<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 11:42:18"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315358" ref_strand="+" ref_description="SGN-U315358        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT5G09360.1 | Symbol: None | laccase family protein / diphenol oxidase family protein, similar to laccase (Pinus taeda)(GI:13661201) | chr5:2906427-2908659 REVERSE | Aliases: T5E8.160, T5E8_160 (evalue: 9e-135, score=477) genbank/nr: putative(evalue: 2e-137, score=492)">
      <seq>ttaatggtgcacttattatacgtccagcaaataaaactaattatccttttcctagacctactgctgaaattcccatcatattaggggagtggtggaaaagtgatgtacaagcagttgtgaatgagtttcttacaagtggagcagatgcaaataaatctgatgcatttcttataaatggtcaaccaggagatttatatccttgctcaacaaatgacacattcaaactaacggtggagaaaaataagacatatttgctcagaattgttaacgccgtaatgaataatctcatgtttttctccgttgcaaatcaccaactcaccgtcgtaggaactgacggtgcgtacgttaaaccgttcaagtcaaattacatcacaatttccccgggtgaaactattgatgttttactcgaagcaaatcaaaaccctaaccactattatatgggcgcgaaagcctacaatagcgtagtcggagttgattttaacaacataaccaccaccgccatcgttcagtatcgtggaaattactccacttcatcaccacccatcctccccgatctcccgaatttcgacgatacgaacgcatcgtttaatttcactaggtcattaaaaagcctagccgataaaggacaccctattgacgtaccattaaacgttacaaccaatttattgttcacattttccgtaaataccttaccttgcgaggatgaatcgtgtagtggacctaacggggatcgattcgcggctagcgtgaataatataagctttgtgttacctcgtatcgatatattagaagcttattataaaaatattcaaggggtttatcgagatgaatttcctagttttccgcctttaaattttaattttacgggtgattctctacccgtggaattacaacgtcccgatcgtagaacggaggttcatgttcttgaatatggaacacatgtagagattgtgttacaaggaactagtttattaggtggagttgatcatccaattcatttacatggatatagtttttatgttgttggatctggatttggaaattttgacaaagataaagaccctttgaattataatcttgttgatccacctcttcagaatactattgctgttgttagaaatggatgggctgccattaggttcaaagctgataatccaggagtatggtttatgcattgtcatttagaacgtcacgtaagttggggaatggaaatggcatttattgtgaaagatggaaaaggctcagaagaaaaattgcttcctcctcctcctgatatgcctcaatgttgaatttaaatatacctcacatttaactataatttatttttaatttttggaacatactctaacgaggggagaaagaaaaaatgtatttgcttattgattttattaattcattactatgatatatatagcttggatatatatatttgtatttgctcttctttttttttatgtaataaaattcatattttatatagcttattggagctatatttaatcatgataataataatgtaaatcttgttttaagttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="8730" stop="12235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9030" g_stop="9113" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9114" i_stop="9194" i_length="81">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9195" g_stop="9323" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="213" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9324" i_stop="9874" i_length="551">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9875" g_stop="10819" g_length="945"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="1158" r_length="945" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11558" g_stop="11931" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1159" r_stop="1532" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1536" polyA_stop="1546"/>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-U315358" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1532</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315358" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9030" e_stop="9113"/>
          <exon e_start="9195" e_stop="9323"/>
          <exon e_start="9875" e_stop="10819"/>
          <exon e_start="11558" e_stop="11931"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAGGTATGTATTATTAATATACTCGTTCCGTTTTAATTTGTTTTGATTGGTATCGAAATTTTTAAAATTATTATTAAATTGTAGGGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATGGTAAAACAAATACTATTAATTAATTTTAATTACACTAATCTTTGTACAAATCTATATGTTATATTTCCTTTGGCAACGTTCAATTGTCATGTTGTGCTTTTCGAATTTGACTGTTACATTTACTGAATTACTTCTTTATAAAAATATAAAGTTTGAGCAAAAGCTACTGAGTTTACGTGAATCTATAACTAGAAGGCTAGATTTGTCTCTAAAATAATTTATAACCACTACTTATGCTAAAAATTTCAACTTTTTTTTTTTAACTTTCTTAAATTTTATATCAATTATAAATCTCGTCAGGTATATTGAGATAAAAGGGGTGTTACTTTTCAAAGCTTAACCGCGTTAGCATAATTCAAAAGGAGAAATGATAAAAGTCATAATAATATTCAAACATATGTACTTTATTGTAAAATTCAAACTAGTCAATGGATTATATATGATTTTATTTTTTCATTTTTCTCACGTAATATATAGTTTTGATGATGCAAATTATGTTGAAAAATCATTTATGAACATAACTAATTTTTTCTTTTTTTTCTTTTCAACAGACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGCCATCGTTCAGTATCGTGGAAATTACTCCACTTCATCACCACCCATCCTCCCCGATCTCCCGAATTTCGACGATACGAACGCATCGTTTAATTTCACTAGGTCATTAAAAAGCCTAGCCGATAAAGGACACCCTATTGACGTACCATTAAACGTTACAACCAATTTATTGTTCACATTTTCCGTAAATACCTTACCTTGCGAGGATGAATCGTGTAGTGGACCTAACGGGGATCGATTCGCGGCTAGCGTGAATAATATAAGCTTTGTGTTACCTCGTATCGATATATTAGAAGCTTATTATAAAAATATTCAAGGGGTTTATCGAGATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAGGTATATTTTTTAATTGATCATGTATATTCTTTGTATGCATTGTTATATATATATGTTACTATACTTAAAAAGGTGTCAAAGTAGGTGTGCTTGACGAGATCTGACTAGTTAATTTGATACGAGTTAATAAATGAACAAATTATTAACTCGTACAGAAGTTAATTATGTGAGTTGAGATAGTTGGATTAAAACGGACTTCATAACGAGTCATTATCCAAATCGGTCTAACTTTTACCAAGTTTTAGTTTTGATTTATTTGTTCTTTAGTATGTATGTTTTTTAATTACCAAACAAAAACAATGATAAGGTCTCTCATTGGTTAAATAAAATAGACTAAGTTAATGATAGATACGTTGAACTCGTATCATCATATTTTTATGAGCTAATTTTAATAAGCAGGCACTTTATTTGTGCTTTAACATGTTGGTCTAGTCAAAACAAAGACATTTTATCAATGTGAAATTTGTTTTACAACTAAATCACAATTTTTTTTTTATACATAAATTGTTATTTTTAGAGGTTAAACTCAGCTTTATTTTATATTATATTATTATTAGATATAAATATATCATGCATGTATTCTTGTAAACCCTCAAAACATGGTAAATAACTTATTACAATATGATCAAGTAAAATAATTATATAATATTTACTGTATTAAATTAAATTAAATTATGTCATTAATATATATAGTTCGAATTCTTATTTAATAATATGTATTTTTTTTTAATATAACAGGAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATAGCTTATTGGAGCTATATTTAATCATGATAATAATAATGTAAATCTTGTTTTAA</genome_strand>
