<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:23:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M209-F" ref_strand="+" ref_description="SGN-M209-F TG427-F [rflp_markers_forward]">
      <seq>aattgatagtccacacatatcaaacctcatatagttctcctcttcaactgggtattcaatatgataatcaaatcagaacagttccttttgctgtaatacaactgaaatgcatttcacatagccccaaaataccacatgaaagaacggaaaaagtatcataatttccaaacagagtataatagacaaaaggaagtgaacaacacattttccactaacacataataacatccagatattgcatttgccttcattagctctaaaaaagtatttgactatcaagcatgctggttattgaaaggcaaagggtaattaacaaacaacgaaaaaggaaaaagaactatgatatggataaaattcattaatctacaaagcagtttaatctaaatcataaagtagtgactacataaacttactagaaatagtcaatggcatcaatttacgggcccttaataaaaagatatcgctcaagtctccaagagccctcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="39428" stop="40515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39728" g_stop="40215" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-M209-F" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M209-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39728" e_stop="40215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGATAGTCCACACATATCAAACCTCATATAGTTCTCCTCTTCAACTGGGTATTCAATATGATAATCAAATCAGAACAGTTCCTTTTGCTGTAATACAACTGAAATGCATTTCACATAGCCCCAAAATACCACATGAAAGAACGGAAAAAGTATCATAATTTCCAAACAGAGTATAATAGACAAAAGGAAGTGAACAACACATTTTCCACTAACACATAATAACATCCAGATATTGCATTTGCCTTCATTAGCTCTAAAAAAGTATTTGACTATCAAGCATGCTGGTTATTGAAAGGCAAAGGGTAATTAACAAACAACAAAAAAGGAAAAAGAACTATGATATGGATAAAATTCATTAATCTACAAAGCAGTTTAATCTAAATCATAAAGTAGTGACTACATAAACTTACTAGAAATAGTCAATGGCATCAATTTACGGGCCCTTAATAAAAAGATATCGCTCAAGTCTCCAAGAGCCCTCATTT</genome_strand>
        <mrna_strand>AATTGATAGTCCACACATATCAAACCTCATATAGTTCTCCTCTTCAACTGGGTATTCAATATGATAATCAAATCAGAACAGTTCCTTTTGCTGTAATACAACTGAAATGCATTTCACATAGCCCCAAAATACCACATGAAAGAACGGAAAAAGTATCATAATTTCCAAACAGAGTATAATAGACAAAAGGAAGTGAACAACACATTTTCCACTAACACATAATAACATCCAGATATTGCATTTGCCTTCATTAGCTCTAAAAAAGTATTTGACTATCAAGCATGCTGGTTATTGAAAGGCAAAGGGTAATTAACAAACAACGAAAAAGGAAAAAGAACTATGATATGGATAAAATTCATTAATCTACAAAGCAGTTTAATCTAAATCATAAAGTAGTGACTACATAAACTTACTAGAAATAGTCAATGGCATCAATTTACGGGCCCTTAATAAAAAGATATCGCTCAAGTCTCCAAGAGCCCTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M209-R" ref_strand="+" ref_description="SGN-M209-R TG427-R [rflp_markers_reverse]">
      <seq>actcactatagggagacagcttgcatgcctgcagggtgtgaaagacctggcatgtgggaactctgtaatgaatttggaagcaatagagaatcactacaagtccaatggtattaacatcaaactggatccacaaatgaaagtaccctgctcggtatgtcatagtttcctgttctttggcaggaatactagtccaaatatgaatgctgctttctattttagtgggcgtgttcctcctaaagcaaatgttgctactttataaaatggtggaggggaaaggagttaaaatatttactgtgtagagctagaagttggaggtttggctggaggttgttcgtgtcctctgtttctattgttctgcattcttaagcttttgaggttgtttgggtaaatctaaatttagggtttaattgtcaaatttttaaaataaaaatgagggctcttggagacttgagcgatatctttttattaagggcccgtaaattgatgccattgactatttctagtaagtttatgtagtcactactttatgatttagattaaactgctttgtagattaatgaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="40917" stop="39780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40608" g_stop="40080" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="563" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-M209-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M209-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40608" e_stop="40080"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCGGTATGTCATAGTTTCCTGTTCTTTGGCAGGAATACTAGTCCAAATATGAATGCTGCTTTCTATTTTAGTGGGCGTGTTCCTCCTAAAGCAAATGTTGCTACTTTATAAAATGGTGGAGGGGAAAGGAGTTAAAATATTTACTGTGTAGAGCTAGAAGTTGGAGGTTTGGCTGGAGGTTGTTCGTGTCCTCTGTTTCTATTGTTCTGCATTCTTAAGCTTTTGAGGTTGTTTGGGTAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATT</genome_strand>
        <mrna_strand>GGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCGGTATGTCATAGTTTCCTGTTCTTTGGCAGGAATACTAGTCCAAATATGAATGCTGCTTTCTATTTTAGTGGGCGTGTTCCTCCTAAAGCAAATGTTGCTACTTTATAAAATGGTGGAGGGGAAAGGAGTTAAAATATTTACTGTGTAGAGCTAGAAGTTGGAGGTTTGGCTGGAGGTTGTTCGTGTCCTCTGTTTCTATTGTTCTGCATTCTTAAGCTTTTGAGGTTGTTTGGGTAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M9206-2" ref_strand="+" ref_description="SGN-M9206-2 C2_At5g64970-2 [cosii_markers]">
