<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:24:16"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610765" ref_strand="+" ref_description="SGN-E610765 [57933]">
      <seq>atttagtggacaagatgggaataaaggaacaaaagatgctttgacgataaatcaagtcatatccagaagatgaaattgaagtgtttggtacttttgcatttttggtgtaaaggaacatgtgtagaagatcttgattcaatttttgatgttttaaactccttctagatgatagtggagctgtaggtttggtctctttgcagtcctgtaattatggatgattatacagtctttgtataatcttactatttgtacaagatatgttagctgttttaaaataaataaattatgagtaccatattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="13144" stop="12244"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12844" g_stop="12544" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E610765" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E610765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12844" e_stop="12544"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGTGGACAATATGGGAAGAAAGGAACAAAAGATGCTTTGAAGATAAATCAAGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTGTATTTTTGGTGTAAAGGAACATGTGTAGAAGATCTTGATTCAGTTTTTGATATTTTAAACTCCTTCTATATGATAGTGGAGCTGTAGGTTTGGTCTCTGTACAGTCCTGTAATTATGGATGATTGTACAGTCTTTGTATAATCTTATTATTTATATAAGATATGTTAGCTGTTTTAAAGTAAATAAATTATGAGTACCATATTCT</genome_strand>
        <mrna_strand>ATTTAGTGGACAAGATGGGAATAAAGGAACAAAAGATGCTTTGACGATAAATCAAGTCATATCCAGAAGATGAAATTGAAGTGTTTGGTACTTTTGCATTTTTGGTGTAAAGGAACATGTGTAGAAGATCTTGATTCAATTTTTGATGTTTTAAACTCCTTCTAGATGATAGTGGAGCTGTAGGTTTGGTCTCTTTGCAGTCCTGTAATTATGGATGATTATACAGTCTTTGTATAATCTTACTATTTGTACAAGATATGTTAGCTGTTTTAAAATAAATAAATTATGAGTACCATATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329013" ref_strand="+" ref_description="SGN-E329013 [cTOC-24-A4]">
      <seq>ttttgtcagtcaaatgcactctttcagaatacaaccatgacgttaacaggcccgtcgggtaaatcatgtcctgtgagtctgagaatttgcaatggtgggaagactctatatgcttgtattaccagaggctggcatgatttcttttcaagcaacaagctaaaagtaggcgatgtttgcctcttccaacttgatcgctcaaaaagcgactcaaattccattgccatcgatgttcgtgttttgtaggctgcagacttttcttttatctttattcttttgatttttactagttagtgttaccttgtaaacttatttcattaggtataggttctttttaaattgacttgattggctgatcaacaacaagtagtactctagctgctgcagagtaattaggcagtgttatatgttgagaagcaaaaatgctgatgaataagttgcatcaagaaaataatcttagaggtaactcaagccagaaggagagatcgaaggtcattccaacgtctatttagtggacaatatgggaagaaagggacaaaagatgctttgaaagataatcagtcatatccagaagatgaagttgaagtgtttggtacttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="13647" stop="12449"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13347" g_stop="12749" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E329013" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13347" e_stop="12749"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGCAGAGTAATTAGGCAGTGTTATATGTTGAGAAGCAAAAATGCTGATGAATAAGTTGCATCAAGAAAATAATCTTAGAGGTAACTCAAGCCAGAAGGAGAGATCGAAGATCATTCCAACGTCTATTTAGTGGACAATATGGGAAGAAAGGAACAAAAGATGCTTTGAAGATAAATCAAGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTG</genome_strand>
        <mrna_strand>TTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGCAGAGTAATTAGGCAGTGTTATATGTTGAGAAGCAAAAATGCTGATGAATAAGTTGCATCAAGAAAATAATCTTAGAGGTAACTCAAGCCAGAAGGAGAGATCGAAGGTCATTCCAACGTCTATTTAGTGGACAATATGGGAAGAAAGGGACAAAAGATGCTTTGAAAGATAATC-AGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317332" ref_strand="+" ref_description="SGN-E317332 [cTOA-28-C17]">
      <seq>gctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttcacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagagttttgtcagtcaaatgcactctttcagaatacaaccatgacgttaacaggcccgtcgggtaaatcatgtcctgtgagtctgagaatttgcaatggtgggaagactctatatgcttgtattaccagaggctggcatgatttcttttcaagcaacaagctaaaagtaggcgatgtttgcctcttccaacttgatcgctcaaaaagcgactcaaattccattgccatcgatgttcgtgttttgtaggctgcagacttttcttttatctttattcttttgatttttactagttagtgttaccttgtnaacttatttcattangtataggttctttttaaattgacttgattggctgatcaacaacaagtagtactctagctgctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="14762" stop="12666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14462" g_stop="14167" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="406" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13362" g_stop="12966" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="803" r_length="397" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E317332" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14462" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="12966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGC</genome_strand>
        <mrna_strand>GCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTNAACTTATTTCATTANGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E317333" ref_strand="+" ref_description="SGN-E317333 [cTOA-28-C19]">
      <seq>gctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttcacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagagttttgtcagtcaaatgcactctttcagaatacaaccatgacgttaacagggcccgtcggtaaatcatgtcctgtgagtctgagaatttgcatggtgggaagactctatatgcttgtatttaccagagctggcatgatttctttttcagcaacaagctaaaagtaggcgatngtttgcctcttccacttgatcgctcaaaagcgactcaaattccttgccatcgatgttcgtgttttgtaggctgcagacttttcttttatctttattcttttgatttttactagttagtggtaccttgtaaacttatttcattangtataggttcttttttaattgacttgattggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="14762" stop="12694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14462" g_stop="14167" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="296" r_length="296" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="406" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13362" g_stop="12994" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="772" r_length="366" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E317333" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317333" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14462" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="12994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACA-GGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTA-TTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGAT-GTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGAT</genome_strand>
        <mrna_strand>GCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGGCCCGTC-GGTAAATCATGTCCTGTGAGTCTGAGAATTTGC-ATGGTGGGAAGACTCTATATGCTTGTATTTACCAGA-GCTGGCATGATTTCTTTTTCAGCAACAAGCTAAAAGTAGGCGATNGTTTGCCTCTTCC-ACTTGATCGCTC-AAAAGCGACTCAAATTCC-TTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGGTACCTTGTAAACTTATTTCATTANGTATAGGTTCTTTTTTAATTGACTTGATTGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E429487" ref_strand="+" ref_description="SGN-E429487 [STM-52-K17]">
      <seq>atttaacaatgcaatcttcttcgccggaacttccgattagcagacgtttcttcaaggtcatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataaatcagaaaaggggacaataataaagggcaaggatacatggaatgttgaaattaatcgatccgagaagggcattatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtaatatgagtttcagtgttacccttcttgattcaactggctgtgataagaagttgctggaaaagagcgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctggtcagtccggaatagagaaaaggaaacttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagtttacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagaattttgtcagtcgaatgcactctttcagaatacaaccatgacgttaacaggcccgtcgggtaaatcatgtcctgtgagtctgagaatttgcaatggtgggaagactctatatgcttgcattacaagaagctggcatgatttcttttcaagcacaagctaaaagtangagatgtttgcatcttccaacttgatcgctcaaaagcgactcaaattcattgccatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15027" stop="12822"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14727" g_stop="14642" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="408" r_length="322" r_score="0.963"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="518" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13362" g_stop="13122" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="756" r_length="238" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E429487" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429487" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14727" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="13122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCG</genome_strand>
        <mrna_strand>ATTTAACAATGCAATCTTCTTCGCCGGAACTTCCGATTAGCAGACGTTTCTTCAAGGTCATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAAATCAGAAAAGGGGACAATAATAAAGGGCAAGGATACATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTAATATGAGTTTCAGTGTTACCCTTCTTGATTCAACTGGCTGTGATAAGAAGTTGCTGGAAAAGAGCGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGGTCAGTCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAACTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTTACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAATTTTGTCAGTCGAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGCATTACAAGAAGCTGGCATGATTTCTTTTCAAGC-ACAAGCTAAAAGTANGAGATGTTTGCATCTTCCAACTTGATCGCTC-AAAAGCGACTCAAATT-CATTGCCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E457370" ref_strand="+" ref_description="SGN-E457370 [cPRO-2-D17]">
      <seq>atttaacaatgcaatcttcttcgccggaacttccgattagcagacgtttcttcaaggtcatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataaatcagaaaaggggacaataataaagggcaaggatacatggaatgttgaaattaatcgatccgagaaaggcattatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtaatatgagtttcagtgttacccttcttgattcaactggctgtgataagaagttgctggaaaagagcgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctggtcagtccggaatagagaaaaggaaacttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagtttacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagaattttgtcagtcgaatgcactctttcagaatacaaccatgacgttaacaggcccgtcgggtaaatcatgtcctgtgagtctgagaatttgcaatggtgggaagactctatatgcttgcattacaagaagctggcatgatttcttttcaagcacaagctaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15027" stop="12887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14727" g_stop="14642" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="408" r_length="322" r_score="0.960"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="518" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.921" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13362" g_stop="13186" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="694" r_length="176" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E457370" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E457370" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14727" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="13186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAA</genome_strand>
        <mrna_strand>ATTTAACAATGCAATCTTCTTCGCCGGAACTTCCGATTAGCAGACGTTTCTTCAAGGTCATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAAATCAGAAAAGGGGACAATAATAAAGGGCAAGGATACATGGAATGTTGAAATTAATCGATCCGAGAAAGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTAATATGAGTTTCAGTGTTACCCTTCTTGATTCAACTGGCTGTGATAAGAAGTTGCTGGAAAAGAGCGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGGTCAGTCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAACTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTTACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAATTTTGTCAGTCGAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGCATTACAAGAAGCTGGCATGATTTCTTTTCAAGC-ACAAGCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E255239" ref_strand="+" ref_description="SGN-E255239 [cLEG-31-P1]">
      <seq>tgctccgacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttcacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagagttttgtcagtcaaatgcactctttcagaatacaaccatgacgttaacaggcccgtcgggtaaatcatgtcctgtgagtctgagaatttgcaatggtgggaagactctatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15038" stop="12935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14738" g_stop="14642" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="419" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="529" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13362" g_stop="13235" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="657" r_length="128" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E255239" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>657</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14738" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="13235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGC</genome_strand>
        <mrna_strand>TGCTCCGACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E274607" ref_strand="+" ref_description="SGN-E274607 [cLEN-11-F17]">
      <seq>gacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttcacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagagttttgtcagtcaaatgcactctttcagaatacaaccatgacgttaacaggcccgtcgggtaaatcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15032" stop="12980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14732" g_stop="14642" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="413" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="523" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13362" g_stop="13280" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="606" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E274607" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14732" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="13280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATG</genome_strand>
        <mrna_strand>GACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259216" ref_strand="+" ref_description="SGN-E259216 [cLEG-43-D21]">
      <seq>tgctccgacggatttaaccgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttcacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagagttttgtcagtcaaatgcactctttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15038" stop="13023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14738" g_stop="14642" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="420" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="530" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13362" g_stop="13323" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="570" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E259216" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259216" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14738" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="13323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCGACGAATTTAA-CGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTC</genome_strand>
        <mrna_strand>TGCTCCGACGGATTTAACCGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256631" ref_strand="+" ref_description="SGN-E256631 [cLEG-40-A3]">
      <seq>tgctccgacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttcacggcaagaataaaagaatataacgtgagaaaacgttctccttatatgcatatacccacagagttttgtcagtcaaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15038" stop="13030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14738" g_stop="14642" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="419" r_length="322" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13494" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="529" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.921" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13362" g_stop="13330" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="562" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E256631" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14738" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13494"/>
          <exon e_start="13362" e_stop="13330"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATGGTGAGCTTTTAACTCTTCTTTTCTTTTATCCAAACCTCTGTCAACACAAACAATGATTTTTTTTTGTTGTAGTGCCTTAACACATTTAATATGATCTTTTCCTAAATTTCTTTAATGTGCTCTTATGACAGCATATACCCACAGAGTTTTGTCAGTCAAATGCA</genome_strand>
        <mrna_strand>TGCTCCGACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG...................................................................................................................................CATATACCCACAGAGTTTTGTCAGTCAAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237933" ref_strand="+" ref_description="SGN-E237933 [cLED-18-C22]">
      <seq>ggaatcgattgctccgacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaatagtgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctgctcagcccggaatagagaaaaggaaagttgagggagatcaacctcactaccaatgcatgaaaggaagttctgagttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15047" stop="13241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14747" g_stop="14642" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14167" g_length="322"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="428" r_length="322" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13603" g_stop="13541" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="491" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E237933" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237933" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14747" e_stop="14642"/>
          <exon e_start="14488" e_stop="14167"/>
          <exon e_start="13603" e_stop="13541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATCGATTGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTCTATTGATGTATAGAAATTACTTTCATATTGATACATTTATAGTAAGAAATTATAACCCTGCCTAAGATCAAGGACAACAACCAAACACCTTACCTTTAATAGATCTCCAGATTCTTTTGCTTTGCTTCCCTACAGTTGAATCTAATATTCCTAAGCTGAATATGGATATAGACAAAGATTTGATTGTCGATTTTTTTTTAAATGTGTATTATGAACAGATGCGTTGTCTGATTTAGGGACAGATGCGTTGTCTGATTTAAGGAAAACATGCTTGTAGTTGTACTATTGCTTATACTTTAACTTGGTATAGTTGTTTTACTATTATGGCAATCAATCTTGTCCAAAAAATAAATAAGGTACTGTTATATCAATCAAGAAACTGATATGGAATAAGAAAAGTTTCATCTTTTGTAACATTGTTAAAGCCATGTCTATGATGAATATTTCAGAAAAGTGGAAAGAAGGGTAATCTAGAGGAGTGTTCCAATGTACATTTCTATTGGGTTTGATGCTCTATTTCTTACTTTCTGTAGAGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCA</genome_strand>
        <mrna_strand>GGAATCGATTGCTCCGACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAATAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362436" ref_strand="+" ref_description="SGN-E362436 [cLPP-1-K17]">
      <seq>gaggactgttttgagtatacccaatactccgacgaatttaacaatgcaatcttcttcgccggaacttccgattagcagacgtttcttcaaggtcatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataaatcagaaaaggggacaataataaagggcaaggatacatggaatgttgaaattaatcgatccgagaagggcattatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtaatatgagtttcagtgttacccttcttgattcaactggctgtgataagaagttgctggaaaagagcgaagtagtaccttcccaggagaaaaagaaaaaggtgaaatctggtcagtccggaataggtaatttccctaaaattgttatttttcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15054" stop="13837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14736" g_stop="14642" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="121" r_length="95" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14137" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="473" r_length="352" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E362436" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14736" e_stop="14642"/>
          <exon e_start="14488" e_stop="14137"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTC</genome_strand>
        <mrna_strand>CTCCGACGAATTTAACAATGCAATCTTCTTCGCCGGAACTTCCGATTAGCAGACGTTTCTTCAAGGTCATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAAATCAGAAAAGGGGACAATAATAAAGGGCAAGGATACATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTAATATGAGTTTCAGTGTTACCCTTCTTGATTCAACTGGCTGTGATAAGAAGTTGCTGGAAAAGAGCGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGGTCAGTCCGGAATAGGTAATTTCCCTAAAATTGTTATTTTTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257882" ref_strand="+" ref_description="SGN-E257882 [cLEG-39-B14]">
      <seq>tgctccgacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaaagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15038" stop="13896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14738" g_stop="14642" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14488" g_stop="14196" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="390" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E257882" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14738" e_stop="14642"/>
          <exon e_start="14488" e_stop="14196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAA</genome_strand>
        <mrna_strand>TGCTCCGACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT.........................................................................................................................................................ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E328833" ref_strand="+" ref_description="SGN-E328833 [cTOC-24-I3]">
      <seq>aatcgattgctccgacggatttaacgatgcagtcttcttcgccagaacttccgattagcagacgtttcttcaaggttatggtgcctggttttcactctaaacttgtaagatactactgccatttctttctatttcttcataattttttttttttttgggtggtatcagttttctatatgaacggaagagaaacttccagaatttctggtgtttttgatagtatattccaatttttgttcaattcacctggtattgcagacaattccaccagctttttttccgaagctaaaaggggataatttagaaaaggggacaataataaagggcaaagatatatggaatgttgaaattaatcgatccgagaagggcactatctcgtttgataagggttgggaggaatttgtgcaaaatcatgacctaagagttggagattttgctgtgtttgagcacttgggtgatatgcgtttcagtgttacacttcttgattcaactggctgtgataagaagttgttggagaagagtgaagtagtaccttcccaggagaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="15045" stop="13900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14745" g_stop="14200" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E328833" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14745" e_stop="14200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCGATTGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAA-TTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAA</genome_strand>
        <mrna_strand>AATCGATTGCTCCGACGGATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCACTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416740" ref_strand="-" ref_description="SGN-E416740 [STM-23-F9]">
      <seq>ttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgtcggtgggacaacatatgaagagtcacgttcggttgctctgcagaattctacgaactctgggattcgttttatacttggtggttcttcccttctaaattctaaaagattcttgaaggaccttgaagaagctcagagaatcgctcgtataagcaccaatatgctttgaattttggactctacagtaccttgtgaaaatctgaaaatatagaatcacagtctaaagggggatacttggattctgcagaagtacataaagagctgagtttgctgatgaaattcccataaatacattgtgtatccactgtatcatcttctttcatagcttccgcgtcctgcccaagtgagacggttttgagacctcctcatctgtgtgccacttttcatgtctagatttgttatgtacatgtagtgttctcatattcctgatagacttctctggacttttagtcttgtagcatatctgggatcatgccctgactgttatttgaaatcacagaaagcttacatatggtacagtacatcttacagtagtttctgtgaagatagttattaactttatgttttgtttattttccccctttgatatattctaagtaggcgattaacatgctatttcatcttgtgattgaaatcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="20601" stop="15935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20301" g_stop="20272" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="162" r_length="132" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16859" g_stop="16749" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="273" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16748" i_stop="16660" i_length="89">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16659" g_stop="16231" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="702" r_length="429" r_score="0.890"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E416740" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416740" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20301" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16749"/>
          <exon e_start="16659" e_stop="16231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAGGTAAAATCTACATTCAGCTTGCAATCACTATAATCATTGTACAATCCTTTCAGCGGCAGTTGTATGATGACAATATCTTTCATTTTTAGTCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTCCGCGTTCTGCCCAAGTGAGACGGTTTTGAGACCACCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTGTGTACATGTAGTGTTCTCATATTCCTAAGATACTTCTCTTGACTTGTAGTCTTGTAGCATATCTGTTCTCATGTCCCGACTGTTATTTGGAATCACATAAAGCTTACATATGGTACAGTACATCTTACAGTAGTTTCTGTGAAGGTAGTTA-T---TTAATGTTATGTTTATTTGTCCCCTTTGATTTTTTTTAAGTAGCCAATTGAACATGCTATTTCATCTTGTGATTTGAAATCAAGAGACACTCA</genome_strand>
        <mrna_strand>TTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTCGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTGCAGAATTCTACGAACTCTGGGATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG.........................................................................................TCTAAAGGGGGATACTTGGATTCTGCAGAAGTACATAAAGAGCTGAGTTTGCTGATG-AAATTCCCATAAATACATTGTGTATCCACTGT-ATCATCTTCTTTCATAGCTTCCGCGTCCTGCCCAAGTGAGACGGTTTTGAGACCTCCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTATGTACATGTAGTGTTCTCATATTCCTGATAGACTTCTCTGGACTTTTAGTCTTGTAGCATATCTGGGATCATGCCCTGACTGTTATTTGAAATCACAGAAAGCTTACATATGGTACAGTACATCTTACAGTAGTTTCTGTGAAGATAGTTATTAACTTTATGTTTTGTTTATTTTCCCCCTTTGATATATTCTAAGTAGGCGATT-AACATGCTATTTCATCTTGTGA-TTGAAATCAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E369393" ref_strand="+" ref_description="SGN-E369393 [TUS-23-E1]">
      <seq>atacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggttgctctacagaactctacgaactctggcattcgttttatacttggtggttcttcccttctaaattctaaaagattcttgaaggaccttgaagaagctcagagaatcgctcgtataagcaccaatatgctttgaattttggactctacagtaccttgtgaaaatctgaaaatatagaatcacagtctaaatggggatacttggattctgcagaagtacataacgagctgagtttgctgatcaaaattcccataaatacattgtgtagccactgtaatcatcgtctttcatagcttccgcgttctgcccaagtgagacggttttgagaccacctcatctgtgtgccacttttcatgtctagatttgttgtgtacatgtagtgttctcatattcctaagatacttctcttgacttgtagtcttgtagcatatctgttctcatgtcccgactgttatttggaatcacataaagcctacatatggtacggtacatcttacagtagtttctgtgaaggtagttatttaatgttatgtttatttgtcccctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="20677" stop="15998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20377" g_stop="20272" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="238" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16859" g_stop="16749" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="349" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="16748" i_stop="16660" i_length="89">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="16659" g_stop="16298" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="711" r_length="362" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E369393" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20377" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16749"/>
          <exon e_start="16659" e_stop="16298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAGGTAAAATCTACATTCAGCTTGCAATCACTATAATCATTGTACAATCCTTTCAGCGGCAGTTGTATGATGACAATATCTTTCATTTTTAGTCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTCCGCGTTCTGCCCAAGTGAGACGGTTTTGAGACCACCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTGTGTACATGTAGTGTTCTCATATTCCTAAGATACTTCTCTTGACTTGTAGTCTTGTAGCATATCTGTTCTCATGTCCCGACTGTTATTTGGAATCACATAAAGCTTACATATGGTACAGTACATCTTACAGTAGTTTCTGTGAAGGTAGTTATTTAATGTTATGTTTATTTGTCCCCTT</genome_strand>
        <mrna_strand>ATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG.........................................................................................TCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATCAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTCCGCGTTCTGCCCAAGTGAGACGGTTTTGAGACCACCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTGTGTACATGTAGTGTTCTCATATTCCTAAGATACTTCTCTTGACTTGTAGTCTTGTAGCATATCTGTTCTCATGTCCCGACTGTTATTTGGAATCACATAAAGCCTACATATGGTACGGTACATCTTACAGTAGTTTCTGTGAAGGTAGTTATTTAATGTTATGTTTATTTGTCCCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262518" ref_strand="+" ref_description="SGN-E262518 [cLEG-63-C19]">
      <seq>ttggcttgcaatggtggacaaggggcagcattcgaggctgtgacaaatctattgaataatgataatatctctgatgttgaccgcctgcgccttgtcatgctgtacgccttgcgctatgagaaggagagtcctgttcaactaatgcagctattcaacaaattagcatctcggtcgcccaagtataagcctgggctagtgcaattccttctaaagcaagcaggagttgataagagaactggagatctgtacgggaacagagatctcctgaacattgcacgtaacatggctcgtgggctcaagggggttgagaatgtgtatacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggttgctctacagaactctacgaactctggcattcgttttatacttggtggttcttcccttctaaattctaaaagattcttgaaggaccttgaagaagctcagagaatcgctcgtataagcaccaatatgctttgaattttggactctacagtaccttgtgaaaatctgannatatagaatcacagaagtacataacgagctgagtttgctgatcaaaatcccataaatacattgtgtagccactggtatcatcgtctttcatagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="24641" stop="16248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24341" g_stop="24306" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22114" g_stop="21959" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="192" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21376" g_stop="21269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="300" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20393" g_stop="20272" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="554" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16859" g_stop="16749" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="555" r_stop="665" r_length="111" r_score="0.982"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16748" i_stop="16632" i_length="117">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.958" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16631" g_stop="16548" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="748" r_length="83" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E262518" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>749</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24341" e_stop="24306"/>
          <exon e_start="22114" e_stop="21959"/>
          <exon e_start="21376" e_stop="21269"/>
          <exon e_start="20393" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16749"/>
          <exon e_start="16631" e_stop="16548"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAGGTAGTTTGTTCCTCCAGGATTGAAGCATAATATTCTTATTATTATGGAAAAAATATGCGGAGAACTTGAGTAGAGAAATAAGGAAAATTTTGGAACTTGAGTAGATAAATAAGGGAAATTTTGGTTTAGTCTTTTCCTGTTCTCTACTTGTGGTGGCTATTTGGACCAAGTTTTATATGCTTAAATCCTTTTCTCTCTGATAAACTAGTTCACATTCTAAATTTCCTTTGATCACATTGAATATGTAACTCAAACCAAGGTAACTCTGCTTTTAAGCAACACCGATTTTCTTTAACTTCTACGTTGGAACTGTATTTGAAATTGTTTTAGCGAATAAATACTTCTAATGTAAACTGATAGTCAATGAGTTGTTTATGAGAGGGGATGAGGGATGAGGGGATGAAAGATTTGGGGACTGTTTGGATGGGCTTATAAAAAGTTAAACTTATAAGTCAAAAGTTAAAAATCATAAGTAGATGGTAGCCTACTTTTTAGGCCTAAAGTGGGTGCTTGGAAGTACTTTAATAACCTTTCCAGACACCTCCAAAACTAAAAAACTACTTAAACGTCAAAAGTACCTAAAAGTAGGTTAATCGAAACGGGCACTCACCGTTGCAACTTCCAAGTACTTTGTAAACACTGTTGCACATGATGCACACAATCATGTATGGACAAAATCCTTGATGACAAGAGCTTAGGTTGTATCAAGTAACCTTGCATACTAGAAAGATATATATGCACTAATGTGGTTTCATTTTGTGGTTAGCATATGCATTCATCAACCAAGGCATGTACACTTTGAGTTCATATTGTGCTTGTTTTAGTAATGTGTATTACTGTCACCAAGCTGGTGGAGGTGACAGGGTTACCTCGTATCAGTTAAAATTGGGGGCCAAGGATTAGTAGGATTGATCAGTTCCACCTGTTTGGTAAATGGATAGGCTAGCTATGGCATGGACTTCAACTTTAAGGATACATATTCGTGTTGGTAATGATTCTGCTAACAATGTGCATGGGGACGTGTTCAACAATTTTTTTTTCTTCTGTAAAGTATTTTATTTGCCTTTCAATTGTATTGATACACCTGTTCTCCAGTGTTACAAATGCTATGATTTTTGGGACCAATTAGGCGTAAACAGAAATTGTAAAGAAAGCACAAATTGGAAGAGCTTTTCTGCTGTTACAATAATTTGTCTCTTACAAGATTTTGTTCATGTGTTTGGAATTCTTTTTAATGATCTAGGAACTTTTGGAAAGTCTCTCTTGGTTTATTTACCATGTTTTTTGTTGTTAGGCTATGCAGAAATTCTCATAAATAATGATAATGATAATAATAAAACATAAATCATAACGTATTGTCAATCCGTGTTGTGTCTTCATTTTTCATTAAATATTTTTGAGGTAAATCCCATCTCCAAACCCCTTGTCTCATGGGTCAACACTGGTTTATCTACCTTCCACTTGATGACTTGAATTCCAATTTCAACAATTTTCTGTATCTGGTTCGACTGTGTCTCTCCCATCCAGGCTTTTTGATGCTAAACCTAGATGGTGTCATAAATATACAGTTGTATTTGTATCTAATTTGTGATATCCATCTATAAAGTGGCTATTCTAAATACAACATATATATTTTGTTTTGGAATCTTTAAAATTATTAATATGTCAATGAGTTCGCAGGCCCTGAGCAATATTTTTGATTCTATAAATGATACAAGTGTTTGCATCTCCTAAAAGAAAAGAAGATGTGACAAGTTTAGTTCAATCAAATACTAAGTTTATTTTGATAAAAAAAATATTCTGCCTTTCTGTACTAAAGTAATTCACCTTACATCATTGATATGTTTGTCGCTATTGGTTTCTGATAATTTCTCTGCAGTTGTAACTTAACTCTGTTTTTCCGGTGAGTTCTTAGCTTAAATCATGACTTGAGATTTATTGCAAAGTAGTATGTTGCCATTACTATATATATGTTAGTTATTGGTACCCTGGTTGTAGAAACTCTGTAAACACAAATTTCAAATCTTTGAAACATGTTACTTGTGTTTAGAATTCAGATATCTGCCAAGTGATATGCTATTGTGCAGTTTGAGTTGTCTTTTACTTAAAACTAGTGACTTCATGATTTGAAAATCAGTGGAAGACAGATCTTTTTGGGTGTAATTTCTTTTCTATTCTGCTATGTCTACAGGCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGGGTAAGGAGGAGTACTGTGATTGTTTCCCCTTTTCAGATTCTTTTTTGTGTTAGTCCTGCTATCTTGGTTCTGTTTACTTTTATTACCTGTATCTTACAAGTTATTCTGCCTTTGCCCAATGTCTCTTTTTGTGAAAGAGTAAAAGAAGATAATTAGGACCTCACTCAGTGCCTTCTGTAAAGGCCATTTTTCTTTTAGCCAACAGTTAATGTGCTTTATTTGTTATGTTGATTGATCTGATCTGTTTGTGGGTGCTAAAAAGTGATTGCTTCTGATGGTCTTCAAAGATATTTTGATGGCCTGGCCTTAAAGATTCTACTTTTCTGTTTATGCTATGATGTTTGTAGAAAAAGGGATAAAAAGAGGAATAACTATTATATTCTCTGAATGCTTGGTTATTATGTTTCATTTAAGTAGGTACAAAGACAGTGGTCTTGTTTAGTCCATGCTGGTTGTTGCTTATAGTTTATATGTAGACATTGATATCAAAGGAGGTTTTCTTCTATTGTTAATCTGCACTTGATGTTAAGTTGACAATTTTATCTGACAAATGAAATCATTTTTATTGGTTATGGTTTGAAGCTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAGGTGTGTCTAGAACTAGAATACTTTCTTTCTGTCTCTGGAATATTAACAAAAATCAGAAGTTTAAAGTAATATAGGATGGTAGAAACATCTCCTCAAGCATTTGTACTTGAGAAAAGAAAATGTCACATTGTAGACGATTTATTGATCCCTTCAGCCATGGCTGTATTTTTTAGTTCACGGTGCTTGCAGAGAACTTAAAAAGGTCAATGATAGACCTATTTTTGTGTCTCTAAGTTCATTTTAACATGTTTTTGATTAACCAGAAGTATTTCTTAAGGTTACACCAAGTAGGTTTTGTATTACAAGCACACATTAAGCGTTCGAGCAATATACACAATCTTTTATACAAACAGGAATTTCCTGGTTATAAATACATAATTTTTTTTTTTTAATAAAGGTGACAAAATGCTGCTATTTTCCATAATATGCTTCTGTTTGTTTCTAATTTTTGTTTTGTCCGCCAACTTATTGACATGTCTGCCTCTCTTTTAGGATAACCCGTTGTATTTTCATAACAGAAAACACCAATTTACCTCTTAAGGCAAAGCGACAATGTAACAGCAAGTGATCAGTAACCTCTTCCCGTTGTTTGCTGATACAACAACTACTAATGATAATAAATCTTCTATTCCTTGAACCGTCAGAACAGCATCACACACTGCACACCTTGTAAAAGAATCCACCTTTCTCGAAATGCTAGAACTCCAAATGGTTTGAACAGAAGTATCTCACAGATGACTCCTATTAAGTTAAAATATCCTCCTCCTGCTGTGTAACTTCTGGAAGATTATCCTCCTCTGGAAATGATTCTTATTTTACTTTCCTACGCCTTCTAGATGTAGATGTTAGTAGTTTACAGTTGTCTTTTGTCACAGGGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAGGTAAAATCTACATTCAGCTTGCAATCACTATAATCATTGTACAATCCTTTCAGCGGCAGTTGTATGATGACAATATCTTTCATTTTTAGTCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTC</genome_strand>
        <mrna_strand>TTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGANNATATAGAATCACAG.....................................................................................................................AAGTACATAACGAGCTGAGTTTGCTGATCAAAA-TCCCATAAATACATTGTGTAGCCACTGGTATCATCGTCTTTCATAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321498" ref_strand="+" ref_description="SGN-E321498 [cTOB-23-P9]">
      <seq>gtggacaaggggcagcattcgaggctgtgacaaatctattgaataatgataatatctctgatgttgaccgcctgcgccttgtcatgctgtacgccttgcgctatgagaaggagagtcctgttcaactaatgcagctattcaacaaattagcatctcggtcgcccaagtataagcctgggctagtgcaattccttctaaagcaagcaggagttgataagagaactggagatctgtacgggaacagagatctcctgaacattgcacgtaacatggctcgtgggctcaagggggttgagaatgtgtatacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggttgctctacagaactctacgaactctggcattcgttttatacttggtggttcttcccttctaaattctaaaagattcttgaaggaccttgaagaagctcagagaatcgctcgtataagcaccaatatgctttgaattttggactctacagtaccttgtgaaaatctgaaaatatagaatcacagtctaaatggggatacttggattctgcagaagtactaacgagctgagtttgctgatcaaattcccataaatacattgtgtagccactggtatcatcgtctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="24628" stop="16258"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24328" g_stop="24306" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22114" g_stop="21959" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="179" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21376" g_stop="21269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="287" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20393" g_stop="20272" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="409" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="541" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16859" g_stop="16749" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="652" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16748" i_stop="16660" i_length="89">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.542" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16659" g_stop="16558" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="752" r_length="100" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E321498" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>754</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24328" e_stop="24306"/>
          <exon e_start="22114" e_stop="21959"/>
          <exon e_start="21376" e_stop="21269"/>
          <exon e_start="20393" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16749"/>
          <exon e_start="16659" e_stop="16558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGACAAGGGGCAGCATTCGAGGTAGTTTGTTCCTCCAGGATTGAAGCATAATATTCTTATTATTATGGAAAAAATATGCGGAGAACTTGAGTAGAGAAATAAGGAAAATTTTGGAACTTGAGTAGATAAATAAGGGAAATTTTGGTTTAGTCTTTTCCTGTTCTCTACTTGTGGTGGCTATTTGGACCAAGTTTTATATGCTTAAATCCTTTTCTCTCTGATAAACTAGTTCACATTCTAAATTTCCTTTGATCACATTGAATATGTAACTCAAACCAAGGTAACTCTGCTTTTAAGCAACACCGATTTTCTTTAACTTCTACGTTGGAACTGTATTTGAAATTGTTTTAGCGAATAAATACTTCTAATGTAAACTGATAGTCAATGAGTTGTTTATGAGAGGGGATGAGGGATGAGGGGATGAAAGATTTGGGGACTGTTTGGATGGGCTTATAAAAAGTTAAACTTATAAGTCAAAAGTTAAAAATCATAAGTAGATGGTAGCCTACTTTTTAGGCCTAAAGTGGGTGCTTGGAAGTACTTTAATAACCTTTCCAGACACCTCCAAAACTAAAAAACTACTTAAACGTCAAAAGTACCTAAAAGTAGGTTAATCGAAACGGGCACTCACCGTTGCAACTTCCAAGTACTTTGTAAACACTGTTGCACATGATGCACACAATCATGTATGGACAAAATCCTTGATGACAAGAGCTTAGGTTGTATCAAGTAACCTTGCATACTAGAAAGATATATATGCACTAATGTGGTTTCATTTTGTGGTTAGCATATGCATTCATCAACCAAGGCATGTACACTTTGAGTTCATATTGTGCTTGTTTTAGTAATGTGTATTACTGTCACCAAGCTGGTGGAGGTGACAGGGTTACCTCGTATCAGTTAAAATTGGGGGCCAAGGATTAGTAGGATTGATCAGTTCCACCTGTTTGGTAAATGGATAGGCTAGCTATGGCATGGACTTCAACTTTAAGGATACATATTCGTGTTGGTAATGATTCTGCTAACAATGTGCATGGGGACGTGTTCAACAATTTTTTTTTCTTCTGTAAAGTATTTTATTTGCCTTTCAATTGTATTGATACACCTGTTCTCCAGTGTTACAAATGCTATGATTTTTGGGACCAATTAGGCGTAAACAGAAATTGTAAAGAAAGCACAAATTGGAAGAGCTTTTCTGCTGTTACAATAATTTGTCTCTTACAAGATTTTGTTCATGTGTTTGGAATTCTTTTTAATGATCTAGGAACTTTTGGAAAGTCTCTCTTGGTTTATTTACCATGTTTTTTGTTGTTAGGCTATGCAGAAATTCTCATAAATAATGATAATGATAATAATAAAACATAAATCATAACGTATTGTCAATCCGTGTTGTGTCTTCATTTTTCATTAAATATTTTTGAGGTAAATCCCATCTCCAAACCCCTTGTCTCATGGGTCAACACTGGTTTATCTACCTTCCACTTGATGACTTGAATTCCAATTTCAACAATTTTCTGTATCTGGTTCGACTGTGTCTCTCCCATCCAGGCTTTTTGATGCTAAACCTAGATGGTGTCATAAATATACAGTTGTATTTGTATCTAATTTGTGATATCCATCTATAAAGTGGCTATTCTAAATACAACATATATATTTTGTTTTGGAATCTTTAAAATTATTAATATGTCAATGAGTTCGCAGGCCCTGAGCAATATTTTTGATTCTATAAATGATACAAGTGTTTGCATCTCCTAAAAGAAAAGAAGATGTGACAAGTTTAGTTCAATCAAATACTAAGTTTATTTTGATAAAAAAAATATTCTGCCTTTCTGTACTAAAGTAATTCACCTTACATCATTGATATGTTTGTCGCTATTGGTTTCTGATAATTTCTCTGCAGTTGTAACTTAACTCTGTTTTTCCGGTGAGTTCTTAGCTTAAATCATGACTTGAGATTTATTGCAAAGTAGTATGTTGCCATTACTATATATATGTTAGTTATTGGTACCCTGGTTGTAGAAACTCTGTAAACACAAATTTCAAATCTTTGAAACATGTTACTTGTGTTTAGAATTCAGATATCTGCCAAGTGATATGCTATTGTGCAGTTTGAGTTGTCTTTTACTTAAAACTAGTGACTTCATGATTTGAAAATCAGTGGAAGACAGATCTTTTTGGGTGTAATTTCTTTTCTATTCTGCTATGTCTACAGGCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGGGTAAGGAGGAGTACTGTGATTGTTTCCCCTTTTCAGATTCTTTTTTGTGTTAGTCCTGCTATCTTGGTTCTGTTTACTTTTATTACCTGTATCTTACAAGTTATTCTGCCTTTGCCCAATGTCTCTTTTTGTGAAAGAGTAAAAGAAGATAATTAGGACCTCACTCAGTGCCTTCTGTAAAGGCCATTTTTCTTTTAGCCAACAGTTAATGTGCTTTATTTGTTATGTTGATTGATCTGATCTGTTTGTGGGTGCTAAAAAGTGATTGCTTCTGATGGTCTTCAAAGATATTTTGATGGCCTGGCCTTAAAGATTCTACTTTTCTGTTTATGCTATGATGTTTGTAGAAAAAGGGATAAAAAGAGGAATAACTATTATATTCTCTGAATGCTTGGTTATTATGTTTCATTTAAGTAGGTACAAAGACAGTGGTCTTGTTTAGTCCATGCTGGTTGTTGCTTATAGTTTATATGTAGACATTGATATCAAAGGAGGTTTTCTTCTATTGTTAATCTGCACTTGATGTTAAGTTGACAATTTTATCTGACAAATGAAATCATTTTTATTGGTTATGGTTTGAAGCTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAGGTGTGTCTAGAACTAGAATACTTTCTTTCTGTCTCTGGAATATTAACAAAAATCAGAAGTTTAAAGTAATATAGGATGGTAGAAACATCTCCTCAAGCATTTGTACTTGAGAAAAGAAAATGTCACATTGTAGACGATTTATTGATCCCTTCAGCCATGGCTGTATTTTTTAGTTCACGGTGCTTGCAGAGAACTTAAAAAGGTCAATGATAGACCTATTTTTGTGTCTCTAAGTTCATTTTAACATGTTTTTGATTAACCAGAAGTATTTCTTAAGGTTACACCAAGTAGGTTTTGTATTACAAGCACACATTAAGCGTTCGAGCAATATACACAATCTTTTATACAAACAGGAATTTCCTGGTTATAAATACATAATTTTTTTTTTTTAATAAAGGTGACAAAATGCTGCTATTTTCCATAATATGCTTCTGTTTGTTTCTAATTTTTGTTTTGTCCGCCAACTTATTGACATGTCTGCCTCTCTTTTAGGATAACCCGTTGTATTTTCATAACAGAAAACACCAATTTACCTCTTAAGGCAAAGCGACAATGTAACAGCAAGTGATCAGTAACCTCTTCCCGTTGTTTGCTGATACAACAACTACTAATGATAATAAATCTTCTATTCCTTGAACCGTCAGAACAGCATCACACACTGCACACCTTGTAAAAGAATCCACCTTTCTCGAAATGCTAGAACTCCAAATGGTTTGAACAGAAGTATCTCACAGATGACTCCTATTAAGTTAAAATATCCTCCTCCTGCTGTGTAACTTCTGGAAGATTATCCTCCTCTGGAAATGATTCTTATTTTACTTTCCTACGCCTTCTAGATGTAGATGTTAGTAGTTTACAGTTGTCTTTTGTCACAGGGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAGGTAAAATCTACATTCAGCTTGCAATCACTATAATCATTGTACAATCCTTTCAGCGGCAGTTGTATGATGACAATATCTTTCATTTTTAGTCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTT</genome_strand>
        <mrna_strand>GTGGACAAGGGGCAGCATTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG.........................................................................................TCTAAATGGGGATACTTGGATTCTGCAGAAGTAC-TAACGAGCTGAGTTTGCTGAT-CAAATTCCCATAAATACATTGTGTAGCCACTGGTATCATCGTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E262738" ref_strand="+" ref_description="SGN-E262738 [cLEG-63-D19]">
      <seq>ttggcttgcaatggtggacaaggggcagcattcgaggctgtgacaaatctattgaataatgataatatctctgatgttgaccgcctgcgccttgtcatgctgtacgccttgcgctatgagaaggagagtcctgttcaactaatgcagctattcaacaaattagcatctcggtcgcccaagtataagcctgggctagtgcaattccttctaaagcaagcaggagttgataagagaactggagatctgtacgggaacagagatctcctgaacattgcacgtaacatggctcgtgggctcaagggggttgagaatgtgtatacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggttgctctacagaactctacgaactctggcattcgttttatacttnggtggttcttcccttctaaattctaaaagattcttgaaggaccttgaagaagctcagagaatcgctcgtataagcaccaatatgctttgaattttggactctacagtacccttgtgaaatctgaaaatatagaatcacagaagtacataacgagctgagtttgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="24641" stop="16306"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24341" g_stop="24306" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22114" g_stop="21959" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="192" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21376" g_stop="21269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="300" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20393" g_stop="20272" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="422" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="555" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="0.96"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16859" g_stop="16749" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="666" r_length="111" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="16748" i_stop="16632" i_length="117">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.958" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="16631" g_stop="16606" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="667" r_stop="692" r_length="26" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E262738" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24341" e_stop="24306"/>
          <exon e_start="22114" e_stop="21959"/>
          <exon e_start="21376" e_stop="21269"/>
          <exon e_start="20393" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16749"/>
          <exon e_start="16631" e_stop="16606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAGGTAGTTTGTTCCTCCAGGATTGAAGCATAATATTCTTATTATTATGGAAAAAATATGCGGAGAACTTGAGTAGAGAAATAAGGAAAATTTTGGAACTTGAGTAGATAAATAAGGGAAATTTTGGTTTAGTCTTTTCCTGTTCTCTACTTGTGGTGGCTATTTGGACCAAGTTTTATATGCTTAAATCCTTTTCTCTCTGATAAACTAGTTCACATTCTAAATTTCCTTTGATCACATTGAATATGTAACTCAAACCAAGGTAACTCTGCTTTTAAGCAACACCGATTTTCTTTAACTTCTACGTTGGAACTGTATTTGAAATTGTTTTAGCGAATAAATACTTCTAATGTAAACTGATAGTCAATGAGTTGTTTATGAGAGGGGATGAGGGATGAGGGGATGAAAGATTTGGGGACTGTTTGGATGGGCTTATAAAAAGTTAAACTTATAAGTCAAAAGTTAAAAATCATAAGTAGATGGTAGCCTACTTTTTAGGCCTAAAGTGGGTGCTTGGAAGTACTTTAATAACCTTTCCAGACACCTCCAAAACTAAAAAACTACTTAAACGTCAAAAGTACCTAAAAGTAGGTTAATCGAAACGGGCACTCACCGTTGCAACTTCCAAGTACTTTGTAAACACTGTTGCACATGATGCACACAATCATGTATGGACAAAATCCTTGATGACAAGAGCTTAGGTTGTATCAAGTAACCTTGCATACTAGAAAGATATATATGCACTAATGTGGTTTCATTTTGTGGTTAGCATATGCATTCATCAACCAAGGCATGTACACTTTGAGTTCATATTGTGCTTGTTTTAGTAATGTGTATTACTGTCACCAAGCTGGTGGAGGTGACAGGGTTACCTCGTATCAGTTAAAATTGGGGGCCAAGGATTAGTAGGATTGATCAGTTCCACCTGTTTGGTAAATGGATAGGCTAGCTATGGCATGGACTTCAACTTTAAGGATACATATTCGTGTTGGTAATGATTCTGCTAACAATGTGCATGGGGACGTGTTCAACAATTTTTTTTTCTTCTGTAAAGTATTTTATTTGCCTTTCAATTGTATTGATACACCTGTTCTCCAGTGTTACAAATGCTATGATTTTTGGGACCAATTAGGCGTAAACAGAAATTGTAAAGAAAGCACAAATTGGAAGAGCTTTTCTGCTGTTACAATAATTTGTCTCTTACAAGATTTTGTTCATGTGTTTGGAATTCTTTTTAATGATCTAGGAACTTTTGGAAAGTCTCTCTTGGTTTATTTACCATGTTTTTTGTTGTTAGGCTATGCAGAAATTCTCATAAATAATGATAATGATAATAATAAAACATAAATCATAACGTATTGTCAATCCGTGTTGTGTCTTCATTTTTCATTAAATATTTTTGAGGTAAATCCCATCTCCAAACCCCTTGTCTCATGGGTCAACACTGGTTTATCTACCTTCCACTTGATGACTTGAATTCCAATTTCAACAATTTTCTGTATCTGGTTCGACTGTGTCTCTCCCATCCAGGCTTTTTGATGCTAAACCTAGATGGTGTCATAAATATACAGTTGTATTTGTATCTAATTTGTGATATCCATCTATAAAGTGGCTATTCTAAATACAACATATATATTTTGTTTTGGAATCTTTAAAATTATTAATATGTCAATGAGTTCGCAGGCCCTGAGCAATATTTTTGATTCTATAAATGATACAAGTGTTTGCATCTCCTAAAAGAAAAGAAGATGTGACAAGTTTAGTTCAATCAAATACTAAGTTTATTTTGATAAAAAAAATATTCTGCCTTTCTGTACTAAAGTAATTCACCTTACATCATTGATATGTTTGTCGCTATTGGTTTCTGATAATTTCTCTGCAGTTGTAACTTAACTCTGTTTTTCCGGTGAGTTCTTAGCTTAAATCATGACTTGAGATTTATTGCAAAGTAGTATGTTGCCATTACTATATATATGTTAGTTATTGGTACCCTGGTTGTAGAAACTCTGTAAACACAAATTTCAAATCTTTGAAACATGTTACTTGTGTTTAGAATTCAGATATCTGCCAAGTGATATGCTATTGTGCAGTTTGAGTTGTCTTTTACTTAAAACTAGTGACTTCATGATTTGAAAATCAGTGGAAGACAGATCTTTTTGGGTGTAATTTCTTTTCTATTCTGCTATGTCTACAGGCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGGGTAAGGAGGAGTACTGTGATTGTTTCCCCTTTTCAGATTCTTTTTTGTGTTAGTCCTGCTATCTTGGTTCTGTTTACTTTTATTACCTGTATCTTACAAGTTATTCTGCCTTTGCCCAATGTCTCTTTTTGTGAAAGAGTAAAAGAAGATAATTAGGACCTCACTCAGTGCCTTCTGTAAAGGCCATTTTTCTTTTAGCCAACAGTTAATGTGCTTTATTTGTTATGTTGATTGATCTGATCTGTTTGTGGGTGCTAAAAAGTGATTGCTTCTGATGGTCTTCAAAGATATTTTGATGGCCTGGCCTTAAAGATTCTACTTTTCTGTTTATGCTATGATGTTTGTAGAAAAAGGGATAAAAAGAGGAATAACTATTATATTCTCTGAATGCTTGGTTATTATGTTTCATTTAAGTAGGTACAAAGACAGTGGTCTTGTTTAGTCCATGCTGGTTGTTGCTTATAGTTTATATGTAGACATTGATATCAAAGGAGGTTTTCTTCTATTGTTAATCTGCACTTGATGTTAAGTTGACAATTTTATCTGACAAATGAAATCATTTTTATTGGTTATGGTTTGAAGCTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAGGTGTGTCTAGAACTAGAATACTTTCTTTCTGTCTCTGGAATATTAACAAAAATCAGAAGTTTAAAGTAATATAGGATGGTAGAAACATCTCCTCAAGCATTTGTACTTGAGAAAAGAAAATGTCACATTGTAGACGATTTATTGATCCCTTCAGCCATGGCTGTATTTTTTAGTTCACGGTGCTTGCAGAGAACTTAAAAAGGTCAATGATAGACCTATTTTTGTGTCTCTAAGTTCATTTTAACATGTTTTTGATTAACCAGAAGTATTTCTTAAGGTTACACCAAGTAGGTTTTGTATTACAAGCACACATTAAGCGTTCGAGCAATATACACAATCTTTTATACAAACAGGAATTTCCTGGTTATAAATACATAATTTTTTTTTTTTAATAAAGGTGACAAAATGCTGCTATTTTCCATAATATGCTTCTGTTTGTTTCTAATTTTTGTTTTGTCCGCCAACTTATTGACATGTCTGCCTCTCTTTTAGGATAACCCGTTGTATTTTCATAACAGAAAACACCAATTTACCTCTTAAGGCAAAGCGACAATGTAACAGCAAGTGATCAGTAACCTCTTCCCGTTGTTTGCTGATACAACAACTACTAATGATAATAAATCTTCTATTCCTTGAACCGTCAGAACAGCATCACACACTGCACACCTTGTAAAAGAATCCACCTTTCTCGAAATGCTAGAACTCCAAATGGTTTGAACAGAAGTATCTCACAGATGACTCCTATTAAGTTAAAATATCCTCCTCCTGCTGTGTAACTTCTGGAAGATTATCCTCCTCTGGAAATGATTCTTATTTTACTTTCCTACGCCTTCTAGATGTAGATGTTAGTAGTTTACAGTTGTCTTTTGTCACAGGGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTT-GGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTA-CCTTGTGAAAATCTGAAAATATAGAATCACAGGTAAAATCTACATTCAGCTTGCAATCACTATAATCATTGTACAATCCTTTCAGCGGCAGTTGTATGATGACAATATCTTTCATTTTTAGTCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTG</genome_strand>
        <mrna_strand>TTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTNGGTGGTTCTTCCCTTCTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCCTTGTG-AAATCTGAAAATATAGAATCACAG.....................................................................................................................AAGTACATAACGAGCTGAGTTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242532" ref_strand="+" ref_description="SGN-E242532 [cLED-30-O6]">
      <seq>cccagcatcaaccacttctattccaatctatggagaacatcaccaggggtcgactgatagatgtggactacccttatgtaagaaatcactttcagctagcatggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgttcggatgctctacagaactttccaaactctggagattggtttatacttggaggttcttcccttttaaattctaaaagattcttgaaggaccttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="20674" stop="16542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20374" g_stop="20272" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="0.92"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17205" g_stop="17074" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="235" r_length="132" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214">
            <donor d_prob="0.990" d_score="0.86"/>
            <acceptor a_prob="0.978" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="16859" g_stop="16842" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="253" r_length="18" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E242532" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20374" e_stop="20272"/>
          <exon e_start="17205" e_stop="17074"/>
          <exon e_start="16859" e_stop="16842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAGGTATGCTCTCCCTTGTACGCCAACCATCATTCTATATTTGATGCTTTTTCACACATTGGAGTCCTGAAGCTTATTTCCATCAACTTCAGAACATGTTTTTTGATTGTTATTCCTCATGGTCTCCCAGTTACATTGAACTCTTCAGAAGGTTTATTTAGTCTTAGCATTCAATTAACTGAAATCGTTTTATGTAATGCATCTGGTGGACCTGTAGATTCTTGAAGGACCTTGA</genome_strand>
