<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 17:36:58"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4642-3" ref_strand="+" ref_description="SGN-M4642-3 C2_At5g27620-3 [cosii_markers]">
      <seq>tgtaccgtgcttattaaatttcctccatcacaaagccttaagcccttccggtatattgacccgctgctggtctctccggcgatcgtttcaccggcgaaaaatctgcggagtgtttctacggcgaaaaatctgcgatcttctaagagatgaaacgctgggccatggcatagtttattggaagatcacatccaaacgaaaattagaattggcagagagaagacatggctgatttcgtgacatctactcataaaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactagagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcgtatgctgaaagtcaaaatgacgcaaaagatagtgctgaaaagcgtcctaaaccactcaaagttgaagaagaacaacttctaagggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccgcgtaagattcaggcaacagctctcatttattttaagaggttttatctacaatggtccgtgatggaacatcaccctaaagacattatgttaacgtgcatatatgcagcttgcaaggcagaggaaaatcatgtatcagctgaggagcttggtaaggggattggacaggatcatcatgtaatcctcaataatgagatgctggtttttcagagtctaggatttgatctgattgcttatgctccatatcgtgcacttgaaggttttatcagtgatttagaggtctttttctgttgatctgttacaccttccccattgagagttctgtggagctcaagatgatgaccagcttgtggcactgaagggtgcacttgatactgctaggattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18181" stop="13425"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17884" g_stop="17779" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17337" i_length="442">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.161" a_score="0.55"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17336" g_stop="17167" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="281" r_length="174" r_score="0.818"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="0.96"/>
            <acceptor a_prob="0.952" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="332" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.795" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="411" r_length="79" r_score="0.949"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="0.92"/>
            <acceptor a_prob="0.884" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="524" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="0.98"/>
            <acceptor a_prob="0.439" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="598" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.892" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15051" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="719" r_length="121" r_score="0.950"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.991" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="14960" g_stop="14854" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="720" r_stop="825" r_length="106" r_score="0.907"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="14853" i_stop="14747" i_length="107">
            <donor d_prob="0.000" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="0.91"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="14746" g_stop="14702" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="870" r_length="45" r_score="0.911"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951">
            <donor d_prob="0.969" d_score="0.91"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="13750" g_stop="13725" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="871" r_stop="896" r_length="26" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-M4642-3" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>892</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4642-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17884" e_stop="17779"/>
          <exon e_start="17336" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15051"/>
          <exon e_start="14960" e_stop="14854"/>
          <exon e_start="14746" e_stop="14702"/>
          <exon e_start="13750" e_stop="13725"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGTGCTTATTAAA-TTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATAC--ATTATTTTTGAAGATCTTAT-AGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGA-ATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAGGCATGGATTTTATTTGAAGGTCATGTCATTCAACATTTTCCTTTAAATATCTTTGCTTTAATCAACTTTTTTCTAACCTTTATTTTGCAGAGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGAGTAATAATTGCTGTGTTGACATCTTCCTTATAATTGGTAGCATTTCCACTCCTTGTACTACTTGATTTCTTCATTGCAATTATTGACTATTGCTCTTGAAATTGTAGGAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAGGTAGTCACTAAATTTTTTTCGACAGGTTAAGTGTTCAAGTGAAAAGTTCTCTCCGCTTACCTTGCGGTTGAGAAATCAAGTTACAAATGGAGTAAATGGAAGAAAAGGACCACAATTGACTCCTGGGAGGGGGTTGAGTTACTGGTTAATAGTGGGGTAGATGTAGGTTAAAATATAAAAACAATTTCTTATTTCCTTCCATGCAAATTGCCTCTTGCAGGGTAGGCTGCATATATTAGACTCTTGTGGTCCGACCCAGCCCTTCCCCTGCTCTCGCACATAGCGAGCTTTATTGCACCGGGCTGTCTTTTTCTTCAATCTTCTTTATTAAATAAAATGTTCTTGCACTATTTCTGCTCCTTGTAAATCTGGCTTCTGACAATTGAATTTTATCCAATGTTGTTCAACAACTAGTAGTTTTGCAGTTAAACCACCCAAACCATGTGAATCTATATGCAATATTGAAAATCTTCAGTTCTCCATCCAATGGAACAAATGCTGATTTCACTCTTCCCATTTCTATTGTTTGTCGTTCTTCCTTAGATAATCAAGGTTAATGCATCTTCTTGCTATATTATCATCAATCTTCAAACATAATAAAAGTTGGTGGCATGTTGGAGATATGATGATTATTATCATTCAATGTATTCTTAGAATTTCACATCGTAGATCTCTATGTAGCTCATTGAGCTACCCACCAACTAATCTTTCTTTTATACTTCAATTTATTTGTTCAAAACATTTCTGTGTATGCAACATGCGACAAGAAGAAGGAATAGACTTCCCTCATAAGTAGTCGGTAACATTCTGACATGCATCAATGCATTACTAATTGTAATTCATCTACTGTAGATAATGAATTAATTTTGTTTTCCATTGGTGATTTCAATTTATATTACTCTGACCTTTGTATTCATCTACCAGCTAAGTTTATTTTCTTCTGATGTACAGGGTTCACTTGATACTGCTAGGATTGA</genome_strand>
        <mrna_strand>TGTACCGTGCTTATTAAATTTCCTCCATCACAAAGCCTTAAGCCCTTCCGGTATATTGACCCGCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTTTCTACGGCGAAAAATCTGCGATCTTCTAAGAGATGAAACGCTGGGCCATGGCATAGTTTATTGGAAGATCACATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTCGTGACATCTACTCATAAAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTAGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCGTATGCTGAAAGTCAAAATGACGCAAAAGATAGTG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAAGTTGAAGAAGAACAACTTCTAAGGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCGCGTAAGATTCAG..............................................................................GCAACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCTAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACGTGCATATATGCAGCTTGCAAGGCAGAGGAAAATCATGTATCAGCTGAGGAGCTTGGTAAGGGGATTGGACAGGATCATCATGTAATCCTCAATAATGAGATGCTGGTTTTTCAG..........................................................................................AGTCTAGGATTTGATCTGATTGCTTATGCTCCATATCGTGCACTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACCT-TCCCCATTGA...........................................................................................................GAGTTCTGTGGAGCTCAAGATGATGACCAGCTTGTGGCACTGAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCACTTGATACTGCTAGGATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4642-2" ref_strand="+" ref_description="SGN-M4642-2 C2_At5g27620-2 [cosii_markers]">