      <seq>acaagcaaagctgactttgacattttcccttccattatcccattgaatgccatcaaaattctcctcagcttcactatactgtagaatttagaatgactggagttcatactatttggtttaaacacttagaaagtctcacacttgtagaaaatccagatacaattttgttttctggtggattatttattgaaccgttgattccttcttcaattacatctagttttctaaaaatatcatcaattgatgattccagtgagttacattctcccatttctcgtcgtagtggaccaattttccggcgagaaaaaaagagtgttcgtgccggtattgggggtaatttcttgtgtttgagtttgtcacttaagaagaatactgatgttgttgggaattccagtgaatgtttgttgagtaatggagacgagagtccaaaggtggaagagtctagtgtcggcgatggggttgtgaagaagcgaaatattgggttacggggacgtggtgcaatgaacaccagcaaacatttgtgggctggagcagttgctgcaatggtatcaagaactgttgttgctccacttgaaagactaaagctggaatatatagttcgtggtgaacagaagcacctcttggagctcatcaaaacaattgcagttactcaaggcttgagaggcttttggaaagggaacttggttaatatacttcgtactgctccttttaaggcagttaatttttgtgcttttgacacatacagaaagcaactcctaagattatcaggaaatgaagaaactactaacatcgagcggtttgttgctggtgctgcagctggtgtgactgctactgttatgtgcttaccactggacactatccggaccaagttagtggcacggggtggagaagccttgggtggtgtggttggagcttttcaacatgtgatcagaactgaaggattcttctctctttataagggactagtaccctccattttgagtatggccccagcagcggctgttttctatggtgtatatgacatattaaaatcagcttatttgcattcacctgaaggcagaaaaagaatagagtatatgaagaatcagggagcagagctcaatgcttttgaccagcttgagttgggacctatgaggaccttacttcatggtgctattgctggtgcttgtgctgaagccgcaacttatccatttgaggtcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="52741" stop="45175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52441" g_stop="51889" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47980" g_stop="47677" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="554" r_stop="857" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47676" i_stop="45821" i_length="1856">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45820" g_stop="45475" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="858" r_stop="1203" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-M9206-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1203</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M9206-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52441" e_stop="51889"/>
          <exon e_start="47980" e_stop="47677"/>
          <exon e_start="45820" e_stop="45475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAGGTTAGTGCTTTTCTGCCGTATCTGCGTTATTGATTTCTTTACTTGTCGTTTATCCTTTTGGTATATACTAACAAGGTTAGTGCTTTTTGTCCAGTATCTATGTTGTTGATTTCTTTTCTTGTTTATCCTTTTAGTAAATACTTCCATTTGCTGCACTTAAGTAGCAGTAAGGACCGCGGACTCTCTATATTCCCAGACCGCACTCGTGGGATTACACCGAGCTGTTGTTGTCGTACACTGACAGTAGTTTGAACTTACTCGGAATATCAAATTAGTTATTGGGGATCTGTTGTTGATATCCTAGTATCACTTTGTTTTTTAGTTGCACGGACTCTTCACTTTTGATGCCGCACCCGTCTTGGATTCTTCAAAAATACACTACTTTTGGCGAATCCGACCGCACTCGTTGGGATTTTTGAAGAGTCCGAGCAACACAGCTTTGTTTTATTAGTGCCATTTGGCAAGTTGTGATTGAATTTCGAGATGTAATATATAGGAGGTATAAGGGAAATAACGAGCTACTTCATGTAGAGGAGAGAGTTTTCAATATATCATTATCTTCTTTGTGACGCAGAATAATGACTCTGCCAAATTTTGGATTGAAGAAAAATAATTACTGCAGCTTATGATTTTTGCTTATTGATGTTATTATTATCTTTGGGTCATCATAATTTTCTTAGTCTTAAGAGGGGAATTTTTCCAAATTTGAGTGGAGTGACATGATACAAGGAAATCCATGTTAGGGAGATTAAAGATTGAAAAGATCGAATGTAACAGTTACAACTCACACCTAGTCAAGTACACCCATATAAGGGAGAAGTAGTTAATTTTGTTGACAATGAAGGGGCGAATAACTATATATAGAGTTATCCTGCTTTGGGGAAAATTAGATCTCGAAACCCAAGTTTTTTAACACCCCCTACCTTGCCACTTTGACCTCATTACTAATCTGGTAGGAGTCTTGATAGTTTGAACAGTGGATATGGAATTCATTCATAATCTAGCTCATGGTTTAGGCATTCAAACAAATTGAAAGACTAAGCTGAGTTGTCATTTTACTGAAATTAGATCTAGTGTTTGCTAGGAGCCTTTTGGTTAGACACTTAATTGTGAAGGAAATTAATGTGAGGTTTCAAGTTGTTTTATAGAATTCCAAAGTAACCTAAAAAGACAAATTAATTACATGGTTTTGTTGGAAGAAAATGAATCTGAACATAATGGAATGGGTGTAGAGGATATATATATAGCCAACACAACTGGTTTGGTCAATGCATAGTTGATTGATGATTGATTACTTTTGGTGTTCGCTGTGTAGAGTTGTTGCATTATGCATAACTTCATATCTCTCTATATATATATATTGAGTAACTCCATAATTGTTTGGGGTCTAGTTGGCAGAACAATGACAAATGCTTTGTAGGAGGTGGAGATAAGAAACAAGATACGCTGCAAACATAGTATTACTTGTCAGTCTCCTATTTAACAGAGTGGATTTTCATCATAGCCTGGAGGAATTATTACATAGATGACTTTTTTTATTGCTTCCTTGCACTTGATCTCCTATGTAAATACTTAAACTGTGGGGGAATTTCCCATACTGCCTTTGAGGCAAAACTGCTTGCCGTGGAAGTTTACCTTCTTTCTTCCTTGTGCACATTTCAAAAGCAAGTACAATAATCAGGGAGCTAGATGGTGTGTTCTCTTAACAAAATATAAGGAAAAAGTTTAAAATGCACGAGGGCATTATTTGATCCACTTAGGATTCCGTTTTCTAGTCTATTCTTGCTGGTAACTCTTAAGTGGCACCTTCGGAGGTTTTCCCCATGGCGCAATGGGGTTGCTGTGCATTCATATCTTCTGGCCTCATAAATAACTACAGAAAAACCATGCGTGAACAGAAAAAGCAACTTAAAATTTTCATAACTATAATGCTATAAAAGAATGTATAAACTGGCTTATTTGTATTGATGGCAGTTGTCTGTCTCTCTTGGTCTTGGTTGTCTGTGAAAGCTTCCAGACCTTCTCAGTTGACCCTATCTACAACACCGCCATATCTTTAGTTGCATCTGAAAGATGGAATTCTAAGAAACAAGGAATGGACAATGAAGTTTCAAATATATGATAGCAAAAAAGCTGTAAATATGGATGGATATGAGGGAGAAAGGGTTTGATTTTCATAACAGAAAAACAATAATGCAGAGAAGACTGAATTTTCAATATAGGATATGAATAAAATATGGAGGAAATGCCATGAAAGGTGATGGTTTCCGTTAATTGTTTTCCAAATGTATAAGTGCTGGGAAATGGATGAGTCTTTGTTGGAGATTTATCCTGGTATTCTTCTACCTTGGGGTAAGAAGCTGTAATGGTTAATCAAGAGAGATTAATAACAGTAAAAAGAATCTGAGGCTCTGTCAAACAAGTCACACTGTGGACATAGTTACTTTAGATAATCCCATATCACTATGCTGCTGTCACGAATGAAAGTGTCATGGGTCTAGTTATCCTTCTCTTGTTGTTTTGAGGTAAAAGAATGTCCAATGTAACATTAGGATATGGTGTGGTGTCTGGTCTTACATTCCTTATTAGATATGGTAAACCCCACCACTTAAGCACCACAATTCAGGAGCAAACTGTGGCCCTTCCCCTATTTTGTTCCCTTGGTGACTCGCAACCCCAACCTCATTGAGTTAGTGGGCCTCTTTCACTAGGATATCCCTCCTTTGTCTTGGCCTTCTTTTCAGAATCAAAGGCCTATTTTCTGTTAAGTCATAAATCAATGTTTTTAAGGCATGCACGGTCATCCATTTTGCTCAAGCTTTGAACCTTTGTCTCACTTTTCAGTTACTCTACATTAGATGAATATTGTGTTTTTTCCAGATCTCCATCAAATCAACGTCCATCTTCTTAAGCCAAAAGCATCATGTTTTTCTTTGATACACTTTCTATACTCCATTCCAACATAGAGATGAATCTGAAGTAAGCTTTTACCCAAAAAGTTCGACCTGTTACTCATCAAGTCATCCATATTTCTACAATGCTATGACCTTTTAAAATCATTGTTGTTTAGTGTTATTTCCTTTTTTTTTGTTTTTGCCGGAGGGCAGGAGAGAGGTTCTTAAATCTTTTTAAAAAGTCAAACAAGACATTCATATTGAAAAGAGGAAGATTACGTTTTGACCTAATACAATTTTTAATCTGAATACTTCCAATAAAATCCTTTAATTTGGATTAAGCCTCTAGATATTCCTTATGCTCAAGTTTTTAACTTATTCTTAATCATACTGTTTCTGAATAGAAAGAAGTTAAATTTTGTATTCCCCTTGTCCCCCTCCTTTTGGTAAGTAAATATATGAAGCTTACAAATTGCCTTAATCATCTTTAGGAGTTCTCTGCAGTTTGCACCTAGATGAAATTTTGGAATGGTTTTTATTCTGAAACCATCGTGGGAGCTTCATATTGAGGAGAGAGAGGGTTGGTCCATCATTTTTATTTGGAATACGAGCTTGTCCATCCATTCCTGGTTAATTTACTTCTTCATTCTTTCTGAGCCTCTGGACACTTTTTTCAAGTCTCCATATGGTTCTGATTCCCTGTTCTTGTTCTTTGTTTCTTGTCCTCTCTGATATTGTGATGGCCAGAGTCGACAAGTAATTGTATAAACTAACACAATAGACATGTTTACTTCTTTTTGATTATTTGACGTTTGTTAGTAGTTAAAATAGTAAAATTGGTAAAAGATACAATGTACCAATTTCCAAAAAAAAAAAAAAAAAGGGTAAAAGATAGTTTAGTTTATCCTTCTATATACCTTCTAAAGTAGTTAACTTCACATTGATCTTGAACTCAAGTTCTGCTTACAATTACCTTTTGCTTCAACTCTGTTTGAATAAATCTTGTTTTTGCAGAACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACTGTAAGTCATGAGATGGAAATTTGCATTTTTTTAAGCCTTTTGATATTTCTAATTTTCACTAAGCCCATCTAAGATCGTGTATAAACACATAAAACTGTCAGTGCATTAATTTTACATTTTGATCTAGCTGTTGACAGAACTGTCAAAAGAACTTCTTTTCTATGTAATTGTTTTCTTTACTAGTACATTTCTAATCCACAAATAGCTAGAGAAAGGAAAATAAGAGAGCTCTTTTCTCTTCTTTAGAAAACATCCTTTATGTTGCTCATGGTTCTTCCCTTCCTTCAGTACAATTTCTCACCTTCTAGCTGAATCCAATAAGGAAGGCTGCAAGTACAAGTGAAATCCGAAAATAGGACTAAAATTATAAAATTAACATATGGAGTAAAAACAGAGGTATTATGTCACATAATCTTATGGTTTAAGTTCTGCAAAATACTAGCTGCTTGTCAGTTTGACTTGTGTCATTCATTGATTATAGGTTTTTCTGGTAGAAAGGAGATATCTTTTTGTTAGACTTTGATTTGCATCGGAAATTGCACAATCAAAAAACAAGAGATTCTTTATATGAAAAAGTTATGATTTGAAGGAAAGAAGGTTGATGTTTTGGATCCCTTATCTTCAAGTGTCAATAATCATCTACCCATCCCATTTTGATCCATAACTGTCCTATTTCTCGTATATTTTACAGTTGCTGATTGAAAACATGATCCATTTGGTGGTTACGCTGTTTCTAATTCATCTGTTGATGAGTTCTAACATTTCAAGCAGGTTTTGCCTCTAAACCTTTTTTGTTTTTCTAGTATTTCTTGGTGAGTTGTGGAAGGAGATAGTGGTGTAACAAGGGGAAAGGAAAGCCAGCTAGTGGCAGAAAGGACCAGGGAGGTTGGTCCTTATTGAAAAAAAAAGGAATGGGGAGGTGGGACAGTGCTTGAGTGAAAGCCTTGGGCTGTCGACAAAGAGGTTGATGATTAATAAACTCTTATCAACTTCCTCTGGCTTTTAAGCTTCTCGTCCTCAAGCAAGAACACATCATTGTGAATCCTGACTAGAAGATCCTTAAGCACATCCTTTTTTGTTTTTGCTATTTATTAATATGTATAAGGTACCAAAAGATGGGAAAACTTTTGGAATACTGAATAAAATAAAACTAAGAATCTTAATGTGTCATTTTGGATTAGAATTAAACTGACTTAGTCGAGAGAAGTTTAGGATTTAGATTTTTTTTTTCTAAAACAGATAATAGAAGGGTCCCAACTGAAGATGACATACATGGCAGGGTGAAGGAGCGAAATGCCCTGTATAAAATTTAGTACAGCAGCTACTGATAAAGAAGAAAGAAGAAAGGATTAGTACAACAGCTTTGTCCAAGAGAAAAACAAGGAATGAGATGGAAGAATAGAGCAATTTTAGCTTCATCAGGGAACTAGCAGCAAAATGGGTACTGGACAATGTCTGTTATTTTTAATATGGACCAAACTAGTTTTTCCCTCATCATTCAGGTTTGATACATGCTCCTAATATAACATAGTGCATGGAATGATATTCTGTCAACCATTAGCATCAAAGCCCTGGTTTTAGTACATAGTTTTTAGGTCTCTGATTTGAATATGTAAGAAGTTGTGTTGAAGTAGTTTGCATTTCCTCTTCTGTAAGAATGTGTAACAATCTTTTGTTTTTAATAAGTATGTATTTATAACGTGTTCACATCAGCTGATGTCCTTATTATTGATTTTTCCTTTTTTTCAGAAATGTCCATATTAGATTTGATTATCCTCCTTATGATTGGGGAAGTTGATTTTCTCTGGCTTCTGCTTTGTTATTTCCTGTGTTGCTGATAATTTAAAACCTTTCAGATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</genome_strand>
        <mrna_strand>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M87-R" ref_strand="+" ref_description="SGN-M87-R TG62-R [rflp_markers_reverse]">
