<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:21:17"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E400567" ref_strand="+" ref_description="SGN-E400567 [PPC-1-B5]">
      <seq>gctaatatagacatttggctcagcacatttagtacagcattcacctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcgtctggattttcatcctcatctgtcgggcatccccccccccccccatttacctatcataccacatatgtgtctctgctgtatattatagaagattttcataaggccaaataagtattagaaagaggttgcagtcctctgtcaagctcacacttgtgccttttgttttccttctcttttctgctacttacattttgatggcaataacgattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactctgtttgacggatgtacatgtgtcggaacattgtcattatatttttgttgtcggaacattgtcattattctataagatttctagtttgnaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="1662" stop="599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1362" g_stop="900" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="469" r_length="469" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="470" polyA_stop="488"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E400567" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E400567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1362" e_stop="900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCAT----------CCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTTATGGGAACATTGTCATTATTCTATAAGATTTCTAGTTTGAAC</genome_strand>
        <mrna_strand>GCTAATATAGACATTTGGCTCAGCACATTTAGTACAGCATTCACCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCCCCCCCCCCCATTTACCTATCATACCACATATGTGTCTCTGCTGTATATTATAGAAGATTTTCATAAGGCCAAATAAGTATTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTG-TTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGT-GTCGGAACATTGTCAT-T-ATATTTTTGTTGTCGGAACATTGTCATTATTCTATAAGATTTCTAGTTTGNAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615604" ref_strand="-" ref_description="SGN-E615604 [65404]">
      <seq>ggccaaataagtattagaaagaggttgcagtcctctgtcaagctcacacttgtgccttttgttttccttctcttttctgctacttacattttgatggcaataacgattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactctgtttgacggatgtacatgtgtcggaacattgtcattatatttttgttgtcggaacattgtcattattctataagatttctagtttgaacaaaaaaaaaaactaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="1454" stop="599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1154" g_stop="900" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="252" polyA_stop="263"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E615604" ref_strand="-">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E615604" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1154" e_stop="900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTTATGGGAACATTGTCATTATTCTATAAGATTTCTAGTTTGAAC</genome_strand>
        <mrna_strand>GGCCAAATAAGTATTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTG-TTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGT-GTCGGAACATTGTCAT-T-ATATTTTTGTTGTCGGAACATTGTCATTATTCTATAAGATTTCTAGTTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E589054" ref_strand="+" ref_description="SGN-E589054 [42620]">
      <seq>ttgtgaagattcaacagcagaatcttccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtactaactattcagaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagctacgatagctacaaggtggagaagcaagtggctaatatagacatttggctcagcacatttagtacagctttcacctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcatctggattttcatcctcatctggtcgggcatccccatttacctatcataccatatatgtgtctctgctgtttagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgcctttttttcccttctcttttctgctacttacatttggatggcaataacgattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactttgtttgactgatgtacatgtggtttgagcagcttcatcttatattttgttgtcggaacattgtcattattctataaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="2366" stop="614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2066" g_stop="1866" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="201" r_length="201" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1411" g_stop="914" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="697" r_length="496" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E589054" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E589054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2066" e_stop="1866"/>
          <exon e_start="1411" e_stop="914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCT-GTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTTATGGGAACATTGTCATTATTCTATAAGA</genome_strand>
        <mrna_strand>TTGTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTACTAACTATTCAGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGCTACGATAGCTACAAGGTGGAGAAGCAAGTGGCTAATATAGACATTTGGCTCAGCACATTTAGTACAGCTTTCACCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCATCTGGATTTTCATCCTCATCTGGTCGGGCATCCCCATTTACCTATCATACCATATATGTGTCTCTGCTGTTTAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCC-TTT-TTTTCCCTTCTCTTTTCTGCTACTTACATTTGGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTTTGTTTGACTGATGTACATGTGGTTTGAGCAGCTTCATCTTATA-TTTTGTTGTCGGAACATTGTCATTATTCTATAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E747558" ref_strand="+" ref_description="SGN-E747558 [GI|5524200]">
      <seq>ataaccaatcaccctcaatctcactttctcctccctctttctctggagaggtttgtttttttgggtggacaatgcctatagtaacttcacaagaatagcatctcatcattcatcaaagaataacatttggggtttgttaaagttaggttctttactagaatttgcctaaaaaaaatcatctttgtaatctttatctcctcagtgaaagctacagggaacagtcaaagtatagataagattaaccccaatatacttctgtctaagaaagactcaataacatggtgtttacatagtaagagagaaaaatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatgatcctatttcacttgtgagagatcatcgcacaaaagaaatcttaacagctcaaggtatatcagtgcgttcctttaatgctgatttgctctatgaaccatgggaagttaatgacgatgaaggtcgcccgttcacaacattttctgctttttgggagaaatgccttagcatgccttatgatccagaagctccacttcttcctcccaaaaggattatatctggtgatgcatcaagatgcccttcagacaacttggtatttgaagatgaatcagagaaaggaagcaatgcacttcttgctcgggcatggtcacctggctggagtaatgctgataaagcactaactactttcgttaatggaccattacttgagtactcgcagaaccgtcggaaagctgatagtgcaacaacatcctttctatctccacatttacattttggggaagtcagtgttcgtaaggtattccattttgttcgcatcaagcaagttctctgggccaatgaaggaaataaagctggtgaagagagtgttaatttgttccttaagtccattgggctgagggagtactcaagatacatgagttttaatcatccttatagccatgaaaggccccttcttggtcacctaaggtacttcccatgggtagtggatgaaggctactttaaggcatggagacaaggtagaacaggttatcctttggttgatgctggtatgagagagttatgggcaactggttggcttcatgatcgtatccgagtcgtggtatctagtttctttgtgaaggttctgcagcttccatggaggtgggggatgaagtatttttgggacacattgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtaccctacctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgaccctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatggatacaccatccatggaatgcaccagaatctgtgcttgaagctgctggcattgagctgggttccaattatcctcttcctatagttgaaattgattcagcaaaagttagactagaacaagccctatcacaaatgtggcagaatgatgcagctgcaagagctgcgattgagaatggtatggaagaaggacatggtgactctgctgactccccaatagcatttcctcaggccatgcatatggaaatggaccatgaaccagtcaggaacaaccctgtaatagttactgttcgacgctatgaagatcaaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactccgtggacattaggaattcagttgtggaaagtagggcagaagttccaacagacatcaatgtagctgaagttcataggagagacacgcgtgaccaagccgtcatgcaaactgctcgaaccaatgctaccccacattttaattttgcggtaggtaggaggaattctgaagattcaacagcagaatcttccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtagtaactattcggaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagttacgatagcaacaaggcggagaagcaagtggctaatacagacatttggctcagcacatttagtacagcattcatctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcgtctggattttcatcctcatctgtcgggcatccccatttacctattataccatatatgtgtctctgctgtatagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgccttttgtttttccttctcttttctgctacttacattttgatggcaataacgattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactctgtttgacggatgtacatgtggtttaagcagcttcatctcatatttttgttaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6320" stop="641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6020" g_stop="5362" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4747" g_stop="4529" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="878" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4528" i_stop="3968" i_length="561">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3967" g_stop="3261" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="879" r_stop="1585" r_length="707" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2662" g_stop="1866" g_length="797"/>
          <reference_exon_boundary r_type="cDNA" r_start="1586" r_stop="2382" r_length="797" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="1411" g_stop="942" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="2383" r_stop="2852" r_length="470" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2853" polyA_stop="2868"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E747558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>2852</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6020" e_stop="5362"/>
          <exon e_start="4747" e_stop="4529"/>
          <exon e_start="3967" e_stop="3261"/>
          <exon e_start="2662" e_stop="1866"/>
          <exon e_start="1411" e_stop="942"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTCCTTTTTTTGGCTTTCCTTTGTAATCATTTTGTTTGATTTGATTATTCTTAATGTTGTTTCAAAAGTTATTAGTACTATATTGTTGGGATGGCTTAATTGGGATTGGTGCTTCCTATATGTCCTTTTAAGAATAAGATATTGAGTTGTCTTCTGGTAAACATAATAAATTATTAGCATGTGTCTTCCTCATATAACTAAAGAATTTTAAGTGCAATACTTTTTGCTATGCTCAATCCTCAGTGCTTGTAGCATTCTCTGGCTACTAATTTGTTTAGTGCCTGAATTAGAACTACAGTAATCTGGATTTGTTGTACTAAACATATTCCATATCCTTATTATTTGATTAATAGAAGCAGAAAGGGTGTTGCTTGACATTTGATCTGATCATGGTTGAATGGATAATTGCTAATAGATATGCATGGCTTTTATTTTAAGCATCTCTTTACAGTACAAGGATTTATAAGATGCATAGTTTTGCTCAGCCAATTTCATCCACTACCTTATCCTGACCAACACCTTTGACTTCTTTGGCTTTAGATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCCAAAAGGATTATATCTGGTTTGTTCTCATCTGAGCTTCTCCATATCTTGTTGGCTTTCTGGATAAATTTCTATTATTTTTTGTACATATTTTTGTAACATAAGGTGCTTAGGGTAGAAGGTTAGTAGGGCATGAAGGGTCTTTCAGAAACAACCTCTCTACCTCCACAATGTAGGGGTAATATCCGCGTATATTCTACCGCCGCTTGTAGGATTATACTGGGTATGTTGTTGTCGTGCTTGGCTTAGTGTTACGTTCCACCAATGATGCACACAAATTAGGAGATCTCCCTCCAGGTAATAGATATATTAATTGTCAGATAAAAATAATGTCATTGCACCGTAATGAACGTGTTGCTACACTTTAAGCTCGGAGATCACTACATGGTGTATAATGTGAATGTTGCAGGTATTCAAGTCCTTCAAAAGTGGAAAGGTGATAATGAACATTTAGATGTTTGAGCTGTCACTAACAAGCTAAGGGCTAAAACAAATTCCTAGGATGGTGTTAATGTACTTATAGGAGCACTGGTTTAGATTTTAATTTAGTTTTTACATGGATTCATGTGCAAACTTTCAGGTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGCTGGAGTAATGCTGATAAAGCACTAACTACTTTCGTTAATGGACCATTACTTGAGTACTCGCAGAACCGTCGGAAAGCTGATAGTGCAACAACATCCTTTCTATCTCCACATTTACATTTTGGGGAAGTCAGTGTTCGTAAGGTATTCCATTTTGTTCGCATCAAGCAAGTTCTCTGGGCCAATGAAGGAAATAAAGCTGGTGAAGAGAGTGTTAATTTGTTCCTTAAGTCCATTGGGCTGAGGGAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAGGTATGTTAGGGTAATCTTTGATGAGAATCTCTTCTTTCAATTGGAATTTTTCATAACTTCATAGTTGAAATTCCTTTTCTTCTATTTCTCTAACATAGTAGAGTTGCTGGAACACCAATTATAGACTACTACCGTAATTTTTTTTAATAACTTTACGACTATTCTACACTTCGAATGGTTATAGCCTTCCATGTTGCGGTAAGTGTTATTTTCAGATTGTAAGTTAGTTTCCAGGCACTGACTTGCTAGTAGACATTGCATGAACATCTCATGGGCCTCAATCTTCTTACAGAAAGTGCTAAAGCTTAAGATGGAATGTGTGTGTGAATGCCTAATTGCAAATTCTGCTTCTTTTATATCCTGAGATATTACTTATTAGTACAGTGACTGTGAGCTTCTTTTGGTATTAAATTGATATGCGAGTCTTTTCAATACAAGAAACCCTTCCTTCTGTTTCTCTTGTTTTTTCATGTAAAACAAAAGTGAGGCTGCAGATTTTGCTATATATATCCCTTTTTCCGTTTCTGTTCTTGTTTCTTCATGTGAATTTTCTTGGTAAAGGCTGAATAGTTATTTGAACCTGTTCTCTTTCTGGCAGTTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTT</genome_strand>
        <mrna_strand>ATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCCAAAAGGATTATATCTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGCTGGAGTAATGCTGATAAAGCACTAACTACTTTCGTTAATGGACCATTACTTGAGTACTCGCAGAACCGTCGGAAAGCTGATAGTGCAACAACATCCTTTCTATCTCCACATTTACATTTTGGGGAAGTCAGTGTTCGTAAGGTATTCCATTTTGTTCGCATCAAGCAAGTTCTCTGGGCCAATGAAGGAAATAAAGCTGGTGAAGAGAGTGTTAATTTGTTCCTTAAGTCCATTGGGCTGAGGGAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E485556" ref_strand="-" ref_description="SGN-E485556 [cSTE-18-D15]">
      <seq>agaaagggatgggggtgtagtgcctacatggtctccctcaagtactaactattcagaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagctacgatagctacaaggtggagaagcaagtggctaatatagacatttggctcagcacatttagtacagctttcacctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcatctggattttcatcctcatctgtcgggcatccccatttacctatcataccatatatgtgtctctgctgtttagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgcctttttttcccttctcttttctgctacttacattttgatggcaataacgattatttgaagtcctggaactaattagatttttgtggatatcatagtttcaaactttgtttgactgatgtacatgtggtttgagcagcttcatcttatattttgttgtcggaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgagactagttctctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="2327" stop="633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2027" g_stop="1866" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1411" g_stop="945" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="627" r_length="465" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="635" polyA_stop="663"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E485556" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="0.920" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E485556" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2027" e_stop="1866"/>
          <exon e_start="1411" e_stop="945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTT</genome_strand>
        <mrna_strand>AGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTACTAACTATTCAGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGCTACGATAGCTACAAGGTGGAGAAGCAAGTGGCTAATATAGACATTTGGCTCAGCACATTTAGTACAGCTTTCACCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCATCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATCATACCATATATGTGTCTCTGCTGTTTAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCC-TTT-TTTTCCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATTTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTTTGTTTGACTGATGTACATGTGGTTTGAGCAGCTTCATCTTATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427207" ref_strand="-" ref_description="SGN-E427207 [STM-48-A5]">
      <seq>tgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagctacgatagctacaaggtggagaagcaagtggctaatatagacatttggctcagcacatttagtacagctttcacctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcatctggattttcatcctcatctgtcgggcatccccatttacctatcataccatatatgtgtctctgctgtttagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgcctttttttcccttctcttttctgctacttacattttgatggcaataacgattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactttgtttgactgatgtacatgtggtttgagcagcttcatcttatattttgttgtcggaaaaaaaaaaaaaaaaaaaaaaaaaaanccgagactagttctctctctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="2223" stop="633"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1923" g_stop="1866" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1411" g_stop="945" g_length="467"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="523" r_length="465" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="558"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E427207" ref_strand="-">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427207" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="1923" e_stop="1866"/>
          <exon e_start="1411" e_stop="945"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTT</genome_strand>
        <mrna_strand>TGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGCTACGATAGCTACAAGGTGGAGAAGCAAGTGGCTAATATAGACATTTGGCTCAGCACATTTAGTACAGCTTTCACCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCATCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATCATACCATATATGTGTCTCTGCTGTTTAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCC-TTT-TTTTCCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTTTGTTTGACTGATGTACATGTGGTTTGAGCAGCTTCATCTTATATTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E598024" ref_strand="+" ref_description="SGN-E598024 [73691]">
      <seq>ctacgatagctacaaggaggagaagcaagtggctaatatagacatttggctcagcacatttagtacagcattcaccactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcgtctggattttcatcctcatctgtcgggcatccccccccatttacctatcataccatatatgtgtctctgctgtatagtatagaagtttttcataaggccaaataagtgttagaaagtggttgcagtcctctgtcaagctcacacttgtgccttttttttccttctcttttctgctacttacattttgatggccataacaattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactctgtttgacggatgtacatgtggtttaagcagcttcatcttatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="1692" stop="648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1393" g_stop="948" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="447" r_length="447" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E598024" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E598024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1393" e_stop="948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCAT----CCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATT</genome_strand>
        <mrna_strand>CTACGATAGCTACAAGGAGGAGAAGCAAGTGGCTAATATAGACATTTGGCTCAGCACATTTAGTACAGCATTCA-CCACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCCCCCATTTACCTATCATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGTGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCC-TTT-TTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCCATAACAATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTTATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E611883" ref_strand="+" ref_description="SGN-E611883 [61639]">
      <seq>ctgatcagccatctttgtgtctatatctctaattgatcaggtggttcatctggattttcatcctcatctgtcgggcatccccatttacctatcataccatatatgtgtctctgctgtttagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgcctttttttcccttctcttttctgctacttacattttgatggcaataacgattatctgaagtcctggaactaattagatttttgtggatatcatagtttcaaactttgtttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="1593" stop="686"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1293" g_stop="973" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E611883" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>321</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E611883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1293" e_stop="973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGT</genome_strand>
        <mrna_strand>CTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCATCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATCATACCATATATGTGTCTCTGCTGTTTAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCC-TTT-TTTTCCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTTTGTTTGAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E259850" ref_strand="+" ref_description="SGN-E259850 [cLEG-51-L17]">
      <seq>gaagattcaacagcagaatcttccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtagtaactattcggaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagttacgatagcaacaaggcggagaagcaagtggctaatacagacatttggctcagcacatttagtacagcattcatctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcgtctggattttcatcctcatctgtcgggcatccccatttacctattataccatatatgtgtctctgctgtatagtatagaagtttttcataaggccaaataagtgttagaaagaggttgcagtcctctgtcaagctcacacttgtgccttttttttttccttctcttttctgctacttacattttgatggcaataacgattatctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="2362" stop="740"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2062" g_stop="1866" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1411" g_stop="1040" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="569" r_length="372" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E259850" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2062" e_stop="1866"/>
          <exon e_start="1411" e_stop="1040"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGA</genome_strand>
        <mrna_strand>GAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTTTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701922" ref_strand="+" ref_description="SGN-E701922 [FA17BC08]">
      <seq>caattatcctcttcctatagttgaaattgattcagcaaaagttagactagaacaagccctatcacaaatgtggtagaatgatgcagctgcaagagctgcgattgagaatggtatggaagaaggacatggtgactctgctgactccccaatagcatttcctcaggccatgcatatggaaatggaccatgaaccagtcaggaacaaccctgtaatagttactgttcgacgctatgaagatcaaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactccgtggacattaggaattcagttgtggaaagtagggcagaagttccaacagacatcaatgtagctgaagttcataggagagacacgcgtgaccaagccgtcatgcaaactgctcgaaccaatgctaccccacattttaattttgcggtaggtaggaggaattctgaagattcaacagcagaatcttccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtagtaactattcggaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagttacgatagcaacaaggcggagaagcaagtggctaatacagacatttggctcagcacatttagtacagcattcatctactctttctctcatagtcctgacctgatcagccatctttgtgtctatatctctaattgatcaggtggttcgtctggattttcatcctcatctgtcgggcatccccatttacctattataccatatatgtgtctctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="2819" stop="879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2519" g_stop="1866" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1411" g_stop="1179" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="887" r_length="233" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E701922" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2519" e_stop="1866"/>
          <exon e_start="1411" e_stop="1179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCT</genome_strand>
        <mrna_strand>CAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGTAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279955" ref_strand="+" ref_description="SGN-E279955 [cLER-8-H15]">
      <seq>tactgttcgacgctatgaagatcaaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactccgtggacattaggaattcagttgtggaaagtagggcagaagttccaacagacatcaatgtagctgaagttcataggagagacacgcgtgaccaagccgtcatgcaaactgctcgaaccaatgctaccccacattttaattttgcggtaggtaggaggaattctgaagattcaacagcagaatcttccagtagtactagagaaagggatgggggtgtagtgcctacatggtctccctcaagtagtaactattcggaccaatatgttggtgatgataatggtattgggaccagttcatcttacttgcaaaggcatccacaatctcaccagctaatgaactggcagcggctttctcaaacagggtgatcatttatgtggagttacgatagcaacaaggcggagaagcaagtggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="2603" stop="1061"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2303" g_stop="1866" g_length="438"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="438" r_length="438" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454">
            <donor d_prob="0.925" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1411" g_stop="1361" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="489" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E279955" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2303" e_stop="1866"/>
          <exon e_start="1411" e_stop="1361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGGGTAAGCTACGTGAGTTTCTTGAATAATCAGTAGAAGAAGACATTCATCCAAAAGAGATGAAAACTAGGAAATGGACAAATTTGAACATTCCAGTTTGAATATAAGCATTAGTGTTGCATCTAGCACAAACAAACATGACTACTCATGAATGGCACTAGTCACAGATTCACGGATAACATTTCTCATGTCCTTCATATTTCCTGTATGTCATGGTTAGCTGGTGAAAAAGCATTGCAAATTGCATAAAATTTTAGGCCAGTGAGAAGTCCTACATGAAAAGTCTGATTTAAACAAACGCAAGCAAATATGAATTGTGCTTCCTTTAAACTAACTGCAGACACATCTGTATACAAATATGGTGCATATTTCCATTTTTAAGGCCTTAGGCTCAAGACGACCACCTTGAAATTTCCAGGAAATGTCTTATCCTTTGGCTTGTTTAACTTGCTTACAGGTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGC</genome_strand>
        <mrna_strand>TACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E702204" ref_strand="+" ref_description="SGN-E702204 [FA18AD03]">
      <seq>gagtactcaagatacatgagttttaatcatccttatagccatgaaaggccccttcttggtcacctaaggtacttcccatgggtagtggatgaaggctactttaaggcatggagacaaggtagaacaggttatcctttggttgatgctggtatgagagagttatgggcaactggttggcttcatgatcgtatccgagtcgtggtatctagtttctttgtgaaggttctgcagcttccatggaggtgggggatgaagtatttttgggacacattgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtaccctacctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgaccctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatggatacaccatccatggaatgcaccagaatctgtgcttgaagctgctggcattgagctgggttccaattatcctcttcctatagttgaaattgattcagcaaaagttagactagaacaagccctatcacaaatgtggcagaatgatgcagctgcaagagctgcgattgagaatggtatggaagaaggacatggtgactctgctgactccccaatagcatttcctcaggccatgcatatggaaatggaccatgaaccagtcaggaacaaccctgtaatagttactgttcgacgctatgaagatcaaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactccgtggacattaggaattcagttgtggaaagtagggcagaagttccacagacatcaatgtagctgaagttcatangagagacacgcgtgaccaagccgtcatgcaaactgctcgaaacaatgctaccccacatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="3929" stop="1790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3629" g_stop="3261" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="369" r_length="369" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2662" g_stop="2090" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="941" r_length="572" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E702204" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>942</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3629" e_stop="3261"/>
          <exon e_start="2662" e_stop="2090"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAGGTATGTTAGGGTAATCTTTGATGAGAATCTCTTCTTTCAATTGGAATTTTTCATAACTTCATAGTTGAAATTCCTTTTCTTCTATTTCTCTAACATAGTAGAGTTGCTGGAACACCAATTATAGACTACTACCGTAATTTTTTTTAATAACTTTACGACTATTCTACACTTCGAATGGTTATAGCCTTCCATGTTGCGGTAAGTGTTATTTTCAGATTGTAAGTTAGTTTCCAGGCACTGACTTGCTAGTAGACATTGCATGAACATCTCATGGGCCTCAATCTTCTTACAGAAAGTGCTAAAGCTTAAGATGGAATGTGTGTGTGAATGCCTAATTGCAAATTCTGCTTCTTTTATATCCTGAGATATTACTTATTAGTACAGTGACTGTGAGCTTCTTTTGGTATTAAATTGATATGCGAGTCTTTTCAATACAAGAAACCCTTCCTTCTGTTTCTCTTGTTTTTTCATGTAAAACAAAAGTGAGGCTGCAGATTTTGCTATATATATCCCTTTTTCCGTTTCTGTTCTTGTTTCTTCATGTGAATTTTCTTGGTAAAGGCTGAATAGTTATTTGAACCTGTTCTCTTTCTGGCAGTTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTT</genome_strand>
        <mrna_strand>GAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCC-ACAGACATCAATGTAGCTGAAGTTCATANGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAAACAATGCTACCCCACATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427208" ref_strand="+" ref_description="SGN-E427208 [STM-48-A5]">
      <seq>tctctctctctccttagtccatttgggctgagggagtactcaagacctaaacaccattaatcatccttatagccatgaaaggcccctgctcccactcctaaggtacttcccatgggtagtggatgagggctactttaaggcatggagacaaggtagaacaggttatcctttggttgatgctggtatgagagagttatgggcaactggctggcttcatgatcgtatccgagtcgtggtttctagtttctttgtgaaggttctgcagcttccatggaggtggggaatgaagtatttttgggacacattgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtaccctacctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgaccctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatggatacaccacccgtggaatgcaccagaatctgtacttgaagctgctggcattgagctgggttccaattatcctcttccaatagttgaaattgattcagcaaaagttagactagaacaagccctatcacaaatgtggcagaatgatgcagctgcaagagctgcgattgagaatggaatggaagaaggacatggtgactctgctgactccccgatagcatttcctcaggccatgcatatggaaatggaccatgaaccagtcaggaacaaccccgtaatagttactgttcgacgctatgcagatcaaatggtgccaagcatgacatcatctttgttcagagctgaagatgaagagaactctgtggacattaggaattcagttgtggaaagtagggcagaagttccaacagacatcaatgtagctgaaggtcataggagagacacgcatgaccaagccgtcatgcaaactgctcgaaccaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="3957" stop="1803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3663" g_stop="3261" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2662" g_stop="2103" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="963" r_length="560" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E427208" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>963</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427208" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3663" e_stop="3261"/>
          <exon e_start="2662" e_stop="2103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTAATTTGTTCCTTAAGTCCATT-GGGCTGAGGGAGTACTCAAGA-TACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAGGTATGTTAGGGTAATCTTTGATGAGAATCTCTTCTTTCAATTGGAATTTTTCATAACTTCATAGTTGAAATTCCTTTTCTTCTATTTCTCTAACATAGTAGAGTTGCTGGAACACCAATTATAGACTACTACCGTAATTTTTTTTAATAACTTTACGACTATTCTACACTTCGAATGGTTATAGCCTTCCATGTTGCGGTAAGTGTTATTTTCAGATTGTAAGTTAGTTTCCAGGCACTGACTTGCTAGTAGACATTGCATGAACATCTCATGGGCCTCAATCTTCTTACAGAAAGTGCTAAAGCTTAAGATGGAATGTGTGTGTGAATGCCTAATTGCAAATTCTGCTTCTTTTATATCCTGAGATATTACTTATTAGTACAGTGACTGTGAGCTTCTTTTGGTATTAAATTGATATGCGAGTCTTTTCAATACAAGAAACCCTTCCTTCTGTTTCTCTTGTTTTTTCATGTAAAACAAAAGTGAGGCTGCAGATTTTGCTATATATATCCCTTTTTCCGTTTCTGTTCTTGTTTCTTCATGTGAATTTTCTTGGTAAAGGCTGAATAGTTATTTGAACCTGTTCTCTTTCTGGCAGTTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGC</genome_strand>
        <mrna_strand>TCTCTCTCT-CTCCTT-AGTCCATTTGGGCTGAGGGAGTACTCAAGACCTAAACACCATTAATCATCCTTATAGCCATGAAAGGCCCCTGCTCCCACTCCTAAGGTACTTCCCATGGGTAGTGGATGAGGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGCTGGCTTCATGATCGTATCCGAGTCGTGGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGAATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCACCCGTGGAATGCACCAGAATCTGTACTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCAATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGAATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCGATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCCGTAATAGTTACTGTTCGACGCTATGCAGATCAAATGGTGCCAAGCATGACATCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCTGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGGTCATAGGAGAGACACGCATGACCAAGCCGTCATGCAAACTGCTCGAACCAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704480" ref_strand="+" ref_description="SGN-E704480 [FA24BF08]">
      <seq>cacggtaaggtagaacaggttatcctttggttgatgctggtatgagagagttatgggcaactggttggcttcatgatcgtatccgagtcgtggtatctagtttctttgtgaaggttctgcagcttccatggaggtgggggatgaagtatttttgggacacattgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtaccctacctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgaccctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatggatacaccatccatggaatgcaccagaatctgtgcttgaagctgctggcattgagctgggttccaattatcctcttcctatagttgaaattgattcagcaaaagttagactagaacaagccctatcacaaatgtggcagaatgatgcagctgcaagagctgcgattgagaatggtatggaagaaggacatggtgactctgctgactccccaatagcatttcctcaggccatgcatatggaaatggaccatgaaccagtcaggaacaaccctgtaatagttactgttcgacgctatgaagatcaaatggtgccaagcatgacgtcatctttgttcagagctgaagatgaagagaactccgtggacattaggaattcagttgtggaaagtagggcaaaagttccaacagacatcaatgtagctgaagttcataggagagacacgcgtgaccaagccgtcatgcaaactgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="3814" stop="1814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3520" g_stop="3261" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="260" r_length="260" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2662" g_stop="2114" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="809" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E704480" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3520" e_stop="3261"/>
          <exon e_start="2662" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAGGTATGTTAGGGTAATCTTTGATGAGAATCTCTTCTTTCAATTGGAATTTTTCATAACTTCATAGTTGAAATTCCTTTTCTTCTATTTCTCTAACATAGTAGAGTTGCTGGAACACCAATTATAGACTACTACCGTAATTTTTTTTAATAACTTTACGACTATTCTACACTTCGAATGGTTATAGCCTTCCATGTTGCGGTAAGTGTTATTTTCAGATTGTAAGTTAGTTTCCAGGCACTGACTTGCTAGTAGACATTGCATGAACATCTCATGGGCCTCAATCTTCTTACAGAAAGTGCTAAAGCTTAAGATGGAATGTGTGTGTGAATGCCTAATTGCAAATTCTGCTTCTTTTATATCCTGAGATATTACTTATTAGTACAGTGACTGTGAGCTTCTTTTGGTATTAAATTGATATGCGAGTCTTTTCAATACAAGAAACCCTTCCTTCTGTTTCTCTTGTTTTTTCATGTAAAACAAAAGTGAGGCTGCAGATTTTGCTATATATATCCCTTTTTCCGTTTCTGTTCTTGTTTCTTCATGTGAATTTTCTTGGTAAAGGCTGAATAGTTATTTGAACCTGTTCTCTTTCTGGCAGTTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCT</genome_strand>
        <mrna_strand>CACGGTAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAAAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477919" ref_strand="+" ref_description="SGN-E477919 [cSTD-2-C14]">
      <seq>gagttatgggcaacaggctggcttcatgatcgtatccgagtcgtggtttctagtttctttgtgaaggttctgcagcttccatggaggtggggaatgaagtatttttgggacacattgttagatgcagatcttgagagtgatgctcttggttggcaatatatctctggtaccctacctgatggtcgtgagcttgatcggattgataatccacagtttgtgggatacaagtgtgaccctcatggggaatatgtccggcggtggcttcctgaacttgctaggctgcccaccgaatggatacaccacccgtggaatgcaccagaatctgtacttgaagctgctggcattgagctgggttccaattatcctcttccaatagttgaaattgattcagcaaaagttagactagaacaagccctatcagaaatgtggcagaatgatgcagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="3773" stop="2131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3473" g_stop="3261" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2662" g_stop="2431" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="445" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E477919" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E477919" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3473" e_stop="3261"/>
          <exon e_start="2662" e_stop="2431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAGGTATGTTAGGGTAATCTTTGATGAGAATCTCTTCTTTCAATTGGAATTTTTCATAACTTCATAGTTGAAATTCCTTTTCTTCTATTTCTCTAACATAGTAGAGTTGCTGGAACACCAATTATAGACTACTACCGTAATTTTTTTTAATAACTTTACGACTATTCTACACTTCGAATGGTTATAGCCTTCCATGTTGCGGTAAGTGTTATTTTCAGATTGTAAGTTAGTTTCCAGGCACTGACTTGCTAGTAGACATTGCATGAACATCTCATGGGCCTCAATCTTCTTACAGAAAGTGCTAAAGCTTAAGATGGAATGTGTGTGTGAATGCCTAATTGCAAATTCTGCTTCTTTTATATCCTGAGATATTACTTATTAGTACAGTGACTGTGAGCTTCTTTTGGTATTAAATTGATATGCGAGTCTTTTCAATACAAGAAACCCTTCCTTCTGTTTCTCTTGTTTTTTCATGTAAAACAAAAGTGAGGCTGCAGATTTTGCTATATATATCCCTTTTTCCGTTTCTGTTCTTGTTTCTTCATGTGAATTTTCTTGGTAAAGGCTGAATAGTTATTTGAACCTGTTCTCTTTCTGGCAGTTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTG</genome_strand>
        <mrna_strand>GAGTTATGGGCAACAGGCTGGCTTCATGATCGTATCCGAGTCGTGGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGAATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCACCCGTGGAATGCACCAGAATCTGTACTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCAATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCAGAAATGTGGCAGAATGATGCAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E442229" ref_strand="+" ref_description="SGN-E442229 [cSTA-32-K12]">
      <seq>ctcttcttcaatcatttgtatgatcctatttcacttgtgagagatcatcgcacaaaagaaatcttaacagctcaaggtatatctgtgtgttcctttaatgctgatttgctctatgaaccatgggaagttaatgacgatgaaggtcgcccgtacacaacattttctgctttttgggagaaatgccttagcatgccttatgatccagaagctccacttcttcctcctaaaaggattatatggggtgatgcatcaagatgcccttcagacaacttggtatttgaagatgaatcagagaaaggaagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="5683" stop="3605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5383" g_stop="5362" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614">
            <donor d_prob="0.980" d_score="0.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4747" g_stop="4529" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="241" r_length="219" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4528" i_stop="3968" i_length="561">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3967" g_stop="3905" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="304" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E442229" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E442229" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5383" e_stop="5362"/>
          <exon e_start="4747" e_stop="4529"/>
          <exon e_start="3967" e_stop="3905"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTCCTTTTTTTGGCTTTCCTTTGTAATCATTTTGTTTGATTTGATTATTCTTAATGTTGTTTCAAAAGTTATTAGTACTATATTGTTGGGATGGCTTAATTGGGATTGGTGCTTCCTATATGTCCTTTTAAGAATAAGATATTGAGTTGTCTTCTGGTAAACATAATAAATTATTAGCATGTGTCTTCCTCATATAACTAAAGAATTTTAAGTGCAATACTTTTTGCTATGCTCAATCCTCAGTGCTTGTAGCATTCTCTGGCTACTAATTTGTTTAGTGCCTGAATTAGAACTACAGTAATCTGGATTTGTTGTACTAAACATATTCCATATCCTTATTATTTGATTAATAGAAGCAGAAAGGGTGTTGCTTGACATTTGATCTGATCATGGTTGAATGGATAATTGCTAATAGATATGCATGGCTTTTATTTTAAGCATCTCTTTACAGTACAAGGATTTATAAGATGCATAGTTTTGCTCAGCCAATTTCATCCACTACCTTATCCTGACCAACACCTTTGACTTCTTTGGCTTTAGATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCCAAAAGGATTATATCTGGTTTGTTCTCATCTGAGCTTCTCCATATCTTGTTGGCTTTCTGGATAAATTTCTATTATTTTTTGTACATATTTTTGTAACATAAGGTGCTTAGGGTAGAAGGTTAGTAGGGCATGAAGGGTCTTTCAGAAACAACCTCTCTACCTCCACAATGTAGGGGTAATATCCGCGTATATTCTACCGCCGCTTGTAGGATTATACTGGGTATGTTGTTGTCGTGCTTGGCTTAGTGTTACGTTCCACCAATGATGCACACAAATTAGGAGATCTCCCTCCAGGTAATAGATATATTAATTGTCAGATAAAAATAATGTCATTGCACCGTAATGAACGTGTTGCTACACTTTAAGCTCGGAGATCACTACATGGTGTATAATGTGAATGTTGCAGGTATTCAAGTCCTTCAAAAGTGGAAAGGTGATAATGAACATTTAGATGTTTGAGCTGTCACTAACAAGCTAAGGGCTAAAACAAATTCCTAGGATGGTGTTAATGTACTTATAGGAGCACTGGTTTAGATTTTAATTTAGTTTTTACATGGATTCATGTGCAAACTTTCAGGTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCA</genome_strand>
