<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:26:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321142" ref_strand="+" ref_description="SGN-U321142        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperone protein dnaJ-related, contains Pfam PF00684 : DnaJ central domain (4 repeats); similar to bundle sheath defective protein 2 (GI:4732091) (Zea mays) | chr1:28425771-28426880 REVERSE | Aliases: F10A5.12, F10A5_12(evalue: 2e-57, score=219) genbank/nr: gi|15222330|ref|NP_177698.1| expressed protein [Arabidopsis thaliana] gi|26450801|dbj|BAC42509.1| unknown protein [Arabidopsis thaliana] gi|27311545|gb|AAO00738.1| unknown protein [Arabidopsis thaliana] gi|30102874|gb|AAP21355.1| At1g75690 [Arabidopsis thaliana](evalue: 1e-55, score=219)">
      <seq>gatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcagaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaagttgagcaatacatgatttcaataccagctttgtccaattgctagatgttgtaaatgaaattgagcacctgtgtgtattgcattttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8280" stop="4705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7980" g_stop="7765" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7638" g_stop="7555" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="300" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="352" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="509" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5301" g_stop="5006" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="805" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="806" polyA_stop="815"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U321142" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7980" e_stop="7765"/>
          <exon e_start="7638" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5006"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</genome_strand>
        <mrna_strand>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG..............................................................................................................................GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U337301" ref_strand="+" ref_description="SGN-U337301        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chaperone protein dnaJ-related, contains Pfam PF00684 : DnaJ central domain (4 repeats); similar to bundle sheath defective protein 2 (GI:4732091) (Zea mays) | chr1:28425771-28426880 REVERSE | Aliases: F10A5.12, F10A5_12(evalue: 1e-51, score=200) genbank/nr: gi|15222330|ref|NP_177698.1| expressed protein [Arabidopsis thaliana] gi|26450801|dbj|BAC42509.1| unknown protein [Arabidopsis thaliana] gi|27311545|gb|AAO00738.1| unknown protein [Arabidopsis thaliana] gi|30102874|gb|AAP21355.1| At1g75690 [Arabidopsis thaliana](evalue: 1e-49, score=200)">
      <seq>accagttggtgtcagtttcagaatttcttgtttttctgattctgatgatagcaaaatccatagctaaactaaacattgaaagaaaagggaggaaatgttaacagcaccttcactttcccgctttaagtctccatttatcagctcacctcttaagcttcctactctttcttcttcttttttcactcagaaatttcatcaaacatgtcgtaggcgaaattcgtacccatgtattaaagctgtggatcttgatcaaaacacggttcttttctttctcaagttctctttttgtgtttttctccatgattattgtttaatttcagttgatctcatatgggttttttttattttttttttatttttggggaaattgtgatgtacttggcaggtgatagcaattacagttggggtgctcagtgttgctattggagttggaattccagttttttatgagacccaaattgataatgctgcaaaaagagagaacactcagccctgcttcccctgcactggcactggtgctcaaaaatgcagattttgcatgggtactggcagtgtgacggtggagcttggagggggtgagacagaagtctctcggtgcatcaattgtgacggtgctggtggtttgacttgcacaacatgtcaaggcagtggcattcaacctcggtaccttgatcgcagggaattcaaggacgatgattagatatggaagaatactcagcatggatgccacaacttgtttattgtctagaagacctgtcattttgacctgaatatattgacacaaaattgtgtaaaattcatttatgttcatcccctctctctgcctttctcagttttcacatattcctttcaccttctgttcttacatgtaatctttaacaaggttgagcaatacctgattttcataaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="8323" stop="4774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8023" g_stop="7555" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="7255" g_stop="7204" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="521" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="5608" g_stop="5452" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="678" r_length="157" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="5301" g_stop="5079" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="679" r_stop="902" r_length="224" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="905" polyA_stop="922"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U337301" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U337301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8023" e_stop="7555"/>
          <exon e_start="7255" e_stop="7204"/>
          <exon e_start="5608" e_stop="5452"/>
          <exon e_start="5301" e_stop="5079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCTGTAAGTTTTAAGATTTAATTTTATGAAATATGCTCTTTTTTGTACCTTTCTTGATTATCCGGGATGCTACTTACGGGTTCTGCAGAGCTCAGTTGCTTGGTACAACTACAGTTTTTGTTACATTTCATTTCTCGAGAGTCGTTTGACTAATTTTCTAAGCTAAAGTATATAAGATTAATTTGATATTTTAAAATTAACTATGTTTGATATATAACTCTGTTTTCCTGGTCATTTTATTGCTTGACAATTCCTGCGATATATATCTCCGTTTTCATAGTTAAAGAATGTACATTTTGTAGGCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTCGTAAGTATTTCTTAAACTAGACTTTCCATTCTGTTGTTTCTTTATATGTTCGATCCGATAAGTACAAATGAGCCTAGAGGTATATTGTTATGTCCACAAGTGTACTTAAAATACATAATTGGTGGATGGCACTCAATTAAGAAATTTGAGCTGAATGGCTGCCAAAGAGCCGCAGAATTGTATTTCGGCTTAATTAAACTATATTGAGACAATTGCAATAAGTGAGAGTTTCCTGTTTGCCTTTGAACCCCCAGAACAGTTTCTTTTGAAAATATTTACTGGAAGCCAGTAGTTCTTGTTGTTGAAGGAGTGCATACATTGGTTCAACAACAACAAAAGTAGAGCCCGTGTTGTTGTATTTCTGATTTCCAGGTAAAGTTTTATTTGCCGTTTGCAGTGAGATATGGGAGAATATAGATTGTAGAATAAGGGCAGAAGTTTCAATATCCTCAAGATAAAACTATGAAGTACATGTTCTGATTTGTGCTTGGCTTCAGTTTTAGATGCTGTAGTACTTTCTGATGGTTTTTGGCCCATGAAGAACATTCATCAATCCTTGTTATCACTCGATTCTTTCTTACAAGTCTCAGGAAAATAACTCTTATGGTTCCTTCCTATATTCCAGTTTAAGACATAACTTGCACTTTGCTACGAATCTAGTCATTTGCTTGCCAGCCAAGAGAAACTAGACTATGGTTTGAGCTATCCACATCTCTTTATATTAGTGATGTTTTTGCTTGTATGCGTCATTTATCAACTTCCGTAAGTCCGAGCAAAGACACTAAACCCACATGTCAATTGCTTCCATGGATCTTAAGTTGACTTATTGAAATGGTCTAGTTTTGTATCACTTAAAATTGACATGTATGACTTGTTGATCAAAATATCTGACATGATGGATAGAGCAAATTGTGCATTTCTTAGAAATCCTTCCAAAATGCTCATAGTATGGATCTAGGATTTATTTTTTAATCACTTAATTCGTATGCCACTTCAAAGATGTCATTGTAGGTTGACGCCTATCCCTTAGCATGTCTCTAGTGCCTTTAAGGAATTTCTGGTTGCAGCTACTTACATCAATGACCAATTACCAATGAGCTTCTAGAAAATCCATGGCTCCGATCCAACAATTTTATTCAACTTGCAATTTACTCCTGGCTTGACTTAAATTTCTCCTTCTCATAGATACCGCCTTTGTAATTGGGAAGTGTTCTAATCCTGGCCCTAAGGTGGTTCTATCTGCTGTGGTGTTTTTGATCATCGAAGAGAGCGACGAAGAGAAGGGTGATTTATGATTTGACGTTTTTGTTTTTCTAAAATTTGCTAGGTGAATAATCTTGAAGTTTCCACTTTAAATATCAAAGTGAATCTTCGTTGTCATGTGCCATCAATTAAGATTGCATGTATAGACATTACATCACCCAGTAAAAGAGGAGAATTGAGTTATTGAACCATACAATCTTACTGAGGTTCGATTATTCAAAAAGTAGTCAGTAGATTGTCTGATCAAAGACTGTAGAGCCAGTTAATCCTTAAAACCTAACATTTTTTGAGACTGACTTAGAGCTAATACTTATGAAGGGCTTATATTGCAGAGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAGGTGAGTTATCATTCTTTACACCTCTTACTACTACACACACAAAAAGAAAACATAGAATCGCGACTTCTGTTTGCATTTTGTATGATAAGGAGAAGTTAGAACTCATTCTTGGAGAGACAAATACTGAGAGTGTCATCTTCTTCTCGACAGGGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAA-GTTGAGCAATACATGATTT</genome_strand>
        <mrna_strand>ACCAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT...........................................................................................................................................................................................................................................................................................................GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG......................................................................................................................................................GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGGTTGAGCAATACCTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319020" ref_strand="+" ref_description="SGN-U319020        Tomato 200607 #1 [14 ESTs aligned] genbank/nr: hypothetical(evalue: 7e-09, score=64.7)">
      <seq>gcgctcttctctctgcttcccgcttcactactgctctgcacagttgagcaaaatttctgtaaaactagactttgttaagcttatcttaaaattttcttgtattggagagcgctcttcttctgcttcccgcttactactgctctgcacaaagcagaaagagaagtagtaggtggacctgtggctgtgaggaaattacagagctcattctatggcaaagagattaatagtcatactcttttcactaaaaacttcaaaaaaatcaatctcactatcacctcagtgatgcggaagaaactgataaagaaggagactgttgttcctgacccagattaccgaattcctgttgtccttctagggttatctggtggtttattttatgtggaaaatctaccagcagcagttcctattggtcttcttggattactcctgttattccagacaacaagagtgagatttgtctttgatgatgaggctctggaggtgaaagttggggagcaactcgaggagtcaggtgaaaatgttttcgtgggtggaaagaaccgctggaaatattcttcatttgtgaactgggagctatggtggccaaactttccgattttggtttattttaaagagaaacagacaaaacccgagggacaaatacactttttcccagtgatttttaacgggaagcaactgtacgatgctatggtggagagatgtggcccttcaaaaactagcggaccaaagtagtgcaacatgagctccagggagaagacgaatatgagccaggcaaaccatacaatcagaatttgtggcaaaggtatgaagctcaacgaggttaaggaactcgtcagttgagttacaagatgtggtttaatcaattaatgtatattacctttcatgtttttacgtgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaactatatgtattcacatttggaatgtgttacaagttctagctcatatattatatcatacattttacagttctaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="11960" stop="8321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11960" g_stop="11943" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="101" r_length="17" r_score="0.667"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11942" i_stop="11668" i_length="275">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11667" g_stop="11619" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="148" r_length="47" r_score="0.939"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91">
            <donor d_prob="0.969" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11527" g_stop="11394" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="282" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10983" g_stop="10911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="355" r_length="73" r_score="0.973"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10343" g_stop="10261" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="438" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.939" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="9526" g_stop="9488" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="477" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116">
            <donor d_prob="0.986" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="9371" g_stop="9301" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="548" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67">
            <donor d_prob="0.908" d_score="1.00"/>
            <acceptor a_prob="0.812" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="9233" g_stop="9119" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="663" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76">
            <donor d_prob="0.865" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="9042" g_stop="8614" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="664" r_stop="1092" r_length="429" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U319020" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1011</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319020" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11960" e_stop="11943"/>
          <exon e_start="11667" e_stop="11619"/>
          <exon e_start="11527" e_stop="11394"/>
          <exon e_start="10983" e_stop="10911"/>
          <exon e_start="10343" e_stop="10261"/>
          <exon e_start="9526" e_stop="9488"/>
          <exon e_start="9371" e_stop="9301"/>
          <exon e_start="9233" e_stop="9119"/>
          <exon e_start="9042" e_stop="8614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCAACTTTCTCTATAGCATGTAGTTACAAATCGTAATTAGCAAACTCTAATTATAAAGCATAATTAGACTAATTTTGAGTGACTATATGCGAAAATTCCTCTTTTAAAAATTATTTTCCACCCAATTTCCGAAGCCCGCATTGAGTATTTTTGTTTGTTGACATTTTTACCCTTGAGCTTTAGACATATCAGTGGCTTGCAATGGAGCGAAACGGATAGAGCGTGGAAATGACAAAATTAAGGGAAATCATCTACAGCCTCTCACTCTTTTCAATTTCAGAGAAACTGCAATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACAGTTGAGCAAAATTTCTGTAAAATTAAACTTTGTTAAGCTTATCTTAAAATTTTCTTGTATTGTAAACTAATTTTTGTTTTGTATTTATCAGAAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTGGTCAGTTAATTCATATTTCTCTATTTTCTGTTTTTTCATTTGATCTAATTTTGCCTTTGGAATTTGAGATGATCTTATTGCTAATATAGAGAAGCCTCTGTAGTGAGGCAGAACCAATATTAGAAGTTTGGGGTTCTAAATTTGTCATGGAGCTGTCAATCAGTTTTGTTATTAGAGGTATACTTAATTTTCTAGTACAAATATAGGGTTTGTGAAGAAGCAACCCACCTAGCTCTGCCCCTGATTGTGAGATGCAGTTTATAAAGAGCATATAATATAACATAGTATGAAAGTTGATTCAAAGAAAACTAGGCTGTTATAGGGAAATGTTGGACGATTGTTATAGAGATGTTTGACTGTATCTAATTGTAGTTTCCTGGGAATTTGGGCTAATGTTCGTGGTTTGGCAGATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAGGTGCATCTTTCAATTCTCTTTATCTTTGATTAATCAACATTTTCAAATTTATAGTTGAAGTTAAACACATTGTTTGGATTGTTGTTACCTGTGGTATTGTATCGTAATGTTACTTAAGCTACGCTAAATTTTGTTGTATCGAATTATTAACTCCGTAATGTAAACTCCATATAATGCAACAACTTATTTGGTGTGATCACGTGGGCTTATCATCTTTCTTTCTTTTTTCTTTCTCATTTTGCCCTTATTTTGTATTCAATAATCATATTACTTTAAACCAAATCATAACTCTATCTCATACTCTATTTCTTTTGATAATATTATAAGTTTTATTGTTCAAATTGTTGGTACATGGTGGTCTTATGAAACAATAGGAAACAATACAATATATACATTATATTCATCAAAACAATTCAACAGAGTACATTACAATATACTACATTCTGAAACGATATGTACAACCATCCAAACAAGCTGTTGTTTGTTGAAGAATTTCCCTCGGTCCCTTCCCCATTTCATTTTTCTCTAGTGTCTTTGTTCTAATTTTTTACATTTTTGTATGAACAGGGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAGGTACCTTTTTTTTTTTAACAAATGAGATGGAGAGCACTGTAGTCATCTTATTAGAATGAGATTTTGTGTTAGTTCTGTTTTAAGCGGTTTCATCCTTCATGGCAACATTAAAAAATTATCCAGTCATCTACAAGGCACCCGTGCTTTGTGAATCATAGACATTAATGCTTTCCTTTACTTGATGCATGTTTACATGTCTAAGGTTTGTGGCTTTTAGCAAACAAAAATTGTGAGGTAGGAATTCAATGATATATACTGAACTTTTCCAACCTTAGTGTGTTGCATGAATTATACCTATAAAAGATAAGTAGGAGAGAGTTTTGCTTACATTGCCTAAAGAAACTTAAGAAAGTAATTCACAAGCCAACTTAGAGATTCTAGGTTCGAATCCCAACTACACTTTTTGTGAGATCACAACTCTAAATTGGTGGATTTCTTTTGGCAACCTGTGCTTCTGAGTTGAAGAGGCTGCTCGATGGAGAAGTTGAGATGTACATAAGCTGATGGGATGACCAATAACCCAAAAAAGAAGGAAAATAACCTCAGAATCATCTGTCAAGAGTTGAACCCCATGACATCCAAGTTATAACGGGGAGCTTCTTCTATTGCACCGGATCTAGTAACAGATCATCTGTTCATTCTGCTTATTATCTTAATTTCCTTGATCTCGTTCATTCATTTAGCATCTATCAGGCCGGCATTCCTTATTGATTCACATCGTTTTTCGCTTGCAGACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTGGTACGTATAGCATGTGGTTACATTCTTATTTGTATAAATCTGATGTAAGCAATTTATATACCATTGCATTGTCATATTAGTTGTTCTCTCTAATTGCTATGTTAACTTCGTTGCAGGAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAAGTAAGTAGAAGGCAATCCTTGCTCTAAGTCAGTTTTGCCAAATGGCTGATTCAAATGATGTGAACAGATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTTGTAAGTGTTTTTAAACTTAGAATGAGTATCTTTTGCTTTACATGTGAGGTTTAGTCTGATTAAATTTCATAAATAGAACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</genome_strand>
        <mrna_strand>CTTAAAATTTTCT-TGTA...................................................................................................................................................................................................................................................................................TTGGAGAGCGCTCTTCT-TCTGCTTCCCGCTT-ACTACTGCTCTGCACA...........................................................................................AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGACCCAGATTACCGAATTCCTGTTGTCCTTCTAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCAGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG....................................................................................................................GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA...................................................................ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT............................................................................AACGGGAAGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGGCAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTTACAAGATGTGGTTTAATCAATTAATGTATATTACCTTTCATGTTTTTACGTGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAGTTCTAGCTCATATATTATATCATACATTTTACAGTTCTAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336702" ref_strand="+" ref_description="SGN-U336702        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>cccgggctgcaggcaaaaactagcggaccaaagtattttaacatgatctccagggagaagacgaatgggagccatacaaaccatacagggcagaatttgtggcaaaggtatgaagctcaacgaggttaatgaactcgtcagttgagtcacaagatgtggtttcatcaattaatgtatattccctttcatgtttttacacgtctgtaaaatcacaaagataaactatcaatctgagtatgtgtcacaactcacaaaatcatgtattatatgtatcaccattactgtatgaaaggcggtaactggatgcaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="9296" stop="8401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8996" g_stop="8699" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="312" r_length="299" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U336702" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8996" e_stop="8699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACA-ATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACT</genome_strand>
        <mrna_strand>CAAAAACTAGCGGACCAAAGTATTTTAACATGATCTCCAGGGAGAAGACGAATGGGAGCCATACAAACCATACAGGGCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAATGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332355" ref_strand="+" ref_description="SGN-U332355        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>aaagacaaggacctcaaacaacccttgatttatgtcatcaagtacttaaccccccatggtaatttgaatatgtagtttatatacatcggaaaaaggattggttcttcaatgtacatctggcatatcttagttcattcattactgttgtccatgattttttagcatggctcgaaaagtataagggtcgtcgagtgtgtaggattgccagatgcaattaccattcattattaaatatccaaattatagtacttacgtttgtgtgaaggtgggaaaatgatcatgaatctatgaagttaagagttatcttagaggatcactgtacatacatataaacatctggttcttgagatggcttggttgatgtactgaatggtaattggaatgggactgggcttctataattgtatctcttctaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="17717" stop="18736"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18017" g_stop="18444" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="428" r_length="428" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U332355" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U332355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18017" e_stop="18444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</genome_strand>
        <mrna_strand>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345641" ref_strand="+" ref_description="SGN-U345641        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | E2F transcription factor-3 (E2F3), identical to E2F transcription factor-3 E2F3 (Arabidopsis thaliana) gi:10443853:gb:AAG17610 | chr2:15126668-15130683 FORWARD | Aliases: None(evalue: 3e-07, score=52.8) genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 4e-19, score=98.2)">
      <seq>tataagcttattcttagaagcacaacagggccgatagatttgtttctcttgagcaaacagggtaggcagcatgaggacataaccatcaaacatgacaagtccatggattcagtgtctgctgcaaaaaagatggatgatgcttacccatccccagcacatccttgctctttagattcaacagactcaaagctctcgggtgtccataaaatagtaccttctcataacagtatagatgatgattactggttgcgctcggaggaggcggttagcgcaactgctctgtggggcattgaataatctttaaaattgagcctggttacaaactccatatatggataccagaagatatacagaaataaggcttcttataaacatgtaaatatcttttgaagctaaaaagctttacatatctctagccagattatagtaagaaacaactggtttcagggaaactcctacaacttttgcgtacaactatatggttcacaggaatatcagtcttatgattaaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="20455" stop="18859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20155" g_stop="20103" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20102" i_stop="19909" i_length="194">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.650" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19908" g_stop="19734" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="228" r_length="175" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19733" i_stop="19445" i_length="289">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="19444" g_stop="19151" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="522" r_length="294" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U345641" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U345641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20155" e_stop="20103"/>
          <exon e_start="19908" e_stop="19734"/>
          <exon e_start="19444" e_stop="19151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAGGTATCTCCACTACATGACTAGCTTCTCTCCTTTTGTAACATATGGGTGTATGTATAGCTTGGCTGGTTCACTAATTCTCTTTGTGTAGTAGTAGTCTCCCCTAAAAAGAAAGTGATATTTTACTGTACAAGCAAAAAAAATAAAGAAAGAAACTTCAAGGCCCAATTAACTAACATAATTATCAACAAATGCAGCAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGTGTAAGTATATGACTGAACCCCTCTCTTTCCCTTTCGAATTTATTGGTATCTCTTCCTCTATTGCATAAGTTAAAATGCATGTGAATCAGTATGGTTAAACACCATCAGCCTTGTTGTTTTGAAGTGACTAAGTAATTCGAAGCAATGGGCTATCCCTTTTTTAATATTAACCGGCAAAGTAATCCAATTAATAAGCCGTCAATTCTTGTAACAATAGTTATTCTATAGTAGTGAATTCATATGAAAACACTGATTATAATCCACAACATGTTCTTCCCCTAAACTGCAGATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</genome_strand>
        <mrna_strand>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG..................................................................................................................................................................................................CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT.................................................................................................................................................................................................................................................................................................ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324470" ref_strand="+" ref_description="SGN-U324470        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | eukaryotic initiation factor 3 gamma subunit family protein, contains Pfam profile PF04189: Eukaryotic initiation factor 3, gamma subunit | chr2:18843459-18846234 REVERSE | Aliases: F4I18.29(evalue: 3e-151, score=532) genbank/nr: gi|18406875|ref|NP_566054.1| expressed protein [Arabidopsis thaliana] gi|7486467|pir||T02474 hypothetical protein At2g45730 [imported] - Arabidopsis thaliana gi|3386622|gb|AAC28552.1| expressed protein [Arabidopsis thaliana] gi|17473624|gb|AAL38275.1| unknown protein [Arabidopsis thaliana] gi|22136132|gb|AAM91144.1| unknown protein [Arabidopsis thaliana](evalue: 2e-149, score=532)">
      <seq>gatcgtttagggttctagggtttaaactaacagagaactgaagcttatagtgtaacttccttctctactgcttcatctaatgcttaaagattgaatttttagcagcaaaaatgtctattgaagaagcagttgatgaggattcgaagcaaaatcataatagtagattaacttatgaaggttgcaatgtattgcttgacatcaatgatggcgaccgtttagttttttctcgtcttactgctgcctcgacattgaaaattgggaataagaagtgttctcttcagcctcttataggttgtccattcgggtctctgtttcaagtggagccgggaaaagaaggaacctttttgactcgttttgttgagaatgcagaaggtaacggccttgaagaaaaagacgtggatggatctaaagacaaccgtgcgcttgttgataataatactgctcagagtctcactagtgaagatattgacgagatgcgaaagcagggagcaaaaggggatgaaatagttgaagcactcattgcaaacagtgcaacttttgagaagaagacattattttcacaagataagtatagggttaagaaacagaagaaatatgcacctcgagtacttttgaggcgcccctttgcacgaagcatttgtgaggcctacttcaagaaacatcctgaaaaaatcggattcatgcgagtggatgcactatctctactgctctccttggggaatgttactgctaatgcagatgtacttgtagtggacatgctcagtggtattcttactggtgctattgcagaacgacttggaggtactggttatgtgtgcaatacttatcgtggatcatcaccatatcctgtcgatatcacaaggatgtttaatttaagcgatgaaatctgtaaaagaatcgtgcatgcatcactgaccgacctgaattcatttcaaactggagcttcagtgtctgagggtcaggaagaaaccttacctgtcactcattctggtggtctagacgaagttagtgtgccagctgaagatggtggcatggatgtaacacctgagagagtttcttctccaataatcaagcctgttaaatctataaaagcaggtcagaaagcaaccctcgaggccatcaagtcgtggaaagaaaacggtttttccagcctaataattgctgctccggaactggacccatggggcattattaaagaagtgcttcctcttttatcattttcagctccttttgctgtttatcaccagtatgctcagcccctagctacgtgtatgcacaacctgcagattgagaaaatggcgattggattacaaatttctgaaccttggctacgtgaatatcaggtactcccatcaagaacccatccacatatgcagatgagcgcgtttggtggttatatactaagtggcacgaaaatatcgagcagtgactcccttaccagctctaactaggataaatttttttggcatctcactctgcttggttgtacatgtcgcttgacgataccattttcgtctttcgagaatattccctgttagaatagatgtagggattatcttgtctcttttctggggcagaaacaaggttactcatgttgtacttttattcattgattgatgtatgcttgcttttgtatgagcaattcttctaaatcaaaagactaaagggtctttttcctcttactttataaagtatttgaagattaagtggtaaattgtagaattatattgttgtctttcttggatcaagcaattgaagtctgttttgttgaagaaatataaaatatgtaatacaacattaacaattattcttcaactccaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="33410" stop="26781"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33111" g_stop="32868" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32713" g_stop="32586" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="372" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31576" g_stop="31468" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="481" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31029" g_stop="30948" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="563" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70">
            <donor d_prob="0.615" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30877" g_stop="30807" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="634" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="30129" g_stop="30088" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="635" r_stop="676" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29805" g_stop="29681" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="677" r_stop="801" r_length="125" r_score="0.992"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="29680" i_stop="29378" i_length="303">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="29377" g_stop="29284" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="895" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="29283" i_stop="29130" i_length="154">
            <donor d_prob="0.875" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="29129" g_stop="29063" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="962" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="29062" i_stop="28951" i_length="112">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.729" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28950" g_stop="28763" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="963" r_stop="1150" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28762" i_stop="28681" i_length="82">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="28680" g_stop="28575" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1151" r_stop="1256" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="28574" i_stop="28028" i_length="547">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="28027" g_stop="27941" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1257" r_stop="1343" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="27940" i_stop="27564" i_length="377">