        <mrna_strand>TTAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAG.................................................................................GGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGCCATCGTTCAGTATCGTGGAAATTACTCCACTTCATCACCACCCATCCTCCCCGATCTCCCGAATTTCGACGATACGAACGCATCGTTTAATTTCACTAGGTCATTAAAAAGCCTAGCCGATAAAGGACACCCTATTGACGTACCATTAAACGTTACAACCAATTTATTGTTCACATTTTCCGTAAATACCTTACCTTGCGAGGATGAATCGTGTAGTGGACCTAACGGGGATCGATTCGCGGCTAGCGTGAATAATATAAGCTTTGTGTTACCTCGTATCGATATATTAGAAGCTTATTATAAAAATATTCAAGGGGTTTATCGAGATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATAGCTTATTGGAGCTATATTTAATCATGATAATAATAATGTAAATCTTGTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345085" ref_strand="+" ref_description="SGN-U345085        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:27013307-27020770 FORWARD | Aliases: F14O23.20, F14O23_20(evalue: 3e-88, score=267) genbank/nr: Exocyst(evalue: 4e-75, score=284)">
      <seq>ttcgagatccctatatactccatcttcaatttcaattcaaacattcaaaattttctcagtgaatttagctgtgagatttgtaaatagttgcgaaaatgatggctgatgatctcggcgttgaggcgaaggaagcctccgttcgtgaggtcgctaagctattgcctttacctgagcttttacagtctatttcctcgatcaaagccgattatattgctcgtcaacaggcaaatgatgcacaacttagtacaatggtcgctgaacaggttgagcaagctcaaggtggtctgcaatcactttctttatctcagaagactataaatcagctccgagaaaacttcctttctattgaaaagctttgtcaagagtgccaaactttaatcgaaaatcatgaccagataaaaattctcagtaacaccaggaataacttgaacactactctgaaggatgtggaggggatgatgtcaatttcggtagaggcgtctgaagcacgggattctcttagagatgataaggaactaattaacacctatgaaaggttaactgctcttgatggnaagcgaaggttcgcgctagctgctgcagggtctcataaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="13883" stop="16825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14183" g_stop="14406" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14407" i_stop="15164" i_length="758">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15165" g_stop="15203" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="263" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15204" i_stop="15427" i_length="224">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.965" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15428" g_stop="15516" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="352" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15517" i_stop="15595" i_length="79">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="15596" g_stop="15686" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="443" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="15687" i_stop="16278" i_length="592">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="16279" g_stop="16368" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="533" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="16369" i_stop="16463" i_length="95">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="16464" g_stop="16525" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="595" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-U345085" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14183" e_stop="14406"/>
          <exon e_start="15165" e_stop="15203"/>
          <exon e_start="15428" e_stop="15516"/>
          <exon e_start="15596" e_stop="15686"/>
          <exon e_start="16279" e_stop="16368"/>
          <exon e_start="16464" e_stop="16525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGATCCCTATATACTCCATCTTCAATTTCAATTCAAACATTCAAAATTTTCTCAGTGAATTTAGCTGTGAGATTTGTAAATAGTTGCGAAAATGATGGCTGATGATCTCGGCGTTGAGGCGAAGGAAGCCTCCGTTCGTGAGGTCGCTAAGCTATTGCCTTTACCTGAGCTTTTACAGTCTATTTCCTCGATCAAAGCCGATTATATTGCTCGTCAACAGGTTTCATATAGATCCACTGCTTATTTTTTCCTTTTGTTTGTTTTACGGTGAAATTTTGAGTATGTTGTGAAGTTTTTTATTTGTTCTGTCTAGGGAAATTTATTGTCATTTGTAGTTCAATTGTGTAGAGGAACTGTTATGAGTTGTTGACAGTCTGTTTGAAGCAGATAGTGATTGAGCAATACGAATTTTGGAGATTGTTTCTTAATTCAAGTTTAAATTGAGGAAAAAATGTATTGTGATCAGGAAATTCTTTAAGAGCTACCTTATGCATCTGGTATCAGATGACTTGTCAATTTTTTTTCTTTTTTGGTTGCCACATAAATGTGTTGCTTTGAACGTTTAGGTTTGGTTACTAAGTCGCTGTTCCTGAATTTCAGTTGCTTCTTTATTGAAAATCTAAAAGTAATGTAGAAAATGTCATAAATACGATGAAATAAATTTCAGCTTTTGATATATTGTGGTAATCTGTTAAAGTGATCTAATTACCTGCTAAAAGCAATAGGATTTTTTCTCGTGATTATAAACGAGTTGTTGATGGATCTTAACTGGCTTTCTTAGCCTCACATAGTTTATCACACATTGTAATAACATGAAGGTCCAATTTTTGGCTGATGTTGTTGCACATGGTCATGTTTATTTGTGGCTTTGTTGTAGAGAGGCTTCTTGTTTCTTCATAGTTTCAACTTAGTGGTCTGAACTTTATTTGAACTGCACTACAATTACTTATGATCTGGTACTGTTTCATGATGGATCAGGCAAATGATGCACAACTTAGTACAATGGTCGCTGAACAGGTATGTGGATGCTTCGACTTAATGTTTAAACGACACATTCTGATATTTTGATAATGCTATTGCAATTTCTTCTGTTTTTTGCTGTATTTTTACTTGGAAAGCTTTTGAAGCTCTAATTTCCACCTTGTAATTTTTTCTTACATGGAGAGAAATGTGTGATATGAGAAACATTATCTGTATCCAGATACTAAACTCTAGCTGCTGCATAATTTTCTGGAATACAGGTTGAGCAAGCTCAAGGTGGTCTGCAATCACTTTCTTTATCTCAGAAGACTATAAATCAGCTCCGAGAAAACTTCCTTTCTATTGAAAAGTATAATAATGATTCACTTTTGTAGTTACATATGTCATTATTTATTGAGCTTGAGCTTAGTTCTTTCTTCTTGAACCAGGCTTTGTCAAGAGTGCCAAACTTTAATCGAAAATCATGACCAGATAAAAATTCTCAGTAACACCAGGAATAACTTGAACACTACTCTGAAGGTATGTCTTGCTCGTAGCTTTTTGTTCCTAGCTTTTAGGTAAAGCAGGTAAGTGAAATTTTATATGACCTTTTCCTTCAAGCTGATATCTTCTATCAAATTACGCTACACTGTTGCTGCACAGTCGACTGCACACTATCATATAGGTTGCTAGTACTTCTGCTATTATAAACTCTGCTTGTGCACCTAACATTATTTATTTCATAGGGCGTTGTGCCTATTTTTGTAACAGTGACTTAGGAGCCGTTTGTTTGTGGAACTTTTTTCTTTTCGTTTTTCTCCAAAGTAACGTTTGGTTATACATTGATGGTTGAACTGATTTTTTGAAAATGAATTTCAAGTTTGAAAAAGTGATTTTGACAAGTTTAAAGTGAATCTTTTCCCCTCACAAAAATTTCAACTTTTTTCAAGTCAACTTCATGTCCAAACACAGCTTCAATCTCCAAATACACTTTTTCAACTTAACTTCAAATAGTAGTTTTCAAATGTCACATTTTCATGTCCAAAAGCTTACTTAGTTTAGTCCAAAAGCTTGGTACTCTATGATGCTTCACTGATTCTCAATCCATATATAATCGCTTCGTCTCTGGTAGGATGTGGAGGGGATGATGTCAATTTCGGTAGAGGCGTCTGAAGCACGGGATTCTCTTAGAGATGATAAGGAACTAATTAACACCTATGAAGTAGGTTCTTCTCAGATTTATCACTTTCTTAATCATCAACTCTCTCCCTAGTCCTGCGCTGATAGTCCGGTGCATCCAATTTGAATTGGTTACAGAGGTTAACTGCTCTTGATGGAAAGCGAAGGTTCGCGCTAGCTGCTGCAGGGTCTCATAAAGA</genome_strand>