        <mrna_strand>CTCTTCTTCAATCATTTGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCTGTGTGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTACACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCTAAAAGGATTATATGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408362" ref_strand="+" ref_description="SGN-E408362 [PPI-10-L8]">
      <seq>cctcgtgccatatacttctgtccaagaagactcaataacatggtgtttacatagaaagagagaaaaatagagagagagaaaaagagtagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttaggagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtatcaagatggtggcttaagcagagcttggcttatcttaattcatctttgaagagtcttggaacttcccttattacaaagagatctaatgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatgatcctatttcacttgtgagagatcatcgcacaaaagaaatcttaacagctcaaggtatatctgtacgttcctttaatgctgatttgctctatgaaccatgggaagttaatgatgatgaaggtcgcccgttcacaacattttctgctttttgggagaaatgccttagcatgccttatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6076" stop="4269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5783" g_stop="5362" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="424" r_length="424" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4747" g_stop="4569" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="603" r_length="179" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E408362" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E408362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5783" e_stop="5362"/>
          <exon e_start="4747" e_stop="4569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATA----GAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTCCTTTTTTTGGCTTTCCTTTGTAATCATTTTGTTTGATTTGATTATTCTTAATGTTGTTTCAAAAGTTATTAGTACTATATTGTTGGGATGGCTTAATTGGGATTGGTGCTTCCTATATGTCCTTTTAAGAATAAGATATTGAGTTGTCTTCTGGTAAACATAATAAATTATTAGCATGTGTCTTCCTCATATAACTAAAGAATTTTAAGTGCAATACTTTTTGCTATGCTCAATCCTCAGTGCTTGTAGCATTCTCTGGCTACTAATTTGTTTAGTGCCTGAATTAGAACTACAGTAATCTGGATTTGTTGTACTAAACATATTCCATATCCTTATTATTTGATTAATAGAAGCAGAAAGGGTGTTGCTTGACATTTGATCTGATCATGGTTGAATGGATAATTGCTAATAGATATGCATGGCTTTTATTTTAAGCATCTCTTTACAGTACAAGGATTTATAAGATGCATAGTTTTGCTCAGCCAATTTCATCCACTACCTTATCCTGACCAACACCTTTGACTTCTTTGGCTTTAGATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGAT</genome_strand>
        <mrna_strand>CCTCGTGCC-ATATACTTCTGTCCAAGA-AGACTCAATAACATGGTGTTTACATAGAAAGAGAGAAAAATAGAGAGAGAGAAAAAGAGTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGGAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTATCAAGATGGTGGCTTAAGCAGAGCTTGGCTTATCTTAATTCATCTTTGAAGAGTCTTGGAACTTCCCTTATTACAAAGAGATCTAATGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCTGTACGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGATGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577290" ref_strand="+" ref_description="SGN-E577290 [34428]">
      <seq>gttaaagttaggttctttactagaattttgcctaaaaaaaatcatctttatctcctcagtgaaagctacagggaacagtcaaagtatagataagattaaccccaatatacttctgtccaagaaagactcaataacatggtgtttacatagaaagagagaaaaatagagagagaaaaagagtagtctttggtgttgtggaaggaagatgtcaggtggtggttgtagcatagtatggtttaggagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtatcaagatggtggcttaagcagagcttggcttatcttaattcatctttgaagagtcttggaacttcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatgatcctatttcacttgtgagagatcatcgcacaaaagaaatcttaacagctcaaggtatatctgtgtgttcctttaatgctgatttgctctatgaaccatgggaagttaatgacgatgaaggtccgccgtacacaacattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6185" stop="4308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5885" g_stop="5362" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="0.950"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4747" g_stop="4608" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="658" r_length="140" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E577290" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577290" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5885" e_stop="5362"/>
          <exon e_start="4747" e_stop="4608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAAT--AGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTCCTTTTTTTGGCTTTCCTTTGTAATCATTTTGTTTGATTTGATTATTCTTAATGTTGTTTCAAAAGTTATTAGTACTATATTGTTGGGATGGCTTAATTGGGATTGGTGCTTCCTATATGTCCTTTTAAGAATAAGATATTGAGTTGTCTTCTGGTAAACATAATAAATTATTAGCATGTGTCTTCCTCATATAACTAAAGAATTTTAAGTGCAATACTTTTTGCTATGCTCAATCCTCAGTGCTTGTAGCATTCTCTGGCTACTAATTTGTTTAGTGCCTGAATTAGAACTACAGTAATCTGGATTTGTTGTACTAAACATATTCCATATCCTTATTATTTGATTAATAGAAGCAGAAAGGGTGTTGCTTGACATTTGATCTGATCATGGTTGAATGGATAATTGCTAATAGATATGCATGGCTTTTATTTTAAGCATCTCTTTACAGTACAAGGATTTATAAGATGCATAGTTTTGCTCAGCCAATTTCATCCACTACCTTATCCTGACCAACACCTTTGACTTCTTTGGCTTTAGATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTT</genome_strand>
        <mrna_strand>GTTAAAGTTAGGTTCTTTACTAGAATTTTGCCTAAAAAAA--ATC------ATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCCAAGAAAGACTCAATAACATGGTGTTTACATAGAAAGAGAGAAAAATAGAGAGAGAAAAAGAGTAGTCTTTGGTGTTGTGGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGGAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTATCAAGATGGTGGCTTAAGCAGAGCTTGGCTTATCTTAATTCATCTTTGAAGAGTCTTGGAACTTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCTGTGTGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCCGCCGTACACAACATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E312327" ref_strand="+" ref_description="SGN-E312327 [cTOA-5-I5]">
      <seq>ttctctagagaggtttgtttttttgggtggacaatgcctatagtaacttcacaagaatagcatctcatcattcatcaaagaataacatttggggtttgttaaagttaggttctttactagaatttgcctaaaaaaaatcatctttgtaatctttatctcctcagtgaaagctacagggaacagtcaaagtatagataagattaaccccaatatacttctgtctaagaaagactcaataacatggtgtttacatagaaagggagaaaaatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatgatcctatttcacttgtgagagatcatcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6282" stop="4418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5982" g_stop="5362" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.820" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4747" g_stop="4718" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="651" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E312327" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5982" e_stop="5362"/>
          <exon e_start="4747" e_stop="4718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTCCTTTTTTTGGCTTTCCTTTGTAATCATTTTGTTTGATTTGATTATTCTTAATGTTGTTTCAAAAGTTATTAGTACTATATTGTTGGGATGGCTTAATTGGGATTGGTGCTTCCTATATGTCCTTTTAAGAATAAGATATTGAGTTGTCTTCTGGTAAACATAATAAATTATTAGCATGTGTCTTCCTCATATAACTAAAGAATTTTAAGTGCAATACTTTTTGCTATGCTCAATCCTCAGTGCTTGTAGCATTCTCTGGCTACTAATTTGTTTAGTGCCTGAATTAGAACTACAGTAATCTGGATTTGTTGTACTAAACATATTCCATATCCTTATTATTTGATTAATAGAAGCAGAAAGGGTGTTGCTTGACATTTGATCTGATCATGGTTGAATGGATAATTGCTAATAGATATGCATGGCTTTTATTTTAAGCATCTCTTTACAGTACAAGGATTTATAAGATGCATAGTTTTGCTCAGCCAATTTCATCCACTACCTTATCCTGACCAACACCTTTGACTTCTTTGGCTTTAGATCCTATTTCACTTGTGAGAGATCATCGCA</genome_strand>
        <mrna_strand>TTCTCTAGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGAAAGGGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTATTTCACTTGTGAGAGATCATCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374086" ref_strand="+" ref_description="SGN-E374086 [TUS-33-B15](-)">
      <seq>aaatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatggttagtacttgtttccatttttttctgtggttttcttgcttctttaaataaaagatagagcaccactgttttacttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6017" stop="4985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5717" g_stop="5285" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="443"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E374086" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5717" e_stop="5285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</genome_strand>
        <mrna_strand>AAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746755" ref_strand="+" ref_description="SGN-E746755 [GI|47104527]">
      <seq>aaatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatggttagtacttgtttccatttttttctgtggttttcttgcttctttaaataaaagatagagcaccactgttttacttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6017" stop="4985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5717" g_stop="5285" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="434" polyA_stop="448"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E746755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5717" e_stop="5285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</genome_strand>
        <mrna_strand>AAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300528" ref_strand="+" ref_description="SGN-E300528 [cLET-45-A15]">
      <seq>aatatagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatggttagtacttgtttccatttttttctgcggttttcttgcttctttaaataaaagatagagcaccactgttttacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6016" stop="4985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5716" g_stop="5285" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="443"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E300528" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5716" e_stop="5285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</genome_strand>
        <mrna_strand>AATATAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGCGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374087" ref_strand="+" ref_description="SGN-E374087 [TUS-33-B15]">
      <seq>aatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttagaagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtttcaagatggtggcttaagcagagtttggctcatcttgattcatctttgaagagtcttggaacctcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgttaaatctactggtgctactcagctcttcttcaatcatttgtatggttagtacttgtttccatttttttctgtggttttcttgcttctttaaataaaagatagagcaccactgttttacttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6016" stop="4985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5716" g_stop="5285" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="432" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="433" polyA_stop="443"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E374087" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5716" e_stop="5285"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</genome_strand>
        <mrna_strand>AATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407662" ref_strand="+" ref_description="SGN-E407662 [PPI-8-G21]">
      <seq>gttctcatgttaccccaccaccataaccaatcacactcaatctcactttctaccccctctttctgtagaggggtttgtttttttgggtggccaatgcctatagtaacttcagaagaatagcatctcatcattcatccaagaataacatttggggtttgttaaagttaggttctttactagaattttgcctaaaaaaaatcatctttatctcctcagtgaaagctacagggaacagtcaaagtatagataagattaaccccaatatacttctgtccaagaaagactcaataacatggtgtttacatagaaagagagaaaaatagagagagaaaaagagtagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagtatggtttaggagggatctgagagtggaagataaccctgctttggctgctggagttagagcaggggcagttattgctgtgtttatttatgctcctgaagaagaagggcattattatcctggtagagtatcaagatggtggcttaagcagagcttggcttattttaattcatctttgaagagtcttggaacttcccttattacaaagagatctactgatagtatttcttctcttcttgaagttgntaaatctactggtgctactcagctcttcttcatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6342" stop="5070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6042" g_stop="5375" g_length="668"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="662" r_length="662" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E407662" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E407662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6042" e_stop="5375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTCATGTTACCCCACCACCATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAA-TTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAAT--AGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTC</genome_strand>
        <mrna_strand>GTTCTCATGTTACCCCACCACCATAACCAATCACACTCAATCTCACTTTCTACCCCCTCTTTCTGTAGAGGGGTTTGTTTTTTTGGGTGGCCAATGCCTATAGTAACTTCAGAAGAATAGCATCTCATCATTCATCCAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTTGCCT-AAAAAAA--ATC------ATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCCAAGAAAGACTCAATAACATGGTGTTTACATAGAAAGAGAGAAAAATAGAGAGAGAAAAAGAGTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGGAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTATCAAGATGGTGGCTTAAGCAGAGCTTGGCTTATTTTAATTCATCTTTGAAGAGTCTTGGAACTTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGNTAAATCTACTGGTGCTACTCAGCTCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E337477" ref_strand="+" ref_description="SGN-E337477 [cTOE-11-H11]">
      <seq>atagcatctcatcattcatcaaagaataacatttggggtttgttaaagttaggttctttactagaatttgcctaaaaaaaatcatctttgtaatctttatctcctcagtgaaagctacagggaacagtcaaagtatagataagattaaccccaatatacttctgtctaagaaagactcaataacatggtgtttacataaaaagggagaaaaatagagagaaaaagactagtctttggtgttgttgaaggaagatgtcaggtggtggttgtagcatagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="6226" stop="5348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5926" g_stop="5648" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E337477" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337477" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5926" e_stop="5648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTA</genome_strand>
        <mrna_strand>ATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAAAAAGGGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E473642" ref_strand="+" ref_description="SGN-E473642 [cSTB-32-D16]">
      <seq>ttttcatcttttttctctcctcactcattattgttcaaaaaacgagagataaagagcctatgtgctattgatttcttcatcattagcaagagaaaaaagaattgaattaaactgaattttagttttctgagataatggccagcaccttttgctttcttgttgtagcaacactcattatgtgcatattcattgcaaaaacacctttagcagtgtcactgaatgtggagaggaagttgatatcagcaacaccagtagagtttcttgcaaatcctccggtgccagcggcgtctccattctcagagatatcaccagatattgcacctctcttgccttcttctggtggagtggtgcctccagtttcttcaatgccaactattccttcgaatccgagtgaaaatccagatgatgtgatgtaccctattggccctgattctgctgctcttgcaccttctgctttttcacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="30240" stop="29179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29941" g_stop="29479" g_length="463"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E473642" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>463</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E473642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29941" e_stop="29479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTC-TCCTTTTTCTCTCCTTACTCATTATTGTTCAAAAAAAGAGAGATAAAGAGCCTATGTGCTATTGATTTCTTCATCATTAGCAAGAGAAAAAGGAATTGAATTAAACTGAATTTTAGTTTTCTGAGATAATGGCCAGCACCTTTTGCTTTCTTGTTGTAGCAACACTCATTATGTGTATATTCATTGCAAAAACACCTCTAGCAGTGTCACTGAATGTGGAGAGGAAGTTGATATCAGCAACACCAGTAGAGTTTCTTGCAAATCCTCCGGTGCCAGCGGCATCTCCATTCTCAGAGATATCTCCAGATATTGCACCTCTCTTGCCTTCTTCTGGTGGTGTGGTGCCTCCAGTTTCTTCAATGCCAACTATTCCTTCGAATCCTAGTAAAAATCCAGATGATGTGATGTACCCTATTGGCCCTGATACTGCTGCTCTTGGACCTTCTGCTTTTTCACCT</genome_strand>
        <mrna_strand>TTTTCATCTTTTTTCTCTCCTCACTCATTATTGTTCAAAAAACGAGAGATAAAGAGCCTATGTGCTATTGATTTCTTCATCATTAGCAAGAGAAAAAAGAATTGAATTAAACTGAATTTTAGTTTTCTGAGATAATGGCCAGCACCTTTTGCTTTCTTGTTGTAGCAACACTCATTATGTGCATATTCATTGCAAAAACACCTTTAGCAGTGTCACTGAATGTGGAGAGGAAGTTGATATCAGCAACACCAGTAGAGTTTCTTGCAAATCCTCCGGTGCCAGCGGCGTCTCCATTCTCAGAGATATCACCAGATATTGCACCTCTCTTGCCTTCTTCTGGTGGAGTGGTGCCTCCAGTTTCTTCAATGCCAACTATTCCTTCGAATCCGAGTGAAAATCCAGATGATGTGATGTACCCTATTGGCCCTGATTCTGCTGCTCTTGCACCTTCTGCTTTTTCACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E604306" ref_strand="+" ref_description="SGN-E604306 [74440]">
      <seq>catttattggtgtcttatctgcctgtgatcatttggggggtttactagaagagggaaaaaggtggtttaattcaatgaattacgattatcacgttgatccaggggattgaacattactcatgtatggtagatctttatgcaagagcaggatgtcttgaagaagctgtgaacctcatcgaaaagatgccatttgaggcagattcaagcatgtggttatccattttgagaggatgtgtagctcatggtaacaagatactaggacagctcgtggcccaacgcattatagagcttgatcctgagaattcaggtgctttcgtgcagttatcaaacatatttgctacttctgaggactgggaaagatctgctttggtcaggaggctgatgatagaaaagaaaatccataaaagttctggtcgaagctggagtgatatgtaagacaaagtgcagtacaggtctccggataattattgcagcagtgggagaagaggttggtatagtgatgttgttcatggggatgagaggggctggtctgacctcctatagtagcgataactcaagtaattattcttcctgcgcccttcaaaggatgctcacactcaagggatctttgatgcatgttctgtcatggctaaaaacgtgaatgaatcaggtatttgtgccgtggctgacctcagaggagaactattacttggctggaaatatttttttcctgggagaatgaagggggtttccccttaagaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="34165" stop="32092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33865" g_stop="33383" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33382" i_stop="32643" i_length="740">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32642" g_stop="32391" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="488" r_stop="743" r_length="256" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E604306" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>735</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E604306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33865" e_stop="33383"/>
          <exon e_start="32642" e_stop="32391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTATTGGTGTCTTATCTGCCTGTGATCA-TT--GTGGTTTACTAGAAGAGGGAAAAAGGTGGTTTTATTCAATGAATTACGATTACCACATTGATCCA-GGAATTGAACATTACTCCTGTATGGTAGATCTTTATGCAAGAGCTGGATGTCTCGAAGAAGCTGTGAACCTCATCAAAAAGATGCCATTTGAGGCAGATTCAAGCATGTGGTTATCCATTTTGAGAGGATGTGTAGCTCATGGTAACAAGATACTAGGACAGCTCGTGGCTCAACGCATTATAGAGCTTGATCCTGAGAATTCAGGTGCTTTCGTGCAGTTATCAAACATATTTGCTACTTCTGAGGACTGGGAAAGATCTGCTTTAGTCAGGAGGCTGATGATAGAAAAGAAAATCCATAAGAGTTCTGGTCGAAGCTGGAGTGATATGTAAGACAAAGTGCAGTACAGGTCTGCGGATGATTATTGCAGCAGTTGGAGAAGAGGTTAATTTTATTTTTAGCCACCCACTTCAATAGCTTTTGAAGCTATTAATTGTTTTTTTTTCCGGCTCATTCATGTTCTTGTAACAATGGTTTTCTTCTAATCTTGTTGCATTATTTTGTGAGCACAGCCCAGTTGAAGTGCTTTGTGAGAATTAGCAGTTTGTTTCTCAGATGCCTTGATTTAGGGCAGAAAAGATATCTTTGCTTATCTGATTAGTATCTTTTCATAAATGGTGATCATGTTACTATCTTTCTATAAAGTAGTGATCAGGCATTGTTATCTGCATTCAGGTTCTTGGAATTGTGTGGATGCAGAAATGAAGAGTTCTTAGCTGTTCTGGTCACTAAGGTAACAATGCGTGAGTTAAAGAAATTTGCTGGGAACTCTACACTATACTTTAGGCATCCGTCCTCTTCAGTCATGCACATCGTTTGGCTGTTCTTAACAGTGTTTTCTCTGAAAATTCTTGGTGTTTCTATCTGTCATTCATCAATTTTATTTGCCAGGATTTAATTCTAACACTGTCCGTGATATCCAAGGTGCTATTTCACATTGTCTAGGACAGAATTTTGCAAAATGTTTGGATATAAATTTTGAAAATGAGGAGAGAAGGCTATGGTCTGGCAGAACTCATGGGCTTATAAGACCAGAGCAATACAAATTCAAAGCTATTTAGAAACTGTCGTTGTAGTTTCCACTTTGTTATGCAAGCTAACTCTTTTTACTGATGTTGTGGCAGGTTGGTATAGTGATGTTGTTCATGGGGATGAGGGGGTCTGGTCTG-CCTCCTATAGTAGCGATAACTCAAGTAATTATTCTTCCTACGCCCTTCAAAGGATGCTCACACTCAAGGGATCTTTGAAGCATGTTCTGTCATGGCTGAAAACGTGAATGAATCAGGTATTTGTGCCGTGGCCGACCTCAGA-GAGAACTATTACCTGGCTGGAAATA-TTTTTT-CTGGGAGAATGAAGGGGGTTTCCCCTTAGGATTG</genome_strand>
        <mrna_strand>CATTTATTGGTGTCTTATCTGCCTGTGATCATTTGGGGGGTTTACTAGAAGAGGGAAAAAGGTGGTTTAATTCAATGAATTACGATTATCACGTTGATCCAGGGGATTGAACATTACTCATGTATGGTAGATCTTTATGCAAGAGCAGGATGTCTTGAAGAAGCTGTGAACCTCATCGAAAAGATGCCATTTGAGGCAGATTCAAGCATGTGGTTATCCATTTTGAGAGGATGTGTAGCTCATGGTAACAAGATACTAGGACAGCTCGTGGCCCAACGCATTATAGAGCTTGATCCTGAGAATTCAGGTGCTTTCGTGCAGTTATCAAACATATTTGCTACTTCTGAGGACTGGGAAAGATCTGCTTTGGTCAGGAGGCTGATGATAGAAAAGAAAATCCATAAAAGTTCTGGTCGAAGCTGGAGTGATATGTAAGACAAAGTGCAGTACAGGTCTCCGGATAATTATTGCAGCAGTGGGAGAAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTATAGTGATGTTGTTCATGGGGATGAGAGGGGCTGGTCTGACCTCCTATAGTAGCGATAACTCAAGTAATTATTCTTCCTGCGCCCTTCAAAGGATGCTCACACTCAAGGGATCTTTGATGCATGTTCTGTCATGGCTAAAAACGTGAATGAATCAGGTATTTGTGCCGTGGCTGACCTCAGAGGAGAACTATTACTTGGCTGGAAATATTTTTTTCCTGGGAGAATGAAGGGGGTTTCCCCTTAAGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475357" ref_strand="+" ref_description="SGN-E475357 [cSTB-38-D14]">
      <seq>gaagctttgaatctattccacgaaatgagaagtgcgggtgtttcgccaacaaatatcacatttattggtgtcttatctgcctgtgatcattgtggtttactagaagagggaaaaaggtggttttattcaatgaattacgattaccacattgatccagggattgaacattactcctgtatggtagatctttatgcacgagcaggatgtcttgaagaagctgtgaatctcatcgaaaagatgccatttgatgcagattcaagcatgtggttatccattttgagaggatgtgtagctcatggtaacaagatactaggacagctcgtggcccaacacattatagagcttgatcctgagaattcaggtgctttcgtgcagttatcaaacatatttgctacttctgaggactgggaaagatctgctttggtcaggaggctgatggtagaaaagaaaatccataagagttctggtcgaagctggagtgatatgtaagacaaagtgcagtacaggtctccggataattattgcagcagtgggagaagaggttaactttattttttagccactcacttcaatatcttttgaagctattaattgttttcttttttccggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="34223" stop="33017"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33923" g_stop="33317" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E475357" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E475357" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33923" e_stop="33317"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGCTTTGAATCTATTCCACGAAATGAGAAGTGTGGGTGTTTCGCCAACAAATATCACATTTATTGGTGTCTTATCTGCCTGTGATCATTGTGGTTTACTAGAAGAGGGAAAAAGGTGGTTTTATTCAATGAATTACGATTACCACATTGATCCAGGAATTGAACATTACTCCTGTATGGTAGATCTTTATGCAAGAGCTGGATGTCTCGAAGAAGCTGTGAACCTCATCAAAAAGATGCCATTTGAGGCAGATTCAAGCATGTGGTTATCCATTTTGAGAGGATGTGTAGCTCATGGTAACAAGATACTAGGACAGCTCGTGGCTCAACGCATTATAGAGCTTGATCCTGAGAATTCAGGTGCTTTCGTGCAGTTATCAAACATATTTGCTACTTCTGAGGACTGGGAAAGATCTGCTTTAGTCAGGAGGCTGATGATAGAAAAGAAAATCCATAAGAGTTCTGGTCGAAGCTGGAGTGATATGTAAGACAAAGTGCAGTACAGGTCTGCGGATGATTATTGCAGCAGTTGGAGAAGAGGTTAATTTTA-TTTTTAGCCACCCACTTCAATAGCTTTTGAAGCTATTAATTG-TTT-TTTTTTCCGGC</genome_strand>
        <mrna_strand>GAAGCTTTGAATCTATTCCACGAAATGAGAAGTGCGGGTGTTTCGCCAACAAATATCACATTTATTGGTGTCTTATCTGCCTGTGATCATTGTGGTTTACTAGAAGAGGGAAAAAGGTGGTTTTATTCAATGAATTACGATTACCACATTGATCCAGGGATTGAACATTACTCCTGTATGGTAGATCTTTATGCACGAGCAGGATGTCTTGAAGAAGCTGTGAATCTCATCGAAAAGATGCCATTTGATGCAGATTCAAGCATGTGGTTATCCATTTTGAGAGGATGTGTAGCTCATGGTAACAAGATACTAGGACAGCTCGTGGCCCAACACATTATAGAGCTTGATCCTGAGAATTCAGGTGCTTTCGTGCAGTTATCAAACATATTTGCTACTTCTGAGGACTGGGAAAGATCTGCTTTGGTCAGGAGGCTGATGGTAGAAAAGAAAATCCATAAGAGTTCTGGTCGAAGCTGGAGTGATATGTAAGACAAAGTGCAGTACAGGTCTCCGGATAATTATTGCAGCAGTGGGAGAAGAGGTTAACTTTATTTTTTAGCCACTCACTTCAATATCTTTTGAAGCTATTAATTGTTTTCTTTTTTCCGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722638" ref_strand="+" ref_description="SGN-E722638 [FC17DE04]">
      <seq>aatcggccgaattggagaagtaagagagaggactgaaaatacaatttctccggcgccgtctaaggcctataaaatcggaagttcatcgcattagcaaattcatcccaacttcaaaatgaggttgttaactcacaacatgttatcatccaacatcaagggagtcgcaaatggattcccgttgaagatcgaggttgtgaaagtggtagagaaagaggttgattttaatatcgattttctcaagaacatgttccataaggttgaatggaaggcactggcggaagcttctagaaccatgggttacgctgaactgcctgaaaatgttgatgctgctatggtaaactcaaatgattttcttcataagtttcatcatgcccttctcgagcttcatcttgaaaagggtgccttggtttgtccagagactggccggaaatttcctgtcaataaaggcattcccaatatgcttcttcatgaagacaaggtctgattagttttttttttctttttttgggaattgatatgttttggtttgaaaatggggattagggttcttgattatagggtttaaggggtttgttatgatataccattttgaattgtaatgctattattggaaaacactgtcgatattatggagtaattaccaaaacttctttgttgcnnaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36515" stop="37883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36814" g_stop="36928" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37581" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="656" r_length="541" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="719"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E722638" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.912" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36814" e_stop="36928"/>
          <exon e_start="37041" e_stop="37581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTAGAGCAGCTCGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTT</genome_strand>
        <mrna_strand>AATCGGCCGAATTGGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAA................................................................................................................ATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAAATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAAAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACAAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGAATTGATATGTTTTGGTTTGAAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAAACACTGTCGATATTATGGAGTAATTACCAAAACTTCTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E606414" ref_strand="+" ref_description="SGN-E606414 [22357]">
      <seq>gagcaactcgagaagtaagagagacgactgaaaatacaagttctccggcgccgtccaaggcctataaatcggaagttcctcgcattagcaatttctttccaacttccaaatgaggctgttaactcacaatatgttatcatccaacatcaagggagtcgcaaatggatttccgttgaagatcgaggttgtgaaagtggtagagaaggaggttgattttaatatcgattttctcaagaacatgttccataaagttgaatggaaggcactggcggaagcttctacaaccatgggttacgctgagctgcctgagaatgttgatgctgctatgctcgactcagatgattttcttcataagtttcatcatgcccttcttgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcagtaaaggcattcccaatatgcttcttcatgaagacgaggtctgattagtttttttttttcttttctgggtattgatgtgttccggtttggaaatggggattagggttcttgataatagggtttaaggggtttgatatgatataccattttgattgtaatgctattattggaagacattgtcgatattaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36519" stop="37856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36819" g_stop="36928" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37556" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="624" r_length="515" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E606414" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E606414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36819" e_stop="36928"/>
          <exon e_start="37041" e_stop="37556"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGCTCGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATG</genome_strand>
        <mrna_strand>GAGCAACTCGAGAAGTAAGAGAGACGACTGAAAATACAAGTTCTCCGGCGCCGTCCAAGGCCTAT-AAATCGGAAGTTCCTCGCATTAGCAATTTCTTTCCAACTTCCAA................................................................................................................ATGAGGCTGTTAACTCACAATATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTTCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAGGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAAGTTGAATGGAAGGCACTGGCGGAAGCTTCTACAACCATGGGTTACGCTGAGCTGCCTGAGAATGTTGATGCTGCTATGCTCGACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTTGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAGTAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTTCTTTTCTGGGTATTGATGTGTTCCGGTTTGGAAATGGGGATTAGGGTTCTTGATAATAGGGTTTAAGGGGTTTGATATGATATACCATTTTG-ATTGTAATGCTATTATTGGAAGACATTGTCGATATTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E477955" ref_strand="+" ref_description="SGN-E477955 [cSTD-2-M20]">
      <seq>caactcgagaagtaagagagacgactgaaaatacaagttctccggcgccgtccaaggcctataaatcggaagttcctcgcattagcaaattctttccaacttccaaatgaggctgttaactcacaatatgttatcatccaacatcaagggagtcgcaaatggatttccgttgaagatcgaggttgtgaaagtggtagagaaggaggttgaatttaatatcgattttctcaagaacatgttccataaagttgaatggaaggcactggcggaagcttctacaaccatgggttacgccgaactgcctgaaaatgttgatgctgctatgctcgactcagatgatttccttcataagtttcatcatgcccttcttgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcagtaaaggcattcccaatatgcttcttcatgaagacgaggtctgattagttttttttcttcttttttgggtattgatgtgttttggtttggaaatggggattagggttcttgataatagtgttaagggggtttgttctgatataccattttgattgtaatgctattattggaagacattgtcgatactaaggagtaattactagaacttctttgaccacaccactatatctgagattgtagttttgtattgaaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36522" stop="37929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36822" g_stop="36928" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.916"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37636" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="697" r_length="591" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E477955" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E477955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36822" e_stop="36928"/>
          <exon e_start="37041" e_stop="37636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTTGCACCACACTGCTATATCTGAGATTGTAGTTTTGTATCGAAATTACAACCTTCAA</genome_strand>
        <mrna_strand>CAACTCGAGAAGTAAGAGAGACGACTGAAAATACAAGTTCTCCGGCGCCGTCCAAGGCCTAT-AAATCGGAAGTTCCTCGCATTAGCAAATTCTTTCCAACTTCCAA................................................................................................................ATGAGGCTGTTAACTCACAATATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTTCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAGGAGGTTGAATTTAATATCGATTTTCTCAAGAACATGTTCCATAAAGTTGAATGGAAGGCACTGGCGGAAGCTTCTACAACCATGGGTTACGCCGAACTGCCTGAAAATGTTGATGCTGCTATGCTCGACTCAGATGATTTCCTTCATAAGTTTCATCATGCCCTTCTTGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAGTAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTCTTCTTTTTTGGGTATTGATGTGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATAATAGTGTTAAGGGGGTTTGTTCTGATATACCATTTTG-ATTGTAATGCTATTATTGGAAGACATTGTCGATACTAAGGAGTAATTACTAGAACTTC--T-TTG-ACCACACCACTATATCTGAGATTGTAGTTTTGTATTGAAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E615747" ref_strand="+" ref_description="SGN-E615747 [65549]">
      <seq>cgagaagtaagagagacgactgaaaatacaagttctccggcgccgtccaaggcctataaatcggaagttcctcgcattagcaaattctttccaacttccaaatgaggctgttaactcacaatatgttatcatccaacatcaagggagtcgcaaatggatttccgttgaagatcgaggttgtgaaagtggtagagaaggaggttgaatttaatatcgattttctcaagaacatgttccataaagttgaatggaaggcactggcggaagcttctacaaccatgggttacgccgaactgcctgaaaatgttgatgctgctatgctcgactcaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36527" stop="37570"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36827" g_stop="36928" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37270" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="331" r_length="230" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E615747" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>332</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E615747" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36827" e_stop="36928"/>
          <exon e_start="37041" e_stop="37270"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGA</genome_strand>
        <mrna_strand>CGAGAAGTAAGAGAGACGACTGAAAATACAAGTTCTCCGGCGCCGTCCAAGGCCTAT-AAATCGGAAGTTCCTCGCATTAGCAAATTCTTTCCAACTTCCAA................................................................................................................ATGAGGCTGTTAACTCACAATATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTTCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAGGAGGTTGAATTTAATATCGATTTTCTCAAGAACATGTTCCATAAAGTTGAATGGAAGGCACTGGCGGAAGCTTCTACAACCATGGGTTACGCCGAACTGCCTGAAAATGTTGATGCTGCTATGCTCGACTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E408858" ref_strand="+" ref_description="SGN-E408858 [PPI-12-M4]">
      <seq>gtaagagagacgactgaaaatacaagttctccggcgccgtcgaaggcctacaaatcggaagttcctcgcattagcaaattctttccaacttccaaatgaggctgttaactcacaatatgttatcatccaacatcaagggagtcgcaaatggatttccgttgaagatcgaggttgtgaaagtggtagagaaggaggttgattttaatatcgattttctcaagaacatgttccataaagttgaatggaaggcactggcggaagcttctacaaccatgggttacgccgaactgcctgagaatgttgatgatgctatgctagactcagatgattttcttcataagtttcatcatgcccttcttgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcaataaaggcattcccaatatgcttcttcatgaagacgaagtctaattagttttttttttcttttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36583" stop="37733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36833" g_stop="36928" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="0.88"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37432" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="487" r_length="392" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E408858" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36833" e_stop="36928"/>
          <exon e_start="37041" e_stop="37432"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTG</genome_strand>
        <mrna_strand>GTAAGAGAGACGACTGAAAATACAAGTTCTCCGGCGCCGTCGAAGGCCTA-CAAATCGGAAGTTCCTCGCATTAGCAAATTCTTTCCAACTTCCAA................................................................................................................ATGAGGCTGTTAACTCACAATATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTTCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAGGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAAGTTGAATGGAAGGCACTGGCGGAAGCTTCTACAACCATGGGTTACGCCGAACTGCCTGAGAATGTTGATGATGCTATGCTAGACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTTGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAAGTCTAATTAGTTTTTTTTTTCTTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E576201" ref_strand="+" ref_description="SGN-E576201 [59382]">
      <seq>tgaaaatacaagttctccggcgccgtccaaggcctataaatcggaagtcctcgcattagcaatttctttccaacttccaaatgaggctgttaactcacaatatgttatcatccaacatcaagggagtcgcaaatggatttccgttgaagatcgaggttgtgaaagtggtagagaaggaggttgattttaatatcgattttctcaagaacatgttccataaagttgaatggaaggcactggcggaagcttctacaaccatgggttacgctgagctgcctgagaatgttgatgctgctatgctcgactcagatgattttcttcataagtttcatcatgcccttcttgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcagtaaaggcattcccaatatgcttcttcatgaagacgaggtctgattagttttttttttcttttctgggtattgatgtgttccggtttggaaatggggattagggttcttgataatagggtttaaggggtttgatatgatataccattttgattgtaatgctattattgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36734" stop="37837"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36847" g_stop="36928" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="0.86"/>
            <acceptor a_prob="0.995" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37537" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="575" r_length="495" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E576201" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E576201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36847" e_stop="36928"/>
          <exon e_start="37041" e_stop="37537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGA</genome_strand>
        <mrna_strand>TGAAAATACAAGTTCTCCGGCGCCGTCCAAGGCCTATAAA-TCGGAAG-TCCTCGCATTAGCAATTTCTTTCCAACTTCCAA................................................................................................................ATGAGGCTGTTAACTCACAATATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTTCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAGGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAAGTTGAATGGAAGGCACTGGCGGAAGCTTCTACAACCATGGGTTACGCTGAGCTGCCTGAGAATGTTGATGCTGCTATGCTCGACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTTGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAGTAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTC-TTTTCTGGGTATTGATGTGTTCCGGTTTGGAAATGGGGATTAGGGTTCTTGATAATAGGGTTTAAGGGGTTTGATATGATATACCATTTTG-ATTGTAATGCTATTATTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551005" ref_strand="+" ref_description="SGN-E551005 [TUS-54-M16]">
      <seq>gaaaaacaatttctccggcgccgtctaaggcctataaaatcggaagttcatcgcattagcaaattcatcccaacttcaaaatgaggttgttaactcacaacatgttatcatccaacatcaagggagtcgcaaatggattcccgttgaagatcgaggttgtgaaagtggtagagaaagaggttgatttcaatatcgattttctcaagaacatgttccataaggttgaatggaaggcactggcggaagcttctagaaccatgggttacgctgaactgcctgaaaatgttgatgctgctatggtaaactcagatgattttcttcataagtttcatcatgcccttctcgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcaataaaggcattcccaatatgcttcttcatgaagacgaggtctgattagttttttttttctttttttgggtattgatatgttttggtttggaaatggggattagggttcttgattatagggtttaaggggtttgttatgatataccattttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36548" stop="37819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36848" g_stop="36928" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37519" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="559" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E551005" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36848" e_stop="36928"/>