            <donor d_prob="0.145" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="27563" g_stop="27084" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="1344" r_stop="1823" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1824" polyA_stop="1836"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U324470" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>1823</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33111" e_stop="32868"/>
          <exon e_start="32713" e_stop="32586"/>
          <exon e_start="31576" e_stop="31468"/>
          <exon e_start="31029" e_stop="30948"/>
          <exon e_start="30877" e_stop="30807"/>
          <exon e_start="30129" e_stop="30088"/>
          <exon e_start="29805" e_stop="29681"/>
          <exon e_start="29377" e_stop="29284"/>
          <exon e_start="29129" e_stop="29063"/>
          <exon e_start="28950" e_stop="28763"/>
          <exon e_start="28680" e_stop="28575"/>
          <exon e_start="28027" e_stop="27941"/>
          <exon e_start="27563" e_stop="27084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTCGTAAGTAATTACATCCGATTTTTTTTTGCTTCTGTCTGCTGCATTTAGTTTTGTAATTGAGATATAGTTGATTGATTTTAGTGCATAAAGATGCAGTTTTTTGTTCTGGATTATGGATTTTTGAACTGATGGAGAAGTTGTGTTGTGCATGCAGGACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAGGTATTCTTCTGATTTAGCCTTTTCATCTTCTATGAGTACTGTTTTCTCTGTTCTTCAATTAGTTATTATTACTAAGTTTATTCAACTTGGGGCGGTAGTCATTTACTGGGAGTACTTAGTTTTTGAAGTAGTCAATTACTAAAAAAGGCAGCCAGATACACTAAGCTCTTCCTATGTGCCGATCACGATGTATCATACACATCCTTACCCTCATTTCTGAAAGTGTTCTTTTTCACATCTCAGAGCCCTTGAGTTCACGTGACAGTCTGACAATTTTATGTGTAATGTAATTATATAGCATTACAGATAATAGGGCTAATCAGCCTATTATGTTTAATGGTATATACTTATAATATCTATCTGAAAGATTCTAATGCAAGGTTTTCTCAGAAAAATGCATTGCTTTGTATGGATAATCATCATAGACTCTTTTAGACTTGGAGGGAGCAAGCATGATTAACATAACTCTTTAACTTTATAACAAGGAAGATTACATGGGGTACTTAGACTTCAGTTGATGATATTTTTGCCTGTGCAAATGGCTTTTAGGGGTTGCATTTGTGGACCTTCCTGCCACATTGCAAATACCTTGTTTTTGGATAGAGCCAAAGAATGAGCTCTCGTTTTCCATGACGCATTCAAACATTTTTAGTAAAACCAGAACTAGTCTTCTTTTTAGCTTGGTTTATCCACTACAGTGTATTTCTTGCTTAAGAACCAGTTGAAGCGGGACAGAAGACTAGGATGTAGAGGTAGTATATAATTCTTTGACCAAGCTAGTATGCAAAGATAGACCAAACTAAATATGCTTATGCATCTCATGTTCAAAGGGTATCCCGGTGCACAAAGCATCCCGAGTGTCACACTGGGTTTGGGGAAGGGCCGCACCTGCAGAGTGTGATGTAGACAATCTACCCTTATACATCTCGTGTTACTTTCTCTTATTGTTCTAGTCTCTTTTTAACAAATTGTGGAATTTATAGTAACTTTTGTGCATTTTCATTATCAGGTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAAGTGAGTTTGTCTGAGGTTCATGGTTTTATGTGGTATTGTTTATTTATTTTAGTGGGCAGTTTCAAGAATTGTGGGAAAACCTTGCATAAGAGTCTTTCGAAGGCAGTTTCAAGATACTATTTTAGTGGATATTGATAATGTGTACTTTCAGTTAATTAGACGACCTCTAGGTTTGAGAACTGCAAACTAGTCTGGGATGGTGGTATGCATCATCTGCCGCTGTTTCACTCTGTTTTGGCAAATTTCATTGATATATTAACAGAAAAATTGGAGGCTTCTGAATCCAGAATTTCTATAGATCTATATTATATTTCTTCTGATATGTTTGAACAAATTTTGTTTACAAAAGAGTTCTCTCAAGCAAAAGAAAAGGCTGCAAGATTCTTAGGTTTTCATTTAGCAGTTTTGAAGAGAAGTATTAATCTGACTATGTTGCAGGCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAAGTGAGCTTGGCATTTTTGGTGTTGATTAGTTTTTCTTTGAGAAAATATGCTGACCTCTCATTGTTTGCAGGATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAGGTACACTCCTGTCTTTAAATCTCCTTTAGTTATTCTGGAGATAGACGTACTACTTCCTGATTTTTCCTTCATTTATAACTTAATCTTTGGAGAAGGGGAAGGTAGAACGAGATTGGATAATGTTTTCACTGCATTTCTTTGATATAGCTTAGTAAATAAAACTCTAAGATTGGTAATGTAATCAAAATTAAACAAGTTACTTTCATATGCTGCAAAATGTTGCACGTTCGCCCCAGGTGGAAGAAGGCAGTATTTCTTATTTGAGCAATGATCCAGTAACTGTCTATTTGTTGTAACTAGATTATACCACTTCATTCATGTGGAACACTCAGTTTTTCTGTGGATGAGTATGTCCTCGTATTGCTTTTTGATTAGTAAAGCATTTTAGGGCTTGTGGATTGTGTTTCACTTTTTATGATTTTCTTTTTTTAATTCAGGTGATAAGTAAAACATATAATGGTAGTTTTTCATTAATTTCTTCTAAGCACTATTGTTCTTCAAATCATATAATTGATTGTTCTGCATTTAATTTCTGAACTTGAAATCCCCAAGCTATTAGTGGTGATGTCAGATGTAGATAGTCGTAATACTACATTTGGTTTCTAGTTGCAAATCCCATAGTCGTTATCTTCCTCAATCTTTTCTTTAATTTCTAACATACCTCTTGCATTTTTCAGCATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGGGTAATAATATGGTCTTTTCTTGTGTTTGATCAAATATCTTCATCTGTTGTTTCTGGTTATGATTTGTCTTTTTGATGGGAGGGAAAGAAGGATAGACATTGATAACTTATTTTAGCATCAGAAAATCTTGAAATCTGATATATCCTCCTTGATGTTATTTTTCTTTGTGGTTCAGATGCTCACTGTAGTCTAATAACCCAAAGTTTCATATCTTATTCATTTTGCTTTGCATGATTCTGGGTTTACATGGGGGTTGATTTTATATCCTCTTGATTCCATCAGATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAGGTATGTATTTGTTCTTAACTGTAGTTACATTAAGGAAATCAAGGGATATTTGTGAATTGTGACCATTGCTTTATACACATAAAATTTGATCATGCAGCCTATACTAATGGGAAATTGTATCATGTCTGTGGATTATTGCTACTGATACTGATCGTATGTTTGTCATCATGATGTGAACGGCGCTGATGCTTATAGTTGTGAAACCATGTCGAACATGTTATAGACTTATAGTATTGTTAAAGAGTGTTAATTGCTATTTAAGTTAATGACTTTTTAATATTTTCATGACAATGATATTAGCAGGTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAGGTACACTTCCTTTTGCAATGAAATAGAAAAATTACCCAATTAGTGCACAGAGAAAAAAATTGTATATTTCAGTGGATAGCTTTTGTCTAAACTCTAAATATGTTTTACTGCATTCGTACTAACTATAAACTTTGCTGTTTGTGTATGTATCTAGAATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAGGTAAAACCATGTTGTAATGTCAAAAGTTGATCCTTTTTTGGTGTAAATTGTTTCTTCTGTAAATGCGTGCGTGGATGACTTTTAAACTTCTCTCTAAAACATGTTCCTGCAGGAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAGGTTTGAATTTAATCTGGGTTTTATTCTTTTCTTTGACACATAATGTTTCTCCTTCTATCTCATTTCCAATATAATATTTCAGCCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAGGTATTGTTCTTAGCTTGCCAATCTTATTTAATGTTTCTTAGCCTGCCAGGCTGCTCATTCATTGTTCACACACACAGCCCTTTCTTATTCACTTATGCAATAGCCCAACTTCTGCATTCTTTATATGTCTAGAAAAATTTTCTAAGGATGAAGTTTAGATAAACATTTTTTAATAGTAAAACCTTATGTTATTGGATTTAGGCATCCTGTAGTGAGCATGTGGTAGCAAATCAATATCCTTTTTTCTGCTCTTTAATGTCCAAAGCTGAGTAAATAAGTCGAAGAACTAAAATAGATTTTCAGAAGGTCATTCTCATTTTCCATTTGAGAGATGCAAGCATTTGAGAGGAGATCCTGCAACAGGATCACGTCACTGCTTATATTTTGGCTAGATTTTTGTTAAAAGACTCTGCTTTCTCCCATAAACTGGTGTGGATGGGTAGGTGGGCGGGCTGTTGTGTCAATAATTGGAGCGCACTCTTTGTCACATCACCTTCCCTTTCTGTTGGAAAAATAAGACAAAACTAATCCTTTGTTTTCATTGCAGCCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAGGTTTGTTTTAACTAAACCGAAACGACCCCGAAAAGGGGATCTGACCACTTACATGATTACTTAACTTTATATTTATTTGCATTCTCCAGGGAGATTCTGTCAAGCAGATAATAGAAATTTAACTATAGCTCCACTTGAAGTAGTTTGACATGTGTACACTTTTTTTTTTTTTACTGACAACTTCTTTTTCTGTACTTGTGATCAGAATTTAGGATCTAAAGTCAATAGGTTTAAACTGAGTCTAATACACACACAAAAACTTGCATGTTTATTTGTGGATCGAACCAAAAACAATGTGTTCAGTTGAACCTGCCTCTAGATCTGCCTATGTTTGCTATAGCTTGTTAATTGTGCCTGAAATACTTGAAAACATGCAGGTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</genome_strand>
        <mrna_strand>GATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC..........................................................................................................................................................GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA......................................................................GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG..........................................................................................................................................................................................................................................................................................ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCTAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG...............................................................................................................................................................................................................................................................................................................GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG..........................................................................................................................................................AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG................................................................................................................GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG..................................................................................CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG.........................................................................................................................................................................................................................................................................................................................................................................................GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318653" ref_strand="+" ref_description="SGN-U318653        Tomato 200607 #1 [15 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C2H2 type) family protein, contains zinc finger, C2H2 type, domain, PROSITE:PS00028 | chr1:28432367-28434910 FORWARD | Aliases: F10A5.10, F10A5_10(evalue: 3e-122, score=435) genbank/nr: gi|15222333|ref|NP_177700.1| expressed protein [Arabidopsis thaliana] gi|9369383|gb|AAF87132.1| F10A5.10 [Arabidopsis thaliana](evalue: 3e-120, score=435)">
      <seq>aaacttctctctctctttttctcttatgaaaaagagaacttcttcaacaattgctctgtttttttcccattttcttgctctgtttttaatggcactgttaacatttttaccagaaacatcagaaaaaaatcaaccttcaaagaggaggaaaaaacaacaaaaacagaataaggagaaacaaaagcagccatcttcatgggatcaattcaaaaacttattgacttgcaaacaaattgaaaactcaactgttcatgatcctgcttccaaaaaccctcctccttctgctgctgctgctgctcctgctggagcttactctaagttgagttcttgtagctccatatgcagtttcagggatgtggtacatggcaacacaagagtggtacatagagctgataattccccagaaagtagcagtttaggccaagaaactcgtcttctaagcaagaataaaacttcacatcatggtccttcatcttcaagttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttcatcaagaggaatgcaatttcgtaagctatctggatgttatgagtgtcacatgatagtagatcctagcaggtaccctttaccaaggtcaacaatttgtgcatgtccagattgtggagaagtttttccaaaaattgagagcttagaacatcatcaagcagttaaacatgctgtgtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtagggacgcggtgaagatacatgcagtggccacaggcaagaaaaacccaagatgtgcagctgatggaaatgagctgcttagattttactgcacgagccttacgtgcgtccttggtgcacgtggctcgtccagcttgtgtggctcggtacccggttgtggagtttgcactaccatacgtcacggtttccaaggaaacaaaactagtggagtccgcacaactgctagtagtgggcgggcccacgattgtcttggtagcggtatggcccgacgcagggccatgatcgtgtgtcgggtcattgctggtagagtcaagcagaatgtgggcgcttctcccacgaaagaggaggagaattgctctggctctggttctggttctggttctggcttgtctgctactggctctaccatatacaattcagtagctggacatgtagggatttactcaaatctcgaggaattatacgtatttaatccaagggctatacttccatgctttgttgtgatatacgaagcattggaatcttaggcttaatgttttttttttttaatttgtacttgagctgtttgtacggtttagtttgtttttttcttttttgttgtgtccttaaatttatgtaactaatttcaagttagttaaaaaaaagttgtaacacccgtgaggtaatgctgatccaactatgatttttgtaaatatttatttattttatttatttgtcctttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="36259" stop="40266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36559" g_stop="36909" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37381" g_stop="37632" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="603" r_length="252" r_score="0.996"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="704" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39088" g_stop="39966" g_length="879"/>
          <reference_exon_boundary r_type="cDNA" r_start="705" r_stop="1582" r_length="878" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1583" polyA_stop="1594"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U318653" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1583</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36559" e_stop="36909"/>
          <exon e_start="37381" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
          <exon e_start="39088" e_stop="39966"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAGGTATTAATTACTTAATTAAATCATATTTCCGTAACGTGCGAGTCTGATTCTCTTTTTTTCATAAATCAAATATATAGATTTTTCTCCCCCACAAGTCTTTCGTACCATGTTGAACTGCGTAAACATCTCATAACAAAAAATCAAAGTCAAAATAGTCATTTTACGATCTTATAATTAAAATATACTCGTTTTTTAGGATTCATACATGCATTATTATATGCACTTCTTTTTTTTAACTATATGACTTTACTTATGTTTTCTTTTCGTTTCGATATTTATTATAAATAAAATTTATTTTTTAAAAATAAAAAAGCAAAATCTCTAAATTTATTAATAGTGTCTTAAAATTTTGATTATAAATTGTATTGACTAGGAAGTGATTAGTAGTGTATTTCATCCAAATTTAAATTATTAGAGAAATTATTGATATAATTTTAATTATTTAATTATATTATGTCTCGATATCATTAGGGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</genome_strand>
        <mrna_strand>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGCAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGGTCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG......................................................................................................GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATG-TTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336589" ref_strand="+" ref_description="SGN-U336589        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | zinc finger (C2H2 type) family protein, contains zinc finger, C2H2 type, domain, PROSITE:PS00028 | chr1:28432367-28434910 FORWARD | Aliases: F10A5.10, F10A5_10(evalue: 1e-29, score=126) genbank/nr: gi|15222333|ref|NP_177700.1| expressed protein [Arabidopsis thaliana] gi|9369383|gb|AAF87132.1| F10A5.10 [Arabidopsis thaliana](evalue: 7e-28, score=126)">
      <seq>ttcgagatctcttgctagatcaaacggtaatggtagctccacatacactacttatcaagaggaatgcaatttcgaagctatctggatgttatgagtgacatgatataatctacaggtacccttaccaaggcaacaattggctgtcagattgggagaagtttcaaaaattgagagcttaaacatataagcagtaaacatgctggtcagagttgggtccggaagattcaagccgtaacatagtggaaataatcttcaaatcaagctggcttaaaaaggataatccgatctgtaagatcgaacggatattaaaagtccacaacaccaaacgcacgatccaacggttcgaggactgtaaggacgcggtgaagatacatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="37210" stop="39562"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37510" g_stop="37632" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.935"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.994" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37735" g_stop="37835" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="202" r_length="87" r_score="0.861"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252">
            <donor d_prob="0.995" d_score="0.88"/>
            <acceptor a_prob="0.976" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39088" g_stop="39262" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="376" r_length="174" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U336589" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.061" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37510" e_stop="37632"/>
          <exon e_start="37735" e_stop="37835"/>
          <exon e_start="39088" e_stop="39262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAGGTATAATTTTAATTTCATTTTTCTAATACATTTTATTTGTGATTAATAATCTTGATATATAGCATTAATGAGTGAAAATATTAATTTTAATTTTTTTTATAGGTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTGGTAAATATTTATATTCGAAAAATCTCAAATACTATCTTAAAAATAAGTATAAATAATTTTCTATAAAACTTGTATAATTAGTATCCTGAAAAGCATATGCTTTAAGTAGTTAAATAGATACAGTATCAAAATGACGTATATTATTCGTGTCTATAAGTTAAATCCTTATATATATTATATTTTCTTTCCTACTTATATTCATATTCCTTTTGTTTAGATTAGGGAGGAGTAGGGGTGGAGTTTATGTGGAAAATCTCTTTTTGGAAAAGTGATATAAAGCTAGTCCACACAAAATAATATATAATCGATAAGATATATAATATAATATATAAACATTATATATGTATAATAACAAGTAAATTTAGATATTTTCTATTGAGCAGTCAAATGTGTAACTTTTTATTTTTAAAATACTCAATTTGCTCGTATTTATCCTAGAAAAGATGATTCCAATCTTGTAAAAGGAGACAAGCTTTAGACAACATTTAAGCTTTGAATTGTTTTAGGCAAAGTTCAAAATTGTGTTAGTGGAGGCAAAACGGAATTGTTAATACAATTTTTATAAAATAATAATATAAAGTACGTTAATTAAATATATTTTTGTGATACATAGGTTGAGCCCCCAATAAATATTTTGCCTTTTTTTTTGGACCACTTAAATATTTAAAGGACCATCTAGAGTAATATTTGCCAACTACCTCTTCATAAAATTGAAAAGTACTATATACATGTAGGAAAATTTTAATTGACAGATAATTAATTTCTCTTTTTATTATCATATACCACACCGACAACATGCATGACACCCTAATTTACAATACTAAATTAATTAATTAAAATATTTTTAGTTTAATAATGTTGAAGATTATTTTATTTTGATTAATTAAGAATGCATACCTAAGAAAGAATCGAATCTTTAATACTGAGATATTACTTGTCTTTGAATTACATACATTTGGTAGCCCACTCTACTTAATAATTAATGTTTTCTTATCTTGTTTAGCTATTTGAGTTCTAATTATTTATCATAAAACTAATTCTGGAATAGCTTATTCCTAAATTATTTCATAATTAGTTAATAACATTAATGTGTTGGTTGGCCAGTAAGACTTGATATCTTACCAACCAGAAATGAGACCCCATTTATTTTCTTTTGTTTTTTTTTTCATATATTTTTTTTATCGAATATTAAAAAATATATATATATTATATGTTTGCGGGTTAATTTTAATTTAAGCCGATTGATTTTCAGTGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGC</genome_strand>
        <mrna_strand>TTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTT-ATCAAGAGGAATGCAATTTCG-AAGCTATCTGGATGTTATGAGTG--ACATGATA-TA-AT-CTA-CAG......................................................................................................GTACCC-TTACCAAGG-CAACAA-TTG-GC-TGT-CAGATTG-GGAGAAG--TTT-CAAAAATTGAGAGCTTA-AACAT-AT-AAGCAG-TAAACATGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................-GTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAAGGACGCGGTGAAGATACATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339317" ref_strand="+" ref_description="SGN-U339317        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G47840.1 | Symbol: None | hexokinase, putative, similar to hexokinase 1 (Arabidopsis thaliana) Swiss-Prot:Q42525 | chr1:17618547-17621329 REVERSE | Aliases: T2E6.5, T2E6_5 (evalue: 1e-45, score=180) genbank/nr: gi|67003902|gb|AAY60842.1| plastidic hexokinase [Lycopersicon esculentum] (evalue: 1e-80, score=303)">
      <seq>cataaaagctgtaatgctctctgctacggtttagtttcagcactatgaaagtaacgaacagttatatagttagccaaattcttatattctttcattaaatcctcatcaatattttattgaaattcaactgtttttcatcattattttatttgaaattcaactgttcaaacaaactttttttttttagtgttaaaagttgaaatcttgaaacactctgtttcaacgtcaccatttattgtctctctttttttctccgtcacacaattgaattgatctcactgttacccaaaatgtcggtcaccgttagctcgccggccgtccaatccttccatgtttcacaatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcaaaaaaattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccaataatatgcgggccgggcttgccgtcaacggcggcagtgatctgaaaatgatccttagttatgtcgacactctaccaactgggaatgaaaaaggcttgttttatgcgttggaccttggtggaacaaatttccgggtgctaagggtgcagctaggtggtaaaaaagagcgtgatacccccactgagtttgagcaagtctctataccccaaaaactgatgtttgctacctccaaggaactgttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49318" stop="51259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49618" g_stop="50197" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="575" r_stop="725" r_length="151" r_score="0.934"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51054" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="726" r_stop="736" r_length="11" r_score="0.727"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U339317" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>742</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49618" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGA</genome_strand>
        <mrna_strand>CATAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTATATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCT--CATCAATATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAAC--TTTTTTTTTTT--AGTGTTAAAAGTTGAAATCTTGAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCCAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCAATCCTTCCATGTTTCACAATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAAAAAAATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCAATAATATGCGGGCCGGGCTTGCCGTCAACGGCGGCAGTGATCTGAAAATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAAAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGAACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAAAAGAGCGTGATACCCCCACTGAGTTTGAGCAAGTCTCTATACCCCAAAAACTGATGTTTGCTACCTCCAAG.....................................................................................GAACTGTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328823" ref_strand="+" ref_description="SGN-U328823        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT1G47840.1 | Symbol: None | hexokinase, putative, similar to hexokinase 1 (Arabidopsis thaliana) Swiss-Prot:Q42525 | chr1:17618547-17621329 REVERSE | Aliases: T2E6.5, T2E6_5 (evalue: 9e-172, score=600) genbank/nr: gi|67003902|gb|AAY60842.1| plastidic hexokinase [Lycopersicon esculentum] (evalue: 0, score=962)">
      <seq>cactctgtggtaacgtcaccatttattgtctctttttttttctccgtcacacaggggaattggggtcactgttacctaaaatgtcggtcaccgttagctcgccggccgtccgatccttccatgtttcacgatcacctcataaaacgatctctaggccacgtgtcattatatctgccgtccgatctactgacagcttaggagtagcaccaattttgacgaagttgcagaaagattgtgctactcctcttccagttttgcgccacgtggcggatgcaatggccgatgatatgagggccgggcttgccgtcgacggcggcagtgatctgaagatgatccttagttatgtcgacactctaccaactgggaatgagaaaggcttgttttatgcgttggaccttggtggtacaaatttccgggtgctaagggtgcagctaggtggtaaagaagagcgtgtagtcgccactgagtttgagcaagtctctataccccaagaactgatgtttgctacctccgaggagcttttcgatttcatagcttctgcgctaggaaaatttgcacaaaaggaaggtggtaattttgagttgcaacagggacggacaagggaaataggattcacgttttcttttccggtgaaacagacttcaataagaactggaatcctaatcaaatggacaaaaggttttgctgtctctggaactgcgggaaaagatgttgttgcttgtctgaatgaagccatggagaggcggggaatggatatgcaagtgtctgccctggtcaatgacactgtgggaacacttgccggagcaagatactgggatgatgatgccatggttgctgtcattcttgggactggaaccaatgcttgctatgtagaacgtgtggatgctattcctaagctggcaaaaaggatgtctaagtctccaataacgattgtgaataccgaatggggagctttctcaaatggccttcctttaactgagtttgatagagaaatggatgccgagagcattaaccctggtgagcagatttttgaaaagaccatctctggtatgtaccttggggaaattgtgagacgggtgctggtcaaaatggccaaggttgggggcttatttggtagcagctatgttccggagaagctagtcactccatttgtgctgaggacacctgatatatgtgccatgcagcaggatacatcaatagatcttgaagctgttgagtctgtcctctatgatgtagctggggtaaaatccgatctaagtgcaaggaaaacagtcgtggacatttgcgatactattgcaaaacgagggggtcgtctagctggtgcaggaattgttggtatattacagaaaatggaggaagattctaaaggtctcatctttggtaaaagaacagttgtagcaatggatggaggcttatatgagcactatcctcagtacagaggatacctccaagaagctgtcacagagctactaggctcggaaatttcgaaaaatgtagtgatagaacattcaaaagatggatctggtattggagctgcattattagctgctgcaaattcaaagtatgaacatgatgattaagggaaaagctaaatttcatgtgttcaaaggtttgcttgaggaaaaatacatgagcatttgtaatttagaatgttctaaagaaggattgatgattggatttatagaggctcttgtttgtgatgccattttttgtactcccattaatgaagtacgaagaagtgaggatttatatagccaaccccaatttatttggaatcgaggcgtagttgtaattgtattatatgcagcactgacttatttatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="49545" stop="54002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49834" g_stop="50197" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50808" g_stop="50958" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="515" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51044" g_stop="51226" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="516" r_stop="698" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51227" i_stop="51789" i_length="563">
            <donor d_prob="0.818" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="51790" g_stop="51864" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="699" r_stop="773" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="51865" i_stop="51962" i_length="98">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.929" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="51963" g_stop="52118" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="774" r_stop="929" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="52119" i_stop="52204" i_length="86">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.828" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="52205" g_stop="52300" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="1025" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.877" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="52403" g_stop="52536" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1026" r_stop="1159" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95">
            <donor d_prob="0.988" d_score="0.98"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="52632" g_stop="52713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1160" r_stop="1241" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="53118" g_stop="53702" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1242" r_stop="1826" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U328823" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1826</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49834" e_stop="50197"/>
          <exon e_start="50808" e_stop="50958"/>
          <exon e_start="51044" e_stop="51226"/>
          <exon e_start="51790" e_stop="51864"/>
          <exon e_start="51963" e_stop="52118"/>
          <exon e_start="52205" e_stop="52300"/>
          <exon e_start="52403" e_stop="52536"/>
          <exon e_start="52632" e_stop="52713"/>
          <exon e_start="53118" e_stop="53702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGGGTAAACTACTAATTTTATTTTATTTTGGTTCAGTTGTGATATTAATTGGTTGGCCAGCTAATTGGGTAAAGATCCCATTATTTTTACTTTAAGCTATAGTTGGTGTACTTCAATTCTTCAAATGTTTAATTTGATGAACATAATCACAAGGAGTTACATGGTTTAAAGACTTGTCTTTTTCGCCATGTAATGTGTTTGTCATCTCATCTAAAAGCTGAAAGTTGAATAATTGTTATGTTTGAACACGCGGCTACATGTGAGCTTGATTTTTTTCATGGGACGAACACATTGAAATATTTTTTACTTGCGATGATGTTTGAATCAATAATCTCTGGTTGATTTGATACCATATTGATGTGTGTGACTATCTTGTCTAAAAGTTTGAGCATGTTATAGTGTCTTGATTATATATTACTCCCTTCGCTTCATTTATGTGTCTCTAATATTTCCAAGTATGATTTCGATTTGTTCACTTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTGTTTGATTGTTGAGCTTGTTCTTATAGTATTTGTTACAATATATTAATGATTAATGAAGGAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAGGTTGTTTAGTTTTTCTTGTTGTAATGGGATTTGACCAATACTATCTTTTTTGTTGTTGTATTCATCTTTGCATCGGTTATTGTAGGAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACTGTTAGTATTTCTTGACTCTCTTATTTGTGTAAAGGAGTGGCAGATTTTAGACATCTTACTAATTTAGCCTATGACTGATTCTGGAACCATACATCGCTAAGAAGGCCAATCAATTCTGCGTTATTTTAGTTTCAGTAAAGATGGCCAATTTCCCTCGAACTACTAAAACTTCCAACGAACGTTACGGTTTTACCTTTTTCTGAAGAAAGCACCGGAATCATCTAGTTGGTAAAATCCTGTAATTCCATCCCCAATCGATTGTGCATGTGAGATTTTCTGTTTTCTGGACAACCGAGTGTTTCATATTCGTGAGTCCATTTTTTTCAAGATACAACAAATTTGTAAGAGTACTGGTTACACTATGATAACTGATTAGTAAGTTGTGTAATTAGAGGGATCATTTCATCGCTTTGTTCTTACAAGTCGAATCGGAAAATACTGGATTCCAAACTAGTAGAGAAGATCGAGTTCCTTAACATTGACTTTTAACTTTGTCTCTCTTATCATTATCATTTTCATTTTACCTGCCGATTATTTTTTGATTCCATCATAACATGGAACAGGCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTGGTAGGTTCTTGCTCAACTTCATGTGTATTGTAGAAATGTTGGAGAATAGTCTGGCGCTTCCTTAGTTCAATCATTTCATGATTTCATTGTCAAGTTAGGTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACGGTAAGTAGAGCCCAAATCTCCTTCGTCAAGTTATTTCATGAACAGATTTTAGCAACCATTGAGTTTGATACATCATTATATTTTAGATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAGGCAAGTATTATTGACTCAAAATGTGAAAATTTCTTTTCTTCGTATTATTGGTATCACACTGTTTCTTAATGGTCTTTTCTACCATCTTATTTCTTGATGAAGATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAGGTAATTACATCTGTTATATCAGAAGTTTATGATGCAAATGTTCTCGGTTTGTATTAATTAGTTTTTACTCACTCTGTCTGATCTGCATCATATAGGACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGGGTATATTCCTTAACTCTCGTGTTTTAACTTGCACTGCAATACTCTTTCCAGTCACTTATCTTCTAGGCCAATTTTTTTTCCGATTGAATACTTGTTGTCCAATAATCGATTCATGAAGAACCTTACATTTGAAGATCTATATTCATTCCAAAGACAACATTCAAAAGGATAGTTTAGCATCTGTTTCCATAAACATAGAACATTTTCCAGAGTTATGTTTATAGATATGAAAACACACAATAACAACTACTATTACGCCTCAATCCCAAGCAAGTTTAGGTCAGCAAAAAAATTTAGTCTCTCTAGCACTAGAAGTTCTTTGCAAAAAATATTTTCGTAGAGTATGAAAGAAGTCTACGAACGTTTTGATGTTCACGATTTTTCTTTGGATTATTAAATTTCAGGTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</genome_strand>