      <seq>ggagaatattgtcactctatcagatagttcaaaactatcggagaatgaaatggtcaattcttctcacaagatattcatgcctagttgcagtgtccgaattaacataacatgctcaattttcatatcttgcagcaaaatttatcattgaaactctctgagatggaaacagagaacaaagaccatattggaaagcttcaatcagacatgcagaaaaaggaagatgagattcatgttttacgcaaggaaattgacaattacacggaaacagtggattcactggagaagcatgttacagagattaacaataaattggaggagaaagatcagcttgttcaggaacttcaggacaaggagaagcagttggaagctgacagagaaaaggtttttactacggatacttttagttctacaaattctattataaccaatacaatgtgttcaagtgactagtgttttgcaccttgttgcagattcaggcatctttgcttgctgctgaaagcaagctcacagaatccaaaaagcagtatgatcagatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="56829" stop="57965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57129" g_stop="57665" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="537" r_length="537" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-M87-R" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M87-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57129" e_stop="57665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGAATATTGTCACTCTATCAGATAGTTCAAAACTATCGGAGAATGAAATGGTCAATTCTTCTCACAAGATATTCATGCCTAGTTGCAGTGTCCGAATTAACATAACATGCTCAATTTTCATATCTTGCAGCAAAATTTATCATTGAAACTCTCTGAGATGGAAACAGAGAACAAAGACCATATTGGAAAGCTTCAATCAGACATGCAGAAAAAGGAAGATGAGATTCATGTTTTACGCAAGGAAATTGACAATTACACGGAAACAGTGGATTCACTGGAGAAGCATGTTACAGAGATTAACAATAAATTGGAGGAGAAAGATCAGCTTGTTCAGGAACTTCAGGACAAGGAGAAGCAGTTGGAAGCTGACAGAGAAAAGGTTTTTACTACGGATACTTTTAGTTCTACAAATTCTATTATAACCAATACAATGTGTTCAAGTGACTAGTGTTTTGCACCTTGTTGCAGATTCAGGCATCTTTGCTTGCTGCTGAAAGCAAGCTCACAGAATCCAAAAAGCAGTATGATCAGATGT</genome_strand>
        <mrna_strand>GGAGAATATTGTCACTCTATCAGATAGTTCAAAACTATCGGAGAATGAAATGGTCAATTCTTCTCACAAGATATTCATGCCTAGTTGCAGTGTCCGAATTAACATAACATGCTCAATTTTCATATCTTGCAGCAAAATTTATCATTGAAACTCTCTGAGATGGAAACAGAGAACAAAGACCATATTGGAAAGCTTCAATCAGACATGCAGAAAAAGGAAGATGAGATTCATGTTTTACGCAAGGAAATTGACAATTACACGGAAACAGTGGATTCACTGGAGAAGCATGTTACAGAGATTAACAATAAATTGGAGGAGAAAGATCAGCTTGTTCAGGAACTTCAGGACAAGGAGAAGCAGTTGGAAGCTGACAGAGAAAAGGTTTTTACTACGGATACTTTTAGTTCTACAAATTCTATTATAACCAATACAATGTGTTCAAGTGACTAGTGTTTTGCACCTTGTTGCAGATTCAGGCATCTTTGCTTGCTGCTGAAAGCAAGCTCACAGAATCCAAAAAGCAGTATGATCAGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M87-F" ref_strand="+" ref_description="SGN-M87-F TG62-F [rflp_markers_forward]">
      <seq>caaaatgcttcagctactggctaaatgaagtatgttctcaacatattcacaagcttctgtcttcgaagctcaagaagtgtcggtattatctgaattaaatagtaaagcaaagagatggttttatgtttcttaagcagcatttcttagcttaacggccctccagatatatggtggacaaaatagaatccattagatataacaaatgggattagtataatgatcttttactttgttagatgatcatactaacagattgcaagttaatcatatccaacatattctgtagatatttcacattggctagcatgaggaaaggtcatgtaggaaattgaatagagttcaattttgggaaaagttgcattgaagaaggtaacttcaacaaacgtgtgaaaaaatcacatttgagttgcccgctcaccatcgtgattccagtacgaactactcaaaaatttacttttgagccttaaacatcattttaagccttgaaaagctgcttttgaaaagatctaagcaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="59239" stop="58123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58939" g_stop="58423" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-M87-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M87-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58939" e_stop="58423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAATGCTTCAGCTACTGGCTAAATGAAGTATGTTCTCAACATATTCACAAGCTTCTGTCTTCGAAGCTCAAGAAGTGTCGGTATTATCTGAATTAAATAGTAAAGCAAAGAGATGGTTTTATGTTTCTTAAGCAGCATTTCTTAGCTTAACGGCCCTCCAGATATATGGTGGACAAAATAGAATCCATTAGATATAACAAATGGGATTAGTATAATGATCTTTTACTTTGTTAGATGATCATACTAACAGATTGCAAGTTAATCATATCCAACATATTCTGTAGATATTTCACATTGGCTAGCATGAGGAAAGGTCATGTAGGAAATTGAATAGAGTTCAATTTTGGGAAAAGTTGCATTGAAGAAGGTAACTTCAACAAACGTGTGAAAAAATCACATTTGAGTTGCCCGCTCACCATCGTGATTCCAGTACGAACTACTCAAAAATTTACTTTTGAGCCTTAAACATCATTTTAAGCCTTGAAAAGCTGCTTTTGAAAAGATCTAAGCAAGAT</genome_strand>
        <mrna_strand>CAAAATGCTTCAGCTACTGGCTAAATGAAGTATGTTCTCAACATATTCACAAGCTTCTGTCTTCGAAGCTCAAGAAGTGTCGGTATTATCTGAATTAAATAGTAAAGCAAAGAGATGGTTTTATGTTTCTTAAGCAGCATTTCTTAGCTTAACGGCCCTCCAGATATATGGTGGACAAAATAGAATCCATTAGATATAACAAATGGGATTAGTATAATGATCTTTTACTTTGTTAGATGATCATACTAACAGATTGCAAGTTAATCATATCCAACATATTCTGTAGATATTTCACATTGGCTAGCATGAGGAAAGGTCATGTAGGAAATTGAATAGAGTTCAATTTTGGGAAAAGTTGCATTGAAGAAGGTAACTTCAACAAACGTGTGAAAAAATCACATTTGAGTTGCCCGCTCACCATCGTGATTCCAGTACGAACTACTCAAAAATTTACTTTTGAGCCTTAAACATCATTTTAAGCCTTGAAAAGCTGCTTTTGAAAAGATCTAAGCAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>5</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="39728" PGL_stop