        <mrna_strand>CCCAGCATCAACCACTTCTATTCCAATCTATGGAGAACATCACCAGGGGTCGACTGATAGATGTGGACTACCCTTATGTAAGAAATCACTTTCAGCTAGCATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGATGCTCTACAGAACTTTCCAAACTCTGGAGATTGGTTTATACTTGGAGGTTCTTCCCTTTTAAATTCTAAAAG......................................................................................................................................................................................................................ATTCTTGAAGGACCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273912" ref_strand="+" ref_description="SGN-E273912 [cLEN-7-F21]">
      <seq>tacggaaatgagcaaaatagttgaagagcgaaaactgatgttggtttcacagacggaacaagagttggcttgcaatggtggacaaggggcagcattcgaggctgtgacaaatctattgaataatgataatatctctgatgttgaccgcctgcgccttgtcatgctgtacgccttgcgctatgagaaggagagtcctgttcaactaatgcagctattcaacaaattagcatctcggtcgcccaagtataagcctgggctagtgcaattccttctaaagcaagcaggagttgataagagaactggagatctgtacgggaacagagatctcctgaacattgcacgtaacatggctcgtgggctcaagggggttgagaatgtgtatacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagcaaggccacaggaagtggtgattttcgttgttggtgggacaacatatgaagagtcacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="24705" stop="16851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24405" g_stop="24306" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22114" g_stop="21959" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="256" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21376" g_stop="21269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="364" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20393" g_stop="20272" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="486" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066">
            <donor d_prob="0.947" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="17205" g_stop="17151" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="541" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E273912" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24405" e_stop="24306"/>
          <exon e_start="22114" e_stop="21959"/>
          <exon e_start="21376" e_stop="21269"/>
          <exon e_start="20393" e_stop="20272"/>
          <exon e_start="17205" e_stop="17151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAGGTAGTTTGTTCCTCCAGGATTGAAGCATAATATTCTTATTATTATGGAAAAAATATGCGGAGAACTTGAGTAGAGAAATAAGGAAAATTTTGGAACTTGAGTAGATAAATAAGGGAAATTTTGGTTTAGTCTTTTCCTGTTCTCTACTTGTGGTGGCTATTTGGACCAAGTTTTATATGCTTAAATCCTTTTCTCTCTGATAAACTAGTTCACATTCTAAATTTCCTTTGATCACATTGAATATGTAACTCAAACCAAGGTAACTCTGCTTTTAAGCAACACCGATTTTCTTTAACTTCTACGTTGGAACTGTATTTGAAATTGTTTTAGCGAATAAATACTTCTAATGTAAACTGATAGTCAATGAGTTGTTTATGAGAGGGGATGAGGGATGAGGGGATGAAAGATTTGGGGACTGTTTGGATGGGCTTATAAAAAGTTAAACTTATAAGTCAAAAGTTAAAAATCATAAGTAGATGGTAGCCTACTTTTTAGGCCTAAAGTGGGTGCTTGGAAGTACTTTAATAACCTTTCCAGACACCTCCAAAACTAAAAAACTACTTAAACGTCAAAAGTACCTAAAAGTAGGTTAATCGAAACGGGCACTCACCGTTGCAACTTCCAAGTACTTTGTAAACACTGTTGCACATGATGCACACAATCATGTATGGACAAAATCCTTGATGACAAGAGCTTAGGTTGTATCAAGTAACCTTGCATACTAGAAAGATATATATGCACTAATGTGGTTTCATTTTGTGGTTAGCATATGCATTCATCAACCAAGGCATGTACACTTTGAGTTCATATTGTGCTTGTTTTAGTAATGTGTATTACTGTCACCAAGCTGGTGGAGGTGACAGGGTTACCTCGTATCAGTTAAAATTGGGGGCCAAGGATTAGTAGGATTGATCAGTTCCACCTGTTTGGTAAATGGATAGGCTAGCTATGGCATGGACTTCAACTTTAAGGATACATATTCGTGTTGGTAATGATTCTGCTAACAATGTGCATGGGGACGTGTTCAACAATTTTTTTTTCTTCTGTAAAGTATTTTATTTGCCTTTCAATTGTATTGATACACCTGTTCTCCAGTGTTACAAATGCTATGATTTTTGGGACCAATTAGGCGTAAACAGAAATTGTAAAGAAAGCACAAATTGGAAGAGCTTTTCTGCTGTTACAATAATTTGTCTCTTACAAGATTTTGTTCATGTGTTTGGAATTCTTTTTAATGATCTAGGAACTTTTGGAAAGTCTCTCTTGGTTTATTTACCATGTTTTTTGTTGTTAGGCTATGCAGAAATTCTCATAAATAATGATAATGATAATAATAAAACATAAATCATAACGTATTGTCAATCCGTGTTGTGTCTTCATTTTTCATTAAATATTTTTGAGGTAAATCCCATCTCCAAACCCCTTGTCTCATGGGTCAACACTGGTTTATCTACCTTCCACTTGATGACTTGAATTCCAATTTCAACAATTTTCTGTATCTGGTTCGACTGTGTCTCTCCCATCCAGGCTTTTTGATGCTAAACCTAGATGGTGTCATAAATATACAGTTGTATTTGTATCTAATTTGTGATATCCATCTATAAAGTGGCTATTCTAAATACAACATATATATTTTGTTTTGGAATCTTTAAAATTATTAATATGTCAATGAGTTCGCAGGCCCTGAGCAATATTTTTGATTCTATAAATGATACAAGTGTTTGCATCTCCTAAAAGAAAAGAAGATGTGACAAGTTTAGTTCAATCAAATACTAAGTTTATTTTGATAAAAAAAATATTCTGCCTTTCTGTACTAAAGTAATTCACCTTACATCATTGATATGTTTGTCGCTATTGGTTTCTGATAATTTCTCTGCAGTTGTAACTTAACTCTGTTTTTCCGGTGAGTTCTTAGCTTAAATCATGACTTGAGATTTATTGCAAAGTAGTATGTTGCCATTACTATATATATGTTAGTTATTGGTACCCTGGTTGTAGAAACTCTGTAAACACAAATTTCAAATCTTTGAAACATGTTACTTGTGTTTAGAATTCAGATATCTGCCAAGTGATATGCTATTGTGCAGTTTGAGTTGTCTTTTACTTAAAACTAGTGACTTCATGATTTGAAAATCAGTGGAAGACAGATCTTTTTGGGTGTAATTTCTTTTCTATTCTGCTATGTCTACAGGCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGGGTAAGGAGGAGTACTGTGATTGTTTCCCCTTTTCAGATTCTTTTTTGTGTTAGTCCTGCTATCTTGGTTCTGTTTACTTTTATTACCTGTATCTTACAAGTTATTCTGCCTTTGCCCAATGTCTCTTTTTGTGAAAGAGTAAAAGAAGATAATTAGGACCTCACTCAGTGCCTTCTGTAAAGGCCATTTTTCTTTTAGCCAACAGTTAATGTGCTTTATTTGTTATGTTGATTGATCTGATCTGTTTGTGGGTGCTAAAAAGTGATTGCTTCTGATGGTCTTCAAAGATATTTTGATGGCCTGGCCTTAAAGATTCTACTTTTCTGTTTATGCTATGATGTTTGTAGAAAAAGGGATAAAAAGAGGAATAACTATTATATTCTCTGAATGCTTGGTTATTATGTTTCATTTAAGTAGGTACAAAGACAGTGGTCTTGTTTAGTCCATGCTGGTTGTTGCTTATAGTTTATATGTAGACATTGATATCAAAGGAGGTTTTCTTCTATTGTTAATCTGCACTTGATGTTAAGTTGACAATTTTATCTGACAAATGAAATCATTTTTATTGGTTATGGTTTGAAGCTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAGGTGTGTCTAGAACTAGAATACTTTCTTTCTGTCTCTGGAATATTAACAAAAATCAGAAGTTTAAAGTAATATAGGATGGTAGAAACATCTCCTCAAGCATTTGTACTTGAGAAAAGAAAATGTCACATTGTAGACGATTTATTGATCCCTTCAGCCATGGCTGTATTTTTTAGTTCACGGTGCTTGCAGAGAACTTAAAAAGGTCAATGATAGACCTATTTTTGTGTCTCTAAGTTCATTTTAACATGTTTTTGATTAACCAGAAGTATTTCTTAAGGTTACACCAAGTAGGTTTTGTATTACAAGCACACATTAAGCGTTCGAGCAATATACACAATCTTTTATACAAACAGGAATTTCCTGGTTATAAATACATAATTTTTTTTTTTTAATAAAGGTGACAAAATGCTGCTATTTTCCATAATATGCTTCTGTTTGTTTCTAATTTTTGTTTTGTCCGCCAACTTATTGACATGTCTGCCTCTCTTTTAGGATAACCCGTTGTATTTTCATAACAGAAAACACCAATTTACCTCTTAAGGCAAAGCGACAATGTAACAGCAAGTGATCAGTAACCTCTTCCCGTTGTTTGCTGATACAACAACTACTAATGATAATAAATCTTCTATTCCTTGAACCGTCAGAACAGCATCACACACTGCACACCTTGTAAAAGAATCCACCTTTCTCGAAATGCTAGAACTCCAAATGGTTTGAACAGAAGTATCTCACAGATGACTCCTATTAAGTTAAAATATCCTCCTCCTGCTGTGTAACTTCTGGAAGATTATCCTCCTCTGGAAATGATTCTTATTTTACTTTCCTACGCCTTCTAGATGTAGATGTTAGTAGTTTACAGTTGTCTTTTGTCACAGGGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAGGTCAGTCAGCTGAACTGCAATGGTATTTCAAATTTTACTATTTCCATACAGGATTGAACCTTTTCTCTAGTAGTGCCCCAAGAGAATGAGTAAGTAGAACTCTAGCCAATTGACTTGTTATTATTTACAAGACTTCAGCAGTTTGACACAGGAAGTGCAACTACTTCCATAAATAATTCTGGTATTCATGAGATCTTTCTCATAGTAAGTATGTATCTCCGATACTGAAGCCACAATGTTGTGATTGAAATTAATAACCTAGCTATTGAAGCAATTGAAATTGATCACGATACCTCTTTGACTAAGTTTTCTTCCCCTGAATATGGAGTTCATGCATATATCATTGGCCCTACTTTTGTTAACATAACCAGTGGCCAGACTGGCGGCATATATGGGTCATAGCTGCCTGCCGGCGGTGTCAACTTTTTTTTTTAATACCAAGATCATTGAAGCTCTGATATCATGTTCAAGTTTGTGACCATCTCATCTAAAAGGTTAAGCTTTTAGAGAGACCACACTTATATTATTCAATACTAAACACCATTAATTTCATAACACCTAACCTTACAATTACCATCAAACCACTCCAACAAGAAAACTCTAGGTTAAAATCAAGAACTAGAAAATCCGACCCTTAGTCATTATCTTTTCCCACCTTAACAACAATAAACAAACCTTCCCATTCAGACTCCGTGCCCAAAGGCCTATGAATGAAATCTTTTGTTCATCTCCAAGAATATTATAAAATAAAATACTTGTCTAACTATTCAGTGTAGAAAACCTAGCCTACCTGGTGCTAAAAAACTATTGTAGAAAGTTTACTCGTGATCTTTGACTCATTTTGTGAAACTTTAGCTTGTTCTTGGTCTAAAATAGCAACACAAGAACAAAATACATCACAATACACCTAAATATTCTCGAATTATATCCATATCCCAAACCCTAGGCAAACCTCATGATTATTCCACCCAAACCAGAGTTTTTCCACCATTAATTCACCTAAAACTACCAATTCTATGTAACATAAGTGAATTACGATAAATAAATCAAGAATAATCAAGAATAACTTTTCTTAAGAGCTCAAGGGTCTTATGATTTTCCCACATTATATGAATTCAAATTCTTCTCTGGGGCTACAATTATATTCTCTGTGGCCTAGGAATCAAACTACAAAAGTAGGAGATCAGATTGCTCTAGGTCGCCCTTTCTCTTCTCTAGTATTGGGATTTTCCCACCTTAGATGAATCAAAATTCTCCCTAGGGCCACAATTACCTTCTCTAAGGCCTAGGAATCGAATCGAACTACAAAAATAGGAGATCAGATTACTCACATTTTCGAAGATTCCTGATAAAGAATGAAATTTGTCCTAGGTCGACCATGAATACAAACCATCTCGTAAGCTTTATTCTCCAAAATGTCCTTGGGGTTTTCCCACAATTATCGGTGCTGGAGAATCAAGAATAGGTTTGACTCTGACACCATATTAAGAAAATTGACCATGGGCCTAACTCAACCCAAAAGAGTAATGCCCAAAACCATATAAGAAGATCACAATACATTCCTTCAATCAATGTGGGACACTCTAAGAAGATCCGTGTTGCAATAGCAGATCCTATTTTGATCTCCTCTAAGTCTTGCACAATGTTTCCTTTTGGCAACCATCCTTTCTATGTGATTACATTTTCAATGCACACTGGCAATGTGGAAGACCTTATTGTCACGACTCTTATCTGGCACTTAGGCCGCGACAGGGCACCTGAAGAGCTTACTACCCGTTAGGTGAGCTCTAAGCTAAATGTGTAGAAAAATAAAGAATATACCAATAGTGCGAAAACACAATCCAACTACTGAGTGTGGCCAAAAATCCCATAAATGGCTGAGTCTTGAAGCTACTAGTTTGAATACAAAATACAAGAAGTACCAAGTCTTTTTTTTTGACACTAGTAGCATTTGTATTTCAGTCAGTACTTAGGTAGTACTGAAAAACCATATTTACATAAAAGAAGAAAAGGGTTATAGTCTTTCCAATGCCTGCTTAAGAAGAAGAAGGCACCATGATCCAACAGTACTCACCTCGACTGAACTGGACTGAAGAAAGCTGAAATAATTTAGGTACCTGCTACGTGGTTGCCATCTGTAGCTCCTGCACTCACAAAAACATCAAAAGTGCGAGTCTAAAGACCCTACAAGATCATCGGCACACCCTCTTAGCTTACCTGTGGGGCAAGTCTTAGAAATCTCTGCTAATGCAGAATAACACACTAATCAGTACAAATATAAGACTAATAATACGGATACTGAGCTATGTCTGAAATCATGTATACATACACGTAATGCACCCCTTCAAGCAATGATGTACACAGGATCTTTTGTAAGTGGTGTCAACATTTGAAGTAGTGAAATAAATTACTATATCGACATGAGAGATGCTAGAATAACTTCCTGGTAGTTGAATTATATTTTTATAACTCTTGATTTTTAAGAGCAAGTGTTTTGGCACATTGGTTAAATCCAATAAAATTTGAAAAAAATAATTGCGCATGGAGCTAATTTAGAACACCCATTGTGCTTCTGCAATTTCAAGCGTAAGACCATCAGACCACGTGGCATTGTCTGTCAAGCGGTGTCATTCACTGTTTATATATCCGTATTTTCACATTGTTTGAAGGTATATTCAGTTTAAAATATTCGATGAAGCGGTTTAGAATGACACTGCTTCGACTAACGTGCGTCTCTCCTGCCTTCAAGATCTGTTTGATACAGATGCATGTTGAGTTCCTCCTCCACCCAAGGCAAAATAAAAGCTTCTTTCCAGCGGCAGGTTATTCAACTTCGGAATGGTTGGAACTTTTAAAATAAATACCAAAACCAACTCTAGCTCCTGCTTCGCAGACCTTTAAAACTTTTTTCTCCTCTCTTTGTAGTTTTCCAAACTTTATATTTGAAATGAGGTCAACTAAACTTCCTCACGTTTTTAGGGTTCAAGATGAGGTGGAACATGGACAAAAATATTATGGTGCTTAAACTATTCATGTGGCTAAAAATAAATTGTTCATCACATACAGGCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGT</genome_strand>
        <mrna_strand>TACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293252" ref_strand="+" ref_description="SGN-E293252 [cLET-18-C21]">
      <seq>aaatttgtagacaactacccagaataccgaaaaatgcaagggaatgtttctaagcacgtgacactggttacggaaatgagcaaaatagttgaagagcgaaaactgatgttggtttcacagacggaacaagagttggcttgcaatggtggacaaggggcagcattcgaggctgtgacaaatctattgaataatgataatatctctgatgttgaccgcctgcgccttgtcatgctgtacgccttgcgctatgagaaggagagtcctgttcaactaatgcagctattcaacaaattagcatctcggtcgcccaagtataagcctgggctagtgcaattccttctaaagcaagcaggagttgataagagaactggagatctgtacgggaacagagatctcctgaacattgcacgtaacatggctcgtgggctcaagggggttgagaatgtgtatacccagcatcaaccacttctattccaaactatggagaacatcaccaggggtcgactgagagatgtggactacccttatgtaggaaatcactttcagcaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="24773" stop="19975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24473" g_stop="24306" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="22114" g_stop="21959" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="324" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582">
            <donor d_prob="0.641" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21376" g_stop="21269" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="432" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="20393" g_stop="20275" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="551" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E293252" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24473" e_stop="24306"/>
          <exon e_start="22114" e_stop="21959"/>
          <exon e_start="21376" e_stop="21269"/>
          <exon e_start="20393" e_stop="20275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACACTGGTTACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAGGTAGTTTGTTCCTCCAGGATTGAAGCATAATATTCTTATTATTATGGAAAAAATATGCGGAGAACTTGAGTAGAGAAATAAGGAAAATTTTGGAACTTGAGTAGATAAATAAGGGAAATTTTGGTTTAGTCTTTTCCTGTTCTCTACTTGTGGTGGCTATTTGGACCAAGTTTTATATGCTTAAATCCTTTTCTCTCTGATAAACTAGTTCACATTCTAAATTTCCTTTGATCACATTGAATATGTAACTCAAACCAAGGTAACTCTGCTTTTAAGCAACACCGATTTTCTTTAACTTCTACGTTGGAACTGTATTTGAAATTGTTTTAGCGAATAAATACTTCTAATGTAAACTGATAGTCAATGAGTTGTTTATGAGAGGGGATGAGGGATGAGGGGATGAAAGATTTGGGGACTGTTTGGATGGGCTTATAAAAAGTTAAACTTATAAGTCAAAAGTTAAAAATCATAAGTAGATGGTAGCCTACTTTTTAGGCCTAAAGTGGGTGCTTGGAAGTACTTTAATAACCTTTCCAGACACCTCCAAAACTAAAAAACTACTTAAACGTCAAAAGTACCTAAAAGTAGGTTAATCGAAACGGGCACTCACCGTTGCAACTTCCAAGTACTTTGTAAACACTGTTGCACATGATGCACACAATCATGTATGGACAAAATCCTTGATGACAAGAGCTTAGGTTGTATCAAGTAACCTTGCATACTAGAAAGATATATATGCACTAATGTGGTTTCATTTTGTGGTTAGCATATGCATTCATCAACCAAGGCATGTACACTTTGAGTTCATATTGTGCTTGTTTTAGTAATGTGTATTACTGTCACCAAGCTGGTGGAGGTGACAGGGTTACCTCGTATCAGTTAAAATTGGGGGCCAAGGATTAGTAGGATTGATCAGTTCCACCTGTTTGGTAAATGGATAGGCTAGCTATGGCATGGACTTCAACTTTAAGGATACATATTCGTGTTGGTAATGATTCTGCTAACAATGTGCATGGGGACGTGTTCAACAATTTTTTTTTCTTCTGTAAAGTATTTTATTTGCCTTTCAATTGTATTGATACACCTGTTCTCCAGTGTTACAAATGCTATGATTTTTGGGACCAATTAGGCGTAAACAGAAATTGTAAAGAAAGCACAAATTGGAAGAGCTTTTCTGCTGTTACAATAATTTGTCTCTTACAAGATTTTGTTCATGTGTTTGGAATTCTTTTTAATGATCTAGGAACTTTTGGAAAGTCTCTCTTGGTTTATTTACCATGTTTTTTGTTGTTAGGCTATGCAGAAATTCTCATAAATAATGATAATGATAATAATAAAACATAAATCATAACGTATTGTCAATCCGTGTTGTGTCTTCATTTTTCATTAAATATTTTTGAGGTAAATCCCATCTCCAAACCCCTTGTCTCATGGGTCAACACTGGTTTATCTACCTTCCACTTGATGACTTGAATTCCAATTTCAACAATTTTCTGTATCTGGTTCGACTGTGTCTCTCCCATCCAGGCTTTTTGATGCTAAACCTAGATGGTGTCATAAATATACAGTTGTATTTGTATCTAATTTGTGATATCCATCTATAAAGTGGCTATTCTAAATACAACATATATATTTTGTTTTGGAATCTTTAAAATTATTAATATGTCAATGAGTTCGCAGGCCCTGAGCAATATTTTTGATTCTATAAATGATACAAGTGTTTGCATCTCCTAAAAGAAAAGAAGATGTGACAAGTTTAGTTCAATCAAATACTAAGTTTATTTTGATAAAAAAAATATTCTGCCTTTCTGTACTAAAGTAATTCACCTTACATCATTGATATGTTTGTCGCTATTGGTTTCTGATAATTTCTCTGCAGTTGTAACTTAACTCTGTTTTTCCGGTGAGTTCTTAGCTTAAATCATGACTTGAGATTTATTGCAAAGTAGTATGTTGCCATTACTATATATATGTTAGTTATTGGTACCCTGGTTGTAGAAACTCTGTAAACACAAATTTCAAATCTTTGAAACATGTTACTTGTGTTTAGAATTCAGATATCTGCCAAGTGATATGCTATTGTGCAGTTTGAGTTGTCTTTTACTTAAAACTAGTGACTTCATGATTTGAAAATCAGTGGAAGACAGATCTTTTTGGGTGTAATTTCTTTTCTATTCTGCTATGTCTACAGGCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGGGTAAGGAGGAGTACTGTGATTGTTTCCCCTTTTCAGATTCTTTTTTGTGTTAGTCCTGCTATCTTGGTTCTGTTTACTTTTATTACCTGTATCTTACAAGTTATTCTGCCTTTGCCCAATGTCTCTTTTTGTGAAAGAGTAAAAGAAGATAATTAGGACCTCACTCAGTGCCTTCTGTAAAGGCCATTTTTCTTTTAGCCAACAGTTAATGTGCTTTATTTGTTATGTTGATTGATCTGATCTGTTTGTGGGTGCTAAAAAGTGATTGCTTCTGATGGTCTTCAAAGATATTTTGATGGCCTGGCCTTAAAGATTCTACTTTTCTGTTTATGCTATGATGTTTGTAGAAAAAGGGATAAAAAGAGGAATAACTATTATATTCTCTGAATGCTTGGTTATTATGTTTCATTTAAGTAGGTACAAAGACAGTGGTCTTGTTTAGTCCATGCTGGTTGTTGCTTATAGTTTATATGTAGACATTGATATCAAAGGAGGTTTTCTTCTATTGTTAATCTGCACTTGATGTTAAGTTGACAATTTTATCTGACAAATGAAATCATTTTTATTGGTTATGGTTTGAAGCTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAGGTGTGTCTAGAACTAGAATACTTTCTTTCTGTCTCTGGAATATTAACAAAAATCAGAAGTTTAAAGTAATATAGGATGGTAGAAACATCTCCTCAAGCATTTGTACTTGAGAAAAGAAAATGTCACATTGTAGACGATTTATTGATCCCTTCAGCCATGGCTGTATTTTTTAGTTCACGGTGCTTGCAGAGAACTTAAAAAGGTCAATGATAGACCTATTTTTGTGTCTCTAAGTTCATTTTAACATGTTTTTGATTAACCAGAAGTATTTCTTAAGGTTACACCAAGTAGGTTTTGTATTACAAGCACACATTAAGCGTTCGAGCAATATACACAATCTTTTATACAAACAGGAATTTCCTGGTTATAAATACATAATTTTTTTTTTTTAATAAAGGTGACAAAATGCTGCTATTTTCCATAATATGCTTCTGTTTGTTTCTAATTTTTGTTTTGTCCGCCAACTTATTGACATGTCTGCCTCTCTTTTAGGATAACCCGTTGTATTTTCATAACAGAAAACACCAATTTACCTCTTAAGGCAAAGCGACAATGTAACAGCAAGTGATCAGTAACCTCTTCCCGTTGTTTGCTGATACAACAACTACTAATGATAATAAATCTTCTATTCCTTGAACCGTCAGAACAGCATCACACACTGCACACCTTGTAAAAGAATCCACCTTTCTCGAAATGCTAGAACTCCAAATGGTTTGAACAGAAGTATCTCACAGATGACTCCTATTAAGTTAAAATATCCTCCTCCTGCTGTGTAACTTCTGGAAGATTATCCTCCTCTGGAAATGATTCTTATTTTACTTTCCTACGCCTTCTAGATGTAGATGTTAGTAGTTTACAGTTGTCTTTTGTCACAGGGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGC</genome_strand>
        <mrna_strand>AAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACACTGGTTACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E338756" ref_strand="+" ref_description="SGN-E338756 [cTOE-21-I22]">
      <seq>cctccaaagattagctgagatctgaaacaattttttccactgaattcaccagatcaatttctctgcatatttttggatttgtattgctgaaatcatacaaggagtttaaaaaaaaatggtacttgtagcagcggtgagggactatatcaatcgcatattgcaagacatttctgggatgaaagtcctcattcttgattcttctacggttagttctgttagtgttgtgtactctcagtcagagcttctgaagaaggaggtgttcctggtggagctggtagattctattgccatggctaaatttgtagacaactacccagaataccgaaaaatgcaagggaatgtttctaaacacgtgacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="32398" stop="24110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32098" g_stop="31894" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26577" g_stop="26497" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="286" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26496" i_stop="24485" i_length="2012">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24484" g_stop="24410" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="359" r_length="73" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E338756" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338756" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32098" e_stop="31894"/>
          <exon e_start="26577" e_stop="26497"/>
          <exon e_start="24484" e_stop="24410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCCAAAGATTAGCTGAGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACGGTTTGTTCTTTTCTTTCCAATTTAAAGAAACCCTTTTGTCTGCTTCTTTGTTTGTGCATATGTGGTTTGTAAATTATTAATTTTTGTGATGATAGTGAATGTTACATTGAGGTTGATGAGGGTTGTTGTCTGATCTGATAATGGGTAAGTGTGGGGGGATAATTCAAGTTCAGTGCAATATAACTTCTTAAATGTCGTCTTTTTGAGTGATAAATCCTGTGATCTGATGCTTTTTTTGTTTGAGTTAATATGTAATTACCAATCAACAACAACAATATAGTCAGTGAAATTCCAGTAAGTGGGGTTTGGGGAAGGTAGAGCGTATGCAGACAACTAGCTTGAGGAGGTAGAAAGGCAGTTTTTGAAAGACCTCGGCTCAAGTGCATCAAAACCAACATGTAGTTACCAAAGAAAGAAAAAAAGAACTCTTGAGCTTCAATCAGTTTATCAAACAGTCAACTACTTTTATATTAGTTGGGTTAGCTAAGTGAATCATTTGTACCCATTCTGTATCTATTGAGCTTTGTTTCATTTTGTACTAAACATTGTCTTTTAAGACAACTTAGGAGTTTTTTAAAGACCAGAATTCTCTGAATAGCATCCTTATAAAGATATATAGGTCTAACCAAGAATTGTTAGCAATGTGGTCAATGAAACACTAAAGGAAAATGGAAGTGCTCATTGCTGAGGCTACATTAACAATTTGATCATTGAGGATATGGGGTAGATTTGAGATACAGACTAGTATTAATAAATTCCTAACTCATCAGATATTTGCTTAATACATCTGAAAAAGGAGAAGAAAGCATAGAAGGTGTTATCATTGGTTGTGTTAGTGATGGATCCTCGCCCCAGAGATCTTATGAAGACTCTGGTGGTGCATGTGTGTGATAGGGCCCCACATAAGCGCCAAAGTCATAGAGATGTCATGGAAGTGATAAGCAAAGATGCGAAACCCTTTCTTGTTGGTGAAGTTATGAGGTTGGATGAGGTGACTAGACTCTAGGTGATGTTCACACCTTACCGTGCTAGTTTGTGTTTGACGCACTGTTGTTTATAAATTTGATATCGGAGCAGCCATTATACTTTCAAAGAGATATAAGCTGCTGTTTATGAATTCTGAAGATAAAGGATCAAAATGTTGTTTCTTGCTGGAGTAGATTCAGGCATGATTTGGAACTTGGAAGATCTGAATGATGCCTAAGGCATCATGAGACTCTATATAGCTGGAAGACATATCAGGAGCTTATCAAAGCAGTCACAGTTTGCATTTTGGGAAGGGTGGATGGAGAAATGATAGATGTTTTATATGAAGAATGAATGAAGAAGAGAAACCTTTTAGTGTTTGAAGTCCGAATGCTTATCGTTTTTGGTTTTAGGTGTAATCTAGTTGTAAAATGATATATATATATTGTAATGATTTTGTTATTTCCATACATAGGTTGGGGTGAGTAGATGTTTGTACTTTCTACAGATTAAGCTCCCATTTGGTGTTACTTACTTATGCGCTTGAGTGGAGCATTGTTTTGTTTTTAGTGACATGACATGATTGAAATGTCACTGCACAACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTAGAGTTTGGAACCCCTTGCCAGCGAAAGCAAAGGGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGCTTGCCTAGTGCGGGTTGCCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCTGTGCGCACCCAAAAGGGTAGCAGTTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAATGTCACTGCACAACTAGTACGATTTAGAAGTTTTATGATTCACTAGTCGTGAATGCTCTCTACAACAACAAACCAAATATGAGGCATCATACCCTAGGCAAATCCTGAATCAGGCAAAGATGGGAAATGTACTGCGTATGTAAGGAAATAAGCATTAGACTCTACTGATGCACTTTGAAGCCGTGTGGTTTAGATCCAAAGTGGACAATATCACCAGTGGGCTGGGCTAGTTGCCTAATAGATGAAAACCCTGTAACTCCTTTCCAATTGGATTTCTTCTCAGTTCAATATCTTTGTCTCCAATGTGTTGCCTACCATGTTGGCTTCTTTTCTAGCAAAAGCTGCCTGTTCTGGAAGATTTTATGCAACCAACTTATTAATGGCCTTAGTCTGTAGGAAGATGAATAGAATATGCTTTATTATATATGTTATGGAGACTAAACGAAGAAAAAAGAGGAGACTTAGAAGGATATGATAAACGCTAATATGAACAAGTGAACTTCTGGAAGCCTTACGCCTGTGGCAGCCGCTTACAAGAATACAATTTGGAAAAAGTATTTGTTATCTTTGGGAATTCAACTGTGTATGTAGTTGAAAATTGGAAATAGTAAGAGAACAAAAAACTGGTCTGATCATCTTGGGAGATGCCAAATCAAAATTCATTTCCTATTTTATGTATTGCATGGTAACAGATTGTTATAAAGATTTACTCTTCTAGAAGAATTTTTAATGATCAGGAGGTGGATGAAGCTTGTGAAACATTGAATTTATTAAGGCCAATTAAACAGGATGAGAACAACAAACATAGGTAAATTTTGGTTGGCGGGTAATCATGGTGTATTTTTACCTTACCTTCTTAGGAAAATAAGTAATAGTGGTGCATTCTCTGTGCAAGTTGCTACAAAATCTAGCTGAAAATTGGAAAGTTGAGTGGCCATGGGAAGTGATTTGGAAAACAAAAGCTCTTCCAAAGAGGCTTGTTTTTGGTTGTTTGGCTACAAATAATGCTTGCCTAACGTTGGACACTTCACAAAGAAGTGGAATTTCATCCTGTAGCAAATGTAATGTTTTGTTTGTGAAATAGCAGGGGAAACCACTGATTCTTCTACTGCATTTTAACTAAACCCGACAATTTTGGACATCATTTCTGTATATTTTTTGGGTGTAGTACGTTATGCCCTAGGATGTCAAGAATCTAATGTCAAGCTGGCAGGAATAGAGCATTGGGAACAATCTCAAACGAATTTGTTGGACTTCCCCATAATGTATCGCGTGGAATATTTGGCTGGAAAGAGATGAGAGATGTTCCGAAGAAAAGAATCTACATTTATCTCTAGTTGAATCTGAATGTATTCATAGTTTGTGCCTCCGGTGCACCAACACCAGATGCAGAAACTGGAACCAGAGGTGGACCCACATGGAAGGGTGATGGGTCATAGAACCCTGTTAACTTCGGAAAAGATCTTGTATATGTGTTATACCTTGATAAATGATCATATATCTTGTTAGGTACCAAGAGACACAAATGTTGATCAGGTGCACTGGTCCAACTAGTTGCTTAGTCCCTCTGCGCAAGTGTGATCACCAGTGTTCGTTGCATTCTTCTTGTCATTCTTTTTTTTTTAATTTTTTTTTTAAAAAGCATATAAAATGCGTACGCAGCGAGTTTCAAAGAGGAGTTTAATATGTAAAGTGGATTCACATCCATCAAACCGCAGGATGAGCCACTGTTTTTCCCGTTTGATATTTATCAATCCAACTACATCAGGTTTTTTTGTGCGAAATGAAATTTTCGATGAAGGGTGTCGCATGACACTGCTTCCACTAATGTGCATCCGCCTCTGGTGGTGCCGCCGTCATGTTCAAATCCTGGGTCCGCATGATCATCTTTTTGGTTTTTGAACTCCACGATGGCAAAGATATAATGAAGTCATTGTGATTGTCTTTTTCTGTACACTTCTGCAATATTTTCTTGGTACTATCTTAAATAAAATCATTTTTACATTATACCTAAAAAAGAGTATGTGTGTTGCATGTGCAACAACTTTCTTGGTGGAAGTTAGTTCTCTACTGTAAGGGTGTATTAGGTTTGGATTCTGGATTCTGTAGGATGGTTTGCTTTAAAATACAAGCTCTTTCCTCTTCTAATTAGATTATCAATTGGATACATCAGTTTGGTGTGGGATGGTTTTATGGAGGATAGTCTTCTTTGACATTTAAGCCTTTCTTTTTTGAAAACTCAATTCAGCCTTTTCTTTTTCTACCTATATGTACACACTTTTTATAGATAGGTATAGTGTCAACCTTATTGAAAATACCTGCATAAAGTGAATGCCAGGAAAGATTACGACCAAAAGGATGAGCCATTGCAAGTTATTTCATGCACTTAGAAGTCAACAATGGTCAAGCTGTCATTTACATCTTAAAGGGCCATGTTGCACCAAAGCCTAAGCAAAATGTACAATTGCACCAAGAATATAATCTTCTTTTCCTTGAAAAATCTGTGGTTGCAGTAAAATTGTGCACCAGAAAGAATAGGAGCACCACTTATACCTAGAATGTTGAAGACCATATCTCTAAACTGAGAATTATACTTGCGGTGAAGAACGAAGTGGTTAATGTTCTCTTCCTTTTCTTGCAAAGACAACATCTGTTGCTCAGCAGAACCGCTTTTCTGTTAATTGTTAGAAGGAAGATAAGCCTCTTTAATATCAACCAAATGATATTTCACTTTGTATGAAGCTTTACTCAACCAAATGGTTTTCCAGGGCCACAGAGGAATAGGTGCTGGTTTTTCCAACCGAGTGTAGCAGCTTCTAACGATGAAGGCATCTATAAAGGTAAAATTTTTCTCTTGGATTGGTCCTACAGTGTATTAGACCCATTTTTCACATGCATTAAATAGTGACATAGTGTATGTAGACAATGGGTCTATACACTGTTAGAACCCATCTTCCGTCCAAGAGAAAGATTTTACTTTTTTCCAATTCGATGGTTTCTCTTCACACCCTTTTTTGTAGTATTTCATCCCAAATAGAAATAGAATTTGCTTTAGCCCCAAGAGGAAGTCCAAAAATATATGGTTGGCAAATAATCAATGTTACATCCCAAAGTTTCTTCTAGATGGTTAATATTCTGAATCACTTTCTCAGGAAAACGACTATTTTTGGAGTAGTTGATTGCTTATTTCTACATTCTTTTGGTAGTTAAGTTGGTAAAATATGGCCATAAATGATGTAATTCTGTTTAACAATCTAGTAGAAGCTTTACCAGAATAATAATTAATTTTGTTGGATTCTCATGATGTTAAGTGCAAGTTTAGTTTTAGTTGGTTATATCTGCAAAATGTCTTCCCGTGTTAATGTTATCCATTCATAAATGTGTTGCCAAATCAGGTGTAGAACTTAATAAACCTGAGGTCAATTATGTTATTGTTGAGTCTCATATCTCATCAATTCTGAGAAGTGCAATACAGAGTGGTGTTTACTTTTCACTCTTGATGAGCAGGTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTATTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTTGTAAGTATTTCCTCTTTAATTGGATGGCATGAAAAATCTGCTAATATACGTCTGTGAACTGGTATTTTTCAGAAGAACTTAGTTTCAACACTGTTGTCTGAGTTTCTCAAGAATGACACATATCATATATCCTTTTTATTGCACAGTTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAGGTATGCTTAGATTTATCATTTTCTGCTATTTTACAGGTTTTAGTTTCCTTGTAAGAAGAGCAAGGATTGTAGTTTGGTTTATGTGTAAACATCTTTTGGTTTCAAGCACAATCTTTGTGCTGAAGATTCATATAATATACCAATATGTTAAACTTCTAAAAAAGGGGAAATAATTCGTAATCAAAAAGAATATTGTGTAGTATTGAAAAATTTAAGAAATTATAGCTCTATCCACTATCCAGAAACTGAAGATGAAGGGCCTTGCCCTTTTCTATTGTTGGTGTATAAACATGAATATATAGAAGACAGAGAATCTTCTATTGATGTTCTAAGATCTGTAAGATGGTTATAGCTTAGTACAGCTTCCTATATCCCCTGTAAGTATGGATAGGTGCAGTTTTTATGCAGCAAATAGTCATACAAAAAATGTTACCCTCTTAAAGAAAATAATGATTAAGAAATAGTTGCTGATACATATTTCTATTAGAGCTCTAAAAATTTGTTGTAGCCTGTAAGTTGTTTAAATGTGTAGTTGAAACTAGAAATTCGCTATGTTACATGATTATTGACGTGATTTGCAGGAATTTTATGCAGATTTTGTTGCGTTGGACCCTTACCATTTCACGTTAAATATGGCCGCAAACCACATGTATATGCTCCCAGCAGTTGTAGATCCATCAGGATTGCAGCAGTTCTGTGATCGAATCGTTGATGGAATGTCTGCAGTTTTCTTGGCGTTAAAGCGAAGGCCTATTATTCGATATTCAAGGACATCTGATATTGCGAAAAGAATAGCACATGAAGCTTCTGTAAGCACGTCAGCTGTTTCTTTCTTTTCCCTCAACTTCAATTTTTCGTTCTTTGTAGCCTAACAAGTTCTATTATTAGGTTTATTTCATTTCCCCTGCTTAGGGTCGAAGGTATAGTTGGTTTTGGATATTTGAGATTGGAAAAGGAAAAAGTTGAACATGTGTTTCATTCATATTGCAGAAGCTGATGTACCAGCAGGAGAGTGGCCTTTTTGATTTCAGAAGAACAGAAGTGTCTCCGTTGTTGCTAATAATTGATAGGCGGGATGACCCCGTGACTGCACTTCTTAATCAGTGGACCTATCAGGTATGGGTAGTCAGTAAGTTCTCCACGTTTGTCATTTCTAACAAATTGTGCCTCCCCCTCTTCTTCTTCTTCAAGTCACCTCGGAGTGTCACATAATGCTTCTTGTTTGTTTATGTACTTCTACAGGCAATGGTTCATGAGTTGATTGGTATTCAAGATAATAAGGTCAACCTGAAAAACGTTGGCAAGTTGCCAAAAGATCAACAGGTCAAAAAGCTCTTTCTTCTTGTATCTAAATACTACCTTGTTGTCTTTTCAACAGTAATTCATTTGCTGTTGATTTTTATGCTTTCAGGAGGTTGTACTGTCATCTGAGCAAGATGCATTTTTCAAAGCAAATATGTATGAGAACTTCGGAGATATTGGAATGAATATTAAGAAAATGGTGGACGACTTCCAACAAGTGGCAAAAAGTAACCAGAATATCCAGACGATAGGTTTGTATTGTAGCTTGGGTTGTACAGCAAGTGTTTCTGTTGCAATTCACTCAAACATGGTATTTTTCTACTAAAAAGGAAGCTTCTGTTTATAATGTCTGCATCTTTGCAGAGGACATGGCTAAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACAC</genome_strand>
        <mrna_strand>CCTCCAAAGATTAGCTGAGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAGTTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................--GCCATGGCTAAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAACACGTGACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415581" ref_strand="+" ref_description="SGN-E415581 [STM-21-H17]">
      <seq>attcttgattcctctacggttagttctgttagtgttgtgtactctcagtcagagcttctgaagaaggaggtgttcctggtggagctggtagattctattgccatgtccaaggaatccatgtcacatcttaaagcagtttattttttgaggccaacatcagagaatatccagcatatgcgtcgtcaactagctaagccacgatttggagaatatcacctttttttctccaatattttgaaagatactcaacttcatatgctagccgattcagatgagcatgaagttgtccagcagttgcaggaattttatgcagattttgttgcattggacgcttaccatttcacgttaaatattgccgcaaaccacatgtatatgctcccagcagttgtagatccatcaggattgcagcagttctgtgatcgaattgttgatggaatttctgcagttttcctggcgttaaagcgaaggcctattattcgatattcaaggacatctgatattgcgaaaagaatagcacatgaagcttctaagctgatgtaccagcaggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="26878" stop="24838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26577" g_stop="26376" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="220" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26375" i_stop="26230" i_length="146">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26229" g_stop="26150" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="300" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26149" i_stop="25569" i_length="581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25568" g_stop="25341" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="528" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25340" i_stop="25160" i_length="181">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25159" g_stop="25138" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="550" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E415581" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26577" e_stop="26376"/>
          <exon e_start="26229" e_stop="26150"/>
          <exon e_start="25568" e_stop="25341"/>
          <exon e_start="25159" e_stop="25138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTATTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTTGTAAGTATTTCCTCTTTAATTGGATGGCATGAAAAATCTGCTAATATACGTCTGTGAACTGGTATTTTTCAGAAGAACTTAGTTTCAACACTGTTGTCTGAGTTTCTCAAGAATGACACATATCATATATCCTTTTTATTGCACAGTTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAGGTATGCTTAGATTTATCATTTTCTGCTATTTTACAGGTTTTAGTTTCCTTGTAAGAAGAGCAAGGATTGTAGTTTGGTTTATGTGTAAACATCTTTTGGTTTCAAGCACAATCTTTGTGCTGAAGATTCATATAATATACCAATATGTTAAACTTCTAAAAAAGGGGAAATAATTCGTAATCAAAAAGAATATTGTGTAGTATTGAAAAATTTAAGAAATTATAGCTCTATCCACTATCCAGAAACTGAAGATGAAGGGCCTTGCCCTTTTCTATTGTTGGTGTATAAACATGAATATATAGAAGACAGAGAATCTTCTATTGATGTTCTAAGATCTGTAAGATGGTTATAGCTTAGTACAGCTTCCTATATCCCCTGTAAGTATGGATAGGTGCAGTTTTTATGCAGCAAATAGTCATACAAAAAATGTTACCCTCTTAAAGAAAATAATGATTAAGAAATAGTTGCTGATACATATTTCTATTAGAGCTCTAAAAATTTGTTGTAGCCTGTAAGTTGTTTAAATGTGTAGTTGAAACTAGAAATTCGCTATGTTACATGATTATTGACGTGATTTGCAGGAATTTTATGCAGATTTTGTTGCGTTGGACCCTTACCATTTCACGTTAAATATGGCCGCAAACCACATGTATATGCTCCCAGCAGTTGTAGATCCATCAGGATTGCAGCAGTTCTGTGATCGAATCGTTGATGGAATGTCTGCAGTTTTCTTGGCGTTAAAGCGAAGGCCTATTATTCGATATTCAAGGACATCTGATATTGCGAAAAGAATAGCACATGAAGCTTCTGTAAGCACGTCAGCTGTTTCTTTCTTTTCCCTCAACTTCAATTTTTCGTTCTTTGTAGCCTAACAAGTTCTATTATTAGGTTTATTTCATTTCCCCTGCTTAGGGTCGAAGGTATAGTTGGTTTTGGATATTTGAGATTGGAAAAGGAAAAAGTTGAACATGTGTTTCATTCATATTGCAGAAGCTGATGTACCAGCAGGAGA</genome_strand>
        <mrna_strand>GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAGGAATCCATGTCACATCTTAAAGCAGTTTATTTTTTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTT..................................................................................................................................................TTTTCTCCAATATTTTGAAAGATACTCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATGCAGATTTTGTTGCATTGGACGCTTACCATTTCACGTTAAATATTGCCGCAAACCACATGTATATGCTCCCAGCAGTTGTAGATCCATCAGGATTGCAGCAGTTCTGTGATCGAATTGTTGATGGAATTTCTGCAGTTTTCCTGGCGTTAAAGCGAAGGCCTATTATTCGATATTCAAGGACATCTGATATTGCGAAAAGAATAGCACATGAAGCTTCT.....................................................................................................................................................................................AAGCTGATGTACCAGCAGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437261" ref_strand="+" ref_description="SGN-E437261 [cSTA-3-O17]">
      <seq>attcttgattcctctacggttagttctgttagtgttgtgtactctcagtcagagcttctgaagaaggaggtgttcctggtggagctggtagattctattgccatgtccaaggaatccatgtcacatcttaaagcagtttattttttgaggccaacatcagagaatatccagcatatgcgtcgtcaactagctaagccacgatttggagaatatcacctttttttctccaatattttgaaagatactcaacttcatatgctagccgattcagatgagcatgaagttgtccagcagttgcaggaattttatgcagattttgttgcattggacgcttaccatttcacgttaaatattgccgcaaaccacatgtatatgctcccagcagttgtagatccatcaggattgcagcagttctgtgatcgaattgttgatggaatttctgcagttttcctggcgttaaagcgaaggcctattattcgatattcaaggacatctgatattgcgaaaagaatagcacatgaagcttctaagctgatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="26878" stop="25041"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26577" g_stop="26376" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="220" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26375" i_stop="26230" i_length="146">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26229" g_stop="26150" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="300" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26149" i_stop="25569" i_length="581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25568" g_stop="25341" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="528" r_length="228" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25340" i_stop="25160" i_length="181">
            <donor d_prob="0.824" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25159" g_stop="25148" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="540" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E437261" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26577" e_stop="26376"/>
          <exon e_start="26229" e_stop="26150"/>
          <exon e_start="25568" e_stop="25341"/>
          <exon e_start="25159" e_stop="25148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTATTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTTGTAAGTATTTCCTCTTTAATTGGATGGCATGAAAAATCTGCTAATATACGTCTGTGAACTGGTATTTTTCAGAAGAACTTAGTTTCAACACTGTTGTCTGAGTTTCTCAAGAATGACACATATCATATATCCTTTTTATTGCACAGTTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAGGTATGCTTAGATTTATCATTTTCTGCTATTTTACAGGTTTTAGTTTCCTTGTAAGAAGAGCAAGGATTGTAGTTTGGTTTATGTGTAAACATCTTTTGGTTTCAAGCACAATCTTTGTGCTGAAGATTCATATAATATACCAATATGTTAAACTTCTAAAAAAGGGGAAATAATTCGTAATCAAAAAGAATATTGTGTAGTATTGAAAAATTTAAGAAATTATAGCTCTATCCACTATCCAGAAACTGAAGATGAAGGGCCTTGCCCTTTTCTATTGTTGGTGTATAAACATGAATATATAGAAGACAGAGAATCTTCTATTGATGTTCTAAGATCTGTAAGATGGTTATAGCTTAGTACAGCTTCCTATATCCCCTGTAAGTATGGATAGGTGCAGTTTTTATGCAGCAAATAGTCATACAAAAAATGTTACCCTCTTAAAGAAAATAATGATTAAGAAATAGTTGCTGATACATATTTCTATTAGAGCTCTAAAAATTTGTTGTAGCCTGTAAGTTGTTTAAATGTGTAGTTGAAACTAGAAATTCGCTATGTTACATGATTATTGACGTGATTTGCAGGAATTTTATGCAGATTTTGTTGCGTTGGACCCTTACCATTTCACGTTAAATATGGCCGCAAACCACATGTATATGCTCCCAGCAGTTGTAGATCCATCAGGATTGCAGCAGTTCTGTGATCGAATCGTTGATGGAATGTCTGCAGTTTTCTTGGCGTTAAAGCGAAGGCCTATTATTCGATATTCAAGGACATCTGATATTGCGAAAAGAATAGCACATGAAGCTTCTGTAAGCACGTCAGCTGTTTCTTTCTTTTCCCTCAACTTCAATTTTTCGTTCTTTGTAGCCTAACAAGTTCTATTATTAGGTTTATTTCATTTCCCCTGCTTAGGGTCGAAGGTATAGTTGGTTTTGGATATTTGAGATTGGAAAAGGAAAAAGTTGAACATGTGTTTCATTCATATTGCAGAAGCTGATGTAC</genome_strand>
        <mrna_strand>GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAGGAATCCATGTCACATCTTAAAGCAGTTTATTTTTTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTT..................................................................................................................................................TTTTCTCCAATATTTTGAAAGATACTCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATGCAGATTTTGTTGCATTGGACGCTTACCATTTCACGTTAAATATTGCCGCAAACCACATGTATATGCTCCCAGCAGTTGTAGATCCATCAGGATTGCAGCAGTTCTGTGATCGAATTGTTGATGGAATTTCTGCAGTTTTCCTGGCGTTAAAGCGAAGGCCTATTATTCGATATTCAAGGACATCTGATATTGCGAAAAGAATAGCACATGAAGCTTCT.....................................................................................................................................................................................AAGCTGATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E439328" ref_strand="+" ref_description="SGN-E439328 [cSTA-11-B6]">
      <seq>aaacaattttttccactgaattcaccagatcaaatcctctgcatatttttgtattgtgattgctgaaatcatacaaggatttttaaaaaaatggtacttgtagcagcggtgagggactatatcaatcgcatgttgcaagacatttctgggatgaaagtcctcattcttgattcctctacggttagttctgttagtgttgtgtactctcagtcagagcttctgaagaaggaggtgttcctggtggagctggtagattctattgccatgtccaaggaatccatgtcacatcttaaagcagtttattttttgaggccaacatcagagaatatccagcatatgcgtcgtcaactagctaagccacgatttggagaatatcacctttttttctccaatattttgaaagatactcaacttcatatgctagccgattcagatgagcatgaagttgtccagcagttgcaggaattttatgcagattttgttgcattggacgcttaccatttcacgttaaatattgccgcaaaccacatgtatatgctcccagcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="32374" stop="25184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32074" g_stop="31894" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26577" g_stop="26376" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="382" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26375" i_stop="26230" i_length="146">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26229" g_stop="26150" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="462" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26149" i_stop="25569" i_length="581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25568" g_stop="25484" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="547" r_length="85" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E439328" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E439328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32074" e_stop="31894"/>
          <exon e_start="26577" e_stop="26376"/>
          <exon e_start="26229" e_stop="26150"/>
          <exon e_start="25568" e_stop="25484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACGGTTTGTTCTTTTCTTTCCAATTTAAAGAAACCCTTTTGTCTGCTTCTTTGTTTGTGCATATGTGGTTTGTAAATTATTAATTTTTGTGATGATAGTGAATGTTACATTGAGGTTGATGAGGGTTGTTGTCTGATCTGATAATGGGTAAGTGTGGGGGGATAATTCAAGTTCAGTGCAATATAACTTCTTAAATGTCGTCTTTTTGAGTGATAAATCCTGTGATCTGATGCTTTTTTTGTTTGAGTTAATATGTAATTACCAATCAACAACAACAATATAGTCAGTGAAATTCCAGTAAGTGGGGTTTGGGGAAGGTAGAGCGTATGCAGACAACTAGCTTGAGGAGGTAGAAAGGCAGTTTTTGAAAGACCTCGGCTCAAGTGCATCAAAACCAACATGTAGTTACCAAAGAAAGAAAAAAAGAACTCTTGAGCTTCAATCAGTTTATCAAACAGTCAACTACTTTTATATTAGTTGGGTTAGCTAAGTGAATCATTTGTACCCATTCTGTATCTATTGAGCTTTGTTTCATTTTGTACTAAACATTGTCTTTTAAGACAACTTAGGAGTTTTTTAAAGACCAGAATTCTCTGAATAGCATCCTTATAAAGATATATAGGTCTAACCAAGAATTGTTAGCAATGTGGTCAATGAAACACTAAAGGAAAATGGAAGTGCTCATTGCTGAGGCTACATTAACAATTTGATCATTGAGGATATGGGGTAGATTTGAGATACAGACTAGTATTAATAAATTCCTAACTCATCAGATATTTGCTTAATACATCTGAAAAAGGAGAAGAAAGCATAGAAGGTGTTATCATTGGTTGTGTTAGTGATGGATCCTCGCCCCAGAGATCTTATGAAGACTCTGGTGGTGCATGTGTGTGATAGGGCCCCACATAAGCGCCAAAGTCATAGAGATGTCATGGAAGTGATAAGCAAAGATGCGAAACCCTTTCTTGTTGGTGAAGTTATGAGGTTGGATGAGGTGACTAGACTCTAGGTGATGTTCACACCTTACCGTGCTAGTTTGTGTTTGACGCACTGTTGTTTATAAATTTGATATCGGAGCAGCCATTATACTTTCAAAGAGATATAAGCTGCTGTTTATGAATTCTGAAGATAAAGGATCAAAATGTTGTTTCTTGCTGGAGTAGATTCAGGCATGATTTGGAACTTGGAAGATCTGAATGATGCCTAAGGCATCATGAGACTCTATATAGCTGGAAGACATATCAGGAGCTTATCAAAGCAGTCACAGTTTGCATTTTGGGAAGGGTGGATGGAGAAATGATAGATGTTTTATATGAAGAATGAATGAAGAAGAGAAACCTTTTAGTGTTTGAAGTCCGAATGCTTATCGTTTTTGGTTTTAGGTGTAATCTAGTTGTAAAATGATATATATATATTGTAATGATTTTGTTATTTCCATACATAGGTTGGGGTGAGTAGATGTTTGTACTTTCTACAGATTAAGCTCCCATTTGGTGTTACTTACTTATGCGCTTGAGTGGAGCATTGTTTTGTTTTTAGTGACATGACATGATTGAAATGTCACTGCACAACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTAGAGTTTGGAACCCCTTGCCAGCGAAAGCAAAGGGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGCTTGCCTAGTGCGGGTTGCCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCTGTGCGCACCCAAAAGGGTAGCAGTTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAATGTCACTGCACAACTAGTACGATTTAGAAGTTTTATGATTCACTAGTCGTGAATGCTCTCTACAACAACAAACCAAATATGAGGCATCATACCCTAGGCAAATCCTGAATCAGGCAAAGATGGGAAATGTACTGCGTATGTAAGGAAATAAGCATTAGACTCTACTGATGCACTTTGAAGCCGTGTGGTTTAGATCCAAAGTGGACAATATCACCAGTGGGCTGGGCTAGTTGCCTAATAGATGAAAACCCTGTAACTCCTTTCCAATTGGATTTCTTCTCAGTTCAATATCTTTGTCTCCAATGTGTTGCCTACCATGTTGGCTTCTTTTCTAGCAAAAGCTGCCTGTTCTGGAAGATTTTATGCAACCAACTTATTAATGGCCTTAGTCTGTAGGAAGATGAATAGAATATGCTTTATTATATATGTTATGGAGACTAAACGAAGAAAAAAGAGGAGACTTAGAAGGATATGATAAACGCTAATATGAACAAGTGAACTTCTGGAAGCCTTACGCCTGTGGCAGCCGCTTACAAGAATACAATTTGGAAAAAGTATTTGTTATCTTTGGGAATTCAACTGTGTATGTAGTTGAAAATTGGAAATAGTAAGAGAACAAAAAACTGGTCTGATCATCTTGGGAGATGCCAAATCAAAATTCATTTCCTATTTTATGTATTGCATGGTAACAGATTGTTATAAAGATTTACTCTTCTAGAAGAATTTTTAATGATCAGGAGGTGGATGAAGCTTGTGAAACATTGAATTTATTAAGGCCAATTAAACAGGATGAGAACAACAAACATAGGTAAATTTTGGTTGGCGGGTAATCATGGTGTATTTTTACCTTACCTTCTTAGGAAAATAAGTAATAGTGGTGCATTCTCTGTGCAAGTTGCTACAAAATCTAGCTGAAAATTGGAAAGTTGAGTGGCCATGGGAAGTGATTTGGAAAACAAAAGCTCTTCCAAAGAGGCTTGTTTTTGGTTGTTTGGCTACAAATAATGCTTGCCTAACGTTGGACACTTCACAAAGAAGTGGAATTTCATCCTGTAGCAAATGTAATGTTTTGTTTGTGAAATAGCAGGGGAAACCACTGATTCTTCTACTGCATTTTAACTAAACCCGACAATTTTGGACATCATTTCTGTATATTTTTTGGGTGTAGTACGTTATGCCCTAGGATGTCAAGAATCTAATGTCAAGCTGGCAGGAATAGAGCATTGGGAACAATCTCAAACGAATTTGTTGGACTTCCCCATAATGTATCGCGTGGAATATTTGGCTGGAAAGAGATGAGAGATGTTCCGAAGAAAAGAATCTACATTTATCTCTAGTTGAATCTGAATGTATTCATAGTTTGTGCCTCCGGTGCACCAACACCAGATGCAGAAACTGGAACCAGAGGTGGACCCACATGGAAGGGTGATGGGTCATAGAACCCTGTTAACTTCGGAAAAGATCTTGTATATGTGTTATACCTTGATAAATGATCATATATCTTGTTAGGTACCAAGAGACACAAATGTTGATCAGGTGCACTGGTCCAACTAGTTGCTTAGTCCCTCTGCGCAAGTGTGATCACCAGTGTTCGTTGCATTCTTCTTGTCATTCTTTTTTTTTTAATTTTTTTTTTAAAAAGCATATAAAATGCGTACGCAGCGAGTTTCAAAGAGGAGTTTAATATGTAAAGTGGATTCACATCCATCAAACCGCAGGATGAGCCACTGTTTTTCCCGTTTGATATTTATCAATCCAACTACATCAGGTTTTTTTGTGCGAAATGAAATTTTCGATGAAGGGTGTCGCATGACACTGCTTCCACTAATGTGCATCCGCCTCTGGTGGTGCCGCCGTCATGTTCAAATCCTGGGTCCGCATGATCATCTTTTTGGTTTTTGAACTCCACGATGGCAAAGATATAATGAAGTCATTGTGATTGTCTTTTTCTGTACACTTCTGCAATATTTTCTTGGTACTATCTTAAATAAAATCATTTTTACATTATACCTAAAAAAGAGTATGTGTGTTGCATGTGCAACAACTTTCTTGGTGGAAGTTAGTTCTCTACTGTAAGGGTGTATTAGGTTTGGATTCTGGATTCTGTAGGATGGTTTGCTTTAAAATACAAGCTCTTTCCTCTTCTAATTAGATTATCAATTGGATACATCAGTTTGGTGTGGGATGGTTTTATGGAGGATAGTCTTCTTTGACATTTAAGCCTTTCTTTTTTGAAAACTCAATTCAGCCTTTTCTTTTTCTACCTATATGTACACACTTTTTATAGATAGGTATAGTGTCAACCTTATTGAAAATACCTGCATAAAGTGAATGCCAGGAAAGATTACGACCAAAAGGATGAGCCATTGCAAGTTATTTCATGCACTTAGAAGTCAACAATGGTCAAGCTGTCATTTACATCTTAAAGGGCCATGTTGCACCAAAGCCTAAGCAAAATGTACAATTGCACCAAGAATATAATCTTCTTTTCCTTGAAAAATCTGTGGTTGCAGTAAAATTGTGCACCAGAAAGAATAGGAGCACCACTTATACCTAGAATGTTGAAGACCATATCTCTAAACTGAGAATTATACTTGCGGTGAAGAACGAAGTGGTTAATGTTCTCTTCCTTTTCTTGCAAAGACAACATCTGTTGCTCAGCAGAACCGCTTTTCTGTTAATTGTTAGAAGGAAGATAAGCCTCTTTAATATCAACCAAATGATATTTCACTTTGTATGAAGCTTTACTCAACCAAATGGTTTTCCAGGGCCACAGAGGAATAGGTGCTGGTTTTTCCAACCGAGTGTAGCAGCTTCTAACGATGAAGGCATCTATAAAGGTAAAATTTTTCTCTTGGATTGGTCCTACAGTGTATTAGACCCATTTTTCACATGCATTAAATAGTGACATAGTGTATGTAGACAATGGGTCTATACACTGTTAGAACCCATCTTCCGTCCAAGAGAAAGATTTTACTTTTTTCCAATTCGATGGTTTCTCTTCACACCCTTTTTTGTAGTATTTCATCCCAAATAGAAATAGAATTTGCTTTAGCCCCAAGAGGAAGTCCAAAAATATATGGTTGGCAAATAATCAATGTTACATCCCAAAGTTTCTTCTAGATGGTTAATATTCTGAATCACTTTCTCAGGAAAACGACTATTTTTGGAGTAGTTGATTGCTTATTTCTACATTCTTTTGGTAGTTAAGTTGGTAAAATATGGCCATAAATGATGTAATTCTGTTTAACAATCTAGTAGAAGCTTTACCAGAATAATAATTAATTTTGTTGGATTCTCATGATGTTAAGTGCAAGTTTAGTTTTAGTTGGTTATATCTGCAAAATGTCTTCCCGTGTTAATGTTATCCATTCATAAATGTGTTGCCAAATCAGGTGTAGAACTTAATAAACCTGAGGTCAATTATGTTATTGTTGAGTCTCATATCTCATCAATTCTGAGAAGTGCAATACAGAGTGGTGTTTACTTTTCACTCTTGATGAGCAGGTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTATTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTTGTAAGTATTTCCTCTTTAATTGGATGGCATGAAAAATCTGCTAATATACGTCTGTGAACTGGTATTTTTCAGAAGAACTTAGTTTCAACACTGTTGTCTGAGTTTCTCAAGAATGACACATATCATATATCCTTTTTATTGCACAGTTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAGGTATGCTTAGATTTATCATTTTCTGCTATTTTACAGGTTTTAGTTTCCTTGTAAGAAGAGCAAGGATTGTAGTTTGGTTTATGTGTAAACATCTTTTGGTTTCAAGCACAATCTTTGTGCTGAAGATTCATATAATATACCAATATGTTAAACTTCTAAAAAAGGGGAAATAATTCGTAATCAAAAAGAATATTGTGTAGTATTGAAAAATTTAAGAAATTATAGCTCTATCCACTATCCAGAAACTGAAGATGAAGGGCCTTGCCCTTTTCTATTGTTGGTGTATAAACATGAATATATAGAAGACAGAGAATCTTCTATTGATGTTCTAAGATCTGTAAGATGGTTATAGCTTAGTACAGCTTCCTATATCCCCTGTAAGTATGGATAGGTGCAGTTTTTATGCAGCAAATAGTCATACAAAAAATGTTACCCTCTTAAAGAAAATAATGATTAAGAAATAGTTGCTGATACATATTTCTATTAGAGCTCTAAAAATTTGTTGTAGCCTGTAAGTTGTTTAAATGTGTAGTTGAAACTAGAAATTCGCTATGTTACATGATTATTGACGTGATTTGCAGGAATTTTATGCAGATTTTGTTGCGTTGGACCCTTACCATTTCACGTTAAATATGGCCGCAAACCACATGTATATGCTCCCAGCAG</genome_strand>
        <mrna_strand>AAACAATTTTTTCCACTGAATTCACCAGATCAAATCCTCTGCATATTTTTGTATTGTGATTGCTGAAATCATACAAGGATTTTTAAAA-AAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATGTTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCCTCTACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAGGAATCCATGTCACATCTTAAAGCAGTTTATTTTTTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTT..................................................................................................................................................TTTTCTCCAATATTTTGAAAGATACTCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATGCAGATTTTGTTGCATTGGACGCTTACCATTTCACGTTAAATATTGCCGCAAACCACATGTATATGCTCCCAGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E416739" ref_strand="+" ref_description="SGN-E416739 [STM-23-F9]">
      <seq>aaaccaattttttccactgaattcaccagatcaaatcctctgcatatttttgtattgtgattgctgaaatcatacaaggatttttaaaaaaatggtacttgtagcagcggtgagggactatatcaatcgcatgttgcaagacatttctgggatgaaagtcctcattcttgattcctctacggttagttctgttagtgttgtgtactctcagtcagagcttctgaagaaggaggtgttcctggtggagctggtagattctattgccatgtccaaggaatccatgtcacatcttaaagcagtttattttttgaggccaacatcagagaatatccagcatatgcgtcgtcaactagctaagccacgatttggagaatatcacctttttttctccaatattttgaaagatactcaacttcatatgctagccgattcagatgagcatgaagttgtccagcagttgcaggaattttatgcagattttgttgcattggacgcttaccatttcacgttaaatattgccgcaaaccacatgtatatgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="32374" stop="25191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32075" g_stop="31894" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26577" g_stop="26376" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="383" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26375" i_stop="26230" i_length="146">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26229" g_stop="26150" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="463" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26149" i_stop="25569" i_length="581">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25568" g_stop="25491" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="541" r_length="78" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E416739" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E416739" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32075" e_stop="31894"/>
          <exon e_start="26577" e_stop="26376"/>
          <exon e_start="26229" e_stop="26150"/>
          <exon e_start="25568" e_stop="25491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACGGTTTGTTCTTTTCTTTCCAATTTAAAGAAACCCTTTTGTCTGCTTCTTTGTTTGTGCATATGTGGTTTGTAAATTATTAATTTTTGTGATGATAGTGAATGTTACATTGAGGTTGATGAGGGTTGTTGTCTGATCTGATAATGGGTAAGTGTGGGGGGATAATTCAAGTTCAGTGCAATATAACTTCTTAAATGTCGTCTTTTTGAGTGATAAATCCTGTGATCTGATGCTTTTTTTGTTTGAGTTAATATGTAATTACCAATCAACAACAACAATATAGTCAGTGAAATTCCAGTAAGTGGGGTTTGGGGAAGGTAGAGCGTATGCAGACAACTAGCTTGAGGAGGTAGAAAGGCAGTTTTTGAAAGACCTCGGCTCAAGTGCATCAAAACCAACATGTAGTTACCAAAGAAAGAAAAAAAGAACTCTTGAGCTTCAATCAGTTTATCAAACAGTCAACTACTTTTATATTAGTTGGGTTAGCTAAGTGAATCATTTGTACCCATTCTGTATCTATTGAGCTTTGTTTCATTTTGTACTAAACATTGTCTTTTAAGACAACTTAGGAGTTTTTTAAAGACCAGAATTCTCTGAATAGCATCCTTATAAAGATATATAGGTCTAACCAAGAATTGTTAGCAATGTGGTCAATGAAACACTAAAGGAAAATGGAAGTGCTCATTGCTGAGGCTACATTAACAATTTGATCATTGAGGATATGGGGTAGATTTGAGATACAGACTAGTATTAATAAATTCCTAACTCATCAGATATTTGCTTAATACATCTGAAAAAGGAGAAGAAAGCATAGAAGGTGTTATCATTGGTTGTGTTAGTGATGGATCCTCGCCCCAGAGATCTTATGAAGACTCTGGTGGTGCATGTGTGTGATAGGGCCCCACATAAGCGCCAAAGTCATAGAGATGTCATGGAAGTGATAAGCAAAGATGCGAAACCCTTTCTTGTTGGTGAAGTTATGAGGTTGGATGAGGTGACTAGACTCTAGGTGATGTTCACACCTTACCGTGCTAGTTTGTGTTTGACGCACTGTTGTTTATAAATTTGATATCGGAGCAGCCATTATACTTTCAAAGAGATATAAGCTGCTGTTTATGAATTCTGAAGATAAAGGATCAAAATGTTGTTTCTTGCTGGAGTAGATTCAGGCATGATTTGGAACTTGGAAGATCTGAATGATGCCTAAGGCATCATGAGACTCTATATAGCTGGAAGACATATCAGGAGCTTATCAAAGCAGTCACAGTTTGCATTTTGGGAAGGGTGGATGGAGAAATGATAGATGTTTTATATGAAGAATGAATGAAGAAGAGAAACCTTTTAGTGTTTGAAGTCCGAATGCTTATCGTTTTTGGTTTTAGGTGTAATCTAGTTGTAAAATGATATATATATATTGTAATGATTTTGTTATTTCCATACATAGGTTGGGGTGAGTAGATGTTTGTACTTTCTACAGATTAAGCTCCCATTTGGTGTTACTTACTTATGCGCTTGAGTGGAGCATTGTTTTGTTTTTAGTGACATGACATGATTGAAATGTCACTGCACAACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTAGAGTTTGGAACCCCTTGCCAGCGAAAGCAAAGGGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGCTTGCCTAGTGCGGGTTGCCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCTGTGCGCACCCAAAAGGGTAGCAGTTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAATGTCACTGCACAACTAGTACGATTTAGAAGTTTTATGATTCACTAGTCGTGAATGCTCTCTACAACAACAAACCAAATATGAGGCATCATACCCTAGGCAAATCCTGAATCAGGCAAAGATGGGAAATGTACTGCGTATGTAAGGAAATAAGCATTAGACTCTACTGATGCACTTTGAAGCCGTGTGGTTTAGATCCAAAGTGGACAATATCACCAGTGGGCTGGGCTAGTTGCCTAATAGATGAAAACCCTGTAACTCCTTTCCAATTGGATTTCTTCTCAGTTCAATATCTTTGTCTCCAATGTGTTGCCTACCATGTTGGCTTCTTTTCTAGCAAAAGCTGCCTGTTCTGGAAGATTTTATGCAACCAACTTATTAATGGCCTTAGTCTGTAGGAAGATGAATAGAATATGCTTTATTATATATGTTATGGAGACTAAACGAAGAAAAAAGAGGAGACTTAGAAGGATATGATAAACGCTAATATGAACAAGTGAACTTCTGGAAGCCTTACGCCTGTGGCAGCCGCTTACAAGAATACAATTTGGAAAAAGTATTTGTTATCTTTGGGAATTCAACTGTGTATGTAGTTGAAAATTGGAAATAGTAAGAGAACAAAAAACTGGTCTGATCATCTTGGGAGATGCCAAATCAAAATTCATTTCCTATTTTATGTATTGCATGGTAACAGATTGTTATAAAGATTTACTCTTCTAGAAGAATTTTTAATGATCAGGAGGTGGATGAAGCTTGTGAAACATTGAATTTATTAAGGCCAATTAAACAGGATGAGAACAACAAACATAGGTAAATTTTGGTTGGCGGGTAATCATGGTGTATTTTTACCTTACCTTCTTAGGAAAATAAGTAATAGTGGTGCATTCTCTGTGCAAGTTGCTACAAAATCTAGCTGAAAATTGGAAAGTTGAGTGGCCATGGGAAGTGATTTGGAAAACAAAAGCTCTTCCAAAGAGGCTTGTTTTTGGTTGTTTGGCTACAAATAATGCTTGCCTAACGTTGGACACTTCACAAAGAAGTGGAATTTCATCCTGTAGCAAATGTAATGTTTTGTTTGTGAAATAGCAGGGGAAACCACTGATTCTTCTACTGCATTTTAACTAAACCCGACAATTTTGGACATCATTTCTGTATATTTTTTGGGTGTAGTACGTTATGCCCTAGGATGTCAAGAATCTAATGTCAAGCTGGCAGGAATAGAGCATTGGGAACAATCTCAAACGAATTTGTTGGACTTCCCCATAATGTATCGCGTGGAATATTTGGCTGGAAAGAGATGAGAGATGTTCCGAAGAAAAGAATCTACATTTATCTCTAGTTGAATCTGAATGTATTCATAGTTTGTGCCTCCGGTGCACCAACACCAGATGCAGAAACTGGAACCAGAGGTGGACCCACATGGAAGGGTGATGGGTCATAGAACCCTGTTAACTTCGGAAAAGATCTTGTATATGTGTTATACCTTGATAAATGATCATATATCTTGTTAGGTACCAAGAGACACAAATGTTGATCAGGTGCACTGGTCCAACTAGTTGCTTAGTCCCTCTGCGCAAGTGTGATCACCAGTGTTCGTTGCATTCTTCTTGTCATTCTTTTTTTTTTAATTTTTTTTTTAAAAAGCATATAAAATGCGTACGCAGCGAGTTTCAAAGAGGAGTTTAATATGTAAAGTGGATTCACATCCATCAAACCGCAGGATGAGCCACTGTTTTTCCCGTTTGATATTTATCAATCCAACTACATCAGGTTTTTTTGTGCGAAATGAAATTTTCGATGAAGGGTGTCGCATGACACTGCTTCCACTAATGTGCATCCGCCTCTGGTGGTGCCGCCGTCATGTTCAAATCCTGGGTCCGCATGATCATCTTTTTGGTTTTTGAACTCCACGATGGCAAAGATATAATGAAGTCATTGTGATTGTCTTTTTCTGTACACTTCTGCAATATTTTCTTGGTACTATCTTAAATAAAATCATTTTTACATTATACCTAAAAAAGAGTATGTGTGTTGCATGTGCAACAACTTTCTTGGTGGAAGTTAGTTCTCTACTGTAAGGGTGTATTAGGTTTGGATTCTGGATTCTGTAGGATGGTTTGCTTTAAAATACAAGCTCTTTCCTCTTCTAATTAGATTATCAATTGGATACATCAGTTTGGTGTGGGATGGTTTTATGGAGGATAGTCTTCTTTGACATTTAAGCCTTTCTTTTTTGAAAACTCAATTCAGCCTTTTCTTTTTCTACCTATATGTACACACTTTTTATAGATAGGTATAGTGTCAACCTTATTGAAAATACCTGCATAAAGTGAATGCCAGGAAAGATTACGACCAAAAGGATGAGCCATTGCAAGTTATTTCATGCACTTAGAAGTCAACAATGGTCAAGCTGTCATTTACATCTTAAAGGGCCATGTTGCACCAAAGCCTAAGCAAAATGTACAATTGCACCAAGAATATAATCTTCTTTTCCTTGAAAAATCTGTGGTTGCAGTAAAATTGTGCACCAGAAAGAATAGGAGCACCACTTATACCTAGAATGTTGAAGACCATATCTCTAAACTGAGAATTATACTTGCGGTGAAGAACGAAGTGGTTAATGTTCTCTTCCTTTTCTTGCAAAGACAACATCTGTTGCTCAGCAGAACCGCTTTTCTGTTAATTGTTAGAAGGAAGATAAGCCTCTTTAATATCAACCAAATGATATTTCACTTTGTATGAAGCTTTACTCAACCAAATGGTTTTCCAGGGCCACAGAGGAATAGGTGCTGGTTTTTCCAACCGAGTGTAGCAGCTTCTAACGATGAAGGCATCTATAAAGGTAAAATTTTTCTCTTGGATTGGTCCTACAGTGTATTAGACCCATTTTTCACATGCATTAAATAGTGACATAGTGTATGTAGACAATGGGTCTATACACTGTTAGAACCCATCTTCCGTCCAAGAGAAAGATTTTACTTTTTTCCAATTCGATGGTTTCTCTTCACACCCTTTTTTGTAGTATTTCATCCCAAATAGAAATAGAATTTGCTTTAGCCCCAAGAGGAAGTCCAAAAATATATGGTTGGCAAATAATCAATGTTACATCCCAAAGTTTCTTCTAGATGGTTAATATTCTGAATCACTTTCTCAGGAAAACGACTATTTTTGGAGTAGTTGATTGCTTATTTCTACATTCTTTTGGTAGTTAAGTTGGTAAAATATGGCCATAAATGATGTAATTCTGTTTAACAATCTAGTAGAAGCTTTACCAGAATAATAATTAATTTTGTTGGATTCTCATGATGTTAAGTGCAAGTTTAGTTTTAGTTGGTTATATCTGCAAAATGTCTTCCCGTGTTAATGTTATCCATTCATAAATGTGTTGCCAAATCAGGTGTAGAACTTAATAAACCTGAGGTCAATTATGTTATTGTTGAGTCTCATATCTCATCAATTCTGAGAAGTGCAATACAGAGTGGTGTTTACTTTTCACTCTTGATGAGCAGGTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTATTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTTGTAAGTATTTCCTCTTTAATTGGATGGCATGAAAAATCTGCTAATATACGTCTGTGAACTGGTATTTTTCAGAAGAACTTAGTTTCAACACTGTTGTCTGAGTTTCTCAAGAATGACACATATCATATATCCTTTTTATTGCACAGTTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAGGTATGCTTAGATTTATCATTTTCTGCTATTTTACAGGTTTTAGTTTCCTTGTAAGAAGAGCAAGGATTGTAGTTTGGTTTATGTGTAAACATCTTTTGGTTTCAAGCACAATCTTTGTGCTGAAGATTCATATAATATACCAATATGTTAAACTTCTAAAAAAGGGGAAATAATTCGTAATCAAAAAGAATATTGTGTAGTATTGAAAAATTTAAGAAATTATAGCTCTATCCACTATCCAGAAACTGAAGATGAAGGGCCTTGCCCTTTTCTATTGTTGGTGTATAAACATGAATATATAGAAGACAGAGAATCTTCTATTGATGTTCTAAGATCTGTAAGATGGTTATAGCTTAGTACAGCTTCCTATATCCCCTGTAAGTATGGATAGGTGCAGTTTTTATGCAGCAAATAGTCATACAAAAAATGTTACCCTCTTAAAGAAAATAATGATTAAGAAATAGTTGCTGATACATATTTCTATTAGAGCTCTAAAAATTTGTTGTAGCCTGTAAGTTGTTTAAATGTGTAGTTGAAACTAGAAATTCGCTATGTTACATGATTATTGACGTGATTTGCAGGAATTTTATGCAGATTTTGTTGCGTTGGACCCTTACCATTTCACGTTAAATATGGCCGCAAACCACATGTATATGCTC</genome_strand>