        <mrna_strand>CACTCTGTGGTAACGTCACCATTTATTGTCTCTTTTTTTTTCTCCGTCACACAGGGGAATTGGGGTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG.....................................................................................GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG..................................................................................................GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG......................................................................................ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG......................................................................................................ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAGAAGCTAGTCACTCCATTTGTGCTGAG...............................................................................................GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321683" ref_strand="+" ref_description="SGN-U321683        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | clathrin coat assembly protein, putative, similar to clathrin coat assembly protein AP17 GB:CAA65533 GI:2959358 from (Zea mays); contains Pfam profile: PF01217 clathrin adaptor complex small chain | chr1:17615538-17617355 REVERSE | Aliases: T2E6.6, T2E6_6(evalue: 2e-74, score=275) genbank/nr: gi|77553342|gb|ABA96138.1| clathrin assembly protein AP17-like protein [Oryza sativa (japonica cultivar-group)] >gi|17149110|gb|AAL35901.1| clathrin assembly protein AP17-like protein [Oryza sativa] (evalue: 1e-73, score=279)">
      <seq>tctctggcacctcagttgtgaccctgagggctttttgctggtttttacaaattaaagaatcaaagagattttttcaattgtttctacagctgttttgcctgcagatcttctgaacaaaatgatccgttttatattgcttcagaacaggcaaggaaagactcgtttggctaagtattatatacctcttgaggaatccgagaagcacaaggtggaatatgaggttcataggttggttgtgaatagagatcccaaattcaccaactttgttgagttccgtactcacaaggtaatatacagaagatatgcaggattatttttctcactttgtgttgatatcacagacaacgagttggcttatttagagtccatccacttgtttgtggagattttggatcacttcttcagcaatgtctgtgagctggatttggttttcaatttccacaaggtatatctgatattagatgagtttattcttgctggggagctccaggaaacaagtaagagggcaatcatcgagagaatgggagagttggagaagcaggagtgaagaactccgatgctttgctcaagagtcaaaacaaacacttgccttttccttcatcacctgcacttctcttccggctggctgtatttactgcattagacattctgtatcccgttgataccttcatgttgatgtggcctcatttaatacaagatttgttcattcatacatttaaaggtagtttgcaagtttaaatatgaatgtctctatctattcccagtttaaatatgaatatctttatcttttgttaactccaaaaactatattgttgttggaagtaggaaaagggttatttcaatccgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaacctcgaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="56661" stop="60470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56961" g_stop="57081" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.799" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57228" g_stop="57326" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="220" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="57409" g_stop="57459" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="271" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.658" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58763" g_stop="58936" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="445" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302">
            <donor d_prob="0.951" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59239" g_stop="59298" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="505" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528">
            <donor d_prob="0.713" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="59827" g_stop="60169" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="848" r_length="343" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="850" polyA_stop="887"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U321683" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56961" e_stop="57081"/>
          <exon e_start="57228" e_stop="57326"/>
          <exon e_start="57409" e_stop="57459"/>
          <exon e_start="58763" e_stop="58936"/>
          <exon e_start="59239" e_stop="59298"/>
          <exon e_start="59827" e_stop="60169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATGGTAACTTTTTTCTCTTCTCTTTGATCTCACTGAAAATTATTTGGTAGCAGAAATTACAATCATTTTGTTTTCAATTTCATGAATTTGCTGTTCTGATTGATTTTTGATCGTTTGTTTTCAACTGGGTCATCTCGAAAAATGGGTAGATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAGGTATTTTAGTTTTTTTTTTTATGTGAATTTGGTGATTTTAGATTATGGGTTTTGATTATATAGTCAATTTTGGTCCTTGTAGGTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAGGTAATCAAGCCTGATTTTTTTTTTTTAAATTTCAGTTGATGGAAGCTAGCATTTCTCTGATTAAGCCCTTTTATGTATGTGGAGTTGAGTTTAACTTGATCAGCTTGAAATGCAAAAAGCGAAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATATTATATTTTTGTAAAATATGATAGAAAACAACTGAGTGTGAGCAATAAGGAAAATCAATAGCTTTTCTGCTGAAACCTCATCAGAATTGATGAAAGAAGTTAATCTAGCGATTTTTTATTTGATGATGGAGCTGCTTAACTTACTTCAGTAATAGGTTGCACGAGATTTACATCTCTGGCTGATTTCAGTCTCCACTTCTTTTCAGTTTTTGTGTAGATATGTTCCTTCATAAGTCACTAATAACTAACACCTGCTAGTTATCTCCTCTTTGCAGTTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAGGTTAGACATTTCTCATCAAACGTTGCTACTTACAGAAGCAACAAAGTTAATAACATCTTTCTTTCCTGTGATCCCTGTTGTGGCACAATGGTCTTGTTGAATCTTCTAAGATGCCTGTTAAATATTGCTGCTGTATTTTTCTTTTTATATTTTTGTGCCGGCTCTCCAACTTGGTGCTGGTCGTCAAATCCTTAGCTGAGCCTTTTAAGTTAGAAATGAAGAAATATGTTTTTCATTAGTAGAGTCAATGGCACCGTTCTTTACTCATTGTATCATTTATGATCAATTTCTTCCCTCTGCAGGTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGGGTAAGAAATCTGCTTCCCTAATCACCTCTTACCCCCTCCATCCCTCCTCCAGACGTAGGGCCTGTAGCTGGCCAATTTTCTGATCTTTTGATGCTCTCTAGCTTGCCAATTTTTTGATTTTTTGATGCTCGCTAGGTCCTGTAGCTGGCCAATTTTTTGGTATTTTGATGCCCACTCACGCACACTCACACTCACACTCACACTCACACTCACACTCACACATATGGATATGTGTATATACATATGTGTATTGACTGACATGTACATGCTAATTTCAAGGTGTTAATTTTAAAAAAACATATTTAGCAGTGGTCCAAACTATCTCTGCTTAAGCAGGGTAACTAGATATTAGGTGTTGTTTGTCCCTCATCCATGAGAAGACAGATGTTTTGGTTTTGTATATATATTCCTTTGCTCTCTTTCCTCACATCCTGCCCAATGGAATAAAGAAGTTGATGCATATTTGATTCTGCCTCGACTTGTTATCCTATATAAATTTGCACTAAACAACATTCTTTTACACGCCAGGCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</genome_strand>
        <mrna_strand>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG..................................................................................................................................................ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG..................................................................................GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG..............................................................................................................................................................................................................................................................................................................GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAAAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326623" ref_strand="+" ref_description="SGN-U326623        Tomato 200607 #1 [4 ESTs aligned]">
      <seq>aaaatgtgattatctgtcttgttttcgatctatagaacaccatactaagcgaatttgctacaattgtgctaaggcaaagggttctctttcgctagcctttaattttctaaaagtagtaatgtgtaactatcttatactgtgagaggatgatgtcctcttggtggagaactattttgctttccctctacactacgcctgcacattatcatgacatttcacattattggtgaagtaatatcaagatggtttatcgtatttatctaccattgcatcataaatacttgttccgttggtatcaaaggaataactttgtgaaatgattgaaggatagggagtggtgggggattcaagatattgttcaaaatttaatttctgtgtagagtaacctatgttatggcttagtatgaaattcttattgagacatttctccgtacctacatgttgtttcctaattcagtatcttggctttagaaaatttagaggttggaagagagtgggagagtggagggagggaaggatcaagaaagaagagccatttcccttttgcttgtgcatgattagaggatttatttagaatcatatacagactactttttatgcatcattctagcttcaatattgngtgtaatattcctgngatctgatttcttaaagaatcaaaaaatgttaacctgcaaaaggaaacaaaagaagcattgtgttttaactttgttgggtaatcctttctcatgagatgcttcgtgaagtataacatactatttaaaagtcctcgatgacataaagtacaaagcaagatatcggacagaagctcttttttcctaagtaagtgatttatccttggagctgtaagggggaaggtaaagccaaggaagagagagaaaaccagtttgaggtttgaacttgtgtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="57281" stop="58787"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57581" g_stop="58487" g_length="907"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="909" r_length="909" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U326623" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>907</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326623" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57581" e_stop="58487"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTG-GTGTAATATTCCTG-GATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</genome_strand>
        <mrna_strand>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTGTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACACTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGNGTGTAATATTCCTGNGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCCAAGGAAGAGAGAGAAAACCAGTTTGAGGTTTGAACTTGTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332345" ref_strand="+" ref_description="SGN-U332345        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>cagtacaagtttggtggagtctctacctcacaaatgcgagactggcaaaatgcagggcgaccaatgcctatctttggaccttctcaagctcaattggcagcttcttcttcctcgatggaagcactttcttccaagtatgttccacccttgttgaacgagcaggagcttatgtccatttttacgtcacgaactaattcaaggatcaaaggacaatattacagtttcccttctggcttggaaggaagtggacatggactctaccccaataatgtgccttcattgcagcttctttgcaatgatcgtcgttaatacggagagccatggcaccatgtccataatatcagagcgaaactcctgcaaatcataattgatttattcttttctttgcttatgcatgagagttggtgttcattctgttactgaatataaggaacacaaaaaagggaggatatagtaaatttcatgtcccttattagatgcttattctgtttcagtttcaattaattatagagtaacaacttcagaaatggttgttggtttttccctagatggaaagaaactttatgtgtctgagaaggttattgacttgtagtatacacaagaagaagaatggcaatgaaaaaaattgcagctgctttaaatttctttcagcaattttcaggaaaataaagtgttcttttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="61560" stop="60276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61260" g_stop="60577" g_length="684"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="684" r_length="684" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="685" polyA_stop="700"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U332345" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61260" e_stop="60577"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</genome_strand>
        <mrna_strand>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTTTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATTTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321445" ref_strand="+" ref_description="SGN-U321445        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28439367-28443328 REVERSE | Aliases: F10A5.7, F10A5_7(evalue: 2e-20, score=97.4) genbank/nr: gi|42563241|ref|NP_177702.2| expressed protein [Arabidopsis thaliana] (evalue: 1e-18, score=97.4)">
      <seq>aaacagagtaactgatcgttttcgtgtgaaatcttgagagaatcgggtaatcaaaaaccgaaagcttcggtttttccgtttgttaagcagaaatattctcagatagctaaatcgttactatttggattgtaagggaggaaatgaaataattgcgaagaaatcgaagaaagggggagaaagattgagtggtgctggtgaagtttagtccagtatgaacaacattgaaatgggttgtttaaagtctgatgataacgatgagattcattccaatgtttctgttcggaagcgatttaagtttcccaaaaagttttttgatgagtgtaatggagtagatcatgcttctgttcctcggaaagttcgttcagttatcaagaagagaattcgcaagctcatctctccacctttgccgatttccaaaaaggcgaatcgcatgtcagatggagctgaaacactaaggaaatatggcaacaagtctaagcttaatttgactcattgtggttcaagtcggtgtataaaggaggagcttgattgtccaatcaccaaagatgaagaggaagtggctgaaaccttgtatgctttggctggtatgatcccagatgttgacaccttgagcgaaagcaaaataaatagtcaacttcctgaagtgaaatctttggacttaccagaacctgaggcttctgtaatcgcaagtggagttgtaacaacagaacaggacataaggacaaacagctcccaattcagtgctgaagctttgaagcagtttccagacatagctgtttctgctggagaagctgccaaatcaaaatcatttcatgatgcttccccgtgtgatacattcatcaacacagagcagctagaaatttcatcgcaacaagttgttgcttatcaagccaacaaacaaaacacacacaaggagaataggaataatggttcattgttgtggccaggcttgtctgcagcagggtcatcttgttccgacatacttgattcttcaccacagtttccaattggcaaatttcctgtctggatcgggagcgctggcactgatcatcaagctcaaaatgcaaaatcttgtctaccaaccatgaaggattctcaagttccacttgagttgaggaagtcatttaagaggtgtgctgctcatgtttatataagtcggctgactaagggcttacagacttcgatgagaggtgacacagtctcctcgcatccttctcagtcctcacctcctgatggagtgaagcaagagcctcctataattcagaacagcccaactgtaaaggtgaatgatatgcatggaattgtttctactgggaatgttgcctctactgttgagaagaatccaactgaagttagaaatgcaatccttttgcaccaaagactcctccaagatcagcaacaggcttctactacatctgggttcaattctttaccaaagcagaatgcagatttcctttcattgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="66007" stop="61801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65707" g_stop="65583" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65582" i_stop="64555" i_length="1028">
            <donor d_prob="0.830" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64554" g_stop="64373" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="307" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="64292" g_stop="64235" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="365" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.699" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63856" g_stop="63735" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="487" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63601" g_stop="63394" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="695" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85">
            <donor d_prob="0.886" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63308" g_stop="63130" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="874" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75">
            <donor d_prob="0.866" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63054" g_stop="63000" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="875" r_stop="929" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="62876" g_stop="62807" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="930" r_stop="999" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="62730" g_stop="62640" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1090" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="62543" g_stop="62193" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1091" r_stop="1441" r_length="351" r_score="0.997"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="62192" i_stop="62125" i_length="68">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="62124" g_stop="62101" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1442" r_stop="1465" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U321445" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321445" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65707" e_stop="65583"/>
          <exon e_start="64554" e_stop="64373"/>
          <exon e_start="64292" e_stop="64235"/>
          <exon e_start="63856" e_stop="63735"/>
          <exon e_start="63601" e_stop="63394"/>
          <exon e_start="63308" e_stop="63130"/>
          <exon e_start="63054" e_stop="63000"/>
          <exon e_start="62876" e_stop="62807"/>
          <exon e_start="62730" e_stop="62640"/>
          <exon e_start="62543" e_stop="62193"/>
          <exon e_start="62124" e_stop="62101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGGGTAAATCAAAAATTTATTCTTTTTGTTTGTTTGTTTGTTCTTGTTCAGTTATGAGTTGTTGCAACAGATTGTAAGCTGGATTAATTTTTTTTTTCATGATTCTCTGTTGTTTGTTCATGGAAATGACTGAGTTTTTTGTTTTCTGCATTTTGAATTTTTGCGTTTTCGATCTGAAAGAGTGATGAGATTATGCTTTTTCTGAAGAAAATGTACGTTTGATCTATATAATCTGATATGTTGATCTGTTTTAATGGGGTTTTGTTGATGAATAGAGATGGTACTGTAATTTCTCTACATGGGGTTGATTTTTTTTAGGTACTTTGCGTGTGTGTTGTCTTTCTCTTTCTCTCTCTCTCTCTTTCTTTTTGGGGGTTGATGAGTACGAGTGTGACAGACTCACAGTGAGAGAGCGGCTTTATTATGTGAAGAAGAACCCGATTCGTTGTACATAAAGGACCAAATTCAGTTTTCTTCTTCTTCTTCCCTTTTTAACCATTTTTAGAGTTTTTAAATGTTAGTACTGTAAAACCCAAAAGCCTTTAATGTTTCTGTATCGGGTTTTTAGATTCACTACCAAAAGTTCTGAATTTTGGAGGTTCTTGTTTGATGATTAGAGAATTGATTGTAGCTGGGTCTGGAAAAAAAATTGTTTTCAATTCAATTTTGTTGCAGTATTTTTTTTCCAGAAATGGACAAGAATCGGTAATGCTTAAGTGTGAAAGTGAATTTTATTGTTTCGTCTTTGTATTAAAATCAAACGGTTACTAGACAACAAGACCCATCAATGCGTCTATTGTCTGTTTCTGCAAATATATTCTTATTCTTATTCATCTATATGTGGATTTTGGTGTTTGCGAGGTTGAGAAACGCGTGTCGTCTTGTATTCCTCCTTTTCTCCTCTCTTTTTTTCTTTTTTGGTTATCTGTTACAGTTCTTTATCCTTCTTTTTGTTTTGATTTTTCTTGTGATTTCTGCTTTCCACACAAAATTCTCTGATAATATTTCTGGGTTTTGCTTTGAATGCTTAGATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAGGTTTGATATTTTAGCTCAATTAAGTATATTGTAAATAGGTATTGGTCTGTTAAATTCATTAACCCCTTTTGGATTTGCAGTTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAGGTTTGTATTTTTGTGAATCAAATTTGGAAATTACTGACTTGCTTATGTTTGTTATCTTATTTGGAATAGTTATGTGTTAGTTGGAGCCCAGTGCTTGGAAGTGGGTCACTTGTTGCTTTATTTTGTAAATTATAGTAAATTCCTTTTCACCTTTTCTTTCTTTTTAAGCATGAGAAGATTCTGTAAGTTTCTTCGTCTTATTTCGCTTTTTAAACCTTTGGAATCATTAAAAAGTACTTAATCTGCAATTTGGGTGATTGTACTGGCCAAGTTTCTGGTTTTAATCTCTTATAAGGTGAAATGGTTCTTGTTTGAGTTAAACTTTGGACTTCCAATTGATCATAAATTGTTTGCTTTTGGATCCTTTGCCCTTTGTAGTTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTGGTTAGTGACTTGTAAATTTTGCAGCTTTTTCCTTTTAATAGTTCTTTTAGCTCTGTGGTTCCTCTGCCAAACAATTGAATGATATGCTGTTCAATTGAAAATTTTCATCTATGATAATGAGATTTAAATGCAGACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAGGTCTGCTTGTTAGTTCTTCGTTTCTATGTTGGTCTCTTCCATAATTGGTCATTTGCCGAACTAATGTATTTCATAAATGGTGTAGTTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAAGTAACTTTTGTTTGGACATCTATACTCTTTGGTTAATACGTGACAGAAATGCTGATCTTACTGTTCTGTATTCAGGTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATGGTATAACTATAGCCTGCAAGTTTCAAATTTTCTGATGACTGGTTGTAATATATCCGAGACGGTGTCATCCAAATCATGTGTATTTTATATCTACATTAACAGAAATGTTGTTTTGGCGATCAGGTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACAGTAAGTTCCCATTTCTTACCGCACTCTTCCTTGCCTACAAATATTGTTTGGTTTCTCATGCACCGAGTAATGATAGGTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAGGTGTTTTAGCACTTCGATATAGCTTTCAGTTACTCTCATGTACTTTGTTCCATTCTGAACAACTATATGGAACACTCATTTGATTTGATTATGCAGGATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAGGTTAGTTATCTTCAATAATGTGTGATATTCTTCATCCATACACGATAATAATCCTCTTTCTTTCGCAGAATGCAGATTTCCTTTCATTGTCA</genome_strand>
        <mrna_strand>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG................................................................................TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG..........................................................................................................................................................................................................................................................................................................................................................................................TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG.....................................................................................................................................ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG.....................................................................................TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA...........................................................................GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG...........................................................................................................................GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA............................................................................GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG................................................................................................GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTACCAAAGCAG....................................................................AATGCAGATTTCCTTTCATTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317094" ref_strand="+" ref_description="SGN-U317094        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related thaumatin family protein, similar to receptor serine/threonine kinase PR5K (Arabidopsis thaliana) GI:1235680; contains Pfam profile: PF00314 Thaumatin family | chr1:28462443-28464515 FORWARD | Aliases: T4O12.3, T4O12_3(evalue: 2e-105, score=379) genbank/nr: gi|15222875|ref|NP_177708.1| thaumatin family [Arabidopsis thaliana] gi|25296203|pir||D96787 protein T4O12.3 [imported] - Arabidopsis thaliana gi|6721098|gb|AAF26752.1| T4O12.3 [Arabidopsis thaliana] gi|18377860|gb|AAL67116.1| At1g75800/T4O12_2 [Arabidopsis thaliana] gi|20334826|gb|AAM16169.1| At1g75800/T4O12_2 [Arabidopsis thaliana](evalue: 2e-103, score=379)">
      <seq>tacatttctcctttttccatttttaagaggaagaagaagaaggagaaggctagggattttgatctacaagctctcttttgcatcattaatattcccaccttcttcttcaatggcgcaagtgaaactgctctgtctatttgctctgtttttaactattacacagctgttcatagcaggtgtaaattcagctgcaacatttacaatggtgaataaatgtcagcaaacaatttggcctggattattatctaacgccggaatagctccactttccaccactggttttgttctacaaaaagatgaatcgaaaacaatcagtgtgcccacttcatggggcggcagattctgggctcgtacacattgtaccgaagattccaccggaaaattcacctgcgccaccggcgattgcggctccggtaagctcgaatgcgccggtggcaacgctgcaccgccggcaactctagctgaattcacactcgacggatccaacgggatggatttcttcgacgtcagtttagtcgatgggtacaacttaccaatgcttgtggtaccacaaggtggttctggtaacaattgtacaagtaccggatgtgtggtggatttgaacggcgcgtgtccgtcggagctgaaagtaatgagcctgggaggcgaaaacgtcgcgtgtaagagcgcgtgtgaagcttttcgaaaagatgagtattgttgcgccggtgcgtttaataatccgacgacttgtaaaccatcatcgtattcaacgttgtttaaaaaagcttgtccgagtgcttacagctatgcttacgatgataaaacgagtaccttcacttgtgctggcgctaataattatcttatcacattttgtccttcacctaataccagtcaaaaatcgtcatcatcatcaagtggacaaaatcaaaaaccagaagatagtaacaatcaaaacgacaacgataataacaacgagccatcaacgatcaacaactctatggtatatgatggtgcatgggatatcaatagtgcatcttcaaccaccacgtgcatgcacgtgttcagttcaccggccatagccggtgccgtcgccttcttaacagcctctttccagttgcatcgtcagctctactaattttttatttttgactttttgttgacactcgaaaaaaaaaattaggcgaaaaggccggcctgacccggcccatgttattttgtcggaatttggggtgttgtatcacgtgtggaccattaaattgggccttgtgacccacatgtgtggcccatgtgacggggaaatgagtcagcttacgtgtcaatttaattgacgtacaccgaattaccttttaattggtgaaaaaagaggtttccatagccacaaaatttagagttttggaggttatttaattttttattttattttatttgacttttttttagttttatattttaaattttaattaagattgggattaggttttaggagagggagattcatttggtaggtaggttttagttagaaaaattatgtataatatgcttttatgtttgtaaccattccaagttggtggaaattatataaacttaaaaaaatggattggggatttattttttaaaaaaaaaaaaaaaaaaaaccctgggggggggcccgggccccatcctggggggggggggggaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="68562" stop="71877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68862" g_stop="69037" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443">
            <donor d_prob="0.928" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69481" g_stop="70177" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="873" r_length="697" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="70852" g_stop="71574" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="874" r_stop="1596" r_length="723" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U317094" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1596</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68862" e_stop="69037"/>
          <exon e_start="69481" e_stop="70177"/>
          <exon e_start="70852" e_stop="71574"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAGGTAATAATTCAGAAAAAAAAGTCCAAAAAATGATTTTAAAAAAAAAGCATTGATCTTTATCTTTAAGAGCATTAATTTTTTGGATCATATTGTATAAATAAGATACAACATTCATCTGTAAACATTTTACAAATAAAACTCTGTTTTTAGCTCTTTCCAACAGGTAATAATTCAGAAATTAGTAGTTATACTAAAAGAGGAATATGAAGTAGAATTTTGTGCGTAAAAGCTTATTTCATTTCAGATAAAATAATGTTTAAAGATTTGATTTTCCCCATTTTTTGGGTGTGAATTTACAAGTGAAAAAACCCTCTCTGTTTTCGCTGTTATAAACAAAAAACTGGTGATTATAAACTAAATTTGTTCTTTTAGAGCTGATTTTAGATCAATTTATGTTCAAAGATTTGATCTTTTTTTTTCTTTTTGGGTTTATGAAATTTTAGGTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAGGTAAACTTACTTATTCATCTTCTCTAATTTTTTTCCTCACAAATTCATACCAACAAACAATTTAATCAAATTTAGATAGTTAACTACGTGAGCTCGTTATATTTTTTTTTTAATTTACAAAATTAACTTGGGATGGGTGGGGGGACACATTGGGATTGAGTTGGGAATGTGGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAGAGGTCTCCATAGCCACAAAATTTAGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAGAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGTGATTTATTTCTT</genome_strand>
        <mrna_strand>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGTGCGTTTAATAATCCGACGACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAAATCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAGAGGTTTCCATAGCCACAAAATTTAGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAGAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGGGATTTATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345326" ref_strand="+" ref_description="SGN-U345326        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ggcctgtcaaatggaacgttaggacgttattttcaatttaaagaaaaaatatctgacatcatattattcgtaggggtatgtgggctataaggaaattagtaggggtattttagtactttacatagtatgtgagatcatttttataggagaatgggttccacgtatagtgaattagtactttataacataatatatgaggtcattgtaataggggtatgtggttatatataggggtattttagtacttgtgctaactaagtcagctttgggaattgggaaaaatatcaaacttaacggcttaaagagattctctgacccaagactatgaattgtcctttttatccaagtagccatagcccaccaattggtctagttctgcgtgaattcgtcaaatttattccaatcaaatggttattaaaatatattttatttttataaaataagaattgatcgacattaataaggatttatatagctgattcaataatacaatttccattgcagtcaaaagtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="+" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="70048" stop="71162"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70348" g_stop="70862" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="+" ref_id="SGN-U345326" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70348" e_stop="70862"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGT</genome_strand>
