  F  K  W  F  K  F  R  M  V  E  V  F  D  R  *  Y  V  *  L  R  C  L  N  E  *  S  G  Q  V  *  V  A  A  Y  D  F  G  L  :  F   </second_frame>
            <third_frame>   H  P  N  L  H  T  H  T  P  L  V  I  F  F  P  H  H  F  N  D  F  K  I  L  S  I  N  G  Y  L  L  P  P  P  F  *  *  F  Q  N  S  *  H  F  C  F  I  Y  K  F  F  E  E  I  L  F  P  I  F  L  Y  L  K  N  E  M  K  *  K  I  I  I  N  K  K  A  D  E  K  K  N  L  S  S  *  R  *  L  Y  R  E  G  G  V  A  I  N  G  V  R  G  N  V  C  F  V  P  V  E  G  R  E  V  G  V  *  V  F  L  S  L  F  F  F  F  F  L  L  *  N  N  F  Y  F  F  T  *  *  Y  N  V  *  I  I  F  W  I  K  K  *  H  M  S  L  F  D  W  S  N  *  H  V  S  A  S  V  F  H  T  F  S  I  F  C  L  F  S  K  K  C  S  N  G  S  N  S  E  W  L  K  C  S  I  G  S  T  S  S  *  G  V  *  M  N  N  R  D  K  F  E  W  P  H  M  T  L  A  Y :   F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69005" stop="68790"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKKLMKKKICRVKDNCTGKGGSPLMELEEMYVLFQLKAGKWVFRFFSLFFSFFFYFKIIFIFLLNNIMFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="69494" PGL_stop="74080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69494" e_stop="69631"/>
            <exon e_start="69741" e_stop="69812"/>
            <exon e_start="70557" e_stop="70631"/>
            <exon e_start="71831" e_stop="71911"/>
            <exon e_start="72578" e_stop="72647"/>
            <exon e_start="72723" e_stop="72814"/>
            <exon e_start="73517" e_stop="73558"/>
            <exon e_start="73650" e_stop="73730"/>
            <exon e_start="73909" e_stop="74080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.573" e_score="0.971"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.738" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.625" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.987" e_score="0.989"/>
          <exon-intron don_prob="0.959" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.947" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.971">
            <gDNA_exon_boundary e_start="69494" e_stop="69631" e_length="138"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.573">
            <gDNA_intron_boundary i_start="69632" i_stop="69740" i_length="109"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69741" e_stop="69812" e_length="72"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="69813" i_stop="70556" i_length="744"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="70557" e_stop="70631" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.738">
            <gDNA_intron_boundary i_start="70632" i_stop="71830" i_length="1199"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="71831" e_stop="71911" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="0.984" acc_prob="0.625">
            <gDNA_intron_boundary i_start="71912" i_stop="72577" i_length="666"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="72578" e_stop="72647" e_length="70"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72648" i_stop="72722" i_length="75"/>
          </intron>
          <exon e_serial="6" e_score="0.989">
            <gDNA_exon_boundary e_start="72723" e_stop="72814" e_length="92"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.987">
            <gDNA_intron_boundary i_start="72815" i_stop="73516" i_length="702"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73517" e_stop="73558" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.959" acc_prob="0.999">