        <mrna_strand>AAACCAATTTTTTCCACTGAATTCACCAGATCAAATCCTCTGCATATTTTTGTATTGTGATTGCTGAAATCATACAAGGATTTTTAAAAAA-ATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATGTTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCCTCTACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAGGAATCCATGTCACATCTTAAAGCAGTTTATTTTTTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTT..................................................................................................................................................TTTTCTCCAATATTTTGAAAGATACTCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTTATGCAGATTTTGTTGCATTGGACGCTTACCATTTCACGTTAAATATTGCCGCAAACCACATGTATATGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E463906" ref_strand="+" ref_description="SGN-E463906 [cPRO-16-G18]">
      <seq>agatctgaaacaattttttccactgaattcaccagatcaaatcctctgcatatttttgtattgtgattgctgaaattatacaaggattttaaaaaaaatggtacttgtagcagcggtgagggactatatcaatcgcatgttgcaagacatttctgggatgaaagtcctcattcttgattcctctacggttagttctgttagtgttgtgtactctcagtcagagcttctgaagaaggaggtgttcctggtggagctggtagattctattgccatgtccaaggaatccatgtcacatcttaaagcagtttatttttttgaggccaacatcagagaatatccagcatatgcgtcgtcaactagctaagccacgatttggagaatatcacctttttttctcccatattttgaaagatactcaacttcatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="32381" stop="25890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32081" g_stop="31894" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.389" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26577" g_stop="26376" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="390" r_length="203" r_score="0.980"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26375" i_stop="26230" i_length="146">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.781" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26229" g_stop="26190" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="430" r_length="40" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E463906" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E463906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32081" e_stop="31894"/>
          <exon e_start="26577" e_stop="26376"/>
          <exon e_start="26229" e_stop="26190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACGGTTTGTTCTTTTCTTTCCAATTTAAAGAAACCCTTTTGTCTGCTTCTTTGTTTGTGCATATGTGGTTTGTAAATTATTAATTTTTGTGATGATAGTGAATGTTACATTGAGGTTGATGAGGGTTGTTGTCTGATCTGATAATGGGTAAGTGTGGGGGGATAATTCAAGTTCAGTGCAATATAACTTCTTAAATGTCGTCTTTTTGAGTGATAAATCCTGTGATCTGATGCTTTTTTTGTTTGAGTTAATATGTAATTACCAATCAACAACAACAATATAGTCAGTGAAATTCCAGTAAGTGGGGTTTGGGGAAGGTAGAGCGTATGCAGACAACTAGCTTGAGGAGGTAGAAAGGCAGTTTTTGAAAGACCTCGGCTCAAGTGCATCAAAACCAACATGTAGTTACCAAAGAAAGAAAAAAAGAACTCTTGAGCTTCAATCAGTTTATCAAACAGTCAACTACTTTTATATTAGTTGGGTTAGCTAAGTGAATCATTTGTACCCATTCTGTATCTATTGAGCTTTGTTTCATTTTGTACTAAACATTGTCTTTTAAGACAACTTAGGAGTTTTTTAAAGACCAGAATTCTCTGAATAGCATCCTTATAAAGATATATAGGTCTAACCAAGAATTGTTAGCAATGTGGTCAATGAAACACTAAAGGAAAATGGAAGTGCTCATTGCTGAGGCTACATTAACAATTTGATCATTGAGGATATGGGGTAGATTTGAGATACAGACTAGTATTAATAAATTCCTAACTCATCAGATATTTGCTTAATACATCTGAAAAAGGAGAAGAAAGCATAGAAGGTGTTATCATTGGTTGTGTTAGTGATGGATCCTCGCCCCAGAGATCTTATGAAGACTCTGGTGGTGCATGTGTGTGATAGGGCCCCACATAAGCGCCAAAGTCATAGAGATGTCATGGAAGTGATAAGCAAAGATGCGAAACCCTTTCTTGTTGGTGAAGTTATGAGGTTGGATGAGGTGACTAGACTCTAGGTGATGTTCACACCTTACCGTGCTAGTTTGTGTTTGACGCACTGTTGTTTATAAATTTGATATCGGAGCAGCCATTATACTTTCAAAGAGATATAAGCTGCTGTTTATGAATTCTGAAGATAAAGGATCAAAATGTTGTTTCTTGCTGGAGTAGATTCAGGCATGATTTGGAACTTGGAAGATCTGAATGATGCCTAAGGCATCATGAGACTCTATATAGCTGGAAGACATATCAGGAGCTTATCAAAGCAGTCACAGTTTGCATTTTGGGAAGGGTGGATGGAGAAATGATAGATGTTTTATATGAAGAATGAATGAAGAAGAGAAACCTTTTAGTGTTTGAAGTCCGAATGCTTATCGTTTTTGGTTTTAGGTGTAATCTAGTTGTAAAATGATATATATATATTGTAATGATTTTGTTATTTCCATACATAGGTTGGGGTGAGTAGATGTTTGTACTTTCTACAGATTAAGCTCCCATTTGGTGTTACTTACTTATGCGCTTGAGTGGAGCATTGTTTTGTTTTTAGTGACATGACATGATTGAAATGTCACTGCACAACCCTTCGGGGTGGCCCAGTGGTTTGAGCTTGGGACTTCCATGTTGGAGGTCTAGAGTTTGGAACCCCTTGCCAGCGAAAGCAAAGGGTTTGCCTTCTGGGTCGAGCTCGTCGCACCAGGCTTGCCTAGTGCGGGTTGCCTCTCCTATGTGGTTTGCGAGCTATTGCATAGGAGCGGGGTTTTACCTGTGCGCACCCAAAAGGGTAGCAGTTGCGGGTTTCCCTTGTCGTTAAAAAAAAAAATGTCACTGCACAACTAGTACGATTTAGAAGTTTTATGATTCACTAGTCGTGAATGCTCTCTACAACAACAAACCAAATATGAGGCATCATACCCTAGGCAAATCCTGAATCAGGCAAAGATGGGAAATGTACTGCGTATGTAAGGAAATAAGCATTAGACTCTACTGATGCACTTTGAAGCCGTGTGGTTTAGATCCAAAGTGGACAATATCACCAGTGGGCTGGGCTAGTTGCCTAATAGATGAAAACCCTGTAACTCCTTTCCAATTGGATTTCTTCTCAGTTCAATATCTTTGTCTCCAATGTGTTGCCTACCATGTTGGCTTCTTTTCTAGCAAAAGCTGCCTGTTCTGGAAGATTTTATGCAACCAACTTATTAATGGCCTTAGTCTGTAGGAAGATGAATAGAATATGCTTTATTATATATGTTATGGAGACTAAACGAAGAAAAAAGAGGAGACTTAGAAGGATATGATAAACGCTAATATGAACAAGTGAACTTCTGGAAGCCTTACGCCTGTGGCAGCCGCTTACAAGAATACAATTTGGAAAAAGTATTTGTTATCTTTGGGAATTCAACTGTGTATGTAGTTGAAAATTGGAAATAGTAAGAGAACAAAAAACTGGTCTGATCATCTTGGGAGATGCCAAATCAAAATTCATTTCCTATTTTATGTATTGCATGGTAACAGATTGTTATAAAGATTTACTCTTCTAGAAGAATTTTTAATGATCAGGAGGTGGATGAAGCTTGTGAAACATTGAATTTATTAAGGCCAATTAAACAGGATGAGAACAACAAACATAGGTAAATTTTGGTTGGCGGGTAATCATGGTGTATTTTTACCTTACCTTCTTAGGAAAATAAGTAATAGTGGTGCATTCTCTGTGCAAGTTGCTACAAAATCTAGCTGAAAATTGGAAAGTTGAGTGGCCATGGGAAGTGATTTGGAAAACAAAAGCTCTTCCAAAGAGGCTTGTTTTTGGTTGTTTGGCTACAAATAATGCTTGCCTAACGTTGGACACTTCACAAAGAAGTGGAATTTCATCCTGTAGCAAATGTAATGTTTTGTTTGTGAAATAGCAGGGGAAACCACTGATTCTTCTACTGCATTTTAACTAAACCCGACAATTTTGGACATCATTTCTGTATATTTTTTGGGTGTAGTACGTTATGCCCTAGGATGTCAAGAATCTAATGTCAAGCTGGCAGGAATAGAGCATTGGGAACAATCTCAAACGAATTTGTTGGACTTCCCCATAATGTATCGCGTGGAATATTTGGCTGGAAAGAGATGAGAGATGTTCCGAAGAAAAGAATCTACATTTATCTCTAGTTGAATCTGAATGTATTCATAGTTTGTGCCTCCGGTGCACCAACACCAGATGCAGAAACTGGAACCAGAGGTGGACCCACATGGAAGGGTGATGGGTCATAGAACCCTGTTAACTTCGGAAAAGATCTTGTATATGTGTTATACCTTGATAAATGATCATATATCTTGTTAGGTACCAAGAGACACAAATGTTGATCAGGTGCACTGGTCCAACTAGTTGCTTAGTCCCTCTGCGCAAGTGTGATCACCAGTGTTCGTTGCATTCTTCTTGTCATTCTTTTTTTTTTAATTTTTTTTTTAAAAAGCATATAAAATGCGTACGCAGCGAGTTTCAAAGAGGAGTTTAATATGTAAAGTGGATTCACATCCATCAAACCGCAGGATGAGCCACTGTTTTTCCCGTTTGATATTTATCAATCCAACTACATCAGGTTTTTTTGTGCGAAATGAAATTTTCGATGAAGGGTGTCGCATGACACTGCTTCCACTAATGTGCATCCGCCTCTGGTGGTGCCGCCGTCATGTTCAAATCCTGGGTCCGCATGATCATCTTTTTGGTTTTTGAACTCCACGATGGCAAAGATATAATGAAGTCATTGTGATTGTCTTTTTCTGTACACTTCTGCAATATTTTCTTGGTACTATCTTAAATAAAATCATTTTTACATTATACCTAAAAAAGAGTATGTGTGTTGCATGTGCAACAACTTTCTTGGTGGAAGTTAGTTCTCTACTGTAAGGGTGTATTAGGTTTGGATTCTGGATTCTGTAGGATGGTTTGCTTTAAAATACAAGCTCTTTCCTCTTCTAATTAGATTATCAATTGGATACATCAGTTTGGTGTGGGATGGTTTTATGGAGGATAGTCTTCTTTGACATTTAAGCCTTTCTTTTTTGAAAACTCAATTCAGCCTTTTCTTTTTCTACCTATATGTACACACTTTTTATAGATAGGTATAGTGTCAACCTTATTGAAAATACCTGCATAAAGTGAATGCCAGGAAAGATTACGACCAAAAGGATGAGCCATTGCAAGTTATTTCATGCACTTAGAAGTCAACAATGGTCAAGCTGTCATTTACATCTTAAAGGGCCATGTTGCACCAAAGCCTAAGCAAAATGTACAATTGCACCAAGAATATAATCTTCTTTTCCTTGAAAAATCTGTGGTTGCAGTAAAATTGTGCACCAGAAAGAATAGGAGCACCACTTATACCTAGAATGTTGAAGACCATATCTCTAAACTGAGAATTATACTTGCGGTGAAGAACGAAGTGGTTAATGTTCTCTTCCTTTTCTTGCAAAGACAACATCTGTTGCTCAGCAGAACCGCTTTTCTGTTAATTGTTAGAAGGAAGATAAGCCTCTTTAATATCAACCAAATGATATTTCACTTTGTATGAAGCTTTACTCAACCAAATGGTTTTCCAGGGCCACAGAGGAATAGGTGCTGGTTTTTCCAACCGAGTGTAGCAGCTTCTAACGATGAAGGCATCTATAAAGGTAAAATTTTTCTCTTGGATTGGTCCTACAGTGTATTAGACCCATTTTTCACATGCATTAAATAGTGACATAGTGTATGTAGACAATGGGTCTATACACTGTTAGAACCCATCTTCCGTCCAAGAGAAAGATTTTACTTTTTTCCAATTCGATGGTTTCTCTTCACACCCTTTTTTGTAGTATTTCATCCCAAATAGAAATAGAATTTGCTTTAGCCCCAAGAGGAAGTCCAAAAATATATGGTTGGCAAATAATCAATGTTACATCCCAAAGTTTCTTCTAGATGGTTAATATTCTGAATCACTTTCTCAGGAAAACGACTATTTTTGGAGTAGTTGATTGCTTATTTCTACATTCTTTTGGTAGTTAAGTTGGTAAAATATGGCCATAAATGATGTAATTCTGTTTAACAATCTAGTAGAAGCTTTACCAGAATAATAATTAATTTTGTTGGATTCTCATGATGTTAAGTGCAAGTTTAGTTTTAGTTGGTTATATCTGCAAAATGTCTTCCCGTGTTAATGTTATCCATTCATAAATGTGTTGCCAAATCAGGTGTAGAACTTAATAAACCTGAGGTCAATTATGTTATTGTTGAGTCTCATATCTCATCAATTCTGAGAAGTGCAATACAGAGTGGTGTTTACTTTTCACTCTTGATGAGCAGGTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTA-TTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTTGTAAGTATTTCCTCTTTAATTGGATGGCATGAAAAATCTGCTAATATACGTCTGTGAACTGGTATTTTTCAGAAGAACTTAGTTTCAACACTGTTGTCTGAGTTTCTCAAGAATGACACATATCATATATCCTTTTTATTGCACAGTTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCT</genome_strand>
        <mrna_strand>AGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAAATCCTCTGCATATTTTTGTATTGTGATTGCTGAAATTATACAAGG-ATTTTAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATGTTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCCTCTACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAGGAATCCATGTCACATCTTAAAGCAGTTTATTTTTTTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTT..................................................................................................................................................TTTTCTCCCATATTTTGAAAGATACTCAACTTCATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E745984" ref_strand="+" ref_description="SGN-E745984 [GI|47105418]">
      <seq>caatatttctttcgccaatcgatctgcttcagagcattcagcaatcgatcggctttaatccaggaaatggctgctgagcctacaaaagaacatattgatgttgctgagactgaacctgtggcatcatctactgataatgaagaaaagacaaaaaagaagaaaaagaagggatttttttcgatgatatggaatagtttatttaggtccaaaaaggatgattttgagaagagattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacgaggcatctcattgtactttctgtgatttttgaggttattgcagtgggttatgctatcatgacaacacgatcccttgagctgaactggaaaatgagggcattgcgagttttaccaatgtttctgttgcctggcttatccttcattacatattcagcgattggaagttttacaaggatgtgtgaacgtaaggaccagaaaactctagaaaaactacgagctgaaaggcaagccaagattgaggaactgaaagagaagacaaattactatataacgcaacagctcattcagagatatgaccccgacccagcagctaaggcagctgcagccactgtccttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagatgacactaagcataatgtccctaccgggaagagcaacggtgttgaagttgtgcaatctaatgggctgagaaataggaagcaggccaggtctagtagtccagagagtgctgtaatagatcatcctggtgcagaaatgcttcaacaggcacagcttgaaggttctgatatgatgcagcatcagcaaacagttgttgagcattacaatccaacaggttccagcacacaagatggaggatggattgcacgaattgcagcattgcttgtgggagaggatccaacccagtcatatgcactcatctgtggcaattgccatatgcacaatgggttagccaggaaagaggacttcccatacataacctactattgccctcattgccatgccctaaataggcctaagcagcttgatgatcgtgtctctggtacaagtacccctaaccttggttccacaacttctttggctgatgttgattcggtcaaacaagttagtggatctactccggataaaatacccgcatcagcaagtggcagtcctgtagcagctccagtggaaacagaaggtgataacatagtgtccagtgcttctaacagctagtagatggggagttttgaatagagtcgtgcaggcgagtgctttttctccctatatatgtgtagcggggttttatttttttcttttttcttggtaatgtgtaactctctgttgtatacatagtagaaaacatattcaacgattcatacggtagcttccttgaaacttttctacagacgcaatatacctcaattttcttttgtttgagataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="42291" stop="33877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41991" g_stop="41929" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41030" g_stop="40752" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="342" r_length="279" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39274" g_stop="39130" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="487" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39129" i_stop="35531" i_length="3599">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35530" g_stop="35421" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="597" r_length="110" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249">
            <donor d_prob="0.728" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35171" g_stop="34754" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="1015" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="34655" g_stop="34180" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1016" r_stop="1491" r_length="476" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1492" polyA_stop="1508"/>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E745984" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1491</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41991" e_stop="41929"/>
          <exon e_start="41030" e_stop="40752"/>
          <exon e_start="39274" e_stop="39130"/>
          <exon e_start="35530" e_stop="35421"/>
          <exon e_start="35171" e_stop="34754"/>
          <exon e_start="34655" e_stop="34180"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAGGTATAAACTCATACGTTGAATTTGGTTATTGATCGTTCCACTGATAATTTTCTGTTGATTTTCGCTTTGAAATGATATATCTAATGACTTGTGAGTTATTGATTATGTATTTTGTTTTCCTGATTCATTTATTGTTCATCAAATTTGTTTGATGATTTTGAAATACGGAGCAGCTAGTTGATTTTTGGAGTAGTTACATAGTATTGCTGGAGCTAAAGTGATAAGTCTCCTTATTGCTTCTGAAGTTGTTGAATTGGGTTTGTGATAGTGTTGTTTTGGAAATTTAGGCATTATAGTTAGTCTTGAGCTGTAAGAAGAAGCATAATTTTGAGGTATATTACTGTATTCAATGTTGTACTCTCTCTATTCCATATTAACTGAATTTCTGAGGTTTTTTTCACTATTCAAAATAATTGAATTGTTCAAAGTTCAAGATGCATGTTTAAATTTGCCCTTTCATTATTGCAGTTTTATGTTTTCTAGGAGATAAATTACCCTACTTATAATTTTATAAAAGTAATAGTGAAAATTATGTGTTTGAATATGTGTCCATTGCCTTACAAGTTCAGTTAATATGGAATAAAGGGAGTACCGAATAATAAGTCATTTTATGGCAGCAGAAAAAAGTTTCTAATGAAGGAAGAGAGAGCAAAGGTGTTATGGGATGATGCTTAAAAATGCATTCTTGTATCTGTAAAGTCAAGTAGAAAGTGTATATTTAAGATAAATACATAATCTGAATTTTATTGATGGTGTTTAACGTGAATAGTATGGATGTTAAATGGGCAATTTTATTTGTATCATTAACTTTGATGCTTCTACAGGGCTATTGCTTTTTTCTCTCATTTGTTGCCGTTCTCCTTAAATCATTTGAATATAGATGCTCTTTAACTTGTAGGAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGTGTAAGTAATTAATGGTTGTTAGCTAACCGAAGTTCACATACTACTCATTTCATTGGGATGTCTTACATACTCATTTACCCCTTTTCCTTACTGTCTCTGCCTTTTGATGCTGAATGTGAAATAGAACTTCGATTTTTATGGCAAAATGATAATTGCCTGAGAGATGACCAGCTTTTCTGGGGTTGTTTTAACTTGGTTAAATAAATGTGGTATACATGATAGAGCCAGTGTCGCTCAAGTAACAAATTAAGCATGGATGATTAATTCCCTGTTGCTAACATGTAATGCCTTGATTAAGTAACATAATTTGGTGGAGGGTGGGGTGTATGTAACATAAGTAGCGTGTGAGAACAAAAAAAGTAAGTCCAAGTCAGTATATCTTTTTCATTTACAACAACAACATACCAGTGTGGTCCAACCAGTGGGGTTTGGGGAGGGTGGGGTGTATGTAAACCTTACTCCTACTTATGTGGGGTTAGAGGTTGTTTTCAATAGACTTTCGGCTCGTTTGAAAAAGATGCAAGACTAAATAACTATGGTGGATGATTGAAGAAAGAGAAGTACTACAACAACATACCTAGTATGATCCCACAAGTAGGGTTCTGGGGAAGAAAGAAAAATACTAACAACAGAATAGTAAAAATAAGCAAAGTAATAACAATAGTAATCAAATTGGAGAAACAAGATAATGCTAACATAATAATGAAAATAATACCGGGTAAGAGAGCTGATTGCTTCTATCCAATTACTAAAATGGGACAAGGAAGTCAGCAGACATCAGTCTCTAGTGATGAACCAGGATATCTTTAAGAGTGGTAGTCACATCTTCCAACATCTGACAGGTAATTCCATTATACCTGCAAAAGTTCAGATTGCTCAAATAAAGCAAGACTATCACTTGATGAAAAGGGAGGAAGATCATGTATTAAACTGCAAACTGGCCAAGTCCTTTCAAGTTAAAGACTCCCGGACAGAGTTCTTCTGGATGTGTTTCCTCCCATAAGAAAGAAAAGATTACTAAGAATTTCCTTTTATATTTTCCTTTTCTTACATTTTCTTTCTTTTATTCTTTATTTTCTTTTTCTTCCTTTCCCATGCTACTACCTTCTCCACCAGTACCACCACCTTCCCTATTAATGCTAATCTTCCGTTACCCTTTGGGTTAGCACAATTTTAAACCCCCGCTCCTGTGCAATAGCTAGCAAACCACATAGGAGAGGGTACCAACATTAGGCAAGTCCGATGCGACGAGCTTGACCCAGATGGCAAACCCCTTTCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCAAAGGGTATTTTAAACCCTATTTATGTTCAAAACTAAACCAATGAAGCAACCATTTTTAGTTTGGGAACGGAGGAGAGGAACTGACTGGTGACCTCCATGGAATGGAGGAAAGAAATTGCTGGTTAATCGTCAGATTTCATTCTAGTATGTCAGGTTATTTTTCGATGGGAGTTCAGGTTAATTATTGTATTTGCTGGCTTGGAAGTTTTCTAGTAAAACAAGTTGTAAAAGTGTTGTTCATCCAATTTTGTTCAAGTTTTTCGTCCTTATTGCTTGTGACTCACTGTACAACTGAGCTTTGAGATTATTTTTTCTTTTCTAGGTAGAGTATCAAAGATTTTGTTGGTTCTACTCCCAAGTATGTTTATTTCGCTAAACCAATTATGTAAATGATTGTTTCTGTTTTCTACACATGCTACTGATGGGTATTTCAGTGGTGAAGTGGTGGTTTGGGTGGTAAACGGTTGGAGGAAGAAAATGTTGGAAAGAAAGAAAGAACTGCAAGAAGACAGATAGAAGGGCATAAGGTGAATAACGAGTCACAGAGAGAGGCAGCTAACAGCGGAAGAAAGAGAGAGGTTGCTGACAGCAGAAGTAAGAGAGGGAAAAAATATAAACTAATAGACATAAATAAGAGGAAAAATGGAAATAGAAGGTTATGAAGTTGGCATGTGAAAACAAGGATTTGCATGAAAAGCACTTGCGTTCTTAATACTGGGATTGACCCAAAAATAGGGTAATATACAAAATCTAGTGTCTTTTTGGACATCAGGGATTATCTTAGGAAAGCTGTGTGTATTTTTCCAAAAAAAAAAAGGTGAGAGGGAAGGAGAACCAAGCAAACAATAGACAAGAAGGAAAATAAAGGAAAAGGGGATGAAAATTGAAAACAACAAGGCAGAAGCTAGAGTACATTTTTCAGAGCTGCCGTCGGGTTTGACTTAATGGCTGATCTTTTTAAAAAAGTATAAAGTGGTCTAAGGTTAGTGCGAACCAAGAAAATACACTGATTGAATCAACTTTAGAGCCAGTGTATTTTCTTATTTGGGCCACAAATCAATTTATTTTTGCAAGAAACAAGGTTTATCTTTAGTTATAAACAAAGCAAAGAAAAATTCAATAAATTGGACTAACCTTGACCACTTAACACAATTTAAAAGAGACAAGTTTATATTGAGAACACTTGAAGTAATTAAATAGATTGATACTAGCCACATTGTTAACCAGCAAAAAATATATAACTAATTCTAAGTAGGTATATGTATTTACATTCATTTGCAGCACACCTTCTTTCATCCATATTCTTTTTCTCCAAAACATATTGATATCTCCAAATCAGAAAATTTAAGAGACGACGAATCCAACCTCTACAACCATAGGCCATTGAATACTTGCACCTGTGTCCGTGGATCCATGCAATATAGGTTTCATGAATTCATTCGCTGTGATCCTTGTAGAATGCATGCTGTCATTTCCCTTTTTGCTTAAGCTTGTGTGGTATTGGATATTGCAGTTGTGTGCAAACCCTTCTTTCTAGCCTACAGAAATTTCTTTTGGACATTTTCTTTTGGGGGTGTGGGGTGTGGGGTTTGGGGTTGGGGGGGGGGGTATGGACTACTATAGTTGAAGCAGACATTGTTGTGTGGGAAATTATGATGATGAAAAGGAACCATGAAGATACTGAATTGATTGGTAACTGGACTGTAGCAGAAAGTTAGTGGCTGTAGAAGCAGAGGAAACTCTGCTTTTTAAAGTTACTTACAACCTAAAGAAAAACTTATGTAAAATTCAGATGAAAACCTGATTATTTTGATGAAGCTATAATGGCATATCAGAGCTCATAGATTTGATTTTGCACGTATTCAAATGGTTGAGAGTATATTTGATTTTTCTTTCTGATTAATGTTAGGCTCTCAAACAACATGAAATTGTCCATGACCTGTATTTTAAGGTCACCTTGTATGATGTTATTGAAAGATACAACTTACCAATCCCACAAGTGGGAAAAGGGCAGTCTGGTGCACAAAGCATCCAGTGTTTGCTGAGATGTTTTTGAAAATAGTATGCAAAAATTTATATCTTACTTCATTCCAGGGAAGTTTCCTTTTGGCTTTTAAAGATCTTCCTATTTGTCTATTCAGCCTCGTGGCTTTCACTGTATTTGACAGGTTGTCCTTGGTCATGATGGCCTTAGAAGAATAGTGTTTCTTGACTCACTTATACGTTATCCTTTATGTGTTCGTGCAGGTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATGGTAAGAACTAAAGAATTCAATGATAATAAAAACCCAATCAGTGGAGCAGATTCACATAAAGAATGGTGAATAAGCAATCACATTACTATCATTTGCAGGGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACAAGTTAGTGGATCTACTCCGGATAAAATACCCGCATCAGCAAGTGGCAGTCCTGTAGCAGCTCCAGTGGAAACAGAAGGTGATAACATAGTGTCCAGTGCTTCTAACAGCTAGTAGATGGGGAGTTTTGAATAGAGTCGTGCAGGCGAGTGCTTTTTCTCCCTATATATGTGTAGCGGGGTTTTATTTTTTTCTTTTTTCTTGGTAATGTGTAACTCTCTGTTGTATACATAGTAGAAAACATATTCAACGATTCATACGGTAGCTTCCTTGAAACTTTTCTACAGACGCAATATACCTCAATTTTCTTTTGTTTGAGAA</genome_strand>
        <mrna_strand>CAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAG.........................................................................................................................................................................................................................................................AGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG..................................................................................................GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACAAGTTAGTGGATCTACTCCGGATAAAATACCCGCATCAGCAAGTGGCAGTCCTGTAGCAGCTCCAGTGGAAACAGAAGGTGATAACATAGTGTCCAGTGCTTCTAACAGCTAGTAGATGGGGAGTTTTGAATAGAGTCGTGCAGGCGAGTGCTTTTTCTCCCTATATATGTGTAGCGGGGTTTTATTTTTTTCTTTTTTCTTGGTAATGTGTAACTCTCTGTTGTATACATAGTAGAAAACATATTCAACGATTCATACGGTAGCTTCCTTGAAACTTTTCTACAGACGCAATATACCTCAATTTTCTTTTGTTTGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E710824" ref_strand="+" ref_description="SGN-E710824 [FA56DF01]">
      <seq>agaaaaactacgagctgaaaggcaagccaagattgaggaactgaaagagaagacaaattactatataacgcaacagctcattcagagatatgaccccgacccagcagctaaggcagctgcagccactgtccttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagatgacactaagcataatgtccctaccgggaagagcaacggtgttgaagttgtgcaatctaatgggctgagaaataggaagcaggccaggtctagtagtccagagagtgctgtaatagatcatcctggtgcagaaatgcttcaacaggcacagcttgaaggttctgatatgatgcagcatcagcaaacagttgttgagcattacaatccaacaggttccagcacacaagatggaggatggattgcacgaattgcagcattgcttgtgggagaggatccaacccagtcatatgcactcatctgtggcaattgccatatgcacaatgggttagccaggaaagaggacttcccatacataacctactattgccctcattgccatgccctaaataggcctaagcagcttgatgatcgtgtctctggtacaagtacccctaaccttggttccacaacttctttggctgatgttgattcggtcaaaccagttactggatctactccggataaaatacccgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="35805" stop="34163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35505" g_stop="35421" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249">
            <donor d_prob="0.728" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35171" g_stop="34754" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="503" r_length="418" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34463" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="696" r_length="193" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E710824" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35505" e_stop="35421"/>
          <exon e_start="35171" e_stop="34754"/>
          <exon e_start="34655" e_stop="34463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATGGTAAGAACTAAAGAATTCAATGATAATAAAAACCCAATCAGTGGAGCAGATTCACATAAAGAATGGTGAATAAGCAATCACATTACTATCATTTGCAGGGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACAAGTTAGTGGATCTACTCCGGATAAAATACCCGCATC</genome_strand>
        <mrna_strand>AGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAG.........................................................................................................................................................................................................................................................AGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG..................................................................................................GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACCAGTTACTGGATCTACTCCGGATAAAATACCCGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E585832" ref_strand="+" ref_description="SGN-E585832 [68296]">
      <seq>ttaagtttacaaggatgtgtgaacgtaaggaccagaaaactctagaaaaactacgagctgaaaggcaagccaagattgaggaactcaaagagaagacaaattactatataacacaacagctcattcagagatatgaccccgagccagcagctaaggcagctgcagccactgtgcttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagaggacactaagcataatgtccctactgggaagagcaacgatgttgaagttgtgcaatctactgggctgagaaataggaagcaggcaaggtctagtagtccagagagtgctgtaatagatcatcctggtgcggaaatgcgtcaacaggcacagcttgaaggttctgatatgatgcagaatcagcaaacggttgttgagcattacaatccgacaggttccagcacacaagatggaggatggattgcacgaattgcagcgttgcttgtgggagaggatccaacccagtcttatgcactcatctgtggcaattgccatatgcacaatgggttggccaggaaagaggacttcccttatataacctactattgccctcattgccatgccctgaataggcctaagcaacttgactgatcgtgtctctggtaccagtacccctaaccttggttccacaacatctttggctgatgtcgattcggtcaaaccaagtcggtggatctactccggataagatacccgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="35846" stop="34165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35530" g_stop="35421" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="128" r_length="110" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249">
            <donor d_prob="0.728" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35171" g_stop="34754" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="546" r_length="418" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98">
            <donor d_prob="0.885" d_score="0.98"/>
            <acceptor a_prob="0.937" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34655" g_stop="34465" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="739" r_length="193" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E585832" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E585832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35530" e_stop="35421"/>
          <exon e_start="35171" e_stop="34754"/>
          <exon e_start="34655" e_stop="34465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATGGTAAGAACTAAAGAATTCAATGATAATAAAAACCCAATCAGTGGAGCAGATTCACATAAAGAATGGTGAATAAGCAATCACATTACTATCATTTGCAGGGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGA-TGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAA-CAAGTTAGTGGATCTACTCCGGATAAAATACCCGCA</genome_strand>
        <mrna_strand>GTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTCAAAGAGAAGACAAATTACTATATAACACAACAGCTCATTCAG.........................................................................................................................................................................................................................................................AGATATGACCCCGAGCCAGCAGCTAAGGCAGCTGCAGCCACTGTGCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGAGGACACTAAGCATAATGTCCCTACTGGGAAGAGCAACGATGTTGAAGTTGTGCAATCTACTGGGCTGAGAAATAGGAAGCAGGCAAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCGGAAATGCGTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGAATCAGCAAACGGTTGTTGAGCATTACAATCCGACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCGTTGCTTGTGGGAGAGGATCCAACCCAGTCTTATGCACTCATCTGTGGCAATTGCCATATGCACAATG..................................................................................................GGTTGGCCAGGAAAGAGGACTTCCCTTATATAACCTACTATTGCCCTCATTGCCATGCCCTGAATAGGCCTAAGCAACTTGACTGATCGTGTCTCTGGTACCAGTACCCCTAACCTTGGTTCCACAACATCTTTGGCTGATGTCGATTCGGTCAAACCAAGTCGGTGGATCTACTCCGGATAAGATACCCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726782" ref_strand="+" ref_description="SGN-E726782 [LA12DC01]">
      <seq>actatataacgcaacagctcattcaggtgatagcccatatgcaaggttttgggcttatacaagtttcacatgttattaaccatgagtactgtgatcaaataatctttcttgtgttaagaaataagaaggaaaaaaagaaccatgaaattgcactctgagagacttatttagtattacatttctcactgttttgtccttgcctctatcgtcgtgaatttccaaaaaaaccttttttttaacaatttccaagcatcattgttgaatcttttgtgcagagatatgaccccgacccagcagctaaggcagctgcagccactgtccttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagatgacactaagcataatgtccctaccgggaagagcaacggtgttgaagttgtgcaatctaatgggctgagaaataggaagcaggccaggtctagtagtccagagagtgctgtaatagatcatcctggtgcagaaatgcttcaacaggcacagcttgaaggttctgatatgatgcagcatcagcaaacagttgttgagcattacaatccaacaggttccagcacacaagatggaggatggattgcacgaattgcagcattgcttgtgggagaggatccaacccagtcatatgcactcatctgtggcaattgccatatgcacaatgggttagccaggaaagaggacttcccatacataacctactattgccctcattgccatgccctaaataggcctaagcagcttgatgatcgtgtctctggtacaagtacccctaaccttggttccacaacttctttggctgatgttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="35746" stop="34209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35446" g_stop="34754" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="693" r_length="693" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98">
            <donor d_prob="0.885" d_score="1.00"/>
            <acceptor a_prob="0.937" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34655" g_stop="34509" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="694" r_stop="840" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E726782" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726782" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35446" e_stop="34754"/>
          <exon e_start="34655" e_stop="34509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATGGTAAGAACTAAAGAATTCAATGATAATAAAAACCCAATCAGTGGAGCAGATTCACATAAAGAATGGTGAATAAGCAATCACATTACTATCATTTGCAGGGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATT</genome_strand>
        <mrna_strand>ACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG..................................................................................................GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E266793" ref_strand="+" ref_description="SGN-E266793 [cLEI-7-M8]">
      <seq>gtaaggaccagaaaactctagaaaaactacgagctgaaaggcaagccaagattgaggaactgaaagagaagacaaattactatataacacaacagctcattcagagatatgaccccgacccagcagctaaggcagctgcagccactgtccttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagatgacactaagcataatgtccctaccgggaagagcaacgatgttgaagttgtgcaatctaatgggctgagaaataggaagcaggccaggtctagtagtccagagagtgctgtaatagatcatcctggtgcagaaatgcttcaacaggcacagcttgaaggttctgatatgatgcagcatcagcaaacagttgttgagcattacaatccaacaggttccagcacacaagatggaggatggattgcacgaattgcagcattgcttgtgggagaggatccaacccagtcatatgcactcatctgtggcaattgccatatgcacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="35824" stop="34453"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35524" g_stop="35421" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249">
            <donor d_prob="0.728" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35171" g_stop="34754" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="522" r_length="418" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E266793" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35524" e_stop="35421"/>
          <exon e_start="35171" e_stop="34754"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG</genome_strand>
        <mrna_strand>GTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACACAACAGCTCATTCAG.........................................................................................................................................................................................................................................................AGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGATGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689219" ref_strand="+" ref_description="SGN-E689219 [t3_tus_80_J24]">
      <seq>attcatttcaatcccaactatttattcttaccttcttctcagggccttccgatctactgtttcacctctgtttttgaattccaatatttctttcgccaatcgatctgcttcagagcattcagcaatcgatcggctttaatccagaatggctgctgagcctacaaaagaacatattgatgttgctgagactgaacctgtggcatcatctactgataatgaagaaaagacaaaaaagaagaaaaagaagggatttttttcgatgatatggaatagtttatttaggtccaaaaaggatgattttgagaagagattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacaaggcatctcattgtactttctgtgatttttgaggttattgcagtgggttatgctatcatgacaacacgatcccttgagctgaactggaaaatgagggcattgcgagttttaccaatgtttctgttgcctggcttatccttcattacatattcagcgattggaagttttacaaggatgtgtgaacgtaaggaccagaaaactctagaaaaactacgagctgaaaggcaagccaagattgaggaactgaaagagaagacaaattactatataacacaacagctcattcagagatatgaccccgacccagcagctaaggcagctgcagccactgtccttgcatccaagcttggtacagatactggcttgaaagtgtatgtgggagatgacactaagcataatgtccctaccgggaagagcaacgatgttgaagttgtgcaatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="42372" stop="34716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42072" g_stop="41929" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41030" g_stop="40752" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="421" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39274" g_stop="39130" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="566" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39129" i_stop="35531" i_length="3599">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35530" g_stop="35421" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="676" r_length="110" r_score="0.991"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249">
            <donor d_prob="0.728" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35171" g_stop="35016" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="832" r_length="156" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E689219" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42072" e_stop="41929"/>
          <exon e_start="41030" e_stop="40752"/>
          <exon e_start="39274" e_stop="39130"/>
          <exon e_start="35530" e_stop="35421"/>
          <exon e_start="35171" e_stop="35016"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTCAATCCCAACTATTTATTCTTACCTTCTTCTCAGGGCCTTCCGATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAGGTATAAACTCATACGTTGAATTTGGTTATTGATCGTTCCACTGATAATTTTCTGTTGATTTTCGCTTTGAAATGATATATCTAATGACTTGTGAGTTATTGATTATGTATTTTGTTTTCCTGATTCATTTATTGTTCATCAAATTTGTTTGATGATTTTGAAATACGGAGCAGCTAGTTGATTTTTGGAGTAGTTACATAGTATTGCTGGAGCTAAAGTGATAAGTCTCCTTATTGCTTCTGAAGTTGTTGAATTGGGTTTGTGATAGTGTTGTTTTGGAAATTTAGGCATTATAGTTAGTCTTGAGCTGTAAGAAGAAGCATAATTTTGAGGTATATTACTGTATTCAATGTTGTACTCTCTCTATTCCATATTAACTGAATTTCTGAGGTTTTTTTCACTATTCAAAATAATTGAATTGTTCAAAGTTCAAGATGCATGTTTAAATTTGCCCTTTCATTATTGCAGTTTTATGTTTTCTAGGAGATAAATTACCCTACTTATAATTTTATAAAAGTAATAGTGAAAATTATGTGTTTGAATATGTGTCCATTGCCTTACAAGTTCAGTTAATATGGAATAAAGGGAGTACCGAATAATAAGTCATTTTATGGCAGCAGAAAAAAGTTTCTAATGAAGGAAGAGAGAGCAAAGGTGTTATGGGATGATGCTTAAAAATGCATTCTTGTATCTGTAAAGTCAAGTAGAAAGTGTATATTTAAGATAAATACATAATCTGAATTTTATTGATGGTGTTTAACGTGAATAGTATGGATGTTAAATGGGCAATTTTATTTGTATCATTAACTTTGATGCTTCTACAGGGCTATTGCTTTTTTCTCTCATTTGTTGCCGTTCTCCTTAAATCATTTGAATATAGATGCTCTTTAACTTGTAGGAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGTGTAAGTAATTAATGGTTGTTAGCTAACCGAAGTTCACATACTACTCATTTCATTGGGATGTCTTACATACTCATTTACCCCTTTTCCTTACTGTCTCTGCCTTTTGATGCTGAATGTGAAATAGAACTTCGATTTTTATGGCAAAATGATAATTGCCTGAGAGATGACCAGCTTTTCTGGGGTTGTTTTAACTTGGTTAAATAAATGTGGTATACATGATAGAGCCAGTGTCGCTCAAGTAACAAATTAAGCATGGATGATTAATTCCCTGTTGCTAACATGTAATGCCTTGATTAAGTAACATAATTTGGTGGAGGGTGGGGTGTATGTAACATAAGTAGCGTGTGAGAACAAAAAAAGTAAGTCCAAGTCAGTATATCTTTTTCATTTACAACAACAACATACCAGTGTGGTCCAACCAGTGGGGTTTGGGGAGGGTGGGGTGTATGTAAACCTTACTCCTACTTATGTGGGGTTAGAGGTTGTTTTCAATAGACTTTCGGCTCGTTTGAAAAAGATGCAAGACTAAATAACTATGGTGGATGATTGAAGAAAGAGAAGTACTACAACAACATACCTAGTATGATCCCACAAGTAGGGTTCTGGGGAAGAAAGAAAAATACTAACAACAGAATAGTAAAAATAAGCAAAGTAATAACAATAGTAATCAAATTGGAGAAACAAGATAATGCTAACATAATAATGAAAATAATACCGGGTAAGAGAGCTGATTGCTTCTATCCAATTACTAAAATGGGACAAGGAAGTCAGCAGACATCAGTCTCTAGTGATGAACCAGGATATCTTTAAGAGTGGTAGTCACATCTTCCAACATCTGACAGGTAATTCCATTATACCTGCAAAAGTTCAGATTGCTCAAATAAAGCAAGACTATCACTTGATGAAAAGGGAGGAAGATCATGTATTAAACTGCAAACTGGCCAAGTCCTTTCAAGTTAAAGACTCCCGGACAGAGTTCTTCTGGATGTGTTTCCTCCCATAAGAAAGAAAAGATTACTAAGAATTTCCTTTTATATTTTCCTTTTCTTACATTTTCTTTCTTTTATTCTTTATTTTCTTTTTCTTCCTTTCCCATGCTACTACCTTCTCCACCAGTACCACCACCTTCCCTATTAATGCTAATCTTCCGTTACCCTTTGGGTTAGCACAATTTTAAACCCCCGCTCCTGTGCAATAGCTAGCAAACCACATAGGAGAGGGTACCAACATTAGGCAAGTCCGATGCGACGAGCTTGACCCAGATGGCAAACCCCTTTCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCAAAGGGTATTTTAAACCCTATTTATGTTCAAAACTAAACCAATGAAGCAACCATTTTTAGTTTGGGAACGGAGGAGAGGAACTGACTGGTGACCTCCATGGAATGGAGGAAAGAAATTGCTGGTTAATCGTCAGATTTCATTCTAGTATGTCAGGTTATTTTTCGATGGGAGTTCAGGTTAATTATTGTATTTGCTGGCTTGGAAGTTTTCTAGTAAAACAAGTTGTAAAAGTGTTGTTCATCCAATTTTGTTCAAGTTTTTCGTCCTTATTGCTTGTGACTCACTGTACAACTGAGCTTTGAGATTATTTTTTCTTTTCTAGGTAGAGTATCAAAGATTTTGTTGGTTCTACTCCCAAGTATGTTTATTTCGCTAAACCAATTATGTAAATGATTGTTTCTGTTTTCTACACATGCTACTGATGGGTATTTCAGTGGTGAAGTGGTGGTTTGGGTGGTAAACGGTTGGAGGAAGAAAATGTTGGAAAGAAAGAAAGAACTGCAAGAAGACAGATAGAAGGGCATAAGGTGAATAACGAGTCACAGAGAGAGGCAGCTAACAGCGGAAGAAAGAGAGAGGTTGCTGACAGCAGAAGTAAGAGAGGGAAAAAATATAAACTAATAGACATAAATAAGAGGAAAAATGGAAATAGAAGGTTATGAAGTTGGCATGTGAAAACAAGGATTTGCATGAAAAGCACTTGCGTTCTTAATACTGGGATTGACCCAAAAATAGGGTAATATACAAAATCTAGTGTCTTTTTGGACATCAGGGATTATCTTAGGAAAGCTGTGTGTATTTTTCCAAAAAAAAAAAGGTGAGAGGGAAGGAGAACCAAGCAAACAATAGACAAGAAGGAAAATAAAGGAAAAGGGGATGAAAATTGAAAACAACAAGGCAGAAGCTAGAGTACATTTTTCAGAGCTGCCGTCGGGTTTGACTTAATGGCTGATCTTTTTAAAAAAGTATAAAGTGGTCTAAGGTTAGTGCGAACCAAGAAAATACACTGATTGAATCAACTTTAGAGCCAGTGTATTTTCTTATTTGGGCCACAAATCAATTTATTTTTGCAAGAAACAAGGTTTATCTTTAGTTATAAACAAAGCAAAGAAAAATTCAATAAATTGGACTAACCTTGACCACTTAACACAATTTAAAAGAGACAAGTTTATATTGAGAACACTTGAAGTAATTAAATAGATTGATACTAGCCACATTGTTAACCAGCAAAAAATATATAACTAATTCTAAGTAGGTATATGTATTTACATTCATTTGCAGCACACCTTCTTTCATCCATATTCTTTTTCTCCAAAACATATTGATATCTCCAAATCAGAAAATTTAAGAGACGACGAATCCAACCTCTACAACCATAGGCCATTGAATACTTGCACCTGTGTCCGTGGATCCATGCAATATAGGTTTCATGAATTCATTCGCTGTGATCCTTGTAGAATGCATGCTGTCATTTCCCTTTTTGCTTAAGCTTGTGTGGTATTGGATATTGCAGTTGTGTGCAAACCCTTCTTTCTAGCCTACAGAAATTTCTTTTGGACATTTTCTTTTGGGGGTGTGGGGTGTGGGGTTTGGGGTTGGGGGGGGGGGTATGGACTACTATAGTTGAAGCAGACATTGTTGTGTGGGAAATTATGATGATGAAAAGGAACCATGAAGATACTGAATTGATTGGTAACTGGACTGTAGCAGAAAGTTAGTGGCTGTAGAAGCAGAGGAAACTCTGCTTTTTAAAGTTACTTACAACCTAAAGAAAAACTTATGTAAAATTCAGATGAAAACCTGATTATTTTGATGAAGCTATAATGGCATATCAGAGCTCATAGATTTGATTTTGCACGTATTCAAATGGTTGAGAGTATATTTGATTTTTCTTTCTGATTAATGTTAGGCTCTCAAACAACATGAAATTGTCCATGACCTGTATTTTAAGGTCACCTTGTATGATGTTATTGAAAGATACAACTTACCAATCCCACAAGTGGGAAAAGGGCAGTCTGGTGCACAAAGCATCCAGTGTTTGCTGAGATGTTTTTGAAAATAGTATGCAAAAATTTATATCTTACTTCATTCCAGGGAAGTTTCCTTTTGGCTTTTAAAGATCTTCCTATTTGTCTATTCAGCCTCGTGGCTTTCACTGTATTTGACAGGTTGTCCTTGGTCATGATGGCCTTAGAAGAATAGTGTTTCTTGACTCACTTATACGTTATCCTTTATGTGTTCGTGCAGGTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAAT</genome_strand>
        <mrna_strand>ATTCATTTCAATCCCAACTATTTATTCTTACCTTCTTCTCAGGGCCTTCCGATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACAAGGCATCTCATTGTACTTTCTGTGATTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACACAACAGCTCATTCAG.........................................................................................................................................................................................................................................................AGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGATGTTGAAGTTGTGCAATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310323" ref_strand="+" ref_description="SGN-E310323 [cTOA-1-I5]">
      <seq>gatctactgtttcacctctgtttttgaattccaatatttctttcgccaatcgatctgcttcagagcattcagcaatcgatcggctttaatccagaatggctgctgagcctacaaaagaacatattgatgttgctgagactgaacctgtggcatcatctactgataatgaagaaaagacaaaaaagaagaaaaagaagggatttttttcgatgatatggaatagtttatttaggtccaaaaaggatgattttgagaagagattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacaaggcatctcattgtactttctgtgatttttgaggttattgcagtgggttatgctatcatgacaacacgatcccttgagctgaactggaaaatgaaggcattgcgagttttaccaatgtttctgttgcctggcttatccttcattacatattcagcgattggaagttttacaaggatgtgtgaacgtaaggaccagaaaactctataaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="42322" stop="35198"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42022" g_stop="41929" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41030" g_stop="40752" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="371" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39274" g_stop="39130" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="516" r_length="145" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="39129" i_stop="35531" i_length="3599">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35530" g_stop="35498" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="549" r_length="33" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E310323" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42022" e_stop="41929"/>
          <exon e_start="41030" e_stop="40752"/>
          <exon e_start="39274" e_stop="39130"/>
          <exon e_start="35530" e_stop="35498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAGGTATAAACTCATACGTTGAATTTGGTTATTGATCGTTCCACTGATAATTTTCTGTTGATTTTCGCTTTGAAATGATATATCTAATGACTTGTGAGTTATTGATTATGTATTTTGTTTTCCTGATTCATTTATTGTTCATCAAATTTGTTTGATGATTTTGAAATACGGAGCAGCTAGTTGATTTTTGGAGTAGTTACATAGTATTGCTGGAGCTAAAGTGATAAGTCTCCTTATTGCTTCTGAAGTTGTTGAATTGGGTTTGTGATAGTGTTGTTTTGGAAATTTAGGCATTATAGTTAGTCTTGAGCTGTAAGAAGAAGCATAATTTTGAGGTATATTACTGTATTCAATGTTGTACTCTCTCTATTCCATATTAACTGAATTTCTGAGGTTTTTTTCACTATTCAAAATAATTGAATTGTTCAAAGTTCAAGATGCATGTTTAAATTTGCCCTTTCATTATTGCAGTTTTATGTTTTCTAGGAGATAAATTACCCTACTTATAATTTTATAAAAGTAATAGTGAAAATTATGTGTTTGAATATGTGTCCATTGCCTTACAAGTTCAGTTAATATGGAATAAAGGGAGTACCGAATAATAAGTCATTTTATGGCAGCAGAAAAAAGTTTCTAATGAAGGAAGAGAGAGCAAAGGTGTTATGGGATGATGCTTAAAAATGCATTCTTGTATCTGTAAAGTCAAGTAGAAAGTGTATATTTAAGATAAATACATAATCTGAATTTTATTGATGGTGTTTAACGTGAATAGTATGGATGTTAAATGGGCAATTTTATTTGTATCATTAACTTTGATGCTTCTACAGGGCTATTGCTTTTTTCTCTCATTTGTTGCCGTTCTCCTTAAATCATTTGAATATAGATGCTCTTTAACTTGTAGGAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGTGTAAGTAATTAATGGTTGTTAGCTAACCGAAGTTCACATACTACTCATTTCATTGGGATGTCTTACATACTCATTTACCCCTTTTCCTTACTGTCTCTGCCTTTTGATGCTGAATGTGAAATAGAACTTCGATTTTTATGGCAAAATGATAATTGCCTGAGAGATGACCAGCTTTTCTGGGGTTGTTTTAACTTGGTTAAATAAATGTGGTATACATGATAGAGCCAGTGTCGCTCAAGTAACAAATTAAGCATGGATGATTAATTCCCTGTTGCTAACATGTAATGCCTTGATTAAGTAACATAATTTGGTGGAGGGTGGGGTGTATGTAACATAAGTAGCGTGTGAGAACAAAAAAAGTAAGTCCAAGTCAGTATATCTTTTTCATTTACAACAACAACATACCAGTGTGGTCCAACCAGTGGGGTTTGGGGAGGGTGGGGTGTATGTAAACCTTACTCCTACTTATGTGGGGTTAGAGGTTGTTTTCAATAGACTTTCGGCTCGTTTGAAAAAGATGCAAGACTAAATAACTATGGTGGATGATTGAAGAAAGAGAAGTACTACAACAACATACCTAGTATGATCCCACAAGTAGGGTTCTGGGGAAGAAAGAAAAATACTAACAACAGAATAGTAAAAATAAGCAAAGTAATAACAATAGTAATCAAATTGGAGAAACAAGATAATGCTAACATAATAATGAAAATAATACCGGGTAAGAGAGCTGATTGCTTCTATCCAATTACTAAAATGGGACAAGGAAGTCAGCAGACATCAGTCTCTAGTGATGAACCAGGATATCTTTAAGAGTGGTAGTCACATCTTCCAACATCTGACAGGTAATTCCATTATACCTGCAAAAGTTCAGATTGCTCAAATAAAGCAAGACTATCACTTGATGAAAAGGGAGGAAGATCATGTATTAAACTGCAAACTGGCCAAGTCCTTTCAAGTTAAAGACTCCCGGACAGAGTTCTTCTGGATGTGTTTCCTCCCATAAGAAAGAAAAGATTACTAAGAATTTCCTTTTATATTTTCCTTTTCTTACATTTTCTTTCTTTTATTCTTTATTTTCTTTTTCTTCCTTTCCCATGCTACTACCTTCTCCACCAGTACCACCACCTTCCCTATTAATGCTAATCTTCCGTTACCCTTTGGGTTAGCACAATTTTAAACCCCCGCTCCTGTGCAATAGCTAGCAAACCACATAGGAGAGGGTACCAACATTAGGCAAGTCCGATGCGACGAGCTTGACCCAGATGGCAAACCCCTTTCTTTCGCTGGCAAGGGGTTTCGAACTTGAGACCTCCAACATGGAAGTCCCAAGCCCAAACCACTGGGCCACCCCAAAGGGTATTTTAAACCCTATTTATGTTCAAAACTAAACCAATGAAGCAACCATTTTTAGTTTGGGAACGGAGGAGAGGAACTGACTGGTGACCTCCATGGAATGGAGGAAAGAAATTGCTGGTTAATCGTCAGATTTCATTCTAGTATGTCAGGTTATTTTTCGATGGGAGTTCAGGTTAATTATTGTATTTGCTGGCTTGGAAGTTTTCTAGTAAAACAAGTTGTAAAAGTGTTGTTCATCCAATTTTGTTCAAGTTTTTCGTCCTTATTGCTTGTGACTCACTGTACAACTGAGCTTTGAGATTATTTTTTCTTTTCTAGGTAGAGTATCAAAGATTTTGTTGGTTCTACTCCCAAGTATGTTTATTTCGCTAAACCAATTATGTAAATGATTGTTTCTGTTTTCTACACATGCTACTGATGGGTATTTCAGTGGTGAAGTGGTGGTTTGGGTGGTAAACGGTTGGAGGAAGAAAATGTTGGAAAGAAAGAAAGAACTGCAAGAAGACAGATAGAAGGGCATAAGGTGAATAACGAGTCACAGAGAGAGGCAGCTAACAGCGGAAGAAAGAGAGAGGTTGCTGACAGCAGAAGTAAGAGAGGGAAAAAATATAAACTAATAGACATAAATAAGAGGAAAAATGGAAATAGAAGGTTATGAAGTTGGCATGTGAAAACAAGGATTTGCATGAAAAGCACTTGCGTTCTTAATACTGGGATTGACCCAAAAATAGGGTAATATACAAAATCTAGTGTCTTTTTGGACATCAGGGATTATCTTAGGAAAGCTGTGTGTATTTTTCCAAAAAAAAAAAGGTGAGAGGGAAGGAGAACCAAGCAAACAATAGACAAGAAGGAAAATAAAGGAAAAGGGGATGAAAATTGAAAACAACAAGGCAGAAGCTAGAGTACATTTTTCAGAGCTGCCGTCGGGTTTGACTTAATGGCTGATCTTTTTAAAAAAGTATAAAGTGGTCTAAGGTTAGTGCGAACCAAGAAAATACACTGATTGAATCAACTTTAGAGCCAGTGTATTTTCTTATTTGGGCCACAAATCAATTTATTTTTGCAAGAAACAAGGTTTATCTTTAGTTATAAACAAAGCAAAGAAAAATTCAATAAATTGGACTAACCTTGACCACTTAACACAATTTAAAAGAGACAAGTTTATATTGAGAACACTTGAAGTAATTAAATAGATTGATACTAGCCACATTGTTAACCAGCAAAAAATATATAACTAATTCTAAGTAGGTATATGTATTTACATTCATTTGCAGCACACCTTCTTTCATCCATATTCTTTTTCTCCAAAACATATTGATATCTCCAAATCAGAAAATTTAAGAGACGACGAATCCAACCTCTACAACCATAGGCCATTGAATACTTGCACCTGTGTCCGTGGATCCATGCAATATAGGTTTCATGAATTCATTCGCTGTGATCCTTGTAGAATGCATGCTGTCATTTCCCTTTTTGCTTAAGCTTGTGTGGTATTGGATATTGCAGTTGTGTGCAAACCCTTCTTTCTAGCCTACAGAAATTTCTTTTGGACATTTTCTTTTGGGGGTGTGGGGTGTGGGGTTTGGGGTTGGGGGGGGGGGTATGGACTACTATAGTTGAAGCAGACATTGTTGTGTGGGAAATTATGATGATGAAAAGGAACCATGAAGATACTGAATTGATTGGTAACTGGACTGTAGCAGAAAGTTAGTGGCTGTAGAAGCAGAGGAAACTCTGCTTTTTAAAGTTACTTACAACCTAAAGAAAAACTTATGTAAAATTCAGATGAAAACCTGATTATTTTGATGAAGCTATAATGGCATATCAGAGCTCATAGATTTGATTTTGCACGTATTCAAATGGTTGAGAGTATATTTGATTTTTCTTTCTGATTAATGTTAGGCTCTCAAACAACATGAAATTGTCCATGACCTGTATTTTAAGGTCACCTTGTATGATGTTATTGAAAGATACAACTTACCAATCCCACAAGTGGGAAAAGGGCAGTCTGGTGCACAAAGCATCCAGTGTTTGCTGAGATGTTTTTGAAAATAGTATGCAAAAATTTATATCTTACTTCATTCCAGGGAAGTTTCCTTTTGGCTTTTAAAGATCTTCCTATTTGTCTATTCAGCCTCGTGGCTTTCACTGTATTTGACAGGTTGTCCTTGGTCATGATGGCCTTAGAAGAATAGTGTTTCTTGACTCACTTATACGTTATCCTTTATGTGTTCGTGCAGGTGAACGTAAGGACCAGAAAACTCTAGAAAAAC</genome_strand>
        <mrna_strand>GATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACAAGGCATCTCATTGTACTTTCTGTGATTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAAGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGTAAGGACCAGAAAACTCTATAAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337305" ref_strand="+" ref_description="SGN-E337305 [cTOE-7-H8]">
      <seq>tactgtttcacctctgtttttgaattccaatatttctttcgccaatcgatctgcttcagagcattcagcaatcgatcggctttaatccagaatggctgctgagcctacaaaagaacatattgatgttgctgagactgaacctgtggcatcatctactgataatgaagaaaagacaaaaaagaagaaaaagaagggatttttttcgatgatatggaatagtttatttaggtccaaaaaggatgattttgagaagagattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacaaggcatctcattgtactttctgtgattattgaggatattgcagtgggttatgctatcatgacaacacgatcccttgagctgaactggaaaatgagggcattgcgagttttaccaatgtttctgttgcctggcttatccttcattacatattcagcgattggaagtttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="42318" stop="38839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42018" g_stop="41929" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41030" g_stop="40752" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="367" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39274" g_stop="39139" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="503" r_length="136" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E337305" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42018" e_stop="41929"/>
          <exon e_start="41030" e_stop="40752"/>
          <exon e_start="39274" e_stop="39139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAGGTATAAACTCATACGTTGAATTTGGTTATTGATCGTTCCACTGATAATTTTCTGTTGATTTTCGCTTTGAAATGATATATCTAATGACTTGTGAGTTATTGATTATGTATTTTGTTTTCCTGATTCATTTATTGTTCATCAAATTTGTTTGATGATTTTGAAATACGGAGCAGCTAGTTGATTTTTGGAGTAGTTACATAGTATTGCTGGAGCTAAAGTGATAAGTCTCCTTATTGCTTCTGAAGTTGTTGAATTGGGTTTGTGATAGTGTTGTTTTGGAAATTTAGGCATTATAGTTAGTCTTGAGCTGTAAGAAGAAGCATAATTTTGAGGTATATTACTGTATTCAATGTTGTACTCTCTCTATTCCATATTAACTGAATTTCTGAGGTTTTTTTCACTATTCAAAATAATTGAATTGTTCAAAGTTCAAGATGCATGTTTAAATTTGCCCTTTCATTATTGCAGTTTTATGTTTTCTAGGAGATAAATTACCCTACTTATAATTTTATAAAAGTAATAGTGAAAATTATGTGTTTGAATATGTGTCCATTGCCTTACAAGTTCAGTTAATATGGAATAAAGGGAGTACCGAATAATAAGTCATTTTATGGCAGCAGAAAAAAGTTTCTAATGAAGGAAGAGAGAGCAAAGGTGTTATGGGATGATGCTTAAAAATGCATTCTTGTATCTGTAAAGTCAAGTAGAAAGTGTATATTTAAGATAAATACATAATCTGAATTTTATTGATGGTGTTTAACGTGAATAGTATGGATGTTAAATGGGCAATTTTATTTGTATCATTAACTTTGATGCTTCTACAGGGCTATTGCTTTTTTCTCTCATTTGTTGCCGTTCTCCTTAAATCATTTGAATATAGATGCTCTTTAACTTGTAGGAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTA</genome_strand>
        <mrna_strand>TACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACAAGGCATCTCATTGTACTTTCTGTGATTATTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261889" ref_strand="+" ref_description="SGN-E261889 [cLEG-61-F24]">
      <seq>atgatatggaatagtttatttaggtccaaaaaggatgattttgagaagatattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacaaggcatctcattgtactttctgtgatttttgaggttattgcagtgggttatgctatcatgacaacacgatcccttgagctgaactggaaaatgagggcattgcgagttttaccaatgtttctgttgcctgttttatccttcattacatattcaacgattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="41213" stop="38846"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40913" g_stop="40752" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39274" g_stop="39146" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="291" r_length="129" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E261889" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261889" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40913" e_stop="40752"/>
          <exon e_start="39274" e_stop="39146"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGA</genome_strand>
        <mrna_strand>ATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGATATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACAAGGCATCTCATTGTACTTTCTGTGATTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGTTTTATCCTTCATTACATATTCAACGATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324948" ref_strand="+" ref_description="SGN-E324948 [cTOC-11-M22]">
      <seq>tttcgccaatcgatctgctggagagcattcagccctatatcggctataatccataatggctgctgagcctacaaaagaacatattgatgttgctgagactgaacctgtggcatcatctactgataatgaagaaaagacaaaaaagaagaaaaagaagggatttttttcgatgatatggaatagtttatttaggtccaaaaaggatgattttgagaagagattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacaaggcatctcattgtactttctgtgatttttgaggttattgcagtgggttatgctatcatgacaacacgatcccttgagctgaactggaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="42282" stop="38917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41982" g_stop="41929" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.852"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41030" g_stop="40752" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="331" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39274" g_stop="39217" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="389" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E324948" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41982" e_stop="41929"/>
          <exon e_start="41030" e_stop="40752"/>
          <exon e_start="39274" e_stop="39217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAGGTATAAACTCATACGTTGAATTTGGTTATTGATCGTTCCACTGATAATTTTCTGTTGATTTTCGCTTTGAAATGATATATCTAATGACTTGTGAGTTATTGATTATGTATTTTGTTTTCCTGATTCATTTATTGTTCATCAAATTTGTTTGATGATTTTGAAATACGGAGCAGCTAGTTGATTTTTGGAGTAGTTACATAGTATTGCTGGAGCTAAAGTGATAAGTCTCCTTATTGCTTCTGAAGTTGTTGAATTGGGTTTGTGATAGTGTTGTTTTGGAAATTTAGGCATTATAGTTAGTCTTGAGCTGTAAGAAGAAGCATAATTTTGAGGTATATTACTGTATTCAATGTTGTACTCTCTCTATTCCATATTAACTGAATTTCTGAGGTTTTTTTCACTATTCAAAATAATTGAATTGTTCAAAGTTCAAGATGCATGTTTAAATTTGCCCTTTCATTATTGCAGTTTTATGTTTTCTAGGAGATAAATTACCCTACTTATAATTTTATAAAAGTAATAGTGAAAATTATGTGTTTGAATATGTGTCCATTGCCTTACAAGTTCAGTTAATATGGAATAAAGGGAGTACCGAATAATAAGTCATTTTATGGCAGCAGAAAAAAGTTTCTAATGAAGGAAGAGAGAGCAAAGGTGTTATGGGATGATGCTTAAAAATGCATTCTTGTATCTGTAAAGTCAAGTAGAAAGTGTATATTTAAGATAAATACATAATCTGAATTTTATTGATGGTGTTTAACGTGAATAGTATGGATGTTAAATGGGCAATTTTATTTGTATCATTAACTTTGATGCTTCTACAGGGCTATTGCTTTTTTCTCTCATTTGTTGCCGTTCTCCTTAAATCATTTGAATATAGATGCTCTTTAACTTGTAGGAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAA</genome_strand>