      <seq>tgcttattaaattcttccattacaaagccttaagcccttccggtatattaaccctctgctggtctctccggcgatcgtttcaccggcgaaaaatctgcggggcatggcatagtttaaaaggaatcgcatccaaacgaaaattagaattggcagagagaagacatggctgattttgtgacatctactcatagaaccaagtggatttttactccccaagatattaaacataagtataaagttgctaatcacagagcgaaacaagcactggagaagtatggaacaacgcgaatggaagttgatattgatgggtcgttctcatatgctgaaagccaaaatgacgccaaagataatgctgaaaagcgtcctaaaccactcaaggttgaagaagaacaacttctaaaggctttctacgagttcaaaattcaagacgtctgtgatgcctttaagttcccacgtaagattcaggcgacagctctcatttattttaagagggtttatctacnatggtccgtgatggaacatcaccccaaagacattatgttaacctgcatatatgcagcttgcaaggcagaggaaaaccatgtatcagctgagggacttgggaaggggattggacaggatcatcatgtaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="18177" stop="14776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17877" g_stop="17779" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17778" i_stop="17290" i_length="489">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17289" g_stop="17167" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="222" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106">
            <donor d_prob="0.593" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="17060" g_stop="17010" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="273" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.795" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15887" g_stop="15809" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="352" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.884" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="15677" g_stop="15565" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="465" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.439" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="15486" g_stop="15413" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="539" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241">
            <donor d_prob="0.995" d_score="0.96"/>
            <acceptor a_prob="0.892" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="15171" g_stop="15076" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="635" r_length="96" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-M4642-2" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M4642-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17877" e_stop="17779"/>
          <exon e_start="17289" e_stop="17167"/>
          <exon e_start="17060" e_stop="17010"/>
          <exon e_start="15887" e_stop="15809"/>
          <exon e_start="15677" e_stop="15565"/>
          <exon e_start="15486" e_stop="15413"/>
          <exon e_start="15171" e_stop="15076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCGGTAAGTTCTCCGATTAACTGGAATTTTTCTGTATTTGTTTCCTAAAATTAAGCACATATCCAATTTGTTGTCTTATGGGTCTGTACTTTCTTGTCGCCTTCGTGAGGTGGAAGTTTAATTTGGTCTTAAAATTAGATACTACTCCATAAAAAGCTGAAAATACAGCTATTTTCCTGTGCTATTAGCAAGGGAAATGCGTGAGATATTTTTTTTGGGTTGTAATACTTGTCAATAATACTAATTTGGCTGTTTGAAGAATATCTTTCTGCCTTAGCTTTTACTCTGATGCTTTTCTGTATATCTACTATTATGTTTTTTCAATTTTCTGATACAATTATATATATATACATTGAAATCTATGATCTTATTTTAAAATTTTAGTGACTAGGTTAAATTTAATTGTTTCAATCGATTTGAAAATTATTCTGACACCACTATCTAGGAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATTGTGAGTTACAATTGTTCATCAAAAATCTTGGAGAAAATCATTTTCTTTTCGTCTTCCCATTTTTATTTGAATTTTTGGGTTTACGAATGGTATACTGTATGCACAGAAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAGGTATTGTAGCTCATTTTCTTAACATTTTTTGTTTAATTAGCTTTTTGCATTTTCTGTGGGATTGTGGATATGTTTTCTTTTGTCGAGATACCCTTTTCACCTTATTAGTTATTGTTTTGATGAAGGCAATATTGTGTTCTTTGACCTTTTGCTGTTGTAGTTAGTGTTTATCTTTAAGACGTGGTTCAAGCACGTTTATTGAGATGTCCAAAACACATGGTTTGCATTCTGTAACTTGCTTTATGAATAACAAATGTGCTATAGACATGAAACGATAAGTTAAGTAAATAGAATGAACCTGAGTTCCGATGCTGGTAGCTAGGGGTGTTATTTGGTAAGCTTGATCTTATTGATATTATTCGTAACAATGAAATCATAGAAGCTTCAGAGCTTAAGAACACAAAGAAAGAGTATAATGTTAGTAAAATGCGTAAAAGCCGATGGTTTACAACGAGTAGATATAAGACTTTATAGCTAACCTTAGAGAGCAACTTGCATGGTTCTCACCCTCATAAAGTTCACTAATTGTACATTTACTTCAGTTACATAATGGCTGACGGAGATCTTGGGCTCTTTCCCCATCGACTAACGTAGATTGAACCGGCTCTTTCCACAACAGCTGGTAGAGATCTCGGACTCTTCGGCAACACAACAGCTGGACCCCTAAACTTATTTTGACCTTATCTTGTTGGGTCCACAACCTGGTGCCCAGTCCCGTACTTTCGGAACTAGATGGCTTTGCTGATATGACTCTGGCTCCACTATCTCGACTCCGGATTTTTCATTGATAGGATTACATTTACCGGTCACGTTCTGAGGATAGCATTTGGTGTTGTCCCTGCCGAGTCACTTTTGACCTACTCTTCTTTCCACGTGTCGATTCTTACCCCACAGAGTTAGATAGAGTAGAATTTCTTTTCCATTTTATGTGTTTGGTGTATGAAATTCTGTATGCCGGCCTTATGTTTTTTTCAAACAATTTTGTTACCTTTCTCTACGCTTCAACAATTTGCCTGATTTTATAGGCAGCATTACCTGAAACTCTTATGGCCCAGAACATAGGTCTGATTTGTAGTCTTTGTGGATGTACGAATAATACTGATAGCTAATTCTGTTGTGAAGTATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATGGTAAGATTGTAGTTTTTCAGACCAAAGTTAAACTAGAGAAACTATGAAGTTTCTGGTTTGCTTCCTTCAATCTTTTAAGATAATCATAATTGTTATCATTCTTTTGATTGCTATTTTGGTTGGCATGTTAGCTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAGGTATAAAGTTTTAATTATTGGATCTGCCACTATGATGGATCAACGAGAAGGTGAAACAGTTCTCATGCTTGTTTGCAGGCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTATGTAAGCTTCTTATTATCCTCTCTGTGCTTTCTTATTTTAAAAAAACTTACTAGTTTCCCCCTATCTTTATGCATTGTTTGGTTGGTCATTGGACAATAGTTACTTTTTTTTCCAAATTCAAGTTGAAATGCATTTTAAAAACATAAACAAAGTCATCTGGATTCCACATATATGATGCATACAGTAGTTGATAGTTGACAGAGACATAGCTTACTAGCTCCCCCTCCCCCTCTTTTTGTAGGTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCT</genome_strand>
        <mrna_strand>TGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT..........................................................................................................AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG...................................................................................................................................CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG..............................................................................GCGACAGCTCTCATTTATTTTAAGAGGGTTTATCTACNATGGTCCGTGATGGAACATCACCCCAAAGACATTAT.................................................................................................................................................................................................................................................GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGGACTTGGGAAGGGGATTGGACAGGATCATCATGTAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1982" ref_strand="+" ref_description="SGN-M1982 T1405 [cos_markers]">