="40215"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39728" e_stop="40215"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="39728" e_stop="40215" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39728" stop="40215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M209-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGATAGTCCACACATATCAAACCTCATATAGTTCTCCTCTTCAACTGGGTATTCAATATGATAATCAAATCAGAACAGTTCCTTTTGCTGTAATACAACTGAAATGCATTTCACATAGCCCCAAAATACCACATGAAAGAACGGAAAAAGTATCATAATTTCCAAACAGAGTATAATAGACAAAAGGAAGTGAACAACACATTTTCCACTAACACATAATAACATCCAGATATTGCATTTGCCTTCATTAGCTCTAAAAAAGTATTTGACTATCAAGCATGCTGGTTATTGAAAGGCAAAGGGTAATTAACAAACAACAAAAAAGGAAAAAGAACTATGATATGGATAAAATTCATTAATCTACAAAGCAGTTTAATCTAAATCATAAAGTAGTGACTACATAAACTTACTAGAAATAGTCAATGGCATCAATTTACGGGCCCTTAATAAAAAGATATCGCTCAAGTCTCCAAGAGCCCTCATTT</gDNA_template>
            <first_frame> N  *  *  S  T  H  I  K  P  H  I  V  L  L  F  N  W  V  F  N  M  I  I  K  S  E  Q  F  L  L  L  *  Y  N  *  N  A  F  H  I  A  P  K  Y  H  M  K  E  R  K  K  Y  H  N  F  Q  T  E  Y  N  R  Q  K  E  V  N  N  T  F  S  T  N  T  *  *  H  P  D  I  A  F  A  F  I  S  S  K  K  V  F  D  Y  Q  A  C  W  L  L  K  G  K  G  *  L  T  N  N  K  K  G  K  R  T  M  I  W  I  K  F  I  N  L  Q  S  S  L  I  *  I  I  K  *  *  L  H  K  L  T  R  N  S  Q  W  H  Q  F  T  G  P  *  *  K  D  I  A  Q  V  S  K  S  P  H   </first_frame>
            <second_frame>  I  D  S  P  H  I  S  N  L  I  *  F  S  S  S  T  G  Y  S  I  *  *  S  N  Q  N  S  S  F  C  C  N  T  T  E  M  H  F  T  *  P  Q  N  T  T  *  K  N  G  K  S  I  I  I  S  K  Q  S  I  I  D  K  R  K  *  T  T  H  F  P  L  T  H  N  N  I  Q  I  L  H  L  P  S  L  A  L  K  K  Y  L  T  I  K  H  A  G  Y  *  K  A  K  G  N  *  Q  T  T  K  K  E  K  E  L  *  Y  G  *  N  S  L  I  Y  K  A  V  *  S  K  S  *  S  S  D  Y  I  N  L  L  E  I  V  N  G  I  N  L  R  A  L  N  K  K  I  S  L  K  S  P  R  A  L  I  </second_frame>
            <third_frame>   L  I  V  H  T  Y  Q  T  S  Y  S  S  P  L  Q  L  G  I  Q  Y  D  N  Q  I  R  T  V  P  F  A  V  I  Q  L  K  C  I  S  H  S  P  K  I  P  H  E  R  T  E  K  V  S  *  F  P  N  R  V  *  *  T  K  G  S  E  Q  H  I  F  H  *  H  I  I  T  S  R  Y  C  I  C  L  H  *  L  *  K  S  I  *  L  S  S  M  L  V  I  E  R  Q  R  V  I  N  K  Q  Q  K  R  K  K  N  Y  D  M  D  K  I  H  *  S  T  K  Q  F  N  L  N  H  K  V  V  T  T  *  T  Y  *  K  *  S  M  A  S  I  Y  G  P  L  I  K  R  Y  R  S  S  L  Q  E  P  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="40608" PGL_stop="40080"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40608" e_stop="40080"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40608" e_stop="40080" e_length="529"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40608" stop="40080"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M209-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCGGTATGTCATAGTTTCCTGTTCTTTGGCAGGAATACTAGTCCAAATATGAATGCTGCTTTCTATTTTAGTGGGCGTGTTCCTCCTAAAGCAAATGTTGCTACTTTATAAAATGGTGGAGGGGAAAGGAGTTAAAATATTTACTGTGTAGAGCTAGAAGTTGGAGGTTTGGCTGGAGGTTGTTCGTGTCCTCTGTTTCTATTGTTCTGCATTCTTAAGCTTTTGAGGTTGTTTGGGTAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATT</gDNA_template>
            <first_frame> G  V  K  D  L  A  C  G  N  S  V  M  N  L  E  A  I  E  N  H  Y  K  S  N  G  I  N  I  K  L  D  P  Q  M  K  V  P  C  S  V  C  H  S  F  L  F  F  G  R  N  T  S  P  N  M  N  A  A  F  Y  F  S  G  R  V  P  P  K  A  N  V  A  T  L  *  N  G  G  G  E  R  S  *  N  I  Y  C  V  E  L  E  V  G  G  L  A  G  G  C  S  C  P  L  F  L  L  F  C  I  L  K  L  L  R  L  F  G  *  I  *  I  *  G  L  I  V  K  F  L  K  *  K  *  G  L  L  E  T  *  A  I  S  F  Y  *  G  P  V  N  *  C  H  *  L  F  L  V  S  L  C  S  H  Y  F  M  I  *  I  K  L  L  C  R  L  M  N  </first_frame>
            <second_frame>  V  *  K  T  W  H  V  G  T  L  *  *  I  W  K  Q  *  R  I  T  T  S  P  M  V  L  T  S  N  W  I  H  K  *  K  Y  P  A  R  Y  V  I  V  S  C  S  L  A  G  I  L  V  Q  I  *  M  L  L  S  I  L  V  G  V  F  L  L  K  Q  M  L  L  L  Y  K  M  V  E  G  K  G  V  K  I  F  T  V  *  S  *  K  L  E  V  W  L  E  V  V  R  V  L  C  F  Y  C  S  A  F  L  S  F  *  G  C  L  G  K  S  K  F  R  V  *  L  S  N  F  *  N  K  N  E  G  S  W  R  L  E  R  Y  L  F  I  K  G  P  *  I  D  A  I  D  Y  F  *  *  V  Y  V  V  T  T  L  *  F  R  L  N  C  F  V  D  *  *  I </second_frame>