        <mrna_strand>TTTCGCCAATCGATCTGCTGGAGAGCATTCAGCCCTATATCGGCTATAATCCA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-TAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACAAGGCATCTCATTGTACTTTCTGTGATTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378719" ref_strand="+" ref_description="SGN-E378719 [TUS-40-A3]">
      <seq>gatctactgtttcacctctgtctttgaattccaatatttctttcgccaatcgatctgcttcagagcattcagcaatcgatcggctttaatccagaatggctgctgagcctacaaaagaacatattgatgttgctgagactgaacctgtggcatcatctactgataatgaagaaaagacaaaaaagaagaaaaagaagggatttttttcgatgatatggaatagtttatttaggtccaaaaaggatgattttgagaagagattgcagcatatttccaaggaggaggctgctgttattgccagaatcaataagcgatcccaaaattggagaaggatgacaaggcatctcattgtactttctgtgatttttgaggttattgcagtgggttatgctatcatgacaacacgatcccttgagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="42322" stop="38928"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42022" g_stop="41929" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41030" g_stop="40752" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="371" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477">
            <donor d_prob="0.615" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39274" g_stop="39228" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="418" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E378719" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42022" e_stop="41929"/>
          <exon e_start="41030" e_stop="40752"/>
          <exon e_start="39274" e_stop="39228"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAGGTATAAACTCATACGTTGAATTTGGTTATTGATCGTTCCACTGATAATTTTCTGTTGATTTTCGCTTTGAAATGATATATCTAATGACTTGTGAGTTATTGATTATGTATTTTGTTTTCCTGATTCATTTATTGTTCATCAAATTTGTTTGATGATTTTGAAATACGGAGCAGCTAGTTGATTTTTGGAGTAGTTACATAGTATTGCTGGAGCTAAAGTGATAAGTCTCCTTATTGCTTCTGAAGTTGTTGAATTGGGTTTGTGATAGTGTTGTTTTGGAAATTTAGGCATTATAGTTAGTCTTGAGCTGTAAGAAGAAGCATAATTTTGAGGTATATTACTGTATTCAATGTTGTACTCTCTCTATTCCATATTAACTGAATTTCTGAGGTTTTTTTCACTATTCAAAATAATTGAATTGTTCAAAGTTCAAGATGCATGTTTAAATTTGCCCTTTCATTATTGCAGTTTTATGTTTTCTAGGAGATAAATTACCCTACTTATAATTTTATAAAAGTAATAGTGAAAATTATGTGTTTGAATATGTGTCCATTGCCTTACAAGTTCAGTTAATATGGAATAAAGGGAGTACCGAATAATAAGTCATTTTATGGCAGCAGAAAAAAGTTTCTAATGAAGGAAGAGAGAGCAAAGGTGTTATGGGATGATGCTTAAAAATGCATTCTTGTATCTGTAAAGTCAAGTAGAAAGTGTATATTTAAGATAAATACATAATCTGAATTTTATTGATGGTGTTTAACGTGAATAGTATGGATGTTAAATGGGCAATTTTATTTGTATCATTAACTTTGATGCTTCTACAGGGCTATTGCTTTTTTCTCTCATTTGTTGCCGTTCTCCTTAAATCATTTGAATATAGATGCTCTTTAACTTGTAGGAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAGGTAATGTACTGTTTTCTAGTGTATGTTGTGATGTAGAAAAATGGAGCACGAGTCTTTTTTCCTTAAACAGATTTATCTTTTCTAAGCTTTTGAATTGGTTGTTTTATATCTGTATGTTCATGGTCATCTGGCTTTTGACATATTAAGTTTGTTTTGATTTTTGAATATACTTCACCAAATAGTGAAGTGATCGAGTGGAGCCTTGACAATTCTAAGTGACAGTTTGTGTGTGTTAAAAACTACTACATTTTTCTTCTAGTATTATTGCCAGAACATGGTCACACTTCTTTTGTCTACTCCTTCTGCCTTATTACTTACCTTCTCAAATAGAAAAAATGTTTATTCCTACTAGCCTAGTATGTTATTAATCAATTTAATTTTTCTTCCTCTGCCTTATGATGTTGCTGATACTTACTTGCATTCATGAAGAAATAGAATACATTCTAACTTCTAAATGCGCAAATATAGTTGATGGTCTTTCCAGAATCTATTTAATTTTTTCCTAATTATATTGAGCATAGGTGAAAAACAATTTAGTTATCTGATTAGCTAATTGATTATCATGTACAACACGATTATACAGTAACTAAATCTGATAAAACATGAGAAATATGCCAATCCAGTCCATTTGAGTGTGTTTCAACTTCTTTTAACTATTTGATGTGTAGCTGAAAGCTGTAAATGGTAACTGGATTTTACTATGCTTTTTTGAGCTAGAAATTTCTATTATGTAATTAAAGCACTCCGTGAAGATAAGCAAGATCTAGTTGAAAGCACCCTTCTCCTCCAACCTTGAGGGAGATTTCAGTCAAAGGAGAAAAAAGCGGGGAAGGGTCATTTTTTACTTCGGGGGAAGGAGGGGTTGGAGGAATGGTGAAGAACTATAGATCTAGGTTTCTGTATAAATTGAAACGAGTATAACAAACTTCTTTTTAGATGAATGGGATAATTCCTTTTGAATATCATTAGACGAATCTGACATGATATAAATACATCTTTTTATTTTGTTAGGCTACTTCCTTCGTTGAATTTTAATGGTGAATTGACAACAATGTAACACTGACTATATCATTTATTTCATTTCAATTGTGAACCATGACAATTGCTTTAGGAACTAATAAACTCATATTTTAACCAATTTGAGATGTTAACTTCATATCAATATTGAGAAGACCAGATAATTTCATGGAAAATTCAAAAAATATACACATGAAGTTGTAATTTCCTAAATGGAACTGTTGCGAATACTATCTACAGACTTCATTTTTTTGGGCATCCTGGTGGTTTAAATTATATTAAGCCTGCACTTGTTGCAGATGTTACTTATGCAGGTTATTATGTAGCTAATTGGTAATCAGTGTGTATCCTTTATGTTATAGGGGTATCTGACTGCTTGAGTTGCATGTTGTATTATCACATGTACATTATATGTTTTTTTGTCTTATGGGTGTCGTATTGCGGCTATTTCGATTTTCAGGTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCT</genome_strand>
        <mrna_strand>GATCTACTGTTTCACCTCTGTCTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACAAGGCATCTCATTGTACTTTCTGTGATTTTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546273" ref_strand="+" ref_description="SGN-E546273 [TUS-69-I21]">
      <seq>caatttttgagtgttttttgctactttgtatttgtttttgatctgtttcactgactcaaatcaaatcttgattctttggcattatctcacaacttcccatctacccccagagaatcagctgaatcaagaactgatttttagattatgttctcttgattctttgaaatgggaacttgattttcagttttccaattcagatgtttgtcttcttaagctggaaaacttgaaaaaggaaaccccagaatggatgaagtttagctggtggaccacttagtcctattgaacctagacagaggatttctgtattcacgtatccaaatatgcttcatgaaagaacataaatattgctgatattttctatcaagggccactatgggtgaaaatgcaaaaaagcgaaagtctttgtgggatgctgaagaagagagtccaccgaaatatgaggagtggggacctccaaaacctgaaaattcatggcagtccaaaagtagatcaggttggtcgtctggggacaatgttacaggaactgacgatttgaggaaggataactatcgattcaagagcatgtctccagcttttgaaaggcgggaaaggcgaagcaatagccactctccagataatggtcgggcccagtctcacagatacgttggcagagccaggagcaggagccggggaagaggagaaggtaggagcaggagtcgcagcaggggacgggacaagtttaggaccaggagcagaagcaggagtcgggacaggggtagtatgagagttcagaatangagtcgtagtcctcataatactaaacgtgatccatatgcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="48848" stop="64647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49148" g_stop="49458" g_length="311"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49459" i_stop="63415" i_length="13957">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63416" g_stop="63743" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="638" r_length="328" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="63744" i_stop="64166" i_length="423">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.71"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64167" g_stop="64347" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="639" r_stop="818" r_length="180" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E546273" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E546273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49148" e_stop="49458"/>
          <exon e_start="63416" e_stop="63743"/>
          <exon e_start="64167" e_stop="64347"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTTTGAGTGTTTTTTCCTACTTTGTATTTGTTTTTGATCTGTTTCACGGACTCAAACCAAATCTTGATTCTTTGGCATTTTCTCACAACTTCCCGTCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCGAATGTTTGTCTTCCTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGAGGAAGTTTAGCTGGTGTACCACCTAGTCCTATTGAACGTAGACAGAGGCTTTCTGTATTCACGTAAGTATCTAGCTAGGTCTCTACTTGTTGAATTTCCATTGATTTTGATTGAAGTTACTCTGCTGATTTGCTTACTTTTTGTCTTCGTTTACGTATCTGGGTGTGCTTATTTTGCTGTTTGAGCATTTGGGTCAAGATGGGTTTTTGGTTTTAGATTTGGGGAATGGAGTTGAGTACTGAAATTCCAGTGGAATCAAGTTCGTTTTTTTTTTGCTTACTTTCATTTACTTCTGAGCATAATTTGGGGGAAATCATAAGGGCGGGTTGGGTTTGGTTGTGCTAGTTTACGGAAATTTTATTTGATAGAATTTTGCATCCAACTGTCACCCAGGTCAGAGTTTGGGGCATTGGGTATAGTATAAGCTCACTTCTTTTTGGGATGATATTGGTATGTGCTGTTAATTCTTGTGCAATAGGTAGATCTCGAAGCATTTAATATCATCGAAGTTTAATCGTAGAAATTACATAGCCTAAATGTGAAATGAAGAAGATATCTTGAAGAGACTATATGGCACTATTTTTTATCATCTCTGCTTCACCTAATTTGTGTCTGATAAGTATCTAGTCATAATAGATCACACCTTTTAGTTGTTCACACCTTTTAGTTGTTCTGACAGCAGCCTGTGATGTGAGATAGTTATGCAACTGCTTCTGTTCTGCTTTTTTTGCATGACATCTCAGCTGATTGAGTTATTTTCTTCCATGTGTAGTCTCTATTTAGTTGTCTGACTGCTAGTATTTTCTGTTTTATCATTTTCTGTATGCTTGCTGACTTTATGGAAAATTTGGGTAATGAATACCTGCTCAACTGAGAAAAATATTTAAGTTAGGAGCCTTGTTGAGAGCTTGTATTCAAGGTGAAAATATAAGATGTAGCAATCTAGAAGTGCTTACATGATGTGCGTTTTCAACTACTTTCTTTTGTTTCCTAATACCGAAATCCTATTCCTAATGAGTTTTACCTTACATTAGATGACTCCCAATCAATAATGATATGTGTTTAGATTAAGAGGAAGAGGATGTAATGGAAGGGTATCCTTTGTAATAAGTTTTTTTTCTTCCATTCTTTTTTTTCGAAACTGTAACATTTGTATTTCACAGAGTACTTAGGTAGTACTGAAAAACCATATTTACAAAAGCAGAAAGTAAGTATAATCTATCCAAAAACTGAACCAAATCTAAATGGATCCTAAAACATCTATGATTGACTCAGTTTCATTGGAGTAGACATTTGTACACCAAAAGCAGAACAACAAAATACACTTAAGCTTACTTCCTACAAGTTGTTGTTCCTATTCTCAAAACATCTCTCGTTTCTCTCCCTCCATATAGTCCACCAAATACTAGCAGGGATCGTCCACCATCTTTCTCTGTTTGTAGCCCTAACTCCAGCCATCTCCCGACCGAATAGAGTCTCATCAATTTTGCTAGGCAGACACCAAGATATGTCTCTGAGATTAAGGAAAGTCTGCTACAGTTGCCCAGTGAAGTTGCAATGTAAGAATAGATGTCTCACTGTCTCATTAGCCTTCCCACACAAGGAACATCTATTACATAGAGAGATTCCTCTCTTGGCCACATTATCCAATGTCAAGACTGCCTCCTTAGCTAGTAGCCATGTAAAGCATGCCACTTTGTGTGGCACTTTGGTCCTCTAGATTTGCTTCCAAGGCCATTTGAAGTCTTGAATGCCACCAATAATTATTTGTTTGTATCCTTCTTTCACCTTGTAACTACCTTTGTTGTGCCCCTGCCACCATAAAAAATCCTCGCCTGTTTGTATACCTTGGAAACTCTCCAGAACCTTAAACAATTCAAGTATTCTGGGAATTTCCCAGTCATTCAAATTTCTTCTGAAAATCAGATCCCAGCCTTGTTGTGTCCACATTTCACCGACAGTCTTCTGTTGGTGTTGAGCCAGTGTAAAGATGTCAGGGAAACGATCTTTGAGGCTCATACCACCCAACCATTTATCGAACCAGAAACTGGTTTTCTGCCATTTTGTACCTTGACAGTTGACTGGGTACTGGGCCAAAATATTCGGATGGATTTCCAAAGGCTAATCCATAGGGGGTATTTACCTCTTTGGTTACCCATTTATTTAGCTCCTCGTACTTGTGGTTGATCACCCTATACCATAGTGCTTGGTCCTCCTGATGATACCTCCATAACCATTTCATCTTAAGAGCTTTGCTATGGTTTTTAAGATTCTTGATACCTAATCCACCTTGCATCTTACTTATAATGATGTTCTTCCACTTGACTAAGTGAAAACCTTTTCTTTCCTTATTTCCTTGCCACAAGAAGTTTCTTCTAATTTTGTCCAACCTCTGAACTACTGACTGAGGAATATGGAAGATAGATAGTATATATGTTGGTAGAGCATCCAGAACAGAGAACAAAGTTTATCAGTGTTAATCTACCTCCCAAGGAGAGGTATTGTGATCTCCATCTGGCTAGTTTCTTTTCACATTTCTCCACTATTGGGTTCCAAATGTCTATGGCTCCAGACTTTGCCTCCAAAGGCATGCCCAAGTATACTGATGGCAGAGTACCTATCACTCCTCCCAAGGGTTGTGAGAGGTGCTCCATATTCGGAACCACATTAATTGGATACAAATGGCTTTTGTTCCAGTTTATATGTAGTCCAAATATGGCTTCAAAGTAGACTAGTATAAGTCTCAAAATCAGCAATTGCTCCTCCTCAGTCCCACAAAATATTAGTGTATCATCAGCATACTGTAGGTGTATGATCTCCATGCTATTCCCGAAACCTTACTGATTTCAGATCCTTGTATTCTTCCAGTTGTCTTGGCTATCTTCAACATATTGTTAAGCCCCTCCATAGCTATGATGAACAAGAAGGGTGATAAAGGATCCCCTTGCCTGACTCCTCTGCATGCATTGAAGAAGCCTTCGGGAGACCCATTGATGATTACTGAAAACTTAACAGTTGAAATACAAAACTTGATCCAACCGATCCATCTGCTACCAAATCCCATTTGTCTCCTCATACTTAGAATGAAATCCCAATTCACATGGTCATATGCTTTCTCAACATCAAGTTTGCATAGTATACCAGGTTTCTTCTGGGACACTCTAGAATCAATTGCTTCATTAGCAATGAGCACTGCATCCATGATGTGTCTGCCTTTGATAAAAGCCGTCTGTTTTTTGTGTACCAACTTATCCACAACTCTCTTCAACCTTCTCTATCAAAACCTTGGACATTAGCTTATAGAAGCTCCAATTAAGCTGATGGGTCTGAAGTTCTTGAGTTCCTTCGCTCCGATCTTCTTAGGAATCAATGCTATATAGGTTGCATTATAGCTCTTTTCAAACATCCCAGTTGAGTGAAAATTGTGAAAAGCCCCCATAATGTCATGCTTAATGATCTCCCAACATTTTAGAAAGAACCTCATTGTGTATCCATCAGGACTAGGGGCTTTGTCTATAGCACACTTTTTTAAACACTCAAGTACTTCTTGTTCCTTGAAATCTGCCTGTAATGCTTCATTTTCACCCTCTGTAATGGTAGGATGGTTGCTGATATTTCCAGAGGGTCTCCAATCTTCAGGTTCTATATACAATTTTTTGTAGAAAGAAATAATTTCTTCTTTGATTCTATTTGGCTCTGTTATAGTCTCTCCCTGAACTTCCAGTTGATCAATATTGTTGCATCTCTTGTGGGCATTAGCTGTTTGGTGGAAGAACTTTGTATTCCTATCCCCTTCCTTGAGCCACAAAGCCCTCGATCTCTATCTCCAGGCCACTTCCTCATTCTTCAAACACCCCTCATACTCTATGAAAAGTGTGGCTTTTTTTTCTATCTCCTCCTCAGTTAACACTCTGTTGCTCTGATGTGATTCTAACTCAACCATCTGATTGAGAAGGTTGTTCTTTTGCAATTTCAGATTACCTTGTTATTTCTGCTCCATTCTTTCAATTTCCCTTTGAGGGCTTTGAGTTTGCATGCTAAGATGTAATCTGGCTTCCTATAGAATTCGAAATCATTCCACCAAACCTTGGTTCTATCAACAAATCCTTCTTGTGTCAGCCACCAATTTTCGAACTTAAAATAGGATTTAGATTGTTCCCAATGCCCACATAGCAAGGCTATAGGAACATGATCAGAAGTCACTGTTTGCATAATAGTTTGCTTTATGTTGGAGAAAAGATTATTCCATTCTATTGAAACTATAATCCTGTCTATCCTGGATGCTGTGATATGGCTATCACCCTTGTACCAGGTATACCGTCCACCACTTAATTGCAGATCAATGAGGTTCACGTCTTCAATGCATTATGAGAACTCTGTCATTGCTGAGTTTAACCTGTTGCATTCCTTTTTTTCAGAAGAAAATCTACAGACATTAAAGTCACCACAAACAGCCCATGGACCATCCATCAAGCCTCTTACATCAGCCAGTTCTTCCTATACAACCCTCCTCTCCACTTTATTATTCGGAGCATACACTCCGGTTATATGACATTCAAAATTGCTTGTCTGAGTAAGAACATCTGCAGGCTAATCTGAGGATGGTAGATAGGCAGTGATAAGCAATCCATCTTGGATCTTTTCTTTGATGAAATGACAGTCAATGTCAAAGTGTTTTGTTCTCTCATGAAACATAGAATTGGCTGCAATTTGTAATGCTGAAGTACTATCTGAATAAACAGGTACTGGTAGGGAGATGACAACACCTAACTCCTGAAACAAACCAACAGCCCAAACAACTTCTGCAACAGTTGAGGCCATGGCTCTGTACTCAGCCTCAGTTGAGCTTCTGGAGACTGTAACCTGCTTCTTGGACTTCCATGAGACAGGAGAATCTCCATATTTGATTAAGTATCTAGTGATTGACCTTCTGCTGTTGATACATGAACCCCAATCAGCATCACAAAACACCTGCAAATTATTTCCACCAGTAGATGACATTAGAATTCCTAGACCTGGTGCTGTCTTCAAATACCTGACCAATCTGAGTGCTGCATCCATATGTGAGGCCTTTGGTGCATGCATGAACTGACTCAAACATTGAACTGCAAATGATATGTCTGGCCTAGTGGTTGTGAGATACAACAACCTCCCAATCAACCTTTGATAGCTTGTAGGGTCTTCAAGGAGTGTATCAATATGTGCAGGATTTATGTGAGAATCAAACTCTGTGGTAGTGAGTTTAGATTCAGCTCCATAGGTGTTGACACTGGTTTAGCACCTGATAGTCCCATGTCTGCTAATGACTCCAAAGTGTACTTCCTCTGATGTATGAGAATCCCAGCTTCACTTCTAGCAAACTCCAACCCAAGGAAGTAGCTTAGTTCCCTTAGGTCTTTAATCTTGAATGCATGTTGCAAGACTATCTTGGTTTCATGAATCATACTGTAATCACTTCCCCTCATCAGTAAATCATCTACATAAATCAATACAACCACCAATTTATTTTCTTCCTCTTAGTAAACAAAGAATAGTCTCTAGTGATCTGTATGAAGCCTGAATCAATCAAGGTAGTGGTGAGTTTAATGTTCCACTTTCTTGAAGCTTGTTTAAGACCATAGAGAGACTTCAACAATCTAGATGCTTGATCACTGCCTACCTTTGTATACACTTAAACTTGTATAAAATTGAACAAGTAGACACATTTGTGCTATATGACATGATACACATACAATGCCGTAAAAGACATAAATTGCCATGTAGGGTGTCATGCAGTACGAATGTGTCAATTTGTTCAATTTTATACAAGTTTAAGTGCCTACTTGTGCACACCCAAAGTTAAAGGTCATAGTTGTCAGCTGACGCCAAGTTAAATGTCATGTTTATCTATTATGCCTTTAATAATATAAATGTTGTTTATATAACAATATACTTCAATAAGGTATTCAGTATTTAAACCATATTGAATGCCAAAAAAATTTAAAATGTATATCATATACCATACCAAATATTATAATATCAAAATCACGATATCTAAAAATTTCGATATATACCATACCATGACCACTCCTACCCTTCAACAAACTAAATAGATCAAAGAAACTCTCTAATTTTGAGTGTGCAAAGACGTACGTAAATTTGGTATAGAGTTGATTAAGCATATATTTTACTTGGTGGCACACATAAATTGTCACATTATGACGTGTGTATCTAATAATTCAATTTTATACCATATAAAATAGGAGGACATATGTATGCCAATAATCTATGATAGATTTATAGATTGTGTAAGGTGAGAAAAATGACCAAAATACCCCTATAGTGACTATCATTCAGCTAATACCTCTCTTACAGACCCAGTAGTTCATGTGTAGAGAGGTTGCGAAGACTTATAGGCCATAGACGAACTCCTTCAAATAATCTTTTTCTTCTACAATTCTCTCACATTCTCTCTTTCACTCTCTACTCTTGAGGGATTTTTTTATATAGAAGATTTCAGAACAAAGGGTACTGACCTTTGACATGTTAGCAAGTGGAGGACAAATGATATTTAATTTAAGGGATCTTAATTTTAGGAAATGGGTTAAAATAGAGTGTAGTGGACATAGATATAGCGGACCCAAACTAGTTTAAGATTGATTTATGCTTGTTGTTGGTTGAATTTGTACTGTGGTTGGGACTTGGACAATTTAATTTGTTGGATAGTATTCTGGGGATTCTGCATATAGACTAGATCTGAAGCTTGATTACTGGAATGTGGGTAATTAGCTTTGTCAATTGCTCCTAATCTGTTTGCCGGAAGTGATGAACAACTGTTCTTGAGTTGTTTGCCCGAAGCATTAAATTCGTTCATTTATATGAGGAGTTCACTACTCTTCTCATATACTTCCAGATGAAGTGTGGCTAGTATTAAAAAGAAGAAGTATTGATTAAGAGCACTATTTGAAATACTCTAAGCTATAGCATGTCCTTATTGGCGGTACTGCCGTATTGGTGAGTTGTTGCTCTTGCTCAAAGGCTAGTAAAGTTACAAAAGATAGGAAAAGGGATTTGAAGTTTCTCTAAAGAGTAACTAGTGTTGTAGAGGAGGATCATGTCGGAGAATTACTGAGATCAGTCATGCAGCCTTATAGAGCAACTCTACAAAGGAGTGTAATGAAAGGGTGGGCAGGTTTGACATAGTTATCAGATTTAAGTAAATAAAGCCATAATTTTTTTTGTGTCAATAAACAAATTTTATTGATAGCAAAAATTAGCCAAGCACTAAGCTAGTGAACATTAAAAAGTGAGAGGTCCTCCTATACCAAAAAAAGATAGCCTTTTATTTGGAAATAAAGCCAGAAATTGTGAACTTCTGAAAATGGTGCAACTATATTCTTTTTTTTTGTAACACTTGTCTCTTTGTCATCAAATGTCTTGCCTACGAACAGTAGTACTTAGTCTTGTATGCCAGCAACATAGAGATTAAAATTTATTTGGACCTGAATTTCGAAAGGAATTTGCAGTGCTAGGTGATGGAAGAGCTCAACAAGGTGATCTAATCATTCTACAAGCAAAAAAATATCAATTATCGATAATAACAGCCCAAATGAGAAGTCCGGGAGATGATATTTTCTCAATCTAAGTCTTTCTATAACATATTACTTGAAAGAGAACGAACACTTCCCTTACACTTCAGTTGGGTTACCAGAGCTTCAAGAAATTCACCTTTCTTAACTTGATGAACTGCACGGAAAGTCATCTTTACTTCATCAATAAAAGATCTGCATGGAAAGCCATCCACACAGAAGAATGGAGGAGTAAAATTTATAAAAATTGGTGTTTCATATGTAGGACTGCAATAGAGAATGTTAATAATTGTTGCTTCATGGTTCGACACAAACATGTTATGGTGCATGGTGTGGAAGGTGTTTGAAATTGAATTTATGACATCAACAATAGTTAGAGAGACTACTAGGGTGGATATTTAGAAGGACGAGGCTGAAAATGAGATTGTTGAAGTTAGCTCCTTGTTTCATGTATCTTGGATAATATAAACACGAACAAACAGAAGAGAATTTGAAGGAACTGAAAGACCCTTGTAAATGGTTTTGGGTGGGTATTTATTGGTGTATTGGCAAGTTCAGTTCCCTCATGGAATTTGATGAAAGACTTCCAATATAATTTGTGTTTGTTAAAGTTCACTGGTATTATTGTTAATCATCCTTAATTAGGCAAGGCTTGAATGATATTATCGGTCATTTGCGCTTCACTGATGCACATTTGGATGGTTATATCGGTTCTGCTTCTTTTGACGTGATGACATGGTTGTTCACCATCAGAAGTAGCAGTAGCAGACTAGCTGTAGCATGCTGTATAAAGTCAAAGCTAGTAGAAGTTGGAGAGTCGGGATAACAAAAGAGGCAGAAGAGAAGAAAAGGAATATAAAAAGAAGAGGCCATTATTCAACACCAAAGTATTAGTCAAAAGAAATTTGGGTACGACTTTATTACCAAGAATAACTTGGGGATGTTTTTACTATATGCGTCGGAGATTGTTGAATGTGAAACTAATAGACCCGTCATGACTTTTATTTTTGAGAATTAAAAAGGAAGACCTGTCATGACTTGATTCATCAAGTGCAATAATTGACATAAATAAAGTTTATATTTAGCTGCTACTGAAAAGCCAAATGAGCCCATTAATTATAGAAGTATATATCCACTGGATGATTTAAGGTTCAATAGAAGTTCTTTGGTCAAATTGTCTTCAGAGATGAGTGCTGGAATCACATCTTATATTTAGGCTCGCAAAATGGTTGCATCTTCTATGGACGTGCATTAGCTGGCAACATCAGATATACATTTTAAGTGATGGCCTTAGGATGCAACATAACCTCTCACCAGTGTTCTATTCAGCTGCAACTGGTATTCTAGCCATTAAGTTGTCTTGTTGCCCTAAATAGCAGTCATAGGACTACTCTTGTAGTTTCTCGCTCTTCAATTTCTGTGACTATTTTCTATGTTGTGTAGTTTGTTTGTAGTATTATTTTGTTATAGAACTGTTAGTTACTTTCTGTTATTTTTGTTACTATTTATTGTCCATACTCCATTGTACTTTCATTATGTCTTTGCCTAGACTCTCTGTCTTGAGAAGGGGATCTATTAGAATCAACCTCTCTACATCACTTCTGAGGTAGAGATGAGGTATGCGTACATACTGCCTTCTCCAGAACCCACTGGGTGGACTTCACTAGGTATGTTGTTGTTTAAGTTGTTTGTGACGAGTGTGAAGTCTGTCAACAAAATTTAAAGGATTGACAACCCCATTGATGCCTCATCCTGCTCAAAATACTTACTGCTTCCATTTTGTGGAAGGCCGTACATCGTTCAGTTCATAGAAAGTTGGAAATTTTTGTGTCTGGTTCAGAACTTGTAGAAGAACCAAGTGATGCTGGACCATTAGCAACTGCGTTTTAAGTTTCCGAATCTCCTGAAGCCTAAGCAAAGTAAATTTAGTTAGGATAAAGAACCTTTCCAACAGTCAGAAGTGATTGACTATAATGATTTGGAGATATGAATAGAGTTGTTATCTTCAAGTGCTATAACATGAAATTTGTTCTGGTTCTTATTCTGTTAATGGCGGTAGTTGCTAGTTGTTTGTTGTGTTCTTGGATCACTAGTTTGTGTAGCTAATTTTGTTGGATATTCTTTCTTCTCTTGGATTTATTGGGGATTGGTGTTGCTGTCCCTAATTTTTTGGGGATCTTCGTGGAACATTTATTATCTTACTTTCTTATATCAATCAAACAAAAGAAATGTAGTTACTTTATTTTGGTCCTTCTATTTGTATGTATAGCAATTATTCTATTGCTGCTGTCTCTAGAGCTTGGGTCTAGTGGTAGGTGTGCAATACGTGACATTTTAGGTGCACCTGAGGGGTTTGAATTCCTGCCGCATGCAAACACCTGATATTTAAGTGAAGAGGAGTAGAGGGGGGACCCGTTATCCACCAAGTCTCAAATTGTTTGTCATTAGCTCTCAGGTTTTTTCTAGGTTGTAAAATAATTATTGCATAGCTAGAAAATAATATTAATATTGTATTGTTGAACCATGTTTAGAAAACCTATTGTTTTGTTGAAACACTTTTCTTTGGAGAACGGTAACTTGAGTTTTACTTTTTACTATATTAGAAAAGGTTTCTTCAACATGTGTGTTTTGTATCTTTTAATTTAAATCTGGGGATTTCTTTGTCATTTTAGTACTTCACTATACCTTATGTGTCTTGTAAAGCTATATTGAATTGACACGTTATTATCATGTGTGTGTTGTTATTAATGTATGGTTTCATCTTTCCACTTCTCCCTTCACCGCTATGTATTCCTAGGAATCATAGAACCTCAAATCTTATCTGTTTGTTTCCATCATTCATCCTGGGTAAGGCTCCTCCAAATTTCTTTGATGTTTTCCTAACATTTCCATTTTTTTCAGAACTATAATGGTTGGTTTTCCCATGGTTGTTGTAATTGTTAACCTTAAACAACTATGATGATAAAAATGATCACTTATGTTTGAAGGTAGATTCAAAGTAGTCCCTTAGCTATGCAGTTATCAGTTTTAATTCAACATCTGAGTATCTTCATATTTCCTTCTATTCTTATTTGGGTTTGTTGTTGATGTTCAATTCTGTTTGTGCTTTGGAGACCCCAATAATTTGAATCGTAGTGGCTTCAATTTTTTGTTTCCTTATTTTGTTTTTTCACCGCCTCCTTTTGCATTTTCTGGATGCTATTTTCTCTATTTTTTCAATTTCAATTTTTGTTTTGACTTTTGTTATTTGATACTTTTAGGTTCTGAAATTATTTTCACTTACAGTGTGAAGTTAACTATCGGCTGCTACTTCTATCAGATTTTCAGCTACGGATATGTCATGTTTTCTTCCTCCCGTTGTTCCAATTTTTCTTTTTATCGTGCATTAGTTTTCTCTTTCTTGATTGAGTTGTAGATAATGGTATGCTAATACTCGAGTGGAAGAGTGAGATCAAGAATTAAGGATCACTTTTTAAGTTAATTTCTTGTCACTTTGAGATTATGAAATTGGCATTTGGTGAACTGAATTGTTATTTTTTACACTCCAAATTTTGTGAAGTTCTCAAATATTATCTTATTGTCTCCTTTATTGTACATTTTTTGTCATTTTAGTTATTAGTTGAGGGTACAATTCATTACATTGTATCTAACTACAAGTGCATATTACATTCTTATGGGAATATTAAAATATAACATGTCTATTACATTGCTAGAAACAAGAAAATTTTGCACTTTTTATAACATCAGGCAAGATTACAATTCCCTTGCACCCTCATCACCTATGTGGTGTAGCAAAATCCAAATCACATATGCACCAATTTGATAATGAGATCAGCTCATGAGGCGCTAGATGGGTATCTAGAATACCATGGAGACTGGACAGATTCAGCTTCAGAAATTTTAGCACCAAATGAATTATTAAAGTGTTTCAAGTAATGCAATGTCTACTAAAAGCATACTAGAAAAATCGTACCTGATAACCATCCATATTAGCTGCATTTAGACGACCACCCTCTTGTAGTAAGAGCTCAGCAACTTGCACTACTCCTCGAACAACACTCCAGTCCAATGTTGTTTGCTCTGTATGATCTGCAACATTTACATGTCATCCCTGCTGCCAAGCGCATCACCATCACTAGCCATCAATTCCCTACCAACCAAAAAGTTAAGGAATAATAAACACACAACTAAAGAATAGCAATCAACATAAAAGTCGATAATTCTGTCTTATTAATAGTACTTAATTCCTTTATTAGAATTATATAGACCTAGACATACCTAAGTGATTTCATACCGCTGATCCAACTAGTGGGATTGAAGGCAAGCTGAATTATTGATTCATTGATTGTTACTTGATACCGGGTACTTGTATGAATTTCTTTTGGGCTTTTTGCTTTCAACAACTATGTTCAGCTGGTTCTTGATCTGAAGTGGACGTGTTTGGGGAAATTTAAACAAAATAGGAGGTTACAAGTACCTTCTCTTAGAGACACTACTGAAAATTCATATTAGTGAGTTTGAAATATCAACTTTGATTTCTACATAAATTGACGACTTCAACTAACTTCATTAATGAATGGTAAGTCCTATAGGGATATAGTAGTGGTTTACCTGTAAGATCATTCCTATGAAGAATGAAATTCTTGGTTGTCTGGTTTGTTTTCCTTTGGTCAACCTACAAATGCATGTTGGAATGAAATAATGTGGTAATGACTACGTTGTTGCTCACTGCTTGAATAATGTCATTGTTCCATAATCGATGAGCTTTCGATCACCAAGGTTGAGCATCCTACTTTGATGATGTTCATTTTATTTGTGTATAGTTGACACTTCTTAAAAATCATATTTGCATGAATGATCAACCTTGCATTCATGTACATTCTCACAATAACATGAAGAGAGTTCTTCTATATACATACCTAAACTTTCAATTTCACCAATTACTGAACTTACTTTAATCTGCGTTCTTGCTATTTAAATCCCAAGGTTTAGGCTACAATGAATACAATTGTTATAAGTTTTAAAGGATGTAGGTGAATATAATAAGAGCAGATAGGTTCTATAAGGATTGGTGTATTGGAAGATTGAGTTGGATGATTTTGATTTTTGAGTTGGATGACTCTGAAATTTTCTGTTGAAGCAGTTTTTGTTGACAGAGTTTTTCAGGTCTAGAGTTTCAGAAATTGAGAAAACAGTTAGGAGACCTCGAATGACTGCCACTTATAATAGTCTGATTAATTTGTATGGAAGGCCTGCAAATGTGTTTAATGAGATGTTGAAAATCTGATTTTGGACACTGTAACATTTAATACTATGATTTTTGTTTCTGTAAGTCATGGCTTCCTGAAAAAGGTGAAAGTTTTGGAGAACAAGATGGAGTAGGGAGGAATATTTCCTAACACTAAAACATACAACATCTTCCTGTTTCTTTATGCTAATGCAGGTAAGATTGATAGGATTCTTTGGTGGCACAAAAAGACAAGTACAATATGTGAAAAGCCGATGTTTATATATATATATATATATATGCTCATATTTAGCTCGTAAAAATATGTCAATGTAGCACGAGCCATTTCTGCCTAGTATTAAAGAAAACTAATACTTCTAGCAACTAGACTCAAAAATATTATGACCTACCTACTCTTGAGTGCAATTTCTGATTCTTAGCATAGACTTGTCTTGGCTGAGAGATCAATCAAGAGGTCACTACTGCATCAGATTGACTCTGTCAGTGTGTCGTTCCGTTACTCTCTCCTCTACATGTTTGTTTTTTCCCAATAAATCAATCAATTTATTAATACCAGCTTTAGAGGATATATCAGTTGTACGAATCCTTTATATCAATCACGTTCTATTAGGGCCCATTTGATTGTAGTACTCAATAATCGATATAAAATTAAACTTGAGGATCTGTACATTGACACTTGTAACACCAACATAAAGCTCTCTAACAAAAGTAAAAACACCTGACAATCATTAAATCCAATGTATGTGTAATAACATCTTAATTTTGACTAATTGATATTGCCTTCATGTAACATTTTTTTCTTCTTTTTCTATTGTTGATTTGCAAGAGATCATAGCTCTATTGTCCCCTTTAGCATATTATATTACCGCACCTATTGACAAGTGTATTTGGAACTTTACATAGGGACATGACACTATTTCATGGGATCTTCTCTCGTTTTCTCATTTATGTATGCTACTTGCATATTCATCTTGAGTTTCATATTTCTACAACACATATTCTGCATATTTTAAGTTTAGTGGTCAAACATTCACTCTTATCTGGAACTTGTATTTTATTTTGTTGTTATTCCATTTTTTTGAATTACGATAATCAATCTTCTATGGAAGTAATCCAGAAAGGGCGCATGATAGAATCTTTTTTGTTACTGCTTTGAGGCTGCTTGATCCACTGAAATAGTAAAATCATGTCTATACTTTTCAGGTCTCCAAATATGCTTCATGAAAGAACATAAATATTGCTGATATTTTCTATCAAGGGCCACTATGGGTGAAAATGCAAAAAAGCGAAAGTCTTTGTGGGATGCTGAAGAAGAGAGTCCACCGAAATATGAGGAGTGGGGACCTCCAAAACCTGAAAATTCATGGCAGTCCAAAAGTAGATCAGGTTGGTCGTCTGGGGACAATGTTACAGGAACTGAAGATTTGAGGAAGGATAACTATCATTACAAGAGCATGTCTCCAGCTTTTGAAAGGCGGGAAAGGCGAAGCAATAGCCACTCTCCAGATAATGGTCGGGCCCAGTCTCACAGGTCTGCTCACAATATTTGGTTTAATGATGCATCATACTCATCATTATCAAAAGATAATTGATTCCTTATTTGTAAAAGGTATTAGCTCTCAAGTAAGGTTGTTACTTGGGTTTGAGATGCATTTCATGTATCAAAATTTGCAAAGAAAGAAGCTCTAGCTGGCGGGACGTCACTACTTTACCTTCTTTTATATTTCAGTTTTACTTGCTCCGAAGTGTGTACAAGTTCATTTGATTTTCCATCATTCGTGTTTGGTGCTCTCTCCCTTTTACCTGATCTCCCCTTTGGGTTGAGGGGGAAGGGAAGAGGGTATTGGGCTAGAAGACATGGTTGATCATACTTCTACTAATATGTTGTGGTTTGTTTGTTTCTCATTTGATAGATACGTCGGCAGAGCCAGGAGCAGGAGCCGGGGAAGGGGAGA-AGGTAGGAGCAGGAGTC-GCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATC</genome_strand>
        <mrna_strand>CAATTTTTGAGTGTTTTTTGCTACTTTGTATTTGTTTTTGATCTGTTTCACTGACTCAAATCAAATCTTGATTCTTTGGCATTATCTCACAACTTCCCATCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCAGATGTTTGTCTT-CTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGATGAAGTTTAGCTGGTGGACCACTTAGTCCTATTGAACCTAGACAGAGGATTTCTGTATTCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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................................ATACGT-TG-GCA-GAGCCAGGAGCAGGAGCCGGGGAAGAGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGTCGGGACAGGGGTAGTATGAGAGTTCAGAATANGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E358683" ref_strand="+" ref_description="SGN-E358683 [cLHT-22-N5]">
      <seq>aatttttgagtgttttttgctactttgtatttgtttttgatctgtttcactgactcaaatcaaatcttgattctttggcattatctcacaacttcccatctacccccagagaatcagctgaatcaagaactgatttttagattatgttctcttgattctttgaaatgggaacttgattttcagttttccaattcagatgtttgtcttcttaagctggaaaacttgaaaaaggaaaccccagaatggatgaagtttagctggtggaccacttagtcctattgaacctagacagaggatttctgtattcacgtatccaaatatgcttcatgaaagaacataaatattgctgatattttctatcaagggccactatgggtgaaaatgcaaaaaagcgaaagtctttgtgggatgctgaaaaagagagtccaccgaaatatgaggagtggggacctccaaaacctgaaaattcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="48849" stop="63879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49149" g_stop="49458" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49459" i_stop="63415" i_length="13957">
            <donor d_prob="0.997" d_score="0.92"/>
            <acceptor a_prob="0.807" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63416" g_stop="63579" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="473" r_length="164" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E358683" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49149" e_stop="49458"/>
          <exon e_start="63416" e_stop="63579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTGAGTGTTTTTTCCTACTTTGTATTTGTTTTTGATCTGTTTCACGGACTCAAACCAAATCTTGATTCTTTGGCATTTTCTCACAACTTCCCGTCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCGAATGTTTGTCTTCCTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGAGGAAGTTTAGCTGGTGTACCACCTAGTCCTATTGAACGTAGACAGAGGCTTTCTGTATTCACGTAAGTATCTAGCTAGGTCTCTACTTGTTGAATTTCCATTGATTTTGATTGAAGTTACTCTGCTGATTTGCTTACTTTTTGTCTTCGTTTACGTATCTGGGTGTGCTTATTTTGCTGTTTGAGCATTTGGGTCAAGATGGGTTTTTGGTTTTAGATTTGGGGAATGGAGTTGAGTACTGAAATTCCAGTGGAATCAAGTTCGTTTTTTTTTTGCTTACTTTCATTTACTTCTGAGCATAATTTGGGGGAAATCATAAGGGCGGGTTGGGTTTGGTTGTGCTAGTTTACGGAAATTTTATTTGATAGAATTTTGCATCCAACTGTCACCCAGGTCAGAGTTTGGGGCATTGGGTATAGTATAAGCTCACTTCTTTTTGGGATGATATTGGTATGTGCTGTTAATTCTTGTGCAATAGGTAGATCTCGAAGCATTTAATATCATCGAAGTTTAATCGTAGAAATTACATAGCCTAAATGTGAAATGAAGAAGATATCTTGAAGAGACTATATGGCACTATTTTTTATCATCTCTGCTTCACCTAATTTGTGTCTGATAAGTATCTAGTCATAATAGATCACACCTTTTAGTTGTTCACACCTTTTAGTTGTTCTGACAGCAGCCTGTGATGTGAGATAGTTATGCAACTGCTTCTGTTCTGCTTTTTTTGCATGACATCTCAGCTGATTGAGTTATTTTCTTCCATGTGTAGTCTCTATTTAGTTGTCTGACTGCTAGTATTTTCTGTTTTATCATTTTCTGTATGCTTGCTGACTTTATGGAAAATTTGGGTAATGAATACCTGCTCAACTGAGAAAAATATTTAAGTTAGGAGCCTTGTTGAGAGCTTGTATTCAAGGTGAAAATATAAGATGTAGCAATCTAGAAGTGCTTACATGATGTGCGTTTTCAACTACTTTCTTTTGTTTCCTAATACCGAAATCCTATTCCTAATGAGTTTTACCTTACATTAGATGACTCCCAATCAATAATGATATGTGTTTAGATTAAGAGGAAGAGGATGTAATGGAAGGGTATCCTTTGTAATAAGTTTTTTTTCTTCCATTCTTTTTTTTCGAAACTGTAACATTTGTATTTCACAGAGTACTTAGGTAGTACTGAAAAACCATATTTACAAAAGCAGAAAGTAAGTATAATCTATCCAAAAACTGAACCAAATCTAAATGGATCCTAAAACATCTATGATTGACTCAGTTTCATTGGAGTAGACATTTGTACACCAAAAGCAGAACAACAAAATACACTTAAGCTTACTTCCTACAAGTTGTTGTTCCTATTCTCAAAACATCTCTCGTTTCTCTCCCTCCATATAGTCCACCAAATACTAGCAGGGATCGTCCACCATCTTTCTCTGTTTGTAGCCCTAACTCCAGCCATCTCCCGACCGAATAGAGTCTCATCAATTTTGCTAGGCAGACACCAAGATATGTCTCTGAGATTAAGGAAAGTCTGCTACAGTTGCCCAGTGAAGTTGCAATGTAAGAATAGATGTCTCACTGTCTCATTAGCCTTCCCACACAAGGAACATCTATTACATAGAGAGATTCCTCTCTTGGCCACATTATCCAATGTCAAGACTGCCTCCTTAGCTAGTAGCCATGTAAAGCATGCCACTTTGTGTGGCACTTTGGTCCTCTAGATTTGCTTCCAAGGCCATTTGAAGTCTTGAATGCCACCAATAATTATTTGTTTGTATCCTTCTTTCACCTTGTAACTACCTTTGTTGTGCCCCTGCCACCATAAAAAATCCTCGCCTGTTTGTATACCTTGGAAACTCTCCAGAACCTTAAACAATTCAAGTATTCTGGGAATTTCCCAGTCATTCAAATTTCTTCTGAAAATCAGATCCCAGCCTTGTTGTGTCCACATTTCACCGACAGTCTTCTGTTGGTGTTGAGCCAGTGTAAAGATGTCAGGGAAACGATCTTTGAGGCTCATACCACCCAACCATTTATCGAACCAGAAACTGGTTTTCTGCCATTTTGTACCTTGACAGTTGACTGGGTACTGGGCCAAAATATTCGGATGGATTTCCAAAGGCTAATCCATAGGGGGTATTTACCTCTTTGGTTACCCATTTATTTAGCTCCTCGTACTTGTGGTTGATCACCCTATACCATAGTGCTTGGTCCTCCTGATGATACCTCCATAACCATTTCATCTTAAGAGCTTTGCTATGGTTTTTAAGATTCTTGATACCTAATCCACCTTGCATCTTACTTATAATGATGTTCTTCCACTTGACTAAGTGAAAACCTTTTCTTTCCTTATTTCCTTGCCACAAGAAGTTTCTTCTAATTTTGTCCAACCTCTGAACTACTGACTGAGGAATATGGAAGATAGATAGTATATATGTTGGTAGAGCATCCAGAACAGAGAACAAAGTTTATCAGTGTTAATCTACCTCCCAAGGAGAGGTATTGTGATCTCCATCTGGCTAGTTTCTTTTCACATTTCTCCACTATTGGGTTCCAAATGTCTATGGCTCCAGACTTTGCCTCCAAAGGCATGCCCAAGTATACTGATGGCAGAGTACCTATCACTCCTCCCAAGGGTTGTGAGAGGTGCTCCATATTCGGAACCACATTAATTGGATACAAATGGCTTTTGTTCCAGTTTATATGTAGTCCAAATATGGCTTCAAAGTAGACTAGTATAAGTCTCAAAATCAGCAATTGCTCCTCCTCAGTCCCACAAAATATTAGTGTATCATCAGCATACTGTAGGTGTATGATCTCCATGCTATTCCCGAAACCTTACTGATTTCAGATCCTTGTATTCTTCCAGTTGTCTTGGCTATCTTCAACATATTGTTAAGCCCCTCCATAGCTATGATGAACAAGAAGGGTGATAAAGGATCCCCTTGCCTGACTCCTCTGCATGCATTGAAGAAGCCTTCGGGAGACCCATTGATGATTACTGAAAACTTAACAGTTGAAATACAAAACTTGATCCAACCGATCCATCTGCTACCAAATCCCATTTGTCTCCTCATACTTAGAATGAAATCCCAATTCACATGGTCATATGCTTTCTCAACATCAAGTTTGCATAGTATACCAGGTTTCTTCTGGGACACTCTAGAATCAATTGCTTCATTAGCAATGAGCACTGCATCCATGATGTGTCTGCCTTTGATAAAAGCCGTCTGTTTTTTGTGTACCAACTTATCCACAACTCTCTTCAACCTTCTCTATCAAAACCTTGGACATTAGCTTATAGAAGCTCCAATTAAGCTGATGGGTCTGAAGTTCTTGAGTTCCTTCGCTCCGATCTTCTTAGGAATCAATGCTATATAGGTTGCATTATAGCTCTTTTCAAACATCCCAGTTGAGTGAAAATTGTGAAAAGCCCCCATAATGTCATGCTTAATGATCTCCCAACATTTTAGAAAGAACCTCATTGTGTATCCATCAGGACTAGGGGCTTTGTCTATAGCACACTTTTTTAAACACTCAAGTACTTCTTGTTCCTTGAAATCTGCCTGTAATGCTTCATTTTCACCCTCTGTAATGGTAGGATGGTTGCTGATATTTCCAGAGGGTCTCCAATCTTCAGGTTCTATATACAATTTTTTGTAGAAAGAAATAATTTCTTCTTTGATTCTATTTGGCTCTGTTATAGTCTCTCCCTGAACTTCCAGTTGATCAATATTGTTGCATCTCTTGTGGGCATTAGCTGTTTGGTGGAAGAACTTTGTATTCCTATCCCCTTCCTTGAGCCACAAAGCCCTCGATCTCTATCTCCAGGCCACTTCCTCATTCTTCAAACACCCCTCATACTCTATGAAAAGTGTGGCTTTTTTTTCTATCTCCTCCTCAGTTAACACTCTGTTGCTCTGATGTGATTCTAACTCAACCATCTGATTGAGAAGGTTGTTCTTTTGCAATTTCAGATTACCTTGTTATTTCTGCTCCATTCTTTCAATTTCCCTTTGAGGGCTTTGAGTTTGCATGCTAAGATGTAATCTGGCTTCCTATAGAATTCGAAATCATTCCACCAAACCTTGGTTCTATCAACAAATCCTTCTTGTGTCAGCCACCAATTTTCGAACTTAAAATAGGATTTAGATTGTTCCCAATGCCCACATAGCAAGGCTATAGGAACATGATCAGAAGTCACTGTTTGCATAATAGTTTGCTTTATGTTGGAGAAAAGATTATTCCATTCTATTGAAACTATAATCCTGTCTATCCTGGATGCTGTGATATGGCTATCACCCTTGTACCAGGTATACCGTCCACCACTTAATTGCAGATCAATGAGGTTCACGTCTTCAATGCATTATGAGAACTCTGTCATTGCTGAGTTTAACCTGTTGCATTCCTTTTTTTCAGAAGAAAATCTACAGACATTAAAGTCACCACAAACAGCCCATGGACCATCCATCAAGCCTCTTACATCAGCCAGTTCTTCCTATACAACCCTCCTCTCCACTTTATTATTCGGAGCATACACTCCGGTTATATGACATTCAAAATTGCTTGTCTGAGTAAGAACATCTGCAGGCTAATCTGAGGATGGTAGATAGGCAGTGATAAGCAATCCATCTTGGATCTTTTCTTTGATGAAATGACAGTCAATGTCAAAGTGTTTTGTTCTCTCATGAAACATAGAATTGGCTGCAATTTGTAATGCTGAAGTACTATCTGAATAAACAGGTACTGGTAGGGAGATGACAACACCTAACTCCTGAAACAAACCAACAGCCCAAACAACTTCTGCAACAGTTGAGGCCATGGCTCTGTACTCAGCCTCAGTTGAGCTTCTGGAGACTGTAACCTGCTTCTTGGACTTCCATGAGACAGGAGAATCTCCATATTTGATTAAGTATCTAGTGATTGACCTTCTGCTGTTGATACATGAACCCCAATCAGCATCACAAAACACCTGCAAATTATTTCCACCAGTAGATGACATTAGAATTCCTAGACCTGGTGCTGTCTTCAAATACCTGACCAATCTGAGTGCTGCATCCATATGTGAGGCCTTTGGTGCATGCATGAACTGACTCAAACATTGAACTGCAAATGATATGTCTGGCCTAGTGGTTGTGAGATACAACAACCTCCCAATCAACCTTTGATAGCTTGTAGGGTCTTCAAGGAGTGTATCAATATGTGCAGGATTTATGTGAGAATCAAACTCTGTGGTAGTGAGTTTAGATTCAGCTCCATAGGTGTTGACACTGGTTTAGCACCTGATAGTCCCATGTCTGCTAATGACTCCAAAGTGTACTTCCTCTGATGTATGAGAATCCCAGCTTCACTTCTAGCAAACTCCAACCCAAGGAAGTAGCTTAGTTCCCTTAGGTCTTTAATCTTGAATGCATGTTGCAAGACTATCTTGGTTTCATGAATCATACTGTAATCACTTCCCCTCATCAGTAAATCATCTACATAAATCAATACAACCACCAATTTATTTTCTTCCTCTTAGTAAACAAAGAATAGTCTCTAGTGATCTGTATGAAGCCTGAATCAATCAAGGTAGTGGTGAGTTTAATGTTCCACTTTCTTGAAGCTTGTTTAAGACCATAGAGAGACTTCAACAATCTAGATGCTTGATCACTGCCTACCTTTGTATACACTTAAACTTGTATAAAATTGAACAAGTAGACACATTTGTGCTATATGACATGATACACATACAATGCCGTAAAAGACATAAATTGCCATGTAGGGTGTCATGCAGTACGAATGTGTCAATTTGTTCAATTTTATACAAGTTTAAGTGCCTACTTGTGCACACCCAAAGTTAAAGGTCATAGTTGTCAGCTGACGCCAAGTTAAATGTCATGTTTATCTATTATGCCTTTAATAATATAAATGTTGTTTATATAACAATATACTTCAATAAGGTATTCAGTATTTAAACCATATTGAATGCCAAAAAAATTTAAAATGTATATCATATACCATACCAAATATTATAATATCAAAATCACGATATCTAAAAATTTCGATATATACCATACCATGACCACTCCTACCCTTCAACAAACTAAATAGATCAAAGAAACTCTCTAATTTTGAGTGTGCAAAGACGTACGTAAATTTGGTATAGAGTTGATTAAGCATATATTTTACTTGGTGGCACACATAAATTGTCACATTATGACGTGTGTATCTAATAATTCAATTTTATACCATATAAAATAGGAGGACATATGTATGCCAATAATCTATGATAGATTTATAGATTGTGTAAGGTGAGAAAAATGACCAAAATACCCCTATAGTGACTATCATTCAGCTAATACCTCTCTTACAGACCCAGTAGTTCATGTGTAGAGAGGTTGCGAAGACTTATAGGCCATAGACGAACTCCTTCAAATAATCTTTTTCTTCTACAATTCTCTCACATTCTCTCTTTCACTCTCTACTCTTGAGGGATTTTTTTATATAGAAGATTTCAGAACAAAGGGTACTGACCTTTGACATGTTAGCAAGTGGAGGACAAATGATATTTAATTTAAGGGATCTTAATTTTAGGAAATGGGTTAAAATAGAGTGTAGTGGACATAGATATAGCGGACCCAAACTAGTTTAAGATTGATTTATGCTTGTTGTTGGTTGAATTTGTACTGTGGTTGGGACTTGGACAATTTAATTTGTTGGATAGTATTCTGGGGATTCTGCATATAGACTAGATCTGAAGCTTGATTACTGGAATGTGGGTAATTAGCTTTGTCAATTGCTCCTAATCTGTTTGCCGGAAGTGATGAACAACTGTTCTTGAGTTGTTTGCCCGAAGCATTAAATTCGTTCATTTATATGAGGAGTTCACTACTCTTCTCATATACTTCCAGATGAAGTGTGGCTAGTATTAAAAAGAAGAAGTATTGATTAAGAGCACTATTTGAAATACTCTAAGCTATAGCATGTCCTTATTGGCGGTACTGCCGTATTGGTGAGTTGTTGCTCTTGCTCAAAGGCTAGTAAAGTTACAAAAGATAGGAAAAGGGATTTGAAGTTTCTCTAAAGAGTAACTAGTGTTGTAGAGGAGGATCATGTCGGAGAATTACTGAGATCAGTCATGCAGCCTTATAGAGCAACTCTACAAAGGAGTGTAATGAAAGGGTGGGCAGGTTTGACATAGTTATCAGATTTAAGTAAATAAAGCCATAATTTTTTTTGTGTCAATAAACAAATTTTATTGATAGCAAAAATTAGCCAAGCACTAAGCTAGTGAACATTAAAAAGTGAGAGGTCCTCCTATACCAAAAAAAGATAGCCTTTTATTTGGAAATAAAGCCAGAAATTGTGAACTTCTGAAAATGGTGCAACTATATTCTTTTTTTTTGTAACACTTGTCTCTTTGTCATCAAATGTCTTGCCTACGAACAGTAGTACTTAGTCTTGTATGCCAGCAACATAGAGATTAAAATTTATTTGGACCTGAATTTCGAAAGGAATTTGCAGTGCTAGGTGATGGAAGAGCTCAACAAGGTGATCTAATCATTCTACAAGCAAAAAAATATCAATTATCGATAATAACAGCCCAAATGAGAAGTCCGGGAGATGATATTTTCTCAATCTAAGTCTTTCTATAACATATTACTTGAAAGAGAACGAACACTTCCCTTACACTTCAGTTGGGTTACCAGAGCTTCAAGAAATTCACCTTTCTTAACTTGATGAACTGCACGGAAAGTCATCTTTACTTCATCAATAAAAGATCTGCATGGAAAGCCATCCACACAGAAGAATGGAGGAGTAAAATTTATAAAAATTGGTGTTTCATATGTAGGACTGCAATAGAGAATGTTAATAATTGTTGCTTCATGGTTCGACACAAACATGTTATGGTGCATGGTGTGGAAGGTGTTTGAAATTGAATTTATGACATCAACAATAGTTAGAGAGACTACTAGGGTGGATATTTAGAAGGACGAGGCTGAAAATGAGATTGTTGAAGTTAGCTCCTTGTTTCATGTATCTTGGATAATATAAACACGAACAAACAGAAGAGAATTTGAAGGAACTGAAAGACCCTTGTAAATGGTTTTGGGTGGGTATTTATTGGTGTATTGGCAAGTTCAGTTCCCTCATGGAATTTGATGAAAGACTTCCAATATAATTTGTGTTTGTTAAAGTTCACTGGTATTATTGTTAATCATCCTTAATTAGGCAAGGCTTGAATGATATTATCGGTCATTTGCGCTTCACTGATGCACATTTGGATGGTTATATCGGTTCTGCTTCTTTTGACGTGATGACATGGTTGTTCACCATCAGAAGTAGCAGTAGCAGACTAGCTGTAGCATGCTGTATAAAGTCAAAGCTAGTAGAAGTTGGAGAGTCGGGATAACAAAAGAGGCAGAAGAGAAGAAAAGGAATATAAAAAGAAGAGGCCATTATTCAACACCAAAGTATTAGTCAAAAGAAATTTGGGTACGACTTTATTACCAAGAATAACTTGGGGATGTTTTTACTATATGCGTCGGAGATTGTTGAATGTGAAACTAATAGACCCGTCATGACTTTTATTTTTGAGAATTAAAAAGGAAGACCTGTCATGACTTGATTCATCAAGTGCAATAATTGACATAAATAAAGTTTATATTTAGCTGCTACTGAAAAGCCAAATGAGCCCATTAATTATAGAAGTATATATCCACTGGATGATTTAAGGTTCAATAGAAGTTCTTTGGTCAAATTGTCTTCAGAGATGAGTGCTGGAATCACATCTTATATTTAGGCTCGCAAAATGGTTGCATCTTCTATGGACGTGCATTAGCTGGCAACATCAGATATACATTTTAAGTGATGGCCTTAGGATGCAACATAACCTCTCACCAGTGTTCTATTCAGCTGCAACTGGTATTCTAGCCATTAAGTTGTCTTGTTGCCCTAAATAGCAGTCATAGGACTACTCTTGTAGTTTCTCGCTCTTCAATTTCTGTGACTATTTTCTATGTTGTGTAGTTTGTTTGTAGTATTATTTTGTTATAGAACTGTTAGTTACTTTCTGTTATTTTTGTTACTATTTATTGTCCATACTCCATTGTACTTTCATTATGTCTTTGCCTAGACTCTCTGTCTTGAGAAGGGGATCTATTAGAATCAACCTCTCTACATCACTTCTGAGGTAGAGATGAGGTATGCGTACATACTGCCTTCTCCAGAACCCACTGGGTGGACTTCACTAGGTATGTTGTTGTTTAAGTTGTTTGTGACGAGTGTGAAGTCTGTCAACAAAATTTAAAGGATTGACAACCCCATTGATGCCTCATCCTGCTCAAAATACTTACTGCTTCCATTTTGTGGAAGGCCGTACATCGTTCAGTTCATAGAAAGTTGGAAATTTTTGTGTCTGGTTCAGAACTTGTAGAAGAACCAAGTGATGCTGGACCATTAGCAACTGCGTTTTAAGTTTCCGAATCTCCTGAAGCCTAAGCAAAGTAAATTTAGTTAGGATAAAGAACCTTTCCAACAGTCAGAAGTGATTGACTATAATGATTTGGAGATATGAATAGAGTTGTTATCTTCAAGTGCTATAACATGAAATTTGTTCTGGTTCTTATTCTGTTAATGGCGGTAGTTGCTAGTTGTTTGTTGTGTTCTTGGATCACTAGTTTGTGTAGCTAATTTTGTTGGATATTCTTTCTTCTCTTGGATTTATTGGGGATTGGTGTTGCTGTCCCTAATTTTTTGGGGATCTTCGTGGAACATTTATTATCTTACTTTCTTATATCAATCAAACAAAAGAAATGTAGTTACTTTATTTTGGTCCTTCTATTTGTATGTATAGCAATTATTCTATTGCTGCTGTCTCTAGAGCTTGGGTCTAGTGGTAGGTGTGCAATACGTGACATTTTAGGTGCACCTGAGGGGTTTGAATTCCTGCCGCATGCAAACACCTGATATTTAAGTGAAGAGGAGTAGAGGGGGGACCCGTTATCCACCAAGTCTCAAATTGTTTGTCATTAGCTCTCAGGTTTTTTCTAGGTTGTAAAATAATTATTGCATAGCTAGAAAATAATATTAATATTGTATTGTTGAACCATGTTTAGAAAACCTATTGTTTTGTTGAAACACTTTTCTTTGGAGAACGGTAACTTGAGTTTTACTTTTTACTATATTAGAAAAGGTTTCTTCAACATGTGTGTTTTGTATCTTTTAATTTAAATCTGGGGATTTCTTTGTCATTTTAGTACTTCACTATACCTTATGTGTCTTGTAAAGCTATATTGAATTGACACGTTATTATCATGTGTGTGTTGTTATTAATGTATGGTTTCATCTTTCCACTTCTCCCTTCACCGCTATGTATTCCTAGGAATCATAGAACCTCAAATCTTATCTGTTTGTTTCCATCATTCATCCTGGGTAAGGCTCCTCCAAATTTCTTTGATGTTTTCCTAACATTTCCATTTTTTTCAGAACTATAATGGTTGGTTTTCCCATGGTTGTTGTAATTGTTAACCTTAAACAACTATGATGATAAAAATGATCACTTATGTTTGAAGGTAGATTCAAAGTAGTCCCTTAGCTATGCAGTTATCAGTTTTAATTCAACATCTGAGTATCTTCATATTTCCTTCTATTCTTATTTGGGTTTGTTGTTGATGTTCAATTCTGTTTGTGCTTTGGAGACCCCAATAATTTGAATCGTAGTGGCTTCAATTTTTTGTTTCCTTATTTTGTTTTTTCACCGCCTCCTTTTGCATTTTCTGGATGCTATTTTCTCTATTTTTTCAATTTCAATTTTTGTTTTGACTTTTGTTATTTGATACTTTTAGGTTCTGAAATTATTTTCACTTACAGTGTGAAGTTAACTATCGGCTGCTACTTCTATCAGATTTTCAGCTACGGATATGTCATGTTTTCTTCCTCCCGTTGTTCCAATTTTTCTTTTTATCGTGCATTAGTTTTCTCTTTCTTGATTGAGTTGTAGATAATGGTATGCTAATACTCGAGTGGAAGAGTGAGATCAAGAATTAAGGATCACTTTTTAAGTTAATTTCTTGTCACTTTGAGATTATGAAATTGGCATTTGGTGAACTGAATTGTTATTTTTTACACTCCAAATTTTGTGAAGTTCTCAAATATTATCTTATTGTCTCCTTTATTGTACATTTTTTGTCATTTTAGTTATTAGTTGAGGGTACAATTCATTACATTGTATCTAACTACAAGTGCATATTACATTCTTATGGGAATATTAAAATATAACATGTCTATTACATTGCTAGAAACAAGAAAATTTTGCACTTTTTATAACATCAGGCAAGATTACAATTCCCTTGCACCCTCATCACCTATGTGGTGTAGCAAAATCCAAATCACATATGCACCAATTTGATAATGAGATCAGCTCATGAGGCGCTAGATGGGTATCTAGAATACCATGGAGACTGGACAGATTCAGCTTCAGAAATTTTAGCACCAAATGAATTATTAAAGTGTTTCAAGTAATGCAATGTCTACTAAAAGCATACTAGAAAAATCGTACCTGATAACCATCCATATTAGCTGCATTTAGACGACCACCCTCTTGTAGTAAGAGCTCAGCAACTTGCACTACTCCTCGAACAACACTCCAGTCCAATGTTGTTTGCTCTGTATGATCTGCAACATTTACATGTCATCCCTGCTGCCAAGCGCATCACCATCACTAGCCATCAATTCCCTACCAACCAAAAAGTTAAGGAATAATAAACACACAACTAAAGAATAGCAATCAACATAAAAGTCGATAATTCTGTCTTATTAATAGTACTTAATTCCTTTATTAGAATTATATAGACCTAGACATACCTAAGTGATTTCATACCGCTGATCCAACTAGTGGGATTGAAGGCAAGCTGAATTATTGATTCATTGATTGTTACTTGATACCGGGTACTTGTATGAATTTCTTTTGGGCTTTTTGCTTTCAACAACTATGTTCAGCTGGTTCTTGATCTGAAGTGGACGTGTTTGGGGAAATTTAAACAAAATAGGAGGTTACAAGTACCTTCTCTTAGAGACACTACTGAAAATTCATATTAGTGAGTTTGAAATATCAACTTTGATTTCTACATAAATTGACGACTTCAACTAACTTCATTAATGAATGGTAAGTCCTATAGGGATATAGTAGTGGTTTACCTGTAAGATCATTCCTATGAAGAATGAAATTCTTGGTTGTCTGGTTTGTTTTCCTTTGGTCAACCTACAAATGCATGTTGGAATGAAATAATGTGGTAATGACTACGTTGTTGCTCACTGCTTGAATAATGTCATTGTTCCATAATCGATGAGCTTTCGATCACCAAGGTTGAGCATCCTACTTTGATGATGTTCATTTTATTTGTGTATAGTTGACACTTCTTAAAAATCATATTTGCATGAATGATCAACCTTGCATTCATGTACATTCTCACAATAACATGAAGAGAGTTCTTCTATATACATACCTAAACTTTCAATTTCACCAATTACTGAACTTACTTTAATCTGCGTTCTTGCTATTTAAATCCCAAGGTTTAGGCTACAATGAATACAATTGTTATAAGTTTTAAAGGATGTAGGTGAATATAATAAGAGCAGATAGGTTCTATAAGGATTGGTGTATTGGAAGATTGAGTTGGATGATTTTGATTTTTGAGTTGGATGACTCTGAAATTTTCTGTTGAAGCAGTTTTTGTTGACAGAGTTTTTCAGGTCTAGAGTTTCAGAAATTGAGAAAACAGTTAGGAGACCTCGAATGACTGCCACTTATAATAGTCTGATTAATTTGTATGGAAGGCCTGCAAATGTGTTTAATGAGATGTTGAAAATCTGATTTTGGACACTGTAACATTTAATACTATGATTTTTGTTTCTGTAAGTCATGGCTTCCTGAAAAAGGTGAAAGTTTTGGAGAACAAGATGGAGTAGGGAGGAATATTTCCTAACACTAAAACATACAACATCTTCCTGTTTCTTTATGCTAATGCAGGTAAGATTGATAGGATTCTTTGGTGGCACAAAAAGACAAGTACAATATGTGAAAAGCCGATGTTTATATATATATATATATATATGCTCATATTTAGCTCGTAAAAATATGTCAATGTAGCACGAGCCATTTCTGCCTAGTATTAAAGAAAACTAATACTTCTAGCAACTAGACTCAAAAATATTATGACCTACCTACTCTTGAGTGCAATTTCTGATTCTTAGCATAGACTTGTCTTGGCTGAGAGATCAATCAAGAGGTCACTACTGCATCAGATTGACTCTGTCAGTGTGTCGTTCCGTTACTCTCTCCTCTACATGTTTGTTTTTTCCCAATAAATCAATCAATTTATTAATACCAGCTTTAGAGGATATATCAGTTGTACGAATCCTTTATATCAATCACGTTCTATTAGGGCCCATTTGATTGTAGTACTCAATAATCGATATAAAATTAAACTTGAGGATCTGTACATTGACACTTGTAACACCAACATAAAGCTCTCTAACAAAAGTAAAAACACCTGACAATCATTAAATCCAATGTATGTGTAATAACATCTTAATTTTGACTAATTGATATTGCCTTCATGTAACATTTTTTTCTTCTTTTTCTATTGTTGATTTGCAAGAGATCATAGCTCTATTGTCCCCTTTAGCATATTATATTACCGCACCTATTGACAAGTGTATTTGGAACTTTACATAGGGACATGACACTATTTCATGGGATCTTCTCTCGTTTTCTCATTTATGTATGCTACTTGCATATTCATCTTGAGTTTCATATTTCTACAACACATATTCTGCATATTTTAAGTTTAGTGGTCAAACATTCACTCTTATCTGGAACTTGTATTTTATTTTGTTGTTATTCCATTTTTTTGAATTACGATAATCAATCTTCTATGGAAGTAATCCAGAAAGGGCGCATGATAGAATCTTTTTTGTTACTGCTTTGAGGCTGCTTGATCCACTGAAATAGTAAAATCATGTCTATACTTTTCAGGTCTCCAAATATGCTTCATGAAAGAACATAAATATTGCTGATATTTTCTATCAAGGGCCACTATGGGTGAAAATGCAAAAAAGCGAAAGTCTTTGTGGGATGCTGAAGAAGAGAGTCCACCGAAATATGAGGAGTGGGGACCTCCAAAACCTGAAAATTCATGG</genome_strand>
        <mrna_strand>AATTTTTGAGTGTTTTTTGCTACTTTGTATTTGTTTTTGATCTGTTTCACTGACTCAAATCAAATCTTGATTCTTTGGCATTATCTCACAACTTCCCATCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCAGATGTTTGTCTT-CTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGATGAAGTTTAGCTGGTGGACCACTTAGTCCTATTGAACCTAGACAGAGGATTTCTGTATTCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCAAATATGCTTCATGAAAGAACATAAATATTGCTGATATTTTCTATCAAGGGCCACTATGGGTGAAAATGCAAAAAAGCGAAAGTCTTTGTGGGATGCTGAAAAAGAGAGTCCACCGAAATATGAGGAGTGGGGACCTCCAAAACCTGAAAATTCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284025" ref_strand="+" ref_description="SGN-E284025 [cLER-13-E23]">
      <seq>aaagtaccacacaaagtgacatgctttacattgctactagccaaggaggcagtattgacattggataatgtggccaagagaggaatctctctatgcaatagatgttccttgtggggaatgctaatgagacagtgagacatctcttattacattgcaacttgactgggcaactgtggcagattttccttaatctcagaggcatatcttgatgtatgcctagcaagattgatgagactctattcggttgggagatggctggagttggggctacaaacagagaaagatggcggatgatccctgctagtatttggtggctatatggagggagagaaacgagagatgttacgaaaataggaacaaaaacctgcaggaaattaagcttaagtgtgttttattgatctgcttttggtgtacaaatgtctactccaatgaaactgagtcaatcatagatgttttaggatccatttacatttggttcagttttttggattgaatatacttactttctgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="51406" stop="50294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51106" g_stop="50594" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E284025" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51106" e_stop="50594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTGCCACACAAAGTGGCATGCTTTACATGGCTACTAGCTAAGGAGGCAGTCTTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGTAATAGATGTTCCTTGTGTGGGAAGGCTAATGAGACAGTGAGACATCTATTCTTACATTGCAACTTCACTGGGCAACTGTAGCAGACTTTCCTTAATCTCAGAGACATATCTTGGTGTCTGCCTAGCAAAATTGATGAGACTCTATTCGGTCGGGAGATGGCTGGAGTTAGGGCTACAAACAGAGAAAGATGGTGGACGATCCCTGCTAGTATTTGGTGGACTATATGGAGGGAGAGAAACGAGAGATGTTTTGAGAATAGGAACAACAACTTGTAGG-AAGTAAGCTTAAGTGTATTTTGTTGTTCTGCTTTTGGTGTACAAATGTCTACTCCAATGAAACTGAGTCAATCATAGATGTTTTAGGATCCATTTAGATTTGGTTCAG-TTTTTGGATAGATTATACTTACTTTCTGCTTT</genome_strand>
        <mrna_strand>AAAGTACCACACAAAGTGACATGCTTTACATTGCTACTAGCCAAGGAGGCAGTATTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGCAATAGATGTTCCTTGTG-GGGAATGCTAATGAGACAGTGAGACATCTCTTATTACATTGCAACTTGACTGGGCAACTGTGGCAGATTTTCCTTAATCTCAGAGGCATATCTTGATGTATGCCTAGCAAGATTGATGAGACTCTATTCGGTTGGGAGATGGCTGGAGTTGGGGCTACAAACAGAGAAAGATGGCGGATGATCCCTGCTAGTATTTGGTGG-CTATATGGAGGGAGAGAAACGAGAGATGTTACGAAAATAGGAACAAAAACCTGCAGGAAATTAAGCTTAAGTGTGTTTTATTGATCTGCTTTTGGTGTACAAATGTCTACTCCAATGAAACTGAGTCAATCATAGATGTTTTAGGATCCATTTACATTTGGTTCAGTTTTTTGGATTGAATATACTTACTTTCTGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323077" ref_strand="+" ref_description="SGN-E323077 [cTOB-28-G24]">
      <seq>gaaggtaggagcaggagtcgcagcaggggacggggaaggggagaaggtaggagcaggagtcgcagcaggggacgggacaaatttaggaccaggagcagaagcaggagccgggacaggggtagtatgagagttcagaataggagtcgtagtcctcataatactaaacgtgatccatatgcatcaggtgatagaagagctagccttcatatatcttcccaggtatgcagaaattttgcagcggggaattgtaggagaggcagtgattgcaggttcattcatctagattctgccagtcatagggatgaaggtcattcagaggacaacttgtcagaaagattgggtagtcgacctgagcgtgggcatatctcaaggtataatgatagtgaaggtcctgggtaccaatcaagggacatgcttcctgatatgcatcatttggaggatgagctgaacagaaatcggagtagaggtacaattacttgcaggaattttgtgaaaagcaactgtcgctggggtgcatcatgcagattttctcatgatggtgcctcaggtgattactatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="63866" stop="65025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64166" g_stop="64725" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E323077" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323077" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64166" e_stop="64725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGA</genome_strand>
        <mrna_strand>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAATTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323193" ref_strand="+" ref_description="SGN-E323193 [cTOB-28-G23]">
      <seq>gaaggtaggagcaggagtcgcagcaggggacggggaaggggagaaggtaggagcaggagtcgcagcaggggacgggacaaatttaggaccaggagcagaagcaggagccgggacaggggtagtatgagagttcagaataggagtcgtagtcctcataatactaaacgtgatccatatgcatcaggtgatagaagagctagccttcatatatcttcccaggtatgcagaaattttgcagcggggaattgtaggagaggcagtgattgcaggttcattcatctagattctgccagtcatagggatgaaggtcattcagaggacaacttgtcagaaagattgggtagtcgacctgagcgtgggcatatctcaaggtataatgatagtgaaggtcctgggtaccaatcaagggacatgcttcctgatatgcatcatttggaggatgagctgaacagaaatcggagtagaggtacaattacttgcaggaatttttgtgaaaagcactgtcgctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="63866" stop="64976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64166" g_stop="64676" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E323193" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64166" e_stop="64676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAA-TTTTGTGAAAAGCAACTGTCGCTGGG</genome_strand>
        <mrna_strand>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAATTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTTGTGAAAAGC-ACTGTCGCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323118" ref_strand="+" ref_description="SGN-E323118 [cTOB-28-H1]">
      <seq>gaaggtaggagcaggagtcgcagcaggggacggggaaggggagaaggtaggagcaggagtcgcagcaggggacgggacaaatttaggaccaggagcagaagcaggagccgggacaggggtagtatgagagttcagaataggagtcgtagtcctcataatactaaacgtgatccatatgcatcaggtgatagaagagctagccttcatatatcttcccaggtatgcagaaattttgcagcggggaattgtaggagaggcagtgattgcaggttcattcatctagattctgccagtcatagggatgaaggtcattcagaggacaacttgtcagaaagattgggtagtcgacctgagcgtgggcatatctcaaggtataatgatagtgaaggtcctgggtaccaatcaagggacatgcttcctgatatgcatcatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="63866" stop="64900"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64166" g_stop="64600" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E323118" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64166" e_stop="64600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTG</genome_strand>
        <mrna_strand>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAATTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367737" ref_strand="+" ref_description="SGN-E367737 [cLPT-14-C10]">
      <seq>acgggacaagtttaggaccaggagcagaagcaggagccgggacaggggtagtatgagagttcagaataggagtcgtagtcctcataatactaaacgtgatccatatgcatcaggtgatagaagagctagccttcatacatcttcccatgtatgcagaaattttgcagcggggaattgtaggagaggcagtgattgcaggttcattcatctagattctgccagtcatagggatgaaggtcattcagaggacaacttgtcagaaagattgggtagtcgacctgagcgtgggcatatctcaaggtataatgatagtgaaggtcctgggtaccaatcaagggacatgcttcctgatatgcatcatttggaggatgagctgaacagaaatcggagtagaggtacaattacttgcaggaattttgtgaaaagcaactgtcgctggggtgcatcatgcagattttctcatgatggtgcctcaggtgataactatgacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="63937" stop="65028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64237" g_stop="64728" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E367737" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367737" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64237" e_stop="64728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAA</genome_strand>
        <mrna_strand>ACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATACATCTTCCCATGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATAACTATGACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324686" ref_strand="+" ref_description="SGN-E324686 [cTOC-8-E23]">
      <seq>caaatttaggaccaggagcagaagcaggagccgggacaggggtagtgtgagagttcagaataggagtcgtagtcctcataatactaaacgtgatccatatgcatcaggtgatagaagagctagccttcatatatcttcccaggtatgcagaaattttgcagcggggaattgtaggagaggcagtgattgcaggttcattcatctagattctgccagtcatagggatgaaggtcattcagaggacaacttgtcagaaagattgggtagtcgacctgagcgtgggcatatctcaaggtataatgatagtgaaggtcctgggtaccaatcaagggacatgcttcctgatatgcatcatttggaggatgagctgaacagaaatcggagtagaggtacaattacttgcaggaattttgtgaaaagcaactgtcgctggggtgcatcatgcagattttctcatgatggtgcctcaggtgattactatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="63943" stop="65025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64243" g_stop="64725" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="483" r_length="483" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E324686" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64243" e_stop="64725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGA</genome_strand>
        <mrna_strand>CAAATTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTGTGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E318101" ref_strand="+" ref_description="SGN-E318101 [cTOA-29-F7]">
      <seq>tcgctggggtgcatcatgcagattttctcatgatggtgcctcaggtgattactatgacaagggcactcggagtacatcctttgagcatggtcaggacaatcaagcaaccagaaccgggaaatcactttgtgagtactttgctgcaggaaagtgctacaaggataattgtgaattctctcacgatgccacatcaagaaatcatgaaattaggcccttggatgacattggtgagcaagtacatcaaatggaatcctgtccagcatctatgataaagaaattagaggaaggactgcaagaagcccaactacaaagtgtcttaaatccctctggtccttctggaatgctaccttcaaatcccatttcttcacttgttcatgctctatatggtcagaccaatcctgagatgagggttctagataactatcatcctccagatggcttagagctgaatacatctggcaactttaagttgcccccggacaattcattctatttggatagagatagtattaaggttcccatggaccaagtgaatcaaacatctactgttgatcctgaacttggaaataatgatcaaattgatgaagtgaagcagcaggagaatgaattagttgaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="64369" stop="65588"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64669" g_stop="65288" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="620" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E318101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64669" e_stop="65288"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTG</genome_strand>
        <mrna_strand>TCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E359265" ref_strand="+" ref_description="SGN-E359265 [cLHT-31-G19]">
      <seq>atggcttagagctgaatacatctggcaactttaagttgcccccggacaattcattctatttggatagagatagtattaaggttcccatggaccaagtgaatcaaacatctactgttgatcctgaacttggagataatgatcaaattaatgaagtgaagcagcaggagaatgaattagttgaagttgatgggaaggataaattagctccgggggagtccaaggatgtgcaagaaaatgatcatccaggagctatgaatctgcatggaaaggttgaggagggaagtggtaacaaagatgaaaaggtgatgcgattattcaaaaacgctctaatagagttcgtcaaggagatcctaaaacccatttggaaagaaggtaagatgagcagagaagttcataaaacaattgttaagaaggtggttgataaggtgactggtgcgattcaaggagaacaagtccctaagacgcaagagaagatagagcaatatctgtcccattcaaagcctaaaattaccaaacttgtacaggcatatgtggagcgacttctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="64803" stop="66091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65103" g_stop="65626" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65770" g_stop="65791" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="546" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E359265" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E359265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65103" e_stop="65626"/>