        <mrna_strand>TTCGAGATCCCTATATACTCCATCTTCAATTTCAATTCAAACATTCAAAATTTTCTCAGTGAATTTAGCTGTGAGATTTGTAAATAGTTGCGAAAATGATGGCTGATGATCTCGGCGTTGAGGCGAAGGAAGCCTCCGTTCGTGAGGTCGCTAAGCTATTGCCTTTACCTGAGCTTTTACAGTCTATTTCCTCGATCAAAGCCGATTATATTGCTCGTCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGATGCACAACTTAGTACAATGGTCGCTGAACAG................................................................................................................................................................................................................................GTTGAGCAAGCTCAAGGTGGTCTGCAATCACTTTCTTTATCTCAGAAGACTATAAATCAGCTCCGAGAAAACTTCCTTTCTATTGAAAA...............................................................................GCTTTGTCAAGAGTGCCAAACTTTAATCGAAAATCATGACCAGATAAAAATTCTCAGTAACACCAGGAATAACTTGAACACTACTCTGAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGGAGGGGATGATGTCAATTTCGGTAGAGGCGTCTGAAGCACGGGATTCTCTTAGAGATGATAAGGAACTAATTAACACCTATGAA...............................................................................................AGGTTAACTGCTCTTGATGGNAAGCGAAGGTTCGCGCTAGCTGCTGCAGGGTCTCATAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326716" ref_strand="+" ref_description="SGN-U326716        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:27013307-27020770 FORWARD | Aliases: F14O23.20, F14O23_20(evalue: 1e-149, score=526) genbank/nr: Exocyst(evalue: 2e-149, score=531)">
      <seq>cataaagaagagggtggtagactaagagaatattttgaagatgtggattgaacatgggagacgtttgagaagacactgtgggcccatattgcaaatttctccaaactggcttagggtagcccacaaacactcgtccgtgctataagggttgttgaaatgcaagaaatcctagatcaacaactcgcagaagaagcagctgaggctgagggaggtggtgctatggcttcagtcgcaaatcctcgaagaaatgccaaaaaaacaacttcttctaaaaatctcacacagcagaagttgaaggctcagggaaaaggctacaaggacaaatgttatgaaagtataaggaagtctgttgaagcacgttttgacaaattgctcgatgagcaagaccttaaaacagctatagaggaagctagagtgataggagaagagcttggagagatatatgactatgtggctccttgttttcctccaagatatgaagttttccagctcatggtaaatctttatacagagagatttgttcagtggctgagaaagatgagtgatcaagctagtaatatgacaaatatagagattttaaaggtaacaggttgggtggttgattaccaagaaagtctaattgagcttggagttgatgattctttagctcaagtttgctcagagagtggtgcaatggatcctctcatgaatgcgtatgttgagagaatgcaagctacaacaaagaaatggtacttgaatatcctagaggcagacaaagtacagccacctaaaaagactgatgatgggaaactatatacacctgccgccgttgacttatttaggattctgggggagcaggtgcaaattgtgcgagaaaatagcactgatgtcatgttatacaggatcgctttggctctcattcaggtaatgattgattttcaagcagctgagaggaagagattggaggaacctgcttctgaaattggtctggaatccctatgtgcaatgattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0149O17-dDGuW/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0149O17.1" temp_strand="+" temp_description="C04HBa0149O17.1  CU914525.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0149O17 sequenced_by:sanger upload_account_name:uk">
        <position start="16776" stop="23375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17080" g_stop="17172" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="119" r_length="93" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17173" i_stop="17832" i_length="660">
            <donor d_prob="0.900" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="17833" g_stop="17859" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="146" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="17860" i_stop="18083" i_length="224">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18084" g_stop="18191" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="254" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18192" i_stop="18295" i_length="104">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18296" g_stop="18458" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18459" i_stop="19582" i_length="1124">
            <donor d_prob="0.750" d_score="1.00"/>
            <acceptor a_prob="0.899" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="19583" g_stop="19638" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="473" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="20363" g_stop="20471" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="474" r_stop="582" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.930" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="21555" g_stop="21695" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="583" r_stop="723" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="21784" g_stop="21963" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="903" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="22989" g_stop="23072" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="904" r_stop="987" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0149O17.1" gen_strand="+" ref_id="SGN-U326716" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>961</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0149O17.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17080" e_stop="17172"/>
          <exon e_start="17833" e_stop="17859"/>
          <exon e_start="18084" e_stop="18191"/>
          <exon e_start="18296" e_stop="18458"/>
          <exon e_start="19583" e_stop="19638"/>
          <exon e_start="20363" e_stop="20471"/>
          <exon e_start="21555" e_stop="21695"/>
          <exon e_start="21784" e_stop="21963"/>