        <mrna_strand>GGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTAGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCCAATCAAATGGTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313810" ref_strand="+" ref_description="SGN-U313810        Tomato 200607 #1 [60 ESTs aligned] arabidopsis/peptide: | Symbol: None | shepherd protein (SHD) / clavata formation protein, putative, nearly identical to SHEPHERD (Arabidopsis thaliana) GI:19570872; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein | chr4:12551731-12555915 REVERSE | Aliases: T22A6.20, T22A6_20(evalue: 0, score=1170) genbank/nr: gi|462013|sp|P35016|ENPL_CATRO Endoplasmin homolog precursor (GRP94 homolog) gi|542022|pir||S39558 HSP90 homolog - Madagascar periwinkle gi|348696|gb|AAA16785.1| heat shock protein 90(evalue: 0, score=1201)">
      <seq>aacactctactttgaacgctgcttgtaaaatcatcggccggcgacctctaaagttgaaattccggtgacggagacaatgaggaagtggaagatcccgttcgtcctgtttctgttatgcctgatttaccttgttccagatcaaggtcgaaagatacaggcaaatgcagaagctgattctgatgcaccagtagatccaccaaaggttgaggagaagtttggtgctgttcctaatggtttatcgactgattctgatgtggctaagagggaagctgagtctatgtcaaggaaaactctccgagctagtgcggagaagtttgagttccaggctgaggtctctcgtcttatggacatccttatcaactctctctacagtaacaaggacatctttttgagggagctgatttccaatgcttctgatgcactggacaagattaggttccttgcactcactgacaaggaggttcttggtgagggtgataatactaagcttgagattcagattaaacttgataaagaaaagaaaattctttccattcgcgacagaggtgttggaatgaccaaggaggatctaagaaagaatttgggaaccatagctaaatctggaacttcagcttttgtcgagaagatgcagacaagtggtgaccttaacctgattggacaatttggtgttgggttttactctgtgtatcttgtggctgactatgttgaagtcatcagcaagcacaatgacgacaaacaatatgtctgggaatcaaaggcagatggggcatttgccatttctgaagatacatggaatgaacctcttggccgtggaactgaaattagactgcatctaagagatgaagcaggggaatatttggatgagctcaaactaaaggaattggtcaagaaatattctgaattcatcaacttccctataaatttatgggcaagcaaagaggttgagaaggaagttcctgctgatgaggacgagtcagttgatgaagaggaaacatctgaaagcacttcctctgaggaagagggagaagaagaagatgcagagaaggccgaagatgagaagaagcctaaaactaagacagtgaaggaaaccacatatgagtgggagcttttaaatgacatgaaagctatatggcttcgaagcccaaaggaagttacagatgaagaatataataagttctatcactctctggcaaaggacttcagtgaagataaacccatggcgtggagtcacttcaatgctgaaggtgatgtagagttcaaggctgttctattcatccctcctaaagcccctcatgatttgtatgagagctactacaacacaaagcaatccaacttgaagttatatgtcagacgggttttcatctcagatgaatttaatgaattgttgcccaagtacttgaatttcctaatgggtcttgttgattctgacaccttacccctcaatgtctcaagagaaatgcttcagcagcacagcagtttgaagacaattaagaaaaaactcatccgtaaggcccttgacatgatccgcaaacttgccgaagaggatccagatgaaactaatgacaaggagaagagagatgttgaagagtccagtgatgaaaatgagaagaaaggtcaatatgccaaattctggaatgaatttggaaagtcgattaagcttggtattatagaagacgcaactaacagaaaccgcttagctaaacttcttcgatttgagacaaccaaatcagatggtaaattaacttcacttgaccaatacatctcaagaatgaaatcaagtcaaaaggatatcttctacatcaccggtgccagcaaagaacagttggagaaatctcccttccttgaaagacttaataagaaagactatgaggttatattcttcaccgatccagtagatgaatacctcatgcaatatcttatggactatgaagacaaaaagttccagaatgtgtctaaagagggattaaagcttaaggattcgaaaaccaaagagctcaaggagtcattcaaggggctaactaagtggtggaagaatactcttgctagtgacaacgttgaagatgtcaagataagcagccgtttggccgacaccccttgtgttgtggtaacatcaaaatacggatggagtgcatatatggagaaaataatgcattcacaaaccctgtcagatgcaagcaagcaagcatacatgcgtggtaaaagggtgcttgaaatcaatcctaggcacccaattatcaaggcacttcgggagagagtagtaacagacccagaggacgagagtgtgaagttgacagcaaaacttatataccaaacagctttaatggagagtggcttcgatctgagtgatccaaaggattttgcctcccacatctacagctcagtaaagagcagtctaaacattagccctgatgcaacagttgaggaagaagaagacgaagctgaagaacctgagactgaaaccaaggcagaagaggagtctgcatcggatgagtctgaactcaaggatgagctatagatagtgtcctaagatatgttcctttttcccggaaacaacacgttgttgtggtatgtttctcaacacgtgaagaatgtaggaatagtttagttcatagtcttaaacttaaaaagaattttgtcagtcttgcattttcgttgttttagtgtatgagtttgtcgttccgtgtaacaaatctggaaggtcttgttttttcctaattggaactggtaaaagctctagtttttctaaggaaatcaacttttgacgtgttgcaattgttattcattctaaattttactgaaaaataagtagtgcttgagcatgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178J08-CUgzd/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0178J08.1" temp_strand="-" temp_description="C04HBa0178J08.1  htgs_phase:2 submitted_to_sgn_as:HBa0178J08.seq (contig 8) (whole contig)">
        <position start="97460" stop="91374"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97160" g_stop="97018" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="96521" g_stop="96401" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="264" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96310" g_stop="96157" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="418" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="96077" g_stop="95997" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="499" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="95895" g_stop="95784" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="500" r_stop="611" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="95701" g_stop="95575" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="738" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="95490" g_stop="95352" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="739" r_stop="877" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.451" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="94610" g_stop="94493" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="878" r_stop="995" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="94201" g_stop="94002" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="996" r_stop="1195" r_length="200" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="93898" g_stop="93683" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1196" r_stop="1411" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="93576" g_stop="93411" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1412" r_stop="1577" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="93330" g_stop="93189" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1578" r_stop="1719" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.953" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="93101" g_stop="92951" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1720" r_stop="1870" r_length="151" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.672" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="92711" g_stop="92310" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1871" r_stop="2272" r_length="402" r_score="1.000"/>
        </exon>
        <intron i_serial="14">
          <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="15">
          <gDNA_exon_boundary g_start="92224" g_stop="91675" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="2273" r_stop="2821" r_length="549" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2822" polyA_stop="2840"/>
      <MATCH_line gen_id="C04HBa0178J08.1" gen_strand="-" ref_id="SGN-U313810" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2822</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178J08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U313810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97160" e_stop="97018"/>
          <exon e_start="96521" e_stop="96401"/>
          <exon e_start="96310" e_stop="96157"/>
          <exon e_start="96077" e_stop="95997"/>
          <exon e_start="95895" e_stop="95784"/>
          <exon e_start="95701" e_stop="95575"/>
          <exon e_start="95490" e_stop="95352"/>
          <exon e_start="94610" e_stop="94493"/>
          <exon e_start="94201" e_stop="94002"/>
          <exon e_start="93898" e_stop="93683"/>
          <exon e_start="93576" e_stop="93411"/>
          <exon e_start="93330" e_stop="93189"/>
          <exon e_start="93101" e_stop="92951"/>
          <exon e_start="92711" e_stop="92310"/>
          <exon e_start="92224" e_stop="91675"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAGGTGAGTTAGGATTTATATCTTCCTTAATTTAAGCTTTCTGATGTATTTTATGCTCGTATGAACTTCATTGTCGAAGATTAGGGCTTTTTCCATATGTCGGACATTTCGCCAGTGTCGGATGATTTAATTTTATGTTGCGAGTAGATATATCGCGTTGAGATCTTACGGAACTCTACTGCAATAACTGCAATTTTTGTCGTGAAAATGCTTATAATATGACTTTCCTTAAGAATCATGTGAATTTTTAATTCAATTGCCGAGATTCTGTGTGTTGAGTAGTCACATCGAGTAGAGATCTTAAGGAGTATTATAGATGCTTAGATGAATGTTGCTAGATCCAGTACTCCATGAGTAGATTGTACTGGATTTCATAGTTTTAGCTGTTTCAGTTTAACAATTTTGTGAGGCTTTTATTGATCTGGTGCTGCTTGATATTTGGTACAACATACTACTTGTGTGATTTGCTTACATAGAAGTGTGTGGTTGTACTTGATAGGTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAGGTTAGTGAACTGCTTTTAATTCATTTCATCTGTTTACTGTGGTTTCATTTGTTCATTCAATATTAAGTACTGTGTTATTACGTGATTTAGGGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGATGTAAGTGTGCATTTTGGTGTCTGTTCTTCCACATCATTGGTAGAAGTTCTGTTCTGAAATTATTTGCTGTTTGATTCAGGCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAGGTTAGTGATTTGTATCATATTGAATTACTAAATATCTGTTGGTTATGCATTGAGAGTTTCTTTTTGAGCTCCTTTAATTGTGGCTATTTCATGGATTGCAGATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAGGTACTTTCTTATTCTTGACTTCATGTTCACCTAGTTGTCTTCAGATTGTGGACATCTATTTACAGTTATTATTGCTATACAGCTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACAGTATGTTGGAGTGAATGCATTTATTTTCTTTTTGATTGAAAGTTACTGGTGATGTAATACTTGCCTGTTAATATCTATGTACAGATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAGGTGAGTAGACAGAGATGCATACTGAAGTAAAATTTCTCCATATATTGTTAACGAATGGGTACATGTCATAGTTTTCATCTTTTATGAGTCATCACTCATCAATAACCCCCTTATTATCTTTTGTGATGGCTCTTGTATCAGGAATAGTAGGTCATGAATTTATATACTGCTGTAATAATTGGATATAAATAATCTTGACTTTGACATGACTTAAAATATATCTCTTCTATTGGTCCTCTTTTAACATCTGAACATAGAGTTTTAAATTTTTTTCCGGCAACAACTCAACCAAACTGTATTCTGCTACTACTAACACTTGATCATTTTTGTCAAGTTTAACAAAAGCGCATAGTCTAACAATATAGCAAGGGGTCAGTCATGCTCCTTAAGTTTTGGGTCATGATGAGTAAATGGAAAAGCTTATGGCTGATGGTAAATTTTCATTTTTTGAATTGAACAGAAGTACCTTAATACTTTGGGATGTTTCTGTTTTTGAATTTTCTATTTGTGCTGTTGTATCTTGGAGTTATGACACAATTAGCCCCTTCTAGACGGAGAAAAAGAACCCTGGTTTCTGTTGCCATCACCCTCTATTAGATTCATTCATAAATTTATGGGCAATAACTTTAGCTTTCTTGCTGTGAAATTGGTCTATGTTATTGCTGTTCTAACTTTGGGAGTTTACTCCTGTTTTGAGTTTCGACTCTTGAAGTGGATTAATCTACTATGCTATGATTTTAGGAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACATGTATGTATGATTCTCCTATCTTGACTTGCCAAGTATTGTTTGTGTTATTTATAAAAGAAGTGTTGTTTCAGAGTTAATCTCAGTCTGAATGTAGTATACTTGTTGAATGAGCTATTCCATCCTTCTTTTTCTTTCTGTATGGAGAAGAGTGGGGCGAGGACTGGTGAAAACTGACAAAGTAAACATAATAAGAGTAGGAAAGGAAGAAGAAAAGTCTGCTGCCTCATTTCCCATCTTCTTTACCTTTTCTTCTCTGTCAGTGGTCTTATCGTCTGTCAATGTTGTGAACAGCTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAGGTAATGTTCATATATTTCCTTCTAATGCAAATGTGGTTCAAGACTTGTAAGTTTCTTGACCATTGTTTTCCATATGCTGAAAATCTATTTGTTATTTTACCAGGACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATGGTAATTTTAGTTCATCTAATACTTCACTGGCATTATAACAAAATATCCTGATCTATTTAAACTTATATCTGAATTTTAACACTGATTGTGGTGACACTTATGCCAGGGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAGGTCTAATTCATATTCCTAAATTTGAAATTGTCTTATTAACTAAAAAGTATCTAATCTCATTCTTGGGTATGACACTACAGATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGACGTATGCTCTCTTCTTTTCCTTCAGTCTTTTACTTGATCGATTTGTTTTCAGTTATTAATTTGTTTCGTTTAATGTGCACTATTACAGAACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAGGTATGACTTCAATTTCAATTTAAACGATTAAATCTGAATTCCTTTTTGTGCCACTTTTGGGTTACAAAATTATTAGTTTTATCATAATTTTAGAGAACTATTCGTAAATGTTTTTCTTCATCATCGAATTCTCATATATATACATTCATAATTGAATTTTCATATATATATATATATATATATACATAAAATCTAGCCATGAAAACTCGTTCTCTAATTTGCCTTCTCTCACTTTCTAGGTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAGGTATGTCGTGTAGCCATGCTCTATCTTTTGTCAAATTCTAACTTACTTGGGAGTTTCATGGAGTTCATATTTTGTTGCTTTACAGGACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATG</genome_strand>
        <mrna_strand>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG..........................................................................................GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT...............................................................................GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG.....................................................................................................ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG..................................................................................CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA....................................................................................ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT...................................................................................................................................................................................................................................................................................................CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG.......................................................................................................GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG..........................................................................................................GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG................................................................................ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC.......................................................................................AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG...............................................................................................................................................................................................................................................GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG.....................................................................................GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTATTCATTCTAAATTTTACT-GAAAAATAAGTAGTGCTTGAGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="8023" PGL_stop="5006"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8023" e_stop="7555"/>
            <exon e_start="7255" e_stop="7204"/>
            <exon e_start="5608" e_stop="5452"/>
            <exon e_start="5301" e_stop="5079"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="0.998"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="0.994"/>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="8023" e_stop="7555" e_length="469"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7255" e_stop="7204" e_length="52"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="5608" e_stop="5452" e_length="157"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150"/>
          </intron>
          <exon e_serial="4" e_score="0.987">
            <gDNA_exon_boundary e_start="5301" e_stop="5079" e_length="223"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8023" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5079"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U337301" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAGTTGGTGTCAGTTTCAGAATTTCTTGTTTTTCTGATTCTGATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACGGTTCTTTTCTTTCTCAAGTTCTCTTTTTGTGTTTTTCTCCATGATTATTGTTTAATTTCAGTTGATCTCATATGGGTTTTTTTTATTTTTTTTTTATTTTTGGGGAAATTGTGATGTACTTGGCAGGTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTT</gDNA_template>
            <first_frame> N  S  W  C  Q  F  Q  N  F  L  F  F  *  F  *  *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H  G  S  F  L  S  Q  V  L  F  L  C  F  S  P  *  L  L  F  N  F  S  *  S  H  M  G  F  F  Y  F  F  F  I  F  G  E  I  V  M  Y  L  A  G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  </first_frame>
            <second_frame>  T  V  G  V  S  F  R  I  S  C  F  S  D  S  D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  V  L  F  F  L  K  F  S  F  C  V  F  L  H  D  Y  C  L  I  S  V  D  L  I  W  V  F  F  I  F  F  L  F  L  G  K  L  *  C  T  W  Q  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F </second_frame>
            <third_frame>   Q  L  V  S  V  S  E  F  L  V  F  L  I  L  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R  F  F  S  F  S  S  S  L  F  V  F  F  S  M  I  I  V  *  F  Q  L  I  S  Y  G  F  F  L  F  F  F  Y  F  W  G  N  C  D  V  L  G  R  *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7650" stop="7555"/>
                    <exon start="7255" stop="7204"/>
                    <exon start="5608" stop="5452"/>
                    <exon start="5301" stop="5280"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTWQVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7944" stop="7651"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVLFFLKFSFCVFLHDYCLISVDLIWVFFIFFLFLGKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="7980" e_stop="7765"/>
            <exon e_start="7638" e_stop="7555"/>
            <exon e_start="7255" e_stop="7204"/>
            <exon e_start="5608" e_stop="5452"/>
            <exon e_start="5301" e_stop="5006"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.945" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7980" e_stop="7765" e_length="216"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="1.000">
            <gDNA_intron_boundary i_start="7764" i_stop="7639" i_length="126"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="7638" e_stop="7555" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.957">
            <gDNA_intron_boundary i_start="7554" i_stop="7256" i_length="299"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7255" e_stop="7204" e_length="52"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.945">
            <gDNA_intron_boundary i_start="7203" i_stop="5609" i_length="1595"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="5608" e_stop="5452" e_length="157"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.648">
            <gDNA_intron_boundary i_start="5451" i_stop="5302" i_length="150"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5301" e_stop="5006" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7980" stop="7765"/>
              <exon start="7638" stop="7555"/>
              <exon start="7255" stop="7204"/>
              <exon start="5608" stop="5452"/>
              <exon start="5301" stop="5006"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321142" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATGATAGCAAAATCCATAGCTAAACTAAACATTGAAAGAAAAGGGAGGAAATGTTAACAGCACCTTCACTTTCCCGCTTTAAGTCTCCATTTATCAGCTCACCTCTTAAGCTTCCTACTCTTTCTTCTTCTTTTTTCACTCAGAAATTTCATCAAACATGTCGTAGGCGAAATTCGTACCCATGTATTAAAGCTGTGGATCTTGATCAAAACACG : GTGATAGCAATTACAGTTGGGGTGCTCAGTGTTGCTATTGGAGTTGGAATTCCAGTTTTTTATGAGACCCAAATTGATAATGCT : GCAAAAAGAGAGAACACTCAGCCCTGCTTCCCCTGCACTGGCACTGGTGCTC : AGAAATGCAGATTTTGCATGGGTACTGGCAGTGTGACGGTGGAGCTTGGAGGGGGTGAGACAGAAGTCTCTCGGTGCATCAATTGTGACGGTGCTGGTGGTTTGACTTGCACAACATGTCAAGGCAGTGGCATTCAACCTCGGTACCTTGATCGCAG : GGAATTCAAGGACGATGATTAGATATGGAAGAATACTCAGCATGGATGCCACAACTTGTTTATTGTCTAGAAGACCTGTCATTTTGACCTGAATATATTGACACAAAATTGTGTAAAATTCATTTATGTTCATCCCCTCTCTCTGCCTTTCTCAGTTTTCACATATTCCTTTCACCTTCTGTTCTTACATGTAATCTTTAACAAGTTGAGCAATACATGATTTCAATACCAGCTTTGTCCAATTGCTAGATGTTGTAAATGAAATTGAGCACCTGTGTGTATTGCATTTTAAAAAA</gDNA_template>
            <first_frame> D  D  S  K  I  H  S  *  T  K  H  *  K  K  R  E  E  M  L  T  A  P  S  L  S  R  F  K  S  P  F  I  S  S  P  L  K  L  P  T  L  S  S  S  F  F  T  Q  K  F  H  Q  T  C  R  R  R  N  S  Y  P  C  I  K  A  V  D  L  D  Q  N  T  :  V  I  A  I  T  V  G  V  L  S  V  A  I  G  V  G  I  P  V  F  Y  E  T  Q  I  D  N  A  :  A  K  R  E  N  T  Q  P  C  F  P  C  T  G  T  G  A   : Q  K  C  R  F  C  M  G  T  G  S  V  T  V  E  L  G  G  G  E  T  E  V  S  R  C  I  N  C  D  G  A  G  G  L  T  C  T  T  C  Q  G  S  G  I  Q  P  R  Y  L  D  R  R :   E  F  K  D  D  D  *  I  W  K  N  T  Q  H  G  C  H  N  L  F  I  V  *  K  T  C  H  F  D  L  N  I  L  T  Q  N  C  V  K  F  I  Y  V  H  P  L  S  L  P  F  S  V  F  T  Y  S  F  H  L  L  F  L  H  V  I  F  N  K  L  S  N  T  *  F  Q  Y  Q  L  C  P  I  A  R  C  C  K  *  N  *  A  P  V  C  I  A  F  *  K  </first_frame>
            <second_frame>  M  I  A  K  S  I  A  K  L  N  I  E  R  K  G  R  K  C  *  Q  H  L  H  F  P  A  L  S  L  H  L  S  A  H  L  L  S  F  L  L  F  L  L  L  F  S  L  R  N  F  I  K  H  V  V  G  E  I  R  T  H  V  L  K  L  W  I  L  I  K  T  R :   *  *  Q  L  Q  L  G  C  S  V  L  L  L  E  L  E  F  Q  F  F  M  R  P  K  L  I  M  L :   Q  K  E  R  T  L  S  P  A  S  P  A  L  A  L  V  L  :  R  N  A  D  F  A  W  V  L  A  V  *  R  W  S  L  E  G  V  R  Q  K  S  L  G  A  S  I  V  T  V  L  V  V  *  L  A  Q  H  V  K  A  V  A  F  N  L  G  T  L  I  A   : G  N  S  R  T  M  I  R  Y  G  R  I  L  S  M  D  A  T  T  C  L  L  S  R  R  P  V  I  L  T  *  I  Y  *  H  K  I  V  *  N  S  F  M  F  I  P  S  L  C  L  S  Q  F  S  H  I  P  F  T  F  C  S  Y  M  *  S  L  T  S  *  A  I  H  D  F  N  T  S  F  V  Q  L  L  D  V  V  N  E  I  E  H  L  C  V  L  H  F  K  K </second_frame>
            <third_frame>   *  *  Q  N  P  *  L  N  *  T  L  K  E  K  G  G  N  V  N  S  T  F  T  F  P  L  *  V  S  I  Y  Q  L  T  S  *  A  S  Y  S  F  F  F  F  F  H  S  E  I  S  S  N  M  S  *  A  K  F  V  P  M  Y  *  S  C  G  S  *  S  K  H   : G  D  S  N  Y  S  W  G  A  Q  C  C  Y  W  S  W  N  S  S  F  L  *  D  P  N  *  *  C   : C  K  K  R  E  H  S  A  L  L  P  L  H  W  H  W  C  S :   E  M  Q  I  L  H  G  Y  W  Q  C  D  G  G  A  W  R  G  *  D  R  S  L  S  V  H  Q  L  *  R  C  W  W  F  D  L  H  N  M  S  R  Q  W  H  S  T  S  V  P  *  S  Q  :  G  I  Q  G  R  *  L  D  M  E  E  Y  S  A  W  M  P  Q  L  V  Y  C  L  E  D  L  S  F  *  P  E  Y  I  D  T  K  L  C  K  I  H  L  C  S  S  P  L  S  A  F  L  S  F  H  I  F  L  S  P  S  V  L  T  C  N  L  *  Q  V  E  Q  Y  M  I  S  I  P  A  L  S  N  C  *  M  L  *  M  K  L  S  T  C  V  Y  C  I  L  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7944" stop="7765"/>
                    <exon start="7638" stop="7555"/>
                    <exon start="7255" stop="7204"/>
                    <exon start="5608" stop="5452"/>
                    <exon start="5301" stop="5280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKREEMLTAPSLSRFKSPFISSPLKLPTLSSSFFTQKFHQTCRRRNSYPCIKAVDLDQNTVIAITVGVLSVAIGVGIPVFYETQIDNAAKRENTQPCFPCTGTGAQKCRFCMGTGSVTVELGGGETEVSRCINCDGAGGLTCTTCQGSGIQPRYLDRREFKDDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11960" PGL_stop="8614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11960" e_stop="11943"/>
            <exon e_start="11667" e_stop="11619"/>
            <exon e_start="11527" e_stop="11394"/>
            <exon e_start="10983" e_stop="10911"/>
            <exon e_start="10343" e_stop="10261"/>
            <exon e_start="9526" e_stop="9488"/>
            <exon e_start="9371" e_stop="9301"/>
            <exon e_start="9233" e_stop="9119"/>
            <exon e_start="9042" e_stop="8614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="0.667"/>
          <exon-intron don_prob="0.969" acc_prob="1.000" e_score="0.939"/>
          <exon-intron don_prob="0.996" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.973"/>
          <exon-intron don_prob="0.986" acc_prob="0.939" e_score="0.988"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.908" acc_prob="0.812" e_score="1.000"/>
          <exon-intron don_prob="0.865" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.667">
            <gDNA_exon_boundary e_start="11960" e_stop="11943" e_length="18"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11942" i_stop="11668" i_length="275"/>
          </intron>
          <exon e_serial="2" e_score="0.939">
            <gDNA_exon_boundary e_start="11667" e_stop="11619" e_length="49"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="1.000">
            <gDNA_intron_boundary i_start="11618" i_stop="11528" i_length="91"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11527" e_stop="11394" e_length="134"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.991">
            <gDNA_intron_boundary i_start="11393" i_stop="10984" i_length="410"/>
          </intron>
          <exon e_serial="4" e_score="0.973">
            <gDNA_exon_boundary e_start="10983" e_stop="10911" e_length="73"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="10910" i_stop="10344" i_length="567"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="10343" e_stop="10261" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.939">
            <gDNA_intron_boundary i_start="10260" i_stop="9527" i_length="734"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="9526" e_stop="9488" e_length="39"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="9487" i_stop="9372" i_length="116"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="9371" e_stop="9301" e_length="71"/>
          </exon>
          <intron i_serial="7" don_prob="0.908" acc_prob="0.812">
            <gDNA_intron_boundary i_start="9300" i_stop="9234" i_length="67"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="9233" e_stop="9119" e_length="115"/>
          </exon>
          <intron i_serial="8" don_prob="0.865" acc_prob="0.982">
            <gDNA_intron_boundary i_start="9118" i_stop="9043" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="0.956">
            <gDNA_exon_boundary e_start="9042" e_stop="8614" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11960" stop="11943"/>
              <exon start="11667" stop="11619"/>
              <exon start="11527" stop="11394"/>
              <exon start="10983" stop="10911"/>
              <exon start="10343" stop="10261"/>
              <exon start="9526" stop="9488"/>
              <exon start="9371" stop="9301"/>
              <exon start="9233" stop="9119"/>
              <exon start="9042" stop="8614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319020" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8996" stop="8699"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCGCAACTTTCTCTATA : ATGGAGAGCGCTCTTCTCTCTGCTTCCCGCTTCACTACTGCTCTGCACA : AAGCAGAAAGAGAAGTAGTAGGTGGACCTGTGGCTGTGAGGAAATTACAGAGCTCATTCTATGGCAAAGAGATTAATAGTCATACTCTTTTCACTAAAAACTTCAAAAAAATCAATCTCACTATCACCTCAGTG : ATGCGGAAGAAACTGATAAAGAAGGAGACTGTTGTTCCTGATCCAGATTACCGAATTCCTATTGTCCTTCTAG : GGTTATCTGGTGGTTTATTTTATGTGGAAAATCTACCCGCAGCAGTTCCTATTGGTCTTCTTGGATTACTCCTGTTATTCCAG : ACAACAAGAGTGAGATTTGTCTTTGATGATGAGGCTCTG : GAGGTGAAAGTTGGGGAGCAACTCGAGGAGTCAGGTGAAAATGTTTTCGTGGGTGGAAAGAACCGCTGGAA : ATATTCTTCATTTGTGAACTGGGAGCTATGGTGGCCAAACTTTCCGATTTTGGTTTATTTTAAAGAGAAACAGACAAAACCCGAGGGACAAATACACTTTTTCCCAGTGATTTTT : AACGGGAGGCAACTGTACGATGCTATGGTGGAGAGATGTGGCCCTTCAAAAACTAGCGGACCAAAGTAGTGCAACATGAGCTCCAGGGAGAAGACGAATATGAGCCAGACAAACCATACAATCAGAATTTGTGGCAAAGGTATGAAGCTCAACGAGGTTAAGGAACTCGTCAGTTGAGTCACAAGATGTGGTTTCATCAATTAATGTATATTCCCTTTCATGTTTTTACACGTCTGTAAAATCACAAAGATAAACTATCAATCTGAGTATGTGTCACAACTCACAAAATCATGTATTATATGTATCACCATTACTGTATGAAAGGCGGTAACTGGATGCAAACTATATGTATTCACATTTGGAATGTGTTACAAATTCTAGCTCATATATTGTATCATACATTTTACAGTTCTAACATATAATTTGGTT</gDNA_template>