          <exon e_start="65770" e_stop="65791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGAAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAACTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAGGTGAGTTGCCTATCAAACCCTCCATTCCTCCAAAAAATGAAGTTTTATTAGACCTTCCTATCTGTATTACCATATTCTGTTTTTTCTCACATTGGGCTTAAAATGTTATTTTTTGTAAATATGGTTCGTTATTCTCTTGACAGGCATATGTGGAGCGACTTCTGA</genome_strand>
        <mrna_strand>ATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAGATAATGATCAAATTAATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGGAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAGCTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGTGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG...............................................................................................................................................GCATATGTGGAGCGACTTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E414549" ref_strand="-" ref_description="SGN-E414549 [STM-19-P23]">
      <seq>aggatgtgcaagaaaatgatcatccaggagctatggatcttcatggaaaggttgaagagggaagcggtaacaaagatgaaaaggtgatgcgattattcaaaaacgctctaatagagtttgttaaagagatcctaaaacccatatggaaagaaggtaagatgagcagagaagttcataaaccagttgttaagaaggtggttgataaggtgaccggtgcaattcaaggagaacaagtccctaagccgcaagagaagatagagcaatatctgtcctattcaaagcctaaaattaccaaacttgtacaggcatatgtggagcgacttctgaagaatgaagcttgagatgccgtactcccctttttttctggacaaatcaaattcaataaggacttgattttccaacatgtactagaaggtttagctatgttagatatctttgtttgctgaaatcacatatcctcatagttttcactagtgtgatagatttggtttagcaagccgttatatgttattccgaccatttattttctgatttacccatgtttgagcattatatgtaattggcctgtgcaatcttccaaaaaaaaaaaaaatatttggtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="65022" stop="66310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65322" g_stop="65626" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65770" g_stop="66008" g_length="239"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="555" r_length="250" r_score="0.858"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="594"/>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E414549" ref_strand="-">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E414549" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65322" e_stop="65626"/>
          <exon e_start="65770" e_stop="66008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATGTGCAAGAAAATGATCATCCAGGAACTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAGGTGAGTTGCCTATCAAACCCTCCATTCCTCCAAAAAATGAAGTTTTATTAGACCTTCCTATCTGTATTACCATATTCTGTTTTTTCTCACATTGGGCTTAAAATGTTATTTTTTGTAAATATGGTTCGTTATTCTCTTGACAGGCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATAT-C-C-------TCA-TAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTA-CCATGTTTGAGCATTATAT</genome_strand>
        <mrna_strand>AGGATGTGCAAGAAAATGATCATCCAGGAGCTATGGATCTTCATGGAAAGGTTGAAGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTTGTTAAAGAGATCCTAAAACCCATATGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAACCAGTTGTTAAGAAGGTGGTTGATAAGGTGACCGGTGCAATTCAAGGAGAACAAGTCCCTAAGCCGCAAGAGAAGATAGAGCAATATCTGTCCTATTCAAAGCCTAAAATTACCAAACTTGTACAG...............................................................................................................................................GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGATGCCGTACTCCCCTTTTTTTCTGGACAAATCAAATTCAATAAGGACTTGATTTTCCAACATGTACTAGAAGGTTTAGCTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTTTTCACTAGTGTGATAGATTTGGTTTAGCAAGCCGTTATATGTTATTCCGACCATTTATTTTCTGATTTACCCATGTTTGAGCATTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E354560" ref_strand="+" ref_description="SGN-E354560 [cTOS-17-I20]">
      <seq>gaaaaggtgatgcgattattcaaaaacgctctaatagagttcgtcaaggagatcctaaaacccatttggaaagaaggtaagatgagcagagaagttcataaaacaattgttaagaaggtggttgataaggtgactggtgcgattcaaggagaacaagtccctaagacgcaagagaagatagagcaatatctgtcccattcaaagcctaaaattaccaaacttgtacaggcatatgtggagcgacttctgaagaatgaagcttgaggtgccggactccccttctcttctggaaaattcaaattcaataaggacttgattttccaacatgtactggaaggtttagttatgttagatatctttgtttgctgaaatcacatatcctcatagtgtgatagatttggtttagcaagctgttttctgttattccgaccatttattttccgatttaccatgtttgagcattatatgttcctttcttatagattcaatcacatggtagttgtgctgatttctcagtctccctgcgttttcttgttgagtcgattgtagtcttaacttctttatgattttattagtgagtaccttgtttgtctgatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="65099" stop="66443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65399" g_stop="65626" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="228" r_length="228" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65770" g_stop="66140" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="599" r_length="371" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E354560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65399" e_stop="65626"/>
          <exon e_start="65770" e_stop="66140"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAGGTGAGTTGCCTATCAAACCCTCCATTCCTCCAAAAAATGAAGTTTTATTAGACCTTCCTATCTGTATTACCATATTCTGTTTTTTCTCACATTGGGCTTAAAATGTTATTTTTTGTAAATATGGTTCGTTATTCTCTTGACAGGCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGATATA</genome_strand>
        <mrna_strand>GAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG...............................................................................................................................................GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349703" ref_strand="+" ref_description="SGN-E349703 [cTOS-3-N5]">
      <seq>gcaagagaagatagagcaatatctgtcccattcaaagcctaaaattaccaaacttgtacaggcatatgtggagcgacttctgaagaatgaagcttgaggtgccggactccccttctcttctggaaaattcaaattcaataaggacttgattttccaacatgtactggaaggtttagttatgttagatatctttgtttgctgaaatcacatatcctcatagtgtgatagatttggtttagcaagctgttttctgttattccgaccatttattttccgatttaccatgtttgagcattatatgttcctttcttatagattcaatcacatggtagttgtgctgatttctcagtctccctgcgttttcttgttgagtcgattgtagtcttaacttctttatgattttattagtgagtaccttgtttgtctgaaannnnnaannaannnaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="65266" stop="66438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65566" g_stop="65626" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65770" g_stop="66137" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="429" r_length="368" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66138" i_stop="66283" i_length="146">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66284" g_stop="66313" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="459" r_length="30" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E349703" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349703" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65566" e_stop="65626"/>
          <exon e_start="65770" e_stop="66137"/>
          <exon e_start="66284" e_stop="66313"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAGGTGAGTTGCCTATCAAACCCTCCATTCCTCCAAAAAATGAAGTTTTATTAGACCTTCCTATCTGTATTACCATATTCTGTTTTTTCTCACATTGGGCTTAAAATGTTATTTTTTGTAAATATGGTTCGTTATTCTCTTGACAGGCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGATATAATATTCGGGTGTGTTCCAGTCTTTTACTAGTTGGAGTTTTTAGTTCATTTTCTTTCCTTATTTTATAAACTAGTTTCTGAGTACGTGCGTTGCATGTGTGTCCATTACAACGATTAAGTATATATCATTAGTAATAAAACAACAATTACAAAAAAAATAAAATAAAATAAAAA</genome_strand>
        <mrna_strand>GCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG...............................................................................................................................................GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGAA..................................................................................................................................................ANNNNNAANNAANNNAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352753" ref_strand="+" ref_description="SGN-E352753 [cTOS-11-F22]">
      <seq>gcaagagaagatagagcaatatctgtcccattcaaagcctaaaattaccaaacttgtacaggcatatgtggagcgacttctgaagaatgaagcttgaggtgccggactccccttctcttctggaaaattcaaattcaataaggacttgattttccaacatgtactggaaggtttagttatgttagatatctttgtttgctgaaatcacatatcctcatagtgtgatagatttggtttagcaagctgttttctgttattccgaccatttattttccgatttaccatgtttgagcattatatgttcctttcttatagattcaatcacatggtagttgtgctgatttctcagtctccctgcgttttcttgttgagtcgattgtagtcttaacttctttatgattttattagtgagtaccttgtttgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="65266" stop="66435"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65566" g_stop="65626" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65770" g_stop="66135" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="427" r_length="366" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E352753" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65566" e_stop="65626"/>
          <exon e_start="65770" e_stop="66135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAGGTGAGTTGCCTATCAAACCCTCCATTCCTCCAAAAAATGAAGTTTTATTAGACCTTCCTATCTGTATTACCATATTCTGTTTTTTCTCACATTGGGCTTAAAATGTTATTTTTTGTAAATATGGTTCGTTATTCTCTTGACAGGCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTG</genome_strand>
        <mrna_strand>GCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG...............................................................................................................................................GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="-" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="70692" stop="69657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70392" g_stop="69933" g_length="460"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="-" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70392" e_stop="69933"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACTATACACACAAAAAAAATAGTTTAATTTTTAATTTTTTAAACTAAGAAATGAAAGAAAACAACAAAATAAGAATAAGAAATTCAAATAATTACAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTTAATAATTTTTTT--AAAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCTACTTTTATAACGAGGG-TATATCAGCTCCAAATGATAAAGTTGAGGGGTATATCAGACCCTTTGATCTATTCCAAATAATATAATTG</genome_strand>
        <mrna_strand>TTATTGTAGATGACC-AATTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAAATATTTGAATTTTT-TTTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAGGTATATCAGACCCTTTTCCCTATTTTTTAAAATTTCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427787" ref_strand="+" ref_description="SGN-E427787 [STM-49-I7]">
      <seq>agggtatcatccaatacatgtgcttctggttactgagcatttcccaacccccaatctgttcacctgtaaagagttagttgtacgtgaaggcaatgcatggctatatgaacctaatctgaacactttaagagagaagctccacctccctgttgggtcatgtgaacttgcagttcctctcaaggctaaagcaaattggcactctggaaatgtaagacgagaagcctatgcaactattctccactcagcaaatttttatgtatgtggagccatagctgcagcacagagtattcgcttggcaggttcaacccgagatcttgtgatacttgttgatgagactatcagtgactaccacaggggtggtttagaggctgccggatggaagatccacacgataaagagaataaggaatcctaaagctgaacaggatgcctacaatgagtggaactatagcaaatttcgtctctggcagctgacagattatgacaaaatcatcttcattgatgcggatttgttgatactgagaaatattgattttctctttgagatgcctgaaataactgcaataggaaataaatgcaccctttttaattcaggcgtgatggtcgttgaaccatncaattgcacatttcagctgttgatggatcatatncatgagattgaatcatacaatggtggggatcaggggtatttgaacgaaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="77049" stop="78765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77349" g_stop="77536" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77537" i_stop="77951" i_length="415">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.376" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77952" g_stop="78465" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="702" r_length="514" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E427787" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77349" e_stop="77536"/>
          <exon e_start="77952" e_stop="78465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTATCATCCAATACATGTGCTTCTGGTTACTGAGCATTTCCCAACCCCCAATCTGTTCACCTGTAAAGAGTTAGTTGTACGTGAAGGCAATGCATGGCTATATGAACCTAATTTGAACACTTTAAGAGAGAAGCTCCACCTCCCTGTTGGATCATGTGAACTTGCAGTTCCTCTCAAGGCTAAAGGTTGGTTCCAGATGGTAGTTTTATGTCAGAACACTATAACTCTGATACTGTTTTTTATTTAACAATTAAATCTACCAATCTGACCATCCTTTAAAGTTTAAACTGACCCTTGCAAGACATTGCAGGGTCAAATTGAGGTAGGTGACATTGTTCCTTCCATATTTCAAAGAACTTTAGACTAAAGTTATTTTCCTTTTCTGAAAACATATTGTACAACTGTTTGTCTCGGCTTCTATCCATCTTACTGTTTTCTTTCATTTTCCTGGCAATTTGTGGTAGTGTGGTAGTGAGATTAGCAGTCGAGCACCATTTTATTATTCCATCTAAAATGAAAATAATGAGAGGATTAATCTCTAAGTTCAAGTTAATTTCTCGAGAAATGATATTCAGAATCTAACATCATAAGTTTCTGCAGCAAGTTGGCACTCTGGAAATGTAAGAAGAGAAGCCTATGCAACTATTCTCCACTCAGCTAATTTTTATGTATGTGGAGCCATAGCTGCAGCTCAGAGTATCCGCTTGGCAGGTTCAACCCGAGATCTTGTGATACTTGTTGATGAGTCTATCAGTGACTACCACAGGGGTGGTTTGGAGGCTGCTGGATGGAAGATCCACACGATAAAGAGAATAAGGAATCCTAAAGCTGAACAGGATGCCTACAATGAGTGGAACTATAGCAAATTTCGTCTTTGGCAGCTGACAGATTATGACAAAATCATCTTCATTGATGCAGATTTGTTAATATTGAGAAATATTGATTTTCTCTTTGAGATGCCTGAAATAACTGCAATAGGAAAT-AATGCAACCCTTTTTAATTCAGGTGTGATGGTCGTTGAACCATCAAATTGCACATTTCAGCTGTTGATGGATCATATTAATGAGATTGAATCGTACAATGGTGGGGATCAGGGGTATCTGAACGAAATCTT</genome_strand>
        <mrna_strand>AGGGTATCATCCAATACATGTGCTTCTGGTTACTGAGCATTTCCCAACCCCCAATCTGTTCACCTGTAAAGAGTTAGTTGTACGTGAAGGCAATGCATGGCTATATGAACCTAATCTGAACACTTTAAGAGAGAAGCTCCACCTCCCTGTTGGGTCATGTGAACTTGCAGTTCCTCTCAAGGCTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGGCACTCTGGAAATGTAAGACGAGAAGCCTATGCAACTATTCTCCACTCAGCAAATTTTTATGTATGTGGAGCCATAGCTGCAGCACAGAGTATTCGCTTGGCAGGTTCAACCCGAGATCTTGTGATACTTGTTGATGAGACTATCAGTGACTACCACAGGGGTGGTTTAGAGGCTGCCGGATGGAAGATCCACACGATAAAGAGAATAAGGAATCCTAAAGCTGAACAGGATGCCTACAATGAGTGGAACTATAGCAAATTTCGTCTCTGGCAGCTGACAGATTATGACAAAATCATCTTCATTGATGCGGATTTGTTGATACTGAGAAATATTGATTTTCTCTTTGAGATGCCTGAAATAACTGCAATAGGAAATAAATGC-ACCCTTTTTAATTCAGGCGTGATGGTCGTTGAACCATNCAATTGCACATTTCAGCTGTTGATGGATCATATNCATGAGATTGAATCATACAATGGTGGGGATCAGGGGTATTTGAACGAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477702" ref_strand="+" ref_description="SGN-E477702 [cSTD-1-B3]">
      <seq>agggtatcatccaatacatgtgcttctggttactgagcatttcccaacccccaatctgttcacctgtaaagagttagttgtacgtgaaggcaatgcatggctatatgaacctaatctgaacactttaagagagaagctccacctccctgttgggtcatgtgaacttgcagttcctctcaaggctaaagcaaattggcactctggaaatgtaagacgagaagcctatgcaactattctccactcagcaaatttttatgtatgtggagccatagctgcagcacagagtattcgcttggcaggttcaacccgagatcttgtgatacttgttgatgagactatcagtgactaccacaggggtggtttagaggctgccggatggaagatccacacgataaagagaataaggaatcctaaagctgaacaggatgcctacaatgagtggaactatagcaaatttcgtctctggcagctgacagattatgacaaaatcatcttcattgatgcggatttgttgatactgagaaatattgattttctctttgagatgcctgaaataactgcaataggaaataatgcaaccctttttaattcaggcgtgatggtcgttgaaccatcaaattgcacatttcagctgttgatggatcatatcaatgagattgaatctacaatggtggggatcaggggtatttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="77049" stop="78756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77349" g_stop="77536" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="188" r_length="188" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="77537" i_stop="77951" i_length="415">
            <donor d_prob="0.960" d_score="0.98"/>
            <acceptor a_prob="0.376" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="77952" g_stop="78456" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="692" r_length="504" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E477702" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77349" e_stop="77536"/>
          <exon e_start="77952" e_stop="78456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTATCATCCAATACATGTGCTTCTGGTTACTGAGCATTTCCCAACCCCCAATCTGTTCACCTGTAAAGAGTTAGTTGTACGTGAAGGCAATGCATGGCTATATGAACCTAATTTGAACACTTTAAGAGAGAAGCTCCACCTCCCTGTTGGATCATGTGAACTTGCAGTTCCTCTCAAGGCTAAAGGTTGGTTCCAGATGGTAGTTTTATGTCAGAACACTATAACTCTGATACTGTTTTTTATTTAACAATTAAATCTACCAATCTGACCATCCTTTAAAGTTTAAACTGACCCTTGCAAGACATTGCAGGGTCAAATTGAGGTAGGTGACATTGTTCCTTCCATATTTCAAAGAACTTTAGACTAAAGTTATTTTCCTTTTCTGAAAACATATTGTACAACTGTTTGTCTCGGCTTCTATCCATCTTACTGTTTTCTTTCATTTTCCTGGCAATTTGTGGTAGTGTGGTAGTGAGATTAGCAGTCGAGCACCATTTTATTATTCCATCTAAAATGAAAATAATGAGAGGATTAATCTCTAAGTTCAAGTTAATTTCTCGAGAAATGATATTCAGAATCTAACATCATAAGTTTCTGCAGCAAGTTGGCACTCTGGAAATGTAAGAAGAGAAGCCTATGCAACTATTCTCCACTCAGCTAATTTTTATGTATGTGGAGCCATAGCTGCAGCTCAGAGTATCCGCTTGGCAGGTTCAACCCGAGATCTTGTGATACTTGTTGATGAGTCTATCAGTGACTACCACAGGGGTGGTTTGGAGGCTGCTGGATGGAAGATCCACACGATAAAGAGAATAAGGAATCCTAAAGCTGAACAGGATGCCTACAATGAGTGGAACTATAGCAAATTTCGTCTTTGGCAGCTGACAGATTATGACAAAATCATCTTCATTGATGCAGATTTGTTAATATTGAGAAATATTGATTTTCTCTTTGAGATGCCTGAAATAACTGCAATAGGAAATAATGCAACCCTTTTTAATTCAGGTGTGATGGTCGTTGAACCATCAAATTGCACATTTCAGCTGTTGATGGATCATATTAATGAGATTGAATCGTACAATGGTGGGGATCAGGGGTATCTGAA</genome_strand>
        <mrna_strand>AGGGTATCATCCAATACATGTGCTTCTGGTTACTGAGCATTTCCCAACCCCCAATCTGTTCACCTGTAAAGAGTTAGTTGTACGTGAAGGCAATGCATGGCTATATGAACCTAATCTGAACACTTTAAGAGAGAAGCTCCACCTCCCTGTTGGGTCATGTGAACTTGCAGTTCCTCTCAAGGCTAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................CAAATTGGCACTCTGGAAATGTAAGACGAGAAGCCTATGCAACTATTCTCCACTCAGCAAATTTTTATGTATGTGGAGCCATAGCTGCAGCACAGAGTATTCGCTTGGCAGGTTCAACCCGAGATCTTGTGATACTTGTTGATGAGACTATCAGTGACTACCACAGGGGTGGTTTAGAGGCTGCCGGATGGAAGATCCACACGATAAAGAGAATAAGGAATCCTAAAGCTGAACAGGATGCCTACAATGAGTGGAACTATAGCAAATTTCGTCTCTGGCAGCTGACAGATTATGACAAAATCATCTTCATTGATGCGGATTTGTTGATACTGAGAAATATTGATTTTCTCTTTGAGATGCCTGAAATAACTGCAATAGGAAATAATGCAACCCTTTTTAATTCAGGCGTGATGGTCGTTGAACCATCAAATTGCACATTTCAGCTGTTGATGGATCATATCAATGAGATTGAATC-TACAATGGTGGGGATCAGGGGTATTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E481735" ref_strand="+" ref_description="SGN-E481735 [cSTD-19-G6]">
      <seq>tgacagattatgacaaaatcatcttcattgatgcggatttgttgatactgagaaatattgattttctctttgagatgcctgaaataactgcaataggaaataatgcaaccctttttaattcaggcgtgatggtcgttgaaccatcaaattgcacatttcagctgttgatggatcatatcaatgagattgaatcatacaatggtggggatcaggggtatttgaacgaaatattcacctggtggcataggatcccaaaacacatgaactttttgaaacattattgggaaggtgatgaggaggagaagaagcaaatgaaaacacgtctttttggtgctgatcctccagttctctatgttctgcactacttaggcctgaaaccttggttatgcttcagggactacgattgcaactggaatgtgggtaagttgcaggagtttgcaagtgatgtggcacacaggacgtggtggaaggtccatgatgccatgccagataacttacataaatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="77934" stop="79040"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78234" g_stop="78740" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="507" r_length="507" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E481735" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E481735" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78234" e_stop="78740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAGATTATGACAAAATCATCTTCATTGATGCAGATTTGTTAATATTGAGAAATATTGATTTTCTCTTTGAGATGCCTGAAATAACTGCAATAGGAAATAATGCAACCCTTTTTAATTCAGGTGTGATGGTCGTTGAACCATCAAATTGCACATTTCAGCTGTTGATGGATCATATTAATGAGATTGAATCGTACAATGGTGGGGATCAGGGGTATCTGAACGAAATCTTCACCTGGTGGCATAGGATCCCAAAACACATGAACTTTTTGAAACATTATTGGGAAGGTGATGAGGAGGAGAAAAAGCAAATGAAAACATCTCTTTTTGGTGCTGATCCTCCAGTTCTTTATGTCCTGCACTACTTAGGCCTGAAACCTTGGTTATGCTTCAGGGACTACGATTGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATT</genome_strand>
        <mrna_strand>TGACAGATTATGACAAAATCATCTTCATTGATGCGGATTTGTTGATACTGAGAAATATTGATTTTCTCTTTGAGATGCCTGAAATAACTGCAATAGGAAATAATGCAACCCTTTTTAATTCAGGCGTGATGGTCGTTGAACCATCAAATTGCACATTTCAGCTGTTGATGGATCATATCAATGAGATTGAATCATACAATGGTGGGGATCAGGGGTATTTGAACGAAATATTCACCTGGTGGCATAGGATCCCAAAACACATGAACTTTTTGAAACATTATTGGGAAGGTGATGAGGAGGAGAAGAAGCAAATGAAAACACGTCTTTTTGGTGCTGATCCTCCAGTTCTCTATGTTCTGCACTACTTAGGCCTGAAACCTTGGTTATGCTTCAGGGACTACGATTGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E455065" ref_strand="-" ref_description="SGN-E455065 [cSTS-25-O13]">
      <seq>aaacattattgggaaggtgatgaggaggagaagaagcaaatgaaaacacgtctttttggtgctgatcctccagttctctatgttctgcactacttaggcctgaaaccttggttatgcttcagggactacgattgcaactggaatgtgggtaagttgcaggagtttgcaagtgatgtggcacacaggacgtggtggaaggtccatgatgccatgccagataacttacataaatattgtttgcttaggtctaaacagaaggctgcactagagtgggatcgaagagaagctgagaaagctaacttttcagatggtcattggaagatcaaaataaaggacccacgtttggagacttgttttgaagaattttgcttctgggaaagcatgttatggcactggggcgaaacaaactggacagataatgcaacctcttcaccaacacttcccatggtcaatactgcttcactttcttctttgtaactaggaggttctgttactatacctcgctagtctgtaagtaatacagagtcacaacttgaatgtcaaccaatgccattagtatacatggtgtcaacactttccccacccttgaatatagtcttctttgcagctaaaaaaaaaaaaaaaaaaactcgagactagttcgctctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="78206" stop="79415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78506" g_stop="79115" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="610" polyA_stop="629"/>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E455065" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E455065" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="78506" e_stop="79115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACATTATTGGGAAGGTGATGAGGAGGAGAAAAAGCAAATGAAAACATCTCTTTTTGGTGCTGATCCTCCAGTTCTTTATGTCCTGCACTACTTAGGCCTGAAACCTTGGTTATGCTTCAGGGACTACGATTGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTAGGTCTAAACAGAAGGCTGCATTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTATTCAGATGGTCATTGGAAGATCAAAATAAAAGACCCACGTTTGGAAACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGGGAAACAAACTGGACAGATAATGCCACCTCTTCACCAACACCTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTGCTATACCTCGCTCGTCTGTAAGTAATACGGAGTCACAACTTGAATGTCAACCAATGGCCATTAGTACGCATGGTGTTCGCACTTGCCCTACCCTTGAATATAGTCCACTCTGCAGCT</genome_strand>
        <mrna_strand>AAACATTATTGGGAAGGTGATGAGGAGGAGAAGAAGCAAATGAAAACACGTCTTTTTGGTGCTGATCCTCCAGTTCTCTATGTTCTGCACTACTTAGGCCTGAAACCTTGGTTATGCTTCAGGGACTACGATTGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTAGGTCTAAACAGAAGGCTGCACTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTTTTCAGATGGTCATTGGAAGATCAAAATAAAGGACCCACGTTTGGAGACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGCGAAACAAACTGGACAGATAATGCAACCTCTTCACCAACACTTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTACTATACCTCGCTAGTCTGTAAGTAATACAGAGTCACAACTTGAATGTCAACCAAT-GCCATTAGTATACATGGTGTCAACACTTTCCCCACCCTTGAATATAGTCTTCTTTGCAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E736849" ref_strand="+" ref_description="SGN-E736849 [LC07CB12]">
      <seq>tgtaactggaatgtgggtaagttgcaggagtttgcaagtgatgtggcacacaggacgtggtggaaggtccatgatgccatgccagataacttacataaatattgtttgcttcgatcccactctaatgcagccttctgtttagagtgggatcgaagagaagctgagaaagctaactattcagatggtcattggaagatcaaaataaaagacccacgtttggaaacttgttttgaagaattttgcttctgggaaagcatgttatggcactggggggaaacaaactggacagataatgccacctcttcaccaacacctcccatggtcaatactgcttcactttcttctttgtaactaggaggttctgttgctatacctcgctcgtctgtaagtaatacggagtcacaacttgaatgtcaaccaatggccattagtacgcatggtgttcgcacttgccctacccttgaatatagtccactctgcagctgtgttgcttcaattgcttctcatcttttcttgtttcctatacgactgttttctcttgtcctcaagagatgttcttttcttaattgtccttttacttaagttataaggggagcattggagcaaacaattaagttgtctccgtatggattcgttctgtgggaacaccccttgatgcttgagtcagggtaggcagactacattaaaccccttggaatgtggcccttcctcagaccatgcgtgaacatgtgatgtttcgcgcacctggttgtcctttttctttataatagtggtaaaggtattgtattgaagttcagcaaaatgctgcaacgaggagtcactgtctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="78338" stop="79760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78638" g_stop="79460" g_length="823"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="829" r_length="829" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E736849" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>823</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E736849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78638" e_stop="79460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTAGGT-CTAAAC--A-GAAGGCTGC--ATTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTATTCAGATGGTCATTGGAAGATCAAAATAAAAGACCCACGTTTGGAAACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGGGAAACAAACTGGACAGATAATGCCACCTCTTCACCAACACCTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTGCTATACCTCGCTCGTCTGTAAGTAATACGGAGTCACAACTTGAATGTCAACCAATGGCCATTAGTACGCATGGTGTTCGCACTTGCCCTACCCTTGAATATAGTCCACTCTGCAGCTGTGTTGCTTCAATTGCTTCTCATCTTTTCTTGTTTCCTATACGACTGTTTTCTCTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCAT</genome_strand>
        <mrna_strand>TGTAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTCGATCCCACTCTAATGCAGCCTTCTGTTTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTATTCAGATGGTCATTGGAAGATCAAAATAAAAGACCCACGTTTGGAAACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGGGAAACAAACTGGACAGATAATGCCACCTCTTCACCAACACCTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTGCTATACCTCGCTCGTCTGTAAGTAATACGGAGTCACAACTTGAATGTCAACCAATGGCCATTAGTACGCATGGTGTTCGCACTTGCCCTACCCTTGAATATAGTCCACTCTGCAGCTGTGTTGCTTCAATTGCTTCTCATCTTTTCTTGTTTCCTATACGACTGTTTTCTCTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E711962" ref_strand="+" ref_description="SGN-E711962 [FB03CA07]">
      <seq>cttgtcctcaagagatgttcttttcttaattgtccttttacttaagttataaggggagcattggagcaaacaattaagttgtctccgtatggattcgttctgtgggaacaccccttgatgcttgagtcagggtaggcagactacattaaaccccttggaatgtggcccttcctcagaccatgcgtgaacatgtgatgtttcgcgcacctggttgtcctttttctttataatagtggtaaaggtattgtattgaagttcagcaaaatgctgcaacgaggagtcactgtctcattgagaaatctgtttgttttgaggcaccatattactgttgtagtgagtgtacaaacgaagcagacttacactatttatgtatgttgttgattgtagaaacccaatttttcatcaaaggaggtttggatgaatcacttgaatggtaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="78869" stop="79906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79169" g_stop="79601" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="436" polyA_stop="451"/>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E711962" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711962" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79169" e_stop="79601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCATTGAGAAATCTGTTTGTTTTGAGGCACCATATTACTGTTGTAGTGAGTGTACAAACGAAGCAGACTTACACTATTTATGTATGTTGTTGATTGTAGAAACCCAATTTTTCATCAAAGGAGGTTTGGATGAATCACTTGAATG</genome_strand>
        <mrna_strand>CTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCATTGAGAAATCTGTTTGTTTTGAGGCACCATATTACTGTTGTAGTGAGTGTACAAACGAAGCAGACTTACACTATTTATGTATGTTGTTGATTGTAGAAACCCAATTTTTCATCAAAGGAGGTTTGGATGAATCACTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577845" ref_strand="+" ref_description="SGN-E577845 [LE08AD04]">
      <seq>actcctttatttgaattaaaacttgatagaaaaacatcttccaaggctacccagatactcgacaaggtctggatggagtcgaggtccagttgctgacgctgatctttgcctccttgcttccactagggccccctttctcctcctcgttgatcacgacgttgcaaactttcccttcttctttggttagcgataaccccttcaagtcgtctgagatctcatcaatattgtctcccatgaaacctgctaatcgaaatgattgatacaatggcggtatgggtttcttcaatggatagtagtacccatctctaggtggtcgccaatcgagccattcttcggtggtgtatttataacccaaaccaaaagtggtggaatgtcgaacaggctgtataggttcgactatcccttgtaatttagcccccaaacctttcccaagctcgaaaccgaaccaggccatcatatctatgattttttggctgaaccaaggttgcaactcaatattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="91817" stop="92918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92117" g_stop="92618" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E577845" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577845" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92117" e_stop="92618"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGCGATGACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTTCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGGTAGTAGAACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTCAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</genome_strand>
        <mrna_strand>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATACTCGACAAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCTTCTTCTTTGGTTAGCGATAACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTCCCATGAAACCTGCTAATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGATAGTAGTACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTTAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437786" ref_strand="+" ref_description="SGN-E437786 [cSTA-5-C23]">
      <seq>caatgctgccacaggctttttaacctcatcataacaccaccgcactactcaccaaccccaagaaccaaaaacctgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcctttcttacccccttttccttttcctgttataaagatttgatttttttagtaagagagcatgtgaatgagcttaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagaggaggatttagtgaaggcattgcctggacaacctaaagttgggtttaggcaatatgcagggtatgtagaagtggatgtgaaagctgggaggagtttgttttactactttgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112034" stop="113136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112334" g_stop="112836" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E437786" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E437786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112334" e_stop="112836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGCTGCCACAGCCTTTTTAACCTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTG</genome_strand>
        <mrna_strand>CAATGCTGCCACAGGCTTTTTAACCTCATCATAACACCACCGCACTACTCACCAACCCCAAGAACCAAAAACCTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCCTTTCTTACCCCCTTTTCCTTTTCCTGTTATAAAGATTTGA--TT-TTTTTAGTAAGAGAGCATGTGAATGAGCTTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGGAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAAGTTGGGTTTAGGCAATATGCAGGGTATGTAGAAGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E325196" ref_strand="+" ref_description="SGN-E325196 [cTOC-13-P12]">
      <seq>tttttaacctcatcataacaccaccgcacaactcaccaaccccaagaaccaaatacctgcaaactctcattctatcctacttcttacctatttagttttcttgttaataattatctatatatagtaaaaaatagctttctgtttataaagtttccggaattcacgtgcttttcttatccccttttcctctttttcttataaagatttgattttatttttaataacagaggatgtgaatgagcctaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagagaaggatttagtgaaggcattgcctggacaacctaaggttggttttaggcaatatgcagggtatgtagatgtggatgtgaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112050" stop="113108"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112350" g_stop="112808" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="457" r_length="457" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E325196" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>459</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325196" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112350" e_stop="112808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTAACCTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCT</genome_strand>
        <mrna_strand>TTTTTAACCTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCAAACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313640" ref_strand="+" ref_description="SGN-E313640 [cTOA-12-O10]">
      <seq>ctcatcataacaccaccgcacaactcaccaaccccaagaaccaaatacctgcaaactctcattctatcctacttcttacctatttagttttcttgttaataattatctatatatagtaaaaaatagctttctgtttataaagtttccggaattcacgtgcttttcttatccccttttcctctttttcttataaagatttgattttatttttaataacagaggatgtgaatgagcctaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagagaaggatttagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112058" stop="113037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112358" g_stop="112737" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E313640" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313640" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112358" e_stop="112737"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGA</genome_strand>
        <mrna_strand>CTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCAAACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342345" ref_strand="+" ref_description="SGN-E342345 [cTOF-8-N17]">
      <seq>ataacaccaccgcacaactcaccaaccccaagaaccaaatacctgcaaactctcattctatcctacttcttacctatttagttttcttgttaataattatctatatatagtaaaaaatagctttctgtttataaagtttccggaattcacgtgcttttcttatccccttttcctctttttcttataaagatttgattttatttttaataacagaggatgtgaatgagcctaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtngtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagagaaggatttagtgaaggcattgcctggacaacctaaggttggttttaggcaatatgcagggtatgtagatgtggatgtgaaagctgggaggagtttgttttactactttgttgaagctgaggtgaaacctgatgagaaacctctaactctttggctcaatggagggccaggttgctcatcaattggtggaggtgcttttacagagttgggaccattctttccacaggtgacggtagaggacttcgaagaattcaaaatcatggaataaagctcaaatctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112064" stop="113947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112364" g_stop="112887" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112888" i_stop="113537" i_length="650">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113538" g_stop="113645" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="629" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113646" i_stop="113744" i_length="99">
            <donor d_prob="0.887" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113745" g_stop="113756" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="640" r_length="11" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E342345" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112364" e_stop="112887"/>
          <exon e_start="113538" e_stop="113645"/>
          <exon e_start="113745" e_stop="113756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGT-GTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAGGTGTGTTCTTTTTTTTTTTAACTTTTTAACTTTTGTTGATTCATTCTAAAGAAATGTGACTAGGAATTTTCTGTGTACTTTCATGTAGTTTATTTGGTAGTACTATTTGCTTGGGGTTTGAGCTTTTGTTTTTTGTTTGTTTGTTGTGTGTTGCTTCTTTTTTTTTTTAAATGGCTTTATGTATTCTTTTGATGTTTGGACCAAGTGTCACAAGCTTACAAGAGATTGAATTTGATATAGTGAGTTGGAGCTTAAAACTGTATATGAATTGAACCAATCTAGCGCTTCAATAATTAGAGTGAACTTGTAATAGAGTGAAAGTTTACATCTTAAATGAGTGCTGCCATTAAACTAAACAATTACATACTCGGTGTAATTTCACAAGTGGGGTCTAGGAGGGTGATCTGTATGCAGCCTTACCCCTCCGATACACCGTTGGCTTAACTGAAGCATATAGAAAATAATGGAGGAAAAGAACAGTAGCAGAGTCAAGAAAACTATAATGTCAAGAACAGTAAGCCTGATACTAAACTAGTGAAAATAAATTGCAGAAATGTACTTTTTTCTGTACTTCTCTTATGCTATGAATTTGGTAAATTATGTCAAGGCAAGAGTCAAGAACACTAAAATGTCTCATGTTTATGTTTCAGGGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGACGGTAGAGGTCTTCGAAGAAATTCAAAATCATGGAATAAAGGTATGCTAAGTAGGGTAGGGAGTAGCTGATTATAACATGTTTAGAACATTATCGAGTAATGAAAATGAACTTACCACTTCATGTCTTTGTCTACTGTAGCATCAAATCTCC</genome_strand>
        <mrna_strand>ATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCAAACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTNGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTT-CCACAGGTGACGGTAGAGGACTTCGAAG-AATTCAAAATCATGGAATAAAG...................................................................................................C-TCAAATCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486479" ref_strand="+" ref_description="SGN-E486479 [cSTE-22-C24]">
      <seq>aacaccaccgcactactcaccaaccccaagaaccaaaaacctgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcttttcttatctccttttcctctttctgttataaagatttgatttttttaataacagagcatgtgaatgagcctaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagaggaggatttagtgaaggcattgcctggacaacctaaggttgggtttaggcaatatgcagggtatgtagaagtggatgtgaaagctgggaggagtttgttttactactttgttgaagctgaggtgaaacctgatgagaaaccactagctctttggctcaatggagggccaggttgctcatcaattggtggaggtgcttttacagagttgggaccattctttcccacaggtgatggtagaggtcttcgaagaaatcaaaatcatggaataaagcatcaaatctcctctttgttgaatctccagctggagtangatggtcgtactcaaatacnagttcagactataccactggtgatgcaaaactgcaatggatatgcatatgttcatgatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112066" stop="114137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112366" g_stop="112887" g_length="522"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112888" i_stop="113537" i_length="650">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113538" g_stop="113645" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="622" r_length="107" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113646" i_stop="113744" i_length="99">
            <donor d_prob="0.887" d_score="0.96"/>
            <acceptor a_prob="0.948" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113745" g_stop="113837" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="714" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="113838" i_stop="113948" i_length="111">
            <donor d_prob="0.665" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="113949" g_stop="113976" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="742" r_length="28" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E486479" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112366" e_stop="112887"/>
          <exon e_start="113538" e_stop="113645"/>
          <exon e_start="113745" e_stop="113837"/>
          <exon e_start="113949" e_stop="113976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAGGTGTGTTCTTTTTTTTTTTAACTTTTTAACTTTTGTTGATTCATTCTAAAGAAATGTGACTAGGAATTTTCTGTGTACTTTCATGTAGTTTATTTGGTAGTACTATTTGCTTGGGGTTTGAGCTTTTGTTTTTTGTTTGTTTGTTGTGTGTTGCTTCTTTTTTTTTTTAAATGGCTTTATGTATTCTTTTGATGTTTGGACCAAGTGTCACAAGCTTACAAGAGATTGAATTTGATATAGTGAGTTGGAGCTTAAAACTGTATATGAATTGAACCAATCTAGCGCTTCAATAATTAGAGTGAACTTGTAATAGAGTGAAAGTTTACATCTTAAATGAGTGCTGCCATTAAACTAAACAATTACATACTCGGTGTAATTTCACAAGTGGGGTCTAGGAGGGTGATCTGTATGCAGCCTTACCCCTCCGATACACCGTTGGCTTAACTGAAGCATATAGAAAATAATGGAGGAAAAGAACAGTAGCAGAGTCAAGAAAACTATAATGTCAAGAACAGTAAGCCTGATACTAAACTAGTGAAAATAAATTGCAGAAATGTACTTTTTTCTGTACTTCTCTTATGCTATGAATTTGGTAAATTATGTCAAGGCAAGAGTCAAGAACACTAAAATGTCTCATGTTTATGTTTCAGGGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGACGGTAGAGGTCTTCGAAGAAATTCAAAATCATGGAATAAAGGTATGCTAAGTAGGGTAGGGAGTAGCTGATTATAACATGTTTAGAACATTATCGAGTAATGAAAATGAACTTACCACTTCATGTCTTTGTCTACTGTAGCATCAAATCTCCTCTTTGTTGAATCTCCAGCTGGAGTAGGATGGTCGTACTCAAATACAAGTTCAGACTATACCACTGGTGATGCAAAGACCGGTAAAACAAATAAGCAAAGATGCTGTGATCAAGCATTAGCTATATTTGAATATCAGATTTAAGAGTTAATCCTACCTAATAGCTGCTGTTATTCCTTGTTTCTACTGGCAGCAATGGATATGCACATGTTCATGATGGA</genome_strand>
        <mrna_strand>AACACCACCGCACTACTCACCAACCCCAAGAACCAAAAACCTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCTTTTCTTATCTCCTTTTCCTCTTTCTGTTATAAAGATTTGA--TT-TTTTTAATAACAGAGCATGTGAATGAGCCTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGGAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGGTTTAGGCAATATGCAGGGTATGTAGAAGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCACTAGCTCTTTGGCTCAATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGATGGTAGAGGTCTTCGAAGAAA-TCAAAATCATGGAATAAAG...................................................................................................CATCAAATCTCCTCTTTGTTGAATCTCCAGCTGGAGTANGATGGTCGTACTCAAATACNAGTTCAGACTATACCACTGGTGATGCAAA-ACTG...............................................................................................................CAATGGATATGCATATGTTCATGATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486559" ref_strand="+" ref_description="SGN-E486559 [cSTE-22-D23]">
      <seq>aacaccaccgcactactcaccaaccctaagaaccaaaaatttgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcttttcttatctccttttcctctttctgttataaagatttgatttttttaataacagagcatgtgaatgagcctaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagaggaggatttagtgaaggcattgcctggacaacctaaggttgggtttaggcaatatgcaaggtatgtagaagtggatgtgaaaactgggaggagtttgttttactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112066" stop="113132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112366" g_stop="112832" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="460" r_length="460" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E486559" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E486559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112366" e_stop="112832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTT</genome_strand>
        <mrna_strand>AACACCACCGCACTACTCACCAACCCTAAGAACCAAAAATTTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCTTTTCTTATCTCCTTTTCCTCTTTCTGTTATAAAGATTTGA--TT-TTTTTAATAACAGAGCATGTGAATGAGCCTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGGAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGGTTTAGGCAATATGCAAGGTATGTAGAAGTGGATGTGAAAACTGGGAGGAGTTTGTTTTACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473007" ref_strand="+" ref_description="SGN-E473007 [cSTB-30-B16]">
      <seq>caccaccgcactactcaccaaccccaagaaccaaaaacctgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcctttcttacccccttttcctttttctgttataaagatttgatttttttagtaagagagcatgtgaatgagcttaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112068" stop="113013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112368" g_stop="112713" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E473007" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E473007" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112368" e_stop="112713"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAG</genome_strand>
        <mrna_strand>CACCACCGCACTACTCACCAACCCCAAGAACCAAAAACCTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCCTTTCTTACCCCCTTTTCCTTTTTCTGTTATAAAGATTTGA--TT-TTTTTAGTAAGAGAGCATGTGAATGAGCTTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E484366" ref_strand="+" ref_description="SGN-E484366 [cSTE-13-G17]">
      <seq>cgaggactccaaccaccaccgcactattcacccaaccccaagaaccaaaaacctgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcctttcttacccccttttccttttcctgttataaagatttgatttttttagtaagagagcatgtgaatgagcttaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagaggaggatttagtgaaggcattgcctggacaacctaaggttgggtttaggcaatatgcagggtatgtagaagtggatgtgaaagctgggaggagtttgttttactactttgttgaagctgaggtgaaacctgatgagaaaccactagctctttggctcaatggagggccaggttgctcatcaattggtggaggtgcttttacagagttgggaccattctttcccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112063" stop="113898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112369" g_stop="112887" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="527" r_length="513" r_score="0.931"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112888" i_stop="113537" i_length="650">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113538" g_stop="113598" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="588" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E484366" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112369" e_stop="112887"/>
          <exon e_start="113538" e_stop="113598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCACCGCACAACTCACC-AACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAGGTGTGTTCTTTTTTTTTTTAACTTTTTAACTTTTGTTGATTCATTCTAAAGAAATGTGACTAGGAATTTTCTGTGTACTTTCATGTAGTTTATTTGGTAGTACTATTTGCTTGGGGTTTGAGCTTTTGTTTTTTGTTTGTTTGTTGTGTGTTGCTTCTTTTTTTTTTTAAATGGCTTTATGTATTCTTTTGATGTTTGGACCAAGTGTCACAAGCTTACAAGAGATTGAATTTGATATAGTGAGTTGGAGCTTAAAACTGTATATGAATTGAACCAATCTAGCGCTTCAATAATTAGAGTGAACTTGTAATAGAGTGAAAGTTTACATCTTAAATGAGTGCTGCCATTAAACTAAACAATTACATACTCGGTGTAATTTCACAAGTGGGGTCTAGGAGGGTGATCTGTATGCAGCCTTACCCCTCCGATACACCGTTGGCTTAACTGAAGCATATAGAAAATAATGGAGGAAAAGAACAGTAGCAGAGTCAAGAAAACTATAATGTCAAGAACAGTAAGCCTGATACTAAACTAGTGAAAATAAATTGCAGAAATGTACTTTTTTCTGTACTTCTCTTATGCTATGAATTTGGTAAATTATGTCAAGGCAAGAGTCAAGAACACTAAAATGTCTCATGTTTATGTTTCAGGGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCAC</genome_strand>
        <mrna_strand>ACCACCGCACTATTCACCCAACCCCAAGAACCAAAAACCTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCCTTTCTTACCCCCTTTTCCTTTTCCTGTTATAAAGATTTGA--TT-TTTTTAGTAAGAGAGCATGTGAATGAGCTTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGGAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGGTTTAGGCAATATGCAGGGTATGTAGAAGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCACTAGCTCTTTGGCTCAATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485173" ref_strand="+" ref_description="SGN-E485173 [cSTE-16-H16]">
      <seq>ccaccgcactactcaccaaccccaagaaccaaaaacctgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcttttcttatctccttttcctctttctgttataaagatttgatttttttaataacagagcatgtgaatgagcctaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtggtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagaggaggatttagtgaaggcattgcctggacaacctaaggttgggtttaggcaatatgcagggtatgtagaagtggatgtgaaagctgggaggagtttgttttactactttgttgaagctgaggtgaaacctgatgagaaaccactagctctttggctcaatggagggccaggttgctcatcaattggtggaggtgcttttacagagttgggaccattctttcccacaggtgatggtagaggtcttcgaagaaattcaaaatcatggaataaagcatcaaatctcctctttgttgaatctccagctggagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112070" stop="114081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112370" g_stop="112887" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112888" i_stop="113537" i_length="650">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113538" g_stop="113645" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="619" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113646" i_stop="113744" i_length="99">
            <donor d_prob="0.887" d_score="0.98"/>
            <acceptor a_prob="0.948" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113745" g_stop="113781" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="656" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E485173" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E485173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112370" e_stop="112887"/>
          <exon e_start="113538" e_stop="113645"/>
          <exon e_start="113745" e_stop="113781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAGGTGTGTTCTTTTTTTTTTTAACTTTTTAACTTTTGTTGATTCATTCTAAAGAAATGTGACTAGGAATTTTCTGTGTACTTTCATGTAGTTTATTTGGTAGTACTATTTGCTTGGGGTTTGAGCTTTTGTTTTTTGTTTGTTTGTTGTGTGTTGCTTCTTTTTTTTTTTAAATGGCTTTATGTATTCTTTTGATGTTTGGACCAAGTGTCACAAGCTTACAAGAGATTGAATTTGATATAGTGAGTTGGAGCTTAAAACTGTATATGAATTGAACCAATCTAGCGCTTCAATAATTAGAGTGAACTTGTAATAGAGTGAAAGTTTACATCTTAAATGAGTGCTGCCATTAAACTAAACAATTACATACTCGGTGTAATTTCACAAGTGGGGTCTAGGAGGGTGATCTGTATGCAGCCTTACCCCTCCGATACACCGTTGGCTTAACTGAAGCATATAGAAAATAATGGAGGAAAAGAACAGTAGCAGAGTCAAGAAAACTATAATGTCAAGAACAGTAAGCCTGATACTAAACTAGTGAAAATAAATTGCAGAAATGTACTTTTTTCTGTACTTCTCTTATGCTATGAATTTGGTAAATTATGTCAAGGCAAGAGTCAAGAACACTAAAATGTCTCATGTTTATGTTTCAGGGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGACGGTAGAGGTCTTCGAAGAAATTCAAAATCATGGAATAAAGGTATGCTAAGTAGGGTAGGGAGTAGCTGATTATAACATGTTTAGAACATTATCGAGTAATGAAAATGAACTTACCACTTCATGTCTTTGTCTACTGTAGCATCAAATCTCCTCTTTGTTGAATCTCCAGCTGGAGT</genome_strand>
        <mrna_strand>CCACCGCACTACTCACCAACCCCAAGAACCAAAAACCTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCTTTTCTTATCTCCTTTTCCTCTTTCTGTTATAAAGATTTGA--TT-TTTTTAATAACAGAGCATGTGAATGAGCCTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGGAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGGTTTAGGCAATATGCAGGGTATGTAGAAGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCACTAGCTCTTTGGCTCAATGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGATGGTAGAGGTCTTCGAAGAAATTCAAAATCATGGAATAAAG...................................................................................................CATCAAATCTCCTCTTTGTTGAATCTCCAGCTGGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362511" ref_strand="+" ref_description="SGN-E362511 [cLPP-1-E5]">
      <seq>caaaaacctgcaaactctcattccatcctacttcttacctatttagttttcttgttactgttatctatatatagcaaatattgctttctgtttaaaaagtatccggaattcacgtgcctttcttacccccttttccttttcctgttataaagatttgatttttttagtaagagagcatgtgaatgagcttaatttgaagtgttttagagaaaaagagggtaaagattgaatctttatgaggtttagtgagatgggtgtgtagtggttttgtggattggtcattttgggtttggtaattggaggaaaagggtatccagaggaggatttagtgaaggcattgcctggacaacctaaggttgggtttaggcaatatgcatggtatgtagaagtggatgtgaaagctgggaggagtttgttttactacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="112099" stop="113132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112399" g_stop="112832" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E362511" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112399" e_stop="112832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTT</genome_strand>
        <mrna_strand>CAAAAACCTGCAAACTCTCATTCCATCCTACTTCTTACCTATTTAGTTTTCTTGTTACT-GTTATCTATATATAG-CAAATATTGCTTTCTGTTTAAAAAGTATCCGGAATTCACGTGCCTTTCTTACCCCCTTTTCCTTTTCCTGTTATAAAGATTTGA--TT-TTTTTAGTAAGAGAGCATGTGAATGAGCTTAA--TTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTAGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGGAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGGTTTAGGCAATATGCATGGTATGTAGAAGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470261" ref_strand="+" ref_description="SGN-E470261 [cSTB-17-B15]">
      <seq>tgcaagttcaacattaaaggagttgccattgggaatgggctggggagacttgatcgagatgttcctgcaacctatgaatacttttggtctcatggaatgatttctgatgaagtaggcctaacaattatgaatcagggtgactttgacgattatacatttggcagtccacacaatgtttcacaagcatgcaataatgccatatctgaagcaaataccattgttagtgaatatataaataactatgatgtaatccttgatgtgtgctatccgtctatagtggaacaagaactgcgattaaggaaaatggctactaaaattagtgtaggtgttgatgtatgcatgacctatgaaaggcgcttctattttaaccttccggaggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="114443" stop="115622"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114743" g_stop="114769" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114770" i_stop="114886" i_length="117">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114887" g_stop="115165" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="306" r_length="279" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115166" i_stop="115247" i_length="82">
            <donor d_prob="0.633" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115248" g_stop="115322" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="381" r_length="75" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E470261" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114743" e_stop="114769"/>