            <third_frame>   C  E  R  P  G  M  W  E  L  C  N  E  F  G  S  N  R  E  S  L  Q  V  Q  W  Y  *  H  Q  T  G  S  T  N  E  S  T  L  L  G  M  S  *  F  P  V  L  W  Q  E  Y  *  S  K  Y  E  C  C  F  L  F  *  W  A  C  S  S  *  S  K  C  C  Y  F  I  K  W  W  R  G  K  E  L  K  Y  L  L  C  R  A  R  S  W  R  F  G  W  R  L  F  V  S  S  V  S  I  V  L  H  S  *  A  F  E  V  V  W  V  N  L  N  L  G  F  N  C  Q  I  F  K  I  K  M  R  A  L  G  D  L  S  D  I  F  L  L  R  A  R  K  L  M  P  L  T  I  S  S  K  F  M  *  S  L  L  Y  D  L  D  *  T  A  L  *  I  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40608" stop="40384"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GVKDLACGNSVMNLEAIENHYKSNGINIKLDPQMKVPCSVCHSFLFFGRNTSPNMNAAFYFSGRVPPKANVATL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="52441" PGL_stop="45475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52441" e_stop="51889"/>
            <exon e_start="47980" e_stop="47677"/>
            <exon e_start="45820" e_stop="45475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52441" e_stop="51889" e_length="553"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47980" e_stop="47677" e_length="304"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47676" i_stop="45821" i_length="1856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45820" e_stop="45475" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="51889"/>
              <exon start="47980" stop="47677"/>
              <exon start="45820" stop="45475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M9206-2" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAG : AACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACT : ATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</gDNA_template>
            <first_frame> T  S  K  A  D  F  D  I  F  P  S  I  I  P  L  N  A  I  K  I  L  L  S  F  T  I  L  *  N  L  E  *  L  E  F  I  L  F  G  L  N  T  *  K  V  S  H  L  *  K  I  Q  I  Q  F  C  F  L  V  D  Y  L  L  N  R  *  F  L  L  Q  L  H  L  V  F  *  K  Y  H  Q  L  M  I  P  V  S  Y  I  L  P  F  L  V  V  V  D  Q  F  S  G  E  K  K  R  V  F  V  P  V  L  G  V  I  S  C  V  *  V  C  H  L  R  R  I  L  M  L  L  G  I  P  V  N  V  C  *  V  M  E  T  R  V  Q  R  W  K  S  L  V  S  A  M  G  L  *  R  S  E  I  L  G  Y  G  D  V  V  Q  *  T  P  A  N  I  C  G  L  E  Q  L  L  Q  W  Y  Q   : E  L  L  L  L  H  L  K  D  *  S  W  N  I  *  F  V  V  N  R  S  T  S  W  S  S  S  K  Q  L  Q  L  L  K  A  *  E  A  F  G  K  G  T  W  L  I  Y  F  V  L  L  L  L  R  Q  L  I  F  V  L  L  T  H  T  E  S  N  S  *  D  Y  Q  E  M  K  K  L  L  T  S  S  G  L  L  L  V  L  Q  L  V  *  L  L  L  L  C  A  Y  H  W  T  L :   S  G  P  S  *  W  H  G  V  E  K  P  W  V  V  W  L  E  L  F  N  M  *  S  E  L  K  D  S  S  L  F  I  R  D  *  Y  P  P  F  *  V  W  P  Q  Q  R  L  F  S  M  V  Y  M  T  Y  *  N  Q  L  I  C  I  H  L  K  A  E  K  E  *  S  I  *  R  I  R  E  Q  S  S  M  L  L  T  S  L  S  W  D  L  *  G  P  Y  F  M  V  L  L  L  V  L  V  L  K  P  Q  L  I  H  L  R  S  L </first_frame>
            <second_frame>  Q  A  K  L  T  L  T  F  S  L  P  L  S  H  *  M  P  S  K  F  S  S  A  S  L  Y  C  R  I  *  N  D  W  S  S  Y  Y  L  V  *  T  L  R  K  S  H  T  C  R  K  S  R  Y  N  F  V  F  W  W  I  I  Y  *  T  V  D  S  F  F  N  Y  I  *  F  S  K  N  I  I  N  *  *  F  Q  *  V  T  F  S  H  F  S  S  *  W  T  N  F  P  A  R  K  K  E  C  S  C  R  Y  W  G  *  F  L  V  F  E  F  V  T  *  E  E  Y  *  C  C  W  E  F  Q  *  M  F  V  E  *  W  R  R  E  S  K  G  G  R  V  *  C  R  R  W  G  C  E  E  A  K  Y  W  V  T  G  T  W  C  N  E  H  Q  Q  T  F  V  G  W  S  S  C  C  N  G  I  K  :  N  C  C  C  S  T  *  K  T  K  A  G  I  Y  S  S  W  *  T  E  A  P  L  G  A  H  Q  N  N  C  S  Y  S  R  L  E  R  L  L  E  R  E  L  G  *  Y  T  S  Y  C  S  F  *  G  S  *  F  L  C  F  *  H  I  Q  K  A  T  P  K  I  I  R  K  *  R  N  Y  *  H  R  A  V  C  C  W  C  C  S  W  C  D  C  Y  C  Y  V  L  T  T  G  H   : Y  P  D  Q  V  S  G  T  G  W  R  S  L  G  W  C  G  W  S  F  S  T  C  D  Q  N  *  R  I  L  L  S  L  *  G  T  S  T  L  H  F  E  Y  G  P  S  S  G  C  F  L  W  C  I  *  H  I  K  I  S  L  F  A  F  T  *  R  Q  K  K  N  R  V  Y  E  E  S  G  S  R  A  Q  C  F  *  P  A  *  V  G  T  Y  E  D  L  T  S  W  C  Y  C  W  C  L  C  *  S  R  N  L  S  I  *  G  H   </second_frame>