          <exon e_start="37041" e_stop="37519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAAT</genome_strand>
        <mrna_strand>GAAAA-ACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAA................................................................................................................ATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTCAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688776" ref_strand="+" ref_description="SGN-E688776 [t3_tus_54_M16]">
      <seq>gaaaaacaatttctccggcgccgtctaaggcctataaaatcggaagttcatcgcattagcaaattcatcccaacttcaaaatgaggttgttaactcacaacatgttatcatccaacatcaagggagtcgcaaatggattcccgttgaagatcgaggttgtgaaagtggtagagaaagaggttgatttcaatatcgattttctcaagaacatgttccataaggttgaatggaaggcactggcggaagcttctagaaccatgggttacgctgaactgcctgaaaatgttgatgctgctatggtaaactcagatgattttcttcataagtttcatcatgcccttctcgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcaataaaggcattcccaatatgcttcttcatgaagacgaggtctgattagttttttttttctttttttgggtattgatatgttttggtttggaaatggggattagggttcttgattatagggtttaaggggtttgttatgatataccattttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36548" stop="37819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36848" g_stop="36928" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37519" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="559" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E688776" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36848" e_stop="36928"/>
          <exon e_start="37041" e_stop="37519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAAT</genome_strand>
        <mrna_strand>GAAAA-ACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAA................................................................................................................ATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTCAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E257165" ref_strand="+" ref_description="SGN-E257165 [cLEG-46-D13]">
      <seq>aaaatacaatttctccggcgccgtctaaggcctataaaatcggaagttcatcgcattagcaaattcatcccaacttcaaaatgaggttgttaactcacaacatgttatcatccaacatcaagggagtcgcaaatggattcccgttgaagatcgaggttgtgaaagtggtagagaaagaggttgatttcaatatcgattttctcaagaacatgttccataaggttgaatggaaggcactggcggaagcttctagaaccatgggttacgctgaactgcctgaaaatgttgatgctgctatggtaaactcagatgattttcttcataagtttcatcatgcccttctcgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcaataaaggcattcccaatatgcttcttcatgaagacgaggtctgattagttttttttttctttttttgggtattgatatgttttggtttggaaatggggattagggttcttgattatagggtttaaggggtttgttatgatataccattttgaattgtaatgctattattggaagacactgtcgatattatggagtaattaccagaacttctttgttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36549" stop="37883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36849" g_stop="36928" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37583" g_length="543"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="623" r_length="543" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E257165" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257165" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36849" e_stop="36928"/>
          <exon e_start="37041" e_stop="37583"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTTGC</genome_strand>
        <mrna_strand>AAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAA................................................................................................................ATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTCAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471172" ref_strand="+" ref_description="SGN-E471172 [cSTB-23-E13]">
      <seq>ccgtccaaggcctataaaatcgaaagttcctcgcattagcaaattctttccaacttccaaaagaggttgctaactcacaatatattatcatccaacatcaaggaagtcgcaaatggatttccgttgaagatcgaggttgtgaaagtagagagggaggttgattttaatatcgattttctcaagaacatgttccttaaggttgaatggaaggaactggcggaagcttctagaaccatgggttacgccgaacttcctgaaatgttgatgttgctctgctcgacttagatgattttgttcagaagtttcatcatgcccttcttgagcttcatcttgaagagggtgccttggtttgtccagagactggccgaaaatttcctttcaataaaggcattcccaatatgctttttcatgaagacgagatctgattagtttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36569" stop="37719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36869" g_stop="36928" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112">
            <donor d_prob="0.991" d_score="0.90"/>
            <acceptor a_prob="0.995" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37041" g_stop="37419" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="435" r_length="375" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E471172" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.009" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36869" e_stop="36928"/>
          <exon e_start="37041" e_stop="37419"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAAGTAATTCTAATTTCTTTTGTTTCTGTTTTCTCCCCCGAGTATTTTTTTGAATTTAAGTGTTTGAAATGTTTTCTTACTGGGAAATTTTTGTTTTCATGAAATTTATTCGCAGATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTT</genome_strand>
        <mrna_strand>CCGTCCAAGGCCTATAAAATCGAAAGTTCCTCGCATTAGCAAATTCTTTCCAACTTCCAA................................................................................................................AAGAGGTTGCTAACTCACAATATATTATCATCCAACATCAAGGAAGTCGCAAATGGATTTCCGTTGAAGATCGAGGTTGTGAAA---GTAGAGAGGGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCTTAAGGTTGAATGGAAGGAACTGGCGGAAGCTTCTAGAACCATGGGTTACGCCGAACTTCCTG-AAATGTTGATGTTGCTCTGCTCGACTTAGATGATTTTGTTCAGAAGTTTCATCATGCCCTTCTTGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGAAAATTTCCTTTCAATAAAGGCATTCCCAATATGCTTTTTCATGAAGACGAGATCTGATTAGTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E609801" ref_strand="+" ref_description="SGN-E609801 [46292]">
      <seq>aagtggtagagaaggaggttgattttaatatcgattttctcaagaacatgttccataaagttgaatggaaggcactggcggaagcttctacaaccatgggttacgctgagctgcctgagaatgttgatgctgctatgctcgactcagatgattttcttcataagtttcatcatgcccttcttgagcttcatcttgaagagggtgccttggtttgtccagagactggccggaaatttcctgtcagtaaaggcattcccaatatgcttcttcatgaagacgaggtctgattagtttttttttttcttttctgggtattgatgtgttccggtttggaaatggggattagggttcttgataatagggtttaaggggtttgatatgatataccattttgattgtaatgctattattggaagacattgtcgatattaaggagtaattaccagaacttctttgttgcaccacaccactatatctgagattgtagttttgtatcgaaattacaatcgtattctgttttgaagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="36823" stop="37945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37123" g_stop="37658" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E609801" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37123" e_stop="37658"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTTGCACCACACTGCTATATCTGAGATTGTAGTTTTGTATCGAAATTACAACCTTCAAACTTCTGTTTTGAAGTTTATAA</genome_strand>
        <mrna_strand>AAGTGGTAGAGAAGGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAAGTTGAATGGAAGGCACTGGCGGAAGCTTCTACAACCATGGGTTACGCTGAGCTGCCTGAGAATGTTGATGCTGCTATGCTCGACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTTGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAGTAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTTCTTTTCTGGGTATTGATGTGTTCCGGTTTGGAAATGGGGATTAGGGTTCTTGATAATAGGGTTTAAGGGGTTTGATATGATATACCATTTTG-ATTGTAATGCTATTATTGGAAGACATTGTCGATATTAAGGAGTAATTACCAGAACTTCTTTGTTGCACCACACCACTATATCTGAGATTGTAGTTTTGTATCGAAATTACAA---TCGTA-TTCTGTTTTGAAGTTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E616375" ref_strand="-" ref_description="SGN-E616375 [66184]">
      <seq>tttttttcttttctgggtattgatgtgttccggtttggaaatggggattagggttcttgataatagggtttaaggggtttgatatgatataccattttgattgtaatgctattattggaagacattgtcgatattaaggagtaattaccagaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="37117" stop="37871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37417" g_stop="37571" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="154" polyA_stop="165"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E616375" ref_strand="-">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>155</cumulative_length_of_scored_exons>
        <coverage percentage="0.939" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E616375" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="37417" e_stop="37571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAA</genome_strand>
        <mrna_strand>TTTTTTTC-TTTTCTGGGTATTGATGTGTTCCGGTTTGGAAATGGGGATTAGGGTTCTTGATAATAGGGTTTAAGGGGTTTGATATGATATACCATTTTG-ATTGTAATGCTATTATTGGAAGACATTGTCGATATTAAGGAGTAATTACCAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379406" ref_strand="+" ref_description="SGN-E379406 [TUS-3-A3](-)">
      <seq>catgagaatcaaggatgtggtgcgcatttcatttcatttctaattcaagcctacaagagagctctgccggtttaccttccagtttatttagttcctgcactcattgtacatcgtcaaggcatcttgaaaagacctaacacaattttggcgaagggtctcctcggtacagcaaggtctagtctatttctctccatgtattgttcgtctgcctggttgtggacatgttttctcttcaggctgttcaagaggtgtaacatccccatggtggcactgggaacgttccctactggtctggccctggcaatcgagaagaaaagcagaaggatagagatttcactctattgtcttgctcgggcacttgagagtttcgtcacgtgcatggctgatgttggttatttgcctcagtctgaaaaattgaagaggggtgatgttgtgatctttagcatggcaactgcaattatcatgcattgttatgctatggagagggatgtttttaaatccaagtatttgaatgttcttgattgggtgtttggtgtgcctcttcccccctatgataccactcctcgcaagaaatggcgttcctcatccatataaagaaccgcgagatataattgtacacaatgcatgtcgcaaaaaaataatttaactttgtacaccacaatagtcatagaactaatctaccttcatgcaaatgtagaatgatttatgatctgtttagttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="39601" stop="37745"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39301" g_stop="39171" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="131" r_length="131" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38896" g_stop="38816" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="212" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38636" g_stop="38570" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="279" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38569" i_stop="38490" i_length="80">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38489" g_stop="38045" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="724" r_length="445" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E379406" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39301" e_stop="39171"/>
          <exon e_start="38896" e_stop="38816"/>
          <exon e_start="38636" e_stop="38570"/>
          <exon e_start="38489" e_stop="38045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAGGTACTGAATGTTGGTTTCTTCAATGATAAATCATCTTGTCTTCTTCGTTTTCTCTTGGATTATCCGTTGATCAGCCATTGGTTGATAAAATCTGTAGCATTATAGGAGAATTATTGTAGCATAGTTGTTACTACGAATAATTTATCATTTGGAAGTACATTTTCCTCATGATAGTCCATATTGCTTTTAGCCCATTCCATTTCCAAGCTCTATAAGCGTATAATCATCTTCCTTCAGCTCCAGTTATTACAACATTCTAAGGAAATTTTTGCAGACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTGGTAAGAACTAAGAACTGATTTGATTTGTAAAATTTTTGCATTTTACTGTCTTTATTATGAATAATTTTGCACGTTTTTCAGTCCTTTCGCCTGACGATGTTAAGCCCCCTCTAAGTTTAAGTACGCTTGCTTCAAAATGATTGCTCATCTCAAAGCTTCATCTGCTGTTTCATTGTTAGGTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACGGTATAGGACAGATTAATTATCTTTCTTAACCAATTGTTTTGCTTCTCCCTTTGTAAAGCTAACATAAATACATTTTACAGTTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAAATAATTTAACTTTGTACACCACAATAGTCATAGAACTAATCTACCTTCATGCAAATGTAGAATGATTTATGGTCTGTTTAGTTGGAA</genome_strand>
        <mrna_strand>CATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG..................................................................................................................................................................................................................................................................................ACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTG...................................................................................................................................................................................GTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACG................................................................................TTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTGAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTTTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAAATAATTTAACTTTGTACACCACAATAGTCATAGAACTAATCTACCTTCATGCAAATGTAGAATGATTTATGATCTGTTTAGTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362636" ref_strand="+" ref_description="SGN-E362636 [cLPP-1-H20]">
      <seq>aatcaaggatgtggtgcacatttcatttcatttctaattcaagcctacaagagagctctgccagtttaccttccagtttatttagttcctgcactcattgtacatcgtcaaggcatcttgaaaagacctaacacaattttggcgaagggtctccttggtacagcaaggtctagtctatttctctccatgtattgttcgtctgcctggttgtggacatgctttctcttcaggctgttcaagaggtgtaacatccccatggtggcactgggaacgttccctactggtctggccctggcaatcgagaagaaaagcagaaggatagagatttcactctattgtcttgctcgggcacttgagagtttcgtcacgtgcatggctgatgttggttatttgcctcagtctgaaaaattaaagagaggtgatgtcgtgatctttagcatggcaactgcaattatcatgcattgttatgctatggagagggatgtcttcaaatccaagtacttgaatgttcttgattgggtgtttggtgtgcctcttcccccctacgataccactcctcgcaagaaatggcgttcctcatccatataaggaaccgcgagatataattgtacacaatgcatgtcgcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="39595" stop="37832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39295" g_stop="39171" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38896" g_stop="38816" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="206" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38636" g_stop="38570" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="273" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38569" i_stop="38490" i_length="80">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38489" g_stop="38132" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="631" r_length="358" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E362636" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39295" e_stop="39171"/>
          <exon e_start="38896" e_stop="38816"/>
          <exon e_start="38636" e_stop="38570"/>
          <exon e_start="38489" e_stop="38132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAGGTACTGAATGTTGGTTTCTTCAATGATAAATCATCTTGTCTTCTTCGTTTTCTCTTGGATTATCCGTTGATCAGCCATTGGTTGATAAAATCTGTAGCATTATAGGAGAATTATTGTAGCATAGTTGTTACTACGAATAATTTATCATTTGGAAGTACATTTTCCTCATGATAGTCCATATTGCTTTTAGCCCATTCCATTTCCAAGCTCTATAAGCGTATAATCATCTTCCTTCAGCTCCAGTTATTACAACATTCTAAGGAAATTTTTGCAGACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTGGTAAGAACTAAGAACTGATTTGATTTGTAAAATTTTTGCATTTTACTGTCTTTATTATGAATAATTTTGCACGTTTTTCAGTCCTTTCGCCTGACGATGTTAAGCCCCCTCTAAGTTTAAGTACGCTTGCTTCAAAATGATTGCTCATCTCAAAGCTTCATCTGCTGTTTCATTGTTAGGTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACGGTATAGGACAGATTAATTATCTTTCTTAACCAATTGTTTTGCTTCTCCCTTTGTAAAGCTAACATAAATACATTTTACAGTTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAA</genome_strand>
        <mrna_strand>AATCAAGGATGTGGTGCACATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCAGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG..................................................................................................................................................................................................................................................................................ACCTAACACAATTTTGGCGAAGGGTCTCCTTGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTG...................................................................................................................................................................................GTTGTGGACATGCTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACG................................................................................TTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGAGGTGATGTCGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTCAAATCCAAGTACTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTACGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAGGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E619826" ref_strand="+" ref_description="SGN-E619826 [70520]">
      <seq>cgatagtacatgagaatcaaggatgtggtgcacatttcatttcatttctaattcaagcctacaagagagctcttccagtttaccttccagtttatttagttcctgcactcattgtacatcgtcaaggcatcttgaaaagacctaacacaattttggcgaagggtctcctcggtacagcaaggtctagtctatttctctccatgtattgttcatctgcctggttatggacatgttttctcttcaggctgttcaagaggtgtaacatccccatggtggcactgggaacgttccctactggtctggccctggcaattgagaagaaaagcagaaggatagagatttcactctattgccttgctcgggcacttgagagtttcgtcacgtgcatggctgatgttggttatttgcctcaatctgaaaaattaaagagaggtgatgtcgtgatctttagcatggcaactgcaattatcatgcattgttatgctatggagagggatgtcttcaaatccaagtacttgaatgttcttgattgggtgtttggtgtgcctcttcccccctatgacaccactcctcgcaagaaatgccgttcctcatcaatatagcacagatgatggattattcttttccccgcaagagataattgtacacaatgcatgtcccaaaaaaataatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="39608" stop="37826"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39309" g_stop="39171" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38896" g_stop="38816" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="220" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.932" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38636" g_stop="38570" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="287" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38569" i_stop="38490" i_length="80">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="38489" g_stop="38169" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="606" r_length="319" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E619826" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="0.905" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E619826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39309" e_stop="39171"/>
          <exon e_start="38896" e_stop="38816"/>
          <exon e_start="38636" e_stop="38570"/>
          <exon e_start="38489" e_stop="38169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAGGTACTGAATGTTGGTTTCTTCAATGATAAATCATCTTGTCTTCTTCGTTTTCTCTTGGATTATCCGTTGATCAGCCATTGGTTGATAAAATCTGTAGCATTATAGGAGAATTATTGTAGCATAGTTGTTACTACGAATAATTTATCATTTGGAAGTACATTTTCCTCATGATAGTCCATATTGCTTTTAGCCCATTCCATTTCCAAGCTCTATAAGCGTATAATCATCTTCCTTCAGCTCCAGTTATTACAACATTCTAAGGAAATTTTTGCAGACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTGGTAAGAACTAAGAACTGATTTGATTTGTAAAATTTTTGCATTTTACTGTCTTTATTATGAATAATTTTGCACGTTTTTCAGTCCTTTCGCCTGACGATGTTAAGCCCCCTCTAAGTTTAAGTACGCTTGCTTCAAAATGATTGCTCATCTCAAAGCTTCATCTGCTGTTTCATTGTTAGGTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACGGTATAGGACAGATTAATTATCTTTCTTAACCAATTGTTTTGCTTCTCCCTTTGTAAAGCTAACATAAATACATTTTACAGTTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACC</genome_strand>
        <mrna_strand>CGATAGTACATGAGAATCAAGGATGTGGTGCACATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTTCCAGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG..................................................................................................................................................................................................................................................................................ACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCATCTGCCTG...................................................................................................................................................................................GTTATGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACG................................................................................TTCCCTACTGGTCTGGCCCTGGCAATTGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGCCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAATCTGAAAAATTAAAGAGAGGTGATGTCGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTCAAATCCAAGTACTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGACACCACTCCTCGCAAGAAATGCCGTTCCTCAT-CA-ATATAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E698828" ref_strand="+" ref_description="SGN-E698828 [FA07CH10]">
      <seq>cgtttaggtggcctcgctatctttgctgttctctctcggctcctacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaacttgggctcatggagacattttccttatgtgtctatcctcttcacagatcctgtcagcttacatattgaagcaagatagtctgcatccatcttacaaatcctttctcaacaaacatggtggcaaagctttggttatcctgcagggtgtgaaagacctggcatgtgggaactctgtaatgaatttggaagcaatagagaatcactacaagtccaatggtattaacatcaaactggatccacaaatgaaagtaccctgctcgatagtacatgagaatcaaggatgtggtgcgcatttcatttcatttctaattcaagcctacaagagagctctgccggtttaccttccagtttatttagttcctgcactcattgtacatcgtcaaggcatcttgaaaagacctaacacaattttggcgaagggtctcctcggtacagcaaggtctagtctatttctctccatgtattgttcgtctgcctggntgtggacatgttttctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43636" stop="38316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43341" g_stop="43271" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.915"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="212" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42499" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="437" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40699" g_stop="40492" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="645" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40491" i_stop="39308" i_length="1184">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39307" g_stop="39171" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="782" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.527" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38896" g_stop="38816" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="783" r_stop="863" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="38636" g_stop="38616" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="864" r_stop="884" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E698828" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>884</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E698828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43341" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42499"/>
          <exon e_start="40699" e_stop="40492"/>
          <exon e_start="39307" e_stop="39171"/>
          <exon e_start="38896" e_stop="38816"/>
          <exon e_start="38636" e_stop="38616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCTGTAAGCATCGGTTTTTCTCCTTTTGTGGGACTTAATTTCATATATAAATATACTGAGTAATGATATCCTTCCTTTAATTACAAGCCATATTTCTTAAGCTTTATATGTATAATACATTGTTATTTTTACTACACAATCTCGTTTCGTTCTTGACTATGTAAAACTGCAATTTTATGCATTTTTAGTGCTGCATTGTTGATAAACTGCTATGTCATGAACAAGTAAACGTTTCTTCCTTTGAACATGATGTAAGTTGCGGTGCTTAGAAGTTGAGATTAACCATGCTTGGCTCTAAGCTGATAAATCATATTGATTTGGCTTTGTATTGAAGTTGGCCAAGAAAGAGGTACTTTCCAAGTCAACCATGATAGAGAAGTTTCCCTAAGTGTCCATTGCCTAAATTTTTTATCCCATTTTAGTGGAGAGTGAGGCAACTTAAATAATTGGAGGATGAAGTTGACTTCTTGATTAAAATTCACCCTTATGTTTTGATATGTATCAGATTGATTGTCTTTGGGATTATTCCAATGGAAGTGACAGCTACATAAATGCATGAACTGTGTTCAGTCTATTACCAGTGGTTAACAACTTTGTAAGCTTTATGTTCTAATCGTTGTATGTGCGTGCTCAGTCTCTCCTTTATTGAAGTGGCTGTCTCAGATTAAAAAAGTCATGACTGTCAAAGTGCTGATAGGACACCAACATTTTCAGTAGTCTTATTATGATGAATGTTAAAACTGATAGTCTCATTTGGTAATCTGGTAATATGTTTCAAGAATAGTAGAATTTTCATCTGTCAATCAGGTCAATATCAGATTCTTTATTCATATGTCAATATACAATGAAAGAACTATATCATGACCTTGCATTATGGAGAATGTGAAAAAACATGTTATAGTTTCAGCAGGATTTTATGGATTGTCTTGAGATCTAATCTCCATTCCCTTCTATCAATGTAAGTAGGACCCTGTTTATAAAAATCTTGATGCCATGTGTTTAGTTTAATTAATTAAGGATACTACTGCACCAATTTGCAGCGATAACATGAGATAGTTGACATATTTAGTATCTCCTTTGAAGAAAGCAACACTGCATTTCCCAAGCTCTAGCTTCCTTATACATATCCATGTATCTTATGTGGAAAGGATTTTTATAGAGCAAAGCCTTCAATGAACATACTACTGTCTTTGCATGTGTGTCATCCCGAAGCACAACAATTCAAGGATAATGTACCTCAACAATGAGTAAAAGTAACTGTTTGGGCTGTCGTGCTCCATTAGCCCAAGTGGAATTCCTATATTTAACCAAGCTAGCATTGTCATCCCATATAACTTTGGCTCCTGCTGATGATGTGGGAGATTGGGTGTATTTTGTTAGCAACGGCAAGAAGAGGTCAAATCTGTAATATTCAAAAGGAAGGGATACAATATATACACAACAAGTCAGTTTTTAGCACTTCACAATATGCACAGCAAGTGCTAACGTTGTAGGTATGTTACTTCAATGGAAAAGATAAAAAATTGTGCCTCATAGGATTGGTTGTGATTACAAGTTCCTGCAGAAATTACCCAAAACTTCTGTCTACAAGTAGTTCTCTAAACGCTTGTTTGTCATTGGTATTACAATAAAGATAAAAAATCTCTTTCCTGTCGGTCTATTGTTTTGATTAAAATGTAGTGAGTTCAGAATTCTAAACCTGATTCACTCAGAAGCCTGATTTGCATATTCTGAGTCTGAGATGCCTATTCCCTTATGAACAATGTTTTTTCTCTCATATTGCATTTTTTAATTTATGTCAGGTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCGGTATGTCATAGTTTCCTGTTCTTTGGCAGGAATACTAGTCCAAATATGAATGCTGCTTTCTATTTTAGTGGGCGTGTTCCTCCTAAAGCAAATGTTGCTACTTTATAAAATGGTGGAGGGGAAAGGAGTTAAAATATTTACTGTGTAGAGCTAGAAGTTGGAGGTTTGGCTGGAGGTTGTTCGTGTCCTCTGTTTCTATTGTTCTGCATTCTTAAGCTTTTGAGGTTGTTTGGGTAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTAGAGCTAATGAAGGCAAATGCAATATCTGGATGTTATTATGTGTTAGTGGAAAATGTGTTGTTCACTTCCTTTTGTCTATTATACTCTGTTTGGAAATTATGATACTTTTTCCGTTCTTTCATGTGGTATTTTGGGGCTATGTGAAATGCATTTCAGTTGTATTACAGCAAAAGGAACTGTTCTGATTTGATTATCATATTGAATACCCAGTTGAAGAGGAGAACTATATGAGGTTTGATATGTGTGGACTATCAATTCTGCAGATCAAGAGTTCTAGATTAAGTACACGATTAGTTTTGTTCATCAATTTGCTTTATAGGTCCAATTATGACGCACGAATCACTGATTAAAAAATACCTGCAGTGCTGTAGCCACTTTATACTACCAAAAAGAAAAAGAAGCTGTAGCTTCATGATTTTTCATTTAAGGATGTAACTGGATGATGCAATTGCCCTTTCATGTACTTCTGCTACCTGTAAATGTTATGCCAAAACCAAACATCCTGTTGTATTGGCCTCAATAGTAGACTCTTAATTGTGTTTCATGTGTTTGCCTAAGGTAGGTGCTGCTATCTTGAAATTTTTTGGATTCATAGTAATCAAGGATTGCAAGAGTTTAATCGACATGCTGATATTGTTGATCTGCAAGCACTGTTTTCCCTTTGGATGTTCATGCAGATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAGGTACTGAATGTTGGTTTCTTCAATGATAAATCATCTTGTCTTCTTCGTTTTCTCTTGGATTATCCGTTGATCAGCCATTGGTTGATAAAATCTGTAGCATTATAGGAGAATTATTGTAGCATAGTTGTTACTACGAATAATTTATCATTTGGAAGTACATTTTCCTCATGATAGTCCATATTGCTTTTAGCCCATTCCATTTCCAAGCTCTATAAGCGTATAATCATCTTCCTTCAGCTCCAGTTATTACAACATTCTAAGGAAATTTTTGCAGACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTGGTAAGAACTAAGAACTGATTTGATTTGTAAAATTTTTGCATTTTACTGTCTTTATTATGAATAATTTTGCACGTTTTTCAGTCCTTTCGCCTGACGATGTTAAGCCCCCTCTAAGTTTAAGTACGCTTGCTTCAAAATGATTGCTCATCTCAAAGCTTCATCTGCTGTTTCATTGTTAGGTTGTGGACATGTTTTCTCTT</genome_strand>
        <mrna_strand>CGTTTAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTCCTACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG..................................................................................................................................................................................................................................................................................ACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTG...................................................................................................................................................................................GNTGTGGACATGTTTTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275134" ref_strand="+" ref_description="SGN-E275134 [cLEN-9-H11]">
      <seq>tttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaacttgggctcatggagacattttccttatgtgtctatcctcttcacagatcctgtcagcttacatattgaagcaagatagtctgcatccatcttacaaatcctttctcaacaaacatggtggcaaagctttggttatcctgcagggtgtgaaagacctggcatgtgggaactctgtaatgaatttggaagcaatagagaatcactacaagtccaatggtattaacatcaaactggatccacaaatgaaagtaccctgctcgatagtacatgagaatcaaggatgtggtgcgcatttcatttcatttctaattcaagcctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43402" stop="38948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43102" g_stop="43043" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42723" g_stop="42499" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="285" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40699" g_stop="40492" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="493" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40491" i_stop="39308" i_length="1184">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.906" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39307" g_stop="39248" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="553" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E275134" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43102" e_stop="43043"/>
          <exon e_start="42723" e_stop="42499"/>
          <exon e_start="40699" e_stop="40492"/>
          <exon e_start="39307" e_stop="39248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCTGTAAGCATCGGTTTTTCTCCTTTTGTGGGACTTAATTTCATATATAAATATACTGAGTAATGATATCCTTCCTTTAATTACAAGCCATATTTCTTAAGCTTTATATGTATAATACATTGTTATTTTTACTACACAATCTCGTTTCGTTCTTGACTATGTAAAACTGCAATTTTATGCATTTTTAGTGCTGCATTGTTGATAAACTGCTATGTCATGAACAAGTAAACGTTTCTTCCTTTGAACATGATGTAAGTTGCGGTGCTTAGAAGTTGAGATTAACCATGCTTGGCTCTAAGCTGATAAATCATATTGATTTGGCTTTGTATTGAAGTTGGCCAAGAAAGAGGTACTTTCCAAGTCAACCATGATAGAGAAGTTTCCCTAAGTGTCCATTGCCTAAATTTTTTATCCCATTTTAGTGGAGAGTGAGGCAACTTAAATAATTGGAGGATGAAGTTGACTTCTTGATTAAAATTCACCCTTATGTTTTGATATGTATCAGATTGATTGTCTTTGGGATTATTCCAATGGAAGTGACAGCTACATAAATGCATGAACTGTGTTCAGTCTATTACCAGTGGTTAACAACTTTGTAAGCTTTATGTTCTAATCGTTGTATGTGCGTGCTCAGTCTCTCCTTTATTGAAGTGGCTGTCTCAGATTAAAAAAGTCATGACTGTCAAAGTGCTGATAGGACACCAACATTTTCAGTAGTCTTATTATGATGAATGTTAAAACTGATAGTCTCATTTGGTAATCTGGTAATATGTTTCAAGAATAGTAGAATTTTCATCTGTCAATCAGGTCAATATCAGATTCTTTATTCATATGTCAATATACAATGAAAGAACTATATCATGACCTTGCATTATGGAGAATGTGAAAAAACATGTTATAGTTTCAGCAGGATTTTATGGATTGTCTTGAGATCTAATCTCCATTCCCTTCTATCAATGTAAGTAGGACCCTGTTTATAAAAATCTTGATGCCATGTGTTTAGTTTAATTAATTAAGGATACTACTGCACCAATTTGCAGCGATAACATGAGATAGTTGACATATTTAGTATCTCCTTTGAAGAAAGCAACACTGCATTTCCCAAGCTCTAGCTTCCTTATACATATCCATGTATCTTATGTGGAAAGGATTTTTATAGAGCAAAGCCTTCAATGAACATACTACTGTCTTTGCATGTGTGTCATCCCGAAGCACAACAATTCAAGGATAATGTACCTCAACAATGAGTAAAAGTAACTGTTTGGGCTGTCGTGCTCCATTAGCCCAAGTGGAATTCCTATATTTAACCAAGCTAGCATTGTCATCCCATATAACTTTGGCTCCTGCTGATGATGTGGGAGATTGGGTGTATTTTGTTAGCAACGGCAAGAAGAGGTCAAATCTGTAATATTCAAAAGGAAGGGATACAATATATACACAACAAGTCAGTTTTTAGCACTTCACAATATGCACAGCAAGTGCTAACGTTGTAGGTATGTTACTTCAATGGAAAAGATAAAAAATTGTGCCTCATAGGATTGGTTGTGATTACAAGTTCCTGCAGAAATTACCCAAAACTTCTGTCTACAAGTAGTTCTCTAAACGCTTGTTTGTCATTGGTATTACAATAAAGATAAAAAATCTCTTTCCTGTCGGTCTATTGTTTTGATTAAAATGTAGTGAGTTCAGAATTCTAAACCTGATTCACTCAGAAGCCTGATTTGCATATTCTGAGTCTGAGATGCCTATTCCCTTATGAACAATGTTTTTTCTCTCATATTGCATTTTTTAATTTATGTCAGGTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCGGTATGTCATAGTTTCCTGTTCTTTGGCAGGAATACTAGTCCAAATATGAATGCTGCTTTCTATTTTAGTGGGCGTGTTCCTCCTAAAGCAAATGTTGCTACTTTATAAAATGGTGGAGGGGAAAGGAGTTAAAATATTTACTGTGTAGAGCTAGAAGTTGGAGGTTTGGCTGGAGGTTGTTCGTGTCCTCTGTTTCTATTGTTCTGCATTCTTAAGCTTTTGAGGTTGTTTGGGTAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTAGAGCTAATGAAGGCAAATGCAATATCTGGATGTTATTATGTGTTAGTGGAAAATGTGTTGTTCACTTCCTTTTGTCTATTATACTCTGTTTGGAAATTATGATACTTTTTCCGTTCTTTCATGTGGTATTTTGGGGCTATGTGAAATGCATTTCAGTTGTATTACAGCAAAAGGAACTGTTCTGATTTGATTATCATATTGAATACCCAGTTGAAGAGGAGAACTATATGAGGTTTGATATGTGTGGACTATCAATTCTGCAGATCAAGAGTTCTAGATTAAGTACACGATTAGTTTTGTTCATCAATTTGCTTTATAGGTCCAATTATGACGCACGAATCACTGATTAAAAAATACCTGCAGTGCTGTAGCCACTTTATACTACCAAAAAGAAAAAGAAGCTGTAGCTTCATGATTTTTCATTTAAGGATGTAACTGGATGATGCAATTGCCCTTTCATGTACTTCTGCTACCTGTAAATGTTATGCCAAAACCAAACATCCTGTTGTATTGGCCTCAATAGTAGACTCTTAATTGTGTTTCATGTGTTTGCCTAAGGTAGGTGCTGCTATCTTGAAATTTTTTGGATTCATAGTAATCAAGGATTGCAAGAGTTTAATCGACATGCTGATATTGTTGATCTGCAAGCACTGTTTTCCCTTTGGATGTTCATGCAGATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTAC</genome_strand>
        <mrna_strand>TTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E249653" ref_strand="+" ref_description="SGN-E249653 [cLEF-56-F5]">
      <seq>taaatctaaatttagggtttaattgtcaaatttttaaaataaaaatgagggctcttggagacttgagcgatatctttttattaagggcccgtaaattgatgccattgactatttctagtaagtttatgtagtcactactttatgatttagattaaactgctttgtagattaatgaattttatccatatcatagttctttttccttttttgttgtttgttaattaccctttgcctttcaataaccagcatgcttgatagtcaaatactttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="40557" stop="39685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40257" g_stop="39985" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="273" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E249653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40257" e_stop="39985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTA</genome_strand>
        <mrna_strand>TAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E703912" ref_strand="+" ref_description="SGN-E703912 [FA22DC10]">
      <seq>cggaaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaacttgggctcatggagacattttccttatgtgtctatcctcttcacagatcctgtcagcttacatattgaagcaagatagtctgcatccatcttacaaatcctttctcaacaaacatggtggcnaagctttggttatcctgcagggtgtgaaagacctggcatgtgggaactctggtatgaatttggaagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43901" stop="40259"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43601" g_stop="43271" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="472" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42499" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="697" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40699" g_stop="40559" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="698" r_stop="838" r_length="141" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E703912" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>838</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43601" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42499"/>
          <exon e_start="40699" e_stop="40559"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCTGTAAGCATCGGTTTTTCTCCTTTTGTGGGACTTAATTTCATATATAAATATACTGAGTAATGATATCCTTCCTTTAATTACAAGCCATATTTCTTAAGCTTTATATGTATAATACATTGTTATTTTTACTACACAATCTCGTTTCGTTCTTGACTATGTAAAACTGCAATTTTATGCATTTTTAGTGCTGCATTGTTGATAAACTGCTATGTCATGAACAAGTAAACGTTTCTTCCTTTGAACATGATGTAAGTTGCGGTGCTTAGAAGTTGAGATTAACCATGCTTGGCTCTAAGCTGATAAATCATATTGATTTGGCTTTGTATTGAAGTTGGCCAAGAAAGAGGTACTTTCCAAGTCAACCATGATAGAGAAGTTTCCCTAAGTGTCCATTGCCTAAATTTTTTATCCCATTTTAGTGGAGAGTGAGGCAACTTAAATAATTGGAGGATGAAGTTGACTTCTTGATTAAAATTCACCCTTATGTTTTGATATGTATCAGATTGATTGTCTTTGGGATTATTCCAATGGAAGTGACAGCTACATAAATGCATGAACTGTGTTCAGTCTATTACCAGTGGTTAACAACTTTGTAAGCTTTATGTTCTAATCGTTGTATGTGCGTGCTCAGTCTCTCCTTTATTGAAGTGGCTGTCTCAGATTAAAAAAGTCATGACTGTCAAAGTGCTGATAGGACACCAACATTTTCAGTAGTCTTATTATGATGAATGTTAAAACTGATAGTCTCATTTGGTAATCTGGTAATATGTTTCAAGAATAGTAGAATTTTCATCTGTCAATCAGGTCAATATCAGATTCTTTATTCATATGTCAATATACAATGAAAGAACTATATCATGACCTTGCATTATGGAGAATGTGAAAAAACATGTTATAGTTTCAGCAGGATTTTATGGATTGTCTTGAGATCTAATCTCCATTCCCTTCTATCAATGTAAGTAGGACCCTGTTTATAAAAATCTTGATGCCATGTGTTTAGTTTAATTAATTAAGGATACTACTGCACCAATTTGCAGCGATAACATGAGATAGTTGACATATTTAGTATCTCCTTTGAAGAAAGCAACACTGCATTTCCCAAGCTCTAGCTTCCTTATACATATCCATGTATCTTATGTGGAAAGGATTTTTATAGAGCAAAGCCTTCAATGAACATACTACTGTCTTTGCATGTGTGTCATCCCGAAGCACAACAATTCAAGGATAATGTACCTCAACAATGAGTAAAAGTAACTGTTTGGGCTGTCGTGCTCCATTAGCCCAAGTGGAATTCCTATATTTAACCAAGCTAGCATTGTCATCCCATATAACTTTGGCTCCTGCTGATGATGTGGGAGATTGGGTGTATTTTGTTAGCAACGGCAAGAAGAGGTCAAATCTGTAATATTCAAAAGGAAGGGATACAATATATACACAACAAGTCAGTTTTTAGCACTTCACAATATGCACAGCAAGTGCTAACGTTGTAGGTATGTTACTTCAATGGAAAAGATAAAAAATTGTGCCTCATAGGATTGGTTGTGATTACAAGTTCCTGCAGAAATTACCCAAAACTTCTGTCTACAAGTAGTTCTCTAAACGCTTGTTTGTCATTGGTATTACAATAAAGATAAAAAATCTCTTTCCTGTCGGTCTATTGTTTTGATTAAAATGTAGTGAGTTCAGAATTCTAAACCTGATTCACTCAGAAGCCTGATTTGCATATTCTGAGTCTGAGATGCCTATTCCCTTATGAACAATGTTTTTTCTCTCATATTGCATTTTTTAATTTATGTCAGGTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAAT</genome_strand>
        <mrna_strand>CGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCNAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGGTATGAATTTGGAAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721993" ref_strand="+" ref_description="SGN-E721993 [FC15DF01]">