      <seq>caacaccaacaactagcccttgaagctgcaagaaatggcattgtcttgctcaagaataccggcaagttgctgcctctttccaaggcgaaaaccaactcccttgctgtcattggtcataatgccaacaatgcttatattctccgtgggaactatgacggtcctccttgcaaatacatcgaaatactcaaggcgttggttggttatgcaaagtcagttcagtaccaacagggttgcaatgcggctaactgcacgtctgctaacattgatcaagctgtcaacattgcaagaaatgcagattatgttgttttagtcatggggttggatcaaactcaagagagggaacaatttgatcgcgatgacttagtgctcccggggcagcaagaaaatcttatcaatagtgttgctaaagatgcaaagaagcctgttatattggtgattctctcaggaggtccagttgatatttctttcgcgaaatataaccctaaaataggaagcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="39725" stop="40824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40025" g_stop="40524" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-M1982" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40025" e_stop="40524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTT</genome_strand>
        <mrna_strand>CAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAGGCGAAAACCAACTCCCTTGCTGTCATTGGTCATAATGCCAACAATGCTTATATTCTCCGTGGGAACTATGACGGTCCTCCTTGCAAATACATCGAAATACTCAAGGCGTTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAGTCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGATGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M205-F" ref_strand="+" ref_description="SGN-M205-F CT185-F [rflp_markers_forward]">
      <seq>cttttttttttttgtgaagactttccccctggctcggacagaggttgataacacagctggtttagcagctgatttcgtgttcagaatattgtttgacaaaagaattgttgtcaatgaagaaaatggttggttatgtcagaaaggaagacatcctggttgattatggtggtactgttggaagttttaaccaggtaatgggactttgagcatgggagctcagttgtgttttgttgttcttttgctgacacattataatggtaaatgtttgaaataaatgatgttactatatgcttgctttggttggtatgagaaggaaaaagcttcttctcagcaaatgatcttctgaatatacagcccttcggctggaaaatggcgaccctttatgattgcttctatgttgatgatatataccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="61384" stop="62392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61682" g_stop="62093" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="413" r_length="413" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-M205-F" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M205-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61682" e_stop="62093"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTTTTTTTTTGTGAAGACTTTGCTCCTGGCTCGGACAGAGGTTGATAACACAGCTGGTTTAGCAGCTGATTTCGTGTTCAGAATATTGTTTGACAAAAGAATTGTTGTCAATGAAGAAAATGGTTGGTTATGTCAGAAAGGAAGAGATCCTGGTTGATTATGGTGGTACTGTTGGAAGTTTTAACCAGTTAATGGGACTTTGAGCATGGGAGCTCAGTTGTG-CCTGAAGTTCTTTTGCTGACACATTATAATGGTAAATGTTTGGAATAAATGATGTTAGTATATGCTTGCTTTGGTTGGTATGAGAAGGAAAAGGCTTCATCTCAGCAAATGATCTTTTGAATATACAGCCATTCGGCTGGAAAATGGCAACCCTTTATGATTGCTTCTATGTTGATGATATATACCA</genome_strand>
        <mrna_strand>CTTTTTTTTTTTTGTGAAGACTTTCCCCCTGGCTCGGACAGAGGTTGATAACACAGCTGGTTTAGCAGCTGATTTCGTGTTCAGAATATTGTTTGACAAAAGAATTGTTGTCAATGAAGAAAATGGTTGGTTATGTCAGAAAGGAAGACATCCTGGTTGATTATGGTGGTACTGTTGGAAGTTTTAACCAGGTAATGGGACTTTGAGCATGGGAGCTCAGTTGTGTTTTGTTGTTCTTTTGCTGACACATTATAATGGTAAATGTTTGAAATAAATGATGTTACTATATGCTTGCTTTGGTTGGTATGAGAAGGAAAAAGCTTCTTCTCAGCAAATGATCTTCTGAATATACAGCCCTTCGGCTGGAAAATGGCGACCCTTTATGATTGCTTCTATGTTGATGATATATACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M372-R" ref_strand="+" ref_description="SGN-M372-R TG633-R [rflp_markers_reverse]">
      <seq>agggagacagcttgcatgcctgcagctgtctacaataattgaaaacaaaagctaagtaattatggtgactttcttctacaagttcaatgataaaggagaatatataaattttttcatgaagaaagatggaattctctagacacaaatcacaaacttcttacttcaaaaaagcaaatcttaaatcaatcagaacaagttttgcaacatagattccgtcaatagccttggtctttcttacatacatgggtccaagttgaatacaaatacgtggaaaggtgtctcattttcctaggcccttatttcaggtgtggggacagagcggaaacttgtatgttattaagaactagcatataaagtacaaaggccattcaatatgagcacttaactgttctttcggtcttttctttagatatcagcttcagatgaagctagaaaccctaattttattcagctcttctatctcccttcatctttggcaaagctccctaataatttaaaaagatagtgaaatcttccttagtctcctcctctcaattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="108675" stop="109793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108976" g_stop="109493" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="537" r_length="517" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-M372-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M372-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108976" e_stop="109493"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTGTCTAACAATAATTGAAAACAAAAGCTAAGTAATTATGGTGACTTTCTTCTACAAGTTCAATGATAAAGGAGAATATATAAATTTTTTCATGAAGAAAGATGGAATTCTCTAGACACAAATCACAAACTTCTTACTTCAAAAAAGCAAATCTTAAATCAATCAGAACAAGTTTTGCAACATAGATTCCGTCAATAGCCTTGGTCTTTCTTACATACATGGGTCCAAGTTGAATACAAATACGTGGAAAGGTGTCTCATTTTCCTAGGCCCTTATTTCAGGTGTGGGGACAGAGCGGAAACTTGTATGTTATTAAGAACTAGCATATAAAGTACAAAGGCCATTCAATATGAGCACTTAACTGTTCTTTCGGTCTTTTCTTTAGATATCAGCTTCAGATGAAGCTAGAAACCCTAATTTTATTCAGCTCTTCTATCTCCCTTCATCTTTGGCAAAGCTCCCTAATAATTTAAAAAGATAGTGAAATCTTCCTTAGTCTCCTCCTCTCAATTC</genome_strand>
        <mrna_strand>TGCAGCTGTCT-ACAATAATTGAAAACAAAAGCTAAGTAATTATGGTGACTTTCTTCTACAAGTTCAATGATAAAGGAGAATATATAAATTTTTTCATGAAGAAAGATGGAATTCTCTAGACACAAATCACAAACTTCTTACTTCAAAAAAGCAAATCTTAAATCAATCAGAACAAGTTTTGCAACATAGATTCCGTCAATAGCCTTGGTCTTTCTTACATACATGGGTCCAAGTTGAATACAAATACGTGGAAAGGTGTCTCATTTTCCTAGGCCCTTATTTCAGGTGTGGGGACAGAGCGGAAACTTGTATGTTATTAAGAACTAGCATATAAAGTACAAAGGCCATTCAATATGAGCACTTAACTGTTCTTTCGGTCTTTTCTTTAGATATCAGCTTCAGATGAAGCTAGAAACCCTAATTTTATTCAGCTCTTCTATCTCCCTTCATCTTTGGCAAAGCTCCCTAATAATTTAAAAAGATAGTGAAATCTTCCTTAGTCTCCTCCTCTCAATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M372-F" ref_strand="+" ref_description="SGN-M372-F TG633-F [rflp_markers_forward]">