          <exon e_start="22989" e_stop="23072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATATTTTGAAGATGTGGATAGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTAAGGATAGGTATTCTTTATTGTTTAAAGAATCATTTATCAAGCTTTCCAATCACGCTGCCTGCATTACGATAATCTTGTTCGTGGAAGTTAATATTTGTGATTCATGATTACTAAGTACATAATTCATGATTACAAAGAATGCATAGATGGATGAATGATCTAATGAATGAACAAATGATAATATATATGAAATATTGTAGTTGTTTCACTCATATCTTAATCTGTAGGAGACAAAGTGCTGCAAGATTAATAGTGCAACGAGGAATCTAGGCTAGACAACACCATGTAATATGTTTGCACTGTTACCTAGATCCTACATGTTTGTCCACATACAATCACTTAGCTCAAAAGCTACAGTATCACTTTAAGCTTCTCATTTTCTCCTTCATATTTTTATTCTTGGTTCTGTACTCTGAATCTTTGCTCTATAACCACTTTTACAGATCTAGTTTGCTTTCCATCTATCTTTATTGAAATATTATGATTTGTGTATGTCATTTATAATTTTTAGTGAACTAATTTCTTCATGTACCTTATAGGAAAAATGAGTAACTTATTCTTCACGTGTTAATTGGCATCTTCTAGTTTGTGCTGAATCTCTTAAATTTCATTTATTTATTTTTTGAATTCTGATTATGATATTTGTTTTGTTTGGCATAATTTGCAGCCCACAAACACTCGTCCGTGCTATAAGGTATGTTAGCTTAAATGGAAACTTTCATGGTCTATGCTGAGTTGATTAATAAGACATTTGTTTCCATTTCTAATTAACGTACTTGTACTGTGTCGGAGCTGCCCCTAATATGCCATTAATCTTGACGTATATTGCACATATACAGTGTATAGTACCTTCATGCTCATCAATACATGTTACATGTATCCACGATCTAGACTGATAATTTATTCACCCTTAATCAGGGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAAGTAGGTGCTTTATCTTGCCTGATTTGTGCTTTGTTTAACGTCGTGCGTGCATCAGACATGTAAAAGTCATCAATTTGTATTCTGATTAATGTATTGGCTTGCAGAAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTGGTTAGAATATCTGCTTTTACATGTGGTCGTCTTCAACTTGCCTGCATTTAGAAGTTAAAACTGTTTACTTCTCCAAAGACAGTTTTTATAATCGACAAATTGAAAGATAATGGTTCTAAAGTAGACTTTGATATGGTTAAAGAAAACATATGTTCATCTTTTATGAAGTCTTTCTATCAAAACTCTTGATGCTTATCAAGGACCTCGTTGCCTTTCATGTATAGTCATATATGTTGACACAAATTGTCCCCATTTTTCTTCATCTTTCTGACAAAATACCAAGCTTTCCAGAGCACGTGCCCCATTTTAGTTGCTGATATCACGCTTTCCTAACTAATGTCTTGTTAACGACTCAACTAGCTTTCTGATGGAGCAGACATTGAGTGATTTGACACATTTGGCACCTGTAGGTCTTAGACTATCATTTCTCCCCAATTTGGCACACCTTTGTTATCTTGTCTTTTTTGAGTTCAACTGCCATCATTGATCATGCGAAAGAACTGCTTGAATTGCAAGGCTGTTGTCTCACCCAATCAGTTATAGGAAATGGTCAGGAACACCTTAAAGGATTTACAAGGGATACAGCAATGAGAAGAAAACTAAGGAGAAATGGAACTCTGGGAGAAGACGCACAATTGACTACACTCCTTAAATAGTGAAATAGTAAACAATCAAAGACAAGGTGGATGTGATGATACAAATAAAACATATGTTGCGAGAATTGAGTTCTTATCTGAATAGTAAACAATTAGAACCCTTTCCATGGGGGTGCATGTCATGCTTTTCTTTTTAAAGCCTTTTGGTTTGAAAAAAATCAAGATACTTTTCTCCGTAAGACATGTCATGATGGGTTTTAACATATTATATCAACACATAAATTTGTTGAGAAGATGATTAGATAAGGCGTTCTTGGAATTGATCCCCATTAGTTTCTTTGCTTGATAAAGAAAGAACATCTGTAAACAGTAGGAGGAAGAAATCAAGGTGAGAGATACATCCTCCTGCCATAGATGAATGACAAAGTAGAGGAAAATTAAACTTTGCTGTGATATGAGTTTATTCTCATAATAATTGCAGTTATTCTTTCTTATTTTGGTTTTGACATGCAATCTCATCAATTTCAGATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAGGTTCGTCCTATGTCTTTACACATATGTAATGTCATTTTCTTTTCCATTTGTCGGGAACAACTAGATTAAAGAATAATCTCCTACACTACTCATACTCTTAAGATTGTCCTCAGGACATTCCCACTATCTCAAATTTGGGTCTGTTGTATTCATCAGAGACTATGTTGGAAGTTTCTTCTCAATTTTGGAGATTACTTGGCAAAATAACTCTTCTTTAATCAGGAGTCCCGGGGATAAGAAATGAAGTCAATTTTTGGCCCTGTTGTATCCATTATATTACTATTGTAGTAATATACAAAGTTAACCTGTTCAAAAAAAAAAAAAACTCTCATCTCTAACATTAGTCACAATCTGAAATGCTTCTCATTGCTATTAATTGCTTTCTATGACTGCTAAAGTATAATTTTCTGCATTACTCAATGTTATATAGTCGATCAACATGATGTGATGTTCTTAATATTTTTGTTGATAAGAGAAGTTTCACATGCATCTTGTCAGTACAATTTTCTTCAAAAGCTTTTTTTAGCTGTAAGCTACTGCTTGTGCTAAATAGGCCTGAATTTTGGTCTTTATCATGCAACACTTTCAACTCAGAGGCATCAAAAAAAAGGGAAAAAATAACTCAAGAGGAGTCTGTATCCTAATATCTCTTAACACATGATCTACTTCTGTTTCTTTTCCATATGCAAATGTCCATTCTAACTTATTCTTTATATTGTCTCAGATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAGGTAATGCAATATTAATCATGTTGGCATTTTCTTTCTGTTGGATTATTTTGGCATGAGATTCTGTTGTTTGTTTGATTAAAAGTTAGAGAATATAGAGATCTTATAAAATATTGAATATGGAAGTCACAAAAAAGCATATATCAGTTTCTCTAATCTGAATAATATTTGGTATTAATTCCTATGTTGTGGTCATAAGCTCATCACTTTGAGGTCAAAGTTTGGCATGATTTGTTCAGTGGTTGAGAAAGCTGACGACCAAGCTAATAATATGATGAGTATATAGATTTTAAAGTTAATACAACTTTAATCATATCGGCATTTTCTTTTCTTTTCTTTTGGATAAGTTGAGGATTATGCTGGCAGTAGAATTTGTTGTTAAATTAAAAGCTGGAAAATATTGAATTTTGTAGAATAGGGAAGTCGTTAAAAAAGCATTTCAACCAGTTATTCCATATCTAATGAATATTTGACATCAATCCCTATGTTGTGGTCATAGGCTCATAGCTTCGAGTCAAAATTTGGTCAAATATGATTGTTTCTTTTACTACTTCTGGGCTTCTTTATTTTGACTTTATACAAATTAGGGGGTTCAATTTTTTACCTTCTTATCCTTGCTTGTAATTTATCTCAATGTTACTGGATTGTGCTTCCATTCTTGTAAATTTTCATGGGTAGTGCTATAGTATCCAATTGTGGCCCATGGGGCAGTAGTCTGAAGTTCCTTATCCATGTTAACTGTCCACCTAATAGGCTCATGGCTCAGTTTTGGTTCTTTCAACCAGTAATAAATTTCTATCAAGAAAAAGACAGTCAAGTATAAGGGTTTCACTTTGGTTTCCTATCCCCCTTTCTGATTCTTTTGGTAACTGGGCTGCTGTGTCCATGAGCTACATAATTCTGCAAAAGCGAAGTTCAGTTTCCAGGCTCATGCATAATTAGCTATAACTACTTCCCATCATCATTTCAGCATGAAGATATTCATCTTCCAATAATCTTTTTTTATGGGTGAGCAAATGGGTTCTCTCCTTTGCAAGAGATGTTACTATGATTCAGAATTGAGGTGTTTTTGAATCCGTGAATTAGGTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAGGTTTAAACTCGATTCATTATCTTTATTGCTTTCATATTATTTTAAGACATAGATAATGCTGACTCTTTCATGTCATTTCCTAATATAGAAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAGGTAAGTTTGTTGCTTTCAATTTATATTAGGACAGATATTATGTTAATTTTAAGAATGAAAATGTCTTCTTCACCATTACTGGATCATTCTGCTTCAGTCTGTCTTATCTCTCTCTCTCTCTCTCTCCTCCTTTTCTTCTCGAGAATCACTATCTTGCCTATATACTTAACTGAGAATATTTTACTCGAGGTTGCCTTTTGATCAGTGTGGGAGGACTTGTTCTATTTATTAGAATTCTTTCTATTAGGTTTTAGCAACTGGAGCAATTCTTCTGGTATTTCAAGCTTCTAAGTTCTATTGTCTTGCACTCTATTATCAGAGAGTGGGAGGACTTGTTCTATTTGAAATTAATCTATTTATTAGAGATCCTTCCATTAGTGCTCTAGTTTTAGTAGTTGGAGTAATTTTTCTGGTATTTCAAGATTCAAAGATCTATTGTCTTGTATTTGTACTTATATACAATGAATTTAGCTGGCTAATTCATTATATACATCTACAAGGGAAAATCTTCAATGCTTTGCATTCTATTGCATCATAATCATGCATGTGTTAAGCAAAAAAAAAAAGAGAAGCTCAAATTTCTGGAATTTTTTGCTAAAATTTTCCTTTGAAGTAGGGCCTGATGGTGCATGGTTCTGTCAGCATTTTTTCTGAAGTAATTTTTCTCAACAAATTTGTACAAGAGATTCTCAAGCACTTTTAGTTTTTATAGAAAATATTTCATGAGGACTGAAGTATTATTTGAATTTTGTTGAGAGAAGTAGTTATCCTGAAATGCTTCATCTTTTATATTCTTGCTCAAGAAGAACCATTTTTTTTTTCAGTTTAAGTTGCCGTTCTATCCTTTGATGAGGGGAGAGAAGGAGGGAATGAATCTTTTGTTTTGATGATTATTGGTTTCCCCCTCTTTTATGTGTGTGTTTTTAAGATAACCTGCTTGATCAGACGTCAAAAATCTTGTCCAGAAACTGAAGGGACTTATTCTTATTTCTCTCTAATGATTACTTGATAATGTTGCTTTCCAGGTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG</genome_strand>
        <mrna_strand>AGAATATTTTGAAGATGTGGATTGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTTAGGGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAAACACTCGTCCGTGCTATAAG................................................................................................................................................................................................................................GGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAA........................................................................................................AAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG........................................................................................AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9030" PGL_stop="11931"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9030" e_stop="9113"/>