          <exon e_start="114887" e_stop="115165"/>
          <exon e_start="115248" e_stop="115322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGTTCAACATTAAAGGAGTTGCAGTAAGCGAACTTTTTACCCCCCTTATGCATACCTTAATTAATTTCTTTATCTTCATTCTTATCTGAAGCAATTTTTCTGTGTGTATGTTCGTTAAACATTTTCATTTTCTTTCTCAGATTGGGAATCCACTTCTGAGACTTGATCGTGATGTTCCCGCAACCTATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAGTAGGCCTAACAATTATGAATCAGTGTGACTTTGACGATTATACCTTTGGCAGTCCACACAATGTTTCACAAGCATGCAATAATGCCATATCTGAAGCAAATACCATTGTTGGTGAATATATAAATAACTATGATGTGATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATGGTATCTGGTTCCGTTCATTCACTCAACTTCTTTATAGCTGTGTTTCTACTGGAACTTATTAATAGTGCTTTTCCCTTTGCAGGCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGCTATGAAAGGCGTTTCTATTTTAACCTTCCGGAGGTT</genome_strand>
        <mrna_strand>TGCAAGTTCAACATTAAAGGAGTTGCC.....................................................................................................................ATTGGGAATGGGCTGGGGAGACTTGATCGAGATGTTCCTGCAACCTATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAGTAGGCCTAACAATTATGAATCAGGGTGACTTTGACGATTATACATTTGGCAGTCCACACAATGTTTCACAAGCATGCAATAATGCCATATCTGAAGCAAATACCATTGTTAGTGAATATATAAATAACTATGATGTAATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAACTGCGATTAAGGAAAATG..................................................................................GCTACTAAAATTAGTGTAGGTGTTGATGTATGCATGACCTATGAAAGGCGCTTCTATTTTAACCTTCCGGAGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E470400" ref_strand="+" ref_description="SGN-E470400 [cSTB-18-G15]">
      <seq>tacaagttcaacattaaaggagttgcaattgggaatccgcttctgagacttgatcgtgatgttcctgcaacctatgaatacttttggtctcatggaatgatttctgatgaagtaggcctaacaattatgaatcagtgtgactttgacgattatacatttggcagtccacacaatgtttcacaagcatgcaataatgccatatctgaagcaaataccattgttagtgaatatataaataactatgatgtaatccttgatgtgtgctatccgtctatagtggaacaagagctgcgattaaagaaaatggctactaaaattagtgtaggtgttgatgtatgcatgacctatgaaaggcgcttctattttaaccttccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="114443" stop="115616"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114743" g_stop="114769" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114770" i_stop="114886" i_length="117">
            <donor d_prob="0.994" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114887" g_stop="115165" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="306" r_length="279" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115166" i_stop="115247" i_length="82">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115248" g_stop="115316" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="375" r_length="69" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E470400" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E470400" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114743" e_stop="114769"/>
          <exon e_start="114887" e_stop="115165"/>
          <exon e_start="115248" e_stop="115316"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAGTTCAACATTAAAGGAGTTGCAGTAAGCGAACTTTTTACCCCCCTTATGCATACCTTAATTAATTTCTTTATCTTCATTCTTATCTGAAGCAATTTTTCTGTGTGTATGTTCGTTAAACATTTTCATTTTCTTTCTCAGATTGGGAATCCACTTCTGAGACTTGATCGTGATGTTCCCGCAACCTATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAGTAGGCCTAACAATTATGAATCAGTGTGACTTTGACGATTATACCTTTGGCAGTCCACACAATGTTTCACAAGCATGCAATAATGCCATATCTGAAGCAAATACCATTGTTGGTGAATATATAAATAACTATGATGTGATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATGGTATCTGGTTCCGTTCATTCACTCAACTTCTTTATAGCTGTGTTTCTACTGGAACTTATTAATAGTGCTTTTCCCTTTGCAGGCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGCTATGAAAGGCGTTTCTATTTTAACCTTCCG</genome_strand>
        <mrna_strand>TACAAGTTCAACATTAAAGGAGTTGCA.....................................................................................................................ATTGGGAATCCGCTTCTGAGACTTGATCGTGATGTTCCTGCAACCTATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAGTAGGCCTAACAATTATGAATCAGTGTGACTTTGACGATTATACATTTGGCAGTCCACACAATGTTTCACAAGCATGCAATAATGCCATATCTGAAGCAAATACCATTGTTAGTGAATATATAAATAACTATGATGTAATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATG..................................................................................GCTACTAAAATTAGTGTAGGTGTTGATGTATGCATGACCTATGAAAGGCGCTTCTATTTTAACCTTCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609142" ref_strand="+" ref_description="SGN-E609142 [25144]">
      <seq>tgacgattatacatttggcagtccacacaatgtttcacaagcatgcaataatgccatatctgaagcaaataccattgttagtgaatatataaataactatgatgtaatccttgatgtgtgctatccgtctatagtggaacaagagctgcgattaaagaaaatggctactaaaattagtgtaggtgttgatgtatgcatgacctatgaaaggcgcttctattttaaccttccggaggttcagaaagcccttcatgcaaataggacgaacttgccttatacctggtcgatgtgcagcaatattctgaagtacagtgacacagatggaaacatcaatattcttccattgcttaagagaataatcgaaaaccatatccctgtttggattttcagcggagaccaagattctgttgtgccattgcttggatccaggacccttgtacgcgagctagctcatgacatggggttcaagattacagtcccttatggagcttggtttcacaaaggacaggtgggaggctggcaaacagagtatggcaacttgttgacctttgccactgttagaggtgctgcacatatggtaccatatgcacaacctgcaagagctttgcatctgtttagttcatttatacgtggccggaggctcccaaacaacacacgttccctccatcgaacgacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="114703" stop="116454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115003" g_stop="115165" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115166" i_stop="115247" i_length="82">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115248" g_stop="115381" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="297" r_length="134" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115382" i_stop="115581" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115582" g_stop="115674" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="390" r_length="93" r_score="0.914"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115675" i_stop="115771" i_length="97">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115772" g_stop="115889" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="508" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115890" i_stop="115987" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115988" g_stop="116154" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="677" r_length="169" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E609142" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115003" e_stop="115165"/>
          <exon e_start="115248" e_stop="115381"/>
          <exon e_start="115582" e_stop="115674"/>
          <exon e_start="115772" e_stop="115889"/>
          <exon e_start="115988" e_stop="116154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACGATTATACCTTTGGCAGTCCACACAATGTTTCACAAGCATGCAATAATGCCATATCTGAAGCAAATACCATTGTTGGTGAATATATAAATAACTATGATGTGATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATGGTATCTGGTTCCGTTCATTCACTCAACTTCTTTATAGCTGTGTTTCTACTGGAACTTATTAATAGTGCTTTTCCCTTTGCAGGCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGCTATGAAAGGCGTTTCTATTTTAACCTTCCGGAGGTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGCCTTATACCTGGTCGATGTGCAGCAAGTAAGTCTGTAAATTATCAAGTCCACAATATTGAACCATAAACAGACACACAATAACAGATTACATCTTTGATATTAACTATTTCACTAGCAATTTAGAGCCTTCGACTTCTAAACCTACTATGTCAAAGCCCATAGATTTAATGAACCATTATAAGGTATTTGTAGATTATAACTAATGGATTATGACTTCTATTGCAGTGTTCTCAAGTACAGCGACACAGATGGAAACATCAATATTCTTCCGTTGCTCAAAAGAATAATCGAAAAACATATTCCTGTTTGGATTTTCAGGTAAAGATTCCAAAATGGACAAAAATCCACAATCTTGCTCCGTTTTTCCTAGTACCAAAGTCAACGGTGCTTGATTCTGAATTATACTCGCTTGCAGCGGAGACCAAGATTCTGTTGTGCCATTGCTTGGATCCAGGACCCTTGTACGCGAGCTAGCTCATGACATGGGGTTCAAGATTACAGTCCCTTATGGAGCTTGGTTTCACAAAGGACAGGTAACACACTCTCCTCTGATATCAAACATTTCCTTCCAAGTTCCACCAACGGTTGATGAGAAGCTGTAAGTATAACCATTTGTTTGTCTTTTAAACAGGTAGGAGGATGGCAAACGGAGTATGGCAATCTGTTGACCTTTGCCACTGTTAGAGGTGCTGCACATATGGTACCATATGCACAACCCGCAAGAGCTTTGCATCTGTTTAGTTCATTTATACGTGGCCGGAGGCTCCCAAACAACACACG-TCCCTCCATCG-ACGACTA</genome_strand>
        <mrna_strand>TGACGATTATACATTTGGCAGTCCACACAATGTTTCACAAGCATGCAATAATGCCATATCTGAAGCAAATACCATTGTTAGTGAATATATAAATAACTATGATGTAATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATG..................................................................................GCTACTAAAATTAGTGTAGGTGTTGATGTATGCATGACCTATGAAAGGCGCTTCTATTTTAACCTTCCGGAGGTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGCCTTATACCTGGTCGATGTGCAGCAA........................................................................................................................................................................................................TATTCTGAAGTACAGTGACACAGATGGAAACATCAATATTCTTCCATTGCTTAAGAGAATAATCGAAAACCATATCCCTGTTTGGATTTTCAG.................................................................................................CGGAGACCAAGATTCTGTTGTGCCATTGCTTGGATCCAGGACCCTTGTACGCGAGCTAGCTCATGACATGGGGTTCAAGATTACAGTCCCTTATGGAGCTTGGTTTCACAAAGGACAG..................................................................................................GTGGGAGGCTGGCAAACAGAGTATGGCAACTTGTTGACCTTTGCCACTGTTAGAGGTGCTGCACATATGGTACCATATGCACAACCTGCAAGAGCTTTGCATCTGTTTAGTTCATTTATACGTGGCCGGAGGCTCCCAAACAACACACGTTCCCTCCATCGAACGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286084" ref_strand="+" ref_description="SGN-E286084 [cLES-13-I4]">
      <seq>aactatgatgtgatccttgatgtgtgctatccgtctatagtggaacaagagctgcgattaaagaaaatggctactaaaattagtgtaggtgttgatgtgtgcatgagctatgaaaggcgtttctattttaaccttccggaggttcagaaagcccttcatgcaaataggacgaacttgnnccttatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="114797" stop="115655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115097" g_stop="115165" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115166" i_stop="115247" i_length="82">
            <donor d_prob="0.633" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115248" g_stop="115363" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="187" r_length="118" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E286084" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115097" e_stop="115165"/>
          <exon e_start="115248" e_stop="115363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTATGATGTGATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATGGTATCTGGTTCCGTTCATTCACTCAACTTCTTTATAGCTGTGTTTCTACTGGAACTTATTAATAGTGCTTTTCCCTTTGCAGGCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGCTATGAAAGGCGTTTCTATTTTAACCTTCCGGAGGTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTG--CCTTATAC</genome_strand>
        <mrna_strand>AACTATGATGTGATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATG..................................................................................GCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGCTATGAAAGGCGTTTCTATTTTAACCTTCCGGAGGTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGNNCCTTATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E555324" ref_strand="-" ref_description="SGN-E555324 [cTSC-1-J8]">
      <seq>taaaagaaaatggctactaaaattagtgtaggtgttgatgtgtgcatgagttatgaaagggcgtttctattttaaccttccggaggttcagaaagcccttcatgcaaataggacgaacttgccttatacctggtcgatgtgcagcaatgttctcaagtacagcgacacagatggaaacatcaatattcttccgttgctcaaaagaataatcgaaaaccatattcctgtttggattttcagcggagaccaagattctgttgtgccattgcttggatccaggacccttgtacgcgagctagctcatgacatggggttcaagattacagtcccttatggagcttggtttcacaaaggacaggtaggaggatggcaaacggagtatggcaatctgttgacctttgccactgttagaggtgctgcacatatggtaccatatgcacaacctgcaagagctttgcatctgtttagttcatttatacgtggccggaggctcccaaacaacacacgtccctccatcgacgactaggaaaaagcctccaatgagcactttaaagttggttataggtatagttacttgagtgaggatgaatattagggacttcctatataaacaggaagaaacaaaaccattgcattgataattggctttgaagtagctgaagaagattccctagattgacagtgtgatagagataggggaacatttcttttatcttaaattaaatttctttgaatgaaataaagaaagcaagtttattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="114947" stop="116689"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115154" g_stop="115165" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115166" i_stop="115247" i_length="82">
            <donor d_prob="0.633" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115248" g_stop="115381" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="147" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115382" i_stop="115581" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115582" g_stop="115674" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="240" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115675" i_stop="115771" i_length="97">
            <donor d_prob="0.955" d_score="0.98"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115772" g_stop="115889" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="358" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="115890" i_stop="115987" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="115988" g_stop="116389" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="759" r_length="401" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E555324" ref_strand="-">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E555324" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="115154" e_stop="115165"/>
          <exon e_start="115248" e_stop="115381"/>
          <exon e_start="115582" e_stop="115674"/>
          <exon e_start="115772" e_stop="115889"/>
          <exon e_start="115988" e_stop="116389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAGAAAATGGTATCTGGTTCCGTTCATTCACTCAACTTCTTTATAGCTGTGTTTCTACTGGAACTTATTAATAGTGCTTTTCCCTTTGCAGGCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGCTATGAAA-GGCGTTTCTATTTTAACCTTCCGGAGGTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGCCTTATACCTGGTCGATGTGCAGCAAGTAAGTCTGTAAATTATCAAGTCCACAATATTGAACCATAAACAGACACACAATAACAGATTACATCTTTGATATTAACTATTTCACTAGCAATTTAGAGCCTTCGACTTCTAAACCTACTATGTCAAAGCCCATAGATTTAATGAACCATTATAAGGTATTTGTAGATTATAACTAATGGATTATGACTTCTATTGCAGTGTTCTCAAGTACAGCGACACAGATGGAAACATCAATATTCTTCCGTTGCTCAAAAGAATAATCGAAAAACATATTCCTGTTTGGATTTTCAGGTAAAGATTCCAAAATGGACAAAAATCCACAATCTTGCTCCGTTTTTCCTAGTACCAAAGTCAACGGTGCTTGATTCTGAATTATACTCGCTTGCAGCGGAGACCAAGATTCTGTTGTGCCATTGCTTGGATCCAGGACCCTTGTACGCGAGCTAGCTCATGACATGGGGTTCAAGATTACAGTCCCTTATGGAGCTTGGTTTCACAAAGGACAGGTAACACACTCTCCTCTGATATCAAACATTTCCTTCCAAGTTCCACCAACGGTTGATGAGAAGCTGTAAGTATAACCATTTGTTTGTCTTTTAAACAGGTAGGAGGATGGCAAACGGAGTATGGCAATCTGTTGACCTTTGCCACTGTTAGAGGTGCTGCACATATGGTACCATATGCACAACCCGCAAGAGCTTTGCATCTGTTTAGTTCATTTATACGTGGCCGGAGGCTCCCAAACAACACACGTCCCTCCATCGACGACTAGGAAAAAGCCTCTCCAATGAGCACTTTAAAGTTGGTTATAGGTATAGTTACTTGAGTGAGGATGAATATTAGGGACTTCCTATATAAACAGGAAGAAACAAAACCATTGCATTGATAATTGGCTTTGAAGTAGCTGAAGAAGATTTCCTAGATTGACAGTGTGATAGAGATAGGGGAACATATC-TTTATCTTAAATTAAATTTCTTTGAATGAAATAAAGAAAGCAAGTTCATTC</genome_strand>
        <mrna_strand>TAAAAGAAAATG..................................................................................GCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGTTATGAAAGGGCGTTTCTATTTTAACCTTCCGGAGGTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGCCTTATACCTGGTCGATGTGCAGCAA........................................................................................................................................................................................................TGTTCTCAAGTACAGCGACACAGATGGAAACATCAATATTCTTCCGTTGCTCAAAAGAATAATCGAAAACCATATTCCTGTTTGGATTTTCAG.................................................................................................CGGAGACCAAGATTCTGTTGTGCCATTGCTTGGATCCAGGACCCTTGTACGCGAGCTAGCTCATGACATGGGGTTCAAGATTACAGTCCCTTATGGAGCTTGGTTTCACAAAGGACAG..................................................................................................GTAGGAGGATGGCAAACGGAGTATGGCAATCTGTTGACCTTTGCCACTGTTAGAGGTGCTGCACATATGGTACCATATGCACAACCTGCAAGAGCTTTGCATCTGTTTAGTTCATTTATACGTGGCCGGAGGCTCCCAAACAACACACGTCCCTCCATCGACGACTAGGAAAAAG-C-CTCCAATGAGCACTTTAAAGTTGGTTATAGGTATAGTTACTTGAGTGAGGATGAATATTAGGGACTTCCTATATAAACAGGAAGAAACAAAACCATTGCATTGATAATTGGCTTTGAAGTAGCTGAAGAAGATTCCCTAGATTGACAGTGTGATAGAGATAGGGGAACATTTCTTTTATCTTAAATTAAATTTCTTTGAATGAAATAAAGAAAGCAAGTTTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E610830" ref_strand="+" ref_description="SGN-E610830 [58000]">
      <seq>gttcagaaagcccttcatgcaaataggacgaacttgccttatacctggtcgatgtgcagcaatattctgaagtacagtgacacagatggaaacatcaatattcttccattgcttaagagaataatcgaaaaccatatccctgtttggattttcagcggagaccaagattctgttgtgccattgcttggatccaggacccttgtacgcgagctagctcatgacatggggttcaagattacagtcccttatggagcttggtttcacaaaggacaggtgggaggctggcaaacagagtatggcaacttgttgacctttgccactgttagaggtgctgcacatatggtaccatatgcacaacctgcaagagccttgcatctgtttagttcatttatacgtggccggaggctcccaaacaacacacgtccctccatcgacgactaggagaaatcctccaatgagcactttaaagttggttataggtatagttacttgagtgagaatgaatattagggacttcctatataaacaggaagaagctaaatcattgcattgataattggctttgaagtagctgaagatttcctagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0132O11-x9j6G/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0132O11.1" temp_strand="+" temp_description="C04HBa0132O11.1  CU012067.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0132O11 sequenced_by:sanger upload_account_name:uk">
        <position start="115020" stop="116594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115320" g_stop="115381" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="115382" i_stop="115581" i_length="200">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="115582" g_stop="115674" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="155" r_length="93" r_score="0.914"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="115675" i_stop="115771" i_length="97">
            <donor d_prob="0.955" d_score="0.90"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115772" g_stop="115889" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="273" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="115890" i_stop="115987" i_length="98">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="115988" g_stop="116307" g_length="320"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="588" r_length="315" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0132O11.1" gen_strand="+" ref_id="SGN-E610830" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0132O11.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E610830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115320" e_stop="115381"/>
          <exon e_start="115582" e_stop="115674"/>
          <exon e_start="115772" e_stop="115889"/>
          <exon e_start="115988" e_stop="116307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGCCTTATACCTGGTCGATGTGCAGCAAGTAAGTCTGTAAATTATCAAGTCCACAATATTGAACCATAAACAGACACACAATAACAGATTACATCTTTGATATTAACTATTTCACTAGCAATTTAGAGCCTTCGACTTCTAAACCTACTATGTCAAAGCCCATAGATTTAATGAACCATTATAAGGTATTTGTAGATTATAACTAATGGATTATGACTTCTATTGCAGTGTTCTCAAGTACAGCGACACAGATGGAAACATCAATATTCTTCCGTTGCTCAAAAGAATAATCGAAAAACATATTCCTGTTTGGATTTTCAGGTAAAGATTCCAAAATGGACAAAAATCCACAATCTTGCTCCGTTTTTCCTAGTACCAAAGTCAACGGTGCTTGATTCTGAATTATACTCGCTTGCAGCGGAGACCAAGATTCTGTTGTGCCATTGCTTGGATCCAGGACCCTTGTACGCGAGCTAGCTCATGACATGGGGTTCAAGATTACAGTCCCTTATGGAGCTTGGTTTCACAAAGGACAGGTAACACACTCTCCTCTGATATCAAACATTTCCTTCCAAGTTCCACCAACGGTTGATGAGAAGCTGTAAGTATAACCATTTGTTTGTCTTTTAAACAGGTAGGAGGATGGCAAACGGAGTATGGCAATCTGTTGACCTTTGCCACTGTTAGAGGTGCTGCACATATGGTACCATATGCACAACCCGCAAGAGCTTTGCATCTGTTTAGTTCATTTATACGTGGCCGGAGGCTCCCAAACAACACACGTCCCTCCATCGACGACTAGGAAAAAGCCTCTCCAATGAGCACTTTAAAGTTGGTTATAGGTATAGTTACTTGAGTGAGGATGAATATTAGGGACTTCCTATATAAACAGGAAGAAACAAAACCATTGCATTGATAATTGGCTTTGAAGTAGCTGAAGAAGATTTCCTAGAT</genome_strand>
        <mrna_strand>GTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGCCTTATACCTGGTCGATGTGCAGCAA........................................................................................................................................................................................................TATTCTGAAGTACAGTGACACAGATGGAAACATCAATATTCTTCCATTGCTTAAGAGAATAATCGAAAACCATATCCCTGTTTGGATTTTCAG.................................................................................................CGGAGACCAAGATTCTGTTGTGCCATTGCTTGGATCCAGGACCCTTGTACGCGAGCTAGCTCATGACATGGGGTTCAAGATTACAGTCCCTTATGGAGCTTGGTTTCACAAAGGACAG..................................................................................................GTGGGAGGCTGGCAAACAGAGTATGGCAACTTGTTGACCTTTGCCACTGTTAGAGGTGCTGCACATATGGTACCATATGCACAACCTGCAAGAGCCTTGCATCTGTTTAGTTCATTTATACGTGGCCGGAGGCTCCCAAACAACACACGTCCCTCCATCGACGACTAGGAGAAA-TC-CTCCAATGAGCACTTTAAAGTTGGTTATAGGTATAGTTACTTGAGTGAGAATGAATATTAGGGACTTCCTATATAAACAGGAAGAAGCTAAATCATTGCATTGATAATTGGCTTTGAAGTAGCT---GAAGATTTCCTAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>77</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="14747" PGL_stop="12544"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14747" e_stop="14642"/>
            <exon e_start="14488" e_stop="14167"/>
            <exon e_start="13603" e_stop="13494"/>
            <exon e_start="13362" e_stop="12544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.987" e_score="0.991"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.997"/>
          <exon-intron don_prob="0.993" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="14747" e_stop="14642" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="14488" e_stop="14167" e_length="322"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13603" e_stop="13494" e_length="110"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.921">
            <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="0.988">
            <gDNA_exon_boundary e_start="13362" e_stop="12544" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14747" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237933" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14738" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="13235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14738" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="13323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259216" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14738" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="13330"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14738" stop="14642"/>
              <exon start="14488" stop="14196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14732" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="13280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14727" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="13122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429487" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14727" stop="14642"/>
              <exon start="14488" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="13186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E457370" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14462" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="12966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14462" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="12994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="12749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12844" stop="12544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAATCGATTGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT : ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG : AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG : CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGCAGAGTAATTAGGCAGTGTTATATGTTGAGAAGCAAAAATGCTGATGAATAAGTTGCATCAAGAAAATAATCTTAGAGGTAACTCAAGCCAGAAGGAGAGATCGAAGATCATTCCAACGTCTATTTAGTGGACAATATGGGAAGAAAGGAACAAAAGATGCTTTGAAGATAAATCAAGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTGTATTTTTGGTGTAAAGGAACATGTGTAGAAGATCTTGATTCAGTTTTTGATATTTTAAACTCCTTCTATATGATAGTGGAGCTGTAGGTTTGGTCTCTGTACAGTCCTGTAATTATGGATGATTGTACAGTCTTTGTATAATCTTATTATTTATATAAGATATGTTAGCTGTTTTAAAGTAAATAAATTATGAGTACCATATTCT</gDNA_template>
            <first_frame> G  I  D  C  S  D  E  F  N  D  A  V  F  F  A  R  T  S  D  *  Q  T  F  L  Q  G  Y  G  A  W  F  S  L  *  T   : Y  N  S  T  S  F  F  S  E  A  K  R  G  *  F  R  K  G  D  N  N  K  G  Q  R  Y  M  E  C  *  N  *  S  I  R  E  G  H  Y  L  V  *  *  G  L  G  G  I  C  A  K  S  *  P  K  S  W  R  F  C  C  V  *  A  L  G  *  Y  A  F  Q  C  Y  T  S  *  F  N  W  L  *  *  E  V  V  G  E  E  *  S  S  T  F  P  G  E  K  E  K  G  E  I  C  S  A  R  N  R :   E  K  E  S  *  G  R  S  T  S  L  P  M  H  E  R  K  F  *  V  H  G  K  N  K  R  I  *  R  E  K  T  F  S  L  Y   : A  Y  T  H  R  V  L  S  V  K  C  T  L  S  E  Y  N  H  D  V  N  R  P  V  G  *  I  M  S  C  E  S  E  N  L  Q  W  W  E  D  S  I  C  L  Y  Y  Q  R  L  A  *  F  L  F  K  Q  Q  A  K  S  R  R  C  L  P  L  P  T  *  S  L  K  K  R  L  K  F  H  C  H  R  C  S  C  F  V  G  C  R  L  F  F  Y  L  Y  S  F  D  F  Y  *  L  V  L  P  C  K  L  I  S  L  G  I  G  S  F  *  I  D  L  I  G  *  S  T  T  S  S  T  L  A  A  A  E  *  L  G  S  V  I  C  *  E  A  K  M  L  M  N  K  L  H  Q  E  N  N  L  R  G  N  S  S  Q  K  E  R  S  K  I  I  P  T  S  I  *  W  T  I  W  E  E  R  N  K  R  C  F  E  D  K  S  S  H  I  Q  K  M  K  L  K  C  L  V  L  L  Y  F  W  C  K  G  T  C  V  E  D  L  D  S  V  F  D  I  L  N  S  F  Y  M  I  V  E  L  *  V  W  S  L  Y  S  P  V  I  M  D  D  C  T  V  F  V  *  S  Y  Y  L  Y  K  I  C  *  L  F  *  S  K  *  I  M  S  T  I  F  </first_frame>
            <second_frame>  E  S  I  A  P  T  N  L  T  M  Q  S  S  S  P  E  L  P  I  S  R  R  F  F  K  V  M  V  P  G  F  H  S  K  L  :  T  I  P  P  A  F  F  P  K  L  K  G  D  N  L  E  K  G  T  I  I  K  G  K  D  I  W  N  V  E  I  N  R  S  E  K  G  I  I  S  F  D  K  G  W  E  E  F  V  Q  N  H  D  L  R  V  G  D  F  A  V  F  E  H  L  G  D  M  R  F  S  V  T  L  L  D  S  T  G  C  D  K  K  L  L  E  K  S  E  V  V  P  S  Q  E  K  K  K  K  V  K  S  A  Q  P  G  I   : E  K  R  K  V  E  G  D  Q  P  H  Y  Q  C  M  K  G  S  S  E  F  T  A  R  I  K  E  Y  N  V  R  K  R  S  P  Y  M  :  H  I  P  T  E  F  C  Q  S  N  A  L  F  Q  N  T  T  M  T  L  T  G  P  S  G  K  S  C  P  V  S  L  R  I  C  N  G  G  K  T  L  Y  A  C  I  T  R  G  W  H  D  F  F  S  S  N  K  L  K  V  G  D  V  C  L  F  Q  L  D  R  S  K  S  D  S  N  S  I  A  I  D  V  R  V  L  *  A  A  D  F  S  F  I  F  I  L  L  I  F  T  S  *  C  Y  L  V  N  L  F  H  *  V  *  V  L  F  K  L  T  *  L  A  D  Q  Q  Q  V  V  L  *  L  L  Q  S  N  *  A  V  L  Y  V  E  K  Q  K  C  *  *  I  S  C  I  K  K  I  I  L  E  V  T  Q  A  R  R  R  D  R  R  S  F  Q  R  L  F  S  G  Q  Y  G  K  K  G  T  K  D  A  L  K  I  N  Q  V  I  S  R  R  *  S  *  S  V  W  Y  F  C  I  F  G  V  K  E  H  V  *  K  I  L  I  Q  F  L  I  F  *  T  P  S  I  *  *  W  S  C  R  F  G  L  C  T  V  L  *  L  W  M  I  V  Q  S  L  Y  N  L  I  I  Y  I  R  Y  V  S  C  F  K  V  N  K  L  *  V  P  Y  S </second_frame>
            <third_frame>   N  R  L  L  R  R  I  *  R  C  S  L  L  R  Q  N  F  R  L  A  D  V  S  S  R  L  W  C  L  V  F  T  L  N  L :   Q  F  H  Q  L  F  F  R  S  *  K  G  I  I  *  K  R  G  Q  *  *  R  A  K  I  Y  G  M  L  K  L  I  D  P  R  R  A  L  S  R  L  I  R  V  G  R  N  L  C  K  I  M  T  *  E  L  E  I  L  L  C  L  S  T  W  V  I  C  V  S  V  L  H  F  L  I  Q  L  A  V  I  R  S  C  W  R  R  V  K  *  Y  L  P  R  R  K  R  K  R  *  N  L  L  S  P  E  *  :  R  K  G  K  L  R  E  I  N  L  T  T  N  A  *  K  E  V  L  S  S  R  Q  E  *  K  N  I  T  *  E  N  V  L  L  I  C :   I  Y  P  Q  S  F  V  S  Q  M  H  S  F  R  I  Q  P  *  R  *  Q  A  R  R  V  N  H  V  L  *  V  *  E  F  A  M  V  G  R  L  Y  M  L  V  L  P  E  A  G  M  I  S  F  Q  A  T  S  *  K  *  A  M  F  A  S  S  N  L  I  A  Q  K  A  T  Q  I  P  L  P  S  M  F  V  F  C  R  L  Q  T  F  L  L  S  L  F  F  *  F  L  L  V  S  V  T  L  *  T  Y  F  I  R  Y  R  F  F  L  N  *  L  D  W  L  I  N  N  K  *  Y  S  S  C  C  R  V  I  R  Q  C  Y  M  L  R  S  K  N  A  D  E  *  V  A  S  R  K  *  S  *  R  *  L  K  P  E  G  E  I  E  D  H  S  N  V  Y  L  V  D  N  M  G  R  K  E  Q  K  M  L  *  R  *  I  K  S  Y  P  E  D  E  V  E  V  F  G  T  F  V  F  L  V  *  R  N  M  C  R  R  S  *  F  S  F  *  Y  F  K  L  L  L  Y  D  S  G  A  V  G  L  V  S  V  Q  S  C  N  Y  G  *  L  Y  S  L  C  I  I  L  L  F  I  *  D  M  L  A  V  L  K  *  I  N  Y  E  Y  H  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14746" stop="14642"/>
                    <exon start="14488" stop="14167"/>
                    <exon start="13603" stop="13494"/>
                    <exon start="13362" stop="13105"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESIAPTNLTMQSSSPELPISRRFFKVMVPGFHSKLTIPPAFFPKLKGDNLEKGTIIKGKDIWNVEINRSEKGIISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRFSVTLLDSTGCDKKLLEKSEVVPSQEKKKKVKSAQPGIEKRKVEGDQPHYQCMKGSSEFTARIKEYNVRKRSPYMHIPTEFCQSNALFQNTTMTLTGPSGKSCPVSLRICNGGKTLYACITRGWHDFFSSNKLKVGDVCLFQLDRSKSDSNSIAIDVRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14745" e_stop="14167"/>
            <exon e_start="13603" e_stop="13494"/>
            <exon e_start="13362" e_stop="12544"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.993"/>
          <exon-intron don_prob="0.993" acc_prob="0.921" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="14745" e_stop="14167" e_length="579"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="14166" i_stop="13604" i_length="563"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13603" e_stop="13494" e_length="110"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.921">
            <gDNA_intron_boundary i_start="13493" i_stop="13363" i_length="131"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="13362" e_stop="12544" e_length="819"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14745" stop="14200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14462" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="12966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14462" stop="14167"/>
              <exon start="13603" stop="13494"/>
              <exon start="13362" stop="12994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317333" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13347" stop="12749"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12844" stop="12544"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCGATTGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTTGTAAGATACTACTGCCATTTCTTTCTATTTCTTCATAATTTTTTTTTTTTTGGGTGGTATCAGTTTTCTATATGAACGGAAGAGAAACTTCCAGAATTTCTGGTGTTTTTGATAGTATATTCCAATTTTTGTTCAATTCACCTGGTATTGCAGACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAG : AGAAAAGGAAAGTTGAGGGAGATCAACCTCACTACCAATGCATGAAAGGAAGTTCTGAGTTCACGGCAAGAATAAAAGAATATAACGTGAGAAAACGTTCTCCTTATATG : CATATACCCACAGAGTTTTGTCAGTCAAATGCACTCTTTCAGAATACAACCATGACGTTAACAGGCCCGTCGGGTAAATCATGTCCTGTGAGTCTGAGAATTTGCAATGGTGGGAAGACTCTATATGCTTGTATTACCAGAGGCTGGCATGATTTCTTTTCAAGCAACAAGCTAAAAGTAGGCGATGTTTGCCTCTTCCAACTTGATCGCTCAAAAAGCGACTCAAATTCCATTGCCATCGATGTTCGTGTTTTGTAGGCTGCAGACTTTTCTTTTATCTTTATTCTTTTGATTTTTACTAGTTAGTGTTACCTTGTAAACTTATTTCATTAGGTATAGGTTCTTTTTAAATTGACTTGATTGGCTGATCAACAACAAGTAGTACTCTAGCTGCTGCAGAGTAATTAGGCAGTGTTATATGTTGAGAAGCAAAAATGCTGATGAATAAGTTGCATCAAGAAAATAATCTTAGAGGTAACTCAAGCCAGAAGGAGAGATCGAAGATCATTCCAACGTCTATTTAGTGGACAATATGGGAAGAAAGGAACAAAAGATGCTTTGAAGATAAATCAAGTCATATCCAGAAGATGAAGTTGAAGTGTTTGGTACTTTTGTATTTTTGGTGTAAAGGAACATGTGTAGAAGATCTTGATTCAGTTTTTGATATTTTAAACTCCTTCTATATGATAGTGGAGCTGTAGGTTTGGTCTCTGTACAGTCCTGTAATTATGGATGATTGTACAGTCTTTGTATAATCTTATTATTTATATAAGATATGTTAGCTGTTTTAAAGTAAATAAATTATGAGTACCATATTCT</gDNA_template>
            <first_frame> N  R  L  L  R  R  I  *  R  C  S  L  L  R  Q  N  F  R  L  A  D  V  S  S  R  L  W  C  L  V  F  T  L  N  L  *  D  T  T  A  I  S  F  Y  F  F  I  I  F  F  F  L  G  G  I  S  F  L  Y  E  R  K  R  N  F  Q  N  F  W  C  F  *  *  Y  I  P  I  F  V  Q  F  T  W  Y  C  R  Q  F  H  Q  L  F  F  R  S  *  K  G  I  I  *  K  R  G  Q  *  *  R  A  K  I  Y  G  M  L  K  L  I  D  P  R  R  A  L  S  R  L  I  R  V  G  R  N  L  C  K  I  M  T  *  E  L  E  I  L  L  C  L  S  T  W  V  I  C  V  S  V  L  H  F  L  I  Q  L  A  V  I  R  S  C  W  R  R  V  K  *  Y  L  P  R  R  K  R  K  R  *  N  L  L  S  P  E  *  :  R  K  G  K  L  R  E  I  N  L  T  T  N  A  *  K  E  V  L  S  S  R  Q  E  *  K  N  I  T  *  E  N  V  L  L  I  C :   I  Y  P  Q  S  F  V  S  Q  M  H  S  F  R  I  Q  P  *  R  *  Q  A  R  R  V  N  H  V  L  *  V  *  E  F  A  M  V  G  R  L  Y  M  L  V  L  P  E  A  G  M  I  S  F  Q  A  T  S  *  K  *  A  M  F  A  S  S  N  L  I  A  Q  K  A  T  Q  I  P  L  P  S  M  F  V  F  C  R  L  Q  T  F  L  L  S  L  F  F  *  F  L  L  V  S  V  T  L  *  T  Y  F  I  R  Y  R  F  F  L  N  *  L  D  W  L  I  N  N  K  *  Y  S  S  C  C  R  V  I  R  Q  C  Y  M  L  R  S  K  N  A  D  E  *  V  A  S  R  K  *  S  *  R  *  L  K  P  E  G  E  I  E  D  H  S  N  V  Y  L  V  D  N  M  G  R  K  E  Q  K  M  L  *  R  *  I  K  S  Y  P  E  D  E  V  E  V  F  G  T  F  V  F  L  V  *  R  N  M  C  R  R  S  *  F  S  F  *  Y  F  K  L  L  L  Y  D  S  G  A  V  G  L  V  S  V  Q  S  C  N  Y  G  *  L  Y  S  L  C  I  I  L  L  F  I  *  D  M  L  A  V  L  K  *  I  N  Y  E  Y  H  I   </first_frame>
            <second_frame>  I  D  C  S  D  E  F  N  D  A  V  F  F  A  R  T  S  D  *  Q  T  F  L  Q  G  Y  G  A  W  F  S  L  *  T  C  K  I  L  L  P  F  L  S  I  S  S  *  F  F  F  F  W  V  V  S  V  F  Y  M  N  G  R  E  T  S  R  I  S  G  V  F  D  S  I  F  Q  F  L  F  N  S  P  G  I  A  D  N  S  T  S  F  F  S  E  A  K  R  G  *  F  R  K  G  D  N  N  K  G  Q  R  Y  M  E  C  *  N  *  S  I  R  E  G  H  Y  L  V  *  *  G  L  G  G  I  C  A  K  S  *  P  K  S  W  R  F  C  C  V  *  A  L  G  *  Y  A  F  Q  C  Y  T  S  *  F  N  W  L  *  *  E  V  V  G  E  E  *  S  S  T  F  P  G  E  K  E  K  G  E  I  C  S  A  R  N  R :   E  K  E  S  *  G  R  S  T  S  L  P  M  H  E  R  K  F  *  V  H  G  K  N  K  R  I  *  R  E  K  T  F  S  L  Y   : A  Y  T  H  R  V  L  S  V  K  C  T  L  S  E  Y  N  H  D  V  N  R  P  V  G  *  I  M  S  C  E  S  E  N  L  Q  W  W  E  D  S  I  C  L  Y  Y  Q  R  L  A  *  F  L  F  K  Q  Q  A  K  S  R  R  C  L  P  L  P  T  *  S  L  K  K  R  L  K  F  H  C  H  R  C  S  C  F  V  G  C  R  L  F  F  Y  L  Y  S  F  D  F  Y  *  L  V  L  P  C  K  L  I  S  L  G  I  G  S  F  *  I  D  L  I  G  *  S  T  T  S  S  T  L  A  A  A  E  *  L  G  S  V  I  C  *  E  A  K  M  L  M  N  K  L  H  Q  E  N  N  L  R  G  N  S  S  Q  K  E  R  S  K  I  I  P  T  S  I  *  W  T  I  W  E  E  R  N  K  R  C  F  E  D  K  S  S  H  I  Q  K  M  K  L  K  C  L  V  L  L  Y  F  W  C  K  G  T  C  V  E  D  L  D  S  V  F  D  I  L  N  S  F  Y  M  I  V  E  L  *  V  W  S  L  Y  S  P  V  I  M  D  D  C  T  V  F  V  *  S  Y  Y  L  Y  K  I  C  *  L  F  *  S  K  *  I  M  S  T  I  F  </second_frame>
            <third_frame>   S  I  A  P  T  N  L  T  M  Q  S  S  S  P  E  L  P  I  S  R  R  F  F  K  V  M  V  P  G  F  H  S  K  L  V  R  Y  Y  C  H  F  F  L  F  L  H  N  F  F  F  F  G  W  Y  Q  F  S  I  *  T  E  E  K  L  P  E  F  L  V  F  L  I  V  Y  S  N  F  C  S  I  H  L  V  L  Q  T  I  P  P  A  F  F  P  K  L  K  G  D  N  L  E  K  G  T  I  I  K  G  K  D  I  W  N  V  E  I  N  R  S  E  K  G  I  I  S  F  D  K  G  W  E  E  F  V  Q  N  H  D  L  R  V  G  D  F  A  V  F  E  H  L  G  D  M  R  F  S  V  T  L  L  D  S  T  G  C  D  K  K  L  L  E  K  S  E  V  V  P  S  Q  E  K  K  K  K  V  K  S  A  Q  P  G  I   : E  K  R  K  V  E  G  D  Q  P  H  Y  Q  C  M  K  G  S  S  E  F  T  A  R  I  K  E  Y  N  V  R  K  R  S  P  Y  M  :  H  I  P  T  E  F  C  Q  S  N  A  L  F  Q  N  T  T  M  T  L  T  G  P  S  G  K  S  C  P  V  S  L  R  I  C  N  G  G  K  T  L  Y  A  C  I  T  R  G  W  H  D  F  F  S  S  N  K  L  K  V  G  D  V  C  L  F  Q  L  D  R  S  K  S  D  S  N  S  I  A  I  D  V  R  V  L  *  A  A  D  F  S  F  I  F  I  L  L  I  F  T  S  *  C  Y  L  V  N  L  F  H  *  V  *  V  L  F  K  L  T  *  L  A  D  Q  Q  Q  V  V  L  *  L  L  Q  S  N  *  A  V  L  Y  V  E  K  Q  K  C  *  *  I  S  C  I  K  K  I  I  L  E  V  T  Q  A  R  R  R  D  R  R  S  F  Q  R  L  F  S  G  Q  Y  G  K  K  G  T  K  D  A  L  K  I  N  Q  V  I  S  R  R  *  S  *  S  V  W  Y  F  C  I  F  G  V  K  E  H  V  *  K  I  L  I  Q  F  L  I  F  *  T  P  S  I  *  *  W  S  C  R  F  G  L  C  T  V  L  *  L  W  M  I  V  Q  S  L  Y  N  L  I  I  Y  I  R  Y  V  S  C  F  K  V  N  K  L  *  V  P  Y  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14566" stop="14167"/>
                    <exon start="13603" stop="13494"/>
                    <exon start="13362" stop="13105"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>765</number_coding_nucleotides>
                  <number_encoded_amino_acids>255</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEEKLPEFLVFLIVYSNFCSIHLVLQTIPPAFFPKLKGDNLEKGTIIKGKDIWNVEINRSEKGIISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRFSVTLLDSTGCDKKLLEKSEVVPSQEKKKKVKSAQPGIEKRKVEGDQPHYQCMKGSSEFTARIKEYNVRKRSPYMHIPTEFCQSNALFQNTTMTLTGPSGKSCPVSLRICNGGKTLYACITRGWHDFFSSNKLKVGDVCLFQLDRSKSDSNSIAIDVRVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14738" e_stop="14642"/>
            <exon e_start="14488" e_stop="14137"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.987" e_score="0.990"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="14738" e_stop="14642" e_length="97"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.987">
            <gDNA_intron_boundary i_start="14641" i_stop="14489" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="0.963">
            <gDNA_exon_boundary e_start="14488" e_stop="14137" e_length="352"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14738" stop="14642"/>
              <exon start="14488" stop="14196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14736" stop="14642"/>
              <exon start="14488" stop="14137"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362436" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTCCGACGAATTTAACGATGCAGTCTTCTTCGCCAGAACTTCCGATTAGCAGACGTTTCTTCAAGGTTATGGTGCCTGGTTTTCACTCTAAACTT : ACAATTCCACCAGCTTTTTTTCCGAAGCTAAAAGGGGATAATTTAGAAAAGGGGACAATAATAAAGGGCAAAGATATATGGAATGTTGAAATTAATCGATCCGAGAAGGGCATTATCTCGTTTGATAAGGGTTGGGAGGAATTTGTGCAAAATCATGACCTAAGAGTTGGAGATTTTGCTGTGTTTGAGCACTTGGGTGATATGCGTTTCAGTGTTACACTTCTTGATTCAACTGGCTGTGATAAGAAGTTGTTGGAGAAGAGTGAAGTAGTACCTTCCCAGGAGAAAAAGAAAAAGGTGAAATCTGCTCAGCCCGGAATAGGTAATTTCCCTAAAGTTGTTATTTTTCCTC</gDNA_template>
            <first_frame> C  S  D  E  F  N  D  A  V  F  F  A  R  T  S  D  *  Q  T  F  L  Q  G  Y  G  A  W  F  S  L  *  T   : Y  N  S  T  S  F  F  S  E  A  K  R  G  *  F  R  K  G  D  N  N  K  G  Q  R  Y  M  E  C  *  N  *  S  I  R  E  G  H  Y  L  V  *  *  G  L  G  G  I  C  A  K  S  *  P  K  S  W  R  F  C  C  V  *  A  L  G  *  Y  A  F  Q  C  Y  T  S  *  F  N  W  L  *  *  E  V  V  G  E  E  *  S  S  T  F  P  G  E  K  E  K  G  E  I  C  S  A  R  N  R  *  F  P  *  S  C  Y  F  S   </first_frame>
            <second_frame>  A  P  T  N  L  T  M  Q  S  S  S  P  E  L  P  I  S  R  R  F  F  K  V  M  V  P  G  F  H  S  K  L  :  T  I  P  P  A  F  F  P  K  L  K  G  D  N  L  E  K  G  T  I  I  K  G  K  D  I  W  N  V  E  I  N  R  S  E  K  G  I  I  S  F  D  K  G  W  E  E  F  V  Q  N  H  D  L  R  V  G  D  F  A  V  F  E  H  L  G  D  M  R  F  S  V  T  L  L  D  S  T  G  C  D  K  K  L  L  E  K  S  E  V  V  P  S  Q  E  K  K  K  K  V  K  S  A  Q  P  G  I  G  N  F  P  K  V  V  I  F  P  </second_frame>
            <third_frame>   L  R  R  I  *  R  C  S  L  L  R  Q  N  F  R  L  A  D  V  S  S  R  L  W  C  L  V  F  T  L  N  L :   Q  F  H  Q  L  F  F  R  S  *  K  G  I  I  *  K  R  G  Q  *  *  R  A  K  I  Y  G  M  L  K  L  I  D  P  R  R  A  L  S  R  L  I  R  V  G  R  N  L  C  K  I  M  T  *  E  L  E  I  L  L  C  L  S  T  W  V  I  C  V  S  V  L  H  F  L  I  Q  L  A  V  I  R  S  C  W  R  R  V  K  *  Y  L  P  R  R  K  R  K  R  *  N  L  L  S  P  E  *  V  I  S  L  K  L  L  F  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14737" stop="14642"/>
                    <exon start="14488" stop="14138"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APTNLTMQSSSPELPISRRFFKVMVPGFHSKLTIPPAFFPKLKGDNLEKGTIIKGKDIWNVEINRSEKGIISFDKGWEEFVQNHDLRVGDFAVFEHLGDMRFSVTLLDSTGCDKKLLEKSEVVPSQEKKKKVKSAQPGIGNFPKVVIFP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="32098" PGL_stop="16231"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32098" e_stop="31894"/>
            <exon e_start="26577" e_stop="26497"/>
            <exon e_start="24484" e_stop="24306"/>
            <exon e_start="22114" e_stop="21959"/>
            <exon e_start="21376" e_stop="21269"/>
            <exon e_start="20393" e_stop="20272"/>
            <exon e_start="17205" e_stop="17074"/>
            <exon e_start="16859" e_stop="16749"/>
            <exon e_start="16659" e_stop="16231"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.389" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.641" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.542" e_score="1.000"/>
          <exon-only e_score="0.890"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="32098" e_stop="31894" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.389">
            <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26577" e_stop="26497" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26496" i_stop="24485" i_length="2012"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24484" e_stop="24306" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22114" e_stop="21959" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.641" acc_prob="0.978">
            <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21376" e_stop="21269" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20393" e_stop="20272" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17205" e_stop="17074" e_length="132"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="16859" e_stop="16749" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.542">
            <gDNA_intron_boundary i_start="16748" i_stop="16660" i_length="89"/>
          </intron>
          <exon e_serial="9" e_score="0.890">
            <gDNA_exon_boundary e_start="16659" e_stop="16231" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32098" stop="31894"/>
              <exon start="26577" stop="26497"/>
              <exon start="24484" stop="24410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24473" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20272"/>
              <exon start="17205" stop="17151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24328" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16749"/>
              <exon start="16659" stop="16558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20377" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16749"/>
              <exon start="16659" stop="16298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20374" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20301" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16749"/>
              <exon start="16659" stop="16231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416740" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCCAAAGATTAGCTGAGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACG : GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATT : AGGACATGGCTAAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACACTGGTTACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG : GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG : CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG : GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG : GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG : ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG : TCTAAATGGGGATACTTGGATTCTGCAGAAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTCCGCGTTCTGCCCAAGTGAGACGGTTTTGAGACCACCTCATCTGTGTGCCACTTTTCATGTCTAGATTTGTTGTGTACATGTAGTGTTCTCATATTCCTAAGATACTTCTCTTGACTTGTAGTCTTGTAGCATATCTGTTCTCATGTCCCGACTGTTATTTGGAATCACATAAAGCTTACATATGGTACAGTACATCTTACAGTAGTTTCTGTGAAGGTAGTTATTTAATGTTATGTTTATTTGTCCCCTTTGATTTTTTTTAAGTAGCCAATTGAACATGCTATTTCATCTTGTGATTTGAAATCAAGAGACACTCA</gDNA_template>
            <first_frame> P  P  K  I  S  *  D  L  K  Q  F  F  P  L  N  S  P  D  Q  F  L  C  I  F  L  D  L  Y  C  *  N  H  T  R  N  L  K  K  N  G  T  C  S  S  G  E  G  L  Y  Q  S  H  I  A  R  H  F  W  D  E  S  P  H  S  *  F  F  Y   : G  *  F  C  *  C  C  V  L  S  V  R  A  S  E  E  G  G  V  P  G  G  A  G  R  F  Y   : *  D  M  A  K  F  V  D  N  Y  P  E  Y  R  K  M  Q  G  N  V  S  K  H  V  T  L  V  T  E  M  S  K  I  V  E  E  R  K  L  M  L  V  S  Q  T  E  Q  E  L  A  C  N  G  G  Q  G  A  A  F  E  :  A  V  T  N  L  L  N  N  D  N  I  S  D  V  D  R  L  R  L  V  M  L  Y  A  L  R  Y  E  K  E  S  P  V  Q  L  M  Q  L  F  N  K  L  A  S  R  S  P  K  Y  K  P  G  :  L  V  Q  F  L  L  K  Q  A  G  V  D  K  R  T  G  D  L  Y  G  N  R  D  L  L  N  I  A  R  N  M  A  R  G  L  K  :  G  V  E  N  V  Y  T  Q  H  Q  P  L  L  F  Q  T  M  E  N  I  T  R  G  R  L  R  D  V  D  Y  P  Y  V  G  N  H  F  Q  Q  A  R :   P  Q  E  V  V  I  F  V  V  G  G  T  T  Y  E  E  S  R  S  V  A  L  Q  N  S  T  N  S  G  I  R  F  I  L  G  G  S  S  L  L  N  S  K  R :   F  L  K  D  L  E  E  A  Q  R  I  A  R  I  S  T  N  M  L  *  I  L  D  S  T  V  P  C  E  N  L  K  I  *  N  H  S :   L  N  G  D  T  W  I  L  Q  K  Y  I  T  S  *  V  C  *  *  K  F  P  *  I  H  C  V  A  T  V  I  I  V  F  H  S  F  R  V  L  P  K  *  D  G  F  E  T  T  S  S  V  C  H  F  S  C  L  D  L  L  C  T  C  S  V  L  I  F  L  R  Y  F  S  *  L  V  V  L  *  H  I  C  S  H  V  P  T  V  I  W  N  H  I  K  L  T  Y  G  T  V  H  L  T  V  V  S  V  K  V  V  I  *  C  Y  V  Y  L  S  P  L  I  F  F  K  *  P  I  E  H  A  I  S  S  C  D  L  K  S  R  D  T   </first_frame>
            <second_frame>  L  Q  R  L  A  E  I  *  N  N  F  F  H  *  I  H  Q  I  N  F  S  A  Y  F  W  I  C  I  A  E  I  I  Q  G  I  *  K  K  M  V  L  V  A  A  V  R  D  Y  I  N  R  I  L  Q  D  I  S  G  M  K  V  L  I  L  D  S  S  T  :  V  S  S  V  S  V  V  Y  S  Q  S  E  L  L  K  K  E  V  F  L  V  E  L  V  D  S  I  :  R  T  W  L  N  L  *  T  T  T  Q  N  T  E  K  C  K  G  M  F  L  S  T  *  H  W  L  R  K  *  A  K  *  L  K  S  E  N  *  C  W  F  H  R  R  N  K  S  W  L  A  M  V  D  K  G  Q  H  S  R :   L  *  Q  I  Y  *  I  M  I  I  S  L  M  L  T  A  C  A  L  S  C  C  T  P  C  A  M  R  R  R  V  L  F  N  *  C  S  Y  S  T  N  *  H  L  G  R  P  S  I  S  L  G :   *  C  N  S  F  *  S  K  Q  E  L  I  R  E  L  E  I  C  T  G  T  E  I  S  *  T  L  H  V  T  W  L  V  G  S  R :   G  L  R  M  C  I  P  S  I  N  H  F  Y  S  K  L  W  R  T  S  P  G  V  D  *  E  M  W  T  T  L  M  *  E  I  T  F  S  K  Q   : G  H  R  K  W  *  F  S  L  L  V  G  Q  H  M  K  S  H  V  R  L  L  Y  R  T  L  R  T  L  A  F  V  L  Y  L  V  V  L  P  F  *  I  L  K   : D  S  *  R  T  L  K  K  L  R  E  S  L  V  *  A  P  I  C  F  E  F  W  T  L  Q  Y  L  V  K  I  *  K  Y  R  I  T   : V  *  M  G  I  L  G  F  C  R  S  T  *  R  A  E  F  A  D  E  N  S  H  K  Y  I  V  *  P  L  *  S  S  S  F  I  A  S  A  F  C  P  S  E  T  V  L  R  P  P  H  L  C  A  T  F  H  V  *  I  C  C  V  H  V  V  F  S  Y  S  *  D  T  S  L  D  L  *  S  C  S  I  S  V  L  M  S  R  L  L  F  G  I  T  *  S  L  H  M  V  Q  Y  I  L  Q  *  F  L  *  R  *  L  F  N  V  M  F  I  C  P  L  *  F  F  L  S  S  Q  L  N  M  L  F  H  L  V  I  *  N  Q  E  T  L  </second_frame>
            <third_frame>   S  K  D  *  L  R  S  E  T  I  F  S  T  E  F  T  R  S  I  S  L  H  I  F  G  F  V  L  L  K  S  Y  K  E  F  K  K  K  W  Y  L  *  Q  R  *  G  T  I  S  I  A  Y  C  K  T  F  L  G  *  K  S  S  F  L  I  L  L  R :   L  V  L  L  V  L  C  T  L  S  Q  S  F  *  R  R  R  C  S  W  W  S  W  *  I  L  L :   G  H  G  *  I  C  R  Q  L  P  R  I  P  K  N  A  R  E  C  F  *  A  R  D  T  G  Y  G  N  E  Q  N  S  *  R  A  K  T  D  V  G  F  T  D  G  T  R  V  G  L  Q  W  W  T  R  G  S  I  R   : G  C  D  K  S  I  E  *  *  *  Y  L  *  C  *  P  P  A  P  C  H  A  V  R  L  A  L  *  E  G  E  S  C  S  T  N  A  A  I  Q  Q  I  S  I  S  V  A  Q  V  *  A  W   : A  S  A  I  P  S  K  A  S  R  S  *  *  E  N  W  R  S  V  R  E  Q  R  S  P  E  H  C  T  *  H  G  S  W  A  Q   : G  G  *  E  C  V  Y  P  A  S  T  T  S  I  P  N  Y  G  E  H  H  Q  G  S  T  E  R  C  G  L  P  L  C  R  K  S  L  S  A  S  K  :  A  T  G  S  G  D  F  R  C  W  W  D  N  I  *  R  V  T  F  G  C  S  T  E  L  Y  E  L  W  H  S  F  Y  T  W  W  F  F  P  S  K  F  *  K  :  I  L  E  G  P  *  R  S  S  E  N  R  S  Y  K  H  Q  Y  A  L  N  F  G  L  Y  S  T  L  *  K  S  E  N  I  E  S  Q  :  S  K  W  G  Y  L  D  S  A  E  V  H  N  E  L  S  L  L  M  K  I  P  I  N  T  L  C  S  H  C  N  H  R  L  S  *  L  P  R  S  A  Q  V  R  R  F  *  D  H  L  I  C  V  P  L  F  M  S  R  F  V  V  Y  M  *  C  S  H  I  P  K  I  L  L  L  T  C  S  L  V  A  Y  L  F  S  C  P  D  C  Y  L  E  S  H  K  A  Y  I  W  Y  S  T  S  Y  S  S  F  C  E  G  S  Y  L  M  L  C  L  F  V  P  F  D  F  F  *  V  A  N  *  T  C  Y  F  I  L  *  F  E  I  K  R  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24482" stop="24306"/>
                    <exon start="22114" stop="21959"/>
                    <exon start="21376" stop="21269"/>
                    <exon start="20393" stop="20272"/>
                    <exon start="17205" stop="17074"/>