      <seq>ggagacagcttgcatgcctgcagctgtctaacaataattgaaacaaaagctaagtaattatggtgactttcttctacaagttcaatgataaaggagaatatataaattttttcatgaagaaagatggaattctctagacacaaatcacaaacttcttacttcaaaaaagcaaatcttaaatcaatcagaacaagttttgcaacatagattccgtcaatagccttggtctttcttacatacatgggtccaagttgaatacaaatacgtggaaaggtgtctcattttcctaggcccttatttcaggtgtggggacagagcggaaacttgtatgttattaagaactagcatataaagtacaaaggccattcaatatgagcacttaactgttctttcggtcttttctttagatatcagcttcagatgaagctagaaaccctaattttattcagctcttctatctcccttcatctttggcaaagctccctaataatttaaaaagatagtgaaatcttccttagtctcctcctctcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="108675" stop="109790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108976" g_stop="109490" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="532" r_length="514" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-M372-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M372-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108976" e_stop="109490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTGTCTAACAATAATTGAAAACAAAAGCTAAGTAATTATGGTGACTTTCTTCTACAAGTTCAATGATAAAGGAGAATATATAAATTTTTTCATGAAGAAAGATGGAATTCTCTAGACACAAATCACAAACTTCTTACTTCAAAAAAGCAAATCTTAAATCAATCAGAACAAGTTTTGCAACATAGATTCCGTCAATAGCCTTGGTCTTTCTTACATACATGGGTCCAAGTTGAATACAAATACGTGGAAAGGTGTCTCATTTTCCTAGGCCCTTATTTCAGGTGTGGGGACAGAGCGGAAACTTGTATGTTATTAAGAACTAGCATATAAAGTACAAAGGCCATTCAATATGAGCACTTAACTGTTCTTTCGGTCTTTTCTTTAGATATCAGCTTCAGATGAAGCTAGAAACCCTAATTTTATTCAGCTCTTCTATCTCCCTTCATCTTTGGCAAAGCTCCCTAATAATTTAAAAAGATAGTGAAATCTTCCTTAGTCTCCTCCTCTCAA</genome_strand>
        <mrna_strand>TGCAGCTGTCTAACAATAATTG-AAACAAAAGCTAAGTAATTATGGTGACTTTCTTCTACAAGTTCAATGATAAAGGAGAATATATAAATTTTTTCATGAAGAAAGATGGAATTCTCTAGACACAAATCACAAACTTCTTACTTCAAAAAAGCAAATCTTAAATCAATCAGAACAAGTTTTGCAACATAGATTCCGTCAATAGCCTTGGTCTTTCTTACATACATGGGTCCAAGTTGAATACAAATACGTGGAAAGGTGTCTCATTTTCCTAGGCCCTTATTTCAGGTGTGGGGACAGAGCGGAAACTTGTATGTTATTAAGAACTAGCATATAAAGTACAAAGGCCATTCAATATGAGCACTTAACTGTTCTTTCGGTCTTTTCTTTAGATATCAGCTTCAGATGAAGCTAGAAACCCTAATTTTATTCAGCTCTTCTATCTCCCTTCATCTTTGGCAAAGCTCCCTAATAATTTAAAAAGATAGTGAAATCTTCCTTAGTCTCCTCCTCTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M275-R" ref_strand="+" ref_description="SGN-M275-R TG519-R [rflp_markers_reverse]">
      <seq>ggagacagcttgcatgcctgcagctgtctaacaataattgaaaacaaaagctaagtaattatggtgactttcttctacaagttcaatgataaaggagaatatataaattttttcatgaagaaagatggaattctctagacacaaatcacaaacttcttacttcaaaaaagcaaatcttaaatcaatcagaacaagttttgcaacatagattccgtcaatagccttggtctttcttacatacatgggtccaagttgaatacaaatacgtggaaaggtgtctcattttcctaggcccttatttcaggtgtggggacagagcggaaacttgtatgttattaagaactagcatataaagtacaaaggccattcaatatgagcacttaactgttctttcggtcttttctttagatatcagcttcagatgaagctagaaaccctaattttattcagctcttctatctcccttcatctttggcaaagctccctaataatttaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="+" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="108675" stop="109758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108976" g_stop="109458" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="501" r_length="483" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="+" ref_id="SGN-M275-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M275-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108976" e_stop="109458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTGTCTAACAATAATTGAAAACAAAAGCTAAGTAATTATGGTGACTTTCTTCTACAAGTTCAATGATAAAGGAGAATATATAAATTTTTTCATGAAGAAAGATGGAATTCTCTAGACACAAATCACAAACTTCTTACTTCAAAAAAGCAAATCTTAAATCAATCAGAACAAGTTTTGCAACATAGATTCCGTCAATAGCCTTGGTCTTTCTTACATACATGGGTCCAAGTTGAATACAAATACGTGGAAAGGTGTCTCATTTTCCTAGGCCCTTATTTCAGGTGTGGGGACAGAGCGGAAACTTGTATGTTATTAAGAACTAGCATATAAAGTACAAAGGCCATTCAATATGAGCACTTAACTGTTCTTTCGGTCTTTTCTTTAGATATCAGCTTCAGATGAAGCTAGAAACCCTAATTTTATTCAGCTCTTCTATCTCCCTTCATCTTTGGCAAAGCTCCCTAATAATTTAAAAAGA</genome_strand>
        <mrna_strand>TGCAGCTGTCTAACAATAATTGAAAACAAAAGCTAAGTAATTATGGTGACTTTCTTCTACAAGTTCAATGATAAAGGAGAATATATAAATTTTTTCATGAAGAAAGATGGAATTCTCTAGACACAAATCACAAACTTCTTACTTCAAAAAAGCAAATCTTAAATCAATCAGAACAAGTTTTGCAACATAGATTCCGTCAATAGCCTTGGTCTTTCTTACATACATGGGTCCAAGTTGAATACAAATACGTGGAAAGGTGTCTCATTTTCCTAGGCCCTTATTTCAGGTGTGGGGACAGAGCGGAAACTTGTATGTTATTAAGAACTAGCATATAAAGTACAAAGGCCATTCAATATGAGCACTTAACTGTTCTTTCGGTCTTTTCTTTAGATATCAGCTTCAGATGAAGCTAGAAACCCTAATTTTATTCAGCTCTTCTATCTCCCTTCATCTTTGGCAAAGCTCCCTAATAATTTAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M275-F" ref_strand="+" ref_description="SGN-M275-F TG519-F [rflp_markers_forward]">
      <seq>aatcagggagactgatgatattgtggaaaaaattggtaagacctttttatttgccaagtttatatcatttcgaatattgactggagcctgctgctgaaattttggtcattgaacagataaaatatttaatgaaccagattattactattattatataataaattcctttttcattgagaagatttacccttgaaagacaatttatcatttctgatacagagtctgatggctcaatacttcttatgcatttaagtgtatttctgtcatttctacatttgttttctcatctaactcgtggcatttagcttatatttggatcagaaacattacttcatttttagagtttgctcatgattgtgtctccaaagaattgcatatgtttaatgtgtatgcactttcagagctatcattgatcttgcatcaacatttcttttgtttaatctccggttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0138I19-YTiFa/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0138I19.1" temp_strand="-" temp_description="C04HBa0138I19.1  CU915744.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0138I19 sequenced_by:sanger upload_account_name:uk">
        <position start="111123" stop="110071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="110823" g_stop="110371" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="453" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0138I19.1" gen_strand="-" ref_id="SGN-M275-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0138I19.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M275-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="110823" e_stop="110371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGGGAGACTGATGATATTGTGGAAAAAATTGGTAAGACCTTTTTATTTGCCAAGTTTATATCATTTCGAATATTGACTGGAGCCTGCTGCTGAAATTTTGGTCATTGAACAGATAAAATATTTAATGAACCAGATTATTACTATTATTATATAATAAATTCCTTTTTCATTGAGAAGATTTACCCTTGAAAGACAATTTATCATTTCTGATACAGAGTCTGATGGCTCAATACTTCTTATGCATTTAAGTGTATTTCTGTCATTTCTACATTTGTTTTCTCATCTAACTCGTGGCATTTAGCTTATATTTGGATCAGAAACATTACTTCATTTTTAGAGTTTGCTCATGATTGTGTCTCCAAAGAATTGCATATGTTTAATGTGTATGCACTTTCAGAGCTATCATTGATCTTGCATCAACATTTCTTTTGTTTAATCTCCGGTTGGAG</genome_strand>
        <mrna_strand>AATCAGGGAGACTGATGATATTGTGGAAAAAATTGGTAAGACCTTTTTATTTGCCAAGTTTATATCATTTCGAATATTGACTGGAGCCTGCTGCTGAAATTTTGGTCATTGAACAGATAAAATATTTAATGAACCAGATTATTACTATTATTATATAATAAATTCCTTTTTCATTGAGAAGATTTACCCTTGAAAGACAATTTATCATTTCTGATACAGAGTCTGATGGCTCAATACTTCTTATGCATTTAAGTGTATTTCTGTCATTTCTACATTTGTTTTCTCATCTAACTCGTGGCATTTAGCTTATATTTGGATCAGAAACATTACTTCATTTTTAGAGTTTGCTCATGATTGTGTCTCCAAAGAATTGCATATGTTTAATGTGTATGCACTTTCAGAGCTATCATTGATCTTGCATCAACATTTCTTTTGTTTAATCTCCGGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="17884" PGL_stop="13725"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17884" e_stop="17779"/>