            <exon e_start="9195" e_stop="9323"/>
            <exon e_start="9875" e_stop="10819"/>
            <exon e_start="11558" e_stop="11931"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9030" e_stop="9113" e_length="84"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9114" i_stop="9194" i_length="81"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9195" e_stop="9323" e_length="129"/>
          </exon>
          <intron i_serial="2" don_prob="0.955" acc_prob="0.997">
            <gDNA_intron_boundary i_start="9324" i_stop="9874" i_length="551"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9875" e_stop="10819" e_length="945"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="10820" i_stop="11557" i_length="738"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11558" e_stop="11931" e_length="374"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9030" stop="9113"/>
              <exon start="9195" stop="9323"/>
              <exon start="9875" stop="10819"/>
              <exon start="11558" stop="11931"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315358" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAATGGTGCACTTATTATACGTCCAGCAAATAAAACTAATTATCCTTTTCCTAGACCTACTGCTGAAATTCCCATCATATTAG : GGGAGTGGTGGAAAAGTGATGTACAAGCAGTTGTGAATGAGTTTCTTACAAGTGGAGCAGATGCAAATAAATCTGATGCATTTCTTATAAATGGTCAACCAGGAGATTTATATCCTTGCTCAACAAATG : ACACATTCAAACTAACGGTGGAGAAAAATAAGACATATTTGCTCAGAATTGTTAACGCCGTAATGAATAATCTCATGTTTTTCTCCGTTGCAAATCACCAACTCACCGTCGTAGGAACTGACGGTGCGTACGTTAAACCGTTCAAGTCAAATTACATCACAATTTCCCCGGGTGAAACTATTGATGTTTTACTCGAAGCAAATCAAAACCCTAACCACTATTATATGGGCGCGAAAGCCTACAATAGCGTAGTCGGAGTTGATTTTAACAACATAACCACCACCGCCATCGTTCAGTATCGTGGAAATTACTCCACTTCATCACCACCCATCCTCCCCGATCTCCCGAATTTCGACGATACGAACGCATCGTTTAATTTCACTAGGTCATTAAAAAGCCTAGCCGATAAAGGACACCCTATTGACGTACCATTAAACGTTACAACCAATTTATTGTTCACATTTTCCGTAAATACCTTACCTTGCGAGGATGAATCGTGTAGTGGACCTAACGGGGATCGATTCGCGGCTAGCGTGAATAATATAAGCTTTGTGTTACCTCGTATCGATATATTAGAAGCTTATTATAAAAATATTCAAGGGGTTTATCGAGATGAATTTCCTAGTTTTCCGCCTTTAAATTTTAATTTTACGGGTGATTCTCTACCCGTGGAATTACAACGTCCCGATCGTAGAACGGAGGTTCATGTTCTTGAATATGGAACACATGTAGAGATTGTGTTACAAGGAACTAGTTTATTAGGTGGAGTTGATCATCCAATTCATTTACATGGATATAGTTTTTATGTTGTTGGATCTGGATTTGGAAATTTTGACAAAGATAAAGACCCTTTGAATTATAATCTTGTTGATCCACCTCTTCAGAATACTATTGCTGTTGTTAGAAATGGATGGGCTGCCATTAGGTTCAAAGCTGATAATCCAG : GAGTATGGTTTATGCATTGTCATTTAGAACGTCACGTAAGTTGGGGAATGGAAATGGCATTTATTGTGAAAGATGGAAAAGGCTCAGAAGAAAAATTGCTTCCTCCTCCTCCTGATATGCCTCAATGTTGAATTTAAATATACCTCACATTTAACTATAATTTATTTTTAATTTTTGGAACATACTCTAACGAGGGGAGAAAGAAAAAATGTATTTGCTTATTGATTTTATTAATTCATTACTATGATATATATAGCTTGGATATATATATTTGTATTTGCTCTTCTTTTTTTTTATGTAATAAAATTCATATTTTATATAGCTTATTGGAGCTATATTTAATCATGATAATAATAATGTAAATCTTGTTTTAA</gDNA_template>
            <first_frame> L  M  V  H  L  L  Y  V  Q  Q  I  K  L  I  I  L  F  L  D  L  L  L  K  F  P  S  Y  *  :  G  S  G  G  K  V  M  Y  K  Q  L  *  M  S  F  L  Q  V  E  Q  M  Q  I  N  L  M  H  F  L  *  M  V  N  Q  E  I  Y  I  L  A  Q  Q  M  :  T  H  S  N  *  R  W  R  K  I  R  H  I  C  S  E  L  L  T  P  *  *  I  I  S  C  F  S  P  L  Q  I  T  N  S  P  S  *  E  L  T  V  R  T  L  N  R  S  S  Q  I  T  S  Q  F  P  R  V  K  L  L  M  F  Y  S  K  Q  I  K  T  L  T  T  I  I  W  A  R  K  P  T  I  A  *  S  E  L  I  L  T  T  *  P  P  P  P  S  F  S  I  V  E  I  T  P  L  H  H  H  P  S  S  P  I  S  R  I  S  T  I  R  T  H  R  L  I  S  L  G  H  *  K  A  *  P  I  K  D  T  L  L  T  Y  H  *  T  L  Q  P  I  Y  C  S  H  F  P  *  I  P  Y  L  A  R  M  N  R  V  V  D  L  T  G  I  D  S  R  L  A  *  I  I  *  A  L  C  Y  L  V  S  I  Y  *  K  L  I  I  K  I  F  K  G  F  I  E  M  N  F  L  V  F  R  L  *  I  L  I  L  R  V  I  L  Y  P  W  N  Y  N  V  P  I  V  E  R  R  F  M  F  L  N  M  E  H  M  *  R  L  C  Y  K  E  L  V  Y  *  V  E  L  I  I  Q  F  I  Y  M  D  I  V  F  M  L  L  D  L  D  L  E  I  L  T  K  I  K  T  L  *  I  I  I  L  L  I  H  L  F  R  I  L  L  L  L  L  E  M  D  G  L  P  L  G  S  K  L  I  I  Q  :  E  Y  G  L  C  I  V  I  *  N  V  T  *  V  G  E  W  K  W  H  L  L  *  K  M  E  K  A  Q  K  K  N  C  F  L  L  L  L  I  C  L  N  V  E  F  K  Y  T  S  H  L  T  I  I  Y  F  *  F  L  E  H  T  L  T  R  G  E  R  K  N  V  F  A  Y  *  F  Y  *  F  I  T  M  I  Y  I  A  W  I  Y  I  F  V  F  A  L  L  F  F  Y  V  I  K  F  I  F  Y  I  A  Y  W  S  Y  I  *  S  *  *  *  *  C  K  S  C  F   </first_frame>
            <second_frame>  *  W  C  T  Y  Y  T  S  S  K  *  N  *  L  S  F  S  *  T  Y  C  *  N  S  H  H  I  R :   G  V  V  E  K  *  C  T  S  S  C  E  *  V  S  Y  K  W  S  R  C  K  *  I  *  C  I  S  Y  K  W  S  T  R  R  F  I  S  L  L  N  K  * :   H  I  Q  T  N  G  G  E  K  *  D  I  F  A  Q  N  C  *  R  R  N  E  *  S  H  V  F  L  R  C  K  S  P  T  H  R  R  R  N  *  R  C  V  R  *  T  V  Q  V  K  L  H  H  N  F  P  G  *  N  Y  *  C  F  T  R  S  K  S  K  P  *  P  L  L  Y  G  R  E  S  L  Q  *  R  S  R  S  *  F  *  Q  H  N  H  H  R  H  R  S  V  S  W  K  L  L  H  F  I  T  T  H  P  P  R  S  P  E  F  R  R  Y  E  R  I  V  *  F  H  *  V  I  K  K  P  S  R  *  R  T  P  Y  *  R  T  I  K  R  Y  N  Q  F  I  V  H  I  F  R  K  Y  L  T  L  R  G  *  I  V  *  W  T  *  R  G  S  I  R  G  *  R  E  *  Y  K  L  C  V  T  S  Y  R  Y  I  R  S  L  L  *  K  Y  S  R  G  L  S  R  *  I  S  *  F  S  A  F  K  F  *  F  Y  G  *  F  S  T  R  G  I  T  T  S  R  S  *  N  G  G  S  C  S  *  I  W  N  T  C  R  D  C  V  T  R  N  *  F  I  R  W  S  *  S  S  N  S  F  T  W  I  *  F  L  C  C  W  I  W  I  W  K  F  *  Q  R  *  R  P  F  E  L  *  S  C  *  S  T  S  S  E  Y  Y  C  C  C  *  K  W  M  G  C  H  *  V  Q  S  *  *  S  R :   S  M  V  Y  A  L  S  F  R  T  S  R  K  L  G  N  G  N  G  I  Y  C  E  R  W  K  R  L  R  R  K  I  A  S  S  S  S  *  Y  A  S  M  L  N  L  N  I  P  H  I  *  L  *  F  I  F  N  F  W  N  I  L  *  R  G  E  K  E  K  M  Y  L  L  I  D  F  I  N  S  L  L  *  Y  I  *  L  G  Y  I  Y  L  Y  L  L  F  F  F  F  M  *  *  N  S  Y  F  I  *  L  I  G  A  I  F  N  H  D  N  N  N  V  N  L  V  L  </second_frame>