      <seq>aatcggccgaattgagagtttcatccggaaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaacttgggctcatggagacattttccttatgtgtctatcctcttcacagatcctgtcagcttacatattgaagcaagatagtctgcatccatcttacaaatcctttctcaacaaacatggtggcaaagctttggttatcctgcagggtgtgaaagacctggcatgtgggaactctgtaatgaatttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43918" stop="40266"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43610" g_stop="43271" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="356" r_length="340" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="497" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42499" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="722" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40699" g_stop="40566" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="723" r_stop="856" r_length="134" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E721993" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>840</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721993" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43610" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42499"/>
          <exon e_start="40699" e_stop="40566"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCTGTAAGCATCGGTTTTTCTCCTTTTGTGGGACTTAATTTCATATATAAATATACTGAGTAATGATATCCTTCCTTTAATTACAAGCCATATTTCTTAAGCTTTATATGTATAATACATTGTTATTTTTACTACACAATCTCGTTTCGTTCTTGACTATGTAAAACTGCAATTTTATGCATTTTTAGTGCTGCATTGTTGATAAACTGCTATGTCATGAACAAGTAAACGTTTCTTCCTTTGAACATGATGTAAGTTGCGGTGCTTAGAAGTTGAGATTAACCATGCTTGGCTCTAAGCTGATAAATCATATTGATTTGGCTTTGTATTGAAGTTGGCCAAGAAAGAGGTACTTTCCAAGTCAACCATGATAGAGAAGTTTCCCTAAGTGTCCATTGCCTAAATTTTTTATCCCATTTTAGTGGAGAGTGAGGCAACTTAAATAATTGGAGGATGAAGTTGACTTCTTGATTAAAATTCACCCTTATGTTTTGATATGTATCAGATTGATTGTCTTTGGGATTATTCCAATGGAAGTGACAGCTACATAAATGCATGAACTGTGTTCAGTCTATTACCAGTGGTTAACAACTTTGTAAGCTTTATGTTCTAATCGTTGTATGTGCGTGCTCAGTCTCTCCTTTATTGAAGTGGCTGTCTCAGATTAAAAAAGTCATGACTGTCAAAGTGCTGATAGGACACCAACATTTTCAGTAGTCTTATTATGATGAATGTTAAAACTGATAGTCTCATTTGGTAATCTGGTAATATGTTTCAAGAATAGTAGAATTTTCATCTGTCAATCAGGTCAATATCAGATTCTTTATTCATATGTCAATATACAATGAAAGAACTATATCATGACCTTGCATTATGGAGAATGTGAAAAAACATGTTATAGTTTCAGCAGGATTTTATGGATTGTCTTGAGATCTAATCTCCATTCCCTTCTATCAATGTAAGTAGGACCCTGTTTATAAAAATCTTGATGCCATGTGTTTAGTTTAATTAATTAAGGATACTACTGCACCAATTTGCAGCGATAACATGAGATAGTTGACATATTTAGTATCTCCTTTGAAGAAAGCAACACTGCATTTCCCAAGCTCTAGCTTCCTTATACATATCCATGTATCTTATGTGGAAAGGATTTTTATAGAGCAAAGCCTTCAATGAACATACTACTGTCTTTGCATGTGTGTCATCCCGAAGCACAACAATTCAAGGATAATGTACCTCAACAATGAGTAAAAGTAACTGTTTGGGCTGTCGTGCTCCATTAGCCCAAGTGGAATTCCTATATTTAACCAAGCTAGCATTGTCATCCCATATAACTTTGGCTCCTGCTGATGATGTGGGAGATTGGGTGTATTTTGTTAGCAACGGCAAGAAGAGGTCAAATCTGTAATATTCAAAAGGAAGGGATACAATATATACACAACAAGTCAGTTTTTAGCACTTCACAATATGCACAGCAAGTGCTAACGTTGTAGGTATGTTACTTCAATGGAAAAGATAAAAAATTGTGCCTCATAGGATTGGTTGTGATTACAAGTTCCTGCAGAAATTACCCAAAACTTCTGTCTACAAGTAGTTCTCTAAACGCTTGTTTGTCATTGGTATTACAATAAAGATAAAAAATCTCTTTCCTGTCGGTCTATTGTTTTGATTAAAATGTAGTGAGTTCAGAATTCTAAACCTGATTCACTCAGAAGCCTGATTTGCATATTCTGAGTCTGAGATGCCTATTCCCTTATGAACAATGTTTTTTCTCTCATATTGCATTTTTTAATTTATGTCAGGTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGG</genome_strand>
        <mrna_strand>AGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E721907" ref_strand="+" ref_description="SGN-E721907 [FC15CF02]">
      <seq>gcggccaatcggccgaattgagagtttcatccggaacctctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaacttgggctcatggagacattttccttatgtgtctatcctcttcacagatcctgtcagcttacatattgaagcaagataatctgcatccatcttacaaatcctttctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43918" stop="40344"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43610" g_stop="43271" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="362" r_length="340" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="503" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42499" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="504" r_stop="728" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40699" g_stop="40644" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="729" r_stop="784" r_length="56" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E721907" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43610" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42499"/>
          <exon e_start="40699" e_stop="40644"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCTGTAAGCATCGGTTTTTCTCCTTTTGTGGGACTTAATTTCATATATAAATATACTGAGTAATGATATCCTTCCTTTAATTACAAGCCATATTTCTTAAGCTTTATATGTATAATACATTGTTATTTTTACTACACAATCTCGTTTCGTTCTTGACTATGTAAAACTGCAATTTTATGCATTTTTAGTGCTGCATTGTTGATAAACTGCTATGTCATGAACAAGTAAACGTTTCTTCCTTTGAACATGATGTAAGTTGCGGTGCTTAGAAGTTGAGATTAACCATGCTTGGCTCTAAGCTGATAAATCATATTGATTTGGCTTTGTATTGAAGTTGGCCAAGAAAGAGGTACTTTCCAAGTCAACCATGATAGAGAAGTTTCCCTAAGTGTCCATTGCCTAAATTTTTTATCCCATTTTAGTGGAGAGTGAGGCAACTTAAATAATTGGAGGATGAAGTTGACTTCTTGATTAAAATTCACCCTTATGTTTTGATATGTATCAGATTGATTGTCTTTGGGATTATTCCAATGGAAGTGACAGCTACATAAATGCATGAACTGTGTTCAGTCTATTACCAGTGGTTAACAACTTTGTAAGCTTTATGTTCTAATCGTTGTATGTGCGTGCTCAGTCTCTCCTTTATTGAAGTGGCTGTCTCAGATTAAAAAAGTCATGACTGTCAAAGTGCTGATAGGACACCAACATTTTCAGTAGTCTTATTATGATGAATGTTAAAACTGATAGTCTCATTTGGTAATCTGGTAATATGTTTCAAGAATAGTAGAATTTTCATCTGTCAATCAGGTCAATATCAGATTCTTTATTCATATGTCAATATACAATGAAAGAACTATATCATGACCTTGCATTATGGAGAATGTGAAAAAACATGTTATAGTTTCAGCAGGATTTTATGGATTGTCTTGAGATCTAATCTCCATTCCCTTCTATCAATGTAAGTAGGACCCTGTTTATAAAAATCTTGATGCCATGTGTTTAGTTTAATTAATTAAGGATACTACTGCACCAATTTGCAGCGATAACATGAGATAGTTGACATATTTAGTATCTCCTTTGAAGAAAGCAACACTGCATTTCCCAAGCTCTAGCTTCCTTATACATATCCATGTATCTTATGTGGAAAGGATTTTTATAGAGCAAAGCCTTCAATGAACATACTACTGTCTTTGCATGTGTGTCATCCCGAAGCACAACAATTCAAGGATAATGTACCTCAACAATGAGTAAAAGTAACTGTTTGGGCTGTCGTGCTCCATTAGCCCAAGTGGAATTCCTATATTTAACCAAGCTAGCATTGTCATCCCATATAACTTTGGCTCCTGCTGATGATGTGGGAGATTGGGTGTATTTTGTTAGCAACGGCAAGAAGAGGTCAAATCTGTAATATTCAAAAGGAAGGGATACAATATATACACAACAAGTCAGTTTTTAGCACTTCACAATATGCACAGCAAGTGCTAACGTTGTAGGTATGTTACTTCAATGGAAAAGATAAAAAATTGTGCCTCATAGGATTGGTTGTGATTACAAGTTCCTGCAGAAATTACCCAAAACTTCTGTCTACAAGTAGTTCTCTAAACGCTTGTTTGTCATTGGTATTACAATAAAGATAAAAAATCTCTTTCCTGTCGGTCTATTGTTTTGATTAAAATGTAGTGAGTTCAGAATTCTAAACCTGATTCACTCAGAAGCCTGATTTGCATATTCTGAGTCTGAGATGCCTATTCCCTTATGAACAATGTTTTTTCTCTCATATTGCATTTTTTAATTTATGTCAGGTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCA</genome_strand>
        <mrna_strand>AGTTTCATCCGGAACCTCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAGCTTACATATTGAAGCAAGATAATCTGCATCCATCTTACAAATCCTTTCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E451902" ref_strand="+" ref_description="SGN-E451902 [cSTS-15-C7]">
      <seq>agcattgccggcgctcggctctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatctttagtgcttccgttaaaggattcactattggcgctggcctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtagaaaatcgatgtcctccgcgaagaaagggcaaatggtctcgagcagggatgatgtaattttggcactaaaggaaactctaagatatggtctgttccttggcactttctcaggtacatttgtatcagttgatgaaattgtatccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaacacacagcacacgagcttggcggtttatattcttgtgcgtgccggctgtgttggcatcccgttgtggaataaaaagtaagncggtttgggcgcatatgcaagcctttaacttgggctcacggagacattttccttatgtgtctatcctcttcacagatcctgtccgcttatatattgaagcaagatagtctgcatccatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43781" stop="40361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43481" g_stop="43271" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="352" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42499" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="579" r_length="227" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.968" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40699" g_stop="40661" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="618" r_length="39" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E451902" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E451902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43481" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42499"/>
          <exon e_start="40699" e_stop="40661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTG-CGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAG-CGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCTGTAAGCATCGGTTTTTCTCCTTTTGTGGGACTTAATTTCATATATAAATATACTGAGTAATGATATCCTTCCTTTAATTACAAGCCATATTTCTTAAGCTTTATATGTATAATACATTGTTATTTTTACTACACAATCTCGTTTCGTTCTTGACTATGTAAAACTGCAATTTTATGCATTTTTAGTGCTGCATTGTTGATAAACTGCTATGTCATGAACAAGTAAACGTTTCTTCCTTTGAACATGATGTAAGTTGCGGTGCTTAGAAGTTGAGATTAACCATGCTTGGCTCTAAGCTGATAAATCATATTGATTTGGCTTTGTATTGAAGTTGGCCAAGAAAGAGGTACTTTCCAAGTCAACCATGATAGAGAAGTTTCCCTAAGTGTCCATTGCCTAAATTTTTTATCCCATTTTAGTGGAGAGTGAGGCAACTTAAATAATTGGAGGATGAAGTTGACTTCTTGATTAAAATTCACCCTTATGTTTTGATATGTATCAGATTGATTGTCTTTGGGATTATTCCAATGGAAGTGACAGCTACATAAATGCATGAACTGTGTTCAGTCTATTACCAGTGGTTAACAACTTTGTAAGCTTTATGTTCTAATCGTTGTATGTGCGTGCTCAGTCTCTCCTTTATTGAAGTGGCTGTCTCAGATTAAAAAAGTCATGACTGTCAAAGTGCTGATAGGACACCAACATTTTCAGTAGTCTTATTATGATGAATGTTAAAACTGATAGTCTCATTTGGTAATCTGGTAATATGTTTCAAGAATAGTAGAATTTTCATCTGTCAATCAGGTCAATATCAGATTCTTTATTCATATGTCAATATACAATGAAAGAACTATATCATGACCTTGCATTATGGAGAATGTGAAAAAACATGTTATAGTTTCAGCAGGATTTTATGGATTGTCTTGAGATCTAATCTCCATTCCCTTCTATCAATGTAAGTAGGACCCTGTTTATAAAAATCTTGATGCCATGTGTTTAGTTTAATTAATTAAGGATACTACTGCACCAATTTGCAGCGATAACATGAGATAGTTGACATATTTAGTATCTCCTTTGAAGAAAGCAACACTGCATTTCCCAAGCTCTAGCTTCCTTATACATATCCATGTATCTTATGTGGAAAGGATTTTTATAGAGCAAAGCCTTCAATGAACATACTACTGTCTTTGCATGTGTGTCATCCCGAAGCACAACAATTCAAGGATAATGTACCTCAACAATGAGTAAAAGTAACTGTTTGGGCTGTCGTGCTCCATTAGCCCAAGTGGAATTCCTATATTTAACCAAGCTAGCATTGTCATCCCATATAACTTTGGCTCCTGCTGATGATGTGGGAGATTGGGTGTATTTTGTTAGCAACGGCAAGAAGAGGTCAAATCTGTAATATTCAAAAGGAAGGGATACAATATATACACAACAAGTCAGTTTTTAGCACTTCACAATATGCACAGCAAGTGCTAACGTTGTAGGTATGTTACTTCAATGGAAAAGATAAAAAATTGTGCCTCATAGGATTGGTTGTGATTACAAGTTCCTGCAGAAATTACCCAAAACTTCTGTCTACAAGTAGTTCTCTAAACGCTTGTTTGTCATTGGTATTACAATAAAGATAAAAAATCTCTTTCCTGTCGGTCTATTGTTTTGATTAAAATGTAGTGAGTTCAGAATTCTAAACCTGATTCACTCAGAAGCCTGATTTGCATATTCTGAGTCTGAGATGCCTATTCCCTTATGAACAATGTTTTTTCTCTCATATTGCATTTTTTAATTTATGTCAGGTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATC</genome_strand>
        <mrna_strand>AGCATTGCCGGCGCTCGGCTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATCTTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGCCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGAAAATCGATGTCCTCCGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAATTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCAGGTACATTTGTATCAGTTGATGAAATTGTATCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAACACACAGCACACGAGCTTGGCGGTTTATATTCTTGTGCGTGCCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGNCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCACGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCTTATATATTGAAGCAAGATAGTCTGCATCCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378926" ref_strand="+" ref_description="SGN-E378926 [TUS-3-A3]">
      <seq>tatacttccacttgcccttcgataatctcagagtttcatccggaaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaacttgggctcatggagacattttccttatgtgtctatcctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43941" stop="42209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43641" g_stop="43271" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="371" r_length="371" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="512" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42509" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="727" r_length="215" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E378926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>727</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43641" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATACTTCCACTTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTT</genome_strand>
        <mrna_strand>TATACTTCCACTTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487100" ref_strand="+" ref_description="SGN-E487100 [cSTE-24-A16]">
      <seq>tccacttgcccttcgataatctcaagagtttcattcggaaacgttttccattccatcgccgctatgccgccgtccggcgacggagctgatgtctctgccggtggccgctgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccagttcaggattacgacaagctttggagaataattagtgcttccgttaaaggattcactattggcgctggcctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtagaaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtaattttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtatccgcttggggaggtcatcgaaggacagctaagtggagagtattgctagcgggtgcaattgcagggccatcgttgcttcttactggtagcacacagcacacgagcttggcggtttacattcttgtgcgtgcggctgtgttggcatcccgttgtggaataaaaagtaagcggtttgggcgcatatgcaagcctttaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43935" stop="42249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43635" g_stop="43271" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="506" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.893" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42549" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="681" r_length="175" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E487100" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43635" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGCCCTTCGATAATCTC-AGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACT</genome_strand>
        <mrna_strand>TCCACTTGCCCTTCGATAATCTCAAGAGTTTCATTCGGAAACGTTTTCCATTCC-ATCGCCGCTATGCCGCCGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGCCGCTGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCAGTTCAGGATTACGACAAGCTTTGGAGAATAATTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGCCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGAAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAATTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTATCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGTATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAGCACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574841" ref_strand="+" ref_description="SGN-E574841 [34372]">
      <seq>cggcgatcgactctcccttcctcttcgtcatcttgctactttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatctttagtgcttccgttaaaggattcactattggcgctggcctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtagaaaatcgatgtcctccgcgaagaaagggcaaatggtctcgagcagggatgatgtaattttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtatccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaacacacagcacacgagcttggcggtttaccattcttgtggcgtgcggctgtcttggcattcccgttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43773" stop="42293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43473" g_stop="43271" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="0.96"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="345" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42593" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="479" r_length="134" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E574841" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43473" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCT-CTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTA-CATTCTTGT-GCGTGCGGCTGTGTTGGCA-TCCCGTTGTG</genome_strand>
        <mrna_strand>CGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTACTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATCTTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGCCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGAAAATCGATGTCCTCCGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAATTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTATCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAACACACAGCACACGAGCTTGGCGGTTTACCATTCTTGTGGCGTGCGGCTGTCTTGGCATTCCCGTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E427484" ref_strand="+" ref_description="SGN-E427484 [STM-48-F15]">
      <seq>tccacttgcccttcgataatctcaagagtttcattcggaaacgttttccattccatcgccgctatgccgccgtccggcgacggagctgatgtctctgccggtggccgctgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccagttcaggattacgacaagctttggagaataattagtgcttccgttaaaggattcactattggcgctggcctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtagaaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtaattttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtatccgcttggggaggtcatcgaaggacagctaagtggagagtattgctagcgggtgcaattgcagggccatcgttgcttcttactggtagcacacagcacacgagcttggcgggttacattcttgtgcgtgcggctgtgttggcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43935" stop="42300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43635" g_stop="43271" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="506" r_length="141" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.893" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42600" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="507" r_stop="630" r_length="124" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E427484" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E427484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43635" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTTGCCCTTCGATAATCTC-AGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCC</genome_strand>
        <mrna_strand>TCCACTTGCCCTTCGATAATCTCAAGAGTTTCATTCGGAAACGTTTTCCATTCC-ATCGCCGCTATGCCGCCGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGCCGCTGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCAGTTCAGGATTACGACAAGCTTTGGAGAATAATTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGCCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGAAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAATTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTATCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGTATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAGCACACAGCACACGAGCTTGGCGGGTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E301804" ref_strand="+" ref_description="SGN-E301804 [cLEW-25-D21]">
      <seq>ttgcccttcgataatctcagagtttcatccggaaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaagtggagagcattgctagcgggtgcaattgcagggccatcgttgcttcttactggtaatacacagcacacgagcttggcggtttacattcttgtgcgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43930" stop="42317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43630" g_stop="43271" g_length="360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="360" r_length="360" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="501" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42723" g_stop="42617" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="608" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E301804" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43630" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
          <exon e_start="42723" e_stop="42617"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAGGTATGTCACTGTTTATATTCATACACACACATTTGTATGTATGCATGTGTTAATTAAATTCGGATGTTTTCAGTTTGTTAAATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTACATGCGAAATAGATAATACTAATCTGTTACTTATCTAAGCATATAATTATGTATTGCATTGTTTGTGAGTGTGTTTGTATATATGTGGGCGAAAATCAGAAGTCATTTGTTTGAGAGTTGGTGAGATGATTAACCTAACAGTAGATTAAGCAGAAACTTATTTTAATTTCAGGACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTG</genome_strand>
        <mrna_strand>TTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG...............................................................................................................................................................................................................................................................................................................................GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E248255" ref_strand="+" ref_description="SGN-E248255 [cLEF-55-M23]">
      <seq>ggaaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaagaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatgaaattgtgtccgcttggggaggtcatcgaaggacagctaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43900" stop="42742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43600" g_stop="43271" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="330" r_length="330" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43043" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="471" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E248255" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43600" e_stop="43271"/>
          <exon e_start="43183" e_stop="43043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG</genome_strand>
        <mrna_strand>GGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAAGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203651" ref_strand="+" ref_description="SGN-E203651 [cLEC-15-G19]">
      <seq>aaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtangaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatatggtctgttccttggcactttctctggtacatttgtatcagttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43898" stop="42774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43598" g_stop="43271" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43074" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="438" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E203651" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43598" e_stop="43271"/>
          <exon e_start="43183" e_stop="43074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATG</genome_strand>
        <mrna_strand>AAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTANGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200067" ref_strand="+" ref_description="SGN-E200067 [cLEC-8-A24]">
      <seq>ttccacttgcccttcgataatgtcagagtttcatccggaaacgctttccattccaaccgccgctatgccgctgtccggcgacggagctgatgtctctgccggtggacgatgtacgtgctcttccctcgatgaggaaagcctaatccagaactgccagcattgccggcgatcgactctcccttcctcttcgtcatcttgctctttgcttagcctcgaatcttatccggttcaggattacgacaagctttggagaatatttagtgcttccgttaaaggattcactattggcgctggtctaaaaggtggcctcgctatctttgctgttctctctcggctacgacgtaggaaatcgatgtcctctgcgaagaaagggcaaatggtctcgagcagggatgatgtagttttggcactaaaggaaactctaagatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="43936" stop="42820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43636" g_stop="43271" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43183" g_stop="43120" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="430" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E200067" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43636" e_stop="43271"/>
          <exon e_start="43183" e_stop="43120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAAGTAAAGTTGTTTTAAATCCTCAAAGTTTTTGGATCTAAATTATACCCCGTTGGTTTAAGCTCATTTGAGTATGTTTTAATTTTTTAGGAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATAT</genome_strand>
        <mrna_strand>TTCCACTTGCCCTTCGATAATGTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA.......................................................................................GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435943" ref_strand="+" ref_description="SGN-E435943 [STM-62-E8]">
      <seq>tttttttttggttgataaaaaaaaatgtatttctctttgggatagaagagagtaaaatatagtattgagtctgtgaatctggatctaagctaagaatttcatcaagtgttatagagagaaattttagatttcatgtccaacaaactagatcctacctctttaacatcaaggtgatgaataacattgtaatacaatgctttcgtacctcactacttagcaacagatgtccttcattccgctttgagaacaatcttcatgaactcgtagacgaagtagctaatggaggctgaaggtaacacctgtagtaaactagggatcagtcctgcatatagagctggaacacctccctgttcaacaatcttcgcacatgttgccaacgcactcagtttagatgcccggccttgtaattgaagatgtcttctaatgacctcaaatggataagttgcggcttcagcacaagcaccagcaatagcaccatgaagtaagggcctcataagtcccaactccagctgggcaaaagcattgagctctgctccctgaatcttcatatactctattctttttctgccttcaggtgaacgccaataagctgattttaatatgtcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="44375" stop="45963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44681" g_stop="44954" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="292" r_length="271" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44955" i_stop="45342" i_length="388">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.984" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45343" g_stop="45663" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="610" r_length="318" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E435943" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E435943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44681" e_stop="44954"/>
          <exon e_start="45343" e_stop="45663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGTTTTTCTTTTGGGGATAGAAGAGAGTAAAATATAGTATCGAGTTTGTGAATCTGGATCTAAGCTAAGAATTTTTCATCAAGTGTTAATAGAGAGAAATTTTAGATTTCATGTCCAACAAACTAGATCCTACCTCTTTAACATCAAGGTGATGAATAACATTGTAATACAATGCTTTTGTACCTCACTACTTAGCAACAGATGTCCTTCATTCCGCTTTGAGAACAATCTTCATGAACTCGTAGACGAAGTAGCTTATGGAGGCAGAAGGTAACACCTGAAAATTCAGAACATGAAAATTGAGAATGGGAAAGTCTTGATAGTTAAAGAGATTTGAAAAGAAGAAGATGAATTCTAGAGATATACTTGAAATTTCGAATACTATAATCATATACATATGCAAGTCAATTGAACTGAAATACGACAATCCCTCTAGGTCTGAATGAAGTACAATTGCTGCTATTTATAGGAAGAGTGAAAAGGAAGGGAAAGGGTGAAAAGGAAGAATTTAGAGATGCCACCATCCCAGAATCTTGTGAACTCCATGCATATTGAGGAGCAGAACGGTTGGGAAGAACATTGTGTTCAGTTTCGGAGATTAAAATGAGTCCTTTTCCAATTAAAAAGTAATCTCAAACATAATGATATGGTTAAACAGGTACTGGTACCTGTAGTAAACTAGGGATTAGTCCTGCATATAGAGCTGGAACACCTCCCTGTTCAACAATCTTCGCACATGTTGCCAACGCACTCAGTTTAGATGCTCGGCCTTGCAATTGAAGATGTCTTCTAATGACCTCAAATGGATAAGTTGCGGCTTCAGCACAAGCACCAGCAATAGCACCATGAAGTAAGGTCCTCATAGGTCCCAACTCAAGCTGGTCAAAAGCATTGAGCTCTGCTCCCTGATTCTTCATATACTCTATTCTTTTTCTGCCTTCAGGTGAATGCAAATAAGCTGATTTTAATATGTCATATA</genome_strand>
        <mrna_strand>AAAATGTATTTCTCTTTGGGATAGAAGAGAGTAAAATATAGTATTGAGTCTGTGAATCTGGATCTAAGCTAAGAATTT--CATCAAGTGTT-ATAGAGAGAAATTTTAGATTTCATGTCCAACAAACTAGATCCTACCTCTTTAACATCAAGGTGATGAATAACATTGTAATACAATGCTTTCGTACCTCACTACTTAGCAACAGATGTCCTTCATTCCGCTTTGAGAACAATCTTCATGAACTCGTAGACGAAGTAGCTAATGGAGGCTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................GTA---ACACCTGTAGTAAACTAGGGATCAGTCCTGCATATAGAGCTGGAACACCTCCCTGTTCAACAATCTTCGCACATGTTGCCAACGCACTCAGTTTAGATGCCCGGCCTTGTAATTGAAGATGTCTTCTAATGACCTCAAATGGATAAGTTGCGGCTTCAGCACAAGCACCAGCAATAGCACCATGAAGTAAGGGCCTCATAAGTCCCAACTCCAGCTGGGCAAAAGCATTGAGCTCTGCTCCCTGAATCTTCATATACTCTATTCTTTTTCTGCCTTCAGGTGAACGCCAATAAGCTGATTTTAATATGTCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E324361" ref_strand="+" ref_description="SGN-E324361 [cTOC-6-O3]">
      <seq>aattgcagttactcaaggcttgagaggcttttggaaagggaacttggttaatatacttcgtactgctccttttaaggcagttaatttttgtgcttttgacacatacagaaagcaactcctaagattatcaggaaatgaagaaactactaacatcgagcggtttgttgctggtgctgcagctggtgtgactgctactgttatgtgcttaccactggacactatccggaccaagttagtggcacggggtggagaagccttgggtggtgtggttggagcttttcaacatgtgatcagaactgaaggattcttctctctttataagggactagtaccctccattttgagtatggccccagcagcggctgttttctatggtgtatatgacatattaaaatcagcttatttgcattcacctgaaggcagaaaaagaatagagtatatgaagaatcagggagcagagctcaatgcttttgaccagcttgagttgggacctatgaggaccttacttcatggtgctattgctggtgcttgtgctgaagccgcaacttatccatttgaggtcatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="48196" stop="45175"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47896" g_stop="47677" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47676" i_stop="45821" i_length="1856">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45820" g_stop="45475" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="566" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E324361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47896" e_stop="47677"/>
          <exon e_start="45820" e_stop="45475"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACTGTAAGTCATGAGATGGAAATTTGCATTTTTTTAAGCCTTTTGATATTTCTAATTTTCACTAAGCCCATCTAAGATCGTGTATAAACACATAAAACTGTCAGTGCATTAATTTTACATTTTGATCTAGCTGTTGACAGAACTGTCAAAAGAACTTCTTTTCTATGTAATTGTTTTCTTTACTAGTACATTTCTAATCCACAAATAGCTAGAGAAAGGAAAATAAGAGAGCTCTTTTCTCTTCTTTAGAAAACATCCTTTATGTTGCTCATGGTTCTTCCCTTCCTTCAGTACAATTTCTCACCTTCTAGCTGAATCCAATAAGGAAGGCTGCAAGTACAAGTGAAATCCGAAAATAGGACTAAAATTATAAAATTAACATATGGAGTAAAAACAGAGGTATTATGTCACATAATCTTATGGTTTAAGTTCTGCAAAATACTAGCTGCTTGTCAGTTTGACTTGTGTCATTCATTGATTATAGGTTTTTCTGGTAGAAAGGAGATATCTTTTTGTTAGACTTTGATTTGCATCGGAAATTGCACAATCAAAAAACAAGAGATTCTTTATATGAAAAAGTTATGATTTGAAGGAAAGAAGGTTGATGTTTTGGATCCCTTATCTTCAAGTGTCAATAATCATCTACCCATCCCATTTTGATCCATAACTGTCCTATTTCTCGTATATTTTACAGTTGCTGATTGAAAACATGATCCATTTGGTGGTTACGCTGTTTCTAATTCATCTGTTGATGAGTTCTAACATTTCAAGCAGGTTTTGCCTCTAAACCTTTTTTGTTTTTCTAGTATTTCTTGGTGAGTTGTGGAAGGAGATAGTGGTGTAACAAGGGGAAAGGAAAGCCAGCTAGTGGCAGAAAGGACCAGGGAGGTTGGTCCTTATTGAAAAAAAAAGGAATGGGGAGGTGGGACAGTGCTTGAGTGAAAGCCTTGGGCTGTCGACAAAGAGGTTGATGATTAATAAACTCTTATCAACTTCCTCTGGCTTTTAAGCTTCTCGTCCTCAAGCAAGAACACATCATTGTGAATCCTGACTAGAAGATCCTTAAGCACATCCTTTTTTGTTTTTGCTATTTATTAATATGTATAAGGTACCAAAAGATGGGAAAACTTTTGGAATACTGAATAAAATAAAACTAAGAATCTTAATGTGTCATTTTGGATTAGAATTAAACTGACTTAGTCGAGAGAAGTTTAGGATTTAGATTTTTTTTTTCTAAAACAGATAATAGAAGGGTCCCAACTGAAGATGACATACATGGCAGGGTGAAGGAGCGAAATGCCCTGTATAAAATTTAGTACAGCAGCTACTGATAAAGAAGAAAGAAGAAAGGATTAGTACAACAGCTTTGTCCAAGAGAAAAACAAGGAATGAGATGGAAGAATAGAGCAATTTTAGCTTCATCAGGGAACTAGCAGCAAAATGGGTACTGGACAATGTCTGTTATTTTTAATATGGACCAAACTAGTTTTTCCCTCATCATTCAGGTTTGATACATGCTCCTAATATAACATAGTGCATGGAATGATATTCTGTCAACCATTAGCATCAAAGCCCTGGTTTTAGTACATAGTTTTTAGGTCTCTGATTTGAATATGTAAGAAGTTGTGTTGAAGTAGTTTGCATTTCCTCTTCTGTAAGAATGTGTAACAATCTTTTGTTTTTAATAAGTATGTATTTATAACGTGTTCACATCAGCTGATGTCCTTATTATTGATTTTTCCTTTTTTTCAGAAATGTCCATATTAGATTTGATTATCCTCCTTATGATTGGGGAAGTTGATTTTCTCTGGCTTCTGCTTTGTTATTTCCTGTGTTGCTGATAATTTAAAACCTTTCAGATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</genome_strand>
        <mrna_strand>AATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321858" ref_strand="+" ref_description="SGN-E321858 [cTOB-29-G7]">
      <seq>tttgacattttcccttccattatcccattgaatgccatcaaaattctcctcagcttcactatactgtagaatttagaatgactggagttcatactatttggtttaaacacttagaaagtctcacacttgtagaaaatccagatacaattttgttttctggtggattatttattgaaccgttgattccttcttcaattacatctagttttctaaaaatatcatcaattgatgattccagtgagttacattctcccatttctcgtcgtagtggaccaattttccggcgagaaaaaaagagtgttcgtgccggtattgggggtaatttcttgtgtttgagtttgtcacttaagaagaatactgatgttgttgggaattccagtgaatgtttgttgagtaatggagacgagagtccaaaggtggaagagtctagtgtcggcgatggggttgtgaagaagcgaaatattgggttacggggacgtggtgcaatgaacaccagcaaacatttgtgggctggagcagttgctgcaatggtatcaagaactgttgttgctccacttgaaagactaaagctggaatatatagttcgtggtgaacagaagcacctcttggagctcatcaaaacaattgcagttactcaaggcttgagaggcttttggaaagggaacttggttaatatacttcgtactgctccttttaaggcagttaatttttgtgcttttgacacatacagaaagcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="52726" stop="47482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52426" g_stop="51889" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47980" g_stop="47782" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="737" r_length="199" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E321858" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>737</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52426" e_stop="51889"/>
          <exon e_start="47980" e_stop="47782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAGGTTAGTGCTTTTCTGCCGTATCTGCGTTATTGATTTCTTTACTTGTCGTTTATCCTTTTGGTATATACTAACAAGGTTAGTGCTTTTTGTCCAGTATCTATGTTGTTGATTTCTTTTCTTGTTTATCCTTTTAGTAAATACTTCCATTTGCTGCACTTAAGTAGCAGTAAGGACCGCGGACTCTCTATATTCCCAGACCGCACTCGTGGGATTACACCGAGCTGTTGTTGTCGTACACTGACAGTAGTTTGAACTTACTCGGAATATCAAATTAGTTATTGGGGATCTGTTGTTGATATCCTAGTATCACTTTGTTTTTTAGTTGCACGGACTCTTCACTTTTGATGCCGCACCCGTCTTGGATTCTTCAAAAATACACTACTTTTGGCGAATCCGACCGCACTCGTTGGGATTTTTGAAGAGTCCGAGCAACACAGCTTTGTTTTATTAGTGCCATTTGGCAAGTTGTGATTGAATTTCGAGATGTAATATATAGGAGGTATAAGGGAAATAACGAGCTACTTCATGTAGAGGAGAGAGTTTTCAATATATCATTATCTTCTTTGTGACGCAGAATAATGACTCTGCCAAATTTTGGATTGAAGAAAAATAATTACTGCAGCTTATGATTTTTGCTTATTGATGTTATTATTATCTTTGGGTCATCATAATTTTCTTAGTCTTAAGAGGGGAATTTTTCCAAATTTGAGTGGAGTGACATGATACAAGGAAATCCATGTTAGGGAGATTAAAGATTGAAAAGATCGAATGTAACAGTTACAACTCACACCTAGTCAAGTACACCCATATAAGGGAGAAGTAGTTAATTTTGTTGACAATGAAGGGGCGAATAACTATATATAGAGTTATCCTGCTTTGGGGAAAATTAGATCTCGAAACCCAAGTTTTTTAACACCCCCTACCTTGCCACTTTGACCTCATTACTAATCTGGTAGGAGTCTTGATAGTTTGAACAGTGGATATGGAATTCATTCATAATCTAGCTCATGGTTTAGGCATTCAAACAAATTGAAAGACTAAGCTGAGTTGTCATTTTACTGAAATTAGATCTAGTGTTTGCTAGGAGCCTTTTGGTTAGACACTTAATTGTGAAGGAAATTAATGTGAGGTTTCAAGTTGTTTTATAGAATTCCAAAGTAACCTAAAAAGACAAATTAATTACATGGTTTTGTTGGAAGAAAATGAATCTGAACATAATGGAATGGGTGTAGAGGATATATATATAGCCAACACAACTGGTTTGGTCAATGCATAGTTGATTGATGATTGATTACTTTTGGTGTTCGCTGTGTAGAGTTGTTGCATTATGCATAACTTCATATCTCTCTATATATATATATTGAGTAACTCCATAATTGTTTGGGGTCTAGTTGGCAGAACAATGACAAATGCTTTGTAGGAGGTGGAGATAAGAAACAAGATACGCTGCAAACATAGTATTACTTGTCAGTCTCCTATTTAACAGAGTGGATTTTCATCATAGCCTGGAGGAATTATTACATAGATGACTTTTTTTATTGCTTCCTTGCACTTGATCTCCTATGTAAATACTTAAACTGTGGGGGAATTTCCCATACTGCCTTTGAGGCAAAACTGCTTGCCGTGGAAGTTTACCTTCTTTCTTCCTTGTGCACATTTCAAAAGCAAGTACAATAATCAGGGAGCTAGATGGTGTGTTCTCTTAACAAAATATAAGGAAAAAGTTTAAAATGCACGAGGGCATTATTTGATCCACTTAGGATTCCGTTTTCTAGTCTATTCTTGCTGGTAACTCTTAAGTGGCACCTTCGGAGGTTTTCCCCATGGCGCAATGGGGTTGCTGTGCATTCATATCTTCTGGCCTCATAAATAACTACAGAAAAACCATGCGTGAACAGAAAAAGCAACTTAAAATTTTCATAACTATAATGCTATAAAAGAATGTATAAACTGGCTTATTTGTATTGATGGCAGTTGTCTGTCTCTCTTGGTCTTGGTTGTCTGTGAAAGCTTCCAGACCTTCTCAGTTGACCCTATCTACAACACCGCCATATCTTTAGTTGCATCTGAAAGATGGAATTCTAAGAAACAAGGAATGGACAATGAAGTTTCAAATATATGATAGCAAAAAAGCTGTAAATATGGATGGATATGAGGGAGAAAGGGTTTGATTTTCATAACAGAAAAACAATAATGCAGAGAAGACTGAATTTTCAATATAGGATATGAATAAAATATGGAGGAAATGCCATGAAAGGTGATGGTTTCCGTTAATTGTTTTCCAAATGTATAAGTGCTGGGAAATGGATGAGTCTTTGTTGGAGATTTATCCTGGTATTCTTCTACCTTGGGGTAAGAAGCTGTAATGGTTAATCAAGAGAGATTAATAACAGTAAAAAGAATCTGAGGCTCTGTCAAACAAGTCACACTGTGGACATAGTTACTTTAGATAATCCCATATCACTATGCTGCTGTCACGAATGAAAGTGTCATGGGTCTAGTTATCCTTCTCTTGTTGTTTTGAGGTAAAAGAATGTCCAATGTAACATTAGGATATGGTGTGGTGTCTGGTCTTACATTCCTTATTAGATATGGTAAACCCCACCACTTAAGCACCACAATTCAGGAGCAAACTGTGGCCCTTCCCCTATTTTGTTCCCTTGGTGACTCGCAACCCCAACCTCATTGAGTTAGTGGGCCTCTTTCACTAGGATATCCCTCCTTTGTCTTGGCCTTCTTTTCAGAATCAAAGGCCTATTTTCTGTTAAGTCATAAATCAATGTTTTTAAGGCATGCACGGTCATCCATTTTGCTCAAGCTTTGAACCTTTGTCTCACTTTTCAGTTACTCTACATTAGATGAATATTGTGTTTTTTCCAGATCTCCATCAAATCAACGTCCATCTTCTTAAGCCAAAAGCATCATGTTTTTCTTTGATACACTTTCTATACTCCATTCCAACATAGAGATGAATCTGAAGTAAGCTTTTACCCAAAAAGTTCGACCTGTTACTCATCAAGTCATCCATATTTCTACAATGCTATGACCTTTTAAAATCATTGTTGTTTAGTGTTATTTCCTTTTTTTTTGTTTTTGCCGGAGGGCAGGAGAGAGGTTCTTAAATCTTTTTAAAAAGTCAAACAAGACATTCATATTGAAAAGAGGAAGATTACGTTTTGACCTAATACAATTTTTAATCTGAATACTTCCAATAAAATCCTTTAATTTGGATTAAGCCTCTAGATATTCCTTATGCTCAAGTTTTTAACTTATTCTTAATCATACTGTTTCTGAATAGAAAGAAGTTAAATTTTGTATTCCCCTTGTCCCCCTCCTTTTGGTAAGTAAATATATGAAGCTTACAAATTGCCTTAATCATCTTTAGGAGTTCTCTGCAGTTTGCACCTAGATGAAATTTTGGAATGGTTTTTATTCTGAAACCATCGTGGGAGCTTCATATTGAGGAGAGAGAGGGTTGGTCCATCATTTTTATTTGGAATACGAGCTTGTCCATCCATTCCTGGTTAATTTACTTCTTCATTCTTTCTGAGCCTCTGGACACTTTTTTCAAGTCTCCATATGGTTCTGATTCCCTGTTCTTGTTCTTTGTTTCTTGTCCTCTCTGATATTGTGATGGCCAGAGTCGACAAGTAATTGTATAAACTAACACAATAGACATGTTTACTTCTTTTTGATTATTTGACGTTTGTTAGTAGTTAAAATAGTAAAATTGGTAAAAGATACAATGTACCAATTTCCAAAAAAAAAAAAAAAAAGGGTAAAAGATAGTTTAGTTTATCCTTCTATATACCTTCTAAAGTAGTTAACTTCACATTGATCTTGAACTCAAGTTCTGCTTACAATTACCTTTTGCTTCAACTCTGTTTGAATAAATCTTGTTTTTGCAGAACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAA</genome_strand>
        <mrna_strand>TTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E459637" ref_strand="+" ref_description="SGN-E459637 [cPRO-28-B3]">
      <seq>cggcgacataagcaaaggtgactttgccattttcccttccattatctcattgaatgcgagcaaaattcttctcatcttcactatactgtagaatttagaatgactggagttcataatatttggtttaaacacttagaaagtctcactcttgtagaaaatccagatacaattttgttttctggtggattatttattgaaccattgattccttcttcaattacaaataattttctaaaaatatcatcaattgatgattccagtgagttacattctcccttttctcgtcgtactggaccaattttccggcgagaaaaaaagagtgttcgtgccggttttgggggtaatttcttgtgtttgagtttgtcagttaagaagaatactgaggttgttgggaattccagtgaatgtttgttgagtaatggagatgacagttcagaggtggaagagtctagtgacggcaatggggatgtgagaaagcgaaatattgggttacggggacgtggtgcaatgaacaccagcaaacatttgtgggctggagcagttgctgcaatggtgtcaagaactgttgttgctccacttgaaagattaaagctggaatatatagttcgtggtgaacagaagcacctgtcggagctcatcaaaacaattgcagctactcaaggcgtgagaggcttttngaaagggaatttggtncatattcttcgtactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="52748" stop="47529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52448" g_stop="51889" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47980" g_stop="47829" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="712" r_length="152" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E459637" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E459637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52448" e_stop="51889"/>