            <third_frame>   K  Q  S  *  L  *  H  F  P  F  H  Y  P  I  E  C  H  Q  N  S  P  Q  L  H  Y  T  V  E  F  R  M  T  G  V  H  T  I  W  F  K  H  L  E  S  L  T  L  V  E  N  P  D  T  I  L  F  S  G  G  L  F  I  E  P  L  I  P  S  S  I  T  S  S  F  L  K  I  S  S  I  D  D  S  S  E  L  H  S  P  I  S  R  R  S  G  P  I  F  R  R  E  K  K  S  V  R  A  G  I  G  G  N  F  L  C  L  S  L  S  L  K  K  N  T  D  V  V  G  N  S  S  E  C  L  L  S  N  G  D  E  S  P  K  V  E  E  S  S  V  G  D  G  V  V  K  K  R  N  I  G  L  R  G  R  G  A  M  N  T  S  K  H  L  W  A  G  A  V  A  A  M  V  S  R :   T  V  V  A  P  L  E  R  L  K  L  E  Y  I  V  R  G  E  Q  K  H  L  L  E  L  I  K  T  I  A  V  T  Q  G  L  R  G  F  W  K  G  N  L  V  N  I  L  R  T  A  P  F  K  A  V  N  F  C  A  F  D  T  Y  R  K  Q  L  L  R  L  S  G  N  E  E  T  T  N  I  E  R  F  V  A  G  A  A  A  G  V  T  A  T  V  M  C  L  P  L  D  T  :  I  R  T  K  L  V  A  R  G  G  E  A  L  G  G  V  V  G  A  F  Q  H  V  I  R  T  E  G  F  F  S  L  Y  K  G  L  V  P  S  I  L  S  M  A  P  A  A  A  V  F  Y  G  V  Y  D  I  L  K  S  A  Y  L  H  S  P  E  G  R  K  R  I  E  Y  M  K  N  Q  G  A  E  L  N  A  F  D  Q  L  E  L  G  P  M  R  T  L  L  H  G  A  I  A  G  A  C  A  E  A  A  T  Y  P  F  E  V  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52421" stop="51889"/>
                    <exon start="47980" stop="47677"/>
                    <exon start="45820" stop="45476"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFPFHYPIECHQNSPQLHYTVEFRMTGVHTIWFKHLESLTLVENPDTILFSGGLFIEPLIPSSITSSFLKISSIDDSSELHSPISRRSGPIFRREKKSVRAGIGGNFLCLSLSLKKNTDVVGNSSECLLSNGDESPKVEESSVGDGVVKKRNIGLRGRGAMNTSKHLWAGAVAAMVSRTVVAPLERLKLEYIVRGEQKHLLELIKTIAVTQGLRGFWKGNLVNILRTAPFKAVNFCAFDTYRKQLLRLSGNEETTNIERFVAGAAAGVTATVMCLPLDTIRTKLVARGGEALGGVVGAFQHVIRTEGFFSLYKGLVPSILSMAPAAAVFYGVYDILKSAYLHSPEGRKRIEYMKNQGAELNAFDQLELGPMRTLLHGAIAGACAEAATYPFEVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="57129" PGL_stop="57665"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57129" e_stop="57665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57129" e_stop="57665" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57129" stop="57665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M87-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAGAATATTGTCACTCTATCAGATAGTTCAAAACTATCGGAGAATGAAATGGTCAATTCTTCTCACAAGATATTCATGCCTAGTTGCAGTGTCCGAATTAACATAACATGCTCAATTTTCATATCTTGCAGCAAAATTTATCATTGAAACTCTCTGAGATGGAAACAGAGAACAAAGACCATATTGGAAAGCTTCAATCAGACATGCAGAAAAAGGAAGATGAGATTCATGTTTTACGCAAGGAAATTGACAATTACACGGAAACAGTGGATTCACTGGAGAAGCATGTTACAGAGATTAACAATAAATTGGAGGAGAAAGATCAGCTTGTTCAGGAACTTCAGGACAAGGAGAAGCAGTTGGAAGCTGACAGAGAAAAGGTTTTTACTACGGATACTTTTAGTTCTACAAATTCTATTATAACCAATACAATGTGTTCAAGTGACTAGTGTTTTGCACCTTGTTGCAGATTCAGGCATCTTTGCTTGCTGCTGAAAGCAAGCTCACAGAATCCAAAAAGCAGTATGATCAGATGT</gDNA_template>
            <first_frame> G  E  Y  C  H  S  I  R  *  F  K  T  I  G  E  *  N  G  Q  F  F  S  Q  D  I  H  A  *  L  Q  C  P  N  *  H  N  M  L  N  F  H  I  L  Q  Q  N  L  S  L  K  L  S  E  M  E  T  E  N  K  D  H  I  G  K  L  Q  S  D  M  Q  K  K  E  D  E  I  H  V  L  R  K  E  I  D  N  Y  T  E  T  V  D  S  L  E  K  H  V  T  E  I  N  N  K  L  E  E  K  D  Q  L  V  Q  E  L  Q  D  K  E  K  Q  L  E  A  D  R  E  K  V  F  T  T  D  T  F  S  S  T  N  S  I  I  T  N  T  M  C  S  S  D  *  C  F  A  P  C  C  R  F  R  H  L  C  L  L  L  K  A  S  S  Q  N  P  K  S  S  M  I  R  C </first_frame>
            <second_frame>  E  N  I  V  T  L  S  D  S  S  K  L  S  E  N  E  M  V  N  S  S  H  K  I  F  M  P  S  C  S  V  R  I  N  I  T  C  S  I  F  I  S  C  S  K  I  Y  H  *  N  S  L  R  W  K  Q  R  T  K  T  I  L  E  S  F  N  Q  T  C  R  K  R  K  M  R  F  M  F  Y  A  R  K  L  T  I  T  R  K  Q  W  I  H  W  R  S  M  L  Q  R  L  T  I  N  W  R  R  K  I  S  L  F  R  N  F  R  T  R  R  S  S  W  K  L  T  E  K  R  F  L  L  R  I  L  L  V  L  Q  I  L  L  *  P  I  Q  C  V  Q  V  T  S  V  L  H  L  V  A  D  S  G  I  F  A  C  C  *  K  Q  A  H  R  I  Q  K  A  V  *  S  D   </second_frame>