            <third_frame>   N  G  A  L  I  I  R  P  A  N  K  T  N  Y  P  F  P  R  P  T  A  E  I  P  I  I  L   : G  E  W  W  K  S  D  V  Q  A  V  V  N  E  F  L  T  S  G  A  D  A  N  K  S  D  A  F  L  I  N  G  Q  P  G  D  L  Y  P  C  S  T  N   : D  T  F  K  L  T  V  E  K  N  K  T  Y  L  L  R  I  V  N  A  V  M  N  N  L  M  F  F  S  V  A  N  H  Q  L  T  V  V  G  T  D  G  A  Y  V  K  P  F  K  S  N  Y  I  T  I  S  P  G  E  T  I  D  V  L  L  E  A  N  Q  N  P  N  H  Y  Y  M  G  A  K  A  Y  N  S  V  V  G  V  D  F  N  N  I  T  T  T  A  I  V  Q  Y  R  G  N  Y  S  T  S  S  P  P  I  L  P  D  L  P  N  F  D  D  T  N  A  S  F  N  F  T  R  S  L  K  S  L  A  D  K  G  H  P  I  D  V  P  L  N  V  T  T  N  L  L  F  T  F  S  V  N  T  L  P  C  E  D  E  S  C  S  G  P  N  G  D  R  F  A  A  S  V  N  N  I  S  F  V  L  P  R  I  D  I  L  E  A  Y  Y  K  N  I  Q  G  V  Y  R  D  E  F  P  S  F  P  P  L  N  F  N  F  T  G  D  S  L  P  V  E  L  Q  R  P  D  R  R  T  E  V  H  V  L  E  Y  G  T  H  V  E  I  V  L  Q  G  T  S  L  L  G  G  V  D  H  P  I  H  L  H  G  Y  S  F  Y  V  V  G  S  G  F  G  N  F  D  K  D  K  D  P  L  N  Y  N  L  V  D  P  P  L  Q  N  T  I  A  V  V  R  N  G  W  A  A  I  R  F  K  A  D  N  P   : G  V  W  F  M  H  C  H  L  E  R  H  V  S  W  G  M  E  M  A  F  I  V  K  D  G  K  G  S  E  E  K  L  L  P  P  P  P  D  M  P  Q  C  *  I  *  I  Y  L  T  F  N  Y  N  L  F  L  I  F  G  T  Y  S  N  E  G  R  K  K  K  C  I  C  L  L  I  L  L  I  H  Y  Y  D  I  Y  S  L  D  I  Y  I  C  I  C  S  S  F  F  L  C  N  K  I  H  I  L  Y  S  L  L  E  L  Y  L  I  M  I  I  I  M  *  I  L  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9032" stop="9113"/>
                    <exon start="9195" stop="9323"/>
                    <exon start="9875" stop="10819"/>
                    <exon start="11558" stop="11688"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1284</number_coding_nucleotides>
                  <number_encoded_amino_acids>428</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NGALIIRPANKTNYPFPRPTAEIPIILGEWWKSDVQAVVNEFLTSGADANKSDAFLINGQPGDLYPCSTNDTFKLTVEKNKTYLLRIVNAVMNNLMFFSVANHQLTVVGTDGAYVKPFKSNYITISPGETIDVLLEANQNPNHYYMGAKAYNSVVGVDFNNITTTAIVQYRGNYSTSSPPILPDLPNFDDTNASFNFTRSLKSLADKGHPIDVPLNVTTNLLFTFSVNTLPCEDESCSGPNGDRFAASVNNISFVLPRIDILEAYYKNIQGVYRDEFPSFPPLNFNFTGDSLPVELQRPDRRTEVHVLEYGTHVEIVLQGTSLLGGVDHPIHLHGYSFYVVGSGFGNFDKDKDPLNYNLVDPPLQNTIAVVRNGWAAIRFKADNPGVWFMHCHLERHVSWGMEMAFIVKDGKGSEEKLLPPPPDMPQC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11695" stop="11919"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYLTFNYNLFLIFGTYSNEGRKKKCICLLILLIHYYDIYSLDIYICICSSFFLCNKIHILYSLLELYLIMIIIM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14183" PGL_stop="16525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14183" e_stop="14406"/>
            <exon e_start="15165" e_stop="15203"/>
            <exon e_start="15428" e_stop="15516"/>
            <exon e_start="15596" e_stop="15686"/>
            <exon e_start="16279" e_stop="16368"/>
            <exon e_start="16464" e_stop="16525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.891" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14183" e_stop="14406" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.995">
            <gDNA_intron_boundary i_start="14407" i_stop="15164" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15165" e_stop="15203" e_length="39"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.965">
            <gDNA_intron_boundary i_start="15204" i_stop="15427" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15428" e_stop="15516" e_length="89"/>
          </exon>
          <intron i_serial="3" don_prob="0.982" acc_prob="0.978">
            <gDNA_intron_boundary i_start="15517" i_stop="15595" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="15596" e_stop="15686" e_length="91"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.982">
            <gDNA_intron_boundary i_start="15687" i_stop="16278" i_length="592"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="16279" e_stop="16368" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.985" acc_prob="0.891">
            <gDNA_intron_boundary i_start="16369" i_stop="16463" i_length="95"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="16464" e_stop="16525" e_length="62"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14183" stop="14406"/>
              <exon start="15165" stop="15203"/>
              <exon start="15428" stop="15516"/>
              <exon start="15596" stop="15686"/>
              <exon start="16279" stop="16368"/>
              <exon start="16464" stop="16525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345085" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCGAGATCCCTATATACTCCATCTTCAATTTCAATTCAAACATTCAAAATTTTCTCAGTGAATTTAGCTGTGAGATTTGTAAATAGTTGCGAAAATGATGGCTGATGATCTCGGCGTTGAGGCGAAGGAAGCCTCCGTTCGTGAGGTCGCTAAGCTATTGCCTTTACCTGAGCTTTTACAGTCTATTTCCTCGATCAAAGCCGATTATATTGCTCGTCAACAG : GCAAATGATGCACAACTTAGTACAATGGTCGCTGAACAG : GTTGAGCAAGCTCAAGGTGGTCTGCAATCACTTTCTTTATCTCAGAAGACTATAAATCAGCTCCGAGAAAACTTCCTTTCTATTGAAAA : GCTTTGTCAAGAGTGCCAAACTTTAATCGAAAATCATGACCAGATAAAAATTCTCAGTAACACCAGGAATAACTTGAACACTACTCTGAAG : GATGTGGAGGGGATGATGTCAATTTCGGTAGAGGCGTCTGAAGCACGGGATTCTCTTAGAGATGATAAGGAACTAATTAACACCTATGAA : AGGTTAACTGCTCTTGATGGAAAGCGAAGGTTCGCGCTAGCTGCTGCAGGGTCTCATAAAGA</gDNA_template>