          <exon e_start="47980" e_stop="47829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGACACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAGGTTAGTGCTTTTCTGCCGTATCTGCGTTATTGATTTCTTTACTTGTCGTTTATCCTTTTGGTATATACTAACAAGGTTAGTGCTTTTTGTCCAGTATCTATGTTGTTGATTTCTTTTCTTGTTTATCCTTTTAGTAAATACTTCCATTTGCTGCACTTAAGTAGCAGTAAGGACCGCGGACTCTCTATATTCCCAGACCGCACTCGTGGGATTACACCGAGCTGTTGTTGTCGTACACTGACAGTAGTTTGAACTTACTCGGAATATCAAATTAGTTATTGGGGATCTGTTGTTGATATCCTAGTATCACTTTGTTTTTTAGTTGCACGGACTCTTCACTTTTGATGCCGCACCCGTCTTGGATTCTTCAAAAATACACTACTTTTGGCGAATCCGACCGCACTCGTTGGGATTTTTGAAGAGTCCGAGCAACACAGCTTTGTTTTATTAGTGCCATTTGGCAAGTTGTGATTGAATTTCGAGATGTAATATATAGGAGGTATAAGGGAAATAACGAGCTACTTCATGTAGAGGAGAGAGTTTTCAATATATCATTATCTTCTTTGTGACGCAGAATAATGACTCTGCCAAATTTTGGATTGAAGAAAAATAATTACTGCAGCTTATGATTTTTGCTTATTGATGTTATTATTATCTTTGGGTCATCATAATTTTCTTAGTCTTAAGAGGGGAATTTTTCCAAATTTGAGTGGAGTGACATGATACAAGGAAATCCATGTTAGGGAGATTAAAGATTGAAAAGATCGAATGTAACAGTTACAACTCACACCTAGTCAAGTACACCCATATAAGGGAGAAGTAGTTAATTTTGTTGACAATGAAGGGGCGAATAACTATATATAGAGTTATCCTGCTTTGGGGAAAATTAGATCTCGAAACCCAAGTTTTTTAACACCCCCTACCTTGCCACTTTGACCTCATTACTAATCTGGTAGGAGTCTTGATAGTTTGAACAGTGGATATGGAATTCATTCATAATCTAGCTCATGGTTTAGGCATTCAAACAAATTGAAAGACTAAGCTGAGTTGTCATTTTACTGAAATTAGATCTAGTGTTTGCTAGGAGCCTTTTGGTTAGACACTTAATTGTGAAGGAAATTAATGTGAGGTTTCAAGTTGTTTTATAGAATTCCAAAGTAACCTAAAAAGACAAATTAATTACATGGTTTTGTTGGAAGAAAATGAATCTGAACATAATGGAATGGGTGTAGAGGATATATATATAGCCAACACAACTGGTTTGGTCAATGCATAGTTGATTGATGATTGATTACTTTTGGTGTTCGCTGTGTAGAGTTGTTGCATTATGCATAACTTCATATCTCTCTATATATATATATTGAGTAACTCCATAATTGTTTGGGGTCTAGTTGGCAGAACAATGACAAATGCTTTGTAGGAGGTGGAGATAAGAAACAAGATACGCTGCAAACATAGTATTACTTGTCAGTCTCCTATTTAACAGAGTGGATTTTCATCATAGCCTGGAGGAATTATTACATAGATGACTTTTTTTATTGCTTCCTTGCACTTGATCTCCTATGTAAATACTTAAACTGTGGGGGAATTTCCCATACTGCCTTTGAGGCAAAACTGCTTGCCGTGGAAGTTTACCTTCTTTCTTCCTTGTGCACATTTCAAAAGCAAGTACAATAATCAGGGAGCTAGATGGTGTGTTCTCTTAACAAAATATAAGGAAAAAGTTTAAAATGCACGAGGGCATTATTTGATCCACTTAGGATTCCGTTTTCTAGTCTATTCTTGCTGGTAACTCTTAAGTGGCACCTTCGGAGGTTTTCCCCATGGCGCAATGGGGTTGCTGTGCATTCATATCTTCTGGCCTCATAAATAACTACAGAAAAACCATGCGTGAACAGAAAAAGCAACTTAAAATTTTCATAACTATAATGCTATAAAAGAATGTATAAACTGGCTTATTTGTATTGATGGCAGTTGTCTGTCTCTCTTGGTCTTGGTTGTCTGTGAAAGCTTCCAGACCTTCTCAGTTGACCCTATCTACAACACCGCCATATCTTTAGTTGCATCTGAAAGATGGAATTCTAAGAAACAAGGAATGGACAATGAAGTTTCAAATATATGATAGCAAAAAAGCTGTAAATATGGATGGATATGAGGGAGAAAGGGTTTGATTTTCATAACAGAAAAACAATAATGCAGAGAAGACTGAATTTTCAATATAGGATATGAATAAAATATGGAGGAAATGCCATGAAAGGTGATGGTTTCCGTTAATTGTTTTCCAAATGTATAAGTGCTGGGAAATGGATGAGTCTTTGTTGGAGATTTATCCTGGTATTCTTCTACCTTGGGGTAAGAAGCTGTAATGGTTAATCAAGAGAGATTAATAACAGTAAAAAGAATCTGAGGCTCTGTCAAACAAGTCACACTGTGGACATAGTTACTTTAGATAATCCCATATCACTATGCTGCTGTCACGAATGAAAGTGTCATGGGTCTAGTTATCCTTCTCTTGTTGTTTTGAGGTAAAAGAATGTCCAATGTAACATTAGGATATGGTGTGGTGTCTGGTCTTACATTCCTTATTAGATATGGTAAACCCCACCACTTAAGCACCACAATTCAGGAGCAAACTGTGGCCCTTCCCCTATTTTGTTCCCTTGGTGACTCGCAACCCCAACCTCATTGAGTTAGTGGGCCTCTTTCACTAGGATATCCCTCCTTTGTCTTGGCCTTCTTTTCAGAATCAAAGGCCTATTTTCTGTTAAGTCATAAATCAATGTTTTTAAGGCATGCACGGTCATCCATTTTGCTCAAGCTTTGAACCTTTGTCTCACTTTTCAGTTACTCTACATTAGATGAATATTGTGTTTTTTCCAGATCTCCATCAAATCAACGTCCATCTTCTTAAGCCAAAAGCATCATGTTTTTCTTTGATACACTTTCTATACTCCATTCCAACATAGAGATGAATCTGAAGTAAGCTTTTACCCAAAAAGTTCGACCTGTTACTCATCAAGTCATCCATATTTCTACAATGCTATGACCTTTTAAAATCATTGTTGTTTAGTGTTATTTCCTTTTTTTTTGTTTTTGCCGGAGGGCAGGAGAGAGGTTCTTAAATCTTTTTAAAAAGTCAAACAAGACATTCATATTGAAAAGAGGAAGATTACGTTTTGACCTAATACAATTTTTAATCTGAATACTTCCAATAAAATCCTTTAATTTGGATTAAGCCTCTAGATATTCCTTATGCTCAAGTTTTTAACTTATTCTTAATCATACTGTTTCTGAATAGAAAGAAGTTAAATTTTGTATTCCCCTTGTCCCCCTCCTTTTGGTAAGTAAATATATGAAGCTTACAAATTGCCTTAATCATCTTTAGGAGTTCTCTGCAGTTTGCACCTAGATGAAATTTTGGAATGGTTTTTATTCTGAAACCATCGTGGGAGCTTCATATTGAGGAGAGAGAGGGTTGGTCCATCATTTTTATTTGGAATACGAGCTTGTCCATCCATTCCTGGTTAATTTACTTCTTCATTCTTTCTGAGCCTCTGGACACTTTTTTCAAGTCTCCATATGGTTCTGATTCCCTGTTCTTGTTCTTTGTTTCTTGTCCTCTCTGATATTGTGATGGCCAGAGTCGACAAGTAATTGTATAAACTAACACAATAGACATGTTTACTTCTTTTTGATTATTTGACGTTTGTTAGTAGTTAAAATAGTAAAATTGGTAAAAGATACAATGTACCAATTTCCAAAAAAAAAAAAAAAAAGGGTAAAAGATAGTTTAGTTTATCCTTCTATATACCTTCTAAAGTAGTTAACTTCACATTGATCTTGAACTCAAGTTCTGCTTACAATTACCTTTTGCTTCAACTCTGTTTGAATAAATCTTGTTTTTGCAGAACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTC</genome_strand>
        <mrna_strand>CGGCGACATAAGCAAAGGTGACTTTGCCATTTTCCCTTCCATTATCTCATTGAATGCGAGCAAAATTCTTCTCATCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATAATATTTGGTTTAAACACTTAGAAAGTCTCACTCTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCATTGATTCCTTCTTCAATTACAAATAATTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCTTTTCTCGTCGTACTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTTTTGGGGGTAATTTCTTGTGTTTGAGTTTGTCAGTTAAGAAGAATACTGAGGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGATGACAGTTCAGAGGTGGAAGAGTCTAGTGACGGCAATGGGGATGTGAGAAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTGTTGCTCCACTTGAAAGATTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTGTCGGAGCTCATCAAAACAATTGCAGCTACTCAAGGCGTGAGAGGCTTTTNGAAAGGGAATTTGGTNCATATTCTTCGTACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321995" ref_strand="+" ref_description="SGN-E321995 [cTOB-29-H7]">
      <seq>tttgacattttcccttccattatcccattgaatgccatcaaaattctcctcagcttcactatactgtagaatttagaatgactggagttcatactatttggtttaaacacttagaaagtctcacacttgtagaaaatccagatacaattttgttttctggtggattatttattgaaccgttgattccttcttcaattacatctagttttctaaaaatatcatcaattgatgattccagtgagttacattctcccatttctcgtcgtagtggaccaattttccggcgagaaaaaaagagtgttcgtgccggtattgggggtaatttcttgtgtttgagtttgtcacttaagaagaatactgatgttgttgggaattccagtgaatgtttgttgagtaatggagacgagagtccaaaggtggaagagtctagtgtcggcgatggggttgtgaagaagcgaaatattgggttacggggacgtggtgcaatgaacaccagcaaacatttgtgggctggagcagttgctgcaatggtatcaagaactgttgttgctccacttgaaagactaaagctggaatatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="52726" stop="47639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52426" g_stop="51889" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47980" g_stop="47939" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="580" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E321995" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52426" e_stop="51889"/>
          <exon e_start="47980" e_stop="47939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAGGTTAGTGCTTTTCTGCCGTATCTGCGTTATTGATTTCTTTACTTGTCGTTTATCCTTTTGGTATATACTAACAAGGTTAGTGCTTTTTGTCCAGTATCTATGTTGTTGATTTCTTTTCTTGTTTATCCTTTTAGTAAATACTTCCATTTGCTGCACTTAAGTAGCAGTAAGGACCGCGGACTCTCTATATTCCCAGACCGCACTCGTGGGATTACACCGAGCTGTTGTTGTCGTACACTGACAGTAGTTTGAACTTACTCGGAATATCAAATTAGTTATTGGGGATCTGTTGTTGATATCCTAGTATCACTTTGTTTTTTAGTTGCACGGACTCTTCACTTTTGATGCCGCACCCGTCTTGGATTCTTCAAAAATACACTACTTTTGGCGAATCCGACCGCACTCGTTGGGATTTTTGAAGAGTCCGAGCAACACAGCTTTGTTTTATTAGTGCCATTTGGCAAGTTGTGATTGAATTTCGAGATGTAATATATAGGAGGTATAAGGGAAATAACGAGCTACTTCATGTAGAGGAGAGAGTTTTCAATATATCATTATCTTCTTTGTGACGCAGAATAATGACTCTGCCAAATTTTGGATTGAAGAAAAATAATTACTGCAGCTTATGATTTTTGCTTATTGATGTTATTATTATCTTTGGGTCATCATAATTTTCTTAGTCTTAAGAGGGGAATTTTTCCAAATTTGAGTGGAGTGACATGATACAAGGAAATCCATGTTAGGGAGATTAAAGATTGAAAAGATCGAATGTAACAGTTACAACTCACACCTAGTCAAGTACACCCATATAAGGGAGAAGTAGTTAATTTTGTTGACAATGAAGGGGCGAATAACTATATATAGAGTTATCCTGCTTTGGGGAAAATTAGATCTCGAAACCCAAGTTTTTTAACACCCCCTACCTTGCCACTTTGACCTCATTACTAATCTGGTAGGAGTCTTGATAGTTTGAACAGTGGATATGGAATTCATTCATAATCTAGCTCATGGTTTAGGCATTCAAACAAATTGAAAGACTAAGCTGAGTTGTCATTTTACTGAAATTAGATCTAGTGTTTGCTAGGAGCCTTTTGGTTAGACACTTAATTGTGAAGGAAATTAATGTGAGGTTTCAAGTTGTTTTATAGAATTCCAAAGTAACCTAAAAAGACAAATTAATTACATGGTTTTGTTGGAAGAAAATGAATCTGAACATAATGGAATGGGTGTAGAGGATATATATATAGCCAACACAACTGGTTTGGTCAATGCATAGTTGATTGATGATTGATTACTTTTGGTGTTCGCTGTGTAGAGTTGTTGCATTATGCATAACTTCATATCTCTCTATATATATATATTGAGTAACTCCATAATTGTTTGGGGTCTAGTTGGCAGAACAATGACAAATGCTTTGTAGGAGGTGGAGATAAGAAACAAGATACGCTGCAAACATAGTATTACTTGTCAGTCTCCTATTTAACAGAGTGGATTTTCATCATAGCCTGGAGGAATTATTACATAGATGACTTTTTTTATTGCTTCCTTGCACTTGATCTCCTATGTAAATACTTAAACTGTGGGGGAATTTCCCATACTGCCTTTGAGGCAAAACTGCTTGCCGTGGAAGTTTACCTTCTTTCTTCCTTGTGCACATTTCAAAAGCAAGTACAATAATCAGGGAGCTAGATGGTGTGTTCTCTTAACAAAATATAAGGAAAAAGTTTAAAATGCACGAGGGCATTATTTGATCCACTTAGGATTCCGTTTTCTAGTCTATTCTTGCTGGTAACTCTTAAGTGGCACCTTCGGAGGTTTTCCCCATGGCGCAATGGGGTTGCTGTGCATTCATATCTTCTGGCCTCATAAATAACTACAGAAAAACCATGCGTGAACAGAAAAAGCAACTTAAAATTTTCATAACTATAATGCTATAAAAGAATGTATAAACTGGCTTATTTGTATTGATGGCAGTTGTCTGTCTCTCTTGGTCTTGGTTGTCTGTGAAAGCTTCCAGACCTTCTCAGTTGACCCTATCTACAACACCGCCATATCTTTAGTTGCATCTGAAAGATGGAATTCTAAGAAACAAGGAATGGACAATGAAGTTTCAAATATATGATAGCAAAAAAGCTGTAAATATGGATGGATATGAGGGAGAAAGGGTTTGATTTTCATAACAGAAAAACAATAATGCAGAGAAGACTGAATTTTCAATATAGGATATGAATAAAATATGGAGGAAATGCCATGAAAGGTGATGGTTTCCGTTAATTGTTTTCCAAATGTATAAGTGCTGGGAAATGGATGAGTCTTTGTTGGAGATTTATCCTGGTATTCTTCTACCTTGGGGTAAGAAGCTGTAATGGTTAATCAAGAGAGATTAATAACAGTAAAAAGAATCTGAGGCTCTGTCAAACAAGTCACACTGTGGACATAGTTACTTTAGATAATCCCATATCACTATGCTGCTGTCACGAATGAAAGTGTCATGGGTCTAGTTATCCTTCTCTTGTTGTTTTGAGGTAAAAGAATGTCCAATGTAACATTAGGATATGGTGTGGTGTCTGGTCTTACATTCCTTATTAGATATGGTAAACCCCACCACTTAAGCACCACAATTCAGGAGCAAACTGTGGCCCTTCCCCTATTTTGTTCCCTTGGTGACTCGCAACCCCAACCTCATTGAGTTAGTGGGCCTCTTTCACTAGGATATCCCTCCTTTGTCTTGGCCTTCTTTTCAGAATCAAAGGCCTATTTTCTGTTAAGTCATAAATCAATGTTTTTAAGGCATGCACGGTCATCCATTTTGCTCAAGCTTTGAACCTTTGTCTCACTTTTCAGTTACTCTACATTAGATGAATATTGTGTTTTTTCCAGATCTCCATCAAATCAACGTCCATCTTCTTAAGCCAAAAGCATCATGTTTTTCTTTGATACACTTTCTATACTCCATTCCAACATAGAGATGAATCTGAAGTAAGCTTTTACCCAAAAAGTTCGACCTGTTACTCATCAAGTCATCCATATTTCTACAATGCTATGACCTTTTAAAATCATTGTTGTTTAGTGTTATTTCCTTTTTTTTTGTTTTTGCCGGAGGGCAGGAGAGAGGTTCTTAAATCTTTTTAAAAAGTCAAACAAGACATTCATATTGAAAAGAGGAAGATTACGTTTTGACCTAATACAATTTTTAATCTGAATACTTCCAATAAAATCCTTTAATTTGGATTAAGCCTCTAGATATTCCTTATGCTCAAGTTTTTAACTTATTCTTAATCATACTGTTTCTGAATAGAAAGAAGTTAAATTTTGTATTCCCCTTGTCCCCCTCCTTTTGGTAAGTAAATATATGAAGCTTACAAATTGCCTTAATCATCTTTAGGAGTTCTCTGCAGTTTGCACCTAGATGAAATTTTGGAATGGTTTTTATTCTGAAACCATCGTGGGAGCTTCATATTGAGGAGAGAGAGGGTTGGTCCATCATTTTTATTTGGAATACGAGCTTGTCCATCCATTCCTGGTTAATTTACTTCTTCATTCTTTCTGAGCCTCTGGACACTTTTTTCAAGTCTCCATATGGTTCTGATTCCCTGTTCTTGTTCTTTGTTTCTTGTCCTCTCTGATATTGTGATGGCCAGAGTCGACAAGTAATTGTATAAACTAACACAATAGACATGTTTACTTCTTTTTGATTATTTGACGTTTGTTAGTAGTTAAAATAGTAAAATTGGTAAAAGATACAATGTACCAATTTCCAAAAAAAAAAAAAAAAAGGGTAAAAGATAGTTTAGTTTATCCTTCTATATACCTTCTAAAGTAGTTAACTTCACATTGATCTTGAACTCAAGTTCTGCTTACAATTACCTTTTGCTTCAACTCTGTTTGAATAAATCTTGTTTTTGCAGAACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATAT</genome_strand>
        <mrna_strand>TTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E435942" ref_strand="+" ref_description="SGN-E435942 [STM-62-E8]">
      <seq>cggcgacataagcaaaggtgactttgccattttcccttccattatctcattgaatgcgagcaaaattcttctcatcttcactatactgtagaatttagaatgactggagttcataatatttggtttaaacacttagaaagtctcactcttgtagaaaatccagatacaattttgttttctggtggattatttattgaaccattgattccttcttcaattacaaataattttctaaaaatatcatcaattgatgattccagtgagttacattctcccttttctcgtcgtactggaccaattttccggcgagaaaaaaagagtgttcgtgccggttttgggggtaatttcttgtgtttgagtttgtcagttaagaagaatactgaggttgttgggaattccagtgaatgtttgttgagtaatggagatgacagttcagaggtggaagagtctagtgacggcaatggggatgtgagaaagcgaaatattgggttacggggacgtggtgcnatgaacaccagcaaacatttgtgggctggagcagttgctgcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="52748" stop="51597"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52448" g_stop="51897" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="552" r_length="552" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E435942" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E435942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52448" e_stop="51897"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCGACACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATG</genome_strand>
        <mrna_strand>CGGCGACATAAGCAAAGGTGACTTTGCCATTTTCCCTTCCATTATCTCATTGAATGCGAGCAAAATTCTTCTCATCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATAATATTTGGTTTAAACACTTAGAAAGTCTCACTCTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCATTGATTCCTTCTTCAATTACAAATAATTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCTTTTCTCGTCGTACTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTTTTGGGGGTAATTTCTTGTGTTTGAGTTTGTCAGTTAAGAAGAATACTGAGGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGATGACAGTTCAGAGGTGGAAGAGTCTAGTGACGGCAATGGGGATGTGAGAAAGCGAAATATTGGGTTACGGGGACGTGGTGCNATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E313312" ref_strand="+" ref_description="SGN-E313312 [cTOA-13-O5]">
      <seq>acaagcaaagctgactttgacattttcccttccattatcccattgaatgccatcaaaattctcctcagcttcactatactgtagaatttagaatgactggagttcatactatttggtttaaacacttagaaagtctcacacttgtagaaaatccagatacaattttgttttctggtggattatttattgaaccgttgattccttcttcaattacatctagttttctaaaaatatcatcaattgatgattccagtgagttacattctcccatttctcgtcgtagtggaccaattttccggcgagaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="52741" stop="51833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52441" g_stop="52133" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="309" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E313312" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>309</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E313312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52441" e_stop="52133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAA</genome_strand>
        <mrna_strand>ACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E476978" ref_strand="+" ref_description="SGN-E476978 [cSTB-46-H8]">
      <seq>ccaaattgtacagatttagactgaatagactattcaagaatgtgctccgtgatctacagacacctacattgcctgtgattcaagtggcattggcatcatctattggatcttatatggagcaggctagaaaagctcaactgagtattaatcttccaaatgtgacaacagatgatgccaaagggctacctgtacggatggattatgtgcacatcaccacactaacacaagttcatcttggtcagatgctggctgatgccttccttaagactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65116" stop="63664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64816" g_stop="64734" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64733" i_stop="64152" i_length="582">
            <donor d_prob="1.000" d_score="0.94"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64151" g_stop="63964" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="271" r_length="188" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E476978" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E476978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64816" e_stop="64734"/>
          <exon e_start="64151" e_stop="63964"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCTACAGTCACCTACATTGCCTGTCATTCAGGTAAAAAAATATCTTTACTCATTCAAATTATATTACTCTAGTCGGCAAAAATATATTACTGTGTATTAGTTTTTAATATATAATTCTTCATATTAATTATTAATTGTTGAATTGACACGGAAAATCAATGATTTGACTCTTGTACTTCCATATATTACTTTTGTTTTTCCAATTTCCGAATGGAGCTGGTCAGTCTCTATTTATGTACCACATGAAAATTTAAGGTATCGTATAATGGTTGCTCTCTTTCCTTATCAGCAAGTCACATACTCGTGACATTCACTTTTACTTGTCTACTATATTAAAAATAATTTTTTTTTTTATTTGTTCATTTTAGCATATTAAAGGGGGGAAGACATGGTAAAATATGCATTATTCCTTATGAGGTGTATGAAGTCTATTGTGTATAGGTAAAGGTGAAGGAAGGGGGGGGGGGGTAGGTTTTAGGAATTCAAATTCAATTATGTACAACTCTTTTTGATGTCATTATTGGTGTTAGTTAAGACTTAAGAGTGGTCCACACATTTATTGAGGCAAATTTGAATACATATGGCTAATTTTATTTGGTTGGTGTGTGTTTAGGTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGTTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGAGAACTGTTGATGCCAAAGGGCTACCTTTAGGGATGGATTATGTGCACATTACAACACTAGCACAAGTCCAGCTTGGTCAAATGCTGGCTGATACCTTCCTTCAGACTCA</genome_strand>
        <mrna_strand>CCAAATTGTACAGATTTAGACTGAATAGACTATTCAAGAATGTGCTCCGTGATCTACAGACACCTACATTGCCTGTGATTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGCTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGACAACAGATGATGCCAAAGGGCTACCTGTACGGATGGATTATGTGCACATCACCACACTAACACAAGTTCATCTTGGTCAGATGCTGGCTGATGCCTTCCTTAAGACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705263" ref_strand="+" ref_description="SGN-E705263 [FA26CE05]">
      <seq>cacagttttgcctcaatttcaagaaaacaatgatttcctttctttggttaatacttctaacacacatcaggtgggtaaatacagcagatctagcagatgtttcaacttcaaaggtcctaaacatattcatattagccggacaaagcaacatgtccggccgaggtggtgtcattaaccatggccaaaatggcctggctaatgagacatgggatggtgtgattccaccagaatgtcaatccaactcaaacatcctcagactcaatgcaggacttacatgggttgaagctcaggaaccacttcaccaagacatagatttgggtaaagtttgtggagttgggccaggtatgtcatttgccaattcagttctgaagagagatccaagtattggagtgatcggtttggtgccttgtgctattggaggaacaaatataagcgaatgggctcgtggcagtgttctgtataatcatatgataaggagaacagaagctgctttgcaaggaggtggaaaacttcaagctttgttgtggtaccaaggtgagagtgatacagagactcttgaagatgccaaattgtacagatttagactgaagagattattcaagaatgtgctccgtgatctacagtcacctacattgcctgtcattcaagtggcattggcatcatctattggatcttatatggagcaggttagaaaagctcaactgagtattaatcttccaaatgtgagaactgttgatgccaaagggctacctttagggatggattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65680" stop="63731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65380" g_stop="64734" g_length="647"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64733" i_stop="64152" i_length="582">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64151" g_stop="64031" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="768" r_length="121" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E705263" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>768</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65380" e_stop="64734"/>
          <exon e_start="64151" e_stop="64031"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAGTTTTGCCTCAATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCTACAGTCACCTACATTGCCTGTCATTCAGGTAAAAAAATATCTTTACTCATTCAAATTATATTACTCTAGTCGGCAAAAATATATTACTGTGTATTAGTTTTTAATATATAATTCTTCATATTAATTATTAATTGTTGAATTGACACGGAAAATCAATGATTTGACTCTTGTACTTCCATATATTACTTTTGTTTTTCCAATTTCCGAATGGAGCTGGTCAGTCTCTATTTATGTACCACATGAAAATTTAAGGTATCGTATAATGGTTGCTCTCTTTCCTTATCAGCAAGTCACATACTCGTGACATTCACTTTTACTTGTCTACTATATTAAAAATAATTTTTTTTTTTATTTGTTCATTTTAGCATATTAAAGGGGGGAAGACATGGTAAAATATGCATTATTCCTTATGAGGTGTATGAAGTCTATTGTGTATAGGTAAAGGTGAAGGAAGGGGGGGGGGGGTAGGTTTTAGGAATTCAAATTCAATTATGTACAACTCTTTTTGATGTCATTATTGGTGTTAGTTAAGACTTAAGAGTGGTCCACACATTTATTGAGGCAAATTTGAATACATATGGCTAATTTTATTTGGTTGGTGTGTGTTTAGGTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGTTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGAGAACTGTTGATGCCAAAGGGCTACCTTTAGGGATGGATTATG</genome_strand>
        <mrna_strand>CACAGTTTTGCCTCAATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCTACAGTCACCTACATTGCCTGTCATTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGTTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGAGAACTGTTGATGCCAAAGGGCTACCTTTAGGGATGGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551393" ref_strand="+" ref_description="SGN-E551393 [TUS-11-E15]">
      <seq>cctttctttggttaatacttctaacacacatcaggtgggtaaatacagcagatctagcagatgtttcaacttcaaaggtcctaaacatattcatattagccggacaaagcaacatttccggccgaggtggtgtcattaaccatggccaaaatggcctggctaatgagacatgggatggtgtgattccaccagaatgtcaatccaactcaaacatcctcagactcaatgcaggacttacatgggttgaagctcaggaaccacttcaccaagacatagatttgggtaaagtttgtggagttgggccaggtatgtcatttgccaattcagttctgaagagagatccaagtattggagtgattggtttggtgccttgtgctattggaggaacaaatataagcgaatgggctcgtggcagtgttctgtataatcatatgataaggagaacagaagctgctttgcaaggaggtggaaaacttcaagctttgttgtggtaccaaggtgagagtgatacagagactcttgaagatgccaaattgtacagatttagactgaagagattattcaagaatgtgctccgtgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65644" stop="64462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65344" g_stop="64762" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E551393" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551393" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65344" e_stop="64762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCT</genome_strand>
        <mrna_strand>CCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATTTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATTGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688227" ref_strand="+" ref_description="SGN-E688227 [t3_tus_11_e15]">
      <seq>cctttctttggttaatacttctaacacacatcaggtgggtaaatacagcagatctagcagatgtttcaacttcaaaggtcctaaacatattcatattagccggacaaagcaacatttccggccgaggtggtgtcattaaccatggccaaaatggcctggctaatgagacatgggatggtgtgattccaccagaatgtcaatccaactcaaacatcctcagactcaatgcaggacttacatgggttgaagctcaggaaccacttcaccaagacatagatttgggtaaagtttgtggagttgggccaggtatgtcatttgccaattcagttctgaagagagatccaagtattggagtgattggtttggtgccttgtgctattggaggaacaaatataagcgaatgggctcgtggcagtgttctgtataatcatatgataaggagaacagaagctgctttgcaaggaggtggaaaacttcaagctttgttgtggtaccaaggtgagagtgatacagagactcttgaagatgccaaattgtacagatttagactgaagagattattcaagaatgtgctccgtgatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65644" stop="64462"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65344" g_stop="64762" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="583" r_length="583" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E688227" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65344" e_stop="64762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCT</genome_strand>
        <mrna_strand>CCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATTTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATTGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550593" ref_strand="+" ref_description="SGN-E550593 [TUS-11-E16]">
      <seq>atttcaagaaaacaatgatttcctttctttggttaatacttctaacacacatcaggtgggtaaatacagcagatctagcagatgtttcaacttcaaaggtcctaaacatattcatattagccggacaaagcaacatttccggccgaggtggtgtcattaaccatggccaaaatggcctggctaatgagacatgggatggtgtgattccaccagaatgtcaatccaactcaaacatcctcagactcaatgcaggacttacatgggttgaagctcaggaaccacttcaccaagacatagatttgggtaaagtttgtggagttgggccaggtatgtcatttgccaattcagttctgaagagagatccaagtattggagtgattggtttggtgccttgtgctattggaggaacaaatataagcgaatgggctcgtggcagtgttctgtataatcatatgataaggagaacagaagctgctttgcaaggaggtggaaaacttcaagctttgttgtggtaccaaggtgagagtgatacagagactcttgaagatgccaaattgtacagatttagactgaagagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65665" stop="64485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65365" g_stop="64785" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E550593" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65365" e_stop="64785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTA</genome_strand>
        <mrna_strand>ATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATTTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATTGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688228" ref_strand="+" ref_description="SGN-E688228 [t3_tus_11_e16]">
      <seq>atttcaagaaaacaatgatttcctttctttggttaatacttctaacacacatcaggtgggtaaatacagcagatctagcagatgtttcaacttcaaaggtcctaaacatattcatattagccggacaaagcaacatttccggccgaggtggtgtcattaaccatggccaaaatggcctggctaatgagacatgggatggtgtgattccaccagaatgtcaatccaactcaaacatcctcagactcaatgcaggacttacatgggttgaagctcaggaaccacttcaccaagacatagatttgggtaaagtttgtggagttgggccaggtatgtcatttgccaattcagttctgaagagagatccaagtattggagtgattggtttggtgccttgtgctattggaggaacaaatataagcgaatgggctcgtggcagtgttctgtataatcatatgataaggagaacagaagctgctttgcaaggaggtggaaaacttcaagctttgttgtggtaccaaggtgagagtgatacagagactcttgaagatgccaaattgtacagatttagactgaagagatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65665" stop="64485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65365" g_stop="64785" g_length="581"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="581" r_length="581" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E688228" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65365" e_stop="64785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTA</genome_strand>
        <mrna_strand>ATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATTTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATTGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E272348" ref_strand="+" ref_description="SGN-E272348 [cLEM-19-A19]">
      <seq>tttcaagaaaacaatgatttcctttctttggttaatacttctaacacacatcaggtgggtaaatacagcagatctagcagatgtttcaacttcaaaggtcctaaacatattcatattagccggacaaagcaacatttccggccgaggtggtgtcattaaccatggccaaaatggcctggctaatgagacatgggatggtgtgattccaccagaatgtcaatccaactcaaacatcctcagactcaatgcaggacttacatgggttgaagctcaggaaccacttcaccaagacatagatttgggtaaagtttgtggagttgggccaggtatgtcatttgccaattcagttctgaagagagatccaagtattggagtgattggtttggtgccttgtgctattggaggaacaaatataagcgaatgggctcgtggcagtgttctgtataatcatatgataaggagaacagaagctgctttgcaaggaggtggaaaacttcaagctttgttgtggtaccaaggtgagagtgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="65664" stop="64534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65364" g_stop="64834" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E272348" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272348" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65364" e_stop="64834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATAC</genome_strand>
        <mrna_strand>TTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATTTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATTGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E217520" ref_strand="+" ref_description="SGN-E217520 [cLEL-21-J24](-)">
      <seq>caatcagtagcaagatagcatctcactgatcaagtaaactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaataatggcaaagtaaaaccctttgtcagcttttgagtttttgaagtgtgttcgatgtgtgttagttctttgaactgggtaaacagtcttgtttgtgtttcagtagtcaaatgacgagcagatatgttctatgaaaggaatcctgttctctttccattctatttatgttttaagcatgcttgttaagggtaaaacgagtaagtctaaaaaacccaccaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="68826" stop="67903"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68526" g_stop="68193" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="362"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E217520" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68526" e_stop="68193"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATATTTTAAGCATGCTCGTTACGGGT-AAATGAGTAAGTC</genome_strand>
        <mrna_strand>CAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAAACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCGATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTTGTTTGTGTTTCAGTAGTCAAATGACGAGCAGATATGTTCTATGAAAGGAATCCTGTTCTCTTTCCA-TTCTATTTATGTTTTAAGCATGCTTGTTAAGGGTAAAACGAGTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288984" ref_strand="+" ref_description="SGN-E288984 [cLES-17-H5]">
      <seq>ttgtgttttcaataatggcaaagtaaaaccctttgtcagcttttgagtttttgaagtgtgttcaatgtgtgttagttctttgaactgggtaaacagtctcgttggtgtttcagtagtcaaattacaagcagatattttctatgaaaggaatcctgttctctttgcatttatatttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="68706" stop="67929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68406" g_stop="68222" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E288984" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>185</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68406" e_stop="68222"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATATTTTAAG</genome_strand>
        <mrna_strand>TTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558897" ref_strand="+" ref_description="SGN-E558897 [18309]">
      <seq>ggatccccggcgctgcaggccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgcttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctctgggtccatgggagactattggatcgcttggagttcgaaatttcatgctgttcaagaagtcatcacagggtgagaacacagttgatgatgggaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtcgcaagatagcatctcactgatcaagtacactcggtgtcttttgaaatctttcttcgatgcgtctgtcgcatattgtgtgttcatgcgaccaaataaacgagtgcagtatttgtgttttcaataatggcaaagtaaaacctttgtcagctgttgagtttttgagtgtgttcaatgtgtgttatttctttgaactgggtaaagagtcttgttggtgtttcagtagtcaaatgacaagcaaacattttctatgaaaggaatcatgttctctttccaaaaaaaaaaaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69959" stop="47813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69659" g_stop="69517" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="161" r_length="142" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68226" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="608" r_length="447" r_score="0.894"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E558897" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69659" e_stop="69517"/>
          <exon e_start="68676" e_stop="68226"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTC-G-GTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATATTT</genome_strand>
        <mrna_strand>CCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCG-CTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGAAATTTCATGCTGTTCAAGAAGTCATCACAGGGTGAGAACACAGTTGATGATGGGAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTCGCAAGATAGCATCTCACTGATCAAGTACACTCGGTGTCTTTTGAAATCTTTCTTCGATGCGTCTGTCGCATATTGTGTGTT--CATGCGA--CCAAATAAACGAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAA-CCTTTGTCAGCTGTTGAGTTTTTG-AGTGTGTTCAATGTGTGTTATTTCTTTGAACTGGGTAAAGAGTCTTGTTGGTGTTTCAGTAGTCAAATGACAAGCAAACATTTTCTATGAAAGGAATCATGTTCTCTTTCCAAAAAAAAAAAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353198" ref_strand="+" ref_description="SGN-E353198 [cTOS-14-M14]">
      <seq>attttggtgtttgttggggtcaaactgttgagagctgaggttatatggggaaccccctcttgaccctctggtctgcctatgcacttgccttctcagaccctgctttgtgggattatgctgtgtttgattgatgtaccgttggtgctcactctaaattagtagatgaactgcttgttgtcccgtgttatagaggctcttgttttttgtcccaatggagtattttacttgtgcttatgttcacattgcagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaataatggcaaagtaaaaccctttgtcagcttttgagtttttgaagtgtgttcgatgtgtgttagttctttgaactgggtaaacagtctttgttgtgtttcagtagtcaaatgacgagcagatatgttctatgaaaggaatcctgntctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69226" stop="67946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68926" g_stop="68246" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E353198" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68926" e_stop="68246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTG--T--TTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCT</genome_strand>
        <mrna_strand>ATTTTGGTGTTTGTT-G-G----GGTCAAACTGTTGAGAGCTGAGGTTATATGGGGAACCCCCTCTTGACCCTCTGGTCTGCCTATGCACTTGCCTTCTCAGACCCTGCTTTGTGGGATTATGCTGTGTTTGATTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCGATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTTTGTTGTGTTTCAGTAGTCAAATGACGAGCAGATATGTTCTATGAAAGGAATCCTGNTCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415935" ref_strand="-" ref_description="SGN-E415935 [STM-22-O17]">
      <seq>tttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgtcttcctgttcttggttctgacttcagtagctttgtgctttattgccccagtgctggcactgaagctctgggtccatgggagactattggatcgcttggagttcgaaatttcatgctgttcaagaagtcatcacagggtgagaacacagttgatgatgggaagcagtcaccaatccgaaagggagctggaagctggaagacatggtttaacaagtcaatcagtcgcaagatcgcatctcactgatcaagtacactcggtcttttgaaaattttcttcaatgcggtctgtcgcatattgtgtgttacatgcgaccaaataaacgagtgcagtatttgtgttttcaataatggcaaaactaaaacctttgtcagctgttgagtttttgagtgtgtgttcaatgtgtgttagttctttgaattgggtaaacgtcttgttggtgtttcagtaacattttctatgaaaggaatcataattctttcaaaaaaaaaaaaaattaagttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69998" stop="67941"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69698" g_stop="69517" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68292" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="565" r_length="383" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="598" polyA_stop="612"/>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E415935" ref_strand="-">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415935" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="69698" e_stop="69517"/>
          <exon e_start="68676" e_stop="68292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGC-GTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGA-AGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTA</genome_strand>
        <mrna_strand>TTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGTCTTCCTGTTCTTGGTTCTGACTTCAGTAGCTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGAAATTTCATGCTGTTCAAGAAGTCATCACAGGGTGAGAACACAGTTGATGATGGGAAGCAGTCACCAATCCGAAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTCGCAAGATCGCATCTCACTGATCAAGTACACTCGGTCTTTTGAAAATTTTCTTCAATGCGGTCTGTCGCATATTGTGTGTT-ACATGCGA--CCAAATAAACGAGTGCAGTATTTGTGTTTTCAATAATGGCAAAACTAAAACCTTTGTCAGCTGTTGAGTTTTTGAGTGTGTGTTCAATGTGTGTTAGTTCTTTGAATTGGGTAAAC-GTCTTGTTGGTGTTTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704635" ref_strand="+" ref_description="SGN-E704635 [FA24DD02]">
      <seq>gtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgcgtctgtcgcaattcgtgtgttcacatgcgacccctaataaacaagtgcagtatttgtgtttttcataatggcaaagtaaaaccccttgtcagcttttgagtttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70383" stop="68054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70083" g_stop="69517" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68354" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="890" r_length="323" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E704635" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>890</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70083" e_stop="69517"/>
          <exon e_start="68676" e_stop="68354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTG</genome_strand>
        <mrna_strand>GTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTTCATAATGGCAAAGTAAAACCCCTTGTCAGCTTTTGAGTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E746643" ref_strand="+" ref_description="SGN-E746643 [GI|47104107]">
      <seq>gaaaacaaaaaccctaaccctaattctatataaaccactattattcttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaatttcattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70462" stop="47815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70162" g_stop="69517" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68382" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="941" r_length="295" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E746643" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>941</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E746643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70162" e_stop="69517"/>
          <exon e_start="68676" e_stop="68382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTA</genome_strand>
        <mrna_strand>GAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTTCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E350629" ref_strand="+" ref_description="SGN-E350629 [cTOS-5-P2]">
      <seq>gttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69952" stop="68092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69652" g_stop="69517" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68387" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="426" r_length="290" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E350629" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350629" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69652" e_stop="69517"/>
          <exon e_start="68676" e_stop="68387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCA</genome_strand>
        <mrna_strand>GTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353173" ref_strand="+" ref_description="SGN-E353173 [cTOS-14-A16]">
      <seq>gttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69952" stop="68092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69652" g_stop="69517" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68387" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="426" r_length="290" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E353173" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69652" e_stop="69517"/>
          <exon e_start="68676" e_stop="68387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCA</genome_strand>