                    <exon start="16859" stop="16799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMAKFVDNYPEYRKMQGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQGAAFEAVTNLLNNDNISDVDRLRLVMLYALRYEKESPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMENITRGRLRDVDYPYVGNHFQQARPQEVVIFVVGGTTYEESRSVALQNSTNSGIRFILGGSSLLNSKRFLKDLEEAQRIARISTNML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31989" stop="31894"/>
                    <exon start="26577" stop="26497"/>
                    <exon start="24484" stop="24464"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVLVAAVRDYINRILQDISGMKVLILDSSTVSSVSVVYSQSELLKKEVFLVELVDSIRTWLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="32098" e_stop="31894"/>
            <exon e_start="26577" e_stop="26497"/>
            <exon e_start="24484" e_stop="24306"/>
            <exon e_start="22114" e_stop="21959"/>
            <exon e_start="21376" e_stop="21269"/>
            <exon e_start="20393" e_stop="20272"/>
            <exon e_start="17205" e_stop="17074"/>
            <exon e_start="16859" e_stop="16749"/>
            <exon e_start="16631" e_stop="16548"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.389" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.641" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.947" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.958" e_score="0.982"/>
          <exon-only e_score="0.952"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="32098" e_stop="31894" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.389">
            <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26577" e_stop="26497" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26496" i_stop="24485" i_length="2012"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24484" e_stop="24306" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="0.972" acc_prob="0.997">
            <gDNA_intron_boundary i_start="24305" i_stop="22115" i_length="2191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22114" e_stop="21959" e_length="156"/>
          </exon>
          <intron i_serial="4" don_prob="0.641" acc_prob="0.978">
            <gDNA_intron_boundary i_start="21958" i_stop="21377" i_length="582"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="21376" e_stop="21269" e_length="108"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.983">
            <gDNA_intron_boundary i_start="21268" i_stop="20394" i_length="875"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20393" e_stop="20272" e_length="122"/>
          </exon>
          <intron i_serial="6" don_prob="0.947" acc_prob="0.989">
            <gDNA_intron_boundary i_start="20271" i_stop="17206" i_length="3066"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="17205" e_stop="17074" e_length="132"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.978">
            <gDNA_intron_boundary i_start="17073" i_stop="16860" i_length="214"/>
          </intron>
          <exon e_serial="8" e_score="0.982">
            <gDNA_exon_boundary e_start="16859" e_stop="16749" e_length="111"/>
          </exon>
          <intron i_serial="8" don_prob="0.988" acc_prob="0.958">
            <gDNA_intron_boundary i_start="16748" i_stop="16632" i_length="117"/>
          </intron>
          <exon e_serial="9" e_score="0.952">
            <gDNA_exon_boundary e_start="16631" e_stop="16548" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32098" stop="31894"/>
              <exon start="26577" stop="26497"/>
              <exon start="24484" stop="24410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338756" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24473" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24405" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20272"/>
              <exon start="17205" stop="17151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24341" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16749"/>
              <exon start="16631" stop="16548"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24341" stop="24306"/>
              <exon start="22114" stop="21959"/>
              <exon start="21376" stop="21269"/>
              <exon start="20393" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16749"/>
              <exon start="16631" stop="16606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20374" stop="20272"/>
              <exon start="17205" stop="17074"/>
              <exon start="16859" stop="16842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242532" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTCCAAAGATTAGCTGAGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACG : GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATT : AGGACATGGCTAAATTTGTAGACAACTACCCAGAATACCGAAAAATGCAAGGGAATGTTTCTAAGCACGTGACACTGGTTACGGAAATGAGCAAAATAGTTGAAGAGCGAAAACTGATGTTGGTTTCACAGACGGAACAAGAGTTGGCTTGCAATGGTGGACAAGGGGCAGCATTCGAG : GCTGTGACAAATCTATTGAATAATGATAATATCTCTGATGTTGACCGCCTGCGCCTTGTCATGCTGTACGCCTTGCGCTATGAGAAGGAGAGTCCTGTTCAACTAATGCAGCTATTCAACAAATTAGCATCTCGGTCGCCCAAGTATAAGCCTGGG : CTAGTGCAATTCCTTCTAAAGCAAGCAGGAGTTGATAAGAGAACTGGAGATCTGTACGGGAACAGAGATCTCCTGAACATTGCACGTAACATGGCTCGTGGGCTCAAG : GGGGTTGAGAATGTGTATACCCAGCATCAACCACTTCTATTCCAAACTATGGAGAACATCACCAGGGGTCGACTGAGAGATGTGGACTACCCTTATGTAGGAAATCACTTTCAGCAAGCAAG : GCCACAGGAAGTGGTGATTTTCGTTGTTGGTGGGACAACATATGAAGAGTCACGTTCGGTTGCTCTACAGAACTCTACGAACTCTGGCATTCGTTTTATACTTGGTGGTTCTTCCCTTCTAAATTCTAAAAG : ATTCTTGAAGGACCTTGAAGAAGCTCAGAGAATCGCTCGTATAAGCACCAATATGCTTTGAATTTTGGACTCTACAGTACCTTGTGAAAATCTGAAAATATAGAATCACAG : AAGTACATAACGAGCTGAGTTTGCTGATGAAAATTCCCATAAATACATTGTGTAGCCACTGTAATCATCGTCTTTCATAGCTTC</gDNA_template>
            <first_frame> P  P  K  I  S  *  D  L  K  Q  F  F  P  L  N  S  P  D  Q  F  L  C  I  F  L  D  L  Y  C  *  N  H  T  R  N  L  K  K  N  G  T  C  S  S  G  E  G  L  Y  Q  S  H  I  A  R  H  F  W  D  E  S  P  H  S  *  F  F  Y   : G  *  F  C  *  C  C  V  L  S  V  R  A  S  E  E  G  G  V  P  G  G  A  G  R  F  Y   : *  D  M  A  K  F  V  D  N  Y  P  E  Y  R  K  M  Q  G  N  V  S  K  H  V  T  L  V  T  E  M  S  K  I  V  E  E  R  K  L  M  L  V  S  Q  T  E  Q  E  L  A  C  N  G  G  Q  G  A  A  F  E  :  A  V  T  N  L  L  N  N  D  N  I  S  D  V  D  R  L  R  L  V  M  L  Y  A  L  R  Y  E  K  E  S  P  V  Q  L  M  Q  L  F  N  K  L  A  S  R  S  P  K  Y  K  P  G  :  L  V  Q  F  L  L  K  Q  A  G  V  D  K  R  T  G  D  L  Y  G  N  R  D  L  L  N  I  A  R  N  M  A  R  G  L  K  :  G  V  E  N  V  Y  T  Q  H  Q  P  L  L  F  Q  T  M  E  N  I  T  R  G  R  L  R  D  V  D  Y  P  Y  V  G  N  H  F  Q  Q  A  R :   P  Q  E  V  V  I  F  V  V  G  G  T  T  Y  E  E  S  R  S  V  A  L  Q  N  S  T  N  S  G  I  R  F  I  L  G  G  S  S  L  L  N  S  K  R :   F  L  K  D  L  E  E  A  Q  R  I  A  R  I  S  T  N  M  L  *  I  L  D  S  T  V  P  C  E  N  L  K  I  *  N  H  R :   S  T  *  R  A  E  F  A  D  E  N  S  H  K  Y  I  V  *  P  L  *  S  S  S  F  I  A   </first_frame>
            <second_frame>  L  Q  R  L  A  E  I  *  N  N  F  F  H  *  I  H  Q  I  N  F  S  A  Y  F  W  I  C  I  A  E  I  I  Q  G  I  *  K  K  M  V  L  V  A  A  V  R  D  Y  I  N  R  I  L  Q  D  I  S  G  M  K  V  L  I  L  D  S  S  T  :  V  S  S  V  S  V  V  Y  S  Q  S  E  L  L  K  K  E  V  F  L  V  E  L  V  D  S  I  :  R  T  W  L  N  L  *  T  T  T  Q  N  T  E  K  C  K  G  M  F  L  S  T  *  H  W  L  R  K  *  A  K  *  L  K  S  E  N  *  C  W  F  H  R  R  N  K  S  W  L  A  M  V  D  K  G  Q  H  S  R :   L  *  Q  I  Y  *  I  M  I  I  S  L  M  L  T  A  C  A  L  S  C  C  T  P  C  A  M  R  R  R  V  L  F  N  *  C  S  Y  S  T  N  *  H  L  G  R  P  S  I  S  L  G :   *  C  N  S  F  *  S  K  Q  E  L  I  R  E  L  E  I  C  T  G  T  E  I  S  *  T  L  H  V  T  W  L  V  G  S  R :   G  L  R  M  C  I  P  S  I  N  H  F  Y  S  K  L  W  R  T  S  P  G  V  D  *  E  M  W  T  T  L  M  *  E  I  T  F  S  K  Q   : G  H  R  K  W  *  F  S  L  L  V  G  Q  H  M  K  S  H  V  R  L  L  Y  R  T  L  R  T  L  A  F  V  L  Y  L  V  V  L  P  F  *  I  L  K   : D  S  *  R  T  L  K  K  L  R  E  S  L  V  *  A  P  I  C  F  E  F  W  T  L  Q  Y  L  V  K  I  *  K  Y  R  I  T   : E  V  H  N  E  L  S  L  L  M  K  I  P  I  N  T  L  C  S  H  C  N  H  R  L  S  *  L  </second_frame>
            <third_frame>   S  K  D  *  L  R  S  E  T  I  F  S  T  E  F  T  R  S  I  S  L  H  I  F  G  F  V  L  L  K  S  Y  K  E  F  K  K  K  W  Y  L  *  Q  R  *  G  T  I  S  I  A  Y  C  K  T  F  L  G  *  K  S  S  F  L  I  L  L  R :   L  V  L  L  V  L  C  T  L  S  Q  S  F  *  R  R  R  C  S  W  W  S  W  *  I  L  L :   G  H  G  *  I  C  R  Q  L  P  R  I  P  K  N  A  R  E  C  F  *  A  R  D  T  G  Y  G  N  E  Q  N  S  *  R  A  K  T  D  V  G  F  T  D  G  T  R  V  G  L  Q  W  W  T  R  G  S  I  R   : G  C  D  K  S  I  E  *  *  *  Y  L  *  C  *  P  P  A  P  C  H  A  V  R  L  A  L  *  E  G  E  S  C  S  T  N  A  A  I  Q  Q  I  S  I  S  V  A  Q  V  *  A  W   : A  S  A  I  P  S  K  A  S  R  S  *  *  E  N  W  R  S  V  R  E  Q  R  S  P  E  H  C  T  *  H  G  S  W  A  Q   : G  G  *  E  C  V  Y  P  A  S  T  T  S  I  P  N  Y  G  E  H  H  Q  G  S  T  E  R  C  G  L  P  L  C  R  K  S  L  S  A  S  K  :  A  T  G  S  G  D  F  R  C  W  W  D  N  I  *  R  V  T  F  G  C  S  T  E  L  Y  E  L  W  H  S  F  Y  T  W  W  F  F  P  S  K  F  *  K  :  I  L  E  G  P  *  R  S  S  E  N  R  S  Y  K  H  Q  Y  A  L  N  F  G  L  Y  S  T  L  *  K  S  E  N  I  E  S  Q  :  K  Y  I  T  S  *  V  C  *  *  K  F  P  *  I  H  C  V  A  T  V  I  I  V  F  H  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24482" stop="24306"/>
                    <exon start="22114" stop="21959"/>
                    <exon start="21376" stop="21269"/>
                    <exon start="20393" stop="20272"/>
                    <exon start="17205" stop="17074"/>
                    <exon start="16859" stop="16799"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DMAKFVDNYPEYRKMQGNVSKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQGAAFEAVTNLLNNDNISDVDRLRLVMLYALRYEKESPVQLMQLFNKLASRSPKYKPGLVQFLLKQAGVDKRTGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMENITRGRLRDVDYPYVGNHFQQARPQEVVIFVVGGTTYEESRSVALQNSTNSGIRFILGGSSLLNSKRFLKDLEEAQRIARISTNML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31989" stop="31894"/>
                    <exon start="26577" stop="26497"/>
                    <exon start="24484" stop="24464"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVLVAAVRDYINRILQDISGMKVLILDSSTVSSVSVVYSQSELLKKEVFLVELVDSIRTWLNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="32081" e_stop="31894"/>
            <exon e_start="26577" e_stop="26376"/>
            <exon e_start="26229" e_stop="26150"/>
            <exon e_start="25568" e_stop="25341"/>
            <exon e_start="25159" e_stop="25138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.389" e_score="0.941"/>
          <exon-intron don_prob="0.900" acc_prob="0.781" e_score="0.990"/>
          <exon-intron don_prob="1.000" acc_prob="0.992" e_score="0.988"/>
          <exon-intron don_prob="0.824" acc_prob="0.986" e_score="0.974"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="32081" e_stop="31894" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.389">
            <gDNA_intron_boundary i_start="31893" i_stop="26578" i_length="5316"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="26577" e_stop="26376" e_length="202"/>
          </exon>
          <intron i_serial="2" don_prob="0.900" acc_prob="0.781">
            <gDNA_intron_boundary i_start="26375" i_stop="26230" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="26229" e_stop="26150" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.992">
            <gDNA_intron_boundary i_start="26149" i_stop="25569" i_length="581"/>
          </intron>
          <exon e_serial="4" e_score="0.974">
            <gDNA_exon_boundary e_start="25568" e_stop="25341" e_length="228"/>
          </exon>
          <intron i_serial="4" don_prob="0.824" acc_prob="0.986">
            <gDNA_intron_boundary i_start="25340" i_stop="25160" i_length="181"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25159" e_stop="25138" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32081" stop="31894"/>
              <exon start="26577" stop="26376"/>
              <exon start="26229" stop="26190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463906" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32075" stop="31894"/>
              <exon start="26577" stop="26376"/>
              <exon start="26229" stop="26150"/>
              <exon start="25568" stop="25491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E416739" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32074" stop="31894"/>
              <exon start="26577" stop="26376"/>
              <exon start="26229" stop="26150"/>
              <exon start="25568" stop="25484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E439328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26577" stop="26376"/>
              <exon start="26229" stop="26150"/>
              <exon start="25568" stop="25341"/>
              <exon start="25159" stop="25138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415581" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26577" stop="26376"/>
              <exon start="26229" stop="26150"/>
              <exon start="25568" stop="25341"/>
              <exon start="25159" stop="25148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437261" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATCTGAAACAATTTTTTCCACTGAATTCACCAGATCAATTTCTCTGCATATTTTTGGATTTGTATTGCTGAAATCATACAAGGAATTTAAAAAAAAATGGTACTTGTAGCAGCGGTGAGGGACTATATCAATCGCATATTGCAAGACATTTCTGGGATGAAAGTCCTCATTCTTGATTCTTCTACG : GTTAGTTCTGTTAGTGTTGTGTACTCTCAGTCAGAGCTTCTGAAGAAGGAGGTGTTCCTGGTGGAGCTGGTAGATTCTATTGCCATGTCCAAAGAATCCATGTCACATCTTAAAGCAGTTTATTTTCTGAGGCCAACATCAGAGAATATCCAGCATATGCGTCGTCAACTAGCTAAGCCACGATTTGGAGAATATCACCTTT : TTTTCTCCAATATTTTGAAAGATACGCAACTTCATATGCTAGCCGATTCAGATGAGCATGAAGTTGTCCAGCAGTTGCAG : GAATTTTATGCAGATTTTGTTGCGTTGGACCCTTACCATTTCACGTTAAATATGGCCGCAAACCACATGTATATGCTCCCAGCAGTTGTAGATCCATCAGGATTGCAGCAGTTCTGTGATCGAATCGTTGATGGAATGTCTGCAGTTTTCTTGGCGTTAAAGCGAAGGCCTATTATTCGATATTCAAGGACATCTGATATTGCGAAAAGAATAGCACATGAAGCTTCT : AAGCTGATGTACCAGCAGGAGA</gDNA_template>
            <first_frame> R  S  E  T  I  F  S  T  E  F  T  R  S  I  S  L  H  I  F  G  F  V  L  L  K  S  Y  K  E  F  K  K  K  W  Y  L  *  Q  R  *  G  T  I  S  I  A  Y  C  K  T  F  L  G  *  K  S  S  F  L  I  L  L  R :   L  V  L  L  V  L  C  T  L  S  Q  S  F  *  R  R  R  C  S  W  W  S  W  *  I  L  L  P  C  P  K  N  P  C  H  I  L  K  Q  F  I  F  *  G  Q  H  Q  R  I  S  S  I  C  V  V  N  *  L  S  H  D  L  E  N  I  T  F  :  F  S  P  I  F  *  K  I  R  N  F  I  C  *  P  I  Q  M  S  M  K  L  S  S  S  C  R :   N  F  M  Q  I  L  L  R  W  T  L  T  I  S  R  *  I  W  P  Q  T  T  C  I  C  S  Q  Q  L  *  I  H  Q  D  C  S  S  S  V  I  E  S  L  M  E  C  L  Q  F  S  W  R  *  S  E  G  L  L  F  D  I  Q  G  H  L  I  L  R  K  E  *  H  M  K  L  L :   S  *  C  T  S  R  R </first_frame>
            <second_frame>  D  L  K  Q  F  F  P  L  N  S  P  D  Q  F  L  C  I  F  L  D  L  Y  C  *  N  H  T  R  N  L  K  K  N  G  T  C  S  S  G  E  G  L  Y  Q  S  H  I  A  R  H  F  W  D  E  S  P  H  S  *  F  F  Y   : G  *  F  C  *  C  C  V  L  S  V  R  A  S  E  E  G  G  V  P  G  G  A  G  R  F  Y  C  H  V  Q  R  I  H  V  T  S  *  S  S  L  F  S  E  A  N  I  R  E  Y  P  A  Y  A  S  S  T  S  *  A  T  I  W  R  I  S  P  F :   F  L  Q  Y  F  E  R  Y  A  T  S  Y  A  S  R  F  R  *  A  *  S  C  P  A  V  A   : G  I  L  C  R  F  C  C  V  G  P  L  P  F  H  V  K  Y  G  R  K  P  H  V  Y  A  P  S  S  C  R  S  I  R  I  A  A  V  L  *  S  N  R  *  W  N  V  C  S  F  L  G  V  K  A  K  A  Y  Y  S  I  F  K  D  I  *  Y  C  E  K  N  S  T  *  S  F   : *  A  D  V  P  A  G   </second_frame>
            <third_frame>   I  *  N  N  F  F  H  *  I  H  Q  I  N  F  S  A  Y  F  W  I  C  I  A  E  I  I  Q  G  I  *  K  K  M  V  L  V  A  A  V  R  D  Y  I  N  R  I  L  Q  D  I  S  G  M  K  V  L  I  L  D  S  S  T  :  V  S  S  V  S  V  V  Y  S  Q  S  E  L  L  K  K  E  V  F  L  V  E  L  V  D  S  I  A  M  S  K  E  S  M  S  H  L  K  A  V  Y  F  L  R  P  T  S  E  N  I  Q  H  M  R  R  Q  L  A  K  P  R  F  G  E  Y  H  L   : F  F  S  N  I  L  K  D  T  Q  L  H  M  L  A  D  S  D  E  H  E  V  V  Q  Q  L  Q  :  E  F  Y  A  D  F  V  A  L  D  P  Y  H  F  T  L  N  M  A  A  N  H  M  Y  M  L  P  A  V  V  D  P  S  G  L  Q  Q  F  C  D  R  I  V  D  G  M  S  A  V  F  L  A  L  K  R  R  P  I  I  R  Y  S  R  T  S  D  I  A  K  R  I  A  H  E  A  S  :  K  L  M  Y  Q  Q  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31989" stop="31894"/>
                    <exon start="26577" stop="26376"/>
                    <exon start="26229" stop="26150"/>
                    <exon start="25568" stop="25341"/>
                    <exon start="25159" stop="25139"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>627</number_coding_nucleotides>
                  <number_encoded_amino_acids>209</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKMVLVAAVRDYINRILQDISGMKVLILDSSTVSSVSVVYSQSELLKKEVFLVELVDSIAMSKESMSHLKAVYFLRPTSENIQHMRRQLAKPRFGEYHLFFSNILKDTQLHMLADSDEHEVVQQLQEFYADFVALDPYHFTLNMAANHMYMLPAVVDPSGLQQFCDRIVDGMSAVFLALKRRPIIRYSRTSDIAKRIAHEASKLMYQQE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="42072" PGL_stop="34180"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="42072" e_stop="41929"/>
            <exon e_start="41030" e_stop="40752"/>
            <exon e_start="39274" e_stop="39130"/>
            <exon e_start="35530" e_stop="35421"/>
            <exon e_start="35171" e_stop="34754"/>
            <exon e_start="34655" e_stop="34180"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.728" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.885" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="42072" e_stop="41929" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="41928" i_stop="41031" i_length="898"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41030" e_stop="40752" e_length="279"/>
          </exon>
          <intron i_serial="2" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="40751" i_stop="39275" i_length="1477"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39274" e_stop="39130" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39129" i_stop="35531" i_length="3599"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="35530" e_stop="35421" e_length="110"/>
          </exon>
          <intron i_serial="4" don_prob="0.728" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35420" i_stop="35172" i_length="249"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35171" e_stop="34754" e_length="418"/>
          </exon>
          <intron i_serial="5" don_prob="0.885" acc_prob="0.937">
            <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="34655" e_stop="34180" e_length="476"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42072" stop="41929"/>
              <exon start="41030" stop="40752"/>
              <exon start="39274" stop="39130"/>
              <exon start="35530" stop="35421"/>
              <exon start="35171" stop="35016"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42022" stop="41929"/>
              <exon start="41030" stop="40752"/>
              <exon start="39274" stop="39130"/>
              <exon start="35530" stop="35498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42022" stop="41929"/>
              <exon start="41030" stop="40752"/>
              <exon start="39274" stop="39228"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42018" stop="41929"/>
              <exon start="41030" stop="40752"/>
              <exon start="39274" stop="39139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337305" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41991" stop="41929"/>
              <exon start="41030" stop="40752"/>
              <exon start="39274" stop="39130"/>
              <exon start="35530" stop="35421"/>
              <exon start="35171" stop="34754"/>
              <exon start="34655" stop="34180"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41982" stop="41929"/>
              <exon start="41030" stop="40752"/>
              <exon start="39274" stop="39217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324948" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40913" stop="40752"/>
              <exon start="39274" stop="39146"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261889" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35530" stop="35421"/>
              <exon start="35171" stop="34754"/>
              <exon start="34655" stop="34465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E585832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35524" stop="35421"/>
              <exon start="35171" stop="34754"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35505" stop="35421"/>
              <exon start="35171" stop="34754"/>
              <exon start="34655" stop="34463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710824" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATTTCAATCCCAACTATTTATTCTTACCTTCTTCTCAGGGCCTTCCGATCTACTGTTTCACCTCTGTTTTTGAATTCCAATATTTCTTTCGCCAATCGATCTGCTTCAGAGCATTCAGCAATCGATCGGCTTTAATCCAG : GAAATGGCTGCTGAGCCTACAAAAGAACATATTGATGTTGCTGAGACTGAACCTGTGGCATCATCTACTGATAATGAAGAAAAGACAAAAAAGAAGAAAAAGAAGGGATTTTTTTCGATGATATGGAATAGTTTATTTAGGTCCAAAAAGGATGATTTTGAGAAGAGATTGCAGCATATTTCCAAGGAGGAGGCTGCTGTTATTGCCAGAATCAATAAGCGATCCCAAAATTGGAGAAGGATGACGAGGCATCTCATTGTACTTTCTGTGATTTTTGAG : GTTATTGCAGTGGGTTATGCTATCATGACAACACGATCCCTTGAGCTGAACTGGAAAATGAGGGCATTGCGAGTTTTACCAATGTTTCTGTTGCCTGGCTTATCCTTCATTACATATTCAGCGATTGGAAGTTTTACAAGGATGT : GTGAACGTAAGGACCAGAAAACTCTAGAAAAACTACGAGCTGAAAGGCAAGCCAAGATTGAGGAACTGAAAGAGAAGACAAATTACTATATAACGCAACAGCTCATTCAG : AGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG : GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATTCGGTCAAACAAGTTAGTGGATCTACTCCGGATAAAATACCCGCATCAGCAAGTGGCAGTCCTGTAGCAGCTCCAGTGGAAACAGAAGGTGATAACATAGTGTCCAGTGCTTCTAACAGCTAGTAGATGGGGAGTTTTGAATAGAGTCGTGCAGGCGAGTGCTTTTTCTCCCTATATATGTGTAGCGGGGTTTTATTTTTTTCTTTTTTCTTGGTAATGTGTAACTCTCTGTTGTATACATAGTAGAAAACATATTCAACGATTCATACGGTAGCTTCCTTGAAACTTTTCTACAGACGCAATATACCTCAATTTTCTTTTGTTTGAGAA</gDNA_template>
            <first_frame> I  H  F  N  P  N  Y  L  F  L  P  S  S  Q  G  L  P  I  Y  C  F  T  S  V  F  E  F  Q  Y  F  F  R  Q  S  I  C  F  R  A  F  S  N  R  S  A  L  I  Q  :  E  M  A  A  E  P  T  K  E  H  I  D  V  A  E  T  E  P  V  A  S  S  T  D  N  E  E  K  T  K  K  K  K  K  K  G  F  F  S  M  I  W  N  S  L  F  R  S  K  K  D  D  F  E  K  R  L  Q  H  I  S  K  E  E  A  A  V  I  A  R  I  N  K  R  S  Q  N  W  R  R  M  T  R  H  L  I  V  L  S  V  I  F  E  :  V  I  A  V  G  Y  A  I  M  T  T  R  S  L  E  L  N  W  K  M  R  A  L  R  V  L  P  M  F  L  L  P  G  L  S  F  I  T  Y  S  A  I  G  S  F  T  R  M   : C  E  R  K  D  Q  K  T  L  E  K  L  R  A  E  R  Q  A  K  I  E  E  L  K  E  K  T  N  Y  Y  I  T  Q  Q  L  I  Q  :  R  Y  D  P  D  P  A  A  K  A  A  A  A  T  V  L  A  S  K  L  G  T  D  T  G  L  K  V  Y  V  G  D  D  T  K  H  N  V  P  T  G  K  S  N  G  V  E  V  V  Q  S  N  G  L  R  N  R  K  Q  A  R  S  S  S  P  E  S  A  V  I  D  H  P  G  A  E  M  L  Q  Q  A  Q  L  E  G  S  D  M  M  Q  H  Q  Q  T  V  V  E  H  Y  N  P  T  G  S  S  T  Q  D  G  G  W  I  A  R  I  A  A  L  L  V  G  E  D  P  T  Q  S  Y  A  L  I  C  G  N  C  H  M  H  N   : G  L  A  R  K  E  D  F  P  Y  I  T  Y  Y  C  P  H  C  H  A  L  N  R  P  K  Q  L  D  D  R  V  S  G  T  S  T  P  N  L  G  S  T  T  S  L  A  D  V  D  S  V  K  Q  V  S  G  S  T  P  D  K  I  P  A  S  A  S  G  S  P  V  A  A  P  V  E  T  E  G  D  N  I  V  S  S  A  S  N  S  *  *  M  G  S  F  E  *  S  R  A  G  E  C  F  F  S  L  Y  M  C  S  G  V  L  F  F  S  F  F  L  V  M  C  N  S  L  L  Y  T  *  *  K  T  Y  S  T  I  H  T  V  A  S  L  K  L  F  Y  R  R  N  I  P  Q  F  S  F  V  *  E </first_frame>
            <second_frame>  F  I  S  I  P  T  I  Y  S  Y  L  L  L  R  A  F  R  S  T  V  S  P  L  F  L  N  S  N  I  S  F  A  N  R  S  A  S  E  H  S  A  I  D  R  L  *  S  R :   K  W  L  L  S  L  Q  K  N  I  L  M  L  L  R  L  N  L  W  H  H  L  L  I  M  K  K  R  Q  K  R  R  K  R  R  D  F  F  R  *  Y  G  I  V  Y  L  G  P  K  R  M  I  L  R  R  D  C  S  I  F  P  R  R  R  L  L  L  L  P  E  S  I  S  D  P  K  I  G  E  G  *  R  G  I  S  L  Y  F  L  *  F  L  R :   L  L  Q  W  V  M  L  S  *  Q  H  D  P  L  S  *  T  G  K  *  G  H  C  E  F  Y  Q  C  F  C  C  L  A  Y  P  S  L  H  I  Q  R  L  E  V  L  Q  G  C  :  V  N  V  R  T  R  K  L  *  K  N  Y  E  L  K  G  K  P  R  L  R  N  *  K  R  R  Q  I  T  I  *  R  N  S  S  F  R :   D  M  T  P  T  Q  Q  L  R  Q  L  Q  P  L  S  L  H  P  S  L  V  Q  I  L  A  *  K  C  M  W  E  M  T  L  S  I  M  S  L  P  G  R  A  T  V  L  K  L  C  N  L  M  G  *  E  I  G  S  R  P  G  L  V  V  Q  R  V  L  *  *  I  I  L  V  Q  K  C  F  N  R  H  S  L  K  V  L  I  *  C  S  I  S  K  Q  L  L  S  I  T  I  Q  Q  V  P  A  H  K  M  E  D  G  L  H  E  L  Q  H  C  L  W  E  R  I  Q  P  S  H  M  H  S  S  V  A  I  A  I  C  T  M  :  G  *  P  G  K  R  T  S  H  T  *  P  T  I  A  L  I  A  M  P  *  I  G  L  S  S  L  M  I  V  S  L  V  Q  V  P  L  T  L  V  P  Q  L  L  W  L  M  L  I  R  S  N  K  L  V  D  L  L  R  I  K  Y  P  H  Q  Q  V  A  V  L  *  Q  L  Q  W  K  Q  K  V  I  T  *  C  P  V  L  L  T  A  S  R  W  G  V  L  N  R  V  V  Q  A  S  A  F  S  P  Y  I  C  V  A  G  F  Y  F  F  L  F  S  W  *  C  V  T  L  C  C  I  H  S  R  K  H  I  Q  R  F  I  R  *  L  P  *  N  F  S  T  D  A  I  Y  L  N  F  L  L  F  E   </second_frame>
            <third_frame>   S  F  Q  S  Q  L  F  I  L  T  F  F  S  G  P  S  D  L  L  F  H  L  C  F  *  I  P  I  F  L  S  P  I  D  L  L  Q  S  I  Q  Q  S  I  G  F  N  P   : G  N  G  C  *  A  Y  K  R  T  Y  *  C  C  *  D  *  T  C  G  I  I  Y  *  *  *  R  K  D  K  K  E  E  K  E  G  I  F  F  D  D  M  E  *  F  I  *  V  Q  K  G  *  F  *  E  E  I  A  A  Y  F  Q  G  G  G  C  C  Y  C  Q  N  Q  *  A  I  P  K  L  E  K  D  D  E  A  S  H  C  T  F  C  D  F  *   : G  Y  C  S  G  L  C  Y  H  D  N  T  I  P  *  A  E  L  E  N  E  G  I  A  S  F  T  N  V  S  V  A  W  L  I  L  H  Y  I  F  S  D  W  K  F  Y  K  D  V :   *  T  *  G  P  E  N  S  R  K  T  T  S  *  K  A  S  Q  D  *  G  T  E  R  E  D  K  L  L  Y  N  A  T  A  H  S   : E  I  *  P  R  P  S  S  *  G  S  C  S  H  C  P  C  I  Q  A  W  Y  R  Y  W  L  E  S  V  C  G  R  *  H  *  A  *  C  P  Y  R  E  E  Q  R  C  *  S  C  A  I  *  W  A  E  K  *  E  A  G  Q  V  *  *  S  R  E  C  C  N  R  S  S  W  C  R  N  A  S  T  G  T  A  *  R  F  *  Y  D  A  A  S  A  N  S  C  *  A  L  Q  S  N  R  F  Q  H  T  R  W  R  M  D  C  T  N  C  S  I  A  C  G  R  G  S  N  P  V  I  C  T  H  L  W  Q  L  P  Y  A  Q  W :   V  S  Q  E  R  G  L  P  I  H  N  L  L  L  P  S  L  P  C  P  K  *  A  *  A  A  *  *  S  C  L  W  Y  K  Y  P  *  P  W  F  H  N  F  F  G  *  C  *  F  G  Q  T  S  *  W  I  Y  S  G  *  N  T  R  I  S  K  W  Q  S  C  S  S  S  S  G  N  R  R  *  *  H  S  V  Q  C  F  *  Q  L  V  D  G  E  F  *  I  E  S  C  R  R  V  L  F  L  P  I  Y  V  *  R  G  F  I  F  F  F  F  L  G  N  V  *  L  S  V  V  Y  I  V  E  N  I  F  N  D  S  Y  G  S  F  L  E  T  F  L  Q  T  Q  Y  T  S  I  F  F  C  L  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42072" stop="41929"/>
                    <exon start="41030" stop="40752"/>
                    <exon start="39274" stop="39130"/>
                    <exon start="35530" stop="35421"/>
                    <exon start="35171" stop="34754"/>
                    <exon start="34655" stop="34387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1362</number_coding_nucleotides>
                  <number_encoded_amino_acids>454</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IHFNPNYLFLPSSQGLPIYCFTSVFEFQYFFRQSICFRAFSNRSALIQEMAAEPTKEHIDVAETEPVASSTDNEEKTKKKKKKGFFSMIWNSLFRSKKDDFEKRLQHISKEEAAVIARINKRSQNWRRMTRHLIVLSVIFEVIAVGYAIMTTRSLELNWKMRALRVLPMFLLPGLSFITYSAIGSFTRMCERKDQKTLEKLRAERQAKIEELKEKTNYYITQQLIQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNGVEVVQSNGLRNRKQARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTSLADVDSVKQVSGSTPDKIPASASGSPVAAPVETEGDNIVSSASNS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="35446" e_stop="34754"/>
            <exon e_start="34655" e_stop="34509"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.885" acc_prob="0.937" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="35446" e_stop="34754" e_length="693"/>
          </exon>
          <intron i_serial="1" don_prob="0.885" acc_prob="0.937">
            <gDNA_intron_boundary i_start="34753" i_stop="34656" i_length="98"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34655" e_stop="34509" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35446" stop="34754"/>
              <exon start="34655" stop="34509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726782" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTATATAACGCAACAGCTCATTCAGGTGATAGCCCATATGCAAGGTTTTGGGCTTATACAAGTTTCACATGTTATTAACCATGAGTACTGTGATCAAATAATCTTTCTTGTGTTAAGAAATAAGAAGGAAAAAAAGAACCATGAAATTGCACTCTGAGAGACTTATTTAGTATTACATTTCTCACTGTTTTGTCCTTGCCTCTATCGTCGTGAATTTCCAAAAAAACCTTTTTTTTAACAATTTCCAAGCATCATTGTTGAATCTTTTGTGCAGAGATATGACCCCGACCCAGCAGCTAAGGCAGCTGCAGCCACTGTCCTTGCATCCAAGCTTGGTACAGATACTGGCTTGAAAGTGTATGTGGGAGATGACACTAAGCATAATGTCCCTACCGGGAAGAGCAACGGTGTTGAAGTTGTGCAATCTAATGGGCTGAGAAATAGGAAGCAGGCCAGGTCTAGTAGTCCAGAGAGTGCTGTAATAGATCATCCTGGTGCAGAAATGCTTCAACAGGCACAGCTTGAAGGTTCTGATATGATGCAGCATCAGCAAACAGTTGTTGAGCATTACAATCCAACAGGTTCCAGCACACAAGATGGAGGATGGATTGCACGAATTGCAGCATTGCTTGTGGGAGAGGATCCAACCCAGTCATATGCACTCATCTGTGGCAATTGCCATATGCACAATG : GGTTAGCCAGGAAAGAGGACTTCCCATACATAACCTACTATTGCCCTCATTGCCATGCCCTAAATAGGCCTAAGCAGCTTGATGATCGTGTCTCTGGTACAAGTACCCCTAACCTTGGTTCCACAACTTCTTTGGCTGATGTTGATT</gDNA_template>
            <first_frame> T  I  *  R  N  S  S  F  R  *  *  P  I  C  K  V  L  G  L  Y  K  F  H  M  L  L  T  M  S  T  V  I  K  *  S  F  L  C  *  E  I  R  R  K  K  R  T  M  K  L  H  S  E  R  L  I  *  Y  Y  I  S  H  C  F  V  L  A  S  I  V  V  N  F  Q  K  N  L  F  F  N  N  F  Q  A  S  L  L  N  L  L  C  R  D  M  T  P  T  Q  Q  L  R  Q  L  Q  P  L  S  L  H  P  S  L  V  Q  I  L  A  *  K  C  M  W  E  M  T  L  S  I  M  S  L  P  G  R  A  T  V  L  K  L  C  N  L  M  G  *  E  I  G  S  R  P  G  L  V  V  Q  R  V  L  *  *  I  I  L  V  Q  K  C  F  N  R  H  S  L  K  V  L  I  *  C  S  I  S  K  Q  L  L  S  I  T  I  Q  Q  V  P  A  H  K  M  E  D  G  L  H  E  L  Q  H  C  L  W  E  R  I  Q  P  S  H  M  H  S  S  V  A  I  A  I  C  T  M  :  G  *  P  G  K  R  T  S  H  T  *  P  T  I  A  L  I  A  M  P  *  I  G  L  S  S  L  M  I  V  S  L  V  Q  V  P  L  T  L  V  P  Q  L  L  W  L  M  L  I </first_frame>
            <second_frame>  L  Y  N  A  T  A  H  S  G  D  S  P  Y  A  R  F  W  A  Y  T  S  F  T  C  Y  *  P  *  V  L  *  S  N  N  L  S  C  V  K  K  *  E  G  K  K  E  P  *  N  C  T  L  R  D  L  F  S  I  T  F  L  T  V  L  S  L  P  L  S  S  *  I  S  K  K  T  F  F  L  T  I  S  K  H  H  C  *  I  F  C  A  E  I  *  P  R  P  S  S  *  G  S  C  S  H  C  P  C  I  Q  A  W  Y  R  Y  W  L  E  S  V  C  G  R  *  H  *  A  *  C  P  Y  R  E  E  Q  R  C  *  S  C  A  I  *  W  A  E  K  *  E  A  G  Q  V  *  *  S  R  E  C  C  N  R  S  S  W  C  R  N  A  S  T  G  T  A  *  R  F  *  Y  D  A  A  S  A  N  S  C  *  A  L  Q  S  N  R  F  Q  H  T  R  W  R  M  D  C  T  N  C  S  I  A  C  G  R  G  S  N  P  V  I  C  T  H  L  W  Q  L  P  Y  A  Q  W :   V  S  Q  E  R  G  L  P  I  H  N  L  L  L  P  S  L  P  C  P  K  *  A  *  A  A  *  *  S  C  L  W  Y  K  Y  P  *  P  W  F  H  N  F  F  G  *  C  *   </second_frame>
            <third_frame>   Y  I  T  Q  Q  L  I  Q  V  I  A  H  M  Q  G  F  G  L  I  Q  V  S  H  V  I  N  H  E  Y  C  D  Q  I  I  F  L  V  L  R  N  K  K  E  K  K  N  H  E  I  A  L  *  E  T  Y  L  V  L  H  F  S  L  F  C  P  C  L  Y  R  R  E  F  P  K  K  P  F  F  *  Q  F  P  S  I  I  V  E  S  F  V  Q  R  Y  D  P  D  P  A  A  K  A  A  A  A  T  V  L  A  S  K  L  G  T  D  T  G  L  K  V  Y  V  G  D  D  T  K  H  N  V  P  T  G  K  S  N  G  V  E  V  V  Q  S  N  G  L  R  N  R  K  Q  A  R  S  S  S  P  E  S  A  V  I  D  H  P  G  A  E  M  L  Q  Q  A  Q  L  E  G  S  D  M  M  Q  H  Q  Q  T  V  V  E  H  Y  N  P  T  G  S  S  T  Q  D  G  G  W  I  A  R  I  A  A  L  L  V  G  E  D  P  T  Q  S  Y  A  L  I  C  G  N  C  H  M  H  N   : G  L  A  R  K  E  D  F  P  Y  I  T  Y  Y  C  P  H  C  H  A  L  N  R  P  K  Q  L  D  D  R  V  S  G  T  S  T  P  N  L  G  S  T  T  S  L  A  D  V  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="35207" stop="34754"/>
                    <exon start="34655" stop="34510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFPSIIVESFVQRYDPDPAAKAAAATVLASKLGTDTGLKVYVGDDTKHNVPTGKSNGVEVVQSNGLRNRKQARSSSPESAVIDHPGAEMLQQAQLEGSDMMQHQQTVVEHYNPTGSSTQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPYITYYCPHCHALNRPKQLDDRVSGTSTPNLGSTTSLADVD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="49148" PGL_stop="66313"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64166" e_stop="65626"/>
            <exon e_start="65770" e_stop="66140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64166" e_stop="65626" e_length="1461"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65770" e_stop="66140" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64166" stop="64725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64166" stop="64676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64166" stop="64600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64237" stop="64728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64243" stop="64725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64669" stop="65288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65103" stop="65626"/>
              <exon start="65770" stop="65791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65322" stop="65626"/>
              <exon start="65770" stop="66008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65399" stop="65626"/>
              <exon start="65770" stop="66140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65566" stop="65626"/>
              <exon start="65770" stop="66135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGAAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAACTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG : GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGATATA</gDNA_template>
            <first_frame> E  G  R  S  R  S  R  S  R  G  R  G  R  G  E  G  R  S  R  S  R  S  R  G  R  D  K  F  R  T  R  S  R  S  R  S  R  D  R  G  S  M  R  V  Q  N  R  S  R  S  P  H  N  T  K  R  D  P  Y  A  S  G  D  R  R  A  S  L  H  I  S  S  Q  V  C  R  N  F  A  A  G  N  C  R  R  G  S  D  C  R  F  I  H  L  D  S  A  S  H  R  D  E  G  H  S  E  D  N  L  S  E  R  L  G  S  R  P  E  R  G  H  I  S  R  Y  N  D  S  E  G  P  G  Y  Q  S  R  D  M  L  P  D  M  H  H  L  E  D  E  L  N  R  N  R  S  R  G  T  I  T  C  R  N  F  V  K  S  N  C  R  W  G  A  S  C  R  F  S  H  D  G  A  S  G  D  Y  Y  D  K  G  T  R  S  T  S  F  E  H  G  Q  D  N  Q  A  T  R  T  G  K  S  L  C  E  Y  F  A  A  G  K  C  Y  K  D  N  C  E  F  S  H  D  A  T  S  R  N  H  E  I  R  P  L  D  D  I  G  E  Q  V  H  Q  M  E  S  C  P  A  S  M  I  K  K  L  E  E  G  L  Q  E  A  Q  L  Q  S  V  L  N  P  S  G  P  S  G  M  L  P  S  N  P  I  S  S  L  V  H  A  L  Y  G  Q  T  N  P  E  M  R  V  L  D  N  Y  H  P  P  D  G  L  E  L  N  T  S  G  N  F  K  L  P  P  D  N  S  F  Y  L  D  R  D  S  I  K  V  P  M  D  Q  V  N  Q  T  S  T  V  D  P  E  L  G  N  N  D  Q  I  D  E  V  K  Q  Q  E  N  E  L  V  E  V  D  G  K  D  K  L  A  P  G  E  S  K  D  V  Q  E  N  D  H  P  G  T  M  N  L  H  G  K  V  E  E  G  S  G  N  K  D  E  K  V  M  R  L  F  K  N  A  L  I  E  F  V  K  E  I  L  K  P  I  W  K  E  G  K  M  S  R  E  V  H  K  T  I  V  K  K  V  V  D  K  V  T  G  A  I  Q  G  E  Q  V  P  K  T  Q  E  K  I  E  Q  Y  L  S  H  S  K  P  K  I  T  K  L  V  Q  :  A  Y  V  E  R  L  L  K  N  E  A  *  G  A  G  L  P  F  S  S  G  K  F  K  F  N  K  D  L  I  F  Q  H  V  L  E  G  L  V  M  L  D  I  F  V  C  *  N  H  I  S  S  *  C  D  R  F  G  L  A  S  C  F  L  L  F  R  P  F  I  F  R  F  T  M  F  E  H  Y  M  F  L  S  Y  R  F  N  H  M  V  V  V  L  I  S  Q  S  P  C  V  F  L  L  S  R  L  *  S  *  L  L  Y  D  F  I  S  E  Y  L  V  C  L  I   </first_frame>
            <second_frame>  K  V  G  A  G  V  A  A  G  D  G  E  G  E  K  V  G  A  G  V  A  A  G  D  G  T  S  L  G  P  G  A  E  A  G  A  G  T  G  V  V  *  E  F  R  I  G  V  V  V  L  I  I  L  N  V  I  H  M  H  Q  V  I  E  E  L  A  F  I  Y  L  P  R  Y  A  E  I  L  Q  R  G  I  V  G  E  A  V  I  A  G  S  F  I  *  I  L  P  V  I  G  M  K  V  I  Q  R  T  T  C  Q  K  D  W  V  V  D  L  S  V  G  I  S  Q  G  I  M  I  V  K  V  L  G  T  N  Q  G  T  C  F  L  I  C  I  I  W  R  M  S  *  T  E  I  G  V  E  V  Q  L  L  A  G  I  L  *  K  A  T  V  A  G  V  H  H  A  D  F  L  M  M  V  P  Q  V  I  T  M  T  R  A  L  G  V  H  P  L  S  M  V  R  T  I  K  Q  P  E  P  G  N  H  F  V  S  T  L  L  Q  E  S  A  T  R  I  I  V  N  S  L  T  M  P  H  Q  E  I  M  K  L  G  P  W  M  T  L  V  S  K  Y  I  K  W  N  P  V  Q  H  L  *  *  R  N  *  R  K  D  C  K  K  P  N  Y  K  V  S  *  I  P  L  V  L  L  E  C  Y  L  Q  I  P  F  L  H  L  F  M  L  Y  M  V  R  P  I  L  R  *  G  F  *  I  T  I  I  L  Q  M  A  *  S  *  I  H  L  A  T  L  S  C  P  R  T  I  H  S  I  W  I  E  I  V  L  R  F  P  W  T  K  *  I  K  H  L  L  L  I  L  N  L  E  I  M  I  K  L  M  K  *  S  S  R  R  M  N  *  L  K  L  M  E  R  I  N  *  L  R  G  S  P  R  M  C  K  K  M  I  I  Q  E  L  *  I  C  M  E  R  L  R  R  E  A  V  T  K  M  K  R  *  C  D  Y  S  K  T  L  *  *  S  S  S  R  R  S  *  N  P  F  G  K  K  V  R  *  A  E  K  F  I  K  Q  L  L  R  R  W  L  I  R  *  L  V  R  F  K  E  N  K  S  L  R  R  K  R  R  *  S  N  I  C  P  I  Q  S  L  K  L  P  N  L  Y  R :   H  M  W  S  D  F  *  R  M  K  L  E  V  P  D  S  P  S  L  L  E  N  S  N  S  I  R  T  *  F  S  N  M  Y  W  K  V  *  L  C  *  I  S  L  F  A  E  I  T  Y  P  H  S  V  I  D  L  V  *  Q  A  V  F  C  Y  S  D  H  L  F  S  D  L  P  C  L  S  I  I  C  S  F  L  I  D  S  I  T  W  *  L  C  *  F  L  S  L  P  A  F  S  C  *  V  D  C  S  L  N  F  F  M  I  L  L  V  S  T  L  F  V  *  Y  </second_frame>
            <third_frame>   R  *  E  Q  E  S  Q  Q  G  T  G  K  G  R  R  *  E  Q  E  S  Q  Q  G  T  G  Q  V  *  D  Q  E  Q  K  Q  E  P  G  Q  G  *  Y  E  S  S  E  *  E  S  *  S  S  *  Y  *  T  *  S  I  C  I  R  *  *  K  S  *  P  S  Y  I  F  P  G  M  Q  K  F  C  S  G  E  L  *  E  R  Q  *  L  Q  V  H  S  S  R  F  C  Q  S  *  G  *  R  S  F  R  G  Q  L  V  R  K  I  G  *  S  T  *  A  W  A  Y  L  K  V  *  *  *  *  R  S  W  V  P  I  K  G  H  A  S  *  Y  A  S  F  G  G  *  A  E  Q  K  S  E  *  R  Y  N  Y  L  Q  E  F  C  E  K  Q  L  S  L  G  C  I  M  Q  I  F  S  *  W  C  L  R  *  L  L  *  Q  G  H  S  E  Y  I  L  *  A  W  S  G  Q  S  S  N  Q  N  R  E  I  T  L  *  V  L  C  C  R  K  V  L  Q  G  *  L  *  I  L  S  R  C  H  I  K  K  S  *  N  *  A  L  G  *  H  W  *  A  S  T  S  N  G  I  L  S  S  I  Y  D  K  E  I  R  G  R  T  A  R  S  P  T  T  K  C  L  K  S  L  W  S  F  W  N  A  T  F  K  S  H  F  F  T  C  S  C  S  I  W  S  D  Q  S  *  D  E  G  S  R  *  L  S  S  S  R  W  L  R  A  E  Y  I  W  Q  L  *  V  A  P  G  Q  F  I  L  F  G  *  R  *  Y  *  G  S  H  G  P  S  E  S  N  I  Y  C  *  S  *  T  W  K  *  *  S  N  *  *  S  E  A  A  G  E  *  I  S  *  S  *  W  K  G  *  I  S  S  G  G  V  Q  G  C  A  R  K  *  S  S  R  N  Y  E  S  A  W  K  G  *  G  G  K  R  *  Q  R  *  K  G  D  A  I  I  Q  K  R  S  N  R  V  R  Q  G  D  P  K  T  H  L  E  R  R  *  D  E  Q  R  S  S  *  N  N  C  *  E  G  G  *  *  G  D  W  C  D  S  R  R  T  S  P  *  D  A  R  E  D  R  A  I  S  V  P  F  K  A  *  N  Y  Q  T  C  T   : G  I  C  G  A  T  S  E  E  *  S  L  R  C  R  T  P  L  L  F  W  K  I  Q  I  Q  *  G  L  D  F  P  T  C  T  G  R  F  S  Y  V  R  Y  L  C  L  L  K  S  H  I  L  I  V  *  *  I  W  F  S  K  L  F  S  V  I  P  T  I  Y  F  P  I  Y  H  V  *  A  L  Y  V  P  F  L  *  I  Q  S  H  G  S  C  A  D  F  S  V  S  L  R  F  L  V  E  S  I  V  V  L  T  S  L  *  F  Y  *  *  V  P  C  L  S  D  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64166" stop="65626"/>
                    <exon start="65770" stop="65805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGRSRSRSRGRGRGEGRSRSRSRGRDKFRTRSRSRSRDRGSMRVQNRSRSPHNTKRDPYASGDRRASLHISSQVCRNFAAGNCRRGSDCRFIHLDSASHRDEGHSEDNLSERLGSRPERGHISRYNDSEGPGYQSRDMLPDMHHLEDELNRNRSRGTITCRNFVKSNCRWGASCRFSHDGASGDYYDKGTRSTSFEHGQDNQATRTGKSLCEYFAAGKCYKDNCEFSHDATSRNHEIRPLDDIGEQVHQMESCPASMIKKLEEGLQEAQLQSVLNPSGPSGMLPSNPISSLVHALYGQTNPEMRVLDNYHPPDGLELNTSGNFKLPPDNSFYLDRDSIKVPMDQVNQTSTVDPELGNNDQIDEVKQQENELVEVDGKDKLAPGESKDVQENDHPGTMNLHGKVEEGSGNKDEKVMRLFKNALIEFVKEILKPIWKEGKMSREVHKTIVKKVVDKVTGAIQGEQVPKTQEKIEQYLSHSKPKITKLVQAYVERLLKNEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64166" e_stop="65626"/>
            <exon e_start="65770" e_stop="66137"/>
            <exon e_start="66284" e_stop="66313"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64166" e_stop="65626" e_length="1461"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65770" e_stop="66137" e_length="368"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66138" i_stop="66283" i_length="146"/>
          </intron>
          <exon e_serial="3" e_score="0.600">
            <gDNA_exon_boundary e_start="66284" e_stop="66313" e_length="30"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64166" stop="64725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323077" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64166" stop="64676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64166" stop="64600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64237" stop="64728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64243" stop="64725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64669" stop="65288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65103" stop="65626"/>
              <exon start="65770" stop="65791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65322" stop="65626"/>
              <exon start="65770" stop="66008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65566" stop="65626"/>
              <exon start="65770" stop="66137"/>
              <exon start="66284" stop="66313"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349703" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65566" stop="65626"/>
              <exon start="65770" stop="66135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGAAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAACTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG : GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGAT : AATTACAAAAAAAATAAAATAAAATAAAAA</gDNA_template>
            <first_frame> E  G  R  S  R  S  R  S  R  G  R  G  R  G  E  G  R  S  R  S  R  S  R  G  R  D  K  F  R  T  R  S  R  S  R  S  R  D  R  G  S  M  R  V  Q  N  R  S  R  S  P  H  N  T  K  R  D  P  Y  A  S  G  D  R  R  A  S  L  H  I  S  S  Q  V  C  R  N  F  A  A  G  N  C  R  R  G  S  D  C  R  F  I  H  L  D  S  A  S  H  R  D  E  G  H  S  E  D  N  L  S  E  R  L  G  S  R  P  E  R  G  H  I  S  R  Y  N  D  S  E  G  P  G  Y  Q  S  R  D  M  L  P  D  M  H  H  L  E  D  E  L  N  R  N  R  S  R  G  T  I  T  C  R  N  F  V  K  S  N  C  R  W  G  A  S  C  R  F  S  H  D  G  A  S  G  D  Y  Y  D  K  G  T  R  S  T  S  F  E  H  G  Q  D  N  Q  A  T  R  T  G  K  S  L  C  E  Y  F  A  A  G  K  C  Y  K  D  N  C  E  F  S  H  D  A  T  S  R  N  H  E  I  R  P  L  D  D  I  G  E  Q  V  H  Q  M  E  S  C  P  A  S  M  I  K  K  L  E  E  G  L  Q  E  A  Q  L  Q  S  V  L  N  P  S  G  P  S  G  M  L  P  S  N  P  I  S  S  L  V  H  A  L  Y  G  Q  T  N  P  E  M  R  V  L  D  N  Y  H  P  P  D  G  L  E  L  N  T  S  G  N  F  K  L  P  P  D  N  S  F  Y  L  D  R  D  S  I  K  V  P  M  D  Q  V  N  Q  T  S  T  V  D  P  E  L  G  N  N  D  Q  I  D  E  V  K  Q  Q  E  N  E  L  V  E  V  D  G  K  D  K  L  A  P  G  E  S  K  D  V  Q  E  N  D  H  P  G  T  M  N  L  H  G  K  V  E  E  G  S  G  N  K  D  E  K  V  M  R  L  F  K  N  A  L  I  E  F  V  K  E  I  L  K  P  I  W  K  E  G  K  M  S  R  E  V  H  K  T  I  V  K  K  V  V  D  K  V  T  G  A  I  Q  G  E  Q  V  P  K  T  Q  E  K  I  E  Q  Y  L  S  H  S  K  P  K  I  T  K  L  V  Q  :  A  Y  V  E  R  L  L  K  N  E  A  *  G  A  G  L  P  F  S  S  G  K  F  K  F  N  K  D  L  I  F  Q  H  V  L  E  G  L  V  M  L  D  I  F  V  C  *  N  H  I  S  S  *  C  D  R  F  G  L  A  S  C  F  L  L  F  R  P  F  I  F  R  F  T  M  F  E  H  Y  M  F  L  S  Y  R  F  N  H  M  V  V  V  L  I  S  Q  S  P  C  V  F  L  L  S  R  L  *  S  *  L  L  Y  D  F  I  S  E  Y  L  V  C  L  I :   I  T  K  K  I  K  *  N  K   </first_frame>
            <second_frame>  K  V  G  A  G  V  A  A  G  D  G  E  G  E  K  V  G  A  G  V  A  A  G  D  G  T  S  L  G  P  G  A  E  A  G  A  G  T  G  V  V  *  E  F  R  I  G  V  V  V  L  I  I  L  N  V  I  H  M  H  Q  V  I  E  E  L  A  F  I  Y  L  P  R  Y  A  E  I  L  Q  R  G  I  V  G  E  A  V  I  A  G  S  F  I  *  I  L  P  V  I  G  M  K  V  I  Q  R  T  T  C  Q  K  D  W  V  V  D  L  S  V  G  I  S  Q  G  I  M  I  V  K  V  L  G  T  N  Q  G  T  C  F  L  I  C  I  I  W  R  M  S  *  T  E  I  G  V  E  V  Q  L  L  A  G  I  L  *  K  A  T  V  A  G  V  H  H  A  D  F  L  M  M  V  P  Q  V  I  T  M  T  R  A  L  G  V  H  P  L  S  M  V  R  T  I  K  Q  P  E  P  G  N  H  F  V  S  T  L  L  Q  E  S  A  T  R  I  I  V  N  S  L  T  M  P  H  Q  E  I  M  K  L  G  P  W  M  T  L  V  S  K  Y  I  K  W  N  P  V  Q  H  L  *  *  R  N  *  R  K  D  C  K  K  P  N  Y  K  V  S  *  I  P  L  V  L  L  E  C  Y  L  Q  I  P  F  L  H  L  F  M  L  Y  M  V  R  P  I  L  R  *  G  F  *  I  T  I  I  L  Q  M  A  *  S  *  I  H  L  A  T  L  S  C  P  R  T  I  H  S  I  W  I  E  I  V  L  R  F  P  W  T  K  *  I  K  H  L  L  L  I  L  N  L  E  I  M  I  K  L  M  K  *  S  S  R  R  M  N  *  L  K  L  M  E  R  I  N  *  L  R  G  S  P  R  M  C  K  K  M  I  I  Q  E  L  *  I  C  M  E  R  L  R  R  E  A  V  T  K  M  K  R  *  C  D  Y  S  K  T  L  *  *  S  S  S  R  R  S  *  N  P  F  G  K  K  V  R  *  A  E  K  F  I  K  Q  L  L  R  R  W  L  I  R  *  L  V  R  F  K  E  N  K  S  L  R  R  K  R  R  *  S  N  I  C  P  I  Q  S  L  K  L  P  N  L  Y  R :   H  M  W  S  D  F  *  R  M  K  L  E  V  P  D  S  P  S  L  L  E  N  S  N  S  I  R  T  *  F  S  N  M  Y  W  K  V  *  L  C  *  I  S  L  F  A  E  I  T  Y  P  H  S  V  I  D  L  V  *  Q  A  V  F  C  Y  S  D  H  L  F  S  D  L  P  C  L  S  I  I  C  S  F  L  I  D  S  I  T  W  *  L  C  *  F  L  S  L  P  A  F  S  C  *  V  D  C  S  L  N  F  F  M  I  L  L  V  S  T  L  F  V  *   : *  L  Q  K  K  *  N  K  I  K  </second_frame>
            <third_frame>   R  *  E  Q  E  S  Q  Q  G  T  G  K  G  R  R  *  E  Q  E  S  Q  Q  G  T  G  Q  V  *  D  Q  E  Q  K  Q  E  P  G  Q  G  *  Y  E  S  S  E  *  E  S  *  S  S  *  Y  *  T  *  S  I  C  I  R  *  *  K  S  *  P  S  Y  I  F  P  G  M  Q  K  F  C  S  G  E  L  *  E  R  Q  *  L  Q  V  H  S  S  R  F  C  Q  S  *  G  *  R  S  F  R  G  Q  L  V  R  K  I  G  *  S  T  *  A  W  A  Y  L  K  V  *  *  *  *  R  S  W  V  P  I  K  G  H  A  S  *  Y  A  S  F  G  G  *  A  E  Q  K  S  E  *  R  Y  N  Y  L  Q  E  F  C  E  K  Q  L  S  L  G  C  I  M  Q  I  F  S  *  W  C  L  R  *  L  L  *  Q  G  H  S  E  Y  I  L  *  A  W  S  G  Q  S  S  N  Q  N  R  E  I  T  L  *  V  L  C  C  R  K  V  L  Q  G  *  L  *  I  L  S  R  C  H  I  K  K  S  *  N  *  A  L  G  *  H  W  *  A  S  T  S  N  G  I  L  S  S  I  Y  D  K  E  I  R  G  R  T  A  R  S  P  T  T  K  C  L  K  S  L  W  S  F  W  N  A  T  F  K  S  H  F  F  T  C  S  C  S  I  W  S  D  Q  S  *  D  E  G  S  R  *  L  S  S  S  R  W  L  R  A  E  Y  I  W  Q  L  *  V  A  P  G  Q  F  I  L  F  G  *  R  *  Y  *  G  S  H  G  P  S  E  S  N  I  Y  C  *  S  *  T  W  K  *  *  S  N  *  *  S  E  A  A  G  E  *  I  S  *  S  *  W  K  G  *  I  S  S  G  G  V  Q  G  C  A  R  K  *  S  S  R  N  Y  E  S  A  W  K  G  *  G  G  K  R  *  Q  R  *  K  G  D  A  I  I  Q  K  R  S  N  R  V  R  Q  G  D  P  K  T  H  L  E  R  R  *  D  E  Q  R  S  S  *  N  N  C  *  E  G  G  *  *  G  D  W  C  D  S  R  R  T  S  P  *  D  A  R  E  D  R  A  I  S  V  P  F  K  A  *  N  Y  Q  T  C  T   : G  I  C  G  A  T  S  E  E  *  S  L  R  C  R  T  P  L  L  F  W  K  I  Q  I  Q  *  G  L  D  F  P  T  C  T  G  R  F  S  Y  V  R  Y  L  C  L  L  K  S  H  I  L  I  V  *  *  I  W  F  S  K  L  F  S  V  I  P  T  I  Y  F  P  I  Y  H  V  *  A  L  Y  V  P  F  L  *  I  Q  S  H  G  S  C  A  D  F  S  V  S  L  R  F  L  V  E  S  I  V  V  L  T  S  L  *  F  Y  *  *  V  P  C  L  S  D  :  N  Y  K  K  N  K  I  K  *  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64166" stop="65626"/>
                    <exon start="65770" stop="65805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1494</number_coding_nucleotides>