            <first_frame> F  E  I  P  I  Y  S  I  F  N  F  N  S  N  I  Q  N  F  L  S  E  F  S  C  E  I  C  K  *  L  R  K  *  W  L  M  I  S  A  L  R  R  R  K  P  P  F  V  R  S  L  S  Y  C  L  Y  L  S  F  Y  S  L  F  P  R  S  K  P  I  I  L  L  V  N  R :   Q  M  M  H  N  L  V  Q  W  S  L  N  R :   L  S  K  L  K  V  V  C  N  H  F  L  Y  L  R  R  L  *  I  S  S  E  K  T  S  F  L  L  K   : S  F  V  K  S  A  K  L  *  S  K  I  M  T  R  *  K  F  S  V  T  P  G  I  T  *  T  L  L  *  R :   M  W  R  G  *  C  Q  F  R  *  R  R  L  K  H  G  I  L  L  E  M  I  R  N  *  L  T  P  M  K :   G  *  L  L  L  M  E  S  E  G  S  R  *  L  L  Q  G  L  I  K  </first_frame>
            <second_frame>  S  R  S  L  Y  T  P  S  S  I  S  I  Q  T  F  K  I  F  S  V  N  L  A  V  R  F  V  N  S  C  E  N  D  G  *  *  S  R  R  *  G  E  G  S  L  R  S  *  G  R  *  A  I  A  F  T  *  A  F  T  V  Y  F  L  D  Q  S  R  L  Y  C  S  S  T   : G  K  *  C  T  T  *  Y  N  G  R  *  T   : G  *  A  S  S  R  W  S  A  I  T  F  F  I  S  E  D  Y  K  S  A  P  R  K  L  P  F  Y  *  K  :  A  L  S  R  V  P  N  F  N  R  K  S  *  P  D  K  N  S  Q  *  H  Q  E  *  L  E  H  Y  S  E   : G  C  G  G  D  D  V  N  F  G  R  G  V  *  S  T  G  F  S  *  R  *  *  G  T  N  *  H  L  *   : K  V  N  C  S  *  W  K  A  K  V  R  A  S  C  C  R  V  S  *  R </second_frame>
            <third_frame>   R  D  P  Y  I  L  H  L  Q  F  Q  F  K  H  S  K  F  S  Q  *  I  *  L  *  D  L  *  I  V  A  K  M  M  A  D  D  L  G  V  E  A  K  E  A  S  V  R  E  V  A  K  L  L  P  L  P  E  L  L  Q  S  I  S  S  I  K  A  D  Y  I  A  R  Q  Q  :  A  N  D  A  Q  L  S  T  M  V  A  E  Q  :  V  E  Q  A  Q  G  G  L  Q  S  L  S  L  S  Q  K  T  I  N  Q  L  R  E  N  F  L  S  I  E  K :   L  C  Q  E  C  Q  T  L  I  E  N  H  D  Q  I  K  I  L  S  N  T  R  N  N  L  N  T  T  L  K  :  D  V  E  G  M  M  S  I  S  V  E  A  S  E  A  R  D  S  L  R  D  D  K  E  L  I  N  T  Y  E  :  R  L  T  A  L  D  G  K  R  R  F  A  L  A  A  A  G  S  H  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14266" stop="14406"/>
                    <exon start="15165" stop="15203"/>
                    <exon start="15428" stop="15516"/>
                    <exon start="15596" stop="15686"/>
                    <exon start="16279" stop="16368"/>
                    <exon start="16464" stop="16523"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVAKMMADDLGVEAKEASVREVAKLLPLPELLQSISSIKADYIARQQANDAQLSTMVAEQVEQAQGGLQSLSLSQKTINQLRENFLSIEKLCQECQTLIENHDQIKILSNTRNNLNTTLKDVEGMMSISVEASEARDSLRDDKELINTYERLTALDGKRRFALAAAGSHK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="17080" PGL_stop="23072"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17080" e_stop="17172"/>
            <exon e_start="17833" e_stop="17859"/>
            <exon e_start="18084" e_stop="18191"/>
            <exon e_start="18296" e_stop="18458"/>
            <exon e_start="19583" e_stop="19638"/>
            <exon e_start="20363" e_stop="20471"/>
            <exon e_start="21555" e_stop="21695"/>
            <exon e_start="21784" e_stop="21963"/>
            <exon e_start="22989" e_stop="23072"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.998" e_score="0.968"/>
          <exon-intron don_prob="0.993" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.750" acc_prob="0.899" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="0.930" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="17080" e_stop="17172" e_length="93"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17173" i_stop="17832" i_length="660"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="17833" e_stop="17859" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.994">
            <gDNA_intron_boundary i_start="17860" i_stop="18083" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="18084" e_stop="18191" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.985">
            <gDNA_intron_boundary i_start="18192" i_stop="18295" i_length="104"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="18296" e_stop="18458" e_length="163"/>
          </exon>
          <intron i_serial="4" don_prob="0.750" acc_prob="0.899">
            <gDNA_intron_boundary i_start="18459" i_stop="19582" i_length="1124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="19583" e_stop="19638" e_length="56"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.955">
            <gDNA_intron_boundary i_start="19639" i_stop="20362" i_length="724"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="20363" e_stop="20471" e_length="109"/>
          </exon>
          <intron i_serial="6" don_prob="0.889" acc_prob="0.930">
            <gDNA_intron_boundary i_start="20472" i_stop="21554" i_length="1083"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="21555" e_stop="21695" e_length="141"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="21696" i_stop="21783" i_length="88"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="21784" e_stop="21963" e_length="180"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21964" i_stop="22988" i_length="1025"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="22989" e_stop="23072" e_length="84"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17080" stop="17172"/>
              <exon start="17833" stop="17859"/>
              <exon start="18084" stop="18191"/>
              <exon start="18296" stop="18458"/>
              <exon start="19583" stop="19638"/>
              <exon start="20363" stop="20471"/>