        <mrna_strand>GTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355118" ref_strand="+" ref_description="SGN-E355118 [cTOS-18-F12]">
      <seq>gttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69952" stop="68092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69652" g_stop="69517" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68387" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="426" r_length="290" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E355118" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69652" e_stop="69517"/>
          <exon e_start="68676" e_stop="68387"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCA</genome_strand>
        <mrna_strand>GTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E705653" ref_strand="+" ref_description="SGN-E705653 [FA27DA10]">
      <seq>gttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgcgtctgtcgcaattcgtgtgttcacatgcgacccctaataaacaagtgcagtatttgtgtttttcataatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70386" stop="68088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70086" g_stop="69517" g_length="570"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="570" r_length="570" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68388" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="571" r_stop="859" r_length="289" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E705653" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70086" e_stop="69517"/>
          <exon e_start="68676" e_stop="68388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGC</genome_strand>
        <mrna_strand>GTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTTCATAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370668" ref_strand="+" ref_description="SGN-E370668 [TUS-27-O4](-)">
      <seq>caaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgtgtctgtcgcaattcgtgtgtttacatgcgacccctaataaacgagtgcagtatttgtgttttcaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70259" stop="68092"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69959" g_stop="69517" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68388" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="732" r_length="289" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E370668" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69959" e_stop="69517"/>
          <exon e_start="68676" e_stop="68388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGC</genome_strand>
        <mrna_strand>CAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGTGTCTGTCGCAATTCGTGTGTTTACATGCGACCCCTAATAAACGAGTGCAGTATTTGTGTTTTCAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E722729" ref_strand="+" ref_description="SGN-E722729 [FC18AE09]">
      <seq>gcaaaactcatcatccatcgtttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgcgtctgtcgcaattcgtgtgttcacatgcgacccctaataaacaagtgcagtatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70404" stop="68104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70105" g_stop="69517" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68404" g_length="273"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="863" r_length="273" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E722729" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>862</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70105" e_stop="69517"/>
          <exon e_start="68676" e_stop="68404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAAACTCATCATCCATCG-TTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTG</genome_strand>
        <mrna_strand>GCAAAACTCATCATCCATCGTTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E704605" ref_strand="+" ref_description="SGN-E704605 [FA24DA05]">
      <seq>ctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgcgtctgtcgcaattcgtgtgttcacatgcgacccctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70375" stop="68123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70075" g_stop="69517" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68423" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="813" r_length="254" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E704605" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>813</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70075" e_stop="69517"/>
          <exon e_start="68676" e_stop="68423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAA</genome_strand>
        <mrna_strand>CTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727773" ref_strand="+" ref_description="SGN-E727773 [LA15CG10]">
      <seq>cgatgaaaacaaaaaccctaaccctaattctatataaaccactattattcttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggtcttttgaaatctttcttctatgcgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70464" stop="68155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70166" g_stop="69517" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="650" r_length="650" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68455" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="872" r_length="222" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E727773" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>872</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70166" e_stop="69517"/>
          <exon e_start="68676" e_stop="68455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTG</genome_strand>
        <mrna_strand>CGATGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E415934" ref_strand="+" ref_description="SGN-E415934 [STM-22-O17]">
      <seq>ctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttattccacaatttctcgaaatctctaatcgtgattttttcttctttttaccctgatttgtttgattgaaaataaattttggaaaataccagaaaaaaaaaaattgaaattgaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggcaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgtcttcctgttcttggttctgacttcagtagctttgtgctttattgccccagtgctggcactgaagctctgggtccatgggagactattggatcgcttggagttcgaaatttcatgctgttcaagaagtcatcacagggtgagaacacagttgatgatgggaagcagtcaccaatccgaaagggagctggaagctggaagacatggnttaacangtcaatcagtcgcaagatcgcatctcactgatcaagtacactcggtcttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70246" stop="68177"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69946" g_stop="69517" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="439" r_length="439" r_score="0.926"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68477" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="639" r_length="200" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E415934" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E415934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69946" e_stop="69517"/>
          <exon e_start="68676" e_stop="68477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCG--A-----AATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAAT--TATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTG</genome_strand>
        <mrna_strand>CTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTATTCCACAATTTCTCGAAATCTCTAATCGTGATTTTTTCTTCTTTTTACCCTGATTTGTTTGATTGAAAATAAATTTTGGAAAATACCAGAAAAAAAAAAATTGAAATTGAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGCAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGTCTTCCTGTTCTTGGTTCTGACTTCAGTAGCTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGAAATTTCATGCTGTTCAAGAAGTCATCACAGGGTGAGAACACAGTTGATGATGGGAAGCAGTCACCAATCCGAAAGGGAGCTGGAAGCTGGAAGACATGGNTTAACANGTCAATCAGTCGCAAGATCGCATCTCACTGATCAAGTACACTCGGTCTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728113" ref_strand="+" ref_description="SGN-E728113 [LA16DA03]">
      <seq>aggatcgccatcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacatggtttaacaagtcaatcagtagcaagatagcatctcactgatcaagtagactcggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70413" stop="68183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70116" g_stop="69517" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68483" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="794" r_length="194" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E728113" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70116" e_stop="69517"/>
          <exon e_start="68676" e_stop="68483"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGT</genome_strand>
        <mrna_strand>AGGATCGCCATCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357067" ref_strand="+" ref_description="SGN-E357067 [cTOS-22-O24]">
      <seq>ttggggtcaaactgttgagagctgaggttatatggggaactccntccttgaccctctggtctgcctatgcacttgccttctcagaccctgctttgtgggattatgctgtgtttgattgatgtaccgttggtgctcactctaaattagtagatgaactgcttgttgtcccgtgttatagaggctcttgttttttgtcccaatggagtattttacttgtgcttatgttcacattgcagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaaccaatcaccaatccggaagggaactggaaactggaagacatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69203" stop="68237"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68902" g_stop="68537" g_length="366"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="376" r_length="371" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E357067" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>366</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68902" e_stop="68537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTT-CTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTG--T--TTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGG</genome_strand>
        <mrna_strand>GTCAAACTGTTGAGAGCTGAGGTTATATGGGGAACTCCNTCCTTGACCCTCTGGTCTGCCTATGCACTTGCCTTCTCAGACCCTGCTTTGTGGGATTATGCTGTGTTTGATTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAACCAATCACCAATCCGGAAGGGAACTGGAAACTGGAAGACATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E727822" ref_strand="+" ref_description="SGN-E727822 [LA15DD06]">
      <seq>ttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccggaagggagctggaagctggaagacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70385" stop="68239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70085" g_stop="69517" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="569" r_length="569" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68539" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="570" r_stop="707" r_length="138" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E727822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70085" e_stop="69517"/>
          <exon e_start="68676" e_stop="68539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACAT</genome_strand>
        <mrna_strand>TTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E724470" ref_strand="+" ref_description="SGN-E724470 [FC24AH01]">
      <seq>gaaacatctatatatacaggaaaacaaaacccctaaacctaattctatataaaccactattattcttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaaaacagccgatggtggtaagcagtcaccaatccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70481" stop="68265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70181" g_stop="69517" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="665" r_length="665" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68565" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="777" r_length="112" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E724470" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E724470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70181" e_stop="69517"/>
          <exon e_start="68676" e_stop="68565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAACATCTATATATACAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCG</genome_strand>
        <mrna_strand>GAAACATCTATATATACAGGAAAACAAAACCCCTAAACCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E482096" ref_strand="+" ref_description="SGN-E482096 [cSTD-20-J20]">
      <seq>gaggaaaacaaaaaccctaaccctaattctatataaaccactattattcttccacgccagccaaaactcatcatccatcgctgtttctctcgaaaaaacttgttttccttcatctaaagattcatttcttcttttttttttcttgcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaactccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttattccacaatttctcgaaatctctaatcgtgattttttcttctttttaccctgatttgtttgattgaaaataaattttggaaaataccagaaaaaaaaaattgaaattgaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggcaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgtcttcctgttcttggttctgacttcagtagctttgtgctttattgccccagtgctggcactgaagctctgggtccatgggagactattggatcgcttggagttcgaaatttcatgctgttcaagaagtcatcacagggtgagaacacagttgatgatgggaagcagtcaccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70464" stop="68267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70165" g_stop="69517" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68567" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="767" r_length="110" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E482096" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482096" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70165" e_stop="69517"/>
          <exon e_start="68676" e_stop="68567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAAT--TGTTTTC-TTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCG--A-----AATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAA--TTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATC</genome_strand>
        <mrna_strand>GAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCCACGCCAGCCAAAACTCATCATCCATCGCTGT-TT-CTCTCG-AAAAAACTTGTTTTCCTTCATCTAAAGATTCATTTCTTCTTTTTTTTTTCTTGCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACTCCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTATTCCACAATTTCTCGAAATCTCTAATCGTGATTTTTTCTTCTTTTTACCCTGATTTGTTTGATTGAAAATAAATTTTGGAAAA-TACCAGAAAAAAAAAATTGAAATTGAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGCAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGTCTTCCTGTTCTTGGTTCTGACTTCAGTAGCTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGAAATTTCATGCTGTTCAAGAAGTCATCACAGGGTGAGAACACAGTTGATGATGGGAAGCAGTCACCAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247397" ref_strand="+" ref_description="SGN-E247397 [cLEF-46-H19]">
      <seq>gaaggctggtacttccgctgcctcggtgttgagccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgagaacacagccgatggtggtaagcagtcaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70209" stop="68269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69909" g_stop="69517" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68569" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="500" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E247397" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69909" e_stop="69517"/>
          <exon e_start="68676" e_stop="68569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAA</genome_strand>
        <mrna_strand>GAAGGCTGGTACTTCCGCTGCCTCGGTGTTGAGCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGG-AAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAACACAGCCGATGGTGGTAAGCAGTCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E605574" ref_strand="+" ref_description="SGN-E605574 [21497]">
      <seq>gaggaaaacaaaaacctaaacctaattctatataaaccactattattcttcattgccagccaaaactcatcatccatcgctgtttctctcgaaaaaacttgttttccttcatctaaagattcatttttttttcttgcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaactccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgctttttctacaatttctcgaaatctcatatcgtgattttttcttctttttgccctgatttgtttgattgaaaataaattttggaaaatcccagaaaaaaaattgaaattgaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggaaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgncttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctctgggtccatgggagactattggatcgcttggagttcgaaatttcatgctgttcaagaagtcatcacagggtggagaacaccagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70464" stop="68293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70165" g_stop="69517" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68587" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="735" r_length="89" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E605574" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E605574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70165" e_stop="69517"/>
          <exon e_start="68676" e_stop="68587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCG--A----A-ATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATG</genome_strand>
        <mrna_strand>GAGGAAAACAAAAA-CCTAAACCTAATTCTATATAAACCACTATTATTCTTCATTGCCAGCCAAAACTCATCATCCATCGCTGTTT--CTCTCG-AAAAAACTTGTTTTCCTTCATCTAAAG-A-T-TCAT-TTT-TTTTTCTTGCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACTCCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTTCTACAATTTCTCGAAATCTCATATCGTGATTTTTTCTTCTTTTTGCCCTGATTTGTTTGATTGAAAATAAATTTTGGAAAA-TCCCAGAAAAAAAATTGAAATTGAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGAAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGNCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGAAATTTCATGCTGTTCAAGAAGTCATCACAGGGTG-GAGAACACCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305697" ref_strand="+" ref_description="SGN-E305697 [cLEX-14-P24]">
      <seq>tggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70144" stop="68300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69844" g_stop="69517" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68600" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="405" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E305697" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E305697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69844" e_stop="69517"/>
          <exon e_start="68676" e_stop="68600"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAG</genome_strand>
        <mrna_strand>TGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347810" ref_strand="+" ref_description="SGN-E347810 [cTOF-26-B24]">
      <seq>ttcttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgcttggagttcggaacttcatgctgttcaagaagtcatcacagggcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70419" stop="68301"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70119" g_stop="69517" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="603" r_length="603" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68601" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="679" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E347810" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70119" e_stop="69517"/>
          <exon e_start="68676" e_stop="68601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGA</genome_strand>
        <mrna_strand>TTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E486069" ref_strand="+" ref_description="SGN-E486069 [cSTE-20-J20]">
      <seq>gaggaaaacaaaaaccctaaccctaattctatataaaccactattattcttccacgccagccaaaactcatcatccatcgctgtttctctcgaaaaaacttgttttccttcatctaaagattcatttcttcttttttttttcttgcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaactccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttattccacaatttctcgaaatctctaatcgtgattttttcttctttttaccctgatttgtttgattgaaaataaattttggaaaataccagaaaaaaaaaattgaaattgaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggcaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgtcttcctgttcttggttctgacttcagtagctttgtgctttattgccccagtgctggcactgaagctctgggtccatgggagactattggatcgcttggagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70464" stop="68339"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70165" g_stop="69517" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="657" r_length="657" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68639" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="695" r_length="38" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E486069" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>687</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E486069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70165" e_stop="69517"/>
          <exon e_start="68676" e_stop="68639"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAAT--TGTTTTC-TTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCG--A-----AATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAA--TTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTT</genome_strand>
        <mrna_strand>GAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCCACGCCAGCCAAAACTCATCATCCATCGCTGT-TT-CTCTCG-AAAAAACTTGTTTTCCTTCATCTAAAGATTCATTTCTTCTTTTTTTTTTCTTGCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACTCCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTATTCCACAATTTCTCGAAATCTCTAATCGTGATTTTTTCTTCTTTTTACCCTGATTTGTTTGATTGAAAATAAATTTTGGAAAA-TACCAGAAAAAAAAAATTGAAATTGAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGCAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGTCTTCCTGTTCTTGGTTCTGACTTCAGTAGCTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGTCCATGGGAGACTATTGGATCGCTTGGAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E370669" ref_strand="+" ref_description="SGN-E370669 [TUS-27-O4]">
      <seq>gaaaacaaaaaccctaaccctaattctatataaaccactattattcttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaatttcattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70462" stop="68347"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70162" g_stop="69517" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68647" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="676" r_length="30" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E370669" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70162" e_stop="69517"/>
          <exon e_start="68676" e_stop="68647"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGC</genome_strand>
        <mrna_strand>GAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTTCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E344127" ref_strand="+" ref_description="SGN-E344127 [cTOF-16-A6]">
      <seq>ttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctanggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctcttggtccatgggagactattggatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70416" stop="68349"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70116" g_stop="69517" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68649" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="601" r_stop="628" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E344127" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E344127" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70116" e_stop="69517"/>
          <exon e_start="68676" e_stop="68649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATC</genome_strand>
        <mrna_strand>TTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTANGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTTGGTCCATGGGAGACTATTGGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E558786" ref_strand="+" ref_description="SGN-E558786 [18181]">
      <seq>ttctctcgaaaaaatttgttttccttcatctaagattcatttcttttttttcttgcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaactccaaaaaggggggtctctgtttcatctgctttctcttttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttgaacgctgttcgcttttcccacaatttctcgaaatcccaaatcgtgattttttcttctttttgccctgatttgtttgattaaaaataaattttggaaaatacccagaaaaaaaattgaaatttaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggaaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgctttattgccccagtgctggcactgaagctctgggtccatgggagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70379" stop="68356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70079" g_stop="69517" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68676" g_stop="68656" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="587" r_length="21" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E558786" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E558786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70079" e_stop="69517"/>
          <exon e_start="68676" e_stop="68656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCG-------AAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAGGTAATTCTCACTATATCATCATGTATAGAAATATAATAGATGTTGTGCTTTTACCCTTTTTTTATAAATTATATATATGGGTGATTTGTTTGTGTTGTATCTAGCTTCGTTTGTGTTTTGTTGGTGAGAATTTTTGGTCCGCTCTTTGTTTTTTGCATCAGAAAATTTTAAACTCGTGCTGATTATCTAGTTGATGTATTCTGAATTGTGTTGTATTGAGATTTCTGCTTGTTAGGAAGTAGTTTGTTTTTTCTGTAGCTTTGCTTGCTTTTATAAATTAGCTGGCTTTTGTATAATTTTGCTGATTTGACGATGCTGATTTATTTGTGCAAACTTGATTTGTTAGATCATTAAGTTTGCTCTTTGTTCCTTGCATTTGGTTGCTTTTGTGATTATGTTTAATAACTTGTTCCTGTTATTAGTTTGATTATCAAGTTGCATATGCTCGAGTTTGTTGTTGATATGCTATAGCTGCTTGCTTCAACTTTATGATTAGTTTGTTTAAATCATATGAACAATTTGCATCTGGTACGATTGTACGTGTGTTCGTTTTGTGCTCTAAAATGCTTTTAATGTTCCAACATTGTAAAATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTA</genome_strand>
        <mrna_strand>TTCTCTCG-AAAAAATTTGTTTTCCTTCATC-TAAG-ATTCATTTCTTT-TTTTTCTTGCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACTCCAAAAAGGGGGGTCTCTGTTTCATCTGCTTTCTCTTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTGAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCCCAAATCGTGATTTTTTCTTCTTTTTGCCCTGATTTGTTTGATTAAAAATAAATTTTGGAAAATACCCAGAAAAAAAATTGAAATTTAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGAAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGGTCCATGGGAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E307202" ref_strand="+" ref_description="SGN-E307202 [cLEY-15-L3]">
      <seq>tcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgacttcagtaactttgtgcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70395" stop="69240"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70095" g_stop="69540" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E307202" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70095" e_stop="69540"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTA</genome_strand>
        <mrna_strand>TCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAG-AAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E437974" ref_strand="+" ref_description="SGN-E437974 [cSTA-5-P21]">
      <seq>ctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttattccacaatttctcgaaatctctaatcgtgattttttcttctttttaccctgatttgtttgattgaaaataaattttggaaaataccagaaaaaaaaaaattgaaattgaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggcaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgctagggaaggccgccttcctgttcttggttctgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70246" stop="69260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69946" g_stop="69560" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E437974" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>387</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E437974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69946" e_stop="69560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCG--A-----AATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAAT--TATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGAC</genome_strand>
        <mrna_strand>CTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTATTCCACAATTTCTCGAAATCTCTAATCGTGATTTTTTCTTCTTTTTACCCTGATTTGTTTGATTGAAAATAAATTTTGGAAAATACCAGAAAAAAAAAAATTGAAATTGAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGCAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E588854" ref_strand="+" ref_description="SGN-E588854 [42416]">
      <seq>agaaagaggaaaacaaaaaccctaaccctaattctatataaaccactattattcttcatcgacagccaaaactcatcatccatcgctgtttctctcgaaaaaacttgttttccttcatctaaagatacatttctttttttttcttgcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaactccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttattccacaatttctcgaaatctctaatcgtgattttttcttctttttgccctgatttgtttgattgaaaataaattttggaaaataccagaaaaaaaaatttttgaaattgaaaacaagatgctgctttacaagccaaagaagaatcaaaccggaaaaggaaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgtcattgatactgcaatgaacgcttatgctagggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70470" stop="69287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70170" g_stop="69587" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E588854" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>584</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E588854" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70170" e_stop="69587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCG--A-----AATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAG--AAAAAAA--TTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAA</genome_strand>
        <mrna_strand>AGAAAGAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGACAGCCAAAACTCATCATCCATCGCTG--TTTCTCTCG-AAAAAACTTGTTTTCCTTCATCTAAAG-ATACATTTCTTTTTTTTTCTTGCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACTCCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTATTCCACAATTTCTCGAAATCTCTAATCGTGATTTTTTCTTCTTTTTGCCCTGATTTGTTTGATTGAAAATAAATTTTGGAAAA-TACCAGAAAAAAAAATTTTTGAAATTGAAAACAAGATGCTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGAAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTCATTGATACTGCAATGAACGCTTATGCTAGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E726049" ref_strand="+" ref_description="SGN-E726049 [LA10AF02]">
      <seq>ttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggcgttgacccttaaacgctgttcgcttttcccacaatttctcgaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatngtattgatactgcaatgaaagcttatgctaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70385" stop="69289"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70085" g_stop="69589" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E726049" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70085" e_stop="69589"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGG</genome_strand>
        <mrna_strand>TTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATNGTATTGATACTGCAATGAAAGCTTATGCTAGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E253397" ref_strand="+" ref_description="SGN-E253397 [cLEG-24-C18]">
      <seq>tcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtgccggtccgatccggtttgttgttaatgaagaggagcttgtggctgatgttattgatactgcaatgaaagcttatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70412" stop="69294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70112" g_stop="69594" g_length="519"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="519" r_length="519" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E253397" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253397" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70112" e_stop="69594"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGC</genome_strand>
        <mrna_strand>TCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E271414" ref_strand="+" ref_description="SGN-E271414 [cLEM-5-M16]">
      <seq>gaaaacaaaaaccctaaccctaattctatataaaccactattattcttcatcgccagcccaaactcatcatccatcgttgtttttctctcgaaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaatttcattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70462" stop="69370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70162" g_stop="69670" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E271414" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E271414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70162" e_stop="69670"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTG</genome_strand>
        <mrna_strand>GAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTTCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E279590" ref_strand="+" ref_description="SGN-E279590 [cLER-5-L4]">
      <seq>aaaaaaactttgtttctttcatcttaagaattgttttctttctttttctttcgaattccattgtgaatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatttgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgaaattaaaaacaagatgttgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattacggttctcggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70371" stop="69372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70071" g_stop="69672" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="400" r_length="400" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E279590" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279590" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70071" e_stop="69672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAG</genome_strand>
        <mrna_strand>AAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E293279" ref_strand="+" ref_description="SGN-E293279 [cLET-18-M1]">
      <seq>tttttctctcaaaaaaaactgtgtttctttcatcttaagaaacgatttctttctgtttctttcgaattccattgaggatggtagaaatcctcaagaacttgttaatgatctcccctttaacaccaaaaagggggatctctggttcatctgctttctcctttggctcttgcaaagaaagctggtacttccgctgtctcagggctgacccttaaacgctgttctcttttcccacaatttcaggaaatcgtgaatccttcttctttaggctctgaattgtatgattgaaaataaattttggaaaattatcagaaaaaaatttgtaattaaaaacaagatgtcgctttacaagccaaagaagaatcaaaccggaaaaggtaaccggattttgattagtattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70382" stop="69384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70082" g_stop="69684" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E293279" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293279" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70082" e_stop="69684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTAC</genome_strand>
        <mrna_strand>TTTTTCTCTCAAAAAAAACTGTGTTTCTTTCATCTTAAGAAACGATTTCTTTCTGTTTCTTTCGAATTCCATTGAGGATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGGTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAAGCTGGTACTTCCGCTGTCTCAGGGCTGACCCTTAAACGCTGTTCTCTTTTCCCACAATTTCAGGAAATCGTGAATCCTTCTTCTTTAGGCTCTGAATTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGTAATTAAAAACAAGATGTCGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E280768" ref_strand="+" ref_description="SGN-E280768 [cLEL-6-A18](-)">
      <seq>ccggtttgattcttctttggcttgtaaagcaacatcttgtttttaatttcaaatttttttctgataattttccaaaatttattttcaatcatacaaatcagagcaaaaagaagaaaaaatcacgatttccagaaattgtgggaaaagcgaacagcgtttaagggtcaacaccgaggcagcggaagtaccagccttctttgcaagagccaaaggagaaagcagatgaaacagagatccccctttttggtgttaaaggggagatcattaacaagttcttgaggatttctaccattcacaatgagatgcgaaagaaaaagaaagaaaacacttcttaagatgaaagaaacaaagtttaattcgagagaaaaacaacgatggatctcgtgccgaattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="69414" stop="70393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69714" g_stop="70091" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E280768" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280768" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69714" e_stop="70091"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTTTGATTCTTCTTTGGCTTGTAAAGCAACATCTTGTTTTTAATTTCAAATTTTTTTCTGATAATTTTCCAAAATTTATTTTCAATCATACAAATCAGAGCAAAAAGAAGAAAAAATCACGATTTCGAGAAATTGTGGGAAAAGCGAACAGCGTTTAAGGGTCAACGCCGAGGCAGCGGAAGTACCAGCCTTCTTTGCAAGAGCCAAAGGAGAAAGCAGATGAAACAGAGATCCCCCTTTTTGGTGTTAAAGGGGAGATCATTAACAAGTTCTTGAGGATTTCTACCATTCACAATGGAATTCGAAAGAAAAAGAAAGAAAACAATTCTTAAGATGAAAGAAACAAAGTTTTTTTCGAGAGAAAAACAACGATGG</genome_strand>
        <mrna_strand>CCGGTTTGATTCTTCTTTGGCTTGTAAAGCAACATCTTGTTTTTAATTTCAAATTTTTTTCTGATAATTTTCCAAAATTTATTTTCAATCATACAAATCAGAGCAAAAAGAAGAAAAAATCACGATTTCCAGAAATTGTGGGAAAAGCGAACAGCGTTTAAGGGTCAACACCGAGGCAGCGGAAGTACCAGCCTTCTTTGCAAGAGCCAAAGGAGAAAGCAGATGAAACAGAGATCCCCCTTTTTGGTGTTAAAGGGGAGATCATTAACAAGTTCTTGAGGATTTCTACCATTCACAATGAGATGCGAAAGAAAAAGAAAGAAAACACTTCTTAAGATGAAAGAAACAAAGTTTAATTCGAGAGAAAAACAACGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310943" ref_strand="+" ref_description="SGN-E310943 [cLEZ-17-B18]">