            <gDNA_intron_boundary i_start="73559" i_stop="73649" i_length="91"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="73650" e_stop="73730" e_length="81"/>
          </exon>
          <intron i_serial="8" don_prob="0.929" acc_prob="0.947">
            <gDNA_intron_boundary i_start="73731" i_stop="73908" i_length="178"/>
          </intron>
          <exon e_serial="9" e_score="0.988">
            <gDNA_exon_boundary e_start="73909" e_stop="74080" e_length="172"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69494" stop="69631"/>
              <exon start="69741" stop="69812"/>
              <exon start="70557" stop="70631"/>
              <exon start="71831" stop="71911"/>
              <exon start="72578" stop="72647"/>
              <exon start="72723" stop="72814"/>
              <exon start="73517" stop="73558"/>
              <exon start="73650" stop="73730"/>
              <exon start="73909" stop="74080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331707" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGTAAAAAACGGGTCGGGGCAATTGACCCATTTCAAATAGTAACATTTCCTTGTGTAAAATTCTCTCCAATCGGACTGCGGCGTTAATCCGTTCACTCTCCGGCGAAAAAATGGAAGCCAATGCTCCTCAGTTTAAG : CTAATTTTGGGTTCATCCTCTACTGCTCGGAAAAAGATTTTAGGCGACATGGGATACGAGTTCACAACCATG : TCTGCAGATATTGATGAGAAAGCTATCCGGAAAGAAAAGCCTGAAGATTTAGTTATGGCTCTTGCTGAGGCAAAG : GCAGAAGCCATCATACCAAGGGTTTCAATTGGAGAATCCGAAGGGGATGCCGAGCCAACACTTCTAATTACGTGTGATCAA : GTGGTGGTCTATGAAGGTGTGATCAGGGAAAAACCATCCAGTGAAGCAGAAGCACGTCAGTTCATGAAAG : ATTACGCCAATGGACATGCAGCAACCGTGAGTTCTGTTCTTGTCACGAACCTGACAACAGGAAGCAGAAGAGGAGAGTGGGACAAAGTCGAG : ATTTATTTCCACGACATACCAGATCAAGTCATAGATAAACTG : ATTGAGGAAGGGATAGTTCTTTATGCAGCTGGTGGCTTGATAATTGAACATCCTCTCGTTTTGCCTTATATTAAGGAAGTG : GTTGGCTCGACTGATAGCGTGATGGGTCTCCCAAAAGCTCTCACCGAAAGACTTATAAAGGAGGTTCTTTAGTATGACTATGATCCTGCTCCTACCTGAATGAGTTCGCGATCTATAATTTTGATATACGCTATTGGAGCTGAAATTATCATTGATTGTTCGCACTGGATGT</gDNA_template>
            <first_frame> S  *  K  T  G  R  G  N  *  P  I  S  N  S  N  I  S  L  C  K  I  L  S  N  R  T  A  A  L  I  R  S  L  S  G  E  K  M  E  A  N  A  P  Q  F  K  :  L  I  L  G  S  S  S  T  A  R  K  K  I  L  G  D  M  G  Y  E  F  T  T  M  :  S  A  D  I  D  E  K  A  I  R  K  E  K  P  E  D  L  V  M  A  L  A  E  A  K  :  A  E  A  I  I  P  R  V  S  I  G  E  S  E  G  D  A  E  P  T  L  L  I  T  C  D  Q  :  V  V  V  Y  E  G  V  I  R  E  K  P  S  S  E  A  E  A  R  Q  F  M  K   : D  Y  A  N  G  H  A  A  T  V  S  S  V  L  V  T  N  L  T  T  G  S  R  R  G  E  W  D  K  V  E  :  I  Y  F  H  D  I  P  D  Q  V  I  D  K  L  :  I  E  E  G  I  V  L  Y  A  A  G  G  L  I  I  E  H  P  L  V  L  P  Y  I  K  E  V  :  V  G  S  T  D  S  V  M  G  L  P  K  A  L  T  E  R  L  I  K  E  V  L  *  Y  D  Y  D  P  A  P  T  *  M  S  S  R  S  I  I  L  I  Y  A  I  G  A  E  I  I  I  D  C  S  H  W  M  </first_frame>
            <second_frame>  R  K  K  R  V  G  A  I  D  P  F  Q  I  V  T  F  P  C  V  K  F  S  P  I  G  L  R  R  *  S  V  H  S  P  A  K  K  W  K  P  M  L  L  S  L  S :   *  F  W  V  H  P  L  L  L  G  K  R  F  *  A  T  W  D  T  S  S  Q  P  C :   L  Q  I  L  M  R  K  L  S  G  K  K  S  L  K  I  *  L  W  L  L  L  R  Q  R :   Q  K  P  S  Y  Q  G  F  Q  L  E  N  P  K  G  M  P  S  Q  H  F  *  L  R  V  I  K :   W  W  S  M  K  V  *  S  G  K  N  H  P  V  K  Q  K  H  V  S  S  *  K  :  I  T  P  M  D  M  Q  Q  P  *  V  L  F  L  S  R  T  *  Q  Q  E  A  E  E  E  S  G  T  K  S  R :   F  I  S  T  T  Y  Q  I  K  S  *  I  N  * :   L  R  K  G  *  F  F  M  Q  L  V  A  *  *  L  N  I  L  S  F  C  L  I  L  R  K  W :   L  A  R  L  I  A  *  W  V  S  Q  K  L  S  P  K  D  L  *  R  R  F  F  S  M  T  M  I  L  L  L  P  E  *  V  R  D  L  *  F  *  Y  T  L  L  E  L  K  L  S  L  I  V  R  T  G  C </second_frame>