            <exon e_start="17336" e_stop="17167"/>
            <exon e_start="17060" e_stop="17010"/>
            <exon e_start="15887" e_stop="15809"/>
            <exon e_start="15677" e_stop="15565"/>
            <exon e_start="15486" e_stop="15413"/>
            <exon e_start="15171" e_stop="15051"/>
            <exon e_start="14960" e_stop="14854"/>
            <exon e_start="14746" e_stop="14702"/>
            <exon e_start="13750" e_stop="13725"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.161" e_score="0.915"/>
          <exon-intron don_prob="0.593" acc_prob="0.952" e_score="0.818"/>
          <exon-intron don_prob="0.999" acc_prob="0.795" e_score="0.980"/>
          <exon-intron don_prob="0.974" acc_prob="0.884" e_score="0.949"/>
          <exon-intron don_prob="0.778" acc_prob="0.439" e_score="0.973"/>
          <exon-intron don_prob="0.995" acc_prob="0.892" e_score="0.973"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="0.950"/>
          <exon-intron don_prob="0.000" acc_prob="1.000" e_score="0.907"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="0.911"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="17884" e_stop="17779" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.161">
            <gDNA_intron_boundary i_start="17778" i_stop="17337" i_length="442"/>
          </intron>
          <exon e_serial="2" e_score="0.818">
            <gDNA_exon_boundary e_start="17336" e_stop="17167" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.952">
            <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="17060" e_stop="17010" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.795">
            <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="0.949">
            <gDNA_exon_boundary e_start="15887" e_stop="15809" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.884">
            <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="0.973">
            <gDNA_exon_boundary e_start="15677" e_stop="15565" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.778" acc_prob="0.439">
            <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="15486" e_stop="15413" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.892">
            <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="0.950">
            <gDNA_exon_boundary e_start="15171" e_stop="15051" e_length="121"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="15050" i_stop="14961" i_length="90"/>
          </intron>
          <exon e_serial="8" e_score="0.907">
            <gDNA_exon_boundary e_start="14960" e_stop="14854" e_length="107"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="14853" i_stop="14747" i_length="107"/>
          </intron>
          <exon e_serial="9" e_score="0.911">
            <gDNA_exon_boundary e_start="14746" e_stop="14702" e_length="45"/>
          </exon>
          <intron i_serial="9" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14701" i_stop="13751" i_length="951"/>
          </intron>
          <exon e_serial="10" e_score="0.962">
            <gDNA_exon_boundary e_start="13750" e_stop="13725" e_length="26"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17884" stop="17779"/>
              <exon start="17336" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15051"/>
              <exon start="14960" stop="14854"/>
              <exon start="14746" stop="14702"/>
              <exon start="13750" stop="13725"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4642-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACTGTGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG : GAGTTTTTATACATTATTTTTGAAGATCTTATAGAGATGAAACACAGGGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT : AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG : TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG : CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG : GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTAT : GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCTCAACAATGAGATGCTGGTTTTCCAG : AGTCTAGGATTTGATCTAATTGTTTACTCTCCATATCGTGCTCTTGAAGGTTTTATCAGTGATTTAGAGGTCTTTTTCTGTTGATCTGTTACACTTAAACCCTTTGA : GAATTCTGTGGAGCTAAAGATGAAGACCAGCTTGTGGCTCTGAAG : GGTTCACTTGATACTGCTAGGATTGA</gDNA_template>
            <first_frame> F  T  V  L  I  K  F  F  H  Y  K  A  L  S  P  S  G  I  L  T  L  C  W  S  L  R  R  S  F  H  R  R  K  I  C   : G  V  F  I  H  Y  F  *  R  S  Y  R  D  E  T  Q  G  H  G  I  V  *  K  E  S  H  P  N  E  N  *  N  W  Q  R  E  D  M  A  D  F  V  T  S  T  H  R  T  K  W  I  F  T  P  Q  D  I  :  K  H  K  Y  K  V  A  N  H  R  A  K  Q  A  L  E  K  :  Y  G  T  T  R  M  E  V  D  I  D  G  S  F  S  Y  A  E  S  Q  N  D  A  K  D  N   : A  E  K  R  P  K  P  L  K  V  E  E  E  Q  L  L  K  A  F  Y  E  F  K  I  Q  D  V  C  D  A  F  K  F  P  R  K  I  Q  :  A  T  A  L  I  Y  F  K  R  F  Y  L  Q  W  S  V  M  E  H  H  P  K  D  I  M :   L  T  C  I  Y  A  A  C  K  A  E  E  N  H  V  S  A  E  E  L  G  K  G  I  G  Q  D  H  H  V  I  L  N  N  E  M  L  V  F  Q  :  S  L  G  F  D  L  I  V  Y  S  P  Y  R  A  L  E  G  F  I  S  D  L  E  V  F  F  C  *  S  V  T  L  K  P  F  E :   N  S  V  E  L  K  M  K  T  S  L  W  L  *  R :   V  H  L  I  L  L  G  L  </first_frame>
            <second_frame>  S  L  C  L  L  N  S  S  I  T  K  P  *  A  L  P  V  Y  *  P  S  A  G  L  S  G  D  R  F  T  G  E  K  S  A  :  E  F  L  Y  I  I  F  E  D  L  I  E  M  K  H  R  G  M  A  *  F  K  R  N  R  I  Q  T  K  I  R  I  G  R  E  K  T  W  L  I  L  *  H  L  L  I  E  P  S  G  F  L  L  P  K  I  L :   N  I  S  I  K  L  L  I  T  E  R  N  K  H  W  R  S :   M  E  Q  R  E  W  K  L  I  L  M  G  R  S  H  M  L  K  A  K  M  T  P  K  I  M  :  L  K  S  V  L  N  H  S  R  L  K  K  N  N  F  *  R  L  S  T  S  S  K  F  K  T  S  V  M  P  L  S  S  H  V  R  F  R :   R  Q  L  S  F  I  L  R  G  F  I  Y  N  G  P  *  W  N  I  T  P  K  T  L   : C  *  P  A  Y  M  Q  L  A  R  Q  R  K  T  M  Y  Q  L  R  S  L  G  R  V  L  D  R  I  I  M  *  S  S  T  M  R  C  W  F  S  R :   V  *  D  L  I  *  L  F  T  L  H  I  V  L  L  K  V  L  S  V  I  *  R  S  F  S  V  D  L  L  H  L  N  P  L   : R  I  L  W  S  *  R  *  R  P  A  C  G  S  E   : G  F  T  *  Y  C  *  D  * </second_frame>