      <seq>aacttgttaatgatctcccctttaacaccaaaaagggggatctctgtttcatctgctttctcctttggctcttgcaaagaaggctggtacttccgctgcctcggtgttgacccttaaacgctgttcgcttttcccacaatttctggaaatcgtgattttttcttctttttgctctgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="-" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="70287" stop="69509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69987" g_stop="69809" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="179" r_length="179" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="-" ref_id="SGN-E310943" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>179</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310943" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69987" e_stop="69809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATT</genome_strand>
        <mrna_strand>AACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGTGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTGGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E419371" ref_strand="+" ref_description="SGN-E419371 [STM-29-B13]">
      <seq>ctctctttctgcaaaacaccatactattggcattctctctcaacagaaaaatcaaatcaaagcagactattagtaatggggaagaaaaagcagaagattgtgctaccgcctgatcttccaccggaagttcctgatgaagcagtcgaagtatcagatgaagacgtgctttttgtaagcgaaaatcgagaatatactggattcttgtcgaatttggatacgaagtcaattaataagcacgttactcgtgttgccgatgtgaaagaagatgagctagagtctctgtatgaaaggcgattaaagaagaagtcacttgataaagaaacagaaaaacagggactagaggttgatcctgtggatgctcttcctgtgaagacattagatggaaaactttattacaggacagtgccaaaggctacacaaaaatctgaaaacgaagataaagatgaagctaatactaacaacaaagatgctggtattgatgcaagtgtggtgaggctgactaaagcggagaagcgtgccaaattgaagaaaattaggaaagaggctaagaaacaggcaaaagaagggacagaagtagaagatgttgagcaaatacctcaagctgaagtcttggacgaggtgagaaatgatatgacagcagaagaagccaatcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="73365" stop="77914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73476" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73477" i_stop="73666" i_length="190">
            <donor d_prob="0.952" d_score="0.84"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73667" g_stop="73836" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="233" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73837" i_stop="75972" i_length="2136">
            <donor d_prob="0.456" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75973" g_stop="76142" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="403" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76143" i_stop="76224" i_length="82">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76225" g_stop="76433" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="612" r_length="209" r_score="0.976"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="76434" i_stop="77568" i_length="1135">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77569" g_stop="77614" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="658" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E419371" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73476"/>
          <exon e_start="73667" e_stop="73836"/>
          <exon e_start="75973" e_stop="76142"/>
          <exon e_start="76225" e_stop="76433"/>
          <exon e_start="77569" e_stop="77614"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTCTGCAAAAACACCATACTATAATCATTCTCTCTCAAGAGAAAAAAATCAAATTAAAGTGTATGTTCATCTTTCTCTCTGCATATTATACCGATTATTTGCTTGTGCTACTTTGATTTTGTGATTGTGTTCTAATATTCGTGTTCGTTTAAGCAAGTAACTCTTTTTTTGTTGAAATTTTTGCTTAGTGAAGCTCAGGTTATGTTTAGTTGATTTTAGAAGCTCACAGTTTGTAATATACCTCTTGCAGAGATTATTAGTAATGGGGAAGAAAAAGCAAAAGATTGTGCTACCTCCTGATCTTCCACCGGAAGTTCCTGATGAAGCAGTCGAAGTATCAGATGAAGACGTGCTTTTTGTAAGCGAAAATCGAGAATATACTGGATTCTTGTCGAATTTGGATACGAAGTCAATTAATAAGTAAGCAATTATTGGCATGTATATGTGTTTATTCTCACTCTATGTTGTTGGAGCTAATGCACATACAGATATGTTTGTTTTTTTTTAAAATAAATTTTATTTGTAAATGAGCATTTCTCGACATGTTTTTAGGTTGTTTTTGACTTTATTTTTGTGGATTGATGCATAGATAGCGAAAAATTTTCATTTTGATTTGGTAAGTTGGATGATTTGAATGTATTAATCTGTCTCTTTTGTTTGAAAAATGTTCACTCACAAGTCTACATATCCGAAAACTAGAAAAGACACAGCTCTTGCCAAGGGGAATATACTGTTTAATTGATTTGGAGAGACTTATATTTGAAATTATATTTGATATTAGTTATTTTCGGAAAAACGGGTTTTTCGCCTAACGTCTCTTATGATCGGTTGATCAACCTGATAAAAACATATGACCGGTTGATCAGATATCGATTTTCCTAAAGAAGAAGAAAAATCATGGAAGAACGATTTTAAATGCCTAGAGGGAAATTAGCTCTATGTAGGAAGGGAGTTGGAAGAAAGGAGGCAGAGGAGGATTGAGTACAAAGTATTCCAGCCTGCATATGGTGGACAGTTTGGAGGGAGAGAAACTTAAGACATTTTGAAGATAGAAGAAATTCCATTCAGAAGATCATGATGAATAGCTTCAGCCTTATCTATTTTTGGTATAAGCAGGTTTTAACGGGGGAAATGGGAGATTTAGTAGATTTTCATAGGCAAAGTGTAAGAAAATAGATGTACAAATGAACCCCCATACTCCTTTTTTGTAATTGTAAATCCTCTCCCTCGGCATTTGGTGCTGAGTTTTCTATGAATACGAGTTACCTTTATCTCAAAAAATTGTAGGATACCTATCTATTGTATAACTTGTGCTTCATTTGACACTTCCACATATTAATGTACTATATGGAGTATGCTAGAGCTTTATCTAAGTGGCCAGTGTCTTTTCCCACTGTATTGGTGTTATCCTTGCCTTCATGCTCATCTCTTATTGAAAAATTCTATTCAGTGACGTGTTGGAGAGTATTTTCCAAGATACAATAGGTAAAAGGTTAAACTTCTGGCATTGAAGGGTACTATGTTGGTGCTTTCTGCCAAAATCATCTCATCATTAAAAAAGATTTACTTGATGATCCAACTGTGTATTTTACATTTCCCCCAAATAAATGGGAGGCCAATAAACTCCTCTCTCATGATCAGGATTTCCAAACTTAAGATTGTTATTTGACTTAAAATTATTGAAGTGCTACAAACATTGCTGGATCAAATAGTAGATTTTAGTTAGAAAAGATCAAATAGGTAGAAAAGCAAGTCTATCTCAAAGAATTTGCTTCCCTTTTCTACTTCGGAATCCATTTTTTGGCCGCAGAAGTGGGTTTAATCAGGGAAACAATTCTTCCACGTTACACATGTTTGAGCTTTGGCAGGCATAATAGCTCATTTGCAATCAATCCATTCTCTCCCGTCTGAATGAGTTATTCAAACTGACACAAGATTGACAGCTGAGCATATTTTCCTGCCAGATTCTATTGCGGCCTGCAGTAATGTTTGGTTCACAGTGAACTTTTTTTTTCCTTTTCGAAAATCTAGTTTTAAGTGGTCGCTAAATTACCTTTAGCTCCCACAGTTTGACTCTTTGTTCAGAAGCTCCAGAGCTCAATTAGTTTAATGCTTATCCTAGTTTTGTAGCTTGTCAATGGGCCCATAATTCACCAATTCGAAGAAGTTCACCATATCCTGGAATTTTCTTAAGCTCTTGTAATCTTCTCACAGTATCCTGGATTATTGAATAGTTCACCCTGGTGCCCCTGTAATTGGGGGTCGTTTTCATTTCCCACTCTTGACGTTTTCCTTGGCGTTTGGCCCTTTTTCAGGTTAATCTATCTGACACTGCAACTTTTATTTGTTCAACAGGTTGCTATGTTTCTTAAAAATTGTGAGAGTGATGTTTCCTTTTGTATTTGCTTGAGTTGTATTTTTTGCTATGTTCAACATTAGAGTACGATTTAGTTAGAACATCTGTTTCTTTAAGTTTCTTATTTCCTATTCCAGTCTTATGCAAGTCTATTAACTTTCTAAAGTCCTATAACTGATCTTATTATTGTTATTGGAAAGGCATGTTACTCGTGTTGCCGATGTGAAAGAAGATGAGCTAGAGTCTCTGTATGAAAGGCGATTAAAGAAGAAGTCACTTGATAAAGAAACAGAAAAACAGGGACTAGAGGTTGATCCTGTGGATGCTCTTCCTGTGAAGACATTAGATGGAAAACTTTATTACAGGACAGGTACTGAAAGCTCTTGTTCAGTCATCATCACCCGGTATTTTACCTGCTGTAACCGTTAATTGAGTCTTTTCATGATATACAGTGCCAAAGGCTACACAAAAATCTGAAAACGAAGATAAAGATGAAGCTACTACTAACAACAAAGAGGCTGGTATTGATGCAAGTGTGGTGAGGCTGACTAAAGCAGAGAAGCGTGCCAAATTGAAGAAAATTAGGAAAGAGGCCAAGAAACAGGCAAAAGAGGGGACAGAAGTAGAAGATGTTGAGCAAATACCTCAAGCTGAAGTCTTGGTATGTGCATTATATATCCAAAAGATATGCTGTAGTGCTTGAATATCTATCCTGAAGTAATTTTAAATTGTAGATTACAATGCAAAGAGTGAAAGAGGCACTTGAACTTTTGAAAAGAGTATATATGATGAGAGTTGGGTACTACATAAGTTAATGCTGGCACCCCTAGTTGCACTGTCACTATACTGTTAATTAGTGGAATTAATACCTGGTTTCGTTGCTTCATGTTTTCCTAATTTTGGTAAAGGAGGAGATCTTAAACCACTTGGATTGGGGTGATCCTTGTAAGAGGTGTTGTAGCGTGATTTGAGCTAGGCATTTCTGTGCGAACTATTCTGGAAAATGATACTCCCTCGGACCCAAAAATCAGAATGACAAACCTGTCTTTAGCTGTCCCAAACACACTTCCTCTTTTTTTGTCAATACTCTTTCAATATATAGTATGTACGAAGTTTTGTGAGCTAATTTTTATATTCTTCTCCAACAAAATAACCACTGTTATTAAAAGCCATCAGCCATCGTTAAATAACGTAGCAATGCAAAATAAGAGATTATTGCCTTATGGAAGAAACTATGAATTTTAGATGGTGAGGTGTAAAGTAAACTTACAAGAAGCGGTTGATTTTCTGAATCGAATTTCACTGGATAAAAAAAGACAAATAATAAAAAAGAACAGGAAAAATAGGGCTTTTTTATATCAAGTGTACTTGGGACTTCTCTTATATACACTTTAGTGTCCTCTTTGCTGCTGTCTTCTTCTTCTTGAGCTTGTAGCACCTTCTCTTCTACTACCTTTGTTTTTCTGCTCCTTGGGAATCACATCTTTTTTTGATAACTGTGGTGTCCCAGCCAGCTTCTGAATCACTTCCTTCTTCTTCTGATTTCTCTCTTCAACTCTCTTTGTTCAATCACTTAAACAAAAAATTTAAACTAAATGCCAATAATTCTCTTCTGTATTTGATGAATTGGAAAATAGCTTTGCAATTCTATTTATAATTCAGTGGCGTTGTTGAAGTATATATTACTGATGTTTACTTCAAATTCTAGGATTTAAATTGTCATTACCTTAACTGTGGTAAAAAAAGACACTTACATTTGGATACAAGTATATTGATTTTTACTTCCTTGGTGTTAGGACGAAGTGAGAAATGATATGACAGCAGAAGAGGCCAATCAAAAAA</genome_strand>
        <mrna_strand>CTCTCTTTCTGC-AAAACACCATACTATTGGCATTCTCTCTCAACAG--AAAAATCAAATCAAAGC..............................................................................................................................................................................................AGACTATTAGTAATGGGGAAGAAAAAGCAGAAGATTGTGCTACCGCCTGATCTTCCACCGGAAGTTCCTGATGAAGCAGTCGAAGTATCAGATGAAGACGTGCTTTTTGTAAGCGAAAATCGAGAATATACTGGATTCTTGTCGAATTTGGATACGAAGTCAATTAATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGTTACTCGTGTTGCCGATGTGAAAGAAGATGAGCTAGAGTCTCTGTATGAAAGGCGATTAAAGAAGAAGTCACTTGATAAAGAAACAGAAAAACAGGGACTAGAGGTTGATCCTGTGGATGCTCTTCCTGTGAAGACATTAGATGGAAAACTTTATTACAGGACAG..................................................................................TGCCAAAGGCTACACAAAAATCTGAAAACGAAGATAAAGATGAAGCTAATACTAACAACAAAGATGCTGGTATTGATGCAAGTGTGGTGAGGCTGACTAAAGCGGAGAAGCGTGCCAAATTGAAGAAAATTAGGAAAGAGGCTAAGAAACAGGCAAAAGAAGGGACAGAAGTAGAAGATGTTGAGCAAATACCTCAAGCTGAAGTCTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGTGAGAAATGATATGACAGCAGAAGAAGCCAATCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E443983" ref_strand="+" ref_description="SGN-E443983 [cSTA-40-P22]">
      <seq>ctctctttctgcaaaacaccatactattggcattctctctcaacagaaaaatcaaatcaaagcagactattagtaatggggaagaaaaagcagaagattgtgctaccgcctgatcttccaccggaagttcctgatgaagcagtcgaagtatcagatgaagacgtgctttttgtaagcgaaaatcgagaatatactggattcttgtcgaatttggatacgaagtcaattaataagcacgttactcgtgttgccgatgtgaaagaagatgagctagagtctctgtatgaaaggcgattaaagaagaagtcacttgataaagaaacagaaaaacagggactagaggttgatcctgtggatgctcttcctgtgaagacattagatggaaaactttattacaggacagtgccaaaggctacacaaaaatctgaaaacgaagataaagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="73365" stop="76566"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73411" g_stop="73476" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.848"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73477" i_stop="73666" i_length="190">
            <donor d_prob="0.952" d_score="0.84"/>
            <acceptor a_prob="0.985" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73667" g_stop="73836" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="233" r_length="170" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73837" i_stop="75972" i_length="2136">
            <donor d_prob="0.456" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="75973" g_stop="76142" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="403" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76143" i_stop="76224" i_length="82">
            <donor d_prob="0.895" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="76225" g_stop="76266" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="445" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E443983" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E443983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73411" e_stop="73476"/>
          <exon e_start="73667" e_stop="73836"/>
          <exon e_start="75973" e_stop="76142"/>
          <exon e_start="76225" e_stop="76266"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCCTTTCTGCAAAAACACCATACTATAATCATTCTCTCTCAAGAGAAAAAAATCAAATTAAAGTGTATGTTCATCTTTCTCTCTGCATATTATACCGATTATTTGCTTGTGCTACTTTGATTTTGTGATTGTGTTCTAATATTCGTGTTCGTTTAAGCAAGTAACTCTTTTTTTGTTGAAATTTTTGCTTAGTGAAGCTCAGGTTATGTTTAGTTGATTTTAGAAGCTCACAGTTTGTAATATACCTCTTGCAGAGATTATTAGTAATGGGGAAGAAAAAGCAAAAGATTGTGCTACCTCCTGATCTTCCACCGGAAGTTCCTGATGAAGCAGTCGAAGTATCAGATGAAGACGTGCTTTTTGTAAGCGAAAATCGAGAATATACTGGATTCTTGTCGAATTTGGATACGAAGTCAATTAATAAGTAAGCAATTATTGGCATGTATATGTGTTTATTCTCACTCTATGTTGTTGGAGCTAATGCACATACAGATATGTTTGTTTTTTTTTAAAATAAATTTTATTTGTAAATGAGCATTTCTCGACATGTTTTTAGGTTGTTTTTGACTTTATTTTTGTGGATTGATGCATAGATAGCGAAAAATTTTCATTTTGATTTGGTAAGTTGGATGATTTGAATGTATTAATCTGTCTCTTTTGTTTGAAAAATGTTCACTCACAAGTCTACATATCCGAAAACTAGAAAAGACACAGCTCTTGCCAAGGGGAATATACTGTTTAATTGATTTGGAGAGACTTATATTTGAAATTATATTTGATATTAGTTATTTTCGGAAAAACGGGTTTTTCGCCTAACGTCTCTTATGATCGGTTGATCAACCTGATAAAAACATATGACCGGTTGATCAGATATCGATTTTCCTAAAGAAGAAGAAAAATCATGGAAGAACGATTTTAAATGCCTAGAGGGAAATTAGCTCTATGTAGGAAGGGAGTTGGAAGAAAGGAGGCAGAGGAGGATTGAGTACAAAGTATTCCAGCCTGCATATGGTGGACAGTTTGGAGGGAGAGAAACTTAAGACATTTTGAAGATAGAAGAAATTCCATTCAGAAGATCATGATGAATAGCTTCAGCCTTATCTATTTTTGGTATAAGCAGGTTTTAACGGGGGAAATGGGAGATTTAGTAGATTTTCATAGGCAAAGTGTAAGAAAATAGATGTACAAATGAACCCCCATACTCCTTTTTTGTAATTGTAAATCCTCTCCCTCGGCATTTGGTGCTGAGTTTTCTATGAATACGAGTTACCTTTATCTCAAAAAATTGTAGGATACCTATCTATTGTATAACTTGTGCTTCATTTGACACTTCCACATATTAATGTACTATATGGAGTATGCTAGAGCTTTATCTAAGTGGCCAGTGTCTTTTCCCACTGTATTGGTGTTATCCTTGCCTTCATGCTCATCTCTTATTGAAAAATTCTATTCAGTGACGTGTTGGAGAGTATTTTCCAAGATACAATAGGTAAAAGGTTAAACTTCTGGCATTGAAGGGTACTATGTTGGTGCTTTCTGCCAAAATCATCTCATCATTAAAAAAGATTTACTTGATGATCCAACTGTGTATTTTACATTTCCCCCAAATAAATGGGAGGCCAATAAACTCCTCTCTCATGATCAGGATTTCCAAACTTAAGATTGTTATTTGACTTAAAATTATTGAAGTGCTACAAACATTGCTGGATCAAATAGTAGATTTTAGTTAGAAAAGATCAAATAGGTAGAAAAGCAAGTCTATCTCAAAGAATTTGCTTCCCTTTTCTACTTCGGAATCCATTTTTTGGCCGCAGAAGTGGGTTTAATCAGGGAAACAATTCTTCCACGTTACACATGTTTGAGCTTTGGCAGGCATAATAGCTCATTTGCAATCAATCCATTCTCTCCCGTCTGAATGAGTTATTCAAACTGACACAAGATTGACAGCTGAGCATATTTTCCTGCCAGATTCTATTGCGGCCTGCAGTAATGTTTGGTTCACAGTGAACTTTTTTTTTCCTTTTCGAAAATCTAGTTTTAAGTGGTCGCTAAATTACCTTTAGCTCCCACAGTTTGACTCTTTGTTCAGAAGCTCCAGAGCTCAATTAGTTTAATGCTTATCCTAGTTTTGTAGCTTGTCAATGGGCCCATAATTCACCAATTCGAAGAAGTTCACCATATCCTGGAATTTTCTTAAGCTCTTGTAATCTTCTCACAGTATCCTGGATTATTGAATAGTTCACCCTGGTGCCCCTGTAATTGGGGGTCGTTTTCATTTCCCACTCTTGACGTTTTCCTTGGCGTTTGGCCCTTTTTCAGGTTAATCTATCTGACACTGCAACTTTTATTTGTTCAACAGGTTGCTATGTTTCTTAAAAATTGTGAGAGTGATGTTTCCTTTTGTATTTGCTTGAGTTGTATTTTTTGCTATGTTCAACATTAGAGTACGATTTAGTTAGAACATCTGTTTCTTTAAGTTTCTTATTTCCTATTCCAGTCTTATGCAAGTCTATTAACTTTCTAAAGTCCTATAACTGATCTTATTATTGTTATTGGAAAGGCATGTTACTCGTGTTGCCGATGTGAAAGAAGATGAGCTAGAGTCTCTGTATGAAAGGCGATTAAAGAAGAAGTCACTTGATAAAGAAACAGAAAAACAGGGACTAGAGGTTGATCCTGTGGATGCTCTTCCTGTGAAGACATTAGATGGAAAACTTTATTACAGGACAGGTACTGAAAGCTCTTGTTCAGTCATCATCACCCGGTATTTTACCTGCTGTAACCGTTAATTGAGTCTTTTCATGATATACAGTGCCAAAGGCTACACAAAAATCTGAAAACGAAGATAAAGATG</genome_strand>
        <mrna_strand>CTCTCTTTCTGC-AAAACACCATACTATTGGCATTCTCTCTCAACAG--AAAAATCAAATCAAAGC..............................................................................................................................................................................................AGACTATTAGTAATGGGGAAGAAAAAGCAGAAGATTGTGCTACCGCCTGATCTTCCACCGGAAGTTCCTGATGAAGCAGTCGAAGTATCAGATGAAGACGTGCTTTTTGTAAGCGAAAATCGAGAATATACTGGATTCTTGTCGAATTTGGATACGAAGTCAATTAATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGTTACTCGTGTTGCCGATGTGAAAGAAGATGAGCTAGAGTCTCTGTATGAAAGGCGATTAAAGAAGAAGTCACTTGATAAAGAAACAGAAAAACAGGGACTAGAGGTTGATCCTGTGGATGCTCTTCCTGTGAAGACATTAGATGGAAAACTTTATTACAGGACAG..................................................................................TGCCAAAGGCTACACAAAAATCTGAAAACGAAGATAAAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E584338" ref_strand="+" ref_description="SGN-E584338 [10162]">
      <seq>tgagctagagtctctgtatgaaaggcgattaaagaagaagtcacttgataaagaaacagaaaaacagggactagaggttgatcctgtggatgctcttcctgtgaagaccttagatggagaactttattacaggacagtgccaaaggctacacaaaaatctgaaaacgaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0178P03-2HRzC/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0178P03.1" temp_strand="+" temp_description="C04HBa0178P03.1  CU914755.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0178P03 sequenced_by:sanger upload_account_name:uk">
        <position start="75706" stop="76558"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76006" g_stop="76142" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76143" i_stop="76224" i_length="82">
            <donor d_prob="0.895" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76225" g_stop="76258" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="171" r_length="34" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0178P03.1" gen_strand="+" ref_id="SGN-E584338" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0178P03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E584338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76006" e_stop="76142"/>
          <exon e_start="76225" e_stop="76258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTAGAGTCTCTGTATGAAAGGCGATTAAAGAAGAAGTCACTTGATAAAGAAACAGAAAAACAGGGACTAGAGGTTGATCCTGTGGATGCTCTTCCTGTGAAGACATTAGATGGAAAACTTTATTACAGGACAGGTACTGAAAGCTCTTGTTCAGTCATCATCACCCGGTATTTTACCTGCTGTAACCGTTAATTGAGTCTTTTCATGATATACAGTGCCAAAGGCTACACAAAAATCTGAAAACGAAGA</genome_strand>
        <mrna_strand>TGAGCTAGAGTCTCTGTATGAAAGGCGATTAAAGAAGAAGTCACTTGATAAAGAAACAGAAAAACAGGGACTAGAGGTTGATCCTGTGGATGCTCTTCCTGTGAAGACCTTAGATGGAGAACTTTATTACAGGACAG..................................................................................TGCCAAAGGCTACACAAAAATCTGAAAACGAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>114</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6042" PGL_stop="900"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6042" e_stop="5362"/>
            <exon e_start="4747" e_stop="4529"/>
            <exon e_start="3967" e_stop="3261"/>
            <exon e_start="2662" e_stop="1866"/>
            <exon e_start="1411" e_stop="900"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.820" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.925" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6042" e_stop="5362" e_length="681"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.820">
            <gDNA_intron_boundary i_start="5361" i_stop="4748" i_length="614"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4747" e_stop="4529" e_length="219"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4528" i_stop="3968" i_length="561"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3967" e_stop="3261" e_length="707"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="3260" i_stop="2663" i_length="598"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="2662" e_stop="1866" e_length="797"/>
          </exon>
          <intron i_serial="4" don_prob="0.925" acc_prob="0.999">
            <gDNA_intron_boundary i_start="1865" i_stop="1412" i_length="454"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="1411" e_stop="900" e_length="512"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6042" stop="5375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6020" stop="5362"/>
              <exon start="4747" stop="4529"/>
              <exon start="3967" stop="3261"/>
              <exon start="2662" stop="1866"/>
              <exon start="1411" stop="942"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5982" stop="5362"/>
              <exon start="4747" stop="4718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312327" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5926" stop="5648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5885" stop="5362"/>
              <exon start="4747" stop="4608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577290" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5783" stop="5362"/>
              <exon start="4747" stop="4569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5383" stop="5362"/>
              <exon start="4747" stop="4529"/>
              <exon start="3967" stop="3905"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E442229" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3663" stop="3261"/>
              <exon start="2662" stop="2103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427208" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3629" stop="3261"/>
              <exon start="2662" stop="2090"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3520" stop="3261"/>
              <exon start="2662" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3473" stop="3261"/>
              <exon start="2662" stop="2431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477919" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2519" stop="1866"/>
              <exon start="1411" stop="1179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2303" stop="1866"/>
              <exon start="1411" stop="1361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2066" stop="1866"/>
              <exon start="1411" stop="914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E589054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2062" stop="1866"/>
              <exon start="1411" stop="1040"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2027" stop="1866"/>
              <exon start="1411" stop="945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E485556" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1923" stop="1866"/>
              <exon start="1411" stop="945"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427207" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1393" stop="948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E598024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1362" stop="900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1293" stop="973"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E611883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1154" stop="900"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615604" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTCATGTTACCCCACCACCATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATG : ATCCTATTTCACTTGTGAGAGATCATCGCACAAAAGAAATCTTAACAGCTCAAGGTATATCAGTGCGTTCCTTTAATGCTGATTTGCTCTATGAACCATGGGAAGTTAATGACGATGAAGGTCGCCCGTTCACAACATTTTCTGCTTTTTGGGAGAAATGCCTTAGCATGCCTTATGATCCAGAAGCTCCACTTCTTCCTCCCAAAAGGATTATATCTG : GTGATGCATCAAGATGCCCTTCAGACAACTTGGTATTTGAAGATGAATCAGAGAAAGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGCTGGAGTAATGCTGATAAAGCACTAACTACTTTCGTTAATGGACCATTACTTGAGTACTCGCAGAACCGTCGGAAAGCTGATAGTGCAACAACATCCTTTCTATCTCCACATTTACATTTTGGGGAAGTCAGTGTTCGTAAGGTATTCCATTTTGTTCGCATCAAGCAAGTTCTCTGGGCCAATGAAGGAAATAAAGCTGGTGAAGAGAGTGTTAATTTGTTCCTTAAGTCCATTGGGCTGAGGGAGTACTCAAGATACATGAGTTTTAATCATCCTTATAGCCATGAAAGGCCCCTTCTTGGTCACCTAAGGTACTTCCCATGGGTAGTGGATGAAGGCTACTTTAAGGCATGGAGACAAGGTAGAACAGGTTATCCTTTGGTTGATGCTGGTATGAGAGAGTTATGGGCAACTGGTTGGCTTCATGATCGTATCCGAGTCGTGGTATCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGAGGTGGGGGATGAAGTATTTTTGGGACACATTGTTAGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATATATCTCTGGTACCCTACCTGATGGTCGTGAGCTTGATCGGATTGATAATCCACAG : TTTGTGGGATACAAGTGTGACCCTCATGGGGAATATGTCCGGCGGTGGCTTCCTGAACTTGCTAGGCTGCCCACCGAATGGATACACCATCCATGGAATGCACCAGAATCTGTGCTTGAAGCTGCTGGCATTGAGCTGGGTTCCAATTATCCTCTTCCTATAGTTGAAATTGATTCAGCAAAAGTTAGACTAGAACAAGCCCTATCACAAATGTGGCAGAATGATGCAGCTGCAAGAGCTGCGATTGAGAATGGTATGGAAGAAGGACATGGTGACTCTGCTGACTCCCCAATAGCATTTCCTCAGGCCATGCATATGGAAATGGACCATGAACCAGTCAGGAACAACCCTGTAATAGTTACTGTTCGACGCTATGAAGATCAAATGGTGCCAAGCATGACGTCATCTTTGTTCAGAGCTGAAGATGAAGAGAACTCCGTGGACATTAGGAATTCAGTTGTGGAAAGTAGGGCAGAAGTTCCAACAGACATCAATGTAGCTGAAGTTCATAGGAGAGACACGCGTGACCAAGCCGTCATGCAAACTGCTCGAACCAATGCTACCCCACATTTTAATTTTGCGGTAGGTAGGAGGAATTCTGAAGATTCAACAGCAGAATCTTCCAGTAGTACTAGAGAAAGGGATGGGGGTGTAGTGCCTACATGGTCTCCCTCAAGTAGTAACTATTCGGACCAATATGTTGGTGATGATAATGGTATTGGGACCAGTTCATCTTACTTGCAAAGGCATCCACAATCTCACCAGCTAATGAACTGGCAGCGGCTTTCTCAAACAGG : GTGATCATTTATGTGGAGTTACGATAGCAACAAGGCGGAGAAGCAAGTGGCTAATACAGACATTTGGCTCAGCACATTTAGTACAGCATTCATCTACTCTTTCTCTCATAGTCCTGACCTGATCAGCCATCTTTGTGTCTATATCTCTAATTGATCAGGTGGTTCGTCTGGATTTTCATCCTCATCTGTCGGGCATCCCCATTTACCTATTATACCATATATGTGTCTCTGCTGTATAGTATAGAAGTTTTTCATAAGGCCAAATAAGTGTTAGAAAGAGGTTGCAGTCCTCTGTCAAGCTCACACTTGTGCCTTTTGTTTTTCCTTCTCTTTTCTGCTACTTACATTTTGATGGCAATAACGATTATCTGAAGTCCTGGAACTAATTAGATTTTTGTGGATATCATAGTTTCAAACTCTGTTTGACGGATGTACATGTGGTTTAAGCAGCTTCATCTCATATTTTTGTTATGGGAACATTGTCATTATTCTATAAGATTTCTAGTTTGAAC</gDNA_template>
            <first_frame> V  L  M  L  P  H  H  H  N  Q  S  P  S  I  S  L  S  P  P  S  F  S  G  E  V  C  F  F  G  W  T  M  P  I  V  T  S  Q  E  *  H  L  I  I  H  Q  R  I  T  F  G  V  C  *  S  *  V  L  Y  *  N  L  P  K  K  N  H  L  C  N  L  Y  L  L  S  E  S  Y  R  E  Q  S  K  Y  R  *  D  *  P  Q  Y  T  S  V  *  E  R  L  N  N  M  V  F  T  *  *  E  R  K  I  E  R  K  R  L  V  F  G  V  V  E  G  R  C  Q  V  V  V  V  A  *  Y  G  L  E  G  I  *  E  W  K  I  T  L  L  W  L  L  E  L  E  Q  G  Q  L  L  L  C  L  F  M  L  L  K  K  K  G  I  I  I  L  V  E  F  Q  D  G  G  L  S  R  V  W  L  I  L  I  H  L  *  R  V  L  E  P  P  L  L  Q  R  D  L  L  I  V  F  L  L  F  L  K  L  L  N  L  L  V  L  L  S  S  S  S  I  I  C  M  :  I  L  F  H  L  *  E  I  I  A  Q  K  K  S  *  Q  L  K  V  Y  Q  C  V  P  L  M  L  I  C  S  M  N  H  G  K  L  M  T  M  K  V  A  R  S  Q  H  F  L  L  F  G  R  N  A  L  A  C  L  M  I  Q  K  L  H  F  F  L  P  K  G  L  Y  L  :  V  M  H  Q  D  A  L  Q  T  T  W  Y  L  K  M  N  Q  R  K  E  A  M  H  F  L  L  G  H  G  H  L  A  G  V  M  L  I  K  H  *  L  L  S  L  M  D  H  Y  L  S  T  R  R  T  V  G  K  L  I  V  Q  Q  H  P  F  Y  L  H  I  Y  I  L  G  K  S  V  F  V  R  Y  S  I  L  F  A  S  S  K  F  S  G  P  M  K  E  I  K  L  V  K  R  V  L  I  C  S  L  S  P  L  G  *  G  S  T  Q  D  T  *  V  L  I  I  L  I  A  M  K  G  P  F  L  V  T  *  G  T  S  H  G  *  W  M  K  A  T  L  R  H  G  D  K  V  E  Q  V  I  L  W  L  M  L  V  *  E  S  Y  G  Q  L  V  G  F  M  I  V  S  E  S  W  Y  L  V  S  L  *  R  F  C  S  F  H  G  G  G  G  *  S  I  F  G  T  H  C  *  M  Q  I  L  R  V  M  L  L  V  G  N  I  S  L  V  P  Y  L  M  V  V  S  L  I  G  L  I  I  H  S :   L  W  D  T  S  V  T  L  M  G  N  M  S  G  G  G  F  L  N  L  L  G  C  P  P  N  G  Y  T  I  H  G  M  H  Q  N  L  C  L  K  L  L  A  L  S  W  V  P  I  I  L  F  L  *  L  K  L  I  Q  Q  K  L  D  *  N  K  P  Y  H  K  C  G  R  M  M  Q  L  Q  E  L  R  L  R  M  V  W  K  K  D  M  V  T  L  L  T  P  Q  *  H  F  L  R  P  C  I  W  K  W  T  M  N  Q  S  G  T  T  L  *  *  L  L  F  D  A  M  K  I  K  W  C  Q  A  *  R  H  L  C  S  E  L  K  M  K  R  T  P  W  T  L  G  I  Q  L  W  K  V  G  Q  K  F  Q  Q  T  S  M  *  L  K  F  I  G  E  T  R  V  T  K  P  S  C  K  L  L  E  P  M  L  P  H  I  L  I  L  R  *  V  G  G  I  L  K  I  Q  Q  Q  N  L  P  V  V  L  E  K  G  M  G  V  *  C  L  H  G  L  P  Q  V  V  T  I  R  T  N  M  L  V  M  I  M  V  L  G  P  V  H  L  T  C  K  G  I  H  N  L  T  S  *  *  T  G  S  G  F  L  K  Q   : G  D  H  L  C  G  V  T  I  A  T  R  R  R  S  K  W  L  I  Q  T  F  G  S  A  H  L  V  Q  H  S  S  T  L  S  L  I  V  L  T  *  S  A  I  F  V  S  I  S  L  I  D  Q  V  V  R  L  D  F  H  P  H  L  S  G  I  P  I  Y  L  L  Y  H  I  C  V  S  A  V  *  Y  R  S  F  S  *  G  Q  I  S  V  R  K  R  L  Q  S  S  V  K  L  T  L  V  P  F  V  F  P  S  L  F  C  Y  L  H  F  D  G  N  N  D  Y  L  K  S  W  N  *  L  D  F  C  G  Y  H  S  F  K  L  C  L  T  D  V  H  V  V  *  A  A  S  S  H  I  F  V  M  G  T  L  S  L  F  Y  K  I  S  S  L  N </first_frame>
            <second_frame>  F  S  C  Y  P  T  T  I  T  N  H  P  Q  S  H  F  L  L  P  L  S  L  E  R  F  V  F  L  G  G  Q  C  L  *  *  L  H  K  N  S  I  S  S  F  I  K  E  *  H  L  G  F  V  K  V  R  F  F  T  R  I  C  L  K  K  I  I  F  V  I  F  I  S  S  V  K  A  T  G  N  S  Q  S  I  D  K  I  N  P  N  I  L  L  S  K  K  D  S  I  T  W  C  L  H  S  K  R  E  K  *  R  E  K  D  *  S  L  V  L  L  K  E  D  V  R  W  W  L  *  H  S  M  V  *  K  G  S  E  S  G  R  *  P  C  F  G  C  W  S  *  S  R  G  S  Y  C  C  V  Y  L  C  S  *  R  R  R  A  L  L  S  W  *  S  F  K  M  V  A  *  A  E  F  G  S  S  *  F  I  F  E  E  S  W  N  L  P  Y  Y  K  E  I  Y  *  *  Y  F  F  S  S  *  S  C  *  I  Y  W  C  Y  S  A  L  L  Q  S  F  V  * :   S  Y  F  T  C  E  R  S  S  H  K  R  N  L  N  S  S  R  Y  I  S  A  F  L  *  C  *  F  A  L  *  T  M  G  S  *  *  R  *  R  S  P  V  H  N  I  F  C  F  L  G  E  M  P  *  H  A  L  *  S  R  S  S  T  S  S  S  Q  K  D  Y  I  W :   *  C  I  K  M  P  F  R  Q  L  G  I  *  R  *  I  R  E  R  K  Q  C  T  S  C  S  G  M  V  T  W  L  E  *  C  *  *  S  T  N  Y  F  R  *  W  T  I  T  *  V  L  A  E  P  S  E  S  *  *  C  N  N  I  L  S  I  S  T  F  T  F  W  G  S  Q  C  S  *  G  I  P  F  C  S  H  Q  A  S  S  L  G  Q  *  R  K  *  S  W  *  R  E  C  *  F  V  P  *  V  H  W  A  E  G  V  L  K  I  H  E  F  *  S  S  L  *  P  *  K  A  P  S  W  S  P  K  V  L  P  M  G  S  G  *  R  L  L  *  G  M  E  T  R  *  N  R  L  S  F  G  *  C  W  Y  E  R  V  M  G  N  W  L  A  S  *  S  Y  P  S  R  G  I  *  F  L  C  E  G  S  A  A  S  M  E  V  G  D  E  V  F  L  G  H  I  V  R  C  R  S  *  E  *  C  S  W  L  A  I  Y  L  W  Y  P  T  *  W  S  *  A  *  S  D  *  *  S  T   : V  C  G  I  Q  V  *  P  S  W  G  I  C  P  A  V  A  S  *  T  C  *  A  A  H  R  M  D  T  P  S  M  E  C  T  R  I  C  A  *  S  C  W  H  *  A  G  F  Q  L  S  S  S  Y  S  *  N  *  F  S  K  S  *  T  R  T  S  P  I  T  N  V  A  E  *  C  S  C  K  S  C  D  *  E  W  Y  G  R  R  T  W  *  L  C  *  L  P  N  S  I  S  S  G  H  A  Y  G  N  G  P  *  T  S  Q  E  Q  P  C  N  S  Y  C  S  T  L  *  R  S  N  G  A  K  H  D  V  I  F  V  Q  S  *  R  *  R  E  L  R  G  H  *  E  F  S  C  G  K  *  G  R  S  S  N  R  H  Q  C  S  *  S  S  *  E  R  H  A  *  P  S  R  H  A  N  C  S  N  Q  C  Y  P  T  F  *  F  C  G  R  *  E  E  F  *  R  F  N  S  R  I  F  Q  *  Y  *  R  K  G  W  G  C  S  A  Y  M  V  S  L  K  *  *  L  F  G  P  I  C  W  *  *  *  W  Y  W  D  Q  F  I  L  L  A  K  A  S  T  I  S  P  A  N  E  L  A  A  A  F  S  N  R  :  V  I  I  Y  V  E  L  R  *  Q  Q  G  G  E  A  S  G  *  Y  R  H  L  A  Q  H  I  *  Y  S  I  H  L  L  F  L  S  *  S  *  P  D  Q  P  S  L  C  L  Y  L  *  L  I  R  W  F  V  W  I  F  I  L  I  C  R  A  S  P  F  T  Y  Y  T  I  Y  V  S  L  L  Y  S  I  E  V  F  H  K  A  K  *  V  L  E  R  G  C  S  P  L  S  S  S  H  L  C  L  L  F  F  L  L  F  S  A  T  Y  I  L  M  A  I  T  I  I  *  S  P  G  T  N  *  I  F  V  D  I  I  V  S  N  S  V  *  R  M  Y  M  W  F  K  Q  L  H  L  I  F  L  L  W  E  H  C  H  Y  S  I  R  F  L  V  *   </second_frame>
            <third_frame>   S  H  V  T  P  P  P  *  P  I  T  L  N  L  T  F  S  S  L  F  L  W  R  G  L  F  F  W  V  D  N  A  Y  S  N  F  T  R  I  A  S  H  H  S  S  K  N  N  I  W  G  L  L  K  L  G  S  L  L  E  F  A  *  K  K  S  S  L  *  S  L  S  P  Q  *  K  L  Q  G  T  V  K  V  *  I  R  L  T  P  I  Y  F  C  L  R  K  T  Q  *  H  G  V  Y  I  V  R  E  K  N  R  E  K  K  T  S  L  W  C  C  *  R  K  M  S  G  G  G  C  S  I  V  W  F  R  R  D  L  R  V  E  D  N  P  A  L  A  A  G  V  R  A  G  A  V  I  A  V  F  I  Y  A  P  E  E  E  G  H  Y  Y  P  G  R  V  S  R  W  W  L  K  Q  S  L  A  H  L  D  S  S  L  K  S  L  G  T  S  L  I  T  K  R  S  T  D  S  I  S  S  L  L  E  V  V  K  S  T  G  A  T  Q  L  F  F  N  H  L  Y   : D  P  I  S  L  V  R  D  H  R  T  K  E  I  L  T  A  Q  G  I  S  V  R  S  F  N  A  D  L  L  Y  E  P  W  E  V  N  D  D  E  G  R  P  F  T  T  F  S  A  F  W  E  K  C  L  S  M  P  Y  D  P  E  A  P  L  L  P  P  K  R  I  I  S   : G  D  A  S  R  C  P  S  D  N  L  V  F  E  D  E  S  E  K  G  S  N  A  L  L  A  R  A  W  S  P  G  W  S  N  A  D  K  A  L  T  T  F  V  N  G  P  L  L  E  Y  S  Q  N  R  R  K  A  D  S  A  T  T  S  F  L  S  P  H  L  H  F  G  E  V  S  V  R  K  V  F  H  F  V  R  I  K  Q  V  L  W  A  N  E  G  N  K  A  G  E  E  S  V  N  L  F  L  K  S  I  G  L  R  E  Y  S  R  Y  M  S  F  N  H  P  Y  S  H  E  R  P  L  L  G  H  L  R  Y  F  P  W  V  V  D  E  G  Y  F  K  A  W  R  Q  G  R  T  G  Y  P  L  V  D  A  G  M  R  E  L  W  A  T  G  W  L  H  D  R  I  R  V  V  V  S  S  F  F  V  K  V  L  Q  L  P  W  R  W  G  M  K  Y  F  W  D  T  L  L  D  A  D  L  E  S  D  A  L  G  W  Q  Y  I  S  G  T  L  P  D  G  R  E  L  D  R  I  D  N  P  Q  :  F  V  G  Y  K  C  D  P  H  G  E  Y  V  R  R  W  L  P  E  L  A  R  L  P  T  E  W  I  H  H  P  W  N  A  P  E  S  V  L  E  A  A  G  I  E  L  G  S  N  Y  P  L  P  I  V  E  I  D  S  A  K  V  R  L  E  Q  A  L  S  Q  M  W  Q  N  D  A  A  A  R  A  A  I  E  N  G  M  E  E  G  H  G  D  S  A  D  S  P  I  A  F  P  Q  A  M  H  M  E  M  D  H  E  P  V  R  N  N  P  V  I  V  T  V  R  R  Y  E  D  Q  M  V  P  S  M  T  S  S  L  F  R  A  E  D  E  E  N  S  V  D  I  R  N  S  V  V  E  S  R  A  E  V  P  T  D  I  N  V  A  E  V  H  R  R  D  T  R  D  Q  A  V  M  Q  T  A  R  T  N  A  T  P  H  F  N  F  A  V  G  R  R  N  S  E  D  S  T  A  E  S  S  S  S  T  R  E  R  D  G  G  V  V  P  T  W  S  P  S  S  S  N  Y  S  D  Q  Y  V  G  D  D  N  G  I  G  T  S  S  S  Y  L  Q  R  H  P  Q  S  H  Q  L  M  N  W  Q  R  L  S  Q  T  G :   *  S  F  M  W  S  Y  D  S  N  K  A  E  K  Q  V  A  N  T  D  I  W  L  S  T  F  S  T  A  F  I  Y  S  F  S  H  S  P  D  L  I  S  H  L  C  V  Y  I  S  N  *  S  G  G  S  S  G  F  S  S  S  S  V  G  H  P  H  L  P  I  I  P  Y  M  C  L  C  C  I  V  *  K  F  F  I  R  P  N  K  C  *  K  E  V  A  V  L  C  Q  A  H  T  C  A  F  C  F  S  F  S  F  L  L  L  T  F  *  W  Q  *  R  L  S  E  V  L  E  L  I  R  F  L  W  I  S  *  F  Q  T  L  F  D  G  C  T  C  G  L  S  S  F  I  S  Y  F  C  Y  G  N  I  V  I  I  L  *  D  F  *  F  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5680" stop="5362"/>
                    <exon start="4747" stop="4529"/>
                    <exon start="3967" stop="3261"/>
                    <exon start="2662" stop="1866"/>
                    <exon start="1411" stop="1408"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>2043</number_coding_nucleotides>
                  <number_encoded_amino_acids>681</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSLAHLDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTKEILTAQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRIISGDASRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATTSFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFVGYKCDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVRLEQALSQMWQNDAAARAAIENGMEEGHGDSADSPIAFPQAMHMEMDHEPVRNNPVIVTVRRYEDQMVPSMTSSLFRAEDEENSVDIRNSVVESRAEVPTDINVAEVHRRDTRDQAVMQTARTNATPHFNFAVGRRNSEDSTAESSSSTRERDGGVVPTWSPSSSNYSDQYVGDDNGIGTSSSYLQRHPQSHQLMNWQRLSQTG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6042" e_stop="5285"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="6042" e_stop="5285" e_length="758"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6042" stop="5375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5926" stop="5648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337477" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5717" stop="5285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5717" stop="5285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5716" stop="5285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5716" stop="5285"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTCTCATGTTACCCCACCACCATAACCAATCACCCTCAATCTCACTTTCTCCTCCCTCTTTCTCTGGAGAGGTTTGTTTTTTTGGGTGGACAATGCCTATAGTAACTTCACAAGAATAGCATCTCATCATTCATCAAAGAATAACATTTGGGGTTTGTTAAAGTTAGGTTCTTTACTAGAATTTGCCTAAAAAAAATCATCTTTGTAATCTTTATCTCCTCAGTGAAAGCTACAGGGAACAGTCAAAGTATAGATAAGATTAACCCCAATATACTTCTGTCTAAGAAAGACTCAATAACATGGTGTTTACATAGTAAGAGAGAAAAATAGAGAGAAAAAGACTAGTCTTTGGTGTTGTTGAAGGAAGATGTCAGGTGGTGGTTGTAGCATAGTATGGTTTAGAAGGGATCTGAGAGTGGAAGATAACCCTGCTTTGGCTGCTGGAGTTAGAGCAGGGGCAGTTATTGCTGTGTTTATTTATGCTCCTGAAGAAGAAGGGCATTATTATCCTGGTAGAGTTTCAAGATGGTGGCTTAAGCAGAGTTTGGCTCATCTTGATTCATCTTTGAAGAGTCTTGGAACCTCCCTTATTACAAAGAGATCTACTGATAGTATTTCTTCTCTTCTTGAAGTTGTTAAATCTACTGGTGCTACTCAGCTCTTCTTCAATCATTTGTATGGTTAGTACTTGTTTCCATTTTTTTCTGTGGTTTTCTTGCTTCTTTAAATAAAAGATAGAGCACCACTGTTTTACTTC</gDNA_template>
            <first_frame> V  L  M  L  P  H  H  H  N  Q  S  P  S  I  S  L  S  P  P  S  F  S  G  E  V  C  F  F  G  W  T  M  P  I  V  T  S  Q  E  *  H  L  I  I  H  Q  R  I  T  F  G  V  C  *  S  *  V  L  Y  *  N  L  P  K  K  N  H  L  C  N  L  Y  L  L  S  E  S  Y  R  E  Q  S  K  Y  R  *  D  *  P  Q  Y  T  S  V  *  E  R  L  N  N  M  V  F  T  *  *  E  R  K  I  E  R  K  R  L  V  F  G  V  V  E  G  R  C  Q  V  V  V  V  A  *  Y  G  L  E  G  I  *  E  W  K  I  T  L  L  W  L  L  E  L  E  Q  G  Q  L  L  L  C  L  F  M  L  L  K  K  K  G  I  I  I  L  V  E  F  Q  D  G  G  L  S  R  V  W  L  I  L  I  H  L  *  R  V  L  E  P  P  L  L  Q  R  D  L  L  I  V  F  L  L  F  L  K  L  L  N  L  L  V  L  L  S  S  S  S  I  I  C  M  V  S  T  C  F  H  F  F  L  W  F  S  C  F  F  K  *  K  I  E  H  H  C  F  T   </first_frame>