            <third_frame>   V  K  N  G  S  G  Q  L  T  H  F  K  *  *  H  F  L  V  *  N  S  L  Q  S  D  C  G  V  N  P  F  T  L  R  R  K  N  G  S  Q  C  S  S  V  *   : A  N  F  G  F  I  L  Y  C  S  E  K  D  F  R  R  H  G  I  R  V  H  N  H   : V  C  R  Y  *  *  E  S  Y  P  E  R  K  A  *  R  F  S  Y  G  S  C  *  G  K   : G  R  S  H  H  T  K  G  F  N  W  R  I  R  R  G  C  R  A  N  T  S  N  Y  V  *  S   : S  G  G  L  *  R  C  D  Q  G  K  T  I  Q  *  S  R  S  T  S  V  H  E  R :   L  R  Q  W  T  C  S  N  R  E  F  C  S  C  H  E  P  D  N  R  K  Q  K  R  R  V  G  Q  S  R   : D  L  F  P  R  H  T  R  S  S  H  R  *  T   : D  *  G  R  D  S  S  L  C  S  W  W  L  D  N  *  T  S  S  R  F  A  L  Y  *  G  S   : G  W  L  D  *  *  R  D  G  S  P  K  S  S  H  R  K  T  Y  K  G  G  S  L  V  *  L  *  S  C  S  Y  L  N  E  F  A  I  Y  N  F  D  I  R  Y  W  S  *  N  Y  H  *  L  F  A  L  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69521" stop="69631"/>
                    <exon start="69741" stop="69812"/>
                    <exon start="70557" stop="70631"/>
                    <exon start="71831" stop="71911"/>
                    <exon start="72578" stop="72647"/>
                    <exon start="72723" stop="72814"/>
                    <exon start="73517" stop="73558"/>
                    <exon start="73650" stop="73730"/>
                    <exon start="73909" stop="73980"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>693</number_coding_nucleotides>
                  <number_encoded_amino_acids>231</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PISNSNISLCKILSNRTAALIRSLSGEKMEANAPQFKLILGSSSTARKKILGDMGYEFTTMSADIDEKAIRKEKPEDLVMALAEAKAEAIIPRVSIGESEGDAEPTLLITCDQVVVYEGVIREKPSSEAEARQFMKDYANGHAATVSSVLVTNLTTGSRRGEWDKVEIYFHDIPDQVIDKLIEEGIVLYAAGGLIIEHPLVLPYIKEVVGSTDSVMGLPKALTERLIKEVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="81321" PGL_stop="79647"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81321" e_stop="81255"/>
            <exon e_start="80713" e_stop="80656"/>
            <exon e_start="80457" e_stop="80398"/>
            <exon e_start="80105" e_stop="80043"/>
            <exon e_start="79972" e_stop="79647"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.746" acc_prob="0.772" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="81321" e_stop="81255" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="81254" i_stop="80714" i_length="541"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80713" e_stop="80656" e_length="58"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.980">
            <gDNA_intron_boundary i_start="80655" i_stop="80458" i_length="198"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80457" e_stop="80398" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.746" acc_prob="0.772">
            <gDNA_intron_boundary i_start="80397" i_stop="80106" i_length="292"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80105" e_stop="80043" e_length="63"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="80042" i_stop="79973" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="79972" e_stop="79647" e_length="326"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81321" stop="81255"/>
              <exon start="80713" stop="80656"/>
              <exon start="80457" stop="80398"/>
              <exon start="80105" stop="80043"/>