            <third_frame>   H  C  A  Y  *  I  L  P  L  Q  S  L  K  P  F  R  Y  I  N  P  L  L  V  S  P  A  I  V  S  P  A  K  N  L  R :   S  F  Y  T  L  F  L  K  I  L  *  R  *  N  T  G  A  W  H  S  L  K  G  I  A  S  K  R  K  L  E  L  A  E  R  R  H  G  *  F  C  D  I  Y  S  *  N  Q  V  D  F  Y  S  P  R  Y   : *  T  *  V  *  S  C  *  S  Q  S  E  T  S  T  G  E   : V  W  N  N  A  N  G  S  *  Y  *  W  V  V  L  I  C  *  K  P  K  *  R  Q  R  *  C :   *  K  A  S  *  T  T  Q  G  *  R  R  T  T  S  K  G  F  L  R  V  Q  N  S  R  R  L  *  C  L  *  V  P  T  *  D  S   : G  D  S  S  H  L  F  *  E  V  L  S  T  M  V  R  D  G  T  S  P  Q  R  H  Y  :  V  N  L  H  I  C  S  L  Q  G  R  G  K  P  C  I  S  *  G  A  W  E  G  Y  W  T  G  S  S  C  N  P  Q  Q  *  D  A  G  F  P   : E  S  R  I  *  S  N  C  L  L  S  I  S  C  S  *  R  F  Y  Q  *  F  R  G  L  F  L  L  I  C  Y  T  *  T  L  *  :  E  F  C  G  A  K  D  E  D  Q  L  V  A  L  K  :  G  S  L  D  T  A  R  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17244" stop="17167"/>
                    <exon start="17060" stop="17010"/>
                    <exon start="15887" stop="15809"/>
                    <exon start="15677" stop="15565"/>
                    <exon start="15486" stop="15413"/>
                    <exon start="15171" stop="15051"/>
                    <exon start="14960" stop="14877"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQREDMADFVTSTHRTKWIFTPQDIKHKYKVANHRAKQALEKYGTTRMEVDIDGSFSYAESQNDAKDNAEKRPKPLKVEEEQLLKAFYEFKIQDVCDAFKFPRKIQATALIYFKRFYLQWSVMEHHPKDIMLTCIYAACKAEENHVSAEELGKGIGQDHHVILNNEMLVFQSLGFDLIVYSPYRALEGFISDLEVFFC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="17877" e_stop="17779"/>
            <exon e_start="17289" e_stop="17167"/>
            <exon e_start="17060" e_stop="17010"/>
            <exon e_start="15887" e_stop="15809"/>
            <exon e_start="15677" e_stop="15565"/>
            <exon e_start="15486" e_stop="15413"/>
            <exon e_start="15171" e_stop="15076"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.593" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.795" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.884" e_score="1.000"/>
          <exon-intron don_prob="0.778" acc_prob="0.439" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.892" e_score="0.973"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="17877" e_stop="17779" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="17778" i_stop="17290" i_length="489"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17289" e_stop="17167" e_length="123"/>
          </exon>
          <intron i_serial="2" don_prob="0.593" acc_prob="0.952">
            <gDNA_intron_boundary i_start="17166" i_stop="17061" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="17060" e_stop="17010" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.795">
            <gDNA_intron_boundary i_start="17009" i_stop="15888" i_length="1122"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15887" e_stop="15809" e_length="79"/>
          </exon>
          <intron i_serial="4" don_prob="0.974" acc_prob="0.884">
            <gDNA_intron_boundary i_start="15808" i_stop="15678" i_length="131"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="15677" e_stop="15565" e_length="113"/>
          </exon>
          <intron i_serial="5" don_prob="0.778" acc_prob="0.439">
            <gDNA_intron_boundary i_start="15564" i_stop="15487" i_length="78"/>
          </intron>
          <exon e_serial="6" e_score="0.973">
            <gDNA_exon_boundary e_start="15486" e_stop="15413" e_length="74"/>
          </exon>
          <intron i_serial="6" don_prob="0.995" acc_prob="0.892">
            <gDNA_intron_boundary i_start="15412" i_stop="15172" i_length="241"/>
          </intron>
          <exon e_serial="7" e_score="0.969">
            <gDNA_exon_boundary e_start="15171" e_stop="15076" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17877" stop="17779"/>
              <exon start="17289" stop="17167"/>
              <exon start="17060" stop="17010"/>
              <exon start="15887" stop="15809"/>
              <exon start="15677" stop="15565"/>
              <exon start="15486" stop="15413"/>
              <exon start="15171" stop="15076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4642-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCTTATTAAATTCTTCCATTACAAAGCCTTAAGCCCTTCCGGTATATTAACCCTCTGCTGGTCTCTCCGGCGATCGTTTCACCGGCGAAAAATCTGCG : GGGCATGGCATAGTTTAAAAGGAATCGCATCCAAACGAAAATTAGAATTGGCAGAGAGAAGACATGGCTGATTTTGTGACATCTACTCATAGAACCAAGTGGATTTTTACTCCCCAAGATATT : AAACATAAGTATAAAGTTGCTAATCACAGAGCGAAACAAGCACTGGAGAAG : TATGGAACAACGCGAATGGAAGTTGATATTGATGGGTCGTTCTCATATGCTGAAAGCCAAAATGACGCCAAAGATAATG : CTGAAAAGCGTCCTAAACCACTCAAGGTTGAAGAAGAACAACTTCTAAAGGCTTTCTACGAGTTCAAAATTCAAGACGTCTGTGATGCCTTTAAGTTCCCACGTAAGATTCAG : GCGACAGCTCTCATTTATTTTAAGAGGTTTTATCTACAATGGTCCGTGATGGAACATCACCCCAAAGACATTAT : GTTAACCTGCATATATGCAGCTTGCAAGGCAGAGGAAAACCATGTATCAGCTGAGGAGCTTGGGAAGGGTATTGGACAGGATCATCATGTAATCCT</gDNA_template>
            <first_frame> C  L  L  N  S  S  I  T  K  P  *  A  L  P  V  Y  *  P  S  A  G  L  S  G  D  R  F  T  G  E  K  S  A  :  G  H  G  I  V  *  K  E  S  H  P  N  E  N  *  N  W  Q  R  E  D  M  A  D  F  V  T  S  T  H  R  T  K  W  I  F  T  P  Q  D  I  :  K  H  K  Y  K  V  A  N  H  R  A  K  Q  A  L  E  K  :  Y  G  T  T  R  M  E  V  D  I  D  G  S  F  S  Y  A  E  S  Q  N  D  A  K  D  N   : A  E  K  R  P  K  P  L  K  V  E  E  E  Q  L  L  K  A  F  Y  E  F  K  I  Q  D  V  C  D  A  F  K  F  P  R  K  I  Q  :  A  T  A  L  I  Y  F  K  R  F  Y  L  Q  W  S  V  M  E  H  H  P  K  D  I  M :   L  T  C  I  Y  A  A  C  K  A  E  E  N  H  V  S  A  E  E  L  G  K  G  I  G  Q  D  H  H  V  I   </first_frame>
            <second_frame>  A  Y  *  I  L  P  L  Q  S  L  K  P  F  R  Y  I  N  P  L  L  V  S  P  A  I  V  S  P  A  K  N  L  R :   G  M  A  *  F  K  R  N  R  I  Q  T  K  I  R  I  G  R  E  K  T  W  L  I  L  *  H  L  L  I  E  P  S  G  F  L  L  P  K  I  L :   N  I  S  I  K  L  L  I  T  E  R  N  K  H  W  R  S :   M  E  Q  R  E  W  K  L  I  L  M  G  R  S  H  M  L  K  A  K  M  T  P  K  I  M  :  L  K  S  V  L  N  H  S  R  L  K  K  N  N  F  *  R  L  S  T  S  S  K  F  K  T  S  V  M  P  L  S  S  H  V  R  F  R :   R  Q  L  S  F  I  L  R  G  F  I  Y  N  G  P  *  W  N  I  T  P  K  T  L   : C  *  P  A  Y  M  Q  L  A  R  Q  R  K  T  M  Y  Q  L  R  S  L  G  R  V  L  D  R  I  I  M  *  S  </second_frame>