                  <number_encoded_amino_acids>498</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGRSRSRSRGRGRGEGRSRSRSRGRDKFRTRSRSRSRDRGSMRVQNRSRSPHNTKRDPYASGDRRASLHISSQVCRNFAAGNCRRGSDCRFIHLDSASHRDEGHSEDNLSERLGSRPERGHISRYNDSEGPGYQSRDMLPDMHHLEDELNRNRSRGTITCRNFVKSNCRWGASCRFSHDGASGDYYDKGTRSTSFEHGQDNQATRTGKSLCEYFAAGKCYKDNCEFSHDATSRNHEIRPLDDIGEQVHQMESCPASMIKKLEEGLQEAQLQSVLNPSGPSGMLPSNPISSLVHALYGQTNPEMRVLDNYHPPDGLELNTSGNFKLPPDNSFYLDRDSIKVPMDQVNQTSTVDPELGNNDQIDEVKQQENELVEVDGKDKLAPGESKDVQENDHPGTMNLHGKVEEGSGNKDEKVMRLFKNALIEFVKEILKPIWKEGKMSREVHKTIVKKVVDKVTGAIQGEQVPKTQEKIEQYLSHSKPKITKLVQAYVERLLKNEA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="49148" e_stop="49458"/>
            <exon e_start="63416" e_stop="63743"/>
            <exon e_start="64167" e_stop="65626"/>
            <exon e_start="65770" e_stop="66140"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.807" e_score="0.958"/>
          <exon-intron don_prob="0.979" acc_prob="0.000" e_score="0.985"/>
          <exon-intron don_prob="0.994" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="49148" e_stop="49458" e_length="311"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.807">
            <gDNA_intron_boundary i_start="49459" i_stop="63415" i_length="13957"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="63416" e_stop="63743" e_length="328"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63744" i_stop="64166" i_length="423"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64167" e_stop="65626" e_length="1460"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="1.000">
            <gDNA_intron_boundary i_start="65627" i_stop="65769" i_length="143"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="65770" e_stop="66140" e_length="371"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49148" stop="49458"/>
              <exon start="63416" stop="63743"/>
              <exon start="64167" stop="64347"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49149" stop="49458"/>
              <exon start="63416" stop="63579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64237" stop="64728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367737" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64243" stop="64725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64669" stop="65288"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65103" stop="65626"/>
              <exon start="65770" stop="65791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E359265" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65322" stop="65626"/>
              <exon start="65770" stop="66008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E414549" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65399" stop="65626"/>
              <exon start="65770" stop="66140"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65566" stop="65626"/>
              <exon start="65770" stop="66135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352753" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATTTTTGAGTGTTTTTTCCTACTTTGTATTTGTTTTTGATCTGTTTCACGGACTCAAACCAAATCTTGATTCTTTGGCATTTTCTCACAACTTCCCGTCTACCCCCAGAGAATCAGCTGAATCAAGAACTGATTTTTAGATTATGTTCTCTTGATTCTTTGAAATGGGAACTTGATTTTCAGTTTTCCAATTCGAATGTTTGTCTTCCTTAAGCTGGAAAACTTGAAAAAGGAAACCCCAGAATGGAGGAAGTTTAGCTGGTGTACCACCTAGTCCTATTGAACGTAGACAGAGGCTTTCTGTATTCAC : GTCTCCAAATATGCTTCATGAAAGAACATAAATATTGCTGATATTTTCTATCAAGGGCCACTATGGGTGAAAATGCAAAAAAGCGAAAGTCTTTGTGGGATGCTGAAGAAGAGAGTCCACCGAAATATGAGGAGTGGGGACCTCCAAAACCTGAAAATTCATGGCAGTCCAAAAGTAGATCAGGTTGGTCGTCTGGGGACAATGTTACAGGAACTGAAGATTTGAGGAAGGATAACTATCATTACAAGAGCATGTCTCCAGCTTTTGAAAGGCGGGAAAGGCGAAGCAATAGCCACTCTCCAGATAATGGTCGGGCCCAGTCTCACAG : AAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGGAAGGGGAGAAGGTAGGAGCAGGAGTCGCAGCAGGGGACGGGACAAGTTTAGGACCAGGAGCAGAAGCAGGAGCCGGGACAGGGGTAGTATGAGAGTTCAGAATAGGAGTCGTAGTCCTCATAATACTAAACGTGATCCATATGCATCAGGTGATAGAAGAGCTAGCCTTCATATATCTTCCCAGGTATGCAGAAATTTTGCAGCGGGGAATTGTAGGAGAGGCAGTGATTGCAGGTTCATTCATCTAGATTCTGCCAGTCATAGGGATGAAGGTCATTCAGAGGACAACTTGTCAGAAAGATTGGGTAGTCGACCTGAGCGTGGGCATATCTCAAGGTATAATGATAGTGAAGGTCCTGGGTACCAATCAAGGGACATGCTTCCTGATATGCATCATTTGGAGGATGAGCTGAACAGAAATCGGAGTAGAGGTACAATTACTTGCAGGAATTTTGTGAAAAGCAACTGTCGCTGGGGTGCATCATGCAGATTTTCTCATGATGGTGCCTCAGGTGATTACTATGACAAGGGCACTCGGAGTACATCCTTTGAGCATGGTCAGGACAATCAAGCAACCAGAACCGGGAAATCACTTTGTGAGTACTTTGCTGCAGGAAAGTGCTACAAGGATAATTGTGAATTCTCTCACGATGCCACATCAAGAAATCATGAAATTAGGCCCTTGGATGACATTGGTGAGCAAGTACATCAAATGGAATCCTGTCCAGCATCTATGATAAAGAAATTAGAGGAAGGACTGCAAGAAGCCCAACTACAAAGTGTCTTAAATCCCTCTGGTCCTTCTGGAATGCTACCTTCAAATCCCATTTCTTCACTTGTTCATGCTCTATATGGTCAGACCAATCCTGAGATGAGGGTTCTAGATAACTATCATCCTCCAGATGGCTTAGAGCTGAATACATCTGGCAACTTTAAGTTGCCCCCGGACAATTCATTCTATTTGGATAGAGATAGTATTAAGGTTCCCATGGACCAAGTGAATCAAACATCTACTGTTGATCCTGAACTTGGAAATAATGATCAAATTGATGAAGTGAAGCAGCAGGAGAATGAATTAGTTGAAGTTGATGGAAAGGATAAATTAGCTCCGGGGGAGTCCAAGGATGTGCAAGAAAATGATCATCCAGGAACTATGAATCTGCATGGAAAGGTTGAGGAGGGAAGCGGTAACAAAGATGAAAAGGTGATGCGATTATTCAAAAACGCTCTAATAGAGTTCGTCAAGGAGATCCTAAAACCCATTTGGAAAGAAGGTAAGATGAGCAGAGAAGTTCATAAAACAATTGTTAAGAAGGTGGTTGATAAGGTGACTGGTGCGATTCAAGGAGAACAAGTCCCTAAGACGCAAGAGAAGATAGAGCAATATCTGTCCCATTCAAAGCCTAAAATTACCAAACTTGTACAG : GCATATGTGGAGCGACTTCTGAAGAATGAAGCTTGAGGTGCCGGACTCCCCTTCTCTTCTGGAAAATTCAAATTCAATAAGGACTTGATTTTCCAACATGTACTGGAAGGTTTAGTTATGTTAGATATCTTTGTTTGCTGAAATCACATATCCTCATAGTGTGATAGATTTGGTTTAGCAAGCTGTTTTCTGTTATTCCGACCATTTATTTTCCGATTTACCATGTTTGAGCATTATATGTTCCTTTCTTATAGATTCAATCACATGGTAGTTGTGCTGATTTCTCAGTCTCCCTGCGTTTTCTTGTTGAGTCGATTGTAGTCTTAACTTCTTTATGATTTTATTAGTGAGTACCTTGTTTGTCTGATATA</gDNA_template>
            <first_frame> Q  F  L  S  V  F  S  Y  F  V  F  V  F  D  L  F  H  G  L  K  P  N  L  D  S  L  A  F  S  H  N  F  P  S  T  P  R  E  S  A  E  S  R  T  D  F  *  I  M  F  S  *  F  F  E  M  G  T  *  F  S  V  F  Q  F  E  C  L  S  S  L  S  W  K  T  *  K  R  K  P  Q  N  G  G  S  L  A  G  V  P  P  S  P  I  E  R  R  Q  R  L  S  V  F  T :   S  P  N  M  L  H  E  R  T  *  I  L  L  I  F  S  I  K  G  H  Y  G  *  K  C  K  K  A  K  V  F  V  G  C  *  R  R  E  S  T  E  I  *  G  V  G  T  S  K  T  *  K  F  M  A  V  Q  K  *  I  R  L  V  V  W  G  Q  C  Y  R  N  *  R  F  E  E  G  *  L  S  L  Q  E  H  V  S  S  F  *  K  A  G  K  A  K  Q  *  P  L  S  R  *  W  S  G  P  V  S  Q  :  K  V  G  A  G  V  A  A  G  D  G  E  G  E  K  V  G  A  G  V  A  A  G  D  G  T  S  L  G  P  G  A  E  A  G  A  G  T  G  V  V  *  E  F  R  I  G  V  V  V  L  I  I  L  N  V  I  H  M  H  Q  V  I  E  E  L  A  F  I  Y  L  P  R  Y  A  E  I  L  Q  R  G  I  V  G  E  A  V  I  A  G  S  F  I  *  I  L  P  V  I  G  M  K  V  I  Q  R  T  T  C  Q  K  D  W  V  V  D  L  S  V  G  I  S  Q  G  I  M  I  V  K  V  L  G  T  N  Q  G  T  C  F  L  I  C  I  I  W  R  M  S  *  T  E  I  G  V  E  V  Q  L  L  A  G  I  L  *  K  A  T  V  A  G  V  H  H  A  D  F  L  M  M  V  P  Q  V  I  T  M  T  R  A  L  G  V  H  P  L  S  M  V  R  T  I  K  Q  P  E  P  G  N  H  F  V  S  T  L  L  Q  E  S  A  T  R  I  I  V  N  S  L  T  M  P  H  Q  E  I  M  K  L  G  P  W  M  T  L  V  S  K  Y  I  K  W  N  P  V  Q  H  L  *  *  R  N  *  R  K  D  C  K  K  P  N  Y  K  V  S  *  I  P  L  V  L  L  E  C  Y  L  Q  I  P  F  L  H  L  F  M  L  Y  M  V  R  P  I  L  R  *  G  F  *  I  T  I  I  L  Q  M  A  *  S  *  I  H  L  A  T  L  S  C  P  R  T  I  H  S  I  W  I  E  I  V  L  R  F  P  W  T  K  *  I  K  H  L  L  L  I  L  N  L  E  I  M  I  K  L  M  K  *  S  S  R  R  M  N  *  L  K  L  M  E  R  I  N  *  L  R  G  S  P  R  M  C  K  K  M  I  I  Q  E  L  *  I  C  M  E  R  L  R  R  E  A  V  T  K  M  K  R  *  C  D  Y  S  K  T  L  *  *  S  S  S  R  R  S  *  N  P  F  G  K  K  V  R  *  A  E  K  F  I  K  Q  L  L  R  R  W  L  I  R  *  L  V  R  F  K  E  N  K  S  L  R  R  K  R  R  *  S  N  I  C  P  I  Q  S  L  K  L  P  N  L  Y  R :   H  M  W  S  D  F  *  R  M  K  L  E  V  P  D  S  P  S  L  L  E  N  S  N  S  I  R  T  *  F  S  N  M  Y  W  K  V  *  L  C  *  I  S  L  F  A  E  I  T  Y  P  H  S  V  I  D  L  V  *  Q  A  V  F  C  Y  S  D  H  L  F  S  D  L  P  C  L  S  I  I  C  S  F  L  I  D  S  I  T  W  *  L  C  *  F  L  S  L  P  A  F  S  C  *  V  D  C  S  L  N  F  F  M  I  L  L  V  S  T  L  F  V  *  Y  </first_frame>
            <second_frame>  N  F  *  V  F  F  P  T  L  Y  L  F  L  I  C  F  T  D  S  N  Q  I  L  I  L  W  H  F  L  T  T  S  R  L  P  P  E  N  Q  L  N  Q  E  L  I  F  R  L  C  S  L  D  S  L  K  W  E  L  D  F  Q  F  S  N  S  N  V  C  L  P  *  A  G  K  L  E  K  G  N  P  R  M  E  E  V  *  L  V  Y  H  L  V  L  L  N  V  D  R  G  F  L  Y  S   : R  L  Q  I  C  F  M  K  E  H  K  Y  C  *  Y  F  L  S  R  A  T  M  G  E  N  A  K  K  R  K  S  L  W  D  A  E  E  E  S  P  P  K  Y  E  E  W  G  P  P  K  P  E  N  S  W  Q  S  K  S  R  S  G  W  S  S  G  D  N  V  T  G  T  E  D  L  R  K  D  N  Y  H  Y  K  S  M  S  P  A  F  E  R  R  E  R  R  S  N  S  H  S  P  D  N  G  R  A  Q  S  H  R :   R  *  E  Q  E  S  Q  Q  G  T  G  K  G  R  R  *  E  Q  E  S  Q  Q  G  T  G  Q  V  *  D  Q  E  Q  K  Q  E  P  G  Q  G  *  Y  E  S  S  E  *  E  S  *  S  S  *  Y  *  T  *  S  I  C  I  R  *  *  K  S  *  P  S  Y  I  F  P  G  M  Q  K  F  C  S  G  E  L  *  E  R  Q  *  L  Q  V  H  S  S  R  F  C  Q  S  *  G  *  R  S  F  R  G  Q  L  V  R  K  I  G  *  S  T  *  A  W  A  Y  L  K  V  *  *  *  *  R  S  W  V  P  I  K  G  H  A  S  *  Y  A  S  F  G  G  *  A  E  Q  K  S  E  *  R  Y  N  Y  L  Q  E  F  C  E  K  Q  L  S  L  G  C  I  M  Q  I  F  S  *  W  C  L  R  *  L  L  *  Q  G  H  S  E  Y  I  L  *  A  W  S  G  Q  S  S  N  Q  N  R  E  I  T  L  *  V  L  C  C  R  K  V  L  Q  G  *  L  *  I  L  S  R  C  H  I  K  K  S  *  N  *  A  L  G  *  H  W  *  A  S  T  S  N  G  I  L  S  S  I  Y  D  K  E  I  R  G  R  T  A  R  S  P  T  T  K  C  L  K  S  L  W  S  F  W  N  A  T  F  K  S  H  F  F  T  C  S  C  S  I  W  S  D  Q  S  *  D  E  G  S  R  *  L  S  S  S  R  W  L  R  A  E  Y  I  W  Q  L  *  V  A  P  G  Q  F  I  L  F  G  *  R  *  Y  *  G  S  H  G  P  S  E  S  N  I  Y  C  *  S  *  T  W  K  *  *  S  N  *  *  S  E  A  A  G  E  *  I  S  *  S  *  W  K  G  *  I  S  S  G  G  V  Q  G  C  A  R  K  *  S  S  R  N  Y  E  S  A  W  K  G  *  G  G  K  R  *  Q  R  *  K  G  D  A  I  I  Q  K  R  S  N  R  V  R  Q  G  D  P  K  T  H  L  E  R  R  *  D  E  Q  R  S  S  *  N  N  C  *  E  G  G  *  *  G  D  W  C  D  S  R  R  T  S  P  *  D  A  R  E  D  R  A  I  S  V  P  F  K  A  *  N  Y  Q  T  C  T   : G  I  C  G  A  T  S  E  E  *  S  L  R  C  R  T  P  L  L  F  W  K  I  Q  I  Q  *  G  L  D  F  P  T  C  T  G  R  F  S  Y  V  R  Y  L  C  L  L  K  S  H  I  L  I  V  *  *  I  W  F  S  K  L  F  S  V  I  P  T  I  Y  F  P  I  Y  H  V  *  A  L  Y  V  P  F  L  *  I  Q  S  H  G  S  C  A  D  F  S  V  S  L  R  F  L  V  E  S  I  V  V  L  T  S  L  *  F  Y  *  *  V  P  C  L  S  D  I </second_frame>
            <third_frame>   I  F  E  C  F  F  L  L  C  I  C  F  *  S  V  S  R  T  Q  T  K  S  *  F  F  G  I  F  S  Q  L  P  V  Y  P  Q  R  I  S  *  I  K  N  *  F  L  D  Y  V  L  L  I  L  *  N  G  N  L  I  F  S  F  P  I  R  M  F  V  F  L  K  L  E  N  L  K  K  E  T  P  E  W  R  K  F  S  W  C  T  T  *  S  Y  *  T  *  T  E  A  F  C  I  H  :  V  S  K  Y  A  S  *  K  N  I  N  I  A  D  I  F  Y  Q  G  P  L  W  V  K  M  Q  K  S  E  S  L  C  G  M  L  K  K  R  V  H  R  N  M  R  S  G  D  L  Q  N  L  K  I  H  G  S  P  K  V  D  Q  V  G  R  L  G  T  M  L  Q  E  L  K  I  *  G  R  I  T  I  I  T  R  A  C  L  Q  L  L  K  G  G  K  G  E  A  I  A  T  L  Q  I  M  V  G  P  S  L  T   : E  G  R  S  R  S  R  S  R  G  R  G  R  G  E  G  R  S  R  S  R  S  R  G  R  D  K  F  R  T  R  S  R  S  R  S  R  D  R  G  S  M  R  V  Q  N  R  S  R  S  P  H  N  T  K  R  D  P  Y  A  S  G  D  R  R  A  S  L  H  I  S  S  Q  V  C  R  N  F  A  A  G  N  C  R  R  G  S  D  C  R  F  I  H  L  D  S  A  S  H  R  D  E  G  H  S  E  D  N  L  S  E  R  L  G  S  R  P  E  R  G  H  I  S  R  Y  N  D  S  E  G  P  G  Y  Q  S  R  D  M  L  P  D  M  H  H  L  E  D  E  L  N  R  N  R  S  R  G  T  I  T  C  R  N  F  V  K  S  N  C  R  W  G  A  S  C  R  F  S  H  D  G  A  S  G  D  Y  Y  D  K  G  T  R  S  T  S  F  E  H  G  Q  D  N  Q  A  T  R  T  G  K  S  L  C  E  Y  F  A  A  G  K  C  Y  K  D  N  C  E  F  S  H  D  A  T  S  R  N  H  E  I  R  P  L  D  D  I  G  E  Q  V  H  Q  M  E  S  C  P  A  S  M  I  K  K  L  E  E  G  L  Q  E  A  Q  L  Q  S  V  L  N  P  S  G  P  S  G  M  L  P  S  N  P  I  S  S  L  V  H  A  L  Y  G  Q  T  N  P  E  M  R  V  L  D  N  Y  H  P  P  D  G  L  E  L  N  T  S  G  N  F  K  L  P  P  D  N  S  F  Y  L  D  R  D  S  I  K  V  P  M  D  Q  V  N  Q  T  S  T  V  D  P  E  L  G  N  N  D  Q  I  D  E  V  K  Q  Q  E  N  E  L  V  E  V  D  G  K  D  K  L  A  P  G  E  S  K  D  V  Q  E  N  D  H  P  G  T  M  N  L  H  G  K  V  E  E  G  S  G  N  K  D  E  K  V  M  R  L  F  K  N  A  L  I  E  F  V  K  E  I  L  K  P  I  W  K  E  G  K  M  S  R  E  V  H  K  T  I  V  K  K  V  V  D  K  V  T  G  A  I  Q  G  E  Q  V  P  K  T  Q  E  K  I  E  Q  Y  L  S  H  S  K  P  K  I  T  K  L  V  Q  :  A  Y  V  E  R  L  L  K  N  E  A  *  G  A  G  L  P  F  S  S  G  K  F  K  F  N  K  D  L  I  F  Q  H  V  L  E  G  L  V  M  L  D  I  F  V  C  *  N  H  I  S  S  *  C  D  R  F  G  L  A  S  C  F  L  L  F  R  P  F  I  F  R  F  T  M  F  E  H  Y  M  F  L  S  Y  R  F  N  H  M  V  V  V  L  I  S  Q  S  P  C  V  F  L  L  S  R  L  *  S  *  L  L  Y  D  F  I  S  E  Y  L  V  C  L  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63641" stop="63743"/>
                    <exon start="64167" stop="65626"/>
                    <exon start="65770" stop="65805"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1596</number_coding_nucleotides>
                  <number_encoded_amino_acids>532</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GRITIITRACLQLLKGGKGEAIATLQIMVGPSLTEGRSRSRSRGRGRGEGRSRSRSRGRDKFRTRSRSRSRDRGSMRVQNRSRSPHNTKRDPYASGDRRASLHISSQVCRNFAAGNCRRGSDCRFIHLDSASHRDEGHSEDNLSERLGSRPERGHISRYNDSEGPGYQSRDMLPDMHHLEDELNRNRSRGTITCRNFVKSNCRWGASCRFSHDGASGDYYDKGTRSTSFEHGQDNQATRTGKSLCEYFAAGKCYKDNCEFSHDATSRNHEIRPLDDIGEQVHQMESCPASMIKKLEEGLQEAQLQSVLNPSGPSGMLPSNPISSLVHALYGQTNPEMRVLDNYHPPDGLELNTSGNFKLPPDNSFYLDRDSIKVPMDQVNQTSTVDPELGNNDQIDEVKQQENELVEVDGKDKLAPGESKDVQENDHPGTMNLHGKVEEGSGNKDEKVMRLFKNALIEFVKEILKPIWKEGKMSREVHKTIVKKVVDKVTGAIQGEQVPKTQEKIEQYLSHSKPKITKLVQAYVERLLKNEA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49158" stop="49361"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFFPTLYLFLICFTDSNQILILWHFLTTSRLPPENQLNQELIFRLCSLDSLKWELDFQFSNSNVCLP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63437" stop="63640"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNINIADIFYQGPLWVKMQKSESLCGMLKKRVHRNMRSGDLQNLKIHGSPKVDQVGRLGTMLQELKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="51106" PGL_stop="50594"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51106" e_stop="50594"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="51106" e_stop="50594" e_length="513"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51106" stop="50594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284025" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTGCCACACAAAGTGGCATGCTTTACATGGCTACTAGCTAAGGAGGCAGTCTTGACATTGGATAATGTGGCCAAGAGAGGAATCTCTCTATGTAATAGATGTTCCTTGTGTGGGAAGGCTAATGAGACAGTGAGACATCTATTCTTACATTGCAACTTCACTGGGCAACTGTAGCAGACTTTCCTTAATCTCAGAGACATATCTTGGTGTCTGCCTAGCAAAATTGATGAGACTCTATTCGGTCGGGAGATGGCTGGAGTTAGGGCTACAAACAGAGAAAGATGGTGGACGATCCCTGCTAGTATTTGGTGGACTATATGGAGGGAGAGAAACGAGAGATGTTTTGAGAATAGGAACAACAACTTGTAGGAAGTAAGCTTAAGTGTATTTTGTTGTTCTGCTTTTGGTGTACAAATGTCTACTCCAATGAAACTGAGTCAATCATAGATGTTTTAGGATCCATTTAGATTTGGTTCAGTTTTTGGATAGATTATACTTACTTTCTGCTTT</gDNA_template>
            <first_frame> K  V  P  H  K  V  A  C  F  T  W  L  L  A  K  E  A  V  L  T  L  D  N  V  A  K  R  G  I  S  L  C  N  R  C  S  L  C  G  K  A  N  E  T  V  R  H  L  F  L  H  C  N  F  T  G  Q  L  *  Q  T  F  L  N  L  R  D  I  S  W  C  L  P  S  K  I  D  E  T  L  F  G  R  E  M  A  G  V  R  A  T  N  R  E  R  W  W  T  I  P  A  S  I  W  W  T  I  W  R  E  R  N  E  R  C  F  E  N  R  N  N  N  L  *  E  V  S  L  S  V  F  C  C  S  A  F  G  V  Q  M  S  T  P  M  K  L  S  Q  S  *  M  F  *  D  P  F  R  F  G  S  V  F  G  *  I  I  L  T  F  C  F </first_frame>
            <second_frame>  K  C  H  T  K  W  H  A  L  H  G  Y  *  L  R  R  Q  S  *  H  W  I  M  W  P  R  E  E  S  L  Y  V  I  D  V  P  C  V  G  R  L  M  R  Q  *  D  I  Y  S  Y  I  A  T  S  L  G  N  C  S  R  L  S  L  I  S  E  T  Y  L  G  V  C  L  A  K  L  M  R  L  Y  S  V  G  R  W  L  E  L  G  L  Q  T  E  K  D  G  G  R  S  L  L  V  F  G  G  L  Y  G  G  R  E  T  R  D  V  L  R  I  G  T  T  T  C  R  K  *  A  *  V  Y  F  V  V  L  L  L  V  Y  K  C  L  L  Q  *  N  *  V  N  H  R  C  F  R  I  H  L  D  L  V  Q  F  L  D  R  L  Y  L  L  S  A   </second_frame>
            <third_frame>   S  A  T  Q  S  G  M  L  Y  M  A  T  S  *  G  G  S  L  D  I  G  *  C  G  Q  E  R  N  L  S  M  *  *  M  F  L  V  W  E  G  *  *  D  S  E  T  S  I  L  T  L  Q  L  H  W  A  T  V  A  D  F  P  *  S  Q  R  H  I  L  V  S  A  *  Q  N  *  *  D  S  I  R  S  G  D  G  W  S  *  G  Y  K  Q  R  K  M  V  D  D  P  C  *  Y  L  V  D  Y  M  E  G  E  K  R  E  M  F  *  E  *  E  Q  Q  L  V  G  S  K  L  K  C  I  L  L  F  C  F  W  C  T  N  V  Y  S  N  E  T  E  S  I  I  D  V  L  G  S  I  *  I  W  F  S  F  W  I  D  Y  T  Y  F  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50970" stop="50728"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DIYSYIATSLGNCSRLSLISETYLGVCLAKLMRLYSVGRWLELGLQTEKDGGRSLLVFGGLYGGRETRDVLRIGTTTCRK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50929" stop="50735"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QTFLNLRDISWCLPSKIDETLFGREMAGVRATNRERWWTIPASIWWTIWRERNERCFENRNNNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="70392" PGL_stop="69933"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70392" e_stop="69933"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="70392" e_stop="69933" e_length="460"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70392" stop="69933"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATTGTAGATGACCAAATTTTTTCTTCGAATACGAAATTAAATTACTATACACACAAAAAAAATAGTTTAATTTTTAATTTTTTAAACTAAGAAATGAAAGAAAACAACAAAATAAGAATAAGAAATTCAAATAATTACAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATACCCCTTAATAATTTTTTTAAAAAAATTATAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGGTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGGTAAGGGCATATATGAGCTACTTTTATAACGAGGGTATATCAGCTCCAAATGATAAAGTTGAGGGGTATATCAGACCCTTTGATCTATTCCAAATAATATAATTG</gDNA_template>
            <first_frame> L  L  *  M  T  K  F  F  L  R  I  R  N  *  I  T  I  H  T  K  K  I  V  *  F  L  I  F  *  T  K  K  *  K  K  T  T  K  *  E  *  E  I  Q  I  I  T  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  P  L  N  N  F  F  K  K  I  I  S  N  K  Y  K  F  K  T  N  F  L  T  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  L  L  L  *  R  G  Y  I  S  S  K  *  *  S  *  G  V  Y  Q  T  L  *  S  I  P  N  N  I  I  </first_frame>
            <second_frame>  Y  C  R  *  P  N  F  F  F  E  Y  E  I  K  L  L  Y  T  Q  K  K  *  F  N  F  *  F  F  K  L  R  N  E  R  K  Q  Q  N  K  N  K  K  F  K  *  L  Q  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  L  I  I  F  L  K  K  L  *  V  I  N  I  N  L  K  L  I  F  *  L  P  L  N  E  G  Y  M  *  A  I  L  *  R  Q  G  Y  M  *  A  V  C  I  T  V  R  A  Y  M  S  Y  F  Y  N  E  G  I  S  A  P  N  D  K  V  E  G  Y  I  R  P  F  D  L  F  Q  I  I  *  L </second_frame>
            <third_frame>   I  V  D  D  Q  I  F  S  S  N  T  K  L  N  Y  Y  T  H  K  K  N  S  L  I  F  N  F  L  N  *  E  M  K  E  N  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  T  P  *  *  F  F  *  K  N  Y  K  *  *  I  *  I  *  N  *  F  F  N  F  R  *  M  K  G  I  C  E  P  F  C  N  G  R  G  I  C  E  P  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  V  Y  Q  L  Q  M  I  K  L  R  G  I  S  D  P  L  I  Y  S  K  *  Y  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0132O11.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="77349" PGL_stop="79601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77349" e_stop="77536"/>
            <exon e_start="77952" e_stop="79601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.960" acc_prob="0.376" e_score="0.989"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="77349" e_stop="77536" e_length="188"/>
          </exon>
          <intron i_serial="1" don_prob="0.960" acc_prob="0.376">
            <gDNA_intron_boundary i_start="77537" i_stop="77951" i_length="415"/>
          </intron>
          <exon e_serial="2" e_score="0.973">
            <gDNA_exon_boundary e_start="77952" e_stop="79601" e_length="1650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77349" stop="77536"/>
              <exon start="77952" stop="78465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77349" stop="77536"/>
              <exon start="77952" stop="78456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78234" stop="78740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E481735" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78506" stop="79115"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455065" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78638" stop="79460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E736849" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79169" stop="79601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711962" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGGTATCATCCAATACATGTGCTTCTGGTTACTGAGCATTTCCCAACCCCCAATCTGTTCACCTGTAAAGAGTTAGTTGTACGTGAAGGCAATGCATGGCTATATGAACCTAATTTGAACACTTTAAGAGAGAAGCTCCACCTCCCTGTTGGATCATGTGAACTTGCAGTTCCTCTCAAGGCTAAAG : CAAGTTGGCACTCTGGAAATGTAAGAAGAGAAGCCTATGCAACTATTCTCCACTCAGCTAATTTTTATGTATGTGGAGCCATAGCTGCAGCTCAGAGTATCCGCTTGGCAGGTTCAACCCGAGATCTTGTGATACTTGTTGATGAGTCTATCAGTGACTACCACAGGGGTGGTTTGGAGGCTGCTGGATGGAAGATCCACACGATAAAGAGAATAAGGAATCCTAAAGCTGAACAGGATGCCTACAATGAGTGGAACTATAGCAAATTTCGTCTTTGGCAGCTGACAGATTATGACAAAATCATCTTCATTGATGCAGATTTGTTAATATTGAGAAATATTGATTTTCTCTTTGAGATGCCTGAAATAACTGCAATAGGAAATAATGCAACCCTTTTTAATTCAGGTGTGATGGTCGTTGAACCATCAAATTGCACATTTCAGCTGTTGATGGATCATATTAATGAGATTGAATCGTACAATGGTGGGGATCAGGGGTATCTGAACGAAATCTTCACCTGGTGGCATAGGATCCCAAAACACATGAACTTTTTGAAACATTATTGGGAAGGTGATGAGGAGGAGAAAAAGCAAATGAAAACATCTCTTTTTGGTGCTGATCCTCCAGTTCTTTATGTCCTGCACTACTTAGGCCTGAAACCTTGGTTATGCTTCAGGGACTACGATTGCAACTGGAATGTGGGTAAGTTGCAGGAGTTTGCAAGTGATGTGGCACACAGGACGTGGTGGAAGGTCCATGATGCCATGCCAGATAACTTACATAAATATTGTTTGCTTAGGTCTAAACAGAAGGCTGCATTAGAGTGGGATCGAAGAGAAGCTGAGAAAGCTAACTATTCAGATGGTCATTGGAAGATCAAAATAAAAGACCCACGTTTGGAAACTTGTTTTGAAGAATTTTGCTTCTGGGAAAGCATGTTATGGCACTGGGGGGAAACAAACTGGACAGATAATGCCACCTCTTCACCAACACCTCCCATGGTCAATACTGCTTCACTTTCTTCTTTGTAACTAGGAGGTTCTGTTGCTATACCTCGCTCGTCTGTAAGTAATACGGAGTCACAACTTGAATGTCAACCAATGGCCATTAGTACGCATGGTGTTCGCACTTGCCCTACCCTTGAATATAGTCCACTCTGCAGCTGTGTTGCTTCAATTGCTTCTCATCTTTTCTTGTTTCCTATACGACTGTTTTCTCTTGTCCTCAAGAGATGTTCTTTTCTTAATTGTCCTTTTACTTAAGTTATAAGGGGAGCATTGGAGCAAACAATTAAGTTGTCTCCGTATGGATTCGTTCTGTGGGAACACCCCTTGATGCTTGAGTCAGGGTAGGCAGACTACATTAAACCCCTTGGAATGTGGCCCTTCCTCAGACCATGCGTGAACATGTGATGTTTCGCGCACCTGGTTGTCCTTTTTCTTTATAATAGTGGTAAAGGTATTGTATTGAAGTTCAGCAAAATGCTGCAACGAGGAGTCACTGTCTCATTGAGAAATCTGTTTGTTTTGAGGCACCATATTACTGTTGTAGTGAGTGTACAAACGAAGCAGACTTACACTATTTATGTATGTTGTTGATTGTAGAAACCCAATTTTTCATCAAAGGAGGTTTGGATGAATCACTTGAATG</gDNA_template>
            <first_frame> R  V  S  S  N  T  C  A  S  G  Y  *  A  F  P  N  P  Q  S  V  H  L  *  R  V  S  C  T  *  R  Q  C  M  A  I  *  T  *  F  E  H  F  K  R  E  A  P  P  P  C  W  I  M  *  T  C  S  S  S  Q  G  *  S :   K  L  A  L  W  K  C  K  K  R  S  L  C  N  Y  S  P  L  S  *  F  L  C  M  W  S  H  S  C  S  S  E  Y  P  L  G  R  F  N  P  R  S  C  D  T  C  *  *  V  Y  Q  *  L  P  Q  G  W  F  G  G  C  W  M  E  D  P  H  D  K  E  N  K  E  S  *  S  *  T  G  C  L  Q  *  V  E  L  *  Q  I  S  S  L  A  A  D  R  L  *  Q  N  H  L  H  *  C  R  F  V  N  I  E  K  Y  *  F  S  L  *  D  A  *  N  N  C  N  R  K  *  C  N  P  F  *  F  R  C  D  G  R  *  T  I  K  L  H  I  S  A  V  D  G  S  Y  *  *  D  *  I  V  Q  W  W  G  S  G  V  S  E  R  N  L  H  L  V  A  *  D  P  K  T  H  E  L  F  E  T  L  L  G  R  *  *  G  G  E  K  A  N  E  N  I  S  F  W  C  *  S  S  S  S  L  C  P  A  L  L  R  P  E  T  L  V  M  L  Q  G  L  R  L  Q  L  E  C  G  *  V  A  G  V  C  K  *  C  G  T  Q  D  V  V  E  G  P  *  C  H  A  R  *  L  T  *  I  L  F  A  *  V  *  T  E  G  C  I  R  V  G  S  K  R  S  *  E  S  *  L  F  R  W  S  L  E  D  Q  N  K  R  P  T  F  G  N  L  F  *  R  I  L  L  L  G  K  H  V  M  A  L  G  G  N  K  L  D  R  *  C  H  L  F  T  N  T  S  H  G  Q  Y  C  F  T  F  F  F  V  T  R  R  F  C  C  Y  T  S  L  V  C  K  *  Y  G  V  T  T  *  M  S  T  N  G  H  *  Y  A  W  C  S  H  L  P  Y  P  *  I  *  S  T  L  Q  L  C  C  F  N  C  F  S  S  F  L  V  S  Y  T  T  V  F  S  C  P  Q  E  M  F  F  S  *  L  S  F  Y  L  S  Y  K  G  S  I  G  A  N  N  *  V  V  S  V  W  I  R  S  V  G  T  P  L  D  A  *  V  R  V  G  R  L  H  *  T  P  W  N  V  A  L  P  Q  T  M  R  E  H  V  M  F  R  A  P  G  C  P  F  S  L  *  *  W  *  R  Y  C  I  E  V  Q  Q  N  A  A  T  R  S  H  C  L  I  E  K  S  V  C  F  E  A  P  Y  Y  C  C  S  E  C  T  N  E  A  D  L  H  Y  L  C  M  L  L  I  V  E  T  Q  F  F  I  K  G  G  L  D  E  S  L  E   </first_frame>
            <second_frame>  G  Y  H  P  I  H  V  L  L  V  T  E  H  F  P  T  P  N  L  F  T  C  K  E  L  V  V  R  E  G  N  A  W  L  Y  E  P  N  L  N  T  L  R  E  K  L  H  L  P  V  G  S  C  E  L  A  V  P  L  K  A  K   : A  S  W  H  S  G  N  V  R  R  E  A  Y  A  T  I  L  H  S  A  N  F  Y  V  C  G  A  I  A  A  A  Q  S  I  R  L  A  G  S  T  R  D  L  V  I  L  V  D  E  S  I  S  D  Y  H  R  G  G  L  E  A  A  G  W  K  I  H  T  I  K  R  I  R  N  P  K  A  E  Q  D  A  Y  N  E  W  N  Y  S  K  F  R  L  W  Q  L  T  D  Y  D  K  I  I  F  I  D  A  D  L  L  I  L  R  N  I  D  F  L  F  E  M  P  E  I  T  A  I  G  N  N  A  T  L  F  N  S  G  V  M  V  V  E  P  S  N  C  T  F  Q  L  L  M  D  H  I  N  E  I  E  S  Y  N  G  G  D  Q  G  Y  L  N  E  I  F  T  W  W  H  R  I  P  K  H  M  N  F  L  K  H  Y  W  E  G  D  E  E  E  K  K  Q  M  K  T  S  L  F  G  A  D  P  P  V  L  Y  V  L  H  Y  L  G  L  K  P  W  L  C  F  R  D  Y  D  C  N  W  N  V  G  K  L  Q  E  F  A  S  D  V  A  H  R  T  W  W  K  V  H  D  A  M  P  D  N  L  H  K  Y  C  L  L  R  S  K  Q  K  A  A  L  E  W  D  R  R  E  A  E  K  A  N  Y  S  D  G  H  W  K  I  K  I  K  D  P  R  L  E  T  C  F  E  E  F  C  F  W  E  S  M  L  W  H  W  G  E  T  N  W  T  D  N  A  T  S  S  P  T  P  P  M  V  N  T  A  S  L  S  S  L  *  L  G  G  S  V  A  I  P  R  S  S  V  S  N  T  E  S  Q  L  E  C  Q  P  M  A  I  S  T  H  G  V  R  T  C  P  T  L  E  Y  S  P  L  C  S  C  V  A  S  I  A  S  H  L  F  L  F  P  I  R  L  F  S  L  V  L  K  R  C  S  F  L  N  C  P  F  T  *  V  I  R  G  A  L  E  Q  T  I  K  L  S  P  Y  G  F  V  L  W  E  H  P  L  M  L  E  S  G  *  A  D  Y  I  K  P  L  G  M  W  P  F  L  R  P  C  V  N  M  *  C  F  A  H  L  V  V  L  F  L  Y  N  S  G  K  G  I  V  L  K  F  S  K  M  L  Q  R  G  V  T  V  S  L  R  N  L  F  V  L  R  H  H  I  T  V  V  V  S  V  Q  T  K  Q  T  Y  T  I  Y  V  C  C  *  L  *  K  P  N  F  S  S  K  E  V  W  M  N  H  L  N  </second_frame>
            <third_frame>   G  I  I  Q  Y  M  C  F  W  L  L  S  I  S  Q  P  P  I  C  S  P  V  K  S  *  L  Y  V  K  A  M  H  G  Y  M  N  L  I  *  T  L  *  E  R  S  S  T  S  L  L  D  H  V  N  L  Q  F  L  S  R  L  K  :  Q  V  G  T  L  E  M  *  E  E  K  P  M  Q  L  F  S  T  Q  L  I  F  M  Y  V  E  P  *  L  Q  L  R  V  S  A  W  Q  V  Q  P  E  I  L  *  Y  L  L  M  S  L  S  V  T  T  T  G  V  V  W  R  L  L  D  G  R  S  T  R  *  R  E  *  G  I  L  K  L  N  R  M  P  T  M  S  G  T  I  A  N  F  V  F  G  S  *  Q  I  M  T  K  S  S  S  L  M  Q  I  C  *  Y  *  E  I  L  I  F  S  L  R  C  L  K  *  L  Q  *  E  I  M  Q  P  F  L  I  Q  V  *  W  S  L  N  H  Q  I  A  H  F  S  C  *  W  I  I  L  M  R  L  N  R  T  M  V  G  I  R  G  I  *  T  K  S  S  P  G  G  I  G  S  Q  N  T  *  T  F  *  N  I  I  G  K  V  M  R  R  R  K  S  K  *  K  H  L  F  L  V  L  I  L  Q  F  F  M  S  C  T  T  *  A  *  N  L  G  Y  A  S  G  T  T  I  A  T  G  M  W  V  S  C  R  S  L  Q  V  M  W  H  T  G  R  G  G  R  S  M  M  P  C  Q  I  T  Y  I  N  I  V  C  L  G  L  N  R  R  L  H  *  S  G  I  E  E  K  L  R  K  L  T  I  Q  M  V  I  G  R  S  K  *  K  T  H  V  W  K  L  V  L  K  N  F  A  S  G  K  A  C  Y  G  T  G  G  K  Q  T  G  Q  I  M  P  P  L  H  Q  H  L  P  W  S  I  L  L  H  F  L  L  C  N  *  E  V  L  L  L  Y  L  A  R  L  *  V  I  R  S  H  N  L  N  V  N  Q  W  P  L  V  R  M  V  F  A  L  A  L  P  L  N  I  V  H  S  A  A  V  L  L  Q  L  L  L  I  F  S  C  F  L  Y  D  C  F  L  L  S  S  R  D  V  L  F  L  I  V  L  L  L  K  L  *  G  E  H  W  S  K  Q  L  S  C  L  R  M  D  S  F  C  G  N  T  P  *  C  L  S  Q  G  R  Q  T  T  L  N  P  L  E  C  G  P  S  S  D  H  A  *  T  C  D  V  S  R  T  W  L  S  F  F  F  I  I  V  V  K  V  L  Y  *  S  S  A  K  C  C  N  E  E  S  L  S  H  *  E  I  C  L  F  *  G  T  I  L  L  L  *  *  V  Y  K  R  S  R  L  T  L  F  M  Y  V  V  D  C  R  N  P  I  F  H  Q  R  R  F  G  *  I  T  *  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77350" stop="77536"/>
                    <exon start="77952" stop="78982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1215</number_coding_nucleotides>
                  <number_encoded_amino_acids>405</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GYHPIHVLLVTEHFPTPNLFTCKELVVREGNAWLYEPNLNTLREKLHLPVGSCELAVPLKAKASWHSGNVRREAYATILHSANFYVCGAIAAAQSIRLAGSTRDLVILVDESISDYHRGGLEAAGWKIHTIKRIRNPKAEQDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEITAIGNNATLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHYWEGDEEEKKQMKTSLFGADPPVLYVLHYLGLKPWLCFRDYDCNWNVGKLQEFASDVAHRTWWKVHDAMPDNLHKYCLLRSKQKAALEWDRREAEKANYSDGHWKIKIKDPRLETCFEEFCFWESMLWHWGETNWTDNATSSPTPPMVNTASLSSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78983" stop="79213"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LGGSVAIPRSSVSNTESQLECQPMAISTHGVRTCPTLEYSPLCSCVASIASHLFLFPIRLFSLVLKRCSFLNCPFT*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79408" stop="79599"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYCIEVQQNAATRSHCLIEKSVCFEAPYYCCSECTNEADLHYLCMLLIVETQFFIKGGLDESLE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="92117" PGL_stop="92618"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92117" e_stop="92618"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="92117" e_stop="92618" e_length="502"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92117" stop="92618"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577845" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCCTTTATTTGAATTAAAACTTGATAGAAAAACATCTTCCAAGGCTACCCAGATGCTCGACGAGGTCTGGATGGAGTCGAGGTCCAGTTGCTGACGCTGATCTTTGCCTCCTTGCTTCCACTAGGGCCCCCTTTCTCCTCCTCGTTGATCACGACGTTGCAAACTTTCCCCTCTTCTTTGGTTAGCGATGACCCCTTCAAGTCGTCTGAGATCTCATCAATATTGTCTTCCATGAAACCTGCTGATCGAAATGATTGATACAATGGCGGTATGGGTTTCTTCAATGGGTAGTAGAACCCATCTCTAGGTGGTCGCCAATCGAGCCATTCTTCGGTGGTGTATTTATAACCCAAACCAAAAGTGGTGGAATGTCGAACAGGCTGTATAGGTTCGACTATCCCTTGTAATTCAGCCCCCAAACCTTTCCCAAGCTCGAAACCGAACCAGGCCATCATATCTATGATTTTTTGGCTGAACCAAGGTTGCAACTCAATATTACC</gDNA_template>
            <first_frame> T  P  L  F  E  L  K  L  D  R  K  T  S  S  K  A  T  Q  M  L  D  E  V  W  M  E  S  R  S  S  C  *  R  *  S  L  P  P  C  F  H  *  G  P  L  S  P  P  R  *  S  R  R  C  K  L  S  P  L  L  W  L  A  M  T  P  S  S  R  L  R  S  H  Q  Y  C  L  P  *  N  L  L  I  E  M  I  D  T  M  A  V  W  V  S  S  M  G  S  R  T  H  L  *  V  V  A  N  R  A  I  L  R  W  C  I  Y  N  P  N  Q  K  W  W  N  V  E  Q  A  V  *  V  R  L  S  L  V  I  Q  P  P  N  L  S  Q  A  R  N  R  T  R  P  S  Y  L  *  F  F  G  *  T  K  V  A  T  Q  Y  Y  </first_frame>
            <second_frame>  L  L  Y  L  N  *  N  L  I  E  K  H  L  P  R  L  P  R  C  S  T  R  S  G  W  S  R  G  P  V  A  D  A  D  L  C  L  L  A  S  T  R  A  P  F  L  L  L  V  D  H  D  V  A  N  F  P  L  F  F  G  *  R  *  P  L  Q  V  V  *  D  L  I  N  I  V  F  H  E  T  C  *  S  K  *  L  I  Q  W  R  Y  G  F  L  Q  W  V  V  E  P  I  S  R  W  S  P  I  E  P  F  F  G  G  V  F  I  T  Q  T  K  S  G  G  M  S  N  R  L  Y  R  F  D  Y  P  L  *  F  S  P  Q  T  F  P  K  L  E  T  E  P  G  H  H  I  Y  D  F  L  A  E  P  R  L  Q  L  N  I  T </second_frame>
            <third_frame>   S  F  I  *  I  K  T  *  *  K  N  I  F  Q  G  Y  P  D  A  R  R  G  L  D  G  V  E  V  Q  L  L  T  L  I  F  A  S  L  L  P  L  G  P  P  F  S  S  S  L  I  T  T  L  Q  T  F  P  S  S  L  V  S  D  D  P  F  K  S  S  E  I  S  S  I  L  S  S  M  K  P  A  D  R  N  D  *  Y  N  G  G  M  G  F  F  N  G  *  *  N  P  S  L  G  G  R  Q  S  S  H  S  S  V  V  Y  L  *  P  K  P  K  V  V  E  C  R  T  G  C  I  G  S  T  I  P  C  N  S  A  P  K  P  F  P  S  S  K  P  N  Q  A  I  I  S  M  I  F  W  L  N  Q  G  C  N  S  I  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92146" stop="92376"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KNIFQGYPDARRGLDGVEVQLLTLIFASLLPLGPPFSSSLITTLQTFPSSLVSDDPFKSSEISSILSSMKPADRND*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="112334" PGL_stop="113976"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112334" e_stop="112887"/>
            <exon e_start="113538" e_stop="113645"/>
            <exon e_start="113745" e_stop="113837"/>
            <exon e_start="113949" e_stop="113976"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.990"/>
          <exon-intron don_prob="0.887" acc_prob="0.948" e_score="0.991"/>
          <exon-intron don_prob="0.665" acc_prob="0.996" e_score="0.957"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="112334" e_stop="112887" e_length="554"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="112888" i_stop="113537" i_length="650"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="113538" e_stop="113645" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.887" acc_prob="0.948">
            <gDNA_intron_boundary i_start="113646" i_stop="113744" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="113745" e_stop="113837" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.665" acc_prob="0.996">
            <gDNA_intron_boundary i_start="113838" i_stop="113948" i_length="111"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="113949" e_stop="113976" e_length="28"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112334" stop="112836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112350" stop="112808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325196" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112358" stop="112737"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313640" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112364" stop="112887"/>
              <exon start="113538" stop="113645"/>
              <exon start="113745" stop="113756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112366" stop="112887"/>
              <exon start="113538" stop="113645"/>
              <exon start="113745" stop="113837"/>
              <exon start="113949" stop="113976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112366" stop="112832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112368" stop="112713"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473007" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112369" stop="112887"/>
              <exon start="113538" stop="113598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484366" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112370" stop="112887"/>
              <exon start="113538" stop="113645"/>
              <exon start="113745" stop="113781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112399" stop="112832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362511" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAATGCTGCCACAGCCTTTTTAACCTCATCATAACACCACCGCACAACTCACCAACCCCAAGAACCAAATACCTGCATACTCTCATTCTATCCTACTTCTTACCTATTTAGTTTTCTTGTTAATAATTATCTATATATAGTAAAAAATAGCTTTCTGTTTATAAAGTTTCCGGAATTCACGTGCTTTTCTTATCCCCTTTTCCTCTTTTTCTTATAAAGATTTGATTTTATTTTTAATAACAGAGGATGTGAATGAGCCTAATTTTTGAAGTGTTTTAGAGAAAAAGAGGGTAAAGATTGAATCTTTATGAGGTTTAGTGAGATGGGTGTGTGGTGGTTTTGTGGATTGGTCATTTTGGGTTTGGTAATTGGAGGAAAAGGGTATCCAGAGAAGGATTTAGTGAAGGCATTGCCTGGACAACCTAAGGTTGGTTTTAGGCAATATGCAGGGTATGTAGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCTGAGGTGAAACCTGATGAGAAACCTCTAACTCTTTGGCTCAATGGAG : GGCCAGGTTGCTCATCAATTGGTGGAGGTGCTTTTACAGAGTTGGGACCATTCTTTCCCACAGGTGACGGTAGAGGTCTTCGAAGAAATTCAAAATCATGGAATAAAG : CATCAAATCTCCTCTTTGTTGAATCTCCAGCTGGAGTAGGATGGTCGTACTCAAATACAAGTTCAGACTATACCACTGGTGATGCAAAGACCG : CAATGGATATGCACATGTTCATGATGGA</gDNA_template>
            <first_frame> Q  C  C  H  S  L  F  N  L  I  I  T  P  P  H  N  S  P  T  P  R  T  K  Y  L  H  T  L  I  L  S  Y  F  L  P  I  *  F  S  C  *  *  L  S  I  Y  S  K  K  *  L  S  V  Y  K  V  S  G  I  H  V  L  F  L  S  P  F  P  L  F  L  I  K  I  *  F  Y  F  *  *  Q  R  M  *  M  S  L  I  F  E  V  F  *  R  K  R  G  *  R  L  N  L  Y  E  V  *  *  D  G  C  V  V  V  L  W  I  G  H  F  G  F  G  N  W  R  K  R  V  S  R  E  G  F  S  E  G  I  A  W  T  T  *  G  W  F  *  A  I  C  R  V  C  R  C  G  C  E  S  W  E  E  F  V  L  L  L  C  *  S  *  G  E  T  *  *  E  T  S  N  S  L  A  Q  W  R :   A  R  L  L  I  N  W  W  R  C  F  Y  R  V  G  T  I  L  S  H  R  *  R  *  R  S  S  K  K  F  K  I  M  E  *  S :   I  K  S  P  L  C  *  I  S  S  W  S  R  M  V  V  L  K  Y  K  F  R  L  Y  H  W  *  C  K  D  R :   N  G  Y  A  H  V  H  D  G </first_frame>
            <second_frame>  N  A  A  T  A  F  L  T  S  S  *  H  H  R  T  T  H  Q  P  Q  E  P  N  T  C  I  L  S  F  Y  P  T  S  Y  L  F  S  F  L  V  N  N  Y  L  Y  I  V  K  N  S  F  L  F  I  K  F  P  E  F  T  C  F  S  Y  P  L  F  L  F  F  L  *  R  F  D  F  I  F  N  N  R  G  C  E  *  A  *  F  L  K  C  F  R  E  K  E  G  K  D  *  I  F  M  R  F  S  E  M  G  V  W  W  F  C  G  L  V  I  L  G  L  V  I  G  G  K  G  Y  P  E  K  D  L  V  K  A  L  P  G  Q  P  K  V  G  F  R  Q  Y  A  G  Y  V  D  V  D  V  K  A  G  R  S  L  F  Y  Y  F  V  E  A  E  V  K  P  D  E  K  P  L  T  L  W  L  N  G   : G  P  G  C  S  S  I  G  G  G  A  F  T  E  L  G  P  F  F  P  T  G  D  G  R  G  L  R  R  N  S  K  S  W  N  K   : A  S  N  L  L  F  V  E  S  P  A  G  V  G  W  S  Y  S  N  T  S  S  D  Y  T  T  G  D  A  K  T   : A  M  D  M  H  M  F  M  M   </second_frame>
            <third_frame>   M  L  P  Q  P  F  *  P  H  H  N  T  T  A  Q  L  T  N  P  K  N  Q  I  P  A  Y  S  H  S  I  L  L  L  T  Y  L  V  F  L  L  I  I  I  Y  I  *  *  K  I  A  F  C  L  *  S  F  R  N  S  R  A  F  L  I  P  F  S  S  F  S  Y  K  D  L  I  L  F  L  I  T  E  D  V  N  E  P  N  F  *  S  V  L  E  K  K  R  V  K  I  E  S  L  *  G  L  V  R  W  V  C  G  G  F  V  D  W  S  F  W  V  W  *  L  E  E  K  G  I  Q  R  R  I  *  *  R  H  C  L  D  N  L  R  L  V  L  G  N  M  Q  G  M  *  M  W  M  *  K  L  G  G  V  C  F  T  T  L  L  K  L  R  *  N  L  M  R  N  L  *  L  F  G  S  M  E  :  G  Q  V  A  H  Q  L  V  E  V  L  L  Q  S  W  D  H  S  F  P  Q  V  T  V  E  V  F  E  E  I  Q  N  H  G  I  K  :  H  Q  I  S  S  L  L  N  L  Q  L  E  *  D  G  R  T  Q  I  Q  V  Q  T  I  P  L  V  M  Q  R  P  :  Q  W  I  C  T  C  S  *  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112635" stop="112887"/>
                    <exon start="113538" stop="113645"/>
                    <exon start="113745" stop="113837"/>
                    <exon start="113949" stop="113974"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFMRFSEMGVWWFCGLVILGLVIGGKGYPEKDLVKALPGQPKVGFRQYAGYVDVDVKAGRSLFYYFVEAEVKPDEKPLTLWLNGGPGCSSIGGGAFTELGPFFPTGDGRGLRRNSKSWNKASNLLFVESPAGVGWSYSNTSSDYTTGDAKTAMDMHMFMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="114743" PGL_stop="116389"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114743" e_stop="114769"/>
            <exon e_start="114887" e_stop="115165"/>
            <exon e_start="115248" e_stop="115381"/>
            <exon e_start="115582" e_stop="115674"/>
            <exon e_start="115772" e_stop="115889"/>
            <exon e_start="115988" e_stop="116389"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.633" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.904" acc_prob="0.999" e_score="0.978"/>
          <exon-intron don_prob="0.955" acc_prob="0.856" e_score="0.989"/>
          <exon-intron don_prob="0.966" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114743" e_stop="114769" e_length="27"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.998">
            <gDNA_intron_boundary i_start="114770" i_stop="114886" i_length="117"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="114887" e_stop="115165" e_length="279"/>
          </exon>
          <intron i_serial="2" don_prob="0.633" acc_prob="0.998">
            <gDNA_intron_boundary i_start="115166" i_stop="115247" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="115248" e_stop="115381" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.904" acc_prob="0.999">
            <gDNA_intron_boundary i_start="115382" i_stop="115581" i_length="200"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="115582" e_stop="115674" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.955" acc_prob="0.856">
            <gDNA_intron_boundary i_start="115675" i_stop="115771" i_length="97"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="115772" e_stop="115889" e_length="118"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.997">
            <gDNA_intron_boundary i_start="115890" i_stop="115987" i_length="98"/>
          </intron>
          <exon e_serial="6" e_score="0.980">
            <gDNA_exon_boundary e_start="115988" e_stop="116389" e_length="402"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114743" stop="114769"/>
              <exon start="114887" stop="115165"/>
              <exon start="115248" stop="115322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114743" stop="114769"/>
              <exon start="114887" stop="115165"/>
              <exon start="115248" stop="115316"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E470400" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115003" stop="115165"/>
              <exon start="115248" stop="115381"/>
              <exon start="115582" stop="115674"/>
              <exon start="115772" stop="115889"/>
              <exon start="115988" stop="116154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115097" stop="115165"/>
              <exon start="115248" stop="115363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115154" stop="115165"/>
              <exon start="115248" stop="115381"/>
              <exon start="115582" stop="115674"/>
              <exon start="115772" stop="115889"/>
              <exon start="115988" stop="116389"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555324" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115320" stop="115381"/>
              <exon start="115582" stop="115674"/>
              <exon start="115772" stop="115889"/>
              <exon start="115988" stop="116307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E610830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACAAGTTCAACATTAAAGGAGTTGCA : ATTGGGAATCCACTTCTGAGACTTGATCGTGATGTTCCCGCAACCTATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAGTAGGCCTAACAATTATGAATCAGTGTGACTTTGACGATTATACCTTTGGCAGTCCACACAATGTTTCACAAGCATGCAATAATGCCATATCTGAAGCAAATACCATTGTTGGTGAATATATAAATAACTATGATGTGATCCTTGATGTGTGCTATCCGTCTATAGTGGAACAAGAGCTGCGATTAAAGAAAATG : GCTACTAAAATTAGTGTAGGTGTTGATGTGTGCATGAGCTATGAAAGGCGTTTCTATTTTAACCTTCCGGAGGTTCAGAAAGCCCTTCATGCAAATAGGACGAACTTGCCTTATACCTGGTCGATGTGCAGCAA : TGTTCTCAAGTACAGCGACACAGATGGAAACATCAATATTCTTCCGTTGCTCAAAAGAATAATCGAAAAACATATTCCTGTTTGGATTTTCAG : CGGAGACCAAGATTCTGTTGTGCCATTGCTTGGATCCAGGACCCTTGTACGCGAGCTAGCTCATGACATGGGGTTCAAGATTACAGTCCCTTATGGAGCTTGGTTTCACAAAGGACAG : GTAGGAGGATGGCAAACGGAGTATGGCAATCTGTTGACCTTTGCCACTGTTAGAGGTGCTGCACATATGGTACCATATGCACAACCCGCAAGAGCTTTGCATCTGTTTAGTTCATTTATACGTGGCCGGAGGCTCCCAAACAACACACGTCCCTCCATCGACGACTAGGAAAAAGCCTCTCCAATGAGCACTTTAAAGTTGGTTATAGGTATAGTTACTTGAGTGAGGATGAATATTAGGGACTTCCTATATAAACAGGAAGAAACAAAACCATTGCATTGATAATTGGCTTTGAAGTAGCTGAAGAAGATTTCCTAGATTGACAGTGTGATAGAGATAGGGGAACATATCTTTATCTTAAATTAAATTTCTTTGAATGAAATAAAGAAAGCAAGTTCATTC</gDNA_template>
            <first_frame> Y  K  F  N  I  K  G  V  A  :  I  G  N  P  L  L  R  L  D  R  D  V  P  A  T  Y  E  Y  F  W  S  H  G  M  I  S  D  E  V  G  L  T  I  M  N  Q  C  D  F  D  D  Y  T  F  G  S  P  H  N  V  S  Q  A  C  N  N  A  I  S  E  A  N  T  I  V  G  E  Y  I  N  N  Y  D  V  I  L  D  V  C  Y  P  S  I  V  E  Q  E  L  R  L  K  K  M  :  A  T  K  I  S  V  G  V  D  V  C  M  S  Y  E  R  R  F  Y  F  N  L  P  E  V  Q  K  A  L  H  A  N  R  T  N  L  P  Y  T  W  S  M  C  S  N :   V  L  K  Y  S  D  T  D  G  N  I  N  I  L  P  L  L  K  R  I  I  E  K  H  I  P  V  W  I  F  S :   G  D  Q  D  S  V  V  P  L  L  G  S  R  T  L  V  R  E  L  A  H  D  M  G  F  K  I  T  V  P  Y  G  A  W  F  H  K  G  Q  :  V  G  G  W  Q  T  E  Y  G  N  L  L  T  F  A  T  V  R  G  A  A  H  M  V  P  Y  A  Q  P  A  R  A  L  H  L  F  S  S  F  I  R  G  R  R  L  P  N  N  T  R  P  S  I  D  D  *  E  K  A  S  P  M  S  T  L  K  L  V  I  G  I  V  T  *  V  R  M  N  I  R  D  F  L  Y  K  Q  E  E  T  K  P  L  H  *  *  L  A  L  K  *  L  K  K  I  S  *  I  D  S  V  I  E  I  G  E  H  I  F  I  L  N  *  I  S  L  N  E  I  K  K  A  S  S  F </first_frame>
            <second_frame>  T  S  S  T  L  K  E  L  Q :   L  G  I  H  F  *  D  L  I  V  M  F  P  Q  P  M  N  T  F  G  L  M  E  *  F  L  M  K  *  A  *  Q  L  *  I  S  V  T  L  T  I  I  P  L  A  V  H  T  M  F  H  K  H  A  I  M  P  Y  L  K  Q  I  P  L  L  V  N  I  *  I  T  M  M  *  S  L  M  C  A  I  R  L  *  W  N  K  S  C  D  *  R  K  W :   L  L  K  L  V  *  V  L  M  C  A  *  A  M  K  G  V  S  I  L  T  F  R  R  F  R  K  P  F  M  Q  I  G  R  T  C  L  I  P  G  R  C  A  A   : M  F  S  S  T  A  T  Q  M  E  T  S  I  F  F  R  C  S  K  E  *  S  K  N  I  F  L  F  G  F  S   : A  E  T  K  I  L  L  C  H  C  L  D  P  G  P  L  Y  A  S  *  L  M  T  W  G  S  R  L  Q  S  L  M  E  L  G  F  T  K  D  R :   *  E  D  G  K  R  S  M  A  I  C  *  P  L  P  L  L  E  V  L  H  I  W  Y  H  M  H  N  P  Q  E  L  C  I  C  L  V  H  L  Y  V  A  G  G  S  Q  T  T  H  V  P  P  S  T  T  R  K  K  P  L  Q  *  A  L  *  S  W  L  *  V  *  L  L  E  *  G  *  I  L  G  T  S  Y  I  N  R  K  K  Q  N  H  C  I  D  N  W  L  *  S  S  *  R  R  F  P  R  L  T  V  *  *  R  *  G  N  I  S  L  S  *  I  K  F  L  *  M  K  *  R  K  Q  V  H   </second_frame>
            <third_frame>   Q  V  Q  H  *  R  S  C   : N  W  E  S  T  S  E  T  *  S  *  C  S  R  N  L  *  I  L  L  V  S  W  N  D  F  *  *  S  R  P  N  N  Y  E  S  V  *  L  *  R  L  Y  L  W  Q  S  T  Q  C  F  T  S  M  Q  *  C  H  I  *  S  K  Y  H  C  W  *  I  Y  K  *  L  *  C  D  P  *  C  V  L  S  V  Y  S  G  T  R  A  A  I  K  E  N   : G  Y  *  N  *  C  R  C  *  C  V  H  E  L  *  K  A  F  L  F  *  P  S  G  G  S  E  S  P  S  C  K  *  D  E  L  A  L  Y  L  V  D  V  Q  Q  :  C  S  Q  V  Q  R  H  R  W  K  H  Q  Y  S  S  V  A  Q  K  N  N  R  K  T  Y  S  C  L  D  F  Q  :  R  R  P  R  F  C  C  A  I  A  W  I  Q  D  P  C  T  R  A  S  S  *  H  G  V  Q  D  Y  S  P  L  W  S  L  V  S  Q  R  T   : G  R  R  M  A  N  G  V  W  Q  S  V  D  L  C  H  C  *  R  C  C  T  Y  G  T  I  C  T  T  R  K  S  F  A  S  V  *  F  I  Y  T  W  P  E  A  P  K  Q  H  T  S  L  H  R  R  L  G  K  S  L  S  N  E  H  F  K  V  G  Y  R  Y  S  Y  L  S  E  D  E  Y  *  G  L  P  I  *  T  G  R  N  K  T  I  A  L  I  I  G  F  E  V  A  E  E  D  F  L  D  *  Q  C  D  R  D  R  G  T  Y  L  Y  L  K  L  N  F  F  E  *  N  K  E  S  K  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0132O11.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114743" stop="114769"/>
                    <exon start="114887" stop="115165"/>
                    <exon start="115248" stop="115381"/>
                    <exon start="115582" stop="115674"/>
                    <exon start="115772" stop="115889"/>
                    <exon start="115988" stop="116155"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKFNIKGVAIGNPLLRLDRDVPATYEYFWSHGMISDEVGLTIMNQCDFDDYTFGSPHNVSQACNNAISEANTIVGEYINNYDVILDVCYPSIVEQELRLKKMATKISVGVDVCMSYERRFYFNLPEVQKALHANRTNLPYTWSMCSNVLKYSDTDGNINILPLLKRIIEKHIPVWIFSGDQDSVVPLLGSRTLVRELAHDMGFKITVPYGAWFHKGQVGGWQTEYGNLLTFATVRGAAHMVPYAQPARALHLFSSFIRGRRLPNNTRPSIDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 154 chains have been computed
$ 
$ memory statistics:
$ 168488 bytes spliced alignments in total
$ 77 spliced alignments have been stored
$ 2188 bytes was the average size of a spliced alignment
$ 18616 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1861 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 174 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:26:41
-->