            <first_frame> L  A  T  F  S  I  :  M  E  S  A  L  L  S  A  S  R  F  T  T  A  L  H   : K  A  E  R  E  V  V  G  G  P  V  A  V  R  K  L  Q  S  S  F  Y  G  K  E  I  N  S  H  T  L  F  T  K  N  F  K  K  I  N  L  T  I  T  S  V  :  M  R  K  K  L  I  K  K  E  T  V  V  P  D  P  D  Y  R  I  P  I  V  L  L   : G  L  S  G  G  L  F  Y  V  E  N  L  P  A  A  V  P  I  G  L  L  G  L  L  L  L  F  Q  :  T  T  R  V  R  F  V  F  D  D  E  A  L  :  E  V  K  V  G  E  Q  L  E  E  S  G  E  N  V  F  V  G  G  K  N  R  W  K :   Y  S  S  F  V  N  W  E  L  W  W  P  N  F  P  I  L  V  Y  F  K  E  K  Q  T  K  P  E  G  Q  I  H  F  F  P  V  I  F  :  N  G  R  Q  L  Y  D  A  M  V  E  R  C  G  P  S  K  T  S  G  P  K  *  C  N  M  S  S  R  E  K  T  N  M  S  Q  T  N  H  T  I  R  I  C  G  K  G  M  K  L  N  E  V  K  E  L  V  S  *  V  T  R  C  G  F  I  N  *  C  I  F  P  F  M  F  L  H  V  C  K  I  T  K  I  N  Y  Q  S  E  Y  V  S  Q  L  T  K  S  C  I  I  C  I  T  I  T  V  *  K  A  V  T  G  C  K  L  Y  V  F  T  F  G  M  C  Y  K  F  *  L  I  Y  C  I  I  H  F  T  V  L  T  Y  N  L  V </first_frame>
            <second_frame>  S  Q  L  S  L  * :   W  R  A  L  F  S  L  L  P  A  S  L  L  L  C  T  :  K  Q  K  E  K  *  *  V  D  L  W  L  *  G  N  Y  R  A  H  S  M  A  K  R  L  I  V  I  L  F  S  L  K  T  S  K  K  S  I  S  L  S  P  Q  * :   C  G  R  N  *  *  R  R  R  L  L  F  L  I  Q  I  T  E  F  L  L  S  F  *  :  G  Y  L  V  V  Y  F  M  W  K  I  Y  P  Q  Q  F  L  L  V  F  L  D  Y  S  C  Y  S  R :   Q  Q  E  *  D  L  S  L  M  M  R  L  W :   R  *  K  L  G  S  N  S  R  S  Q  V  K  M  F  S  W  V  E  R  T  A  G   : N  I  L  H  L  *  T  G  S  Y  G  G  Q  T  F  R  F  W  F  I  L  K  R  N  R  Q  N  P  R  D  K  Y  T  F  S  Q  *  F  L :   T  G  G  N  C  T  M  L  W  W  R  D  V  A  L  Q  K  L  A  D  Q  S  S  A  T  *  A  P  G  R  R  R  I  *  A  R  Q  T  I  Q  S  E  F  V  A  K  V  *  S  S  T  R  L  R  N  S  S  V  E  S  Q  D  V  V  S  S  I  N  V  Y  S  L  S  C  F  Y  T  S  V  K  S  Q  R  *  T  I  N  L  S  M  C  H  N  S  Q  N  H  V  L  Y  V  S  P  L  L  Y  E  R  R  *  L  D  A  N  Y  M  Y  S  H  L  E  C  V  T  N  S  S  S  Y  I  V  S  Y  I  L  Q  F  *  H  I  I  W   </second_frame>
            <third_frame>   R  N  F  L  Y   : N  G  E  R  S  S  L  C  F  P  L  H  Y  C  S  A  Q :   S  R  K  R  S  S  R  W  T  C  G  C  E  E  I  T  E  L  I  L  W  Q  R  D  *  *  S  Y  S  F  H  *  K  L  Q  K  N  Q  S  H  Y  H  L  S   : D  A  E  E  T  D  K  E  G  D  C  C  S  *  S  R  L  P  N  S  Y  C  P  S  R :   V  I  W  W  F  I  L  C  G  K  S  T  R  S  S  S  Y  W  S  S  W  I  T  P  V  I  P   : D  N  K  S  E  I  C  L  *  *  *  G  S   : G  G  E  S  W  G  A  T  R  G  V  R  *  K  C  F  R  G  W  K  E  P  L  E  :  I  F  F  I  C  E  L  G  A  M  V  A  K  L  S  D  F  G  L  F  *  R  E  T  D  K  T  R  G  T  N  T  L  F  P  S  D  F   : *  R  E  A  T  V  R  C  Y  G  G  E  M  W  P  F  K  N  *  R  T  K  V  V  Q  H  E  L  Q  G  E  D  E  Y  E  P  D  K  P  Y  N  Q  N  L  W  Q  R  Y  E  A  Q  R  G  *  G  T  R  Q  L  S  H  K  M  W  F  H  Q  L  M  Y  I  P  F  H  V  F  T  R  L  *  N  H  K  D  K  L  S  I  *  V  C  V  T  T  H  K  I  M  Y  Y  M  Y  H  H  Y  C  M  K  G  G  N  W  M  Q  T  I  C  I  H  I  W  N  V  L  Q  I  L  A  H  I  L  Y  H  T  F  Y  S  S  N  I  *  F  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11960" stop="11943"/>
                    <exon start="11667" stop="11619"/>
                    <exon start="11527" stop="11394"/>
                    <exon start="10983" stop="10911"/>
                    <exon start="10343" stop="10261"/>
                    <exon start="9526" stop="9488"/>
                    <exon start="9371" stop="9301"/>
                    <exon start="9233" stop="9119"/>
                    <exon start="9042" stop="8974"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LATFSIMESALLSASRFTTALHKAEREVVGGPVAVRKLQSSFYGKEINSHTLFTKNFKKINLTITSVMRKKLIKKETVVPDPDYRIPIVLLGLSGGLFYVENLPAAVPIGLLGLLLLFQTTRVRFVFDDEALEVKVGEQLEESGENVFVGGKNRWKYSSFVNWELWWPNFPILVYFKEKQTKPEGQIHFFPVIFNGRQLYDAMVERCGPSKTSGPK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18017" PGL_stop="18444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18017" e_stop="18444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.986">
            <gDNA_exon_boundary e_start="18017" e_stop="18444" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18017" stop="18444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332355" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAGACAAGGACCTCAAACAACCCTTGATTTATGTCATCAAGTACTTAACCCCCCATGGTAATTTGAATATGTAGTTTATATACATCGGAAAAAGGATTGGTTCTTCAATGTACATCTGGCATATCTTAGTTCATTCATTACTGTTGTCCATGATTTTTTAGCATGGCTCGAAAAGTATAAGGGTCGTCGAGTGTGTAGGATTGCCAGATGCAATTACCATTCATTATTAAATATCCAAATTATAGTACTTACGTTTGTGTGAAGGTGGGAAAATGATCATGAATCTATGAAGTTAAGAGTTATCTTAGAGGATCACTGTACATACATATAAACATCTGGTTCTTGAGATGGCTTGGTTGATGTACTGAATGGTAATTGGAATGGGACTGGGCTTCTATAATTGTATCTCTTCTAATAAACTTTTGAA</gDNA_template>
            <first_frame> K  D  K  D  L  K  Q  P  L  I  Y  V  I  K  Y  L  T  P  H  G  N  L  N  M  *  F  I  Y  I  G  K  R  I  G  S  S  M  Y  I  W  H  I  L  V  H  S  L  L  L  S  M  I  F  *  H  G  S  K  S  I  R  V  V  E  C  V  G  L  P  D  A  I  T  I  H  Y  *  I  S  K  L  *  Y  L  R  L  C  E  G  G  K  M  I  M  N  L  *  S  *  E  L  S  *  R  I  T  V  H  T  Y  K  H  L  V  L  E  M  A  W  L  M  Y  *  M  V  I  G  M  G  L  G  F  Y  N  C  I  S  S  N  K  L  L   </first_frame>
            <second_frame>  K  T  R  T  S  N  N  P  *  F  M  S  S  S  T  *  P  P  M  V  I  *  I  C  S  L  Y  T  S  E  K  G  L  V  L  Q  C  T  S  G  I  S  *  F  I  H  Y  C  C  P  *  F  F  S  M  A  R  K  V  *  G  S  S  S  V  *  D  C  Q  M  Q  L  P  F  I  I  K  Y  P  N  Y  S  T  Y  V  C  V  K  V  G  K  *  S  *  I  Y  E  V  K  S  Y  L  R  G  S  L  Y  I  H  I  N  I  W  F  L  R  W  L  G  *  C  T  E  W  *  L  E  W  D  W  A  S  I  I  V  S  L  L  I  N  F  *  </second_frame>
            <third_frame>   R  Q  G  P  Q  T  T  L  D  L  C  H  Q  V  L  N  P  P  W  *  F  E  Y  V  V  Y  I  H  R  K  K  D  W  F  F  N  V  H  L  A  Y  L  S  S  F  I  T  V  V  H  D  F  L  A  W  L  E  K  Y  K  G  R  R  V  C  R  I  A  R  C  N  Y  H  S  L  L  N  I  Q  I  I  V  L  T  F  V  *  R  W  E  N  D  H  E  S  M  K  L  R  V  I  L  E  D  H  C  T  Y  I  *  T  S  G  S  *  D  G  L  V  D  V  L  N  G  N  W  N  G  T  G  L  L  *  L  Y  L  F  *  *  T  F  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18079" stop="18279"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FEYVVYIHRKKDWFFNVHLAYLSSFITVVHDFLAWLEKYKGRRVCRIARCNYHSLLNIQIIVLTFV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="20155" PGL_stop="19151"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="20155" e_stop="20103"/>
            <exon e_start="19908" e_stop="19734"/>
            <exon e_start="19444" e_stop="19151"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.650" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20155" e_stop="20103" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.650">
            <gDNA_intron_boundary i_start="20102" i_stop="19909" i_length="194"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="19908" e_stop="19734" e_length="175"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="19733" i_stop="19445" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="19444" e_stop="19151" e_length="294"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20155" stop="20103"/>
              <exon start="19908" stop="19734"/>
              <exon start="19444" stop="19151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345641" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATAAGCTTATTCTTAGAAGCACAACAGGGCCGATAGATTTGTTTCTCTTGAG : CAAACAGGGTAGGCAGCATGAGGACATAACCATCAAACATGACAAGTCCATGGATTCAGTGTCTGCTGCAAAAAAGATGGATGATGCTTACCCATCCCCAGCACATCCTTGCTCTTTAGATTCAACAGACTCAAAGCTCTCGGGTGTCCATAAAATAGTACCTTCTCATAACAGT : ATAGATGATGATTACTGGTTGCGCTCGGAGGAGGCGGTTAGCGCAACTGCTCTGTGGGGCATTGAATAATCTTTAAAATTGAGCCTGGTTACAAACTCCATATATGGATACCAGAAGATATACAGAAATAAGGCTTCTTATAAACATGTAAATATCTTTTGAAGCTAAAAAGCTTTACATATCTCTAGCCAGATTATAGTAAGAAACAACTGGTTTCAGGGAAACTCCTACAACTTTTGCGTACAACTATATGGTTCACAGGAATATCAGTCTTATGATTAACCAATGCTGGGA</gDNA_template>
            <first_frame> Y  K  L  I  L  R  S  T  T  G  P  I  D  L  F  L  L  S :   K  Q  G  R  Q  H  E  D  I  T  I  K  H  D  K  S  M  D  S  V  S  A  A  K  K  M  D  D  A  Y  P  S  P  A  H  P  C  S  L  D  S  T  D  S  K  L  S  G  V  H  K  I  V  P  S  H  N  S  :  I  D  D  D  Y  W  L  R  S  E  E  A  V  S  A  T  A  L  W  G  I  E  *  S  L  K  L  S  L  V  T  N  S  I  Y  G  Y  Q  K  I  Y  R  N  K  A  S  Y  K  H  V  N  I  F  *  S  *  K  A  L  H  I  S  S  Q  I  I  V  R  N  N  W  F  Q  G  N  S  Y  N  F  C  V  Q  L  Y  G  S  Q  E  Y  Q  S  Y  D  *  P  M  L  G </first_frame>
            <second_frame>  I  S  L  F  L  E  A  Q  Q  G  R  *  I  C  F  S  *   : A  N  R  V  G  S  M  R  T  *  P  S  N  M  T  S  P  W  I  Q  C  L  L  Q  K  R  W  M  M  L  T  H  P  Q  H  I  L  A  L  *  I  Q  Q  T  Q  S  S  R  V  S  I  K  *  Y  L  L  I  T  V :   *  M  M  I  T  G  C  A  R  R  R  R  L  A  Q  L  L  C  G  A  L  N  N  L  *  N  *  A  W  L  Q  T  P  Y  M  D  T  R  R  Y  T  E  I  R  L  L  I  N  M  *  I  S  F  E  A  K  K  L  Y  I  S  L  A  R  L  *  *  E  T  T  G  F  R  E  T  P  T  T  F  A  Y  N  Y  M  V  H  R  N  I  S  L  M  I  N  Q  C  W   </second_frame>
            <third_frame>   *  A  Y  S  *  K  H  N  R  A  D  R  F  V  S  L  E  :  Q  T  G  *  A  A  *  G  H  N  H  Q  T  *  Q  V  H  G  F  S  V  C  C  K  K  D  G  *  C  L  P  I  P  S  T  S  L  L  F  R  F  N  R  L  K  A  L  G  C  P  *  N  S  T  F  S  *  Q   : Y  R  *  *  L  L  V  A  L  G  G  G  G  *  R  N  C  S  V  G  H  *  I  I  F  K  I  E  P  G  Y  K  L  H  I  W  I  P  E  D  I  Q  K  *  G  F  L  *  T  C  K  Y  L  L  K  L  K  S  F  T  Y  L  *  P  D  Y  S  K  K  Q  L  V  S  G  K  L  L  Q  L  L  R  T  T  I  W  F  T  G  I  S  V  L  *  L  T  N  A  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20155" stop="20103"/>
                    <exon start="19908" stop="19734"/>
                    <exon start="19444" stop="19376"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>294</number_coding_nucleotides>
                  <number_encoded_amino_acids>98</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKLILRSTTGPIDLFLLSKQGRQHEDITIKHDKSMDSVSAAKKMDDAYPSPAHPCSLDSTDSKLSGVHKIVPSHNSIDDDYWLRSEEAVSATALWGIE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="33111" PGL_stop="27084"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33111" e_stop="32868"/>
            <exon e_start="32713" e_stop="32586"/>
            <exon e_start="31576" e_stop="31468"/>
            <exon e_start="31029" e_stop="30948"/>
            <exon e_start="30877" e_stop="30807"/>
            <exon e_start="30129" e_stop="30088"/>
            <exon e_start="29805" e_stop="29681"/>
            <exon e_start="29377" e_stop="29284"/>
            <exon e_start="29129" e_stop="29063"/>
            <exon e_start="28950" e_stop="28763"/>
            <exon e_start="28680" e_stop="28575"/>
            <exon e_start="28027" e_stop="27941"/>
            <exon e_start="27563" e_stop="27084"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.972" e_score="0.996"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.615" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.976" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.982" e_score="0.992"/>
          <exon-intron don_prob="0.875" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.729" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.145" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="33111" e_stop="32868" e_length="244"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.972">
            <gDNA_intron_boundary i_start="32867" i_stop="32714" i_length="154"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32713" e_stop="32586" e_length="128"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32585" i_stop="31577" i_length="1009"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31576" e_stop="31468" e_length="109"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="31467" i_stop="31030" i_length="438"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31029" e_stop="30948" e_length="82"/>
          </exon>
          <intron i_serial="4" don_prob="0.615" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30947" i_stop="30878" i_length="70"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30877" e_stop="30807" e_length="71"/>
          </exon>
          <intron i_serial="5" don_prob="0.974" acc_prob="0.976">
            <gDNA_intron_boundary i_start="30806" i_stop="30130" i_length="677"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="30129" e_stop="30088" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.917">
            <gDNA_intron_boundary i_start="30087" i_stop="29806" i_length="282"/>
          </intron>
          <exon e_serial="7" e_score="0.992">
            <gDNA_exon_boundary e_start="29805" e_stop="29681" e_length="125"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.982">
            <gDNA_intron_boundary i_start="29680" i_stop="29378" i_length="303"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="29377" e_stop="29284" e_length="94"/>
          </exon>
          <intron i_serial="8" don_prob="0.875" acc_prob="0.990">
            <gDNA_intron_boundary i_start="29283" i_stop="29130" i_length="154"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="29129" e_stop="29063" e_length="67"/>
          </exon>
          <intron i_serial="9" don_prob="0.998" acc_prob="0.729">
            <gDNA_intron_boundary i_start="29062" i_stop="28951" i_length="112"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="28950" e_stop="28763" e_length="188"/>
          </exon>
          <intron i_serial="10" don_prob="0.994" acc_prob="0.984">
            <gDNA_intron_boundary i_start="28762" i_stop="28681" i_length="82"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="28680" e_stop="28575" e_length="106"/>
          </exon>
          <intron i_serial="11" don_prob="0.989" acc_prob="0.995">
            <gDNA_intron_boundary i_start="28574" i_stop="28028" i_length="547"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="28027" e_stop="27941" e_length="87"/>
          </exon>
          <intron i_serial="12" don_prob="0.145" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27940" i_stop="27564" i_length="377"/>
          </intron>
          <exon e_serial="13" e_score="0.998">
            <gDNA_exon_boundary e_start="27563" e_stop="27084" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33111" stop="32868"/>
              <exon start="32713" stop="32586"/>
              <exon start="31576" stop="31468"/>
              <exon start="31029" stop="30948"/>
              <exon start="30877" stop="30807"/>
              <exon start="30129" stop="30088"/>
              <exon start="29805" stop="29681"/>
              <exon start="29377" stop="29284"/>
              <exon start="29129" stop="29063"/>
              <exon start="28950" stop="28763"/>
              <exon start="28680" stop="28575"/>
              <exon start="28027" stop="27941"/>
              <exon start="27563" stop="27084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324470" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATCGTTTAGGGTTCTAGGGTTTAAACTAACAGAGAACTGAAGCTTATAGTGTAACTTCCTTCTCTACTGCTTCATCTAATGCTTAAAGATTGAATTTTTAGCAGCAAAAATGTCTATTGAAGAAGCAGTTGATGAGGATTCGAAGCAAAATCATAATAGTAGATTAACTTATGAAGGTTGCAATGTATTGCTTGACATCAATGATGGCGACCGTTTAGTTTTTTCTCGTCTTACTGCTGCCTC : GACATTGAAAATTGGGAATAAGAAGTGTTCTCTTCAGCCTCTTATAGGTTGTCCATTCGGGTCTCTGTTTCAAGTGGAGCCGGGAAAAGAAGGAACCTTTTTGACTCGTTTTGTTGAGAATGCAGAAG : GTAACGGCCTTGAAGAAAAAGACGTGGATGGATCTAAAGACAACCGTGCGCTTGTTGATAATAATACTGCTCAGAGTCTCACTAGTGAAGATATTGACGAGATGCGAAA : GCAGGGAGCAAAAGGGGATGAAATAGTTGAAGCACTCATTGCAAACAGTGCAACTTTTGAGAAGAAGACATTATTTTCACAA : GATAAGTATAGGGTTAAGAAACAGAAGAAATATGCACCTCGAGTACTTTTGAGGCGCCCCTTTGCACGAAG : CATTTGTGAGGCCTACTTCAAGAAACATCCTGAAAAAATCGG : ATTCATGCGAGTGGATGCACTATCTCTACTGCTCTCCTTGGGGAATGTTACTGCAAATGCAGATGTACTTGTAGTGGACATGCTCAGTGGTATTCTTACTGGTGCTATTGCAGAACGACTTGGAG : GTACTGGTTATGTGTGCAATACTTATCGTGGATCATCACCATATCCTGTCGATATCACAAGGATGTTTAATTTAAGCGATGAAATCTGTAAAAG : AATCGTGCATGCATCACTGACCGACCTGAATTCATTTCAAACTGGAGCTTCAGTGTCTGAGGGTCAG : GAAGAAACCTTACCTGTCACTCATTCTGGTGGTCTAGACGAAGTTAGTGTGCCAGCTGAAGATGGTGGCATGGATGTAACACCTGAGAGAGTTTCTTCTCCAATAATCAAGCCTGTTAAATCTATAAAAGCAGGTCAGAAAGCAACCCTCGAGGCCATCAAGTCGTGGAAAGAAAACGGTTTTTCCAG : CCTAATAATTGCTGCTCCGGAACTGGACCCATGGGGCATTATTAAAGAAGTGCTTCCTCTTTTATCATTTTCAGCTCCTTTTGCTGTTTATCACCAGTATGCTCAG : CCCCTAGCTACGTGTATGCACAACCTGCAGATTGAGAAAATGGCGATTGGATTACAAATTTCTGAACCTTGGCTACGTGAATATCAG : GTACTCCCATCAAGAACCCATCCACATATGCAGATGAGCGCGTTTGGTGGTTATATACTAAGTGGCACGAAAATATCGAGCAGTGACTCCCTTACCAGCTCTAACTAGGATAAATTTTTTTGGCATCTCACTCTGCTTGGTTGTACATGTCGCTTGACGATACCATTTTCGTCTTTCGAGAATATTCCCTGTTAGAATAGATGTAGGGATTATCTTGTCTCTTTTCTGGGGCAGAAACAAGGTTACTCATGTTGTACTTTTATTCATTGATTGATGTATGCTTGCTTTTGTATGAGCAATTCTTCTAAATCAAAAGACTAAAGGGTCTTTTTCCTCTTACTTTATAAAGTATTTGAAGATTAAGTGGTAAATTGTAGAATTATATTGTTGTCTTTCTTGGATCAAGCAATTGAAGTCTGTTTTGTTGAAGAAATATAAAATATGTAATACAACATTAACAATTATTCTTCAACTCCAAAC</gDNA_template>
            <first_frame> H  R  L  G  F  *  G  L  N  *  Q  R  T  E  A  Y  S  V  T  S  F  S  T  A  S  S  N  A  *  R  L  N  F  *  Q  Q  K  C  L  L  K  K  Q  L  M  R  I  R  S  K  I  I  I  V  D  *  L  M  K  V  A  M  Y  C  L  T  S  M  M  A  T  V  *  F  F  L  V  L  L  L  P   : R  H  *  K  L  G  I  R  S  V  L  F  S  L  L  *  V  V  H  S  G  L  C  F  K  W  S  R  E  K  K  E  P  F  *  L  V  L  L  R  M  Q  K  :  V  T  A  L  K  K  K  T  W  M  D  L  K  T  T  V  R  L  L  I  I  I  L  L  R  V  S  L  V  K  I  L  T  R  C  E   : S  R  E  Q  K  G  M  K  *  L  K  H  S  L  Q  T  V  Q  L  L  R  R  R  H  Y  F  H  K :   I  S  I  G  L  R  N  R  R  N  M  H  L  E  Y  F  *  G  A  P  L  H  E   : A  F  V  R  P  T  S  R  N  I  L  K  K  S   : D  S  C  E  W  M  H  Y  L  Y  C  S  P  W  G  M  L  L  Q  M  Q  M  Y  L  *  W  T  C  S  V  V  F  L  L  V  L  L  Q  N  D  L  E  :  V  L  V  M  C  A  I  L  I  V  D  H  H  H  I  L  S  I  S  Q  G  C  L  I  *  A  M  K  S  V  K   : E  S  C  M  H  H  *  P  T  *  I  H  F  K  L  E  L  Q  C  L  R  V  R :   K  K  P  Y  L  S  L  I  L  V  V  *  T  K  L  V  C  Q  L  K  M  V  A  W  M  *  H  L  R  E  F  L  L  Q  *  S  S  L  L  N  L  *  K  Q  V  R  K  Q  P  S  R  P  S  S  R  G  K  K  T  V  F  P   : A  *  *  L  L  L  R  N  W  T  H  G  A  L  L  K  K  C  F  L  F  Y  H  F  Q  L  L  L  L  F  I  T  S  M  L  S :   P  *  L  R  V  C  T  T  C  R  L  R  K  W  R  L  D  Y  K  F  L  N  L  G  Y  V  N  I  R :   Y  S  H  Q  E  P  I  H  I  C  R  *  A  R  L  V  V  I  Y  *  V  A  R  K  Y  R  A  V  T  P  L  P  A  L  T  R  I  N  F  F  G  I  S  L  C  L  V  V  H  V  A  *  R  Y  H  F  R  L  S  R  I  F  P  V  R  I  D  V  G  I  I  L  S  L  F  W  G  R  N  K  V  T  H  V  V  L  L  F  I  D  *  C  M  L  A  F  V  *  A  I  L  L  N  Q  K  T  K  G  S  F  S  S  Y  F  I  K  Y  L  K  I  K  W  *  I  V  E  L  Y  C  C  L  S  W  I  K  Q  L  K  S  V  L  L  K  K  Y  K  I  C  N  T  T  L  T  I  I  L  Q  L  Q   </first_frame>
            <second_frame>  I  V  *  G  S  R  V  *  T  N  R  E  L  K  L  I  V  *  L  P  S  L  L  L  H  L  M  L  K  D  *  I  F  S  S  K  N  V  Y  *  R  S  S  *  *  G  F  E  A  K  S  *  *  *  I  N  L  *  R  L  Q  C  I  A  *  H  Q  *  W  R  P  F  S  F  F  S  S  Y  C  C  L  :  D  I  E  N  W  E  *  E  V  F  S  S  A  S  Y  R  L  S  I  R  V  S  V  S  S  G  A  G  K  R  R  N  L  F  D  S  F  C  *  E  C  R  R :   *  R  P  *  R  K  R  R  G  W  I  *  R  Q  P  C  A  C  *  *  *  Y  C  S  E  S  H  *  *  R  Y  *  R  D  A  K  :  A  G  S  K  R  G  *  N  S  *  S  T  H  C  K  Q  C  N  F  *  E  E  D  I  I  F  T   : R  *  V  *  G  *  E  T  E  E  I  C  T  S  S  T  F  E  A  P  L  C  T  K  :  H  L  *  G  L  L  Q  E  T  S  *  K  N  R  :  I  H  A  S  G  C  T  I  S  T  A  L  L  G  E  C  Y  C  K  C  R  C  T  C  S  G  H  A  Q  W  Y  S  Y  W  C  Y  C  R  T  T  W  R :   Y  W  L  C  V  Q  Y  L  S  W  I  I  T  I  S  C  R  Y  H  K  D  V  *  F  K  R  *  N  L  *  K  :  N  R  A  C  I  T  D  R  P  E  F  I  S  N  W  S  F  S  V  *  G  S   : G  R  N  L  T  C  H  S  F  W  W  S  R  R  S  *  C  A  S  *  R  W  W  H  G  C  N  T  *  E  S  F  F  S  N  N  Q  A  C  *  I  Y  K  S  R  S  E  S  N  P  R  G  H  Q  V  V  E  R  K  R  F  F  Q  :  P  N  N  C  C  S  G  T  G  P  M  G  H  Y  *  R  S  A  S  S  F  I  I  F  S  S  F  C  C  L  S  P  V  C  S   : A  P  S  Y  V  Y  A  Q  P  A  D  *  E  N  G  D  W  I  T  N  F  *  T  L  A  T  *  I  S   : G  T  P  I  K  N  P  S  T  Y  A  D  E  R  V  W  W  L  Y  T  K  W  H  E  N  I  E  Q  *  L  P  Y  Q  L  *  L  G  *  I  F  L  A  S  H  S  A  W  L  Y  M  S  L  D  D  T  I  F  V  F  R  E  Y  S  L  L  E  *  M  *  G  L  S  C  L  F  S  G  A  E  T  R  L  L  M  L  Y  F  Y  S  L  I  D  V  C  L  L  L  Y  E  Q  F  F  *  I  K  R  L  K  G  L  F  P  L  T  L  *  S  I  *  R  L  S  G  K  L  *  N  Y  I  V  V  F  L  G  S  S  N  *  S  L  F  C  *  R  N  I  K  Y  V  I  Q  H  *  Q  L  F  F  N  S  K  </second_frame>
            <third_frame>   S  F  R  V  L  G  F  K  L  T  E  N  *  S  L  *  C  N  F  L  L  Y  C  F  I  *  C  L  K  I  E  F  L  A  A  K  M  S  I  E  E  A  V  D  E  D  S  K  Q  N  H  N  S  R  L  T  Y  E  G  C  N  V  L  L  D  I  N  D  G  D  R  L  V  F  S  R  L  T  A  A  S :   T  L  K  I  G  N  K  K  C  S  L  Q  P  L  I  G  C  P  F  G  S  L  F  Q  V  E  P  G  K  E  G  T  F  L  T  R  F  V  E  N  A  E   : G  N  G  L  E  E  K  D  V  D  G  S  K  D  N  R  A  L  V  D  N  N  T  A  Q  S  L  T  S  E  D  I  D  E  M  R  K :   Q  G  A  K  G  D  E  I  V  E  A  L  I  A  N  S  A  T  F  E  K  K  T  L  F  S  Q  :  D  K  Y  R  V  K  K  Q  K  K  Y  A  P  R  V  L  L  R  R  P  F  A  R  S :   I  C  E  A  Y  F  K  K  H  P  E  K  I  G :   F  M  R  V  D  A  L  S  L  L  L  S  L  G  N  V  T  A  N  A  D  V  L  V  V  D  M  L  S  G  I  L  T  G  A  I  A  E  R  L  G   : G  T  G  Y  V  C  N  T  Y  R  G  S  S  P  Y  P  V  D  I  T  R  M  F  N  L  S  D  E  I  C  K  R :   I  V  H  A  S  L  T  D  L  N  S  F  Q  T  G  A  S  V  S  E  G  Q  :  E  E  T  L  P  V  T  H  S  G  G  L  D  E  V  S  V  P  A  E  D  G  G  M  D  V  T  P  E  R  V  S  S  P  I  I  K  P  V  K  S  I  K  A  G  Q  K  A  T  L  E  A  I  K  S  W  K  E  N  G  F  S  S :   L  I  I  A  A  P  E  L  D  P  W  G  I  I  K  E  V  L  P  L  L  S  F  S  A  P  F  A  V  Y  H  Q  Y  A  Q  :  P  L  A  T  C  M  H  N  L  Q  I  E  K  M  A  I  G  L  Q  I  S  E  P  W  L  R  E  Y  Q  :  V  L  P  S  R  T  H  P  H  M  Q  M  S  A  F  G  G  Y  I  L  S  G  T  K  I  S  S  S  D  S  L  T  S  S  N  *  D  K  F  F  W  H  L  T  L  L  G  C  T  C  R  L  T  I  P  F  S  S  F  E  N  I  P  C  *  N  R  C  R  D  Y  L  V  S  F  L  G  Q  K  Q  G  Y  S  C  C  T  F  I  H  *  L  M  Y  A  C  F  C  M  S  N  S  S  K  S  K  D  *  R  V  F  F  L  L  L  Y  K  V  F  E  D  *  V  V  N  C  R  I  I  L  L  S  F  L  D  Q  A  I  E  V  C  F  V  E  E  I  *  N  M  *  Y  N  I  N  N  Y  S  S  T  P  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33031" stop="32868"/>
                    <exon start="32713" stop="32586"/>
                    <exon start="31576" stop="31468"/>
                    <exon start="31029" stop="30948"/>
                    <exon start="30877" stop="30807"/>
                    <exon start="30129" stop="30088"/>
                    <exon start="29805" stop="29681"/>
                    <exon start="29377" stop="29284"/>
                    <exon start="29129" stop="29063"/>
                    <exon start="28950" stop="28763"/>
                    <exon start="28680" stop="28575"/>
                    <exon start="28027" stop="27941"/>
                    <exon start="27563" stop="27456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1368</number_coding_nucleotides>
                  <number_encoded_amino_acids>456</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLKIEFLAAKMSIEEAVDEDSKQNHNSRLTYEGCNVLLDINDGDRLVFSRLTAASTLKIGNKKCSLQPLIGCPFGSLFQVEPGKEGTFLTRFVENAEGNGLEEKDVDGSKDNRALVDNNTAQSLTSEDIDEMRKQGAKGDEIVEALIANSATFEKKTLFSQDKYRVKKQKKYAPRVLLRRPFARSICEAYFKKHPEKIGFMRVDALSLLLSLGNVTANADVLVVDMLSGILTGAIAERLGGTGYVCNTYRGSSPYPVDITRMFNLSDEICKRIVHASLTDLNSFQTGASVSEGQEETLPVTHSGGLDEVSVPAEDGGMDVTPERVSSPIIKPVKSIKAGQKATLEAIKSWKENGFSSLIIAAPELDPWGIIKEVLPLLSFSAPFAVYHQYAQPLATCMHNLQIEKMAIGLQISEPWLREYQVLPSRTHPHMQMSAFGGYILSGTKISSSDSLTSSN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="36559" PGL_stop="39966"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36559" e_stop="36909"/>
            <exon e_start="37381" e_stop="37632"/>
            <exon e_start="37735" e_stop="37835"/>
            <exon e_start="39088" e_stop="39966"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.975" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.996"/>
          <exon-intron don_prob="0.995" acc_prob="0.976" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="36559" e_stop="36909" e_length="351"/>
          </exon>
          <intron i_serial="1" don_prob="0.975" acc_prob="0.998">
            <gDNA_intron_boundary i_start="36910" i_stop="37380" i_length="471"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="37381" e_stop="37632" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="37633" i_stop="37734" i_length="102"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37735" e_stop="37835" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.976">