            <third_frame>   R  I  L  S  L  Y  Q  I  V  Q  N  Y  R  R  M  K  W  S  I  L  L  T  R  Y  S  C  L  V  A  V  S  E  L  T  *  H  A  Q  F  S  Y  L  A  A  K  F  I  I  E  T  L  *  D  G  N  R  E  Q  R  P  Y  W  K  A  S  I  R  H  A  E  K  G  R  *  D  S  C  F  T  Q  G  N  *  Q  L  H  G  N  S  G  F  T  G  E  A  C  Y  R  D  *  Q  *  I  G  G  E  R  S  A  C  S  G  T  S  G  Q  G  E  A  V  G  S  *  Q  R  K  G  F  Y  Y  G  Y  F  *  F  Y  K  F  Y  Y  N  Q  Y  N  V  F  K  *  L  V  F  C  T  L  L  Q  I  Q  A  S  L  L  A  A  E  S  K  L  T  E  S  K  K  Q  Y  D  Q  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57231" stop="57578"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HNMLNFHILQQNLSLKLSEMETENKDHIGKLQSDMQKKEDEIHVLRKEIDNYTETVDSLEKHVTEINNKLEEKDQLVQELQDKEKQLEADREKVFTTDTFSSTNSIITNTMCSSD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57277" stop="57552"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NSLRWKQRTKTILESFNQTCRKRKMRFMFYARKLTITRKQWIHWRSMLQRLTINWRRKISLFRNFRTRRSSWKLTEKRFLLRILLVLQILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="58939" PGL_stop="58423"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58939" e_stop="58423"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58939" e_stop="58423" e_length="517"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58939" stop="58423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M87-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAATGCTTCAGCTACTGGCTAAATGAAGTATGTTCTCAACATATTCACAAGCTTCTGTCTTCGAAGCTCAAGAAGTGTCGGTATTATCTGAATTAAATAGTAAAGCAAAGAGATGGTTTTATGTTTCTTAAGCAGCATTTCTTAGCTTAACGGCCCTCCAGATATATGGTGGACAAAATAGAATCCATTAGATATAACAAATGGGATTAGTATAATGATCTTTTACTTTGTTAGATGATCATACTAACAGATTGCAAGTTAATCATATCCAACATATTCTGTAGATATTTCACATTGGCTAGCATGAGGAAAGGTCATGTAGGAAATTGAATAGAGTTCAATTTTGGGAAAAGTTGCATTGAAGAAGGTAACTTCAACAAACGTGTGAAAAAATCACATTTGAGTTGCCCGCTCACCATCGTGATTCCAGTACGAACTACTCAAAAATTTACTTTTGAGCCTTAAACATCATTTTAAGCCTTGAAAAGCTGCTTTTGAAAAGATCTAAGCAAGAT</gDNA_template>
            <first_frame> Q  N  A  S  A  T  G  *  M  K  Y  V  L  N  I  F  T  S  F  C  L  R  S  S  R  S  V  G  I  I  *  I  K  *  *  S  K  E  M  V  L  C  F  L  S  S  I  S  *  L  N  G  P  P  D  I  W  W  T  K  *  N  P  L  D  I  T  N  G  I  S  I  M  I  F  Y  F  V  R  *  S  Y  *  Q  I  A  S  *  S  Y  P  T  Y  S  V  D  I  S  H  W  L  A  *  G  K  V  M  *  E  I  E  *  S  S  I  L  G  K  V  A  L  K  K  V  T  S  T  N  V  *  K  N  H  I  *  V  A  R  S  P  S  *  F  Q  Y  E  L  L  K  N  L  L  L  S  L  K  H  H  F  K  P  *  K  A  A  F  E  K  I  *  A  R  </first_frame>
            <second_frame>  K  M  L  Q  L  L  A  K  *  S  M  F  S  T  Y  S  Q  A  S  V  F  E  A  Q  E  V  S  V  L  S  E  L  N  S  K  A  K  R  W  F  Y  V  S  *  A  A  F  L  S  L  T  A  L  Q  I  Y  G  G  Q  N  R  I  H  *  I  *  Q  M  G  L  V  *  *  S  F  T  L  L  D  D  H  T  N  R  L  Q  V  N  H  I  Q  H  I  L  *  I  F  H  I  G  *  H  E  E  R  S  C  R  K  L  N  R  V  Q  F  W  E  K  L  H  *  R  R  *  L  Q  Q  T  C  E  K  I  T  F  E  L  P  A  H  H  R  D  S  S  T  N  Y  S  K  I  Y  F  *  A  L  N  I  I  L  S  L  E  K  L  L  L  K  R  S  K  Q  D </second_frame>
            <third_frame>   K  C  F  S  Y  W  L  N  E  V  C  S  Q  H  I  H  K  L  L  S  S  K  L  K  K  C  R  Y  Y  L  N  *  I  V  K  Q  R  D  G  F  M  F  L  K  Q  H  F  L  A  *  R  P  S  R  Y  M  V  D  K  I  E  S  I  R  Y  N  K  W  D  *  Y  N  D  L  L  L  C  *  M  I  I  L  T  D  C  K  L  I  I  S  N  I  F  C  R  Y  F  T  L  A  S  M  R  K  G  H  V  G  N  *  I  E  F  N  F  G  K  S  C  I  E  E  G  N  F  N  K  R  V  K  K  S  H  L  S  C  P  L  T  I  V  I  P  V  R  T  T  Q  K  F  T  F  E  P  *  T  S  F  *  A  L  K  S  C  F  *  K  D  L  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 10 chains have been computed
$ 
$ memory statistics:
$ 9928 bytes spliced alignments in total
$ 5 spliced alignments have been stored
$ 1985 bytes was the average size of a spliced alignment
$ 10296 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2059 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 10 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:23:37
-->