            <third_frame>   L  I  K  F  F  H  Y  K  A  L  S  P  S  G  I  L  T  L  C  W  S  L  R  R  S  F  H  R  R  K  I  C   : G  A  W  H  S  L  K  G  I  A  S  K  R  K  L  E  L  A  E  R  R  H  G  *  F  C  D  I  Y  S  *  N  Q  V  D  F  Y  S  P  R  Y   : *  T  *  V  *  S  C  *  S  Q  S  E  T  S  T  G  E   : V  W  N  N  A  N  G  S  *  Y  *  W  V  V  L  I  C  *  K  P  K  *  R  Q  R  *  C :   *  K  A  S  *  T  T  Q  G  *  R  R  T  T  S  K  G  F  L  R  V  Q  N  S  R  R  L  *  C  L  *  V  P  T  *  D  S   : G  D  S  S  H  L  F  *  E  V  L  S  T  M  V  R  D  G  T  S  P  Q  R  H  Y  :  V  N  L  H  I  C  S  L  Q  G  R  G  K  P  C  I  S  *  G  A  W  E  G  Y  W  T  G  S  S  C  N  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17244" stop="17167"/>
                    <exon start="17060" stop="17010"/>
                    <exon start="15887" stop="15809"/>
                    <exon start="15677" stop="15565"/>
                    <exon start="15486" stop="15413"/>
                    <exon start="15171" stop="15078"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWQREDMADFVTSTHRTKWIFTPQDIKHKYKVANHRAKQALEKYGTTRMEVDIDGSFSYAESQNDAKDNAEKRPKPLKVEEEQLLKAFYEFKIQDVCDAFKFPRKIQATALIYFKRFYLQWSVMEHHPKDIMLTCIYAACKAEENHVSAEELGKGIGQDHHVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="40025" PGL_stop="40524"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40025" e_stop="40524"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="40025" e_stop="40524" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40025" stop="40524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1982" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAACACCAACAACTAGCCCTTGAAGCTGCAAGAAATGGCATTGTCTTGCTCAAGAATACCGGCAAGTTGCTGCCTCTTTCCAAAGCGAAAACCAACTCCCTTGCTGTCATCGGTCATAATGCCAACAATGCTTATATTCTTCGTGGGAACTATGACGGTCCTCCCTGCAAATACATCGAAATTCTCAAGGCATTGGTTGGTTATGCAAAGTCAGTTCAGTACCAACAGGGTTGCAATGCGGCTAACTGCACGTCTGCTAACATTGATCAAGCTGTCAACATTGCAAGAAATGCAGATTATGTTGTTTTAATCATGGGGTTGGATCAAACTCAAGAGAGGGAACAATTTGATCGCGATGACTTAGTGCTCCCGGGGCAGCAAGAAAATCTTATCAATAGTGTTGCTAAAGCTGCAAAGAAGCCTGTTATATTGGTGATTCTCTCAGGAGGTCCAGTTGATATTTCTTTCGCGAAATATAACCCTAAAATAGGAAGCATTTT</gDNA_template>
            <first_frame> Q  H  Q  Q  L  A  L  E  A  A  R  N  G  I  V  L  L  K  N  T  G  K  L  L  P  L  S  K  A  K  T  N  S  L  A  V  I  G  H  N  A  N  N  A  Y  I  L  R  G  N  Y  D  G  P  P  C  K  Y  I  E  I  L  K  A  L  V  G  Y  A  K  S  V  Q  Y  Q  Q  G  C  N  A  A  N  C  T  S  A  N  I  D  Q  A  V  N  I  A  R  N  A  D  Y  V  V  L  I  M  G  L  D  Q  T  Q  E  R  E  Q  F  D  R  D  D  L  V  L  P  G  Q  Q  E  N  L  I  N  S  V  A  K  A  A  K  K  P  V  I  L  V  I  L  S  G  G  P  V  D  I  S  F  A  K  Y  N  P  K  I  G  S  I   </first_frame>
            <second_frame>  N  T  N  N  *  P  L  K  L  Q  E  M  A  L  S  C  S  R  I  P  A  S  C  C  L  F  P  K  R  K  P  T  P  L  L  S  S  V  I  M  P  T  M  L  I  F  F  V  G  T  M  T  V  L  P  A  N  T  S  K  F  S  R  H  W  L  V  M  Q  S  Q  F  S  T  N  R  V  A  M  R  L  T  A  R  L  L  T  L  I  K  L  S  T  L  Q  E  M  Q  I  M  L  F  *  S  W  G  W  I  K  L  K  R  G  N  N  L  I  A  M  T  *  C  S  R  G  S  K  K  I  L  S  I  V  L  L  K  L  Q  R  S  L  L  Y  W  *  F  S  Q  E  V  Q  L  I  F  L  S  R  N  I  T  L  K  *  E  A  F  </second_frame>
            <third_frame>   T  P  T  T  S  P  *  S  C  K  K  W  H  C  L  A  Q  E  Y  R  Q  V  A  A  S  F  Q  S  E  N  Q  L  P  C  C  H  R  S  *  C  Q  Q  C  L  Y  S  S  W  E  L  *  R  S  S  L  Q  I  H  R  N  S  Q  G  I  G  W  L  C  K  V  S  S  V  P  T  G  L  Q  C  G  *  L  H  V  C  *  H  *  S  S  C  Q  H  C  K  K  C  R  L  C  C  F  N  H  G  V  G  S  N  S  R  E  G  T  I  *  S  R  *  L  S  A  P  G  A  A  R  K  S  Y  Q  *  C  C  *  S  C  K  E  A  C  Y  I  G  D  S  L  R  R  S  S  *  Y  F  F  R  E  I  *  P  *  N  R  K  H  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40025" stop="40522"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QHQQLALEAARNGIVLLKNTGKLLPLSKAKTNSLAVIGHNANNAYILRGNYDGPPCKYIEILKALVGYAKSVQYQQGCNAANCTSANIDQAVNIARNADYVVLIMGLDQTQEREQFDRDDLVLPGQQENLINSVAKAAKKPVILVILSGGPVDISFAKYNPKIGSI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="61682" PGL_stop="62093"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61682" e_stop="62093"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="61682" e_stop="62093" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61682" stop="62093"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M205-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGTTTTTTTTTGTGAAGACTTTGCTCCTGGCTCGGACAGAGGTTGATAACACAGCTGGTTTAGCAGCTGATTTCGTGTTCAGAATATTGTTTGACAAAAGAATTGTTGTCAATGAAGAAAATGGTTGGTTATGTCAGAAAGGAAGAGATCCTGGTTGATTATGGTGGTACTGTTGGAAGTTTTAACCAGTTAATGGGACTTTGAGCATGGGAGCTCAGTTGTGCCTGAAGTTCTTTTGCTGACACATTATAATGGTAAATGTTTGGAATAAATGATGTTAGTATATGCTTGCTTTGGTTGGTATGAGAAGGAAAAGGCTTCATCTCAGCAAATGATCTTTTGAATATACAGCCATTCGGCTGGAAAATGGCAACCCTTTATGATTGCTTCTATGTTGATGATATATACCA</gDNA_template>
            <first_frame> A  V  F  F  C  E  D  F  A  P  G  S  D  R  G  *  *  H  S  W  F  S  S  *  F  R  V  Q  N  I  V  *  Q  K  N  C  C  Q  *  R  K  W  L  V  M  S  E  R  K  R  S  W  L  I  M  V  V  L  L  E  V  L  T  S  *  W  D  F  E  H  G  S  S  V  V  P  E  V  L  L  L  T  H  Y  N  G  K  C  L  E  *  M  M  L  V  Y  A  C  F  G  W  Y  E  K  E  K  A  S  S  Q  Q  M  I  F  *  I  Y  S  H  S  A  G  K  W  Q  P  F  M  I  A  S  M  L  M  I  Y  T  </first_frame>
            <second_frame>  L  F  F  F  V  K  T  L  L  L  A  R  T  E  V  D  N  T  A  G  L  A  A  D  F  V  F  R  I  L  F  D  K  R  I  V  V  N  E  E  N  G  W  L  C  Q  K  G  R  D  P  G  *  L  W  W  Y  C  W  K  F  *  P  V  N  G  T  L  S  M  G  A  Q  L  C  L  K  F  F  C  *  H  I  I  M  V  N  V  W  N  K  *  C  *  Y  M  L  A  L  V  G  M  R  R  K  R  L  H  L  S  K  *  S  F  E  Y  T  A  I  R  L  E  N  G  N  P  L  *  L  L  L  C  *  *  Y  I  P </second_frame>