            <gDNA_intron_boundary i_start="37836" i_stop="39087" i_length="1252"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="39088" e_stop="39966" e_length="879"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36559" stop="36909"/>
              <exon start="37381" stop="37632"/>
              <exon start="37735" stop="37835"/>
              <exon start="39088" stop="39966"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37510" stop="37632"/>
              <exon start="37735" stop="37835"/>
              <exon start="39088" stop="39262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336589" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAACTTCTCTCTCTCTTTTTCTCTTATGAAAAAGAGAACTTCTTCAACAATTGCTCTGTTTTTTTCCCATTTTCTTGCTCTGTTTTTAATGGCACTGTTAACATTTTTACCAGAAACATCAGAAAAAAATCAACCTTCAAAGAGGAGGAAAAAACAACAAAAACAGAATAAGGAGAAACAAAAGCAGCCATCTTCATGGGATCAATTCAAAAACTTATTGACTTGTAAACAAATTGAAAACTCAACTGTTCATGATCCTGCTTCCAAAAACCCTCCTCCTTCTGCTGCTGCTGCTGCTCCTGCTGGAGCTTACTCTAAGTTGAGTTCTTGTAGCTCCATATGCAGTTTCAG : GGATGTGGTACATGGCAACACAAGAGTGGTACATAGAGCTGATAATTCCCCAGAAAGTAGCAGTTTAGGCCAAGAAACTCGTCTTCTAAGCAAGAATAAAACTTCACATCATGATCCTTCATCTTCAAGTTCGAGATCTCTTGCTAGATCAAACGGTAATGGTAGCTCCACATACACTACTTCATCAAGAGGAATGCAATTTCGTAAGCTATCTGGATGTTATGAGTGTCACATGATAGTAGATCCTAGCAG : GTACCCTTTACCAAGGTCAACAATTTGTGCATGTCCAGATTGTGGAGAAGTTTTTCCAAAAATTGAGAGCTTAGAACATCATCAAGCAGTTAAACATGCTG : TGTCAGAGTTGGGTCCGGAAGATTCAAGCCGTAACATAGTGGAAATAATCTTCAAATCAAGCTGGCTTAAAAAGGATAATCCGATCTGTAAGATCGAACGGATATTAAAAGTCCACAACACCAAACGCACGATCCAACGGTTCGAGGACTGTAGGGACGCGGTGAAGATACATGCAGTGGCCACAGGCAAGAAAAACCCAAGATGTGCAGCTGATGGAAATGAGCTGCTTAGATTTTACTGCACGAGCCTTACGTGCGTCCTTGGTGCACGTGGCTCGTCCAGCTTGTGTGGCTCGGTACCCGGTTGTGGAGTTTGCACTACCATACGTCACGGTTTCCAAGGAAACAAAACTAGTGGAGTCCGCACAACTGCTAGTAGTGGGCGGGCCCACGATTGTCTTGGTAGCGGTATGGCCCGACGCAGGGCCATGATCGTGTGTCGGGTCATTGCTGGTAGAGTCAAGCAGAATGTGGGCGCTTCTCCCACGAAAGAGGAGGAGAATTGCTCTGGCTCTGGTTCTGGTTCTGGTTCTGGCTTGTCTGCTACTGGCTCTACCATATACAATTCAGTAGCTGGACATGTAGGGATTTACTCAAATCTCGAGGAATTATACGTATTTAATCCAAGGGCTATACTTCCATGCTTTGTTGTGATATACGAAGCATTGGAATCTTAGGCTTAATGTTTTTTTTTTTTTAATTTGTACTTGAGCTGTTTGTACGGTTTAGTTTGTTTTTTTCTTTTTTGTTGTGTCCTTAAATTTATGTAACTAATTTCAAGTTAGTTAAAAAAAAGTTGTAACACCCGTGAGGTAATGCTGATCCAACTATGATTTTTGTAAATATTTATTTATTTTATTTATTTGTCCTTTTTACATA</gDNA_template>
            <first_frame> K  L  L  S  L  F  F  S  Y  E  K  E  N  F  F  N  N  C  S  V  F  F  P  F  S  C  S  V  F  N  G  T  V  N  I  F  T  R  N  I  R  K  K  S  T  F  K  E  E  E  K  T  T  K  T  E  *  G  E  T  K  A  A  I  F  M  G  S  I  Q  K  L  I  D  L  *  T  N  *  K  L  N  C  S  *  S  C  F  Q  K  P  S  S  F  C  C  C  C  C  S  C  W  S  L  L  *  V  E  F  L  *  L  H  M  Q  F  Q  :  G  C  G  T  W  Q  H  K  S  G  T  *  S  *  *  F  P  R  K  *  Q  F  R  P  R  N  S  S  S  K  Q  E  *  N  F  T  S  *  S  F  I  F  K  F  E  I  S  C  *  I  K  R  *  W  *  L  H  I  H  Y  F  I  K  R  N  A  I  S  *  A  I  W  M  L  *  V  S  H  D  S  R  S  *  Q  :  V  P  F  T  K  V  N  N  L  C  M  S  R  L  W  R  S  F  S  K  N  *  E  L  R  T  S  S  S  S  *  T  C  C :   V  R  V  G  S  G  R  F  K  P  *  H  S  G  N  N  L  Q  I  K  L  A  *  K  G  *  S  D  L  *  D  R  T  D  I  K  S  P  Q  H  Q  T  H  D  P  T  V  R  G  L  *  G  R  G  E  D  T  C  S  G  H  R  Q  E  K  P  K  M  C  S  *  W  K  *  A  A  *  I  L  L  H  E  P  Y  V  R  P  W  C  T  W  L  V  Q  L  V  W  L  G  T  R  L  W  S  L  H  Y  H  T  S  R  F  P  R  K  Q  N  *  W  S  P  H  N  C  *  *  W  A  G  P  R  L  S  W  *  R  Y  G  P  T  Q  G  H  D  R  V  S  G  H  C  W  *  S  Q  A  E  C  G  R  F  S  H  E  R  G  G  E  L  L  W  L  W  F  W  F  W  F  W  L  V  C  Y  W  L  Y  H  I  Q  F  S  S  W  T  C  R  D  L  L  K  S  R  G  I  I  R  I  *  S  K  G  Y  T  S  M  L  C  C  D  I  R  S  I  G  I  L  G  L  M  F  F  F  F  *  F  V  L  E  L  F  V  R  F  S  L  F  F  S  F  L  L  C  P  *  I  Y  V  T  N  F  K  L  V  K  K  K  L  *  H  P  *  G  N  A  D  P  T  M  I  F  V  N  I  Y  L  F  Y  L  F  V  L  F  T   </first_frame>
            <second_frame>  N  F  S  L  S  F  S  L  M  K  K  R  T  S  S  T  I  A  L  F  F  S  H  F  L  A  L  F  L  M  A  L  L  T  F  L  P  E  T  S  E  K  N  Q  P  S  K  R  R  K  K  Q  Q  K  Q  N  K  E  K  Q  K  Q  P  S  S  W  D  Q  F  K  N  L  L  T  C  K  Q  I  E  N  S  T  V  H  D  P  A  S  K  N  P  P  P  S  A  A  A  A  A  P  A  G  A  Y  S  K  L  S  S  C  S  S  I  C  S  F  R :   D  V  V  H  G  N  T  R  V  V  H  R  A  D  N  S  P  E  S  S  S  L  G  Q  E  T  R  L  L  S  K  N  K  T  S  H  H  D  P  S  S  S  S  S  R  S  L  A  R  S  N  G  N  G  S  S  T  Y  T  T  S  S  R  G  M  Q  F  R  K  L  S  G  C  Y  E  C  H  M  I  V  D  P  S  R :   Y  P  L  P  R  S  T  I  C  A  C  P  D  C  G  E  V  F  P  K  I  E  S  L  E  H  H  Q  A  V  K  H  A   : V  S  E  L  G  P  E  D  S  S  R  N  I  V  E  I  I  F  K  S  S  W  L  K  K  D  N  P  I  C  K  I  E  R  I  L  K  V  H  N  T  K  R  T  I  Q  R  F  E  D  C  R  D  A  V  K  I  H  A  V  A  T  G  K  K  N  P  R  C  A  A  D  G  N  E  L  L  R  F  Y  C  T  S  L  T  C  V  L  G  A  R  G  S  S  S  L  C  G  S  V  P  G  C  G  V  C  T  T  I  R  H  G  F  Q  G  N  K  T  S  G  V  R  T  T  A  S  S  G  R  A  H  D  C  L  G  S  G  M  A  R  R  R  A  M  I  V  C  R  V  I  A  G  R  V  K  Q  N  V  G  A  S  P  T  K  E  E  E  N  C  S  G  S  G  S  G  S  G  S  G  L  S  A  T  G  S  T  I  Y  N  S  V  A  G  H  V  G  I  Y  S  N  L  E  E  L  Y  V  F  N  P  R  A  I  L  P  C  F  V  V  I  Y  E  A  L  E  S  *  A  *  C  F  F  F  F  N  L  Y  L  S  C  L  Y  G  L  V  C  F  F  L  F  C  C  V  L  K  F  M  *  L  I  S  S  *  L  K  K  S  C  N  T  R  E  V  M  L  I  Q  L  *  F  L  *  I  F  I  Y  F  I  Y  L  S  F  L  H  </second_frame>
            <third_frame>   T  S  L  S  L  F  L  L  *  K  R  E  L  L  Q  Q  L  L  C  F  F  P  I  F  L  L  C  F  *  W  H  C  *  H  F  Y  Q  K  H  Q  K  K  I  N  L  Q  R  G  G  K  N  N  K  N  R  I  R  R  N  K  S  S  H  L  H  G  I  N  S  K  T  Y  *  L  V  N  K  L  K  T  Q  L  F  M  I  L  L  P  K  T  L  L  L  L  L  L  L  L  L  L  L  E  L  T  L  S  *  V  L  V  A  P  Y  A  V  S   : G  M  W  Y  M  A  T  Q  E  W  Y  I  E  L  I  I  P  Q  K  V  A  V  *  A  K  K  L  V  F  *  A  R  I  K  L  H  I  M  I  L  H  L  Q  V  R  D  L  L  L  D  Q  T  V  M  V  A  P  H  T  L  L  H  Q  E  E  C  N  F  V  S  Y  L  D  V  M  S  V  T  *  *  *  I  L  A   : G  T  L  Y  Q  G  Q  Q  F  V  H  V  Q  I  V  E  K  F  F  Q  K  L  R  A  *  N  I  I  K  Q  L  N  M  L  :  C  Q  S  W  V  R  K  I  Q  A  V  T  *  W  K  *  S  S  N  Q  A  G  L  K  R  I  I  R  S  V  R  S  N  G  Y  *  K  S  T  T  P  N  A  R  S  N  G  S  R  T  V  G  T  R  *  R  Y  M  Q  W  P  Q  A  R  K  T  Q  D  V  Q  L  M  E  M  S  C  L  D  F  T  A  R  A  L  R  A  S  L  V  H  V  A  R  P  A  C  V  A  R  Y  P  V  V  E  F  A  L  P  Y  V  T  V  S  K  E  T  K  L  V  E  S  A  Q  L  L  V  V  G  G  P  T  I  V  L  V  A  V  W  P  D  A  G  P  *  S  C  V  G  S  L  L  V  E  S  S  R  M  W  A  L  L  P  R  K  R  R  R  I  A  L  A  L  V  L  V  L  V  L  A  C  L  L  L  A  L  P  Y  T  I  Q  *  L  D  M  *  G  F  T  Q  I  S  R  N  Y  T  Y  L  I  Q  G  L  Y  F  H  A  L  L  *  Y  T  K  H  W  N  L  R  L  N  V  F  F  F  L  I  C  T  *  A  V  C  T  V  *  F  V  F  F  F  F  V  V  S  L  N  L  C  N  *  F  Q  V  S  *  K  K  V  V  T  P  V  R  *  C  *  S  N  Y  D  F  C  K  Y  L  F  I  L  F  I  C  P  F  Y  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36560" stop="36909"/>
                    <exon start="37381" stop="37632"/>
                    <exon start="37735" stop="37835"/>
                    <exon start="39088" stop="39764"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFSLSFSLMKKRTSSTIALFFSHFLALFLMALLTFLPETSEKNQPSKRRKKQQKQNKEKQKQPSSWDQFKNLLTCKQIENSTVHDPASKNPPPSAAAAAPAGAYSKLSSCSSICSFRDVVHGNTRVVHRADNSPESSSLGQETRLLSKNKTSHHDPSSSSSRSLARSNGNGSSTYTTSSRGMQFRKLSGCYECHMIVDPSRYPLPRSTICACPDCGEVFPKIESLEHHQAVKHAVSELGPEDSSRNIVEIIFKSSWLKKDNPICKIERILKVHNTKRTIQRFEDCRDAVKIHAVATGKKNPRCAADGNELLRFYCTSLTCVLGARGSSSLCGSVPGCGVCTTIRHGFQGNKTSGVRTTASSGRAHDCLGSGMARRRAMIVCRVIAGRVKQNVGASPTKEEENCSGSGSGSGSGLSATGSTIYNSVAGHVGIYSNLEELYVFNPRAILPCFVVIYEALES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="49618" PGL_stop="53702"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49618" e_stop="50197"/>
            <exon e_start="50808" e_stop="50958"/>
            <exon e_start="51044" e_stop="51226"/>
            <exon e_start="51790" e_stop="51864"/>
            <exon e_start="51963" e_stop="52118"/>
            <exon e_start="52205" e_stop="52300"/>
            <exon e_start="52403" e_stop="52536"/>
            <exon e_start="52632" e_stop="52713"/>
            <exon e_start="53118" e_stop="53702"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.984" e_score="0.964"/>
          <exon-intron don_prob="0.939" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.818" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.929" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.828" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.877" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.982" e_score="0.993"/>
          <exon-intron don_prob="0.997" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.964">
            <gDNA_exon_boundary e_start="49618" e_stop="50197" e_length="580"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.984">
            <gDNA_intron_boundary i_start="50198" i_stop="50807" i_length="610"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50808" e_stop="50958" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.939" acc_prob="0.997">
            <gDNA_intron_boundary i_start="50959" i_stop="51043" i_length="85"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51044" e_stop="51226" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.818" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51227" i_stop="51789" i_length="563"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="51790" e_stop="51864" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.929">
            <gDNA_intron_boundary i_start="51865" i_stop="51962" i_length="98"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="51963" e_stop="52118" e_length="156"/>
          </exon>
          <intron i_serial="5" don_prob="0.966" acc_prob="0.828">
            <gDNA_intron_boundary i_start="52119" i_stop="52204" i_length="86"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="52205" e_stop="52300" e_length="96"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.877">
            <gDNA_intron_boundary i_start="52301" i_stop="52402" i_length="102"/>
          </intron>
          <exon e_serial="7" e_score="0.993">
            <gDNA_exon_boundary e_start="52403" e_stop="52536" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.988" acc_prob="0.982">
            <gDNA_intron_boundary i_start="52537" i_stop="52631" i_length="95"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="52632" e_stop="52713" e_length="82"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.980">
            <gDNA_intron_boundary i_start="52714" i_stop="53117" i_length="404"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="53118" e_stop="53702" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49618" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49834" stop="50197"/>
              <exon start="50808" stop="50958"/>
              <exon start="51044" stop="51226"/>
              <exon start="51790" stop="51864"/>
              <exon start="51963" stop="52118"/>
              <exon start="52205" stop="52300"/>
              <exon start="52403" stop="52536"/>
              <exon start="52632" stop="52713"/>
              <exon start="53118" stop="53702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328823" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAAAGCTGTAATGCTCTCTGCTACGGTTTAGTTTCAGCACTATGAAAGTAACGAACAGTTTTATAGTTAGCCAAATTCTTATATTCTTTCATTAAATCCTCACATCATTATTTTATTGAAATTCAACTGTTTTTCATCATTATTTTATTTGAAATTCAACTGTTCAAACAAACTTTTTTTTTTTTTCAAGTGTTAAAAGTTGAGATCTTCAAACACTCTGTTTCAACGTCACCATTTATTGTCTCTCTTTTTTTCTCCGTCACACAATTGAATTGATCTCACTGTTACCTAAAATGTCGGTCACCGTTAGCTCGCCGGCCGTCCGATCCTTCCATGTTTCACGATCACCTCATAAAACGATCTCTAGGCCACGTGTCATTATATCTGCCGTCCGATCTACTGACAGCTTAGGAGTAGCACCAATTTTGACGAAGTTGCAGAAAGATTGTGCTACTCCTCTTCCAGTTTTGCGCCACGTGGCGGATGCAATGGCCGATGATATGAGGGCCGGGCTTGCCGTCGACGGCGGCAGTGATCTGAAGATGATCCTTAGTTATGTCGACACTCTACCAACTGG : GAATGAGAAAGGCTTGTTTTATGCGTTGGACCTTGGTGGTACAAATTTCCGGGTGCTAAGGGTGCAGCTAGGTGGTAAAGAAGAGCGTGTAGTCGCCACTGAGTTTGAGCAAGTCTCTATACCCCAAGAACTGATGTTTGCTACCTCCGAG : GAGCTTTTCGATTTCATAGCTTCTGCGCTAGGAAAATTTGCACAAAAGGAAGGTGGTAATTTTGAGTTGCAACAGGGACGGACAAGGGAAATAGGATTCACGTTTTCTTTTCCGGTGAAACAGACTTCAATAAGAACTGGAATCCTAATCAAATGGACAAAAGGTTTTGCTGTCTCTGGAACT : GCGGGAAAAGATGTTGTTGCTTGTCTGAATGAAGCCATGGAGAGGCGGGGAATGGATATGCAAGTGTCTGCCCTG : GTCAATGACACTGTGGGAACACTTGCCGGAGCAAGATACTGGGATGATGATGCCATGGTTGCTGTCATTCTTGGGACTGGAACCAATGCTTGCTATGTAGAACGTGTGGATGCTATTCCTAAGCTGGCAAAAAGGATGTCTAAGTCTCCAATAACG : ATTGTGAATACCGAATGGGGAGCTTTCTCAAATGGCCTTCCTTTAACTGAGTTTGATAGAGAAATGGATGCCGAGAGCATTAACCCTGGTGAGCAG : ATTTTTGAAAAGACCATCTCTGGTATGTACCTTGGGGAAATTGTGAGACGGGTGCTGGTCAAAATGGCCAAGGTTGGGGGCTTATTTGGTAGCAGCTATGTTCCGGAAAAGCTAGTCACTCCATTTGTGCTGAG : GACACCTGATATATGTGCCATGCAGCAGGATACATCAATAGATCTTGAAGCTGTTGAGTCTGTCCTCTATGATGTAGCTGGG : GTAAAATCCGATCTAAGTGCAAGGAAAACAGTCGTGGACATTTGCGATACTATTGCAAAACGAGGGGGTCGTCTAGCTGGTGCAGGAATTGTTGGTATATTACAGAAAATGGAGGAAGATTCTAAAGGTCTCATCTTTGGTAAAAGAACAGTTGTAGCAATGGATGGAGGCTTATATGAGCACTATCCTCAGTACAGAGGATACCTCCAAGAAGCTGTCACAGAGCTACTAGGCTCGGAAATTTCGAAAAATGTAGTGATAGAACATTCAAAAGATGGATCTGGTATTGGAGCTGCATTATTAGCTGCTGCAAATTCAAAGTATGAACATGATGATTAAGGGAAAAGCTAAATTTCATGTGTTCAAAGGTTTGCTTGAGGAAAAATACATGAGCATTTGTAATTTAGAATGTTCTAAAGAAGGATTGATGATTGGATTTATAGAGGCTCTTGTTTGTGATGCCATTTTTTGTACTCCCATTAATGAAGTACGAAGAAGTGAGGATTTATATAGCCAACCCCAATTTATTTGGAATCGAGGCGTAGTTGTAATTGTATTATATGCAGCACTGACTTATTTATGTGA</gDNA_template>
            <first_frame> Q  K  S  C  N  A  L  C  Y  G  L  V  S  A  L  *  K  *  R  T  V  L  *  L  A  K  F  L  Y  S  F  I  K  S  S  H  H  Y  F  I  E  I  Q  L  F  F  I  I  I  L  F  E  I  Q  L  F  K  Q  T  F  F  F  F  Q  V  L  K  V  E  I  F  K  H  S  V  S  T  S  P  F  I  V  S  L  F  F  S  V  T  Q  L  N  *  S  H  C  Y  L  K  C  R  S  P  L  A  R  R  P  S  D  P  S  M  F  H  D  H  L  I  K  R  S  L  G  H  V  S  L  Y  L  P  S  D  L  L  T  A  *  E  *  H  Q  F  *  R  S  C  R  K  I  V  L  L  L  F  Q  F  C  A  T  W  R  M  Q  W  P  M  I  *  G  P  G  L  P  S  T  A  A  V  I  *  R  *  S  L  V  M  S  T  L  Y  Q  L   : G  M  R  K  A  C  F  M  R  W  T  L  V  V  Q  I  S  G  C  *  G  C  S  *  V  V  K  K  S  V  *  S  P  L  S  L  S  K  S  L  Y  P  K  N  *  C  L  L  P  P  R :   S  F  S  I  S  *  L  L  R  *  E  N  L  H  K  R  K  V  V  I  L  S  C  N  R  D  G  Q  G  K  *  D  S  R  F  L  F  R  *  N  R  L  Q  *  E  L  E  S  *  S  N  G  Q  K  V  L  L  S  L  E  L :   R  E  K  M  L  L  L  V  *  M  K  P  W  R  G  G  E  W  I  C  K  C  L  P  W :   S  M  T  L  W  E  H  L  P  E  Q  D  T  G  M  M  M  P  W  L  L  S  F  L  G  L  E  P  M  L  A  M  *  N  V  W  M  L  F  L  S  W  Q  K  G  C  L  S  L  Q  *  R :   L  *  I  P  N  G  E  L  S  Q  M  A  F  L  *  L  S  L  I  E  K  W  M  P  R  A  L  T  L  V  S  R :   F  L  K  R  P  S  L  V  C  T  L  G  K  L  *  D  G  C  W  S  K  W  P  R  L  G  A  Y  L  V  A  A  M  F  R  K  S  *  S  L  H  L  C  *   : G  H  L  I  Y  V  P  C  S  R  I  H  Q  *  I  L  K  L  L  S  L  S  S  M  M  *  L  G :   *  N  P  I  *  V  Q  G  K  Q  S  W  T  F  A  I  L  L  Q  N  E  G  V  V  *  L  V  Q  E  L  L  V  Y  Y  R  K  W  R  K  I  L  K  V  S  S  L  V  K  E  Q  L  *  Q  W  M  E  A  Y  M  S  T  I  L  S  T  E  D  T  S  K  K  L  S  Q  S  Y  *  A  R  K  F  R  K  M  *  *  *  N  I  Q  K  M  D  L  V  L  E  L  H  Y  *  L  L  Q  I  Q  S  M  N  M  M  I  K  G  K  A  K  F  H  V  F  K  G  L  L  E  E  K  Y  M  S  I  C  N  L  E  C  S  K  E  G  L  M  I  G  F  I  E  A  L  V  C  D  A  I  F  C  T  P  I  N  E  V  R  R  S  E  D  L  Y  S  Q  P  Q  F  I  W  N  R  G  V  V  V  I  V  L  Y  A  A  L  T  Y  L  C   </first_frame>
            <second_frame>  R  K  A  V  M  L  S  A  T  V  *  F  Q  H  Y  E  S  N  E  Q  F  Y  S  *  P  N  S  Y  I  L  S  L  N  P  H  I  I  I  L  L  K  F  N  C  F  S  S  L  F  Y  L  K  F  N  C  S  N  K  L  F  F  F  F  K  C  *  K  L  R  S  S  N  T  L  F  Q  R  H  H  L  L  S  L  F  F  S  P  S  H  N  *  I  D  L  T  V  T  *  N  V  G  H  R  *  L  A  G  R  P  I  L  P  C  F  T  I  T  S  *  N  D  L  *  A  T  C  H  Y  I  C  R  P  I  Y  *  Q  L  R  S  S  T  N  F  D  E  V  A  E  R  L  C  Y  S  S  S  S  F  A  P  R  G  G  C  N  G  R  *  Y  E  G  R  A  C  R  R  R  R  Q  *  S  E  D  D  P  *  L  C  R  H  S  T  N  W  :  E  *  E  R  L  V  L  C  V  G  P  W  W  Y  K  F  P  G  A  K  G  A  A  R  W  *  R  R  A  C  S  R  H  *  V  *  A  S  L  Y  T  P  R  T  D  V  C  Y  L  R   : G  A  F  R  F  H  S  F  C  A  R  K  I  C  T  K  G  R  W  *  F  *  V  A  T  G  T  D  K  G  N  R  I  H  V  F  F  S  G  E  T  D  F  N  K  N  W  N  P  N  Q  M  D  K  R  F  C  C  L  W  N   : C  G  K  R  C  C  C  L  S  E  *  S  H  G  E  A  G  N  G  Y  A  S  V  C  P   : G  Q  *  H  C  G  N  T  C  R  S  K  I  L  G  *  *  C  H  G  C  C  H  S  W  D  W  N  Q  C  L  L  C  R  T  C  G  C  Y  S  *  A  G  K  K  D  V  *  V  S  N  N   : D  C  E  Y  R  M  G  S  F  L  K  W  P  S  F  N  *  V  *  *  R  N  G  C  R  E  H  *  P  W  *  A   : D  F  *  K  D  H  L  W  Y  V  P  W  G  N  C  E  T  G  A  G  Q  N  G  Q  G  W  G  L  I  W  *  Q  L  C  S  G  K  A  S  H  S  I  C  A  E  :  D  T  *  Y  M  C  H  A  A  G  Y  I  N  R  S  *  S  C  *  V  C  P  L  *  C  S  W   : G  K  I  R  S  K  C  K  E  N  S  R  G  H  L  R  Y  Y  C  K  T  R  G  S  S  S  W  C  R  N  C  W  Y  I  T  E  N  G  G  R  F  *  R  S  H  L  W  *  K  N  S  C  S  N  G  W  R  L  I  *  A  L  S  S  V  Q  R  I  P  P  R  S  C  H  R  A  T  R  L  G  N  F  E  K  C  S  D  R  T  F  K  R  W  I  W  Y  W  S  C  I  I  S  C  C  K  F  K  V  *  T  *  *  L  R  E  K  L  N  F  M  C  S  K  V  C  L  R  K  N  T  *  A  F  V  I  *  N  V  L  K  K  D  *  *  L  D  L  *  R  L  L  F  V  M  P  F  F  V  L  P  L  M  K  Y  E  E  V  R  I  Y  I  A  N  P  N  L  F  G  I  E  A  *  L  *  L  Y  Y  M  Q  H  *  L  I  Y  V  </second_frame>
            <third_frame>   E  K  L  *  C  S  L  L  R  F  S  F  S  T  M  K  V  T  N  S  F  I  V  S  Q  I  L  I  F  F  H  *  I  L  T  S  L  F  Y  *  N  S  T  V  F  H  H  Y  F  I  *  N  S  T  V  Q  T  N  F  F  F  F  S  S  V  K  S  *  D  L  Q  T  L  C  F  N  V  T  I  Y  C  L  S  F  F  L  R  H  T  I  E  L  I  S  L  L  P  K  M  S  V  T  V  S  S  P  A  V  R  S  F  H  V  S  R  S  P  H  K  T  I  S  R  P  R  V  I  I  S  A  V  R  S  T  D  S  L  G  V  A  P  I  L  T  K  L  Q  K  D  C  A  T  P  L  P  V  L  R  H  V  A  D  A  M  A  D  D  M  R  A  G  L  A  V  D  G  G  S  D  L  K  M  I  L  S  Y  V  D  T  L  P  T  G :   N  E  K  G  L  F  Y  A  L  D  L  G  G  T  N  F  R  V  L  R  V  Q  L  G  G  K  E  E  R  V  V  A  T  E  F  E  Q  V  S  I  P  Q  E  L  M  F  A  T  S  E  :  E  L  F  D  F  I  A  S  A  L  G  K  F  A  Q  K  E  G  G  N  F  E  L  Q  Q  G  R  T  R  E  I  G  F  T  F  S  F  P  V  K  Q  T  S  I  R  T  G  I  L  I  K  W  T  K  G  F  A  V  S  G  T  :  A  G  K  D  V  V  A  C  L  N  E  A  M  E  R  R  G  M  D  M  Q  V  S  A  L  :  V  N  D  T  V  G  T  L  A  G  A  R  Y  W  D  D  D  A  M  V  A  V  I  L  G  T  G  T  N  A  C  Y  V  E  R  V  D  A  I  P  K  L  A  K  R  M  S  K  S  P  I  T  :  I  V  N  T  E  W  G  A  F  S  N  G  L  P  L  T  E  F  D  R  E  M  D  A  E  S  I  N  P  G  E  Q  :  I  F  E  K  T  I  S  G  M  Y  L  G  E  I  V  R  R  V  L  V  K  M  A  K  V  G  G  L  F  G  S  S  Y  V  P  E  K  L  V  T  P  F  V  L  R :   T  P  D  I  C  A  M  Q  Q  D  T  S  I  D  L  E  A  V  E  S  V  L  Y  D  V  A  G  :  V  K  S  D  L  S  A  R  K  T  V  V  D  I  C  D  T  I  A  K  R  G  G  R  L  A  G  A  G  I  V  G  I  L  Q  K  M  E  E  D  S  K  G  L  I  F  G  K  R  T  V  V  A  M  D  G  G  L  Y  E  H  Y  P  Q  Y  R  G  Y  L  Q  E  A  V  T  E  L  L  G  S  E  I  S  K  N  V  V  I  E  H  S  K  D  G  S  G  I  G  A  A  L  L  A  A  A  N  S  K  Y  E  H  D  D  *  G  K  S  *  I  S  C  V  Q  R  F  A  *  G  K  I  H  E  H  L  *  F  R  M  F  *  R  R  I  D  D  W  I  Y  R  G  S  C  L  *  C  H  F  L  Y  S  H  *  *  S  T  K  K  *  G  F  I  *  P  T  P  I  Y  L  E  S  R  R  S  C  N  C  I  I  C  S  T  D  L  F  M  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49824" stop="50197"/>
                    <exon start="50808" stop="50958"/>
                    <exon start="51044" stop="51226"/>
                    <exon start="51790" stop="51864"/>
                    <exon start="51963" stop="52118"/>
                    <exon start="52205" stop="52300"/>
                    <exon start="52403" stop="52536"/>
                    <exon start="52632" stop="52713"/>
                    <exon start="53118" stop="53456"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1587</number_coding_nucleotides>
                  <number_encoded_amino_acids>529</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DLQTLCFNVTIYCLSFFLRHTIELISLLPKMSVTVSSPAVRSFHVSRSPHKTISRPRVIISAVRSTDSLGVAPILTKLQKDCATPLPVLRHVADAMADDMRAGLAVDGGSDLKMILSYVDTLPTGNEKGLFYALDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFATSEELFDFIASALGKFAQKEGGNFELQQGRTREIGFTFSFPVKQTSIRTGILIKWTKGFAVSGTAGKDVVACLNEAMERRGMDMQVSALVNDTVGTLAGARYWDDDAMVAVILGTGTNACYVERVDAIPKLAKRMSKSPITIVNTEWGAFSNGLPLTEFDREMDAESINPGEQIFEKTISGMYLGEIVRRVLVKMAKVGGLFGSSYVPEKLVTPFVLRTPDICAMQQDTSIDLEAVESVLYDVAGVKSDLSARKTVVDICDTIAKRGGRLAGAGIVGILQKMEEDSKGLIFGKRTVVAMDGGLYEHYPQYRGYLQEAVTELLGSEISKNVVIEHSKDGSGIGAALLAAANSKYEHDD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56961" PGL_stop="60169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56961" e_stop="57081"/>
            <exon e_start="57228" e_stop="57326"/>
            <exon e_start="57409" e_stop="57459"/>
            <exon e_start="58763" e_stop="58936"/>
            <exon e_start="59239" e_stop="59298"/>
            <exon e_start="59827" e_stop="60169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.799" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.658" e_score="1.000"/>
          <exon-intron don_prob="0.951" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.713" acc_prob="0.993" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="56961" e_stop="57081" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.799">
            <gDNA_intron_boundary i_start="57082" i_stop="57227" i_length="146"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57228" e_stop="57326" e_length="99"/>
          </exon>
          <intron i_serial="2" don_prob="0.951" acc_prob="0.993">
            <gDNA_intron_boundary i_start="57327" i_stop="57408" i_length="82"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="57409" e_stop="57459" e_length="51"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.658">
            <gDNA_intron_boundary i_start="57460" i_stop="58762" i_length="1303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="58763" e_stop="58936" e_length="174"/>
          </exon>
          <intron i_serial="4" don_prob="0.951" acc_prob="0.997">
            <gDNA_intron_boundary i_start="58937" i_stop="59238" i_length="302"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="59239" e_stop="59298" e_length="60"/>
          </exon>
          <intron i_serial="5" don_prob="0.713" acc_prob="0.993">
            <gDNA_intron_boundary i_start="59299" i_stop="59826" i_length="528"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="59827" e_stop="60169" e_length="343"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56961" stop="57081"/>
              <exon start="57228" stop="57326"/>
              <exon start="57409" stop="57459"/>
              <exon start="58763" stop="58936"/>
              <exon start="59239" stop="59298"/>
              <exon start="59827" stop="60169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTGGCACCTCAGTTGTGACCCTGAGGGCTTTTTGCTGGTTTTTACAAATTAAAGAATCAAAGAGATTTTTTCAATTGTTTCTACAGCTGTTTTGCCTGCAGATCTTCTGAACAAAATG : ATCCGTTTTATATTGCTTCAGAACAGGCAAGGAAAGACTCGTTTGGCTAAGTATTATATACCTCTTGAGGAATCCGAGAAGCACAAGGTGGAATATGAG : GTTCATAGGTTGGTTGTGAATAGAGATCCCAAATTCACCAACTTTGTTGAG : TTCCGTACTCACAAGGTAATATACAGAAGATATGCAGGATTATTTTTCTCACTTTGTGTTGATATCACAGACAACGAGTTGGCTTATTTAGAGTCCATCCACTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTCTGTGAGCTGGATTTGGTTTTCAATTTCCACAAG : GTATATCTGATATTAGATGAGTTTATTCTTGCTGGGGAGCTCCAGGAAACAAGTAAGAGG : GCAATCATCGAGAGAATGGGAGAGTTGGAGAAGCAGGAGTGAAGAACTCCGATGCTTTGCTCAAGAGTCAAAACAAACACTTGCCTTTTCCTTCATCACCTGCACTTCTCTTCCGGCTGGCTGTATTTACTGCATTAGACATTCTGTATCCCGTTGATACCTTCATGTTGATGTGGCCTCATTTAATACAAGATTTGTTCATTCATACATTTAAAGGTAGTTTGCAAGTTTAAATATGAATGTCTCTATCTATTCCCAGTTTAAATATGAATATCTTTATCTTTTGTTAACTCCAGAAACTATATTGTTGTTGGAAGTAGGAAAAGGGTTATTTCAATACGAA</gDNA_template>
            <first_frame> S  L  A  P  Q  L  *  P  *  G  L  F  A  G  F  Y  K  L  K  N  Q  R  D  F  F  N  C  F  Y  S  C  F  A  C  R  S  S  E  Q  N   : D  P  F  Y  I  A  S  E  Q  A  R  K  D  S  F  G  *  V  L  Y  T  S  *  G  I  R  E  A  Q  G  G  I  *   : G  S  *  V  G  C  E  *  R  S  Q  I  H  Q  L  C  *   : V  P  Y  S  Q  G  N  I  Q  K  I  C  R  I  I  F  L  T  L  C  *  Y  H  R  Q  R  V  G  L  F  R  V  H  P  L  V  C  G  D  F  G  S  L  L  Q  Q  C  L  *  A  G  F  G  F  Q  F  P  Q   : G  I  S  D  I  R  *  V  Y  S  C  W  G  A  P  G  N  K  *  E   : G  N  H  R  E  N  G  R  V  G  E  A  G  V  K  N  S  D  A  L  L  K  S  Q  N  K  H  L  P  F  P  S  S  P  A  L  L  F  R  L  A  V  F  T  A  L  D  I  L  Y  P  V  D  T  F  M  L  M  W  P  H  L  I  Q  D  L  F  I  H  T  F  K  G  S  L  Q  V  *  I  *  M  S  L  S  I  P  S  L  N  M  N  I  F  I  F  C  *  L  Q  K  L  Y  C  C  W  K  *  E  K  G  Y  F  N  T   </first_frame>