              <exon start="21555" stop="21695"/>
              <exon start="21784" stop="21963"/>
              <exon start="22989" stop="23072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAATATTTTGAAGATGTGGATAGAACATGGGAGACGTTTGAGAAGACACTGTGGGCCCATATTGCAAATTTCTCCAAACTGGCTAAGGATAG : CCCACAAACACTCGTCCGTGCTATAAG : GGTTGTTGAAATGCAAGAAATCCTAGATCAACAACTCGCAGAAGAAGCAGCTGAGGCTGAGGGAGGTGGTGCTATGGCTTCAGTCGCAAATCCTCGAAGAAATGCCAA : AAAAACAACTTCTTCTAAAAATCTCACACAGCAGAAGTTGAAGGCTCAGGGAAAAGGCTACAAGGACAAATGTTATGAAAGTATAAGGAAGTCTGTTGAAGCACGTTTTGACAAATTGCTCGATGAGCAAGACCTTAAAACAGCTATAGAGGAAGCTAGAGTG : ATAGGAGAAGAGCTTGGAGAGATATATGACTATGTGGCTCCTTGTTTTCCTCCAAG : ATATGAAGTTTTCCAGCTCATGGTAAATCTTTATACAGAGAGATTTGTTCAGTGGCTGAGAAAGATGAGTGATCAAGCTAGTAATATGACAAATATAGAGATTTTAAAG : GTAACAGGTTGGGTGGTTGATTACCAAGAAAGTCTAATTGAGCTTGGAGTTGATGATTCTTTAGCTCAAGTTTGCTCAGAGAGTGGTGCAATGGATCCTCTCATGAATGCGTATGTTGAGAGAATGCAAGCTACAACAAAG : AAATGGTACTTGAATATCCTAGAGGCAGACAAAGTACAGCCACCTAAAAAGACTGATGATGGGAAACTATATACACCTGCCGCCGTTGACTTATTTAGGATTCTGGGGGAGCAGGTGCAAATTGTGCGAGAAAATAGCACTGATGTCATGTTATACAGGATCGCTTTGGCTCTCATTCAG : GTAATGATTGATTTTCAAGCAGCTGAGAGGAAGAGATTGGAGGAACCTGCTTCTGAAATTGGTCTGGAATCCCTATGTGCAATG</gDNA_template>
            <first_frame> R  I  F  *  R  C  G  *  N  M  G  D  V  *  E  D  T  V  G  P  Y  C  K  F  L  Q  T  G  *  G  *  :  P  T  N  T  R  P  C  Y  K  :  G  C  *  N  A  R  N  P  R  S  T  T  R  R  R  S  S  *  G  *  G  R  W  C  Y  G  F  S  R  K  S  S  K  K  C  Q  :  K  N  N  F  F  *  K  S  H  T  A  E  V  E  G  S  G  K  R  L  Q  G  Q  M  L  *  K  Y  K  E  V  C  *  S  T  F  *  Q  I  A  R  *  A  R  P  *  N  S  Y  R  G  S  *  S   : D  R  R  R  A  W  R  D  I  *  L  C  G  S  L  F  S  S  K  :  I  *  S  F  P  A  H  G  K  S  L  Y  R  E  I  C  S  V  A  E  K  D  E  *  S  S  *  *  Y  D  K  Y  R  D  F  K   : G  N  R  L  G  G  *  L  P  R  K  S  N  *  A  W  S  *  *  F  F  S  S  S  L  L  R  E  W  C  N  G  S  S  H  E  C  V  C  *  E  N  A  S  Y  N  K   : E  M  V  L  E  Y  P  R  G  R  Q  S  T  A  T  *  K  D  *  *  W  E  T  I  Y  T  C  R  R  *  L  I  *  D  S  G  G  A  G  A  N  C  A  R  K  *  H  *  C  H  V  I  Q  D  R  F  G  S  H  S   : G  N  D  *  F  S  S  S  *  E  E  E  I  G  G  T  C  F  *  N  W  S  G  I  P  M  C  N  </first_frame>
            <second_frame>  E  Y  F  E  D  V  D  R  T  W  E  T  F  E  K  T  L  W  A  H  I  A  N  F  S  K  L  A  K  D  S :   P  Q  T  L  V  R  A  I  R :   V  V  E  M  Q  E  I  L  D  Q  Q  L  A  E  E  A  A  E  A  E  G  G  G  A  M  A  S  V  A  N  P  R  R  N  A  K :   K  T  T  S  S  K  N  L  T  Q  Q  K  L  K  A  Q  G  K  G  Y  K  D  K  C  Y  E  S  I  R  K  S  V  E  A  R  F  D  K  L  L  D  E  Q  D  L  K  T  A  I  E  E  A  R  V  :  I  G  E  E  L  G  E  I  Y  D  Y  V  A  P  C  F  P  P  R :   Y  E  V  F  Q  L  M  V  N  L  Y  T  E  R  F  V  Q  W  L  R  K  M  S  D  Q  A  S  N  M  T  N  I  E  I  L  K  :  V  T  G  W  V  V  D  Y  Q  E  S  L  I  E  L  G  V  D  D  S  L  A  Q  V  C  S  E  S  G  A  M  D  P  L  M  N  A  Y  V  E  R  M  Q  A  T  T  K  :  K  W  Y  L  N  I  L  E  A  D  K  V  Q  P  P  K  K  T  D  D  G  K  L  Y  T  P  A  A  V  D  L  F  R  I  L  G  E  Q  V  Q  I  V  R  E  N  S  T  D  V  M  L  Y  R  I  A  L  A  L  I  Q  :  V  M  I  D  F  Q  A  A  E  R  K  R  L  E  E  P  A  S  E  I  G  L  E  S  L  C  A  M </second_frame>
            <third_frame>   N  I  L  K  M  W  I  E  H  G  R  R  L  R  R  H  C  G  P  I  L  Q  I  S  P  N  W  L  R  I   : A  H  K  H  S  S  V  L  *   : G  L  L  K  C  K  K  S  *  I  N  N  S  Q  K  K  Q  L  R  L  R  E  V  V  L  W  L  Q  S  Q  I  L  E  E  M  P   : K  K  Q  L  L  L  K  I  S  H  S  R  S  *  R  L  R  E  K  A  T  R  T  N  V  M  K  V  *  G  S  L  L  K  H  V  L  T  N  C  S  M  S  K  T  L  K  Q  L  *  R  K  L  E  * :   *  E  K  S  L  E  R  Y  M  T  M  W  L  L  V  F  L  Q   : D  M  K  F  S  S  S  W  *  I  F  I  Q  R  D  L  F  S  G  *  E  R  *  V  I  K  L  V  I  *  Q  I  *  R  F  *  R :   *  Q  V  G  W  L  I  T  K  K  V  *  L  S  L  E  L  M  I  L  *  L  K  F  A  Q  R  V  V  Q  W  I  L  S  *  M  R  M  L  R  E  C  K  L  Q  Q  R :   N  G  T  *  I  S  *  R  Q  T  K  Y  S  H  L  K  R  L  M  M  G  N  Y  I  H  L  P  P  L  T  Y  L  G  F  W  G  S  R  C  K  L  C  E  K  I  A  L  M  S  C  Y  T  G  S  L  W  L  S  F  R :   *  *  L  I  F  K  Q  L  R  G  R  D  W  R  N  L  L  L  K  L  V  W  N  P  Y  V  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0149O17.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17081" stop="17172"/>
                    <exon start="17833" stop="17859"/>
                    <exon start="18084" stop="18191"/>
                    <exon start="18296" stop="18458"/>
                    <exon start="19583" stop="19638"/>
                    <exon start="20363" stop="20471"/>
                    <exon start="21555" stop="21695"/>
                    <exon start="21784" stop="21963"/>
                    <exon start="22989" stop="23072"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYFEDVDRTWETFEKTLWAHIANFSKLAKDSPQTLVRAIRVVEMQEILDQQLAEEAAEAEGGGAMASVANPRRNAKKTTSSKNLTQQKLKAQGKGYKDKCYESIRKSVEARFDKLLDEQDLKTAIEEARVIGEELGEIYDYVAPCFPPRYEVFQLMVNLYTERFVQWLRKMSDQASNMTNIEILKVTGWVVDYQESLIELGVDDSLAQVCSESGAMDPLMNAYVERMQATTKKWYLNILEADKVQPPKKTDDGKLYTPAAVDLFRILGEQVQIVRENSTDVMLYRIALALIQVMIDFQAAERKRLEEPASEIGLESLCAM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 3 chains have been computed
$ 
$ memory statistics:
$ 5304 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1768 bytes was the average size of a spliced alignment
$ 8392 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2797 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 3 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 11:42:31
-->