            <third_frame>   C  F  F  L  *  R  L  C  S  W  L  G  Q  R  L  I  T  Q  L  V  *  Q  L  I  S  C  S  E  Y  C  L  T  K  E  L  L  S  M  K  K  M  V  G  Y  V  R  K  E  E  I  L  V  D  Y  G  G  T  V  G  S  F  N  Q  L  M  G  L  *  A  W  E  L  S  C  A  *  S  S  F  A  D  T  L  *  W  *  M  F  G  I  N  D  V  S  I  C  L  L  W  L  V  *  E  G  K  G  F  I  S  A  N  D  L  L  N  I  Q  P  F  G  W  K  M  A  T  L  Y  D  C  F  Y  V  D  D  I  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="108976" PGL_stop="109493"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108976" e_stop="109493"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="108976" e_stop="109493" e_length="518"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108976" stop="109493"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M372-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108976" stop="109490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M372-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108976" stop="109458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M275-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGCAGCTGTCTAACAATAATTGAAAACAAAAGCTAAGTAATTATGGTGACTTTCTTCTACAAGTTCAATGATAAAGGAGAATATATAAATTTTTTCATGAAGAAAGATGGAATTCTCTAGACACAAATCACAAACTTCTTACTTCAAAAAAGCAAATCTTAAATCAATCAGAACAAGTTTTGCAACATAGATTCCGTCAATAGCCTTGGTCTTTCTTACATACATGGGTCCAAGTTGAATACAAATACGTGGAAAGGTGTCTCATTTTCCTAGGCCCTTATTTCAGGTGTGGGGACAGAGCGGAAACTTGTATGTTATTAAGAACTAGCATATAAAGTACAAAGGCCATTCAATATGAGCACTTAACTGTTCTTTCGGTCTTTTCTTTAGATATCAGCTTCAGATGAAGCTAGAAACCCTAATTTTATTCAGCTCTTCTATCTCCCTTCATCTTTGGCAAAGCTCCCTAATAATTTAAAAAGATAGTGAAATCTTCCTTAGTCTCCTCCTCTCAATTC</gDNA_template>
            <first_frame> C  S  C  L  T  I  I  E  N  K  S  *  V  I  M  V  T  F  F  Y  K  F  N  D  K  G  E  Y  I  N  F  F  M  K  K  D  G  I  L  *  T  Q  I  T  N  F  L  L  Q  K  S  K  S  *  I  N  Q  N  K  F  C  N  I  D  S  V  N  S  L  G  L  S  Y  I  H  G  S  K  L  N  T  N  T  W  K  G  V  S  F  S  *  A  L  I  S  G  V  G  T  E  R  K  L  V  C  Y  *  E  L  A  Y  K  V  Q  R  P  F  N  M  S  T  *  L  F  F  R  S  F  L  *  I  S  A  S  D  E  A  R  N  P  N  F  I  Q  L  F  Y  L  P  S  S  L  A  K  L  P  N  N  L  K  R  *  *  N  L  P  *  S  P  P  L  N   </first_frame>
            <second_frame>  A  A  V  *  Q  *  L  K  T  K  A  K  *  L  W  *  L  S  S  T  S  S  M  I  K  E  N  I  *  I  F  S  *  R  K  M  E  F  S  R  H  K  S  Q  T  S  Y  F  K  K  A  N  L  K  S  I  R  T  S  F  A  T  *  I  P  S  I  A  L  V  F  L  T  Y  M  G  P  S  *  I  Q  I  R  G  K  V  S  H  F  P  R  P  L  F  Q  V  W  G  Q  S  G  N  L  Y  V  I  K  N  *  H  I  K  Y  K  G  H  S  I  *  A  L  N  C  S  F  G  L  F  F  R  Y  Q  L  Q  M  K  L  E  T  L  I  L  F  S  S  S  I  S  L  H  L  W  Q  S  S  L  I  I  *  K  D  S  E  I  F  L  S  L  L  L  S  I  </second_frame>
            <third_frame>   Q  L  S  N  N  N  *  K  Q  K  L  S  N  Y  G  D  F  L  L  Q  V  Q  *  *  R  R  I  Y  K  F  F  H  E  E  R  W  N  S  L  D  T  N  H  K  L  L  T  S  K  K  Q  I  L  N  Q  S  E  Q  V  L  Q  H  R  F  R  Q  *  P  W  S  F  L  H  T  W  V  Q  V  E  Y  K  Y  V  E  R  C  L  I  F  L  G  P  Y  F  R  C  G  D  R  A  E  T  C  M  L  L  R  T  S  I  *  S  T  K  A  I  Q  Y  E  H  L  T  V  L  S  V  F  S  L  D  I  S  F  R  *  S  *  K  P  *  F  Y  S  A  L  L  S  P  F  I  F  G  K  A  P  *  *  F  K  K  I  V  K  S  S  L  V  S  S  S  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0138I19.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="110823" PGL_stop="110371"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="110823" e_stop="110371"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="110823" e_stop="110371" e_length="453"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="110823" stop="110371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M275-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCAGGGAGACTGATGATATTGTGGAAAAAATTGGTAAGACCTTTTTATTTGCCAAGTTTATATCATTTCGAATATTGACTGGAGCCTGCTGCTGAAATTTTGGTCATTGAACAGATAAAATATTTAATGAACCAGATTATTACTATTATTATATAATAAATTCCTTTTTCATTGAGAAGATTTACCCTTGAAAGACAATTTATCATTTCTGATACAGAGTCTGATGGCTCAATACTTCTTATGCATTTAAGTGTATTTCTGTCATTTCTACATTTGTTTTCTCATCTAACTCGTGGCATTTAGCTTATATTTGGATCAGAAACATTACTTCATTTTTAGAGTTTGCTCATGATTGTGTCTCCAAAGAATTGCATATGTTTAATGTGTATGCACTTTCAGAGCTATCATTGATCTTGCATCAACATTTCTTTTGTTTAATCTCCGGTTGGAG</gDNA_template>
            <first_frame> N  Q  G  D  *  *  Y  C  G  K  N  W  *  D  L  F  I  C  Q  V  Y  I  I  S  N  I  D  W  S  L  L  L  K  F  W  S  L  N  R  *  N  I  *  *  T  R  L  L  L  L  L  Y  N  K  F  L  F  H  *  E  D  L  P  L  K  D  N  L  S  F  L  I  Q  S  L  M  A  Q  Y  F  L  C  I  *  V  Y  F  C  H  F  Y  I  C  F  L  I  *  L  V  A  F  S  L  Y  L  D  Q  K  H  Y  F  I  F  R  V  C  S  *  L  C  L  Q  R  I  A  Y  V  *  C  V  C  T  F  R  A  I  I  D  L  A  S  T  F  L  L  F  N  L  R  L  E </first_frame>
            <second_frame>  I  R  E  T  D  D  I  V  E  K  I  G  K  T  F  L  F  A  K  F  I  S  F  R  I  L  T  G  A  C  C  *  N  F  G  H  *  T  D  K  I  F  N  E  P  D  Y  Y  Y  Y  Y  I  I  N  S  F  F  I  E  K  I  Y  P  *  K  T  I  Y  H  F  *  Y  R  V  *  W  L  N  T  S  Y  A  F  K  C  I  S  V  I  S  T  F  V  F  S  S  N  S  W  H  L  A  Y  I  W  I  R  N  I  T  S  F  L  E  F  A  H  D  C  V  S  K  E  L  H  M  F  N  V  Y  A  L  S  E  L  S  L  I  L  H  Q  H  F  F  C  L  I  S  G  W   </second_frame>
            <third_frame>   S  G  R  L  M  I  L  W  K  K  L  V  R  P  F  Y  L  P  S  L  Y  H  F  E  Y  *  L  E  P  A  A  E  I  L  V  I  E  Q  I  K  Y  L  M  N  Q  I  I  T  I  I  I  *  *  I  P  F  S  L  R  R  F  T  L  E  R  Q  F  I  I  S  D  T  E  S  D  G  S  I  L  L  M  H  L  S  V  F  L  S  F  L  H  L  F  S  H  L  T  R  G  I  *  L  I  F  G  S  E  T  L  L  H  F  *  S  L  L  M  I  V  S  P  K  N  C  I  C  L  M  C  M  H  F  Q  S  Y  H  *  S  C  I  N  I  S  F  V  *  S  P  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0138I19.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="110597" stop="110373"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WLNTSYAFKCISVISTFVFSSNSWHLAYIWIRNITSFLEFAHDCVSKELHMFNVYALSELSLILHQHFFCLISGW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 73 chains have been computed
$ 
$ memory statistics:
$ 15520 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 1940 bytes was the average size of a spliced alignment
$ 10800 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2160 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 73 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 17:37:02
-->