            <second_frame>  L  W  H  L  S  C  D  P  E  G  F  L  L  V  F  T  N  *  R  I  K  E  I  F  S  I  V  S  T  A  V  L  P  A  D  L  L  N  K  M  :  I  R  F  I  L  L  Q  N  R  Q  G  K  T  R  L  A  K  Y  Y  I  P  L  E  E  S  E  K  H  K  V  E  Y  E  :  V  H  R  L  V  V  N  R  D  P  K  F  T  N  F  V  E  :  F  R  T  H  K  V  I  Y  R  R  Y  A  G  L  F  F  S  L  C  V  D  I  T  D  N  E  L  A  Y  L  E  S  I  H  L  F  V  E  I  L  D  H  F  F  S  N  V  C  E  L  D  L  V  F  N  F  H  K  :  V  Y  L  I  L  D  E  F  I  L  A  G  E  L  Q  E  T  S  K  R  :  A  I  I  E  R  M  G  E  L  E  K  Q  E  *  R  T  P  M  L  C  S  R  V  K  T  N  T  C  L  F  L  H  H  L  H  F  S  S  G  W  L  Y  L  L  H  *  T  F  C  I  P  L  I  P  S  C  *  C  G  L  I  *  Y  K  I  C  S  F  I  H  L  K  V  V  C  K  F  K  Y  E  C  L  Y  L  F  P  V  *  I  *  I  S  L  S  F  V  N  S  R  N  Y  I  V  V  G  S  R  K  R  V  I  S  I  R  </second_frame>
            <third_frame>   S  G  T  S  V  V  T  L  R  A  F  C  W  F  L  Q  I  K  E  S  K  R  F  F  Q  L  F  L  Q  L  F  C  L  Q  I  F  *  T  K  * :   S  V  L  Y  C  F  R  T  G  K  E  R  L  V  W  L  S  I  I  Y  L  L  R  N  P  R  S  T  R  W  N  M  R :   F  I  G  W  L  *  I  E  I  P  N  S  P  T  L  L  S :   S  V  L  T  R  *  Y  T  E  D  M  Q  D  Y  F  S  H  F  V  L  I  S  Q  T  T  S  W  L  I  *  S  P  S  T  C  L  W  R  F  W  I  T  S  S  A  M  S  V  S  W  I  W  F  S  I  S  T  R :   Y  I  *  Y  *  M  S  L  F  L  L  G  S  S  R  K  Q  V  R  G :   Q  S  S  R  E  W  E  S  W  R  S  R  S  E  E  L  R  C  F  A  Q  E  S  K  Q  T  L  A  F  S  F  I  T  C  T  S  L  P  A  G  C  I  Y  C  I  R  H  S  V  S  R  *  Y  L  H  V  D  V  A  S  F  N  T  R  F  V  H  S  Y  I  *  R  *  F  A  S  L  N  M  N  V  S  I  Y  S  Q  F  K  Y  E  Y  L  Y  L  L  L  T  P  E  T  I  L  L  L  E  V  G  K  G  L  F  Q  Y  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57016" stop="57081"/>
                    <exon start="57228" stop="57326"/>
                    <exon start="57409" stop="57459"/>
                    <exon start="58763" stop="58936"/>
                    <exon start="59239" stop="59298"/>
                    <exon start="59827" stop="59868"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>489</number_coding_nucleotides>
                  <number_encoded_amino_acids>163</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIKEIFSIVSTAVLPADLLNKMIRFILLQNRQGKTRLAKYYIPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKQE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="57581" e_stop="58487"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="57581" e_stop="58487" e_length="907"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57581" stop="58487"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326623" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGTGATTATCTGTCTTGTTTTCGATCTATAGAACACCATACTAAGCGAATTTGCTACAATTGTGCTAAGGCAAAGGGTTCTCTTTCGCTAGCCTTTAATTTTCTAAAAGTAGTAATGTTTAACTATCTTATACTGTGAGAGGATGATGTCCTCTTGGTGGAGAACTATTTTGCTTTCCCTCTACGCTACGCCTGCACATTATCATGACATTTCACATTATTGGTGAAGTAATATCAAGATGGTTTATCGTATTTATCTACCATTGCATCATAAATACTTGTTCCGTTGGTATCAAAGGAATAACTTTGTGAAATGATTGAAGGATAGGGAGTGGTGGGGGATTCAAGATATTGTTCAAAATTTAATTTCTGTGTAGAGTAACCTATGTTATGGCTTAGTATGAAATTCTTATTGAGACATTTCTCCGTACCTACATGTTGTTTCCTAATTCAGTATCTTGGCTTTAGAAAATTTAGAGGTTGGAAGAGAGTGGGAGAGTGGAGGGAGGGAAGGATCAAGAAAGAAGAGCCATTTCCCTTTTGCTTGTGCATGATTAGAGGATTTATTTAGAATCATATACAGACTACTTTTTATGCATCATTCTAGCTTCAATATTGGTGTAATATTCCTGGATCTGATTTCTTAAAGAATCAAAAAATGTTAACCTGCAAAAGGAAACAAAAGAAGCATTGTGTTTTAACTTTGTTGGGTAATCCTTTCTCATGAGATGCTTCGTGAAGTATAACATACTATTTAAAAGTCCTCGATGACATAAAGTACAAAGCAAGATATCGGACAGAAGCTCTTTTTTCCTAAGTAAGTGATTTATCCTTGGAGCTGTAAGGGGGAAGGTAAAGCAAAGGAAGAGAGAGAAAACAAGTTTGAGGTTTGAACTTGTGTATA</gDNA_template>
            <first_frame> K  M  *  L  S  V  L  F  S  I  Y  R  T  P  Y  *  A  N  L  L  Q  L  C  *  G  K  G  F  S  F  A  S  L  *  F  S  K  S  S  N  V  *  L  S  Y  T  V  R  G  *  C  P  L  G  G  E  L  F  C  F  P  S  T  L  R  L  H  I  I  M  T  F  H  I  I  G  E  V  I  S  R  W  F  I  V  F  I  Y  H  C  I  I  N  T  C  S  V  G  I  K  G  I  T  L  *  N  D  *  R  I  G  S  G  G  G  F  K  I  L  F  K  I  *  F  L  C  R  V  T  Y  V  M  A  *  Y  E  I  L  I  E  T  F  L  R  T  Y  M  L  F  P  N  S  V  S  W  L  *  K  I  *  R  L  E  E  S  G  R  V  E  G  G  K  D  Q  E  R  R  A  I  S  L  L  L  V  H  D  *  R  I  Y  L  E  S  Y  T  D  Y  F  L  C  I  I  L  A  S  I  L  V  *  Y  S  W  I  *  F  L  K  E  S  K  N  V  N  L  Q  K  E  T  K  E  A  L  C  F  N  F  V  G  *  S  F  L  M  R  C  F  V  K  Y  N  I  L  F  K  S  P  R  *  H  K  V  Q  S  K  I  S  D  R  S  S  F  F  L  S  K  *  F  I  L  G  A  V  R  G  K  V  K  Q  R  K  R  E  K  T  S  L  R  F  E  L  V  Y  </first_frame>
            <second_frame>  K  C  D  Y  L  S  C  F  R  S  I  E  H  H  T  K  R  I  C  Y  N  C  A  K  A  K  G  S  L  S  L  A  F  N  F  L  K  V  V  M  F  N  Y  L  I  L  *  E  D  D  V  L  L  V  E  N  Y  F  A  F  P  L  R  Y  A  C  T  L  S  *  H  F  T  L  L  V  K  *  Y  Q  D  G  L  S  Y  L  S  T  I  A  S  *  I  L  V  P  L  V  S  K  E  *  L  C  E  M  I  E  G  *  G  V  V  G  D  S  R  Y  C  S  K  F  N  F  C  V  E  *  P  M  L  W  L  S  M  K  F  L  L  R  H  F  S  V  P  T  C  C  F  L  I  Q  Y  L  G  F  R  K  F  R  G  W  K  R  V  G  E  W  R  E  G  R  I  K  K  E  E  P  F  P  F  C  L  C  M  I  R  G  F  I  *  N  H  I  Q  T  T  F  Y  A  S  F  *  L  Q  Y  W  C  N  I  P  G  S  D  F  L  K  N  Q  K  M  L  T  C  K  R  K  Q  K  K  H  C  V  L  T  L  L  G  N  P  F  S  *  D  A  S  *  S  I  T  Y  Y  L  K  V  L  D  D  I  K  Y  K  A  R  Y  R  T  E  A  L  F  S  *  V  S  D  L  S  L  E  L  *  G  G  R  *  S  K  G  R  E  R  K  Q  V  *  G  L  N  L  C  I </second_frame>
            <third_frame>   N  V  I  I  C  L  V  F  D  L  *  N  T  I  L  S  E  F  A  T  I  V  L  R  Q  R  V  L  F  R  *  P  L  I  F  *  K  *  *  C  L  T  I  L  Y  C  E  R  M  M  S  S  W  W  R  T  I  L  L  S  L  Y  A  T  P  A  H  Y  H  D  I  S  H  Y  W  *  S  N  I  K  M  V  Y  R  I  Y  L  P  L  H  H  K  Y  L  F  R  W  Y  Q  R  N  N  F  V  K  *  L  K  D  R  E  W  W  G  I  Q  D  I  V  Q  N  L  I  S  V  *  S  N  L  C  Y  G  L  V  *  N  S  Y  *  D  I  S  P  Y  L  H  V  V  S  *  F  S  I  L  A  L  E  N  L  E  V  G  R  E  W  E  S  G  G  R  E  G  S  R  K  K  S  H  F  P  F  A  C  A  *  L  E  D  L  F  R  I  I  Y  R  L  L  F  M  H  H  S  S  F  N  I  G  V  I  F  L  D  L  I  S  *  R  I  K  K  C  *  P  A  K  G  N  K  R  S  I  V  F  *  L  C  W  V  I  L  S  H  E  M  L  R  E  V  *  H  T  I  *  K  S  S  M  T  *  S  T  K  Q  D  I  G  Q  K  L  F  F  P  K  *  V  I  Y  P  W  S  C  K  G  E  G  K  A  K  E  E  R  E  N  K  F  E  V  *  T  C  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178J08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="61260" PGL_stop="60577"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61260" e_stop="60577"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="61260" e_stop="60577" e_length="684"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61260" stop="60577"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGTACAAGTTTGGTGGAGTCTCTACCTCACAAATGCGAGACTGGCAAAATGCAGGGCGACCAATGCCTATCTTTGGACCTTCTCAAGCTCAATTGGCAGCTTCTTCTTCCTCGATGGAAGCACTTTCTTCCAAGTATGTTCCACCCTTGTTGAACGAGCAGGAGCTTATGTCCATTTCTACGTCACGAACTAATTCAAGGATCAAAGGACAATATTACAGTTTCCCTTCTGGCTTGGAAGGAAGTGGACATGGACTCTACCCCAATAATGTGCCTTCATTGCAGCTTCTTTGCAATGATCGTCGTTAATACGGAGAGCCATGGCACCATGTCCATAATATCAGAGCGAAACTCCTGCAAATCATAATTGATTTATTCTTTTCTTTGCTTATGCATGAGAGTTGGTGTTCATTCTGTTACTGAATATAAGGAACACAAAAAAGGGAGGATATAGTAAATCTCATGTCCCTTATTAGATGCTTATTCTGTTTCAGTTTCAATTAATTATAGAGTAACAACTTCAGAAATGGTTGTTGGTTTTTCCCTAGATGGAAAGAAACTTTATGTGTCTGAGAAGGTTATTGACTTGTAGTATACACAAGAAGAAGAATGGCAATGAAAAAAATTGCAGCTGCTTTAAATTTCTTTCAGCAATTTTCAGGAAAATAAAGTGTTCTTTTATAC</gDNA_template>
            <first_frame> Q  Y  K  F  G  G  V  S  T  S  Q  M  R  D  W  Q  N  A  G  R  P  M  P  I  F  G  P  S  Q  A  Q  L  A  A  S  S  S  S  M  E  A  L  S  S  K  Y  V  P  P  L  L  N  E  Q  E  L  M  S  I  S  T  S  R  T  N  S  R  I  K  G  Q  Y  Y  S  F  P  S  G  L  E  G  S  G  H  G  L  Y  P  N  N  V  P  S  L  Q  L  L  C  N  D  R  R  *  Y  G  E  P  W  H  H  V  H  N  I  R  A  K  L  L  Q  I  I  I  D  L  F  F  S  L  L  M  H  E  S  W  C  S  F  C  Y  *  I  *  G  T  Q  K  R  E  D  I  V  N  L  M  S  L  I  R  C  L  F  C  F  S  F  N  *  L  *  S  N  N  F  R  N  G  C  W  F  F  P  R  W  K  E  T  L  C  V  *  E  G  Y  *  L  V  V  Y  T  R  R  R  M  A  M  K  K  I  A  A  A  L  N  F  F  Q  Q  F  S  G  K  *  S  V  L  L  Y </first_frame>
            <second_frame>  S  T  S  L  V  E  S  L  P  H  K  C  E  T  G  K  M  Q  G  D  Q  C  L  S  L  D  L  L  K  L  N  W  Q  L  L  L  P  R  W  K  H  F  L  P  S  M  F  H  P  C  *  T  S  R  S  L  C  P  F  L  R  H  E  L  I  Q  G  S  K  D  N  I  T  V  S  L  L  A  W  K  E  V  D  M  D  S  T  P  I  M  C  L  H  C  S  F  F  A  M  I  V  V  N  T  E  S  H  G  T  M  S  I  I  S  E  R  N  S  C  K  S  *  L  I  Y  S  F  L  C  L  C  M  R  V  G  V  H  S  V  T  E  Y  K  E  H  K  K  G  R  I  *  *  I  S  C  P  L  L  D  A  Y  S  V  S  V  S  I  N  Y  R  V  T  T  S  E  M  V  V  G  F  S  L  D  G  K  K  L  Y  V  S  E  K  V  I  D  L  *  Y  T  Q  E  E  E  W  Q  *  K  K  L  Q  L  L  *  I  S  F  S  N  F  Q  E  N  K  V  F  F  Y   </second_frame>
            <third_frame>   V  Q  V  W  W  S  L  Y  L  T  N  A  R  L  A  K  C  R  A  T  N  A  Y  L  W  T  F  S  S  S  I  G  S  F  F  F  L  D  G  S  T  F  F  Q  V  C  S  T  L  V  E  R  A  G  A  Y  V  H  F  Y  V  T  N  *  F  K  D  Q  R  T  I  L  Q  F  P  F  W  L  G  R  K  W  T  W  T  L  P  Q  *  C  A  F  I  A  A  S  L  Q  *  S  S  L  I  R  R  A  M  A  P  C  P  *  Y  Q  S  E  T  P  A  N  H  N  *  F  I  L  F  F  A  Y  A  *  E  L  V  F  I  L  L  L  N  I  R  N  T  K  K  G  G  Y  S  K  S  H  V  P  Y  *  M  L  I  L  F  Q  F  Q  L  I  I  E  *  Q  L  Q  K  W  L  L  V  F  P  *  M  E  R  N  F  M  C  L  R  R  L  L  T  C  S  I  H  K  K  K  N  G  N  E  K  N  C  S  C  F  K  F  L  S  A  I  F  R  K  I  K  C  S  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61260" stop="60952"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYKFGGVSTSQMRDWQNAGRPMPIFGPSQAQLAASSSSMEALSSKYVPPLLNEQELMSISTSRTNSRIKGQYYSFPSGLEGSGHGLYPNNVPSLQLLCNDRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="65707" PGL_stop="62101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65707" e_stop="65583"/>
            <exon e_start="64554" e_stop="64373"/>
            <exon e_start="64292" e_stop="64235"/>
            <exon e_start="63856" e_stop="63735"/>
            <exon e_start="63601" e_stop="63394"/>
            <exon e_start="63308" e_stop="63130"/>
            <exon e_start="63054" e_stop="63000"/>
            <exon e_start="62876" e_stop="62807"/>
            <exon e_start="62730" e_stop="62640"/>
            <exon e_start="62543" e_stop="62193"/>
            <exon e_start="62124" e_stop="62101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.699" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.771" e_score="1.000"/>
          <exon-intron don_prob="0.886" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.866" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.987" e_score="0.997"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65707" e_stop="65583" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.994">
            <gDNA_intron_boundary i_start="65582" i_stop="64555" i_length="1028"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64554" e_stop="64373" e_length="182"/>
          </exon>
          <intron i_serial="2" don_prob="0.969" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64372" i_stop="64293" i_length="80"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="64292" e_stop="64235" e_length="58"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.699">
            <gDNA_intron_boundary i_start="64234" i_stop="63857" i_length="378"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63856" e_stop="63735" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.943" acc_prob="0.771">
            <gDNA_intron_boundary i_start="63734" i_stop="63602" i_length="133"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="63601" e_stop="63394" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="0.886" acc_prob="0.963">
            <gDNA_intron_boundary i_start="63393" i_stop="63309" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63308" e_stop="63130" e_length="179"/>
          </exon>
          <intron i_serial="6" don_prob="0.866" acc_prob="0.999">
            <gDNA_intron_boundary i_start="63129" i_stop="63055" i_length="75"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63054" e_stop="63000" e_length="55"/>
          </exon>
          <intron i_serial="7" don_prob="0.990" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62999" i_stop="62877" i_length="123"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="62876" e_stop="62807" e_length="70"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62806" i_stop="62731" i_length="76"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="62730" e_stop="62640" e_length="91"/>
          </exon>
          <intron i_serial="9" don_prob="0.950" acc_prob="0.998">
            <gDNA_intron_boundary i_start="62639" i_stop="62544" i_length="96"/>
          </intron>
          <exon e_serial="10" e_score="0.997">
            <gDNA_exon_boundary e_start="62543" e_stop="62193" e_length="351"/>
          </exon>
          <intron i_serial="10" don_prob="1.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="62192" i_stop="62125" i_length="68"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="62124" e_stop="62101" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65707" stop="65583"/>
              <exon start="64554" stop="64373"/>
              <exon start="64292" stop="64235"/>
              <exon start="63856" stop="63735"/>
              <exon start="63601" stop="63394"/>
              <exon start="63308" stop="63130"/>
              <exon start="63054" stop="63000"/>
              <exon start="62876" stop="62807"/>
              <exon start="62730" stop="62640"/>
              <exon start="62543" stop="62193"/>
              <exon start="62124" stop="62101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321445" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACAGAGTAACTGATCGTTTTCGTGTGAAATCTTGAGAGAATCGGGTAATCAAAAACCGAAAGCTTCGGTTTTTCCGTTTGTTAAGCAGAAATATTCTCAGATAGCTAAATCGTTACTATTTGG : ATTGTAAGGGAGGAAATGAAATAATTGCGAAGAAATCGAAGAAAGGGGGAGAAAGATTGAGTGGTGCTGGTGAAGTTTAGTCCAGTATGAACAACATTGAAATGGGTTGTTTAAAGTCTGATGATAACGATGAGATTCATTCCAATGTTTCTGTTCGGAAGCGATTTAAGTTTCCCAAAAAG : TTTTTTGATGAGTGTAATGGAGTAGATCATGCTTCTGTTCCTCGGAAAGTTCGTTCAG : TTATCAAGAAGAGAATTCGCAAGCTCATCTCTCCACCTTTGCCGATTTCCAAAAAGGCGAATCGCATGTCAGATGGAGCTGAAACACTAAGGAAATATGGCAACAAGTCTAAGCTTAATTTG : ACTCATTGTGGTTCAAGTCGGTGTATAAAGGAGGAGCTTGATTGTCCAATCACCAAAGATGAAGAGGAAGTGGCTGAAACCTTGTATGCTTTGGCTGGTATGATCCCAGATGTTGACACCTTGAGCGAAAGCAAAATAAATAGTCAACTTCCTGAAGTGAAATCTTTGGACTTACCAGAACCTGAGGCTTCTGTAATCGCAAGTGGAG : TTGTAACAACAGAACAGGACATAAGGACAAACAGCTCCCAATTCAGTGCTGAAGCTTTGAAGCAGTTTCCAGACATAGCTGTTTCTGCTGGAGAAGCTGCCAAATCAAAATCATTTCATGATGCTTCCCCGTGTGATACATTCATCAACACAGAGCAGCTAGAAATTTCATCGCAACAA : GTTGTTGCTTATCAAGCCAACAAACAAAACACACACAAGGAGAATAGGAATAATG : GTTCATTGTTGTGGCCAGGCTTGTCTGCAGCAGGGTCATCTTGTTCCGACATACTTGATTCTTCACCACA : GTTTCCAATTGGCAAATTTCCTGTCTGGATCGGGAGCGCTGGCACTGATCATCAAGCTCAAAATGCAAAATCTTGTCTACCAACCATGAAG : GATTCTCAAGTTCCACTTGAGTTGAGGAAGTCATTTAAGAGGTGTGCTGCTCATGTTTATATAAGTCGGCTGACTAAGGGCTTACAGACTTCGATGAGAGGTGACACAGTCTCCTCGCATCCTTCTCAGTCCTCACCTCCTGATGGAGTGAAGCAAGAGCCTCCTATAATTCAGAACAGCCCAACTGTAAAGGTGAATGATATGCATGGAATTGTTTCTACTGGGAATGTTGCCTCTACTGTTGAGAAGAATCCAACTGAAGTTAGAAATGCAATCCTTTTGCACCAAAGACTCCTCCAAGATCAGCAACAGGCTTCTACTACATCTGGGTTCAATTCTTTAGCAAAGCAG : AATGCAGATTTCCTTTCATTGTCA</gDNA_template>
            <first_frame> K  Q  S  N  *  S  F  S  C  E  I  L  R  E  S  G  N  Q  K  P  K  A  S  V  F  P  F  V  K  Q  K  Y  S  Q  I  A  K  S  L  L  F  G :   L  *  G  R  K  *  N  N  C  E  E  I  E  E  R  G  R  K  I  E  W  C  W  *  S  L  V  Q  Y  E  Q  H  *  N  G  L  F  K  V  *  *  *  R  *  D  S  F  Q  C  F  C  S  E  A  I  *  V  S  Q  K   : V  F  *  *  V  *  W  S  R  S  C  F  C  S  S  E  S  S  F  S :   Y  Q  E  E  N  S  Q  A  H  L  S  T  F  A  D  F  Q  K  G  E  S  H  V  R  W  S  *  N  T  K  E  I  W  Q  Q  V  *  A  *  F   : D  S  L  W  F  K  S  V  Y  K  G  G  A  *  L  S  N  H  Q  R  *  R  G  S  G  *  N  L  V  C  F  G  W  Y  D  P  R  C  *  H  L  E  R  K  Q  N  K  *  S  T  S  *  S  E  I  F  G  L  T  R  T  *  G  F  C  N  R  K  W  S :   C  N  N  R  T  G  H  K  D  K  Q  L  P  I  Q  C  *  S  F  E  A  V  S  R  H  S  C  F  C  W  R  S  C  Q  I  K  I  I  S  *  C  F  P  V  *  Y  I  H  Q  H  R  A  A  R  N  F  I  A  T   : S  C  C  L  S  S  Q  Q  T  K  H  T  Q  G  E  *  E  *  W :   F  I  V  V  A  R  L  V  C  S  R  V  I  L  F  R  H  T  *  F  F  T  T  :  V  S  N  W  Q  I  S  C  L  D  R  E  R  W  H  *  S  S  S  S  K  C  K  I  L  S  T  N  H  E   : G  F  S  S  S  T  *  V  E  E  V  I  *  E  V  C  C  S  C  L  Y  K  S  A  D  *  G  L  T  D  F  D  E  R  *  H  S  L  L  A  S  F  S  V  L  T  S  *  W  S  E  A  R  A  S  Y  N  S  E  Q  P  N  C  K  G  E  *  Y  A  W  N  C  F  Y  W  E  C  C  L  Y  C  *  E  E  S  N  *  S  *  K  C  N  P  F  A  P  K  T  P  P  R  S  A  T  G  F  Y  Y  I  W  V  Q  F  F  S  K  A   : E  C  R  F  P  F  I  V  </first_frame>
            <second_frame>  N  R  V  T  D  R  F  R  V  K  S  *  E  N  R  V  I  K  N  R  K  L  R  F  F  R  L  L  S  R  N  I  L  R  *  L  N  R  Y  Y  L   : D  C  K  G  G  N  E  I  I  A  K  K  S  K  K  G  G  E  R  L  S  G  A  G  E  V  *  S  S  M  N  N  I  E  M  G  C  L  K  S  D  D  N  D  E  I  H  S  N  V  S  V  R  K  R  F  K  F  P  K  K  :  F  F  D  E  C  N  G  V  D  H  A  S  V  P  R  K  V  R  S   : V  I  K  K  R  I  R  K  L  I  S  P  P  L  P  I  S  K  K  A  N  R  M  S  D  G  A  E  T  L  R  K  Y  G  N  K  S  K  L  N  L  :  T  H  C  G  S  S  R  C  I  K  E  E  L  D  C  P  I  T  K  D  E  E  E  V  A  E  T  L  Y  A  L  A  G  M  I  P  D  V  D  T  L  S  E  S  K  I  N  S  Q  L  P  E  V  K  S  L  D  L  P  E  P  E  A  S  V  I  A  S  G   : V  V  T  T  E  Q  D  I  R  T  N  S  S  Q  F  S  A  E  A  L  K  Q  F  P  D  I  A  V  S  A  G  E  A  A  K  S  K  S  F  H  D  A  S  P  C  D  T  F  I  N  T  E  Q  L  E  I  S  S  Q  Q  :  V  V  A  Y  Q  A  N  K  Q  N  T  H  K  E  N  R  N  N   : G  S  L  L  W  P  G  L  S  A  A  G  S  S  C  S  D  I  L  D  S  S  P  Q :   F  P  I  G  K  F  P  V  W  I  G  S  A  G  T  D  H  Q  A  Q  N  A  K  S  C  L  P  T  M  K  :  D  S  Q  V  P  L  E  L  R  K  S  F  K  R  C  A  A  H  V  Y  I  S  R  L  T  K  G  L  Q  T  S  M  R  G  D  T  V  S  S  H  P  S  Q  S  S  P  P  D  G  V  K  Q  E  P  P  I  I  Q  N  S  P  T  V  K  V  N  D  M  H  G  I  V  S  T  G  N  V  A  S  T  V  E  K  N  P  T  E  V  R  N  A  I  L  L  H  Q  R  L  L  Q  D  Q  Q  Q  A  S  T  T  S  G  F  N  S  L  A  K  Q  :  N  A  D  F  L  S  L  S </second_frame>
            <third_frame>   T  E  *  L  I  V  F  V  *  N  L  E  R  I  G  *  S  K  T  E  S  F  G  F  S  V  C  *  A  E  I  F  S  D  S  *  I  V  T  I  W  :  I  V  R  E  E  M  K  *  L  R  R  N  R  R  K  G  E  K  D  *  V  V  L  V  K  F  S  P  V  *  T  T  L  K  W  V  V  *  S  L  M  I  T  M  R  F  I  P  M  F  L  F  G  S  D  L  S  F  P  K  S :   F  L  M  S  V  M  E  *  I  M  L  L  F  L  G  K  F  V  Q  :  L  S  R  R  E  F  A  S  S  S  L  H  L  C  R  F  P  K  R  R  I  A  C  Q  M  E  L  K  H  *  G  N  M  A  T  S  L  S  L  I  * :   L  I  V  V  Q  V  G  V  *  R  R  S  L  I  V  Q  S  P  K  M  K  R  K  W  L  K  P  C  M  L  W  L  V  *  S  Q  M  L  T  P  *  A  K  A  K  *  I  V  N  F  L  K  *  N  L  W  T  Y  Q  N  L  R  L  L  *  S  Q  V  E  :  L  *  Q  Q  N  R  T  *  G  Q  T  A  P  N  S  V  L  K  L  *  S  S  F  Q  T  *  L  F  L  L  E  K  L  P  N  Q  N  H  F  M  M  L  P  R  V  I  H  S  S  T  Q  S  S  *  K  F  H  R  N  K :   L  L  L  I  K  P  T  N  K  T  H  T  R  R  I  G  I  M  :  V  H  C  C  G  Q  A  C  L  Q  Q  G  H  L  V  P  T  Y  L  I  L  H  H   : S  F  Q  L  A  N  F  L  S  G  S  G  A  L  A  L  I  I  K  L  K  M  Q  N  L  V  Y  Q  P  *  R :   I  L  K  F  H  L  S  *  G  S  H  L  R  G  V  L  L  M  F  I  *  V  G  *  L  R  A  Y  R  L  R  *  E  V  T  Q  S  P  R  I  L  L  S  P  H  L  L  M  E  *  S  K  S  L  L  *  F  R  T  A  Q  L  *  R  *  M  I  C  M  E  L  F  L  L  G  M  L  P  L  L  L  R  R  I  Q  L  K  L  E  M  Q  S  F  C  T  K  D  S  S  K  I  S  N  R  L  L  L  H  L  G  S  I  L  *  Q  S  R :   M  Q  I  S  F  H  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64474" stop="64373"/>
                    <exon start="64292" stop="64235"/>
                    <exon start="63856" stop="63735"/>
                    <exon start="63601" stop="63394"/>
                    <exon start="63308" stop="63130"/>
                    <exon start="63054" stop="63000"/>
                    <exon start="62876" stop="62807"/>
                    <exon start="62730" stop="62640"/>
                    <exon start="62543" stop="62193"/>
                    <exon start="62124" stop="62101"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1260</number_coding_nucleotides>
                  <number_encoded_amino_acids>420</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSMNNIEMGCLKSDDNDEIHSNVSVRKRFKFPKKFFDECNGVDHASVPRKVRSVIKKRIRKLISPPLPISKKANRMSDGAETLRKYGNKSKLNLTHCGSSRCIKEELDCPITKDEEEVAETLYALAGMIPDVDTLSESKINSQLPEVKSLDLPEPEASVIASGVVTTEQDIRTNSSQFSAEALKQFPDIAVSAGEAAKSKSFHDASPCDTFINTEQLEISSQQVVAYQANKQNTHKENRNNGSLLWPGLSAAGSSCSDILDSSPQFPIGKFPVWIGSAGTDHQAQNAKSCLPTMKDSQVPLELRKSFKRCAAHVYISRLTKGLQTSMRGDTVSSHPSQSSPPDGVKQEPPIIQNSPTVKVNDMHGIVSTGNVASTVEKNPTEVRNAILLHQRLLQDQQQASTTSGFNSLAKQNADFLSLS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="68862" PGL_stop="71574"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68862" e_stop="69037"/>
            <exon e_start="69481" e_stop="70177"/>
            <exon e_start="70852" e_stop="71574"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.928" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.971" e_score="0.997"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="68862" e_stop="69037" e_length="176"/>
          </exon>
          <intron i_serial="1" don_prob="0.928" acc_prob="0.995">
            <gDNA_intron_boundary i_start="69038" i_stop="69480" i_length="443"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="69481" e_stop="70177" e_length="697"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.971">
            <gDNA_intron_boundary i_start="70178" i_stop="70851" i_length="674"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="70852" e_stop="71574" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68862" stop="69037"/>
              <exon start="69481" stop="70177"/>
              <exon start="70852" stop="71574"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317094" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACATTTCTCCTTTTTCCATTTTTAAGAGGAAGAAGAAGAAGGAGAAGGCTAGGGATTTTGATCTACAAGCTCTCTTTTGCATCATTAATATTCCCACCTTCTTCTTCAATGGCGCAAGTGAAACTGCTCTGTCTATTTGCTCTGTTTTTAACTATTACACAGCTGTTCATAGCAG : GTGTAAATTCAGCTGCAACATTTACAATGGTGAATAAATGTCAGCAAACAATTTGGCCTGGATTATTATCTAACGCCGGAATAGCTCCACTTTCCACCACTGGTTTTGTTCTACAAAAAGATGAATCGAAAACAATCAGTGTGCCCACTTCATGGGGCGGCAGATTCTGGGCTCGTACACATTGTACCGAAGATTCCACCGGAAAATTCACCTGCGCCACCGGCGATTGCGGCTCCGGTAAGCTCGAATGCGCCGGTGGCAACGCTGCACCGCCGGCAACTCTAGCTGAATTCACACTCGACGGATCCAACGGGATGGATTTCTTCGACGTCAGTTTAGTCGATGGGTACAACTTACCAATGCTTGTGGTACCACAAGGTGGTTCTGGTAACAATTGTACAAGTACCGGATGTGTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTAATGAGCCTGGGAGGCGAAAACGTCGCGTGTAAGAGCGCGTGTGAAGCTTTTCGAAAAGATGAGTATTGTTGCGCCGGAGCGTTTAATAATCCGACAACTTGTAAACCATCATCGTATTCAACGTTGTTTAAAAAAGCTTGTCCGAGTGCTTACAGCTATGCTTACGATGATAAAACGAGTACCTTCACTTGTGCTGGCGCTAATAATTATCTTATCACATTTTGTCCTTCACCTAATACCAG : TCAAAAGTCGTCATCATCATCAAGTGGACAAAATCAAAAACCAGAAGATAGTAACAATCAAAACGACAACGATAATAACAACGAGCCATCAACGATCAACAACTCTATGGTATATGATGGTGCATGGGATATCAATAGTGCATCTTCAACCACCACGTGCATGCACGTGTTCAGTTCACCGGCCATAGCCGGTGCCGTCGCCTTCTTAACAGCCTCTTTCCAGTTGCATCGTCAGCTCTACTAATTTTTTATTTTTGACTTTTTGTTGACACTCGAAAAAAAAAATTAGGCGAAAAGGCCGGCCTGACCCGGCCCATGTTATTTTGTCGGAATTTGGGGTGTTGTATCACGTGTGGACCATTAAATTGGGCCTTGTGACCCACATGTGTGGCCCATGTGACGGGGAAATGAGTCAGCTTACGTGTCAATTTAATTGACGTACACCGAATTACCTTTTAATTGGTGAAAAAAGAGGTCTCCATAGCCACAAAATTTAGAGTTTTGGAGGTTATTTAATTTTTTATTTTATTTTATTTGACTTTTTTTTAGTTTTATATTTTAAATTTTAATTAAGATTGGGATTAGGTTTTAGGAGAGGGAGATTCATTTGGTAGGTAGGTTTTAGTTAGAAAAATTATGTATAATATGCTTTTATGTTTGTAACCATTCCAAGTTGGTGGAAATTATATAAACTTAAAAAAATGGATTGGTGATTTATTTCTT</gDNA_template>
            <first_frame> Y  I  S  P  F  S  I  F  K  R  K  K  K  K  E  K  A  R  D  F  D  L  Q  A  L  F  C  I  I  N  I  P  T  F  F  F  N  G  A  S  E  T  A  L  S  I  C  S  V  F  N  Y  Y  T  A  V  H  S  R :   C  K  F  S  C  N  I  Y  N  G  E  *  M  S  A  N  N  L  A  W  I  I  I  *  R  R  N  S  S  T  F  H  H  W  F  C  S  T  K  R  *  I  E  N  N  Q  C  A  H  F  M  G  R  Q  I  L  G  S  Y  T  L  Y  R  R  F  H  R  K  I  H  L  R  H  R  R  L  R  L  R  *  A  R  M  R  R  W  Q  R  C  T  A  G  N  S  S  *  I  H  T  R  R  I  Q  R  D  G  F  L  R  R  Q  F  S  R  W  V  Q  L  T  N  A  C  G  T  T  R  W  F  W  *  Q  L  Y  K  Y  R  M  C  G  G  F  E  R  R  V  S  V  G  A  E  S  N  E  P  G  R  R  K  R  R  V  *  E  R  V  *  S  F  S  K  R  *  V  L  L  R  R  S  V  *  *  S  D  N  L  *  T  I  I  V  F  N  V  V  *  K  S  L  S  E  C  L  Q  L  C  L  R  *  *  N  E  Y  L  H  L  C  W  R  *  *  L  S  Y  H  I  L  S  F  T  *  Y  Q  :  S  K  V  V  I  I  I  K  W  T  K  S  K  T  R  R  *  *  Q  S  K  R  Q  R  *  *  Q  R  A  I  N  D  Q  Q  L  Y  G  I  *  W  C  M  G  Y  Q  *  C  I  F  N  H  H  V  H  A  R  V  Q  F  T  G  H  S  R  C  R  R  L  L  N  S  L  F  P  V  A  S  S  A  L  L  I  F  Y  F  *  L  F  V  D  T  R  K  K  K  L  G  E  K  A  G  L  T  R  P  M  L  F  C  R  N  L  G  C  C  I  T  C  G  P  L  N  W  A  L  *  P  T  C  V  A  H  V  T  G  K  *  V  S  L  R  V  N  L  I  D  V  H  R  I  T  F  *  L  V  K  K  E  V  S  I  A  T  K  F  R  V  L  E  V  I  *  F  F  I  L  F  Y  L  T  F  F  *  F  Y  I  L  N  F  N  *  D  W  D  *  V  L  G  E  G  D  S  F  G  R  *  V  L  V  R  K  I  M  Y  N  M  L  L  C  L  *  P  F  Q  V  G  G  N  Y  I  N  L  K  K  W  I  G  D  L  F  L </first_frame>