              <exon start="79972" stop="79647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCAGTTATTGAGAATTCAGCGTGATCACATTGAAGATGAAATACACCATCTTAAGTGGTCTCTCAA : GTCTGAAGAAACTGATGATGCCAGCAAGGAGATGTTTTCGGAGCTTCACAAGCTGCAG : TCCAAAGGTGAGGAGGTCAGGCTCAGTCATCAGCAGGCACAACGAGAATGTCACCAAAAG : TTCCACAAGGTCTGGGGACAACTAATGAAGACTGGTTATCAGAATTCTCGTTTTGCACATCAG : GTGGAAAGATTTGCTTGCCTTTATACCAGTCAAGTCACAAACTTGAGCCTGTATTCCCCGGATAAGTACTATAGGCCTAGTGAGGATTTTATGCCTCATGAATTTGGTATCCTCTCTATTTGAGGGGATCTTGTAATCCAGGGGCCAAAGGCAGTGCATTTTGAAGAAGAGCTTTGCTCATTCTAATTTACATTCCGAGTTACCAACATGGAAAATCTTTATGTTTTGTGGTATAATAACTTAAATTGTATCATATTTGTTTGTGCTGTCTCATATATGCACTTATCTGATTGTGAATTTGAATTATATAAAACAACTAGAATGGT</gDNA_template>
            <first_frame> F  S  Y  *  E  F  S  V  I  T  L  K  M  K  Y  T  I  L  S  G  L  S   : S  L  K  K  L  M  M  P  A  R  R  C  F  R  S  F  T  S  C  S :   P  K  V  R  R  S  G  S  V  I  S  R  H  N  E  N  V  T  K  S :   S  T  R  S  G  D  N  *  *  R  L  V  I  R  I  L  V  L  H  I  R :   W  K  D  L  L  A  F  I  P  V  K  S  Q  T  *  A  C  I  P  R  I  S  T  I  G  L  V  R  I  L  C  L  M  N  L  V  S  S  L  F  E  G  I  L  *  S  R  G  Q  R  Q  C  I  L  K  K  S  F  A  H  S  N  L  H  S  E  L  P  T  W  K  I  F  M  F  C  G  I  I  T  *  I  V  S  Y  L  F  V  L  S  H  I  C  T  Y  L  I  V  N  L  N  Y  I  K  Q  L  E  W  </first_frame>
            <second_frame>  S  V  I  E  N  S  A  *  S  H  *  R  *  N  T  P  S  *  V  V  S  Q  :  V  *  R  N  *  *  C  Q  Q  G  D  V  F  G  A  S  Q  A  A   : V  Q  R  *  G  G  Q  A  Q  S  S  A  G  T  T  R  M  S  P  K   : V  P  Q  G  L  G  T  T  N  E  D  W  L  S  E  F  S  F  C  T  S   : G  G  K  I  C  L  P  L  Y  Q  S  S  H  K  L  E  P  V  F  P  G  *  V  L  *  A  *  *  G  F  Y  A  S  *  I  W  Y  P  L  Y  L  R  G  S  C  N  P  G  A  K  G  S  A  F  *  R  R  A  L  L  I  L  I  Y  I  P  S  Y  Q  H  G  K  S  L  C  F  V  V  *  *  L  K  L  Y  H  I  C  L  C  C  L  I  Y  A  L  I  *  L  *  I  *  I  I  *  N  N  *  N  G </second_frame>
            <third_frame>   Q  L  L  R  I  Q  R  D  H  I  E  D  E  I  H  H  L  K  W  S  L  K :   S  E  E  T  D  D  A  S  K  E  M  F  S  E  L  H  K  L  Q  :  S  K  G  E  E  V  R  L  S  H  Q  Q  A  Q  R  E  C  H  Q  K  :  F  H  K  V  W  G  Q  L  M  K  T  G  Y  Q  N  S  R  F  A  H  Q  :  V  E  R  F  A  C  L  Y  T  S  Q  V  T  N  L  S  L  Y  S  P  D  K  Y  Y  R  P  S  E  D  F  M  P  H  E  F  G  I  L  S  I  *  G  D  L  V  I  Q  G  P  K  A  V  H  F  E  E  E  L  C  S  F  *  F  T  F  R  V  T  N  M  E  N  L  Y  V  L  W  Y  N  N  L  N  C  I  I  F  V  C  A  V  S  Y  M  H  L  S  D  C  E  F  E  L  Y  K  T  T  R  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132M08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81319" stop="81255"/>
                    <exon start="80713" stop="80656"/>
                    <exon start="80457" stop="80398"/>
                    <exon start="80105" stop="80043"/>
                    <exon start="79972" stop="79850"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLLRIQRDHIEDEIHHLKWSLKSEETDDASKEMFSELHKLQSKGEEVRLSHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFGILSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 18 chains have been computed
$ 
$ memory statistics:
$ 26528 bytes spliced alignments in total
$ 14 spliced alignments have been stored
$ 1894 bytes was the average size of a spliced alignment
$ 20880 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1606 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 20 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 14:30:10
-->