            <second_frame>  T  F  L  L  F  P  F  L  R  G  R  R  R  R  R  R  L  G  I  L  I  Y  K  L  S  F  A  S  L  I  F  P  P  S  S  S  M  A  Q  V  K  L  L  C  L  F  A  L  F  L  T  I  T  Q  L  F  I  A   : G  V  N  S  A  A  T  F  T  M  V  N  K  C  Q  Q  T  I  W  P  G  L  L  S  N  A  G  I  A  P  L  S  T  T  G  F  V  L  Q  K  D  E  S  K  T  I  S  V  P  T  S  W  G  G  R  F  W  A  R  T  H  C  T  E  D  S  T  G  K  F  T  C  A  T  G  D  C  G  S  G  K  L  E  C  A  G  G  N  A  A  P  P  A  T  L  A  E  F  T  L  D  G  S  N  G  M  D  F  F  D  V  S  L  V  D  G  Y  N  L  P  M  L  V  V  P  Q  G  G  S  G  N  N  C  T  S  T  G  C  V  V  D  L  N  G  A  C  P  S  E  L  K  V  M  S  L  G  G  E  N  V  A  C  K  S  A  C  E  A  F  R  K  D  E  Y  C  C  A  G  A  F  N  N  P  T  T  C  K  P  S  S  Y  S  T  L  F  K  K  A  C  P  S  A  Y  S  Y  A  Y  D  D  K  T  S  T  F  T  C  A  G  A  N  N  Y  L  I  T  F  C  P  S  P  N  T  S :   Q  K  S  S  S  S  S  S  G  Q  N  Q  K  P  E  D  S  N  N  Q  N  D  N  D  N  N  N  E  P  S  T  I  N  N  S  M  V  Y  D  G  A  W  D  I  N  S  A  S  S  T  T  T  C  M  H  V  F  S  S  P  A  I  A  G  A  V  A  F  L  T  A  S  F  Q  L  H  R  Q  L  Y  *  F  F  I  F  D  F  L  L  T  L  E  K  K  N  *  A  K  R  P  A  *  P  G  P  C  Y  F  V  G  I  W  G  V  V  S  R  V  D  H  *  I  G  P  C  D  P  H  V  W  P  M  *  R  G  N  E  S  A  Y  V  S  I  *  L  T  Y  T  E  L  P  F  N  W  *  K  K  R  S  P  *  P  Q  N  L  E  F  W  R  L  F  N  F  L  F  Y  F  I  *  L  F  F  S  F  I  F  *  I  L  I  K  I  G  I  R  F  *  E  R  E  I  H  L  V  G  R  F  *  L  E  K  L  C  I  I  C  F  Y  V  C  N  H  S  K  L  V  E  I  I  *  T  *  K  N  G  L  V  I  Y  F   </second_frame>
            <third_frame>   H  F  S  F  F  H  F  *  E  E  E  E  E  G  E  G  *  G  F  *  S  T  S  S  L  L  H  H  *  Y  S  H  L  L  L  Q  W  R  K  *  N  C  S  V  Y  L  L  C  F  *  L  L  H  S  C  S  *  Q  :  V  *  I  Q  L  Q  H  L  Q  W  *  I  N  V  S  K  Q  F  G  L  D  Y  Y  L  T  P  E  *  L  H  F  P  P  L  V  L  F  Y  K  K  M  N  R  K  Q  S  V  C  P  L  H  G  A  A  D  S  G  L  V  H  I  V  P  K  I  P  P  E  N  S  P  A  P  P  A  I  A  A  P  V  S  S  N  A  P  V  A  T  L  H  R  R  Q  L  *  L  N  S  H  S  T  D  P  T  G  W  I  S  S  T  S  V  *  S  M  G  T  T  Y  Q  C  L  W  Y  H  K  V  V  L  V  T  I  V  Q  V  P  D  V  W  W  I  *  T  A  R  V  R  R  S  *  K  *  *  A  W  E  A  K  T  S  R  V  R  A  R  V  K  L  F  E  K  M  S  I  V  A  P  E  R  L  I  I  R  Q  L  V  N  H  H  R  I  Q  R  C  L  K  K  L  V  R  V  L  T  A  M  L  T  M  I  K  R  V  P  S  L  V  L  A  L  I  I  I  L  S  H  F  V  L  H  L  I  P   : V  K  S  R  H  H  H  Q  V  D  K  I  K  N  Q  K  I  V  T  I  K  T  T  T  I  I  T  T  S  H  Q  R  S  T  T  L  W  Y  M  M  V  H  G  I  S  I  V  H  L  Q  P  P  R  A  C  T  C  S  V  H  R  P  *  P  V  P  S  P  S  *  Q  P  L  S  S  C  I  V  S  S  T  N  F  L  F  L  T  F  C  *  H  S  K  K  K  I  R  R  K  G  R  P  D  P  A  H  V  I  L  S  E  F  G  V  L  Y  H  V  W  T  I  K  L  G  L  V  T  H  M  C  G  P  C  D  G  E  M  S  Q  L  T  C  Q  F  N  *  R  T  P  N  Y  L  L  I  G  E  K  R  G  L  H  S  H  K  I  *  S  F  G  G  Y  L  I  F  Y  F  I  L  F  D  F  F  L  V  L  Y  F  K  F  *  L  R  L  G  L  G  F  R  R  G  R  F  I  W  *  V  G  F  S  *  K  N  Y  V  *  Y  A  F  M  F  V  T  I  P  S  W  W  K  L  Y  K  L  K  K  M  D  W  *  F  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68863" stop="69037"/>
                    <exon start="69481" stop="70177"/>
                    <exon start="70852" stop="71095"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1113</number_coding_nucleotides>
                  <number_encoded_amino_acids>371</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFLLFPFLRGRRRRRRLGILIYKLSFASLIFPPSSSMAQVKLLCLFALFLTITQLFIAGVNSAATFTMVNKCQQTIWPGLLSNAGIAPLSTTGFVLQKDESKTISVPTSWGGRFWARTHCTEDSTGKFTCATGDCGSGKLECAGGNAAPPATLAEFTLDGSNGMDFFDVSLVDGYNLPMLVVPQGGSGNNCTSTGCVVDLNGACPSELKVMSLGGENVACKSACEAFRKDEYCCAGAFNNPTTCKPSSYSTLFKKACPSAYSYAYDDKTSTFTCAGANNYLITFCPSPNTSQKSSSSSSGQNQKPEDSNNQNDNDNNNEPSTINNSMVYDGAWDINSASSTTTCMHVFSSPAIAGAVAFLTASFQLHRQLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="70348" e_stop="70862"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="70348" e_stop="70862" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70348" stop="70862"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345326" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGCCTGTCAAATGGAACGTTAGGACGTTATTTTCAATTTAAAGAAAAAATATCTGACATCATATTATTCGTAGGGGTATGTGGGCTATAAGGAAATTAGTAGGGGTATTTTGGTACTTTACATAGTATGTGAGATCATTTTTATAGGAGAATGGGTTCCACGTATAGTGAATTAGTACTTTATAACATAATATATGAGGTCATTGTAATAGGGGTATGTGGTTATATATAGGGGTATTTTAGTACTTGTGCTAACTAAGTCAGCTTTGGGAATTGGGAAAAATATCAAACTTAACGGCTTAAAGAGATTCTCTGACCCAAGACTATGAATTGTCCTTTTTATCCAAGTAGCCATAGCCCACCAATTGGTCTAGTTCTGCGTGAATTCGTCAAATTTATTCGAATCAAATGTTTATTAAAATATATTTTATTTTTATAAAATAAGAATTGATCGACATTAATAAGGATTTATATAGCTGATTCAATAATACAATTTCCATTGCAGTCAAAAGTCGT</gDNA_template>
            <first_frame> G  L  S  N  G  T  L  G  R  Y  F  Q  F  K  E  K  I  S  D  I  I  L  F  V  G  V  C  G  L  *  G  N  *  *  G  Y  F  G  T  L  H  S  M  *  D  H  F  Y  R  R  M  G  S  T  Y  S  E  L  V  L  Y  N  I  I  Y  E  V  I  V  I  G  V  C  G  Y  I  *  G  Y  F  S  T  C  A  N  *  V  S  F  G  N  W  E  K  Y  Q  T  *  R  L  K  E  I  L  *  P  K  T  M  N  C  P  F  Y  P  S  S  H  S  P  P  I  G  L  V  L  R  E  F  V  K  F  I  R  I  K  C  L  L  K  Y  I  L  F  L  *  N  K  N  *  S  T  L  I  R  I  Y  I  A  D  S  I  I  Q  F  P  L  Q  S  K  V   </first_frame>
            <second_frame>  A  C  Q  M  E  R  *  D  V  I  F  N  L  K  K  K  Y  L  T  S  Y  Y  S  *  G  Y  V  G  Y  K  E  I  S  R  G  I  L  V  L  Y  I  V  C  E  I  I  F  I  G  E  W  V  P  R  I  V  N  *  Y  F  I  T  *  Y  M  R  S  L  *  *  G  Y  V  V  I  Y  R  G  I  L  V  L  V  L  T  K  S  A  L  G  I  G  K  N  I  K  L  N  G  L  K  R  F  S  D  P  R  L  *  I  V  L  F  I  Q  V  A  I  A  H  Q  L  V  *  F  C  V  N  S  S  N  L  F  E  S  N  V  Y  *  N  I  F  Y  F  Y  K  I  R  I  D  R  H  *  *  G  F  I  *  L  I  Q  *  Y  N  F  H  C  S  Q  K  S  </second_frame>
            <third_frame>   P  V  K  W  N  V  R  T  L  F  S  I  *  R  K  N  I  *  H  H  I  I  R  R  G  M  W  A  I  R  K  L  V  G  V  F  W  Y  F  T  *  Y  V  R  S  F  L  *  E  N  G  F  H  V  *  *  I  S  T  L  *  H  N  I  *  G  H  C  N  R  G  M  W  L  Y  I  G  V  F  *  Y  L  C  *  L  S  Q  L  W  E  L  G  K  I  S  N  L  T  A  *  R  D  S  L  T  Q  D  Y  E  L  S  F  L  S  K  *  P  *  P  T  N  W  S  S  S  A  *  I  R  Q  I  Y  S  N  Q  M  F  I  K  I  Y  F  I  F  I  K  *  E  L  I  D  I  N  K  D  L  Y  S  *  F  N  N  T  I  S  I  A  V  K  S  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178J08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97160" PGL_stop="91675"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97160" e_stop="97018"/>
            <exon e_start="96521" e_stop="96401"/>
            <exon e_start="96310" e_stop="96157"/>
            <exon e_start="96077" e_stop="95997"/>
            <exon e_start="95895" e_stop="95784"/>
            <exon e_start="95701" e_stop="95575"/>
            <exon e_start="95490" e_stop="95352"/>
            <exon e_start="94610" e_stop="94493"/>
            <exon e_start="94201" e_stop="94002"/>
            <exon e_start="93898" e_stop="93683"/>
            <exon e_start="93576" e_stop="93411"/>
            <exon e_start="93330" e_stop="93189"/>
            <exon e_start="93101" e_stop="92951"/>
            <exon e_start="92711" e_stop="92310"/>
            <exon e_start="92224" e_stop="91675"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.889" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.451" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.909" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.953" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.672" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="97160" e_stop="97018" e_length="143"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97017" i_stop="96522" i_length="496"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="96521" e_stop="96401" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="96400" i_stop="96311" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96310" e_stop="96157" e_length="154"/>
          </exon>
          <intron i_serial="3" don_prob="0.889" acc_prob="1.000">
            <gDNA_intron_boundary i_start="96156" i_stop="96078" i_length="79"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="96077" e_stop="95997" e_length="81"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.993">
            <gDNA_intron_boundary i_start="95996" i_stop="95896" i_length="101"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="95895" e_stop="95784" e_length="112"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="95783" i_stop="95702" i_length="82"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="95701" e_stop="95575" e_length="127"/>
          </exon>
          <intron i_serial="6" don_prob="0.976" acc_prob="1.000">
            <gDNA_intron_boundary i_start="95574" i_stop="95491" i_length="84"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="95490" e_stop="95352" e_length="139"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.451">
            <gDNA_intron_boundary i_start="95351" i_stop="94611" i_length="741"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="94610" e_stop="94493" e_length="118"/>
          </exon>
          <intron i_serial="8" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="94492" i_stop="94202" i_length="291"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="94201" e_stop="94002" e_length="200"/>
          </exon>
          <intron i_serial="9" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="94001" i_stop="93899" i_length="103"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="93898" e_stop="93683" e_length="216"/>
          </exon>
          <intron i_serial="10" don_prob="0.909" acc_prob="0.990">
            <gDNA_intron_boundary i_start="93682" i_stop="93577" i_length="106"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="93576" e_stop="93411" e_length="166"/>
          </exon>
          <intron i_serial="11" don_prob="0.972" acc_prob="0.986">
            <gDNA_intron_boundary i_start="93410" i_stop="93331" i_length="80"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="93330" e_stop="93189" e_length="142"/>
          </exon>
          <intron i_serial="12" don_prob="0.998" acc_prob="0.953">
            <gDNA_intron_boundary i_start="93188" i_stop="93102" i_length="87"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="93101" e_stop="92951" e_length="151"/>
          </exon>
          <intron i_serial="13" don_prob="0.998" acc_prob="0.672">
            <gDNA_intron_boundary i_start="92950" i_stop="92712" i_length="239"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="92711" e_stop="92310" e_length="402"/>
          </exon>
          <intron i_serial="14" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="92309" i_stop="92225" i_length="85"/>
          </intron>
          <exon e_serial="15" e_score="0.995">
            <gDNA_exon_boundary e_start="92224" e_stop="91675" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97160" stop="97018"/>
              <exon start="96521" stop="96401"/>
              <exon start="96310" stop="96157"/>
              <exon start="96077" stop="95997"/>
              <exon start="95895" stop="95784"/>
              <exon start="95701" stop="95575"/>
              <exon start="95490" stop="95352"/>
              <exon start="94610" stop="94493"/>
              <exon start="94201" stop="94002"/>
              <exon start="93898" stop="93683"/>
              <exon start="93576" stop="93411"/>
              <exon start="93330" stop="93189"/>
              <exon start="93101" stop="92951"/>
              <exon start="92711" stop="92310"/>
              <exon start="92224" stop="91675"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACACTCTACTTTGAACGCTGCTTGTAAAATCATCGGCCGGCGACCTCTAAAGTTGAAATTCCGGTGACGGAGACAATGAGGAAGTGGAAGATCCCGTTCGTCCTGTTTCTGTTATGCCTGATTTACCTTGTTCCAGATCAAG : GTCGAAAGATACAGGCAAATGCAGAAGCTGATTCTGATGCACCAGTAGATCCACCAAAGGTTGAGGAGAAGTTTGGTGCTGTTCCTAATGGTTTATCGACTGATTCTGATGTGGCTAAGAG : GGAAGCTGAGTCTATGTCAAGGAAAACTCTCCGAGCTAGTGCGGAGAAGTTTGAGTTCCAGGCTGAGGTCTCTCGTCTTATGGACATCCTTATCAACTCTCTCTACAGTAACAAGGACATCTTTTTGAGGGAGCTGATTTCCAATGCTTCTGAT : GCACTGGACAAGATTAGGTTCCTTGCACTCACTGACAAGGAGGTTCTTGGTGAGGGTGATAATACTAAGCTTGAGATTCAG : ATTAAACTTGATAAAGAAAAGAAAATTCTTTCCATTCGCGACAGAGGTGTTGGAATGACCAAGGAGGATCTAAGAAAGAATTTGGGAACCATAGCTAAATCTGGAACTTCAG : CTTTTGTCGAGAAGATGCAGACAAGTGGTGACCTTAACCTGATTGGACAATTTGGTGTTGGGTTTTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCACAATGACGACAAACA : ATATGTCTGGGAATCAAAGGCAGATGGGGCATTTGCCATTTCTGAAGATACATGGAATGAACCTCTTGGCCGTGGAACTGAAATTAGACTGCATCTAAGAGATGAAGCAGGGGAATATTTGGATGAGCTCAAACTAAAG : GAATTGGTCAAGAAATATTCTGAATTCATCAACTTCCCTATAAATTTATGGGCAAGCAAAGAGGTTGAGAAGGAAGTTCCTGCTGATGAGGACGAGTCAGTTGATGAAGAGGAAACAT : CTGAAAGCACTTCCTCTGAGGAAGAGGGAGAAGAAGAAGATGCAGAGAAGGCCGAAGATGAGAAGAAGCCTAAAACTAAGACAGTGAAGGAAACCACATATGAGTGGGAGCTTTTAAATGACATGAAAGCTATATGGCTTCGAAGCCCAAAGGAAGTTACAGATGAAGAATATAATAAGTTCTATCACTCTCTGGCAAAG : GACTTCAGTGAAGATAAACCCATGGCGTGGAGTCACTTCAATGCTGAAGGTGATGTAGAGTTCAAGGCTGTTCTATTCATCCCTCCTAAAGCCCCTCATGATTTGTATGAGAGCTACTACAACACAAAGCAATCCAACTTGAAGTTATATGTCAGACGGGTTTTCATCTCAGATGAATTTAATGAATTGTTGCCCAAGTACTTGAATTTCCTAATG : GGTCTTGTTGATTCTGACACCTTACCCCTCAATGTCTCAAGAGAAATGCTTCAGCAGCACAGCAGTTTGAAGACAATTAAGAAAAAACTCATCCGTAAGGCCCTTGACATGATCCGCAAACTTGCCGAAGAGGATCCAGATGAAACTAATGACAAGGAGAAGAGAG : ATGTTGAAGAGTCCAGTGATGAAAATGAGAAGAAAGGTCAATATGCCAAATTCTGGAATGAATTTGGAAAGTCGATTAAGCTTGGTATTATAGAAGACGCAACTAACAGAAACCGCTTAGCTAAACTTCTTCGATTTGAGAC : AACCAAATCAGATGGTAAATTAACTTCACTTGACCAATACATCTCAAGAATGAAATCAAGTCAAAAGGATATCTTCTACATCACCGGTGCCAGCAAAGAACAGTTGGAGAAATCTCCCTTCCTTGAAAGACTTAATAAGAAAGACTATGAG : GTTATATTCTTCACCGATCCAGTAGATGAATACCTCATGCAATATCTTATGGACTATGAAGACAAAAAGTTCCAGAATGTGTCTAAAGAGGGATTAAAGCTTAAGGATTCGAAAACCAAAGAGCTCAAGGAGTCATTCAAGGGGCTAACTAAGTGGTGGAAGAATACTCTTGCTAGTGACAACGTTGAAGATGTCAAGATAAGCAGCCGTTTGGCCGACACCCCTTGTGTTGTGGTAACATCAAAATACGGATGGAGTGCATATATGGAGAAAATAATGCATTCACAAACCCTGTCAGATGCAAGCAAGCAAGCATACATGCGTGGTAAAAGGGTGCTTGAAATCAATCCTAGGCACCCAATTATCAAGGCACTTCGGGAGAGAGTAGTAACAGACCCAGAG : GACGAGAGTGTGAAGTTGACAGCAAAACTTATATACCAAACAGCTTTAATGGAGAGTGGCTTCGATCTGAGTGATCCAAAGGATTTTGCCTCCCACATCTACAGCTCAGTAAAGAGCAGTCTAAACATTAGCCCTGATGCAACAGTTGAGGAAGAAGAAGACGAAGCTGAAGAACCTGAGACTGAAACCAAGGCAGAAGAGGAGTCTGCATCGGATGAGTCTGAACTCAAGGATGAGCTATAGATAGTGTCCTAAGATATGTTCCTTTTTCCCGGAAACAACACGTTGTTGTGGTATGTTTCTCAACACGTGAAGAATGTAGGAATAGTTTAGTTCATAGTCTTAAACTTAAAAAGAATTTTGTCAGTCTTGCATTTTCGTTGTTTTAGTGTATGAGTTTGTCGTTCCGTGTAACAAATCTGGAAGGTCTTGTTTTTTCCTAATTGGAACTGGTAAAAGCTCTAGTTTTTCTAAGGAAATCAACTTTTGACGTGTTGCAATTGTTTTTCTTTCTAAATTTTACTGGAAAAATAAGTAGTGCTTGAGCATG</gDNA_template>
            <first_frame> N  T  L  L  *  T  L  L  V  K  S  S  A  G  D  L  *  S  *  N  S  G  D  G  D  N  E  E  V  E  D  P  V  R  P  V  S  V  M  P  D  L  P  C  S  R  S  R :   S  K  D  T  G  K  C  R  S  *  F  *  C  T  S  R  S  T  K  G  *  G  E  V  W  C  C  S  *  W  F  I  D  *  F  *  C  G  *  E  :  G  S  *  V  Y  V  K  E  N  S  P  S  *  C  G  E  V  *  V  P  G  *  G  L  S  S  Y  G  H  P  Y  Q  L  S  L  Q  *  Q  G  H  L  F  E  G  A  D  F  Q  C  F  *   : C  T  G  Q  D  *  V  P  C  T  H  *  Q  G  G  S  W  *  G  *  *  Y  *  A  *  D  S   : D  *  T  *  *  R  K  E  N  S  F  H  S  R  Q  R  C  W  N  D  Q  G  G  S  K  K  E  F  G  N  H  S  *  I  W  N  F  S :   F  C  R  E  D  A  D  K  W  *  P  *  P  D  W  T  I  W  C  W  V  L  L  C  V  S  C  G  *  L  C  *  S  H  Q  Q  A  Q  *  R  Q  T  :  I  C  L  G  I  K  G  R  W  G  I  C  H  F  *  R  Y  M  E  *  T  S  W  P  W  N  *  N  *  T  A  S  K  R  *  S  R  G  I  F  G  *  A  Q  T  K   : G  I  G  Q  E  I  F  *  I  H  Q  L  P  Y  K  F  M  G  K  Q  R  G  *  E  G  S  S  C  *  *  G  R  V  S  *  *  R  G  N  I :   *  K  H  F  L  *  G  R  G  R  R  R  R  C  R  E  G  R  R  *  E  E  A  *  N  *  D  S  E  G  N  H  I  *  V  G  A  F  K  *  H  E  S  Y  M  A  S  K  P  K  G  S  Y  R  *  R  I  *  *  V  L  S  L  S  G  K   : G  L  Q  *  R  *  T  H  G  V  E  S  L  Q  C  *  R  *  C  R  V  Q  G  C  S  I  H  P  S  *  S  P  S  *  F  V  *  E  L  L  Q  H  K  A  I  Q  L  E  V  I  C  Q  T  G  F  H  L  R  *  I  *  *  I  V  A  Q  V  L  E  F  P  N   : G  S  C  *  F  *  H  L  T  P  Q  C  L  K  R  N  A  S  A  A  Q  Q  F  E  D  N  *  E  K  T  H  P  *  G  P  *  H  D  P  Q  T  C  R  R  G  S  R  *  N  *  *  Q  G  E  E  R :   C  *  R  V  Q  *  *  K  *  E  E  R  S  I  C  Q  I  L  E  *  I  W  K  V  D  *  A  W  Y  Y  R  R  R  N  *  Q  K  P  L  S  *  T  S  S  I  *  D  :  N  Q  I  R  W  *  I  N  F  T  *  P  I  H  L  K  N  E  I  K  S  K  G  Y  L  L  H  H  R  C  Q  Q  R  T  V  G  E  I  S  L  P  *  K  T  *  *  E  R  L  *   : G  Y  I  L  H  R  S  S  R  *  I  P  H  A  I  S  Y  G  L  *  R  Q  K  V  P  E  C  V  *  R  G  I  K  A  *  G  F  E  N  Q  R  A  Q  G  V  I  Q  G  A  N  *  V  V  E  E  Y  S  C  *  *  Q  R  *  R  C  Q  D  K  Q  P  F  G  R  H  P  L  C  C  G  N  I  K  I  R  M  E  C  I  Y  G  E  N  N  A  F  T  N  P  V  R  C  K  Q  A  S  I  H  A  W  *  K  G  A  *  N  Q  S  *  A  P  N  Y  Q  G  T  S  G  E  S  S  N  R  P  R   : G  R  E  C  E  V  D  S  K  T  Y  I  P  N  S  F  N  G  E  W  L  R  S  E  *  S  K  G  F  C  L  P  H  L  Q  L  S  K  E  Q  S  K  H  *  P  *  C  N  S  *  G  R  R  R  R  S  *  R  T  *  D  *  N  Q  G  R  R  G  V  C  I  G  *  V  *  T  Q  G  *  A  I  D  S  V  L  R  Y  V  P  F  S  R  K  Q  H  V  V  V  V  C  F  S  T  R  E  E  C  R  N  S  L  V  H  S  L  K  L  K  K  N  F  V  S  L  A  F  S  L  F  *  C  M  S  L  S  F  R  V  T  N  L  E  G  L  V  F  S  *  L  E  L  V  K  A  L  V  F  L  R  K  S  T  F  D  V  L  Q  L  F  F  F  L  N  F  T  G  K  I  S  S  A  *  A   </first_frame>
            <second_frame>  T  L  Y  F  E  R  C  L  *  N  H  R  P  A  T  S  K  V  E  I  P  V  T  E  T  M  R  K  W  K  I  P  F  V  L  F  L  L  C  L  I  Y  L  V  P  D  Q   : G  R  K  I  Q  A  N  A  E  A  D  S  D  A  P  V  D  P  P  K  V  E  E  K  F  G  A  V  P  N  G  L  S  T  D  S  D  V  A  K  R :   E  A  E  S  M  S  R  K  T  L  R  A  S  A  E  K  F  E  F  Q  A  E  V  S  R  L  M  D  I  L  I  N  S  L  Y  S  N  K  D  I  F  L  R  E  L  I  S  N  A  S  D  :  A  L  D  K  I  R  F  L  A  L  T  D  K  E  V  L  G  E  G  D  N  T  K  L  E  I  Q  :  I  K  L  D  K  E  K  K  I  L  S  I  R  D  R  G  V  G  M  T  K  E  D  L  R  K  N  L  G  T  I  A  K  S  G  T  S   : A  F  V  E  K  M  Q  T  S  G  D  L  N  L  I  G  Q  F  G  V  G  F  Y  S  V  Y  L  V  A  D  Y  V  E  V  I  S  K  H  N  D  D  K  Q :   Y  V  W  E  S  K  A  D  G  A  F  A  I  S  E  D  T  W  N  E  P  L  G  R  G  T  E  I  R  L  H  L  R  D  E  A  G  E  Y  L  D  E  L  K  L  K  :  E  L  V  K  K  Y  S  E  F  I  N  F  P  I  N  L  W  A  S  K  E  V  E  K  E  V  P  A  D  E  D  E  S  V  D  E  E  E  T   : S  E  S  T  S  S  E  E  E  G  E  E  E  D  A  E  K  A  E  D  E  K  K  P  K  T  K  T  V  K  E  T  T  Y  E  W  E  L  L  N  D  M  K  A  I  W  L  R  S  P  K  E  V  T  D  E  E  Y  N  K  F  Y  H  S  L  A  K  :  D  F  S  E  D  K  P  M  A  W  S  H  F  N  A  E  G  D  V  E  F  K  A  V  L  F  I  P  P  K  A  P  H  D  L  Y  E  S  Y  Y  N  T  K  Q  S  N  L  K  L  Y  V  R  R  V  F  I  S  D  E  F  N  E  L  L  P  K  Y  L  N  F  L  M  :  G  L  V  D  S  D  T  L  P  L  N  V  S  R  E  M  L  Q  Q  H  S  S  L  K  T  I  K  K  K  L  I  R  K  A  L  D  M  I  R  K  L  A  E  E  D  P  D  E  T  N  D  K  E  K  R   : D  V  E  E  S  S  D  E  N  E  K  K  G  Q  Y  A  K  F  W  N  E  F  G  K  S  I  K  L  G  I  I  E  D  A  T  N  R  N  R  L  A  K  L  L  R  F  E  T :   T  K  S  D  G  K  L  T  S  L  D  Q  Y  I  S  R  M  K  S  S  Q  K  D  I  F  Y  I  T  G  A  S  K  E  Q  L  E  K  S  P  F  L  E  R  L  N  K  K  D  Y  E  :  V  I  F  F  T  D  P  V  D  E  Y  L  M  Q  Y  L  M  D  Y  E  D  K  K  F  Q  N  V  S  K  E  G  L  K  L  K  D  S  K  T  K  E  L  K  E  S  F  K  G  L  T  K  W  W  K  N  T  L  A  S  D  N  V  E  D  V  K  I  S  S  R  L  A  D  T  P  C  V  V  V  T  S  K  Y  G  W  S  A  Y  M  E  K  I  M  H  S  Q  T  L  S  D  A  S  K  Q  A  Y  M  R  G  K  R  V  L  E  I  N  P  R  H  P  I  I  K  A  L  R  E  R  V  V  T  D  P  E  :  D  E  S  V  K  L  T  A  K  L  I  Y  Q  T  A  L  M  E  S  G  F  D  L  S  D  P  K  D  F  A  S  H  I  Y  S  S  V  K  S  S  L  N  I  S  P  D  A  T  V  E  E  E  E  D  E  A  E  E  P  E  T  E  T  K  A  E  E  E  S  A  S  D  E  S  E  L  K  D  E  L  *  I  V  S  *  D  M  F  L  F  P  G  N  N  T  L  L  W  Y  V  S  Q  H  V  K  N  V  G  I  V  *  F  I  V  L  N  L  K  R  I  L  S  V  L  H  F  R  C  F  S  V  *  V  C  R  S  V  *  Q  I  W  K  V  L  F  F  P  N  W  N  W  *  K  L  *  F  F  *  G  N  Q  L  L  T  C  C  N  C  F  S  F  *  I  L  L  E  K  *  V  V  L  E  H  </second_frame>
            <third_frame>   H  S  T  L  N  A  A  C  K  I  I  G  R  R  P  L  K  L  K  F  R  *  R  R  Q  *  G  S  G  R  S  R  S  S  C  F  C  Y  A  *  F  T  L  F  Q  I  K  :  V  E  R  Y  R  Q  M  Q  K  L  I  L  M  H  Q  *  I  H  Q  R  L  R  R  S  L  V  L  F  L  M  V  Y  R  L  I  L  M  W  L  R   : G  K  L  S  L  C  Q  G  K  L  S  E  L  V  R  R  S  L  S  S  R  L  R  S  L  V  L  W  T  S  L  S  T  L  S  T  V  T  R  T  S  F  *  G  S  *  F  P  M  L  L  M :   H  W  T  R  L  G  S  L  H  S  L  T  R  R  F  L  V  R  V  I  I  L  S  L  R  F  R :   L  N  L  I  K  K  R  K  F  F  P  F  A  T  E  V  L  E  *  P  R  R  I  *  E  R  I  W  E  P  *  L  N  L  E  L  Q  :  L  L  S  R  R  C  R  Q  V  V  T  L  T  *  L  D  N  L  V  L  G  F  T  L  C  I  L  W  L  T  M  L  K  S  S  A  S  T  M  T  T  N   : N  M  S  G  N  Q  R  Q  M  G  H  L  P  F  L  K  I  H  G  M  N  L  L  A  V  E  L  K  L  D  C  I  *  E  M  K  Q  G  N  I  W  M  S  S  N  *  R :   N  W  S  R  N  I  L  N  S  S  T  S  L  *  I  Y  G  Q  A  K  R  L  R  R  K  F  L  L  M  R  T  S  Q  L  M  K  R  K  H  :  L  K  A  L  P  L  R  K  R  E  K  K  K  M  Q  R  R  P  K  M  R  R  S  L  K  L  R  Q  *  R  K  P  H  M  S  G  S  F  *  M  T  *  K  L  Y  G  F  E  A  Q  R  K  L  Q  M  K  N  I  I  S  S  I  T  L  W  Q  R :   T  S  V  K  I  N  P  W  R  G  V  T  S  M  L  K  V  M  *  S  S  R  L  F  Y  S  S  L  L  K  P  L  M  I  C  M  R  A  T  T  T  Q  S  N  P  T  *  S  Y  M  S  D  G  F  S  S  Q  M  N  L  M  N  C  C  P  S  T  *  I  S  *  W :   V  L  L  I  L  T  P  Y  P  S  M  S  Q  E  K  C  F  S  S  T  A  V  *  R  Q  L  R  K  N  S  S  V  R  P  L  T  *  S  A  N  L  P  K  R  I  Q  M  K  L  M  T  R  R  R  E  :  M  L  K  S  P  V  M  K  M  R  R  K  V  N  M  P  N  S  G  M  N  L  E  S  R  L  S  L  V  L  *  K  T  Q  L  T  E  T  A  *  L  N  F  F  D  L  R   : Q  P  N  Q  M  V  N  *  L  H  L  T  N  T  S  Q  E  *  N  Q  V  K  R  I  S  S  T  S  P  V  P  A  K  N  S  W  R  N  L  P  S  L  K  D  L  I  R  K  T  M  R :   L  Y  S  S  P  I  Q  *  M  N  T  S  C  N  I  L  W  T  M  K  T  K  S  S  R  M  C  L  K  R  D  *  S  L  R  I  R  K  P  K  S  S  R  S  H  S  R  G  *  L  S  G  G  R  I  L  L  L  V  T  T  L  K  M  S  R  *  A  A  V  W  P  T  P  L  V  L  W  *  H  Q  N  T  D  G  V  H  I  W  R  K  *  C  I  H  K  P  C  Q  M  Q  A  S  K  H  T  C  V  V  K  G  C  L  K  S  I  L  G  T  Q  L  S  R  H  F  G  R  E  *  *  Q  T  Q  R :   T  R  V  *  S  *  Q  Q  N  L  Y  T  K  Q  L  *  W  R  V  A  S  I  *  V  I  Q  R  I  L  P  P  T  S  T  A  Q  *  R  A  V  *  T  L  A  L  M  Q  Q  L  R  K  K  K  T  K  L  K  N  L  R  L  K  P  R  Q  K  R  S  L  H  R  M  S  L  N  S  R  M  S  Y  R  *  C  P  K  I  C  S  F  F  P  E  T  T  R  C  C  G  M  F  L  N  T  *  R  M  *  E  *  F  S  S  *  S  *  T  *  K  E  F  C  Q  S  C  I  F  V  V  L  V  Y  E  F  V  V  P  C  N  K  S  G  R  S  C  F  F  L  I  G  T  G  K  S  S  S  F  S  K  E  I  N  F  *  R  V  A  I  V  F  L  S  K  F  Y  W  K  N  K  *  C  L  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178J08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97132" stop="97018"/>
                    <exon start="96521" stop="96401"/>
                    <exon start="96310" stop="96157"/>
                    <exon start="96077" stop="95997"/>
                    <exon start="95895" stop="95784"/>
                    <exon start="95701" stop="95575"/>
                    <exon start="95490" stop="95352"/>
                    <exon start="94610" stop="94493"/>
                    <exon start="94201" stop="94002"/>
                    <exon start="93898" stop="93683"/>
                    <exon start="93576" stop="93411"/>
                    <exon start="93330" stop="93189"/>
                    <exon start="93101" stop="92951"/>
                    <exon start="92711" stop="92310"/>
                    <exon start="92224" stop="91982"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2484</number_coding_nucleotides>
                  <number_encoded_amino_acids>828</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHRPATSKVEIPVTETMRKWKIPFVLFLLCLIYLVPDQGRKIQANAEADSDAPVDPPKVEEKFGAVPNGLSTDSDVAKREAESMSRKTLRASAEKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGVGMTKEDLRKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLDELKLKELVKKYSEFINFPINLWASKEVEKEVPADEDESVDEEETSESTSSEEEGEEEDAEKAEDEKKPKTKTVKETTYEWELLNDMKAIWLRSPKEVTDEEYNKFYHSLAKDFSEDKPMAWSHFNAEGDVEFKAVLFIPPKAPHDLYESYYNTKQSNLKLYVRRVFISDEFNELLPKYLNFLMGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKLAEEDPDETNDKEKRDVEESSDENEKKGQYAKFWNEFGKSIKLGIIEDATNRNRLAKLLRFETTKSDGKLTSLDQYISRMKSSQKDIFYITGASKEQLEKSPFLERLNKKDYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLKDSKTKELKESFKGLTKWWKNTLASDNVEDVKISSRLADTPCVVVTSKYGWSAYMEKIMHSQTLSDASKQAYMRGKRVLEINPRHPIIKALRERVVTDPEDESVKLTAKLIYQTALMESGFDLSDPKDFASHIYSSVKSSLNISPDATVEEEEDEAEEPETETKAEEESASDESELKDEL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 37168 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2064 bytes was the average size of a spliced alignment
$ 21000 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1750 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 25 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:26:21
-->