            <second_frame>  F  S  C  Y  P  T  T  I  T  N  H  P  Q  S  H  F  L  L  P  L  S  L  E  R  F  V  F  L  G  G  Q  C  L  *  *  L  H  K  N  S  I  S  S  F  I  K  E  *  H  L  G  F  V  K  V  R  F  F  T  R  I  C  L  K  K  I  I  F  V  I  F  I  S  S  V  K  A  T  G  N  S  Q  S  I  D  K  I  N  P  N  I  L  L  S  K  K  D  S  I  T  W  C  L  H  S  K  R  E  K  *  R  E  K  D  *  S  L  V  L  L  K  E  D  V  R  W  W  L  *  H  S  M  V  *  K  G  S  E  S  G  R  *  P  C  F  G  C  W  S  *  S  R  G  S  Y  C  C  V  Y  L  C  S  *  R  R  R  A  L  L  S  W  *  S  F  K  M  V  A  *  A  E  F  G  S  S  *  F  I  F  E  E  S  W  N  L  P  Y  Y  K  E  I  Y  *  *  Y  F  F  S  S  *  S  C  *  I  Y  W  C  Y  S  A  L  L  Q  S  F  V  W  L  V  L  V  S  I  F  F  C  G  F  L  A  S  L  N  K  R  *  S  T  T  V  L  L  </second_frame>
            <third_frame>   S  H  V  T  P  P  P  *  P  I  T  L  N  L  T  F  S  S  L  F  L  W  R  G  L  F  F  W  V  D  N  A  Y  S  N  F  T  R  I  A  S  H  H  S  S  K  N  N  I  W  G  L  L  K  L  G  S  L  L  E  F  A  *  K  K  S  S  L  *  S  L  S  P  Q  *  K  L  Q  G  T  V  K  V  *  I  R  L  T  P  I  Y  F  C  L  R  K  T  Q  *  H  G  V  Y  I  V  R  E  K  N  R  E  K  K  T  S  L  W  C  C  *  R  K  M  S  G  G  G  C  S  I  V  W  F  R  R  D  L  R  V  E  D  N  P  A  L  A  A  G  V  R  A  G  A  V  I  A  V  F  I  Y  A  P  E  E  E  G  H  Y  Y  P  G  R  V  S  R  W  W  L  K  Q  S  L  A  H  L  D  S  S  L  K  S  L  G  T  S  L  I  T  K  R  S  T  D  S  I  S  S  L  L  E  V  V  K  S  T  G  A  T  Q  L  F  F  N  H  L  Y  G  *  Y  L  F  P  F  F  S  V  V  F  L  L  L  *  I  K  D  R  A  P  L  F  Y  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5680" stop="5357"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKMSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSLAHLDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLYG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="29941" PGL_stop="29479"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29941" e_stop="29479"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.963">
            <gDNA_exon_boundary e_start="29941" e_stop="29479" e_length="463"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29941" stop="29479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E473642" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCTCCTTTTTCTCTCCTTACTCATTATTGTTCAAAAAAAGAGAGATAAAGAGCCTATGTGCTATTGATTTCTTCATCATTAGCAAGAGAAAAAGGAATTGAATTAAACTGAATTTTAGTTTTCTGAGATAATGGCCAGCACCTTTTGCTTTCTTGTTGTAGCAACACTCATTATGTGTATATTCATTGCAAAAACACCTCTAGCAGTGTCACTGAATGTGGAGAGGAAGTTGATATCAGCAACACCAGTAGAGTTTCTTGCAAATCCTCCGGTGCCAGCGGCATCTCCATTCTCAGAGATATCTCCAGATATTGCACCTCTCTTGCCTTCTTCTGGTGGTGTGGTGCCTCCAGTTTCTTCAATGCCAACTATTCCTTCGAATCCTAGTAAAAATCCAGATGATGTGATGTACCCTATTGGCCCTGATACTGCTGCTCTTGGACCTTCTGCTTTTTCACCT</gDNA_template>
            <first_frame> I  S  P  F  S  L  L  T  H  Y  C  S  K  K  E  R  *  R  A  Y  V  L  L  I  S  S  S  L  A  R  E  K  G  I  E  L  N  *  I  L  V  F  *  D  N  G  Q  H  L  L  L  S  C  C  S  N  T  H  Y  V  Y  I  H  C  K  N  T  S  S  S  V  T  E  C  G  E  E  V  D  I  S  N  T  S  R  V  S  C  K  S  S  G  A  S  G  I  S  I  L  R  D  I  S  R  Y  C  T  S  L  A  F  F  W  W  C  G  A  S  S  F  F  N  A  N  Y  S  F  E  S  *  *  K  S  R  *  C  D  V  P  Y  W  P  *  Y  C  C  S  W  T  F  C  F  F  T  </first_frame>
            <second_frame>  S  L  L  F  L  S  L  L  I  I  V  Q  K  K  R  D  K  E  P  M  C  Y  *  F  L  H  H  *  Q  E  K  K  E  L  N  *  T  E  F  *  F  S  E  I  M  A  S  T  F  C  F  L  V  V  A  T  L  I  M  C  I  F  I  A  K  T  P  L  A  V  S  L  N  V  E  R  K  L  I  S  A  T  P  V  E  F  L  A  N  P  P  V  P  A  A  S  P  F  S  E  I  S  P  D  I  A  P  L  L  P  S  S  G  G  V  V  P  P  V  S  S  M  P  T  I  P  S  N  P  S  K  N  P  D  D  V  M  Y  P  I  G  P  D  T  A  A  L  G  P  S  A  F  S  P </second_frame>
            <third_frame>   L  S  F  F  S  P  Y  S  L  L  F  K  K  R  E  I  K  S  L  C  A  I  D  F  F  I  I  S  K  R  K  R  N  *  I  K  L  N  F  S  F  L  R  *  W  P  A  P  F  A  F  L  L  *  Q  H  S  L  C  V  Y  S  L  Q  K  H  L  *  Q  C  H  *  M  W  R  G  S  *  Y  Q  Q  H  Q  *  S  F  L  Q  I  L  R  C  Q  R  H  L  H  S  Q  R  Y  L  Q  I  L  H  L  S  C  L  L  L  V  V  W  C  L  Q  F  L  Q  C  Q  L  F  L  R  I  L  V  K  I  Q  M  M  *  C  T  L  L  A  L  I  L  L  L  L  D  L  L  L  F  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29820" stop="29479"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSEIMASTFCFLVVATLIMCIFIAKTPLAVSLNVERKLISATPVEFLANPPVPAASPFSEISPDIAPLLPSSGGVVPPVSSMPTIPSNPSKNPDDVMYPIGPDTAALGPSAFSP</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29812" stop="29552"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>258</number_coding_nucleotides>
                  <number_encoded_amino_acids>86</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DNGQHLLLSCCSNTHYVYIHCKNTSSSVTECGEEVDISNTSRVSCKSSGASGISILRDISRYCTSLAFFWWCGASSFFNANYSFES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="33923" PGL_stop="32391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33923" e_stop="33317"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="33923" e_stop="33317" e_length="607"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33923" stop="33317"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475357" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGCTTTGAATCTATTCCACGAAATGAGAAGTGTGGGTGTTTCGCCAACAAATATCACATTTATTGGTGTCTTATCTGCCTGTGATCATTGTGGTTTACTAGAAGAGGGAAAAAGGTGGTTTTATTCAATGAATTACGATTACCACATTGATCCAGGAATTGAACATTACTCCTGTATGGTAGATCTTTATGCAAGAGCTGGATGTCTCGAAGAAGCTGTGAACCTCATCAAAAAGATGCCATTTGAGGCAGATTCAAGCATGTGGTTATCCATTTTGAGAGGATGTGTAGCTCATGGTAACAAGATACTAGGACAGCTCGTGGCTCAACGCATTATAGAGCTTGATCCTGAGAATTCAGGTGCTTTCGTGCAGTTATCAAACATATTTGCTACTTCTGAGGACTGGGAAAGATCTGCTTTAGTCAGGAGGCTGATGATAGAAAAGAAAATCCATAAGAGTTCTGGTCGAAGCTGGAGTGATATGTAAGACAAAGTGCAGTACAGGTCTGCGGATGATTATTGCAGCAGTTGGAGAAGAGGTTAATTTTATTTTTAGCCACCCACTTCAATAGCTTTTGAAGCTATTAATTGTTTTTTTTTCCGGC</gDNA_template>
            <first_frame> E  A  L  N  L  F  H  E  M  R  S  V  G  V  S  P  T  N  I  T  F  I  G  V  L  S  A  C  D  H  C  G  L  L  E  E  G  K  R  W  F  Y  S  M  N  Y  D  Y  H  I  D  P  G  I  E  H  Y  S  C  M  V  D  L  Y  A  R  A  G  C  L  E  E  A  V  N  L  I  K  K  M  P  F  E  A  D  S  S  M  W  L  S  I  L  R  G  C  V  A  H  G  N  K  I  L  G  Q  L  V  A  Q  R  I  I  E  L  D  P  E  N  S  G  A  F  V  Q  L  S  N  I  F  A  T  S  E  D  W  E  R  S  A  L  V  R  R  L  M  I  E  K  K  I  H  K  S  S  G  R  S  W  S  D  M  *  D  K  V  Q  Y  R  S  A  D  D  Y  C  S  S  W  R  R  G  *  F  Y  F  *  P  P  T  S  I  A  F  E  A  I  N  C  F  F  F  R  </first_frame>
            <second_frame>  K  L  *  I  Y  S  T  K  *  E  V  W  V  F  R  Q  Q  I  S  H  L  L  V  S  Y  L  P  V  I  I  V  V  Y  *  K  R  E  K  G  G  F  I  Q  *  I  T  I  T  T  L  I  Q  E  L  N  I  T  P  V  W  *  I  F  M  Q  E  L  D  V  S  K  K  L  *  T  S  S  K  R  C  H  L  R  Q  I  Q  A  C  G  Y  P  F  *  E  D  V  *  L  M  V  T  R  Y  *  D  S  S  W  L  N  A  L  *  S  L  I  L  R  I  Q  V  L  S  C  S  Y  Q  T  Y  L  L  L  L  R  T  G  K  D  L  L  *  S  G  G  *  *  *  K  R  K  S  I  R  V  L  V  E  A  G  V  I  C  K  T  K  C  S  T  G  L  R  M  I  I  A  A  V  G  E  E  V  N  F  I  F  S  H  P  L  Q  *  L  L  K  L  L  I  V  F  F  S  G </second_frame>
            <third_frame>   S  F  E  S  I  P  R  N  E  K  C  G  C  F  A  N  K  Y  H  I  Y  W  C  L  I  C  L  *  S  L  W  F  T  R  R  G  K  K  V  V  L  F  N  E  L  R  L  P  H  *  S  R  N  *  T  L  L  L  Y  G  R  S  L  C  K  S  W  M  S  R  R  S  C  E  P  H  Q  K  D  A  I  *  G  R  F  K  H  V  V  I  H  F  E  R  M  C  S  S  W  *  Q  D  T  R  T  A  R  G  S  T  H  Y  R  A  *  S  *  E  F  R  C  F  R  A  V  I  K  H  I  C  Y  F  *  G  L  G  K  I  C  F  S  Q  E  A  D  D  R  K  E  N  P  *  E  F  W  S  K  L  E  *  Y  V  R  Q  S  A  V  Q  V  C  G  *  L  L  Q  Q  L  E  K  R  L  I  L  F  L  A  T  H  F  N  S  F  *  S  Y  *  L  F  F  F  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33923" stop="33435"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EALNLFHEMRSVGVSPTNITFIGVLSACDHCGLLEEGKRWFYSMNYDYHIDPGIEHYSCMVDLYARAGCLEEAVNLIKKMPFEADSSMWLSILRGCVAHGNKILGQLVAQRIIELDPENSGAFVQLSNIFATSEDWERSALVRRLMIEKKIHKSSGRSWSDM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33865" e_stop="33383"/>
            <exon e_start="32642" e_stop="32391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="1.000" e_score="0.952"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="33865" e_stop="33383" e_length="483"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="1.000">
            <gDNA_intron_boundary i_start="33382" i_stop="32643" i_length="740"/>
          </intron>
          <exon e_serial="2" e_score="0.929">
            <gDNA_exon_boundary e_start="32642" e_stop="32391" e_length="252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33865" stop="33383"/>
              <exon start="32642" stop="32391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E604306" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATTTATTGGTGTCTTATCTGCCTGTGATCATTGTGGTTTACTAGAAGAGGGAAAAAGGTGGTTTTATTCAATGAATTACGATTACCACATTGATCCAGGAATTGAACATTACTCCTGTATGGTAGATCTTTATGCAAGAGCTGGATGTCTCGAAGAAGCTGTGAACCTCATCAAAAAGATGCCATTTGAGGCAGATTCAAGCATGTGGTTATCCATTTTGAGAGGATGTGTAGCTCATGGTAACAAGATACTAGGACAGCTCGTGGCTCAACGCATTATAGAGCTTGATCCTGAGAATTCAGGTGCTTTCGTGCAGTTATCAAACATATTTGCTACTTCTGAGGACTGGGAAAGATCTGCTTTAGTCAGGAGGCTGATGATAGAAAAGAAAATCCATAAGAGTTCTGGTCGAAGCTGGAGTGATATGTAAGACAAAGTGCAGTACAGGTCTGCGGATGATTATTGCAGCAGTTGGAGAAGAG : GTTGGTATAGTGATGTTGTTCATGGGGATGAGGGGGTCTGGTCTGCCTCCTATAGTAGCGATAACTCAAGTAATTATTCTTCCTACGCCCTTCAAAGGATGCTCACACTCAAGGGATCTTTGAAGCATGTTCTGTCATGGCTGAAAACGTGAATGAATCAGGTATTTGTGCCGTGGCCGACCTCAGAGAGAACTATTACCTGGCTGGAAATATTTTTTCTGGGAGAATGAAGGGGGTTTCCCCTTAGGATTG</gDNA_template>
            <first_frame> H  L  L  V  S  Y  L  P  V  I  I  V  V  Y  *  K  R  E  K  G  G  F  I  Q  *  I  T  I  T  T  L  I  Q  E  L  N  I  T  P  V  W  *  I  F  M  Q  E  L  D  V  S  K  K  L  *  T  S  S  K  R  C  H  L  R  Q  I  Q  A  C  G  Y  P  F  *  E  D  V  *  L  M  V  T  R  Y  *  D  S  S  W  L  N  A  L  *  S  L  I  L  R  I  Q  V  L  S  C  S  Y  Q  T  Y  L  L  L  L  R  T  G  K  D  L  L  *  S  G  G  *  *  *  K  R  K  S  I  R  V  L  V  E  A  G  V  I  C  K  T  K  C  S  T  G  L  R  M  I  I  A  A  V  G  E  E  :  V  G  I  V  M  L  F  M  G  M  R  G  S  G  L  P  P  I  V  A  I  T  Q  V  I  I  L  P  T  P  F  K  G  C  S  H  S  R  D  L  *  S  M  F  C  H  G  *  K  R  E  *  I  R  Y  L  C  R  G  R  P  Q  R  E  L  L  P  G  W  K  Y  F  F  W  E  N  E  G  G  F  P  L  G  L </first_frame>
            <second_frame>  I  Y  W  C  L  I  C  L  *  S  L  W  F  T  R  R  G  K  K  V  V  L  F  N  E  L  R  L  P  H  *  S  R  N  *  T  L  L  L  Y  G  R  S  L  C  K  S  W  M  S  R  R  S  C  E  P  H  Q  K  D  A  I  *  G  R  F  K  H  V  V  I  H  F  E  R  M  C  S  S  W  *  Q  D  T  R  T  A  R  G  S  T  H  Y  R  A  *  S  *  E  F  R  C  F  R  A  V  I  K  H  I  C  Y  F  *  G  L  G  K  I  C  F  S  Q  E  A  D  D  R  K  E  N  P  *  E  F  W  S  K  L  E  *  Y  V  R  Q  S  A  V  Q  V  C  G  *  L  L  Q  Q  L  E  K  R :   L  V  *  *  C  C  S  W  G  *  G  G  L  V  C  L  L  *  *  R  *  L  K  *  L  F  F  L  R  P  S  K  D  A  H  T  Q  G  I  F  E  A  C  S  V  M  A  E  N  V  N  E  S  G  I  C  A  V  A  D  L  R  E  N  Y  Y  L  A  G  N  I  F  S  G  R  M  K  G  V  S  P  *  D   </second_frame>
            <third_frame>   F  I  G  V  L  S  A  C  D  H  C  G  L  L  E  E  G  K  R  W  F  Y  S  M  N  Y  D  Y  H  I  D  P  G  I  E  H  Y  S  C  M  V  D  L  Y  A  R  A  G  C  L  E  E  A  V  N  L  I  K  K  M  P  F  E  A  D  S  S  M  W  L  S  I  L  R  G  C  V  A  H  G  N  K  I  L  G  Q  L  V  A  Q  R  I  I  E  L  D  P  E  N  S  G  A  F  V  Q  L  S  N  I  F  A  T  S  E  D  W  E  R  S  A  L  V  R  R  L  M  I  E  K  K  I  H  K  S  S  G  R  S  W  S  D  M  *  D  K  V  Q  Y  R  S  A  D  D  Y  C  S  S  W  R  R   : G  W  Y  S  D  V  V  H  G  D  E  G  V  W  S  A  S  Y  S  S  D  N  S  S  N  Y  S  S  Y  A  L  Q  R  M  L  T  L  K  G  S  L  K  H  V  L  S  W  L  K  T  *  M  N  Q  V  F  V  P  W  P  T  S  E  R  T  I  T  W  L  E  I  F  F  L  G  E  *  R  G  F  P  L  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33863" stop="33435"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIGVLSACDHCGLLEEGKRWFYSMNYDYHIDPGIEHYSCMVDLYARAGCLEEAVNLIKKMPFEADSSMWLSILRGCVAHGNKILGQLVAQRIIELDPENSGAFVQLSNIFATSEDWERSALVRRLMIEKKIHKSSGRSWSDM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33434" stop="33383"/>
                    <exon start="32642" stop="32491"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DKVQYRSADDYCSSWRRGWYSDVVHGDEGVWSASYSSDNSSNYSSYALQRMLTLKGSLKHVLSWLKT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="36814" PGL_stop="37658"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36814" e_stop="36928"/>
            <exon e_start="37041" e_stop="37658"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.995" e_score="0.922"/>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="36814" e_stop="36928" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.995">
            <gDNA_intron_boundary i_start="36929" i_stop="37040" i_length="112"/>
          </intron>
          <exon e_serial="2" e_score="0.931">
            <gDNA_exon_boundary e_start="37041" e_stop="37658" e_length="618"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36814" stop="36928"/>
              <exon start="37041" stop="37581"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36819" stop="36928"/>
              <exon start="37041" stop="37556"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E606414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36822" stop="36928"/>
              <exon start="37041" stop="37636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E477955" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36827" stop="36928"/>
              <exon start="37041" stop="37270"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E615747" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36833" stop="36928"/>
              <exon start="37041" stop="37432"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36847" stop="36928"/>
              <exon start="37041" stop="37537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36848" stop="36928"/>
              <exon start="37041" stop="37519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36848" stop="36928"/>
              <exon start="37041" stop="37519"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688776" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36849" stop="36928"/>
              <exon start="37041" stop="37583"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257165" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36869" stop="36928"/>
              <exon start="37041" stop="37419"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37123" stop="37658"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37417" stop="37571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E616375" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTAGAGCAGCTCGAGAAGTAAGAGAGAGGACTGAAAATACAATTTCTCCGGCGCCGTCTAAGGCCTATAAAATCGGAAGTTCATCGCATTAGCAAATTCATCCCAACTTCAAA : ATGAGGTTGTTAACTCACAACATGTTATCATCCAACATCAAGGGAGTCGCAAATGGATTCCCGTTGAAGATCGAGGTTGTGAAAGTGGTAGAGAAAGAGGTTGATTTTAATATCGATTTTCTCAAGAACATGTTCCATAAGGTTGAATGGAAGGCACTGGCGGAAGCTTCTAGAACCATGGGTTACGCTGAACTGCCTGAAAATGTTGATGCTGCTATGGTAAACTCAGATGATTTTCTTCATAAGTTTCATCATGCCCTTCTCGAGCTTCATCTTGAAGAGGGTGCCTTGGTTTGTCCAGAGACTGGCCGGAAATTTCCTGTCAATAAAGGCATTCCCAATATGCTTCTTCATGAAGACGAGGTCTGATTAGTTTTTTTTTTCTTTTTTTGGGTATTGATATGTTTTGGTTTGGAAATGGGGATTAGGGTTCTTGATTATAGGGTTTAAGGGGTTTGTTATGATATACCATTTTGAATTGTAATGCTATTATTGGAAGACACTGTCGATATTATGGAGTAATTACCAGAACTTCTTTGTTGCACCACACTGCTATATCTGAGATTGTAGTTTTGTATCGAAATTACAACCTTCAAACTTCTGTTTTGAAGTTTATAA</gDNA_template>
            <first_frame> H  *  S  S  S  R  S  K  R  E  D  *  K  Y  N  F  S  G  A  V  *  G  L  *  N  R  K  F  I  A  L  A  N  S  S  Q  L  Q   : N  E  V  V  N  S  Q  H  V  I  I  Q  H  Q  G  S  R  K  W  I  P  V  E  D  R  G  C  E  S  G  R  E  R  G  *  F  *  Y  R  F  S  Q  E  H  V  P  *  G  *  M  E  G  T  G  G  S  F  *  N  H  G  L  R  *  T  A  *  K  C  *  C  C  Y  G  K  L  R  *  F  S  S  *  V  S  S  C  P  S  R  A  S  S  *  R  G  C  L  G  L  S  R  D  W  P  E  I  S  C  Q  *  R  H  S  Q  Y  A  S  S  *  R  R  G  L  I  S  F  F  F  L  F  L  G  I  D  M  F  W  F  G  N  G  D  *  G  S  *  L  *  G  L  R  G  L  L  *  Y  T  I  L  N  C  N  A  I  I  G  R  H  C  R  Y  Y  G  V  I  T  R  T  S  L  L  H  H  T  A  I  S  E  I  V  V  L  Y  R  N  Y  N  L  Q  T  S  V  L  K  F  I  </first_frame>
            <second_frame>  I  R  A  A  R  E  V  R  E  R  T  E  N  T  I  S  P  A  P  S  K  A  Y  K  I  G  S  S  S  H  *  Q  I  H  P  N  F  K  :  M  R  L  L  T  H  N  M  L  S  S  N  I  K  G  V  A  N  G  F  P  L  K  I  E  V  V  K  V  V  E  K  E  V  D  F  N  I  D  F  L  K  N  M  F  H  K  V  E  W  K  A  L  A  E  A  S  R  T  M  G  Y  A  E  L  P  E  N  V  D  A  A  M  V  N  S  D  D  F  L  H  K  F  H  H  A  L  L  E  L  H  L  E  E  G  A  L  V  C  P  E  T  G  R  K  F  P  V  N  K  G  I  P  N  M  L  L  H  E  D  E  V  *  L  V  F  F  F  F  F  W  V  L  I  C  F  G  L  E  M  G  I  R  V  L  D  Y  R  V  *  G  V  C  Y  D  I  P  F  *  I  V  M  L  L  L  E  D  T  V  D  I  M  E  *  L  P  E  L  L  C  C  T  T  L  L  Y  L  R  L  *  F  C  I  E  I  T  T  F  K  L  L  F  *  S  L  * </second_frame>
            <third_frame>   L  E  Q  L  E  K  *  E  R  G  L  K  I  Q  F  L  R  R  R  L  R  P  I  K  S  E  V  H  R  I  S  K  F  I  P  T  S  K :   *  G  C  *  L  T  T  C  Y  H  P  T  S  R  E  S  Q  M  D  S  R  *  R  S  R  L  *  K  W  *  R  K  R  L  I  L  I  S  I  F  S  R  T  C  S  I  R  L  N  G  R  H  W  R  K  L  L  E  P  W  V  T  L  N  C  L  K  M  L  M  L  L  W  *  T  Q  M  I  F  F  I  S  F  I  M  P  F  S  S  F  I  L  K  R  V  P  W  F  V  Q  R  L  A  G  N  F  L  S  I  K  A  F  P  I  C  F  F  M  K  T  R  S  D  *  F  F  F  S  F  F  G  Y  *  Y  V  L  V  W  K  W  G  L  G  F  L  I  I  G  F  K  G  F  V  M  I  Y  H  F  E  L  *  C  Y  Y  W  K  T  L  S  I  L  W  S  N  Y  Q  N  F  F  V  A  P  H  C  Y  I  *  D  C  S  F  V  S  K  L  Q  P  S  N  F  C  F  E  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36908" stop="36928"/>
                    <exon start="37041" stop="37409"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QIHPNFKMRLLTHNMLSSNIKGVANGFPLKIEVVKVVEKEVDFNIDFLKNMFHKVEWKALAEASRTMGYAELPENVDAAMVNSDDFLHKFHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="43641" PGL_stop="38045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43641" e_stop="43271"/>
            <exon e_start="43183" e_stop="43043"/>
            <exon e_start="42723" e_stop="42499"/>
            <exon e_start="40699" e_stop="40492"/>
            <exon e_start="39307" e_stop="39171"/>
            <exon e_start="38896" e_stop="38816"/>
            <exon e_start="38636" e_stop="38570"/>
            <exon e_start="38489" e_stop="38045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.921" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.906" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.527" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43641" e_stop="43271" e_length="371"/>
          </exon>
          <intron i_serial="1" don_prob="0.921" acc_prob="0.992">
            <gDNA_intron_boundary i_start="43270" i_stop="43184" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="43183" e_stop="43043" e_length="141"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.893">
            <gDNA_intron_boundary i_start="43042" i_stop="42724" i_length="319"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42723" e_stop="42499" e_length="225"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.968">
            <gDNA_intron_boundary i_start="42498" i_stop="40700" i_length="1799"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="40699" e_stop="40492" e_length="208"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.906">
            <gDNA_intron_boundary i_start="40491" i_stop="39308" i_length="1184"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="39307" e_stop="39171" e_length="137"/>
          </exon>
          <intron i_serial="5" don_prob="0.987" acc_prob="0.527">
            <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38896" e_stop="38816" e_length="81"/>
          </exon>
          <intron i_serial="6" don_prob="0.983" acc_prob="0.932">
            <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38636" e_stop="38570" e_length="67"/>
          </exon>
          <intron i_serial="7" don_prob="0.934" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38569" i_stop="38490" i_length="80"/>
          </intron>
          <exon e_serial="8" e_score="0.993">
            <gDNA_exon_boundary e_start="38489" e_stop="38045" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43641" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43636" stop="43271"/>
              <exon start="43183" stop="43120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43635" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43635" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43630" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42617"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301804" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43610" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42499"/>
              <exon start="40699" stop="40566"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721993" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43610" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42499"/>
              <exon start="40699" stop="40644"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721907" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43601" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42499"/>
              <exon start="40699" stop="40559"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E703912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43600" stop="43271"/>
              <exon start="43183" stop="43043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43598" stop="43271"/>
              <exon start="43183" stop="43074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43481" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42499"/>
              <exon start="40699" stop="40661"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E451902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43473" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43341" stop="43271"/>
              <exon start="43183" stop="43043"/>
              <exon start="42723" stop="42499"/>
              <exon start="40699" stop="40492"/>
              <exon start="39307" stop="39171"/>
              <exon start="38896" stop="38816"/>
              <exon start="38636" stop="38616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43102" stop="43043"/>
              <exon start="42723" stop="42499"/>
              <exon start="40699" stop="40492"/>
              <exon start="39307" stop="39248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39301" stop="39171"/>
              <exon start="38896" stop="38816"/>
              <exon start="38636" stop="38570"/>
              <exon start="38489" stop="38045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39295" stop="39171"/>
              <exon start="38896" stop="38816"/>
              <exon start="38636" stop="38570"/>
              <exon start="38489" stop="38132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATACTTCCACTTGCCCTTCGATAATCTCAGAGTTTCATCCGGAAACGCTTTCCATTCCAACCGCCGCTATGCCGCTGTCCGGCGACGGAGCTGATGTCTCTGCCGGTGGACGATGTACGTGCTCTTCCCTCGATGAGGAAAGCCTAATCCAGAACTGCCAGCATTGCCGGCGATCGACTCTCCCTTCCTCTTCGTCATCTTGCTCTTTGCTTAGCCTCGAATCTTATCCGGTTCAGGATTACGACAAGCTTTGGAGAATATTTAGTGCTTCCGTTAAAGGATTCACTATTGGCGCTGGTCTAAAAGGTGGCCTCGCTATCTTTGCTGTTCTCTCTCGGCTACGACGTAGGAAATCGATGTCCTCTGCGAA : GAAAGGGCAAATGGTCTCGAGCAGGGATGATGTAGTTTTGGCACTAAAGGAAACTCTAAGATATGGTCTGTTCCTTGGCACTTTCTCTGGTACATTTGTATCAGTTGATGAAATTGTGTCCGCTTGGGGAGGTCATCGAAG : GACAGCTAAGTGGAGAGCATTGCTAGCGGGTGCAATTGCAGGGCCATCGTTGCTTCTTACTGGTAATACACAGCACACGAGCTTGGCGGTTTACATTCTTGTGCGTGCGGCTGTGTTGGCATCCCGTTGTGGAATAAAAAGTAAGCGGTTTGGGCGCATATGCAAGCCTTTAACTTGGGCTCATGGAGACATTTTCCTTATGTGTCTATCCTCTTCACAGATCCT : GTCAGCTTACATATTGAAGCAAGATAGTCTGCATCCATCTTACAAATCCTTTCTCAACAAACATGGTGGCAAAGCTTTGGTTATCCTGCAGGGTGTGAAAGACCTGGCATGTGGGAACTCTGTAATGAATTTGGAAGCAATAGAGAATCACTACAAGTCCAATGGTATTAACATCAAACTGGATCCACAAATGAAAGTACCCTGCTCG : ATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG : ACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTG : GTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACG : TTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAAATAATTTAACTTTGTACACCACAATAGTCATAGAACTAATCTACCTTCATGCAAATGTAGAATGATTTATGGTCTGTTTAGTTGGAA</gDNA_template>
            <first_frame> Y  T  S  T  C  P  S  I  I  S  E  F  H  P  E  T  L  S  I  P  T  A  A  M  P  L  S  G  D  G  A  D  V  S  A  G  G  R  C  T  C  S  S  L  D  E  E  S  L  I  Q  N  C  Q  H  C  R  R  S  T  L  P  S  S  S  S  S  C  S  L  L  S  L  E  S  Y  P  V  Q  D  Y  D  K  L  W  R  I  F  S  A  S  V  K  G  F  T  I  G  A  G  L  K  G  G  L  A  I  F  A  V  L  S  R  L  R  R  R  K  S  M  S  S  A  K :   K  G  Q  M  V  S  S  R  D  D  V  V  L  A  L  K  E  T  L  R  Y  G  L  F  L  G  T  F  S  G  T  F  V  S  V  D  E  I  V  S  A  W  G  G  H  R  R :   T  A  K  W  R  A  L  L  A  G  A  I  A  G  P  S  L  L  L  T  G  N  T  Q  H  T  S  L  A  V  Y  I  L  V  R  A  A  V  L  A  S  R  C  G  I  K  S  K  R  F  G  R  I  C  K  P  L  T  W  A  H  G  D  I  F  L  M  C  L  S  S  S  Q  I  L :   S  A  Y  I  L  K  Q  D  S  L  H  P  S  Y  K  S  F  L  N  K  H  G  G  K  A  L  V  I  L  Q  G  V  K  D  L  A  C  G  N  S  V  M  N  L  E  A  I  E  N  H  Y  K  S  N  G  I  N  I  K  L  D  P  Q  M  K  V  P  C  S  :  I  V  H  E  N  Q  G  C  G  A  H  F  I  S  F  L  I  Q  A  Y  K  R  A  L  P  V  Y  L  P  V  Y  L  V  P  A  L  I  V  H  R  Q  G  I  L  K  R :   P  N  T  I  L  A  K  G  L  L  G  T  A  R  S  S  L  F  L  S  M  Y  C  S  S  A  W :   L  W  T  C  F  L  F  R  L  F  K  R  C  N  I  P  M  V  A  L  G  T  :  F  P  T  G  L  A  L  A  I  E  K  K  S  R  R  I  E  I  S  L  Y  C  L  A  R  A  L  E  S  F  V  T  C  M  A  D  V  G  Y  L  P  Q  S  E  K  L  K  R  G  D  V  V  I  F  S  M  A  T  A  I  I  M  H  C  Y  A  M  E  R  D  V  F  K  S  K  Y  L  N  V  L  D  W  V  F  G  V  P  L  P  P  Y  D  T  T  P  R  K  K  W  R  S  S  S  I  *  R  T  A  R  Y  N  C  T  Q  C  M  S  Q  K  N  N  L  T  L  Y  T  T  I  V  I  E  L  I  Y  L  H  A  N  V  E  *  F  M  V  C  L  V  G  </first_frame>
            <second_frame>  I  L  P  L  A  L  R  *  S  Q  S  F  I  R  K  R  F  P  F  Q  P  P  L  C  R  C  P  A  T  E  L  M  S  L  P  V  D  D  V  R  A  L  P  S  M  R  K  A  *  S  R  T  A  S  I  A  G  D  R  L  S  L  P  L  R  H  L  A  L  C  L  A  S  N  L  I  R  F  R  I  T  T  S  F  G  E  Y  L  V  L  P  L  K  D  S  L  L  A  L  V  *  K  V  A  S  L  S  L  L  F  S  L  G  Y  D  V  G  N  R  C  P  L  R   : R  K  G  K  W  S  R  A  G  M  M  *  F  W  H  *  R  K  L  *  D  M  V  C  S  L  A  L  S  L  V  H  L  Y  Q  L  M  K  L  C  P  L  G  E  V  I  E   : G  Q  L  S  G  E  H  C  *  R  V  Q  L  Q  G  H  R  C  F  L  L  V  I  H  S  T  R  A  W  R  F  T  F  L  C  V  R  L  C  W  H  P  V  V  E  *  K  V  S  G  L  G  A  Y  A  S  L  *  L  G  L  M  E  T  F  S  L  C  V  Y  P  L  H  R  S   : C  Q  L  T  Y  *  S  K  I  V  C  I  H  L  T  N  P  F  S  T  N  M  V  A  K  L  W  L  S  C  R  V  *  K  T  W  H  V  G  T  L  *  *  I  W  K  Q  *  R  I  T  T  S  P  M  V  L  T  S  N  W  I  H  K  *  K  Y  P  A  R :   *  Y  M  R  I  K  D  V  V  R  I  S  F  H  F  *  F  K  P  T  R  E  L  C  R  F  T  F  Q  F  I  *  F  L  H  S  L  Y  I  V  K  A  S  *  K   : D  L  T  Q  F  W  R  R  V  S  S  V  Q  Q  G  L  V  Y  F  S  P  C  I  V  R  L  P   : G  C  G  H  V  F  S  S  G  C  S  R  G  V  T  S  P  W  W  H  W  E  R :   S  L  L  V  W  P  W  Q  S  R  R  K  A  E  G  *  R  F  H  S  I  V  L  L  G  H  L  R  V  S  S  R  A  W  L  M  L  V  I  C  L  S  L  K  N  *  R  G  V  M  L  *  S  L  A  W  Q  L  Q  L  S  C  I  V  M  L  W  R  G  M  S  L  N  P  S  I  *  M  F  L  I  G  C  L  V  C  L  F  P  P  M  I  P  L  L  A  R  N  G  V  P  H  P  Y  K  E  P  R  D  I  I  V  H  N  A  C  R  K  K  I  I  *  L  C  T  P  Q  *  S  *  N  *  S  T  F  M  Q  M  *  N  D  L  W  S  V  *  L  E </second_frame>
            <third_frame>   Y  F  H  L  P  F  D  N  L  R  V  S  S  G  N  A  F  H  S  N  R  R  Y  A  A  V  R  R  R  S  *  C  L  C  R  W  T  M  Y  V  L  F  P  R  *  G  K  P  N  P  E  L  P  A  L  P  A  I  D  S  P  F  L  F  V  I  L  L  F  A  *  P  R  I  L  S  G  S  G  L  R  Q  A  L  E  N  I  *  C  F  R  *  R  I  H  Y  W  R  W  S  K  R  W  P  R  Y  L  C  C  S  L  S  A  T  T  *  E  I  D  V  L  C  E  :  E  R  A  N  G  L  E  Q  G  *  C  S  F  G  T  K  G  N  S  K  I  W  S  V  P  W  H  F  L  W  Y  I  C  I  S  *  *  N  C  V  R  L  G  R  S  S  K  :  D  S  *  V  E  S  I  A  S  G  C  N  C  R  A  I  V  A  S  Y  W  *  Y  T  A  H  E  L  G  G  L  H  S  C  A  C  G  C  V  G  I  P  L  W  N  K  K  *  A  V  W  A  H  M  Q  A  F  N  L  G  S  W  R  H  F  P  Y  V  S  I  L  F  T  D  P  :  V  S  L  H  I  E  A  R  *  S  A  S  I  L  Q  I  L  S  Q  Q  T  W  W  Q  S  F  G  Y  P  A  G  C  E  R  P  G  M  W  E  L  C  N  E  F  G  S  N  R  E  S  L  Q  V  Q  W  Y  *  H  Q  T  G  S  T  N  E  S  T  L  L   : D  S  T  *  E  S  R  M  W  C  A  F  H  F  I  S  N  S  S  L  Q  E  S  S  A  G  L  P  S  S  L  F  S  S  C  T  H  C  T  S  S  R  H  L  E  K  :  T  *  H  N  F  G  E  G  S  P  R  Y  S  K  V  *  S  I  S  L  H  V  L  F  V  C  L  :  V  V  D  M  F  S  L  Q  A  V  Q  E  V  *  H  P  H  G  G  T  G  N   : V  P  Y  W  S  G  P  G  N  R  E  E  K  Q  K  D  R  D  F  T  L  L  S  C  S  G  T  *  E  F  R  H  V  H  G  *  C  W  L  F  A  S  V  *  K  I  K  E  G  *  C  C  D  L  *  H  G  N  C  N  Y  H  A  L  L  C  Y  G  E  G  C  L  *  I  Q  V  F  E  C  S  *  L  G  V  W  C  A  S  S  P  L  *  Y  H  S  S  Q  E  M  A  F  L  I  H  I  K  N  R  E  I  *  L  Y  T  M  H  V  A  K  K  *  F  N  F  V  H  H  N  S  H  R  T  N  L  P  S  C  K  C  R  M  I  Y  G  L  F  S  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43641" stop="43271"/>
                    <exon start="43183" stop="43043"/>
                    <exon start="42723" stop="42499"/>
                    <exon start="40699" stop="40492"/>
                    <exon start="39307" stop="39171"/>
                    <exon start="38896" stop="38816"/>
                    <exon start="38636" stop="38570"/>
                    <exon start="38489" stop="38175"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1542</number_coding_nucleotides>
                  <number_encoded_amino_acids>514</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YTSTCPSIISEFHPETLSIPTAAMPLSGDGADVSAGGRCTCSSLDEESLIQNCQHCRRSTLPSSSSSCSLLSLESYPVQDYDKLWRIFSASVKGFTIGAGLKGGLAIFAVLSRLRRRKSMSSAKKGQMVSSRDDVVLALKETLRYGLFLGTFSGTFVSVDEIVSAWGGHRRTAKWRALLAGAIAGPSLLLTGNTQHTSLAVYILVRAAVLASRCGIKSKRFGRICKPLTWAHGDIFLMCLSSSQILSAYILKQDSLHPSYKSFLNKHGGKALVILQGVKDLACGNSVMNLEAIENHYKSNGINIKLDPQMKVPCSIVHENQGCGAHFISFLIQAYKRALPVYLPVYLVPALIVHRQGILKRPNTILAKGLLGTARSSLFLSMYCSSAWLWTCFLFRLFKRCNIPMVALGTFPTGLALAIEKKSRRIEISLYCLARALESFVTCMADVGYLPQSEKLKRGDVVIFSMATAIIMHCYAMERDVFKSKYLNVLDWVFGVPLPPYDTTPRKKWRSSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39309" e_stop="39171"/>
            <exon e_start="38896" e_stop="38816"/>
            <exon e_start="38636" e_stop="38570"/>
            <exon e_start="38489" e_stop="38045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.527" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39309" e_stop="39171" e_length="139"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.527">
            <gDNA_intron_boundary i_start="39170" i_stop="38897" i_length="274"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38896" e_stop="38816" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.932">
            <gDNA_intron_boundary i_start="38815" i_stop="38637" i_length="179"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38636" e_stop="38570" e_length="67"/>
          </exon>
          <intron i_serial="3" don_prob="0.934" acc_prob="0.981">
            <gDNA_intron_boundary i_start="38569" i_stop="38490" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="38489" e_stop="38045" e_length="445"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39309" stop="39171"/>
              <exon start="38896" stop="38816"/>
              <exon start="38636" stop="38570"/>
              <exon start="38489" stop="38169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E619826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39301" stop="39171"/>
              <exon start="38896" stop="38816"/>
              <exon start="38636" stop="38570"/>
              <exon start="38489" stop="38045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39295" stop="39171"/>
              <exon start="38896" stop="38816"/>
              <exon start="38636" stop="38570"/>
              <exon start="38489" stop="38132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362636" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATAGTACATGAGAATCAAGGATGTGGTGCGCATTTCATTTCATTTCTAATTCAAGCCTACAAGAGAGCTCTGCCGGTTTACCTTCCAGTTTATTTAGTTCCTGCACTCATTGTACATCGTCAAGGCATCTTGAAAAG : ACCTAACACAATTTTGGCGAAGGGTCTCCTCGGTACAGCAAGGTCTAGTCTATTTCTCTCCATGTATTGTTCGTCTGCCTG : GTTGTGGACATGTTTTCTCTTCAGGCTGTTCAAGAGGTGTAACATCCCCATGGTGGCACTGGGAACG : TTCCCTACTGGTCTGGCCCTGGCAATCGAGAAGAAAAGCAGAAGGATAGAGATTTCACTCTATTGTCTTGCTCGGGCACTTGAGAGTTTCGTCACGTGCATGGCTGATGTTGGTTATTTGCCTCAGTCTGAAAAATTAAAGAGGGGTGATGTTGTGATCTTTAGCATGGCAACTGCAATTATCATGCATTGTTATGCTATGGAGAGGGATGTCTTTAAATCCAAGTATTTGAATGTTCTTGATTGGGTGTTTGGTGTGCCTCTTCCCCCCTATGATACCACTCCTCGCAAGAAATGGCGTTCCTCATCCATATAAAGAACCGCGAGATATAATTGTACACAATGCATGTCGCAAAAAAATAATTTAACTTTGTACACCACAATAGTCATAGAACTAATCTACCTTCATGCAAATGTAGAATGATTTATGGTCTGTTTAGTTGGAA</gDNA_template>
            <first_frame> R  *  Y  M  R  I  K  D  V  V  R  I  S  F  H  F  *  F  K  P  T  R  E  L  C  R  F  T  F  Q  F  I  *  F  L  H  S  L  Y  I  V  K  A  S  *  K   : D  L  T  Q  F  W  R  R  V  S  S  V  Q  Q  G  L  V  Y  F  S  P  C  I  V  R  L  P   : G  C  G  H  V  F  S  S  G  C  S  R  G  V  T  S  P  W  W  H  W  E  R :   S  L  L  V  W  P  W  Q  S  R  R  K  A  E  G  *  R  F  H  S  I  V  L  L  G  H  L  R  V  S  S  R  A  W  L  M  L  V  I  C  L  S  L  K  N  *  R  G  V  M  L  *  S  L  A  W  Q  L  Q  L  S  C  I  V  M  L  W  R  G  M  S  L  N  P  S  I  *  M  F  L  I  G  C  L  V  C  L  F  P  P  M  I  P  L  L  A  R  N  G  V  P  H  P  Y  K  E  P  R  D  I  I  V  H  N  A  C  R  K  K  I  I  *  L  C  T  P  Q  *  S  *  N  *  S  T  F  M  Q  M  *  N  D  L  W  S  V  *  L  E </first_frame>
            <second_frame>  D  S  T  *  E  S  R  M  W  C  A  F  H  F  I  S  N  S  S  L  Q  E  S  S  A  G  L  P  S  S  L  F  S  S  C  T  H  C  T  S  S  R  H  L  E  K  :  T  *  H  N  F  G  E  G  S  P  R  Y  S  K  V  *  S  I  S  L  H  V  L  F  V  C  L  :  V  V  D  M  F  S  L  Q  A  V  Q  E  V  *  H  P  H  G  G  T  G  N   : V  P  Y  W  S  G  P  G  N  R  E  E  K  Q  K  D  R  D  F  T  L  L  S  C  S  G  T  *  E  F  R  H  V  H  G  *  C  W  L  F  A  S  V  *  K  I  K  E  G  *  C  C  D  L  *  H  G  N  C  N  Y  H  A  L  L  C  Y  G  E  G  C  L  *  I  Q  V  F  E  C  S  *  L  G  V  W  C  A  S  S  P  L  *  Y  H  S  S  Q  E  M  A  F  L  I  H  I  K  N  R  E  I  *  L  Y  T  M  H  V  A  K  K  *  F  N  F  V  H  H  N  S  H  R  T  N  L  P  S  C  K  C  R  M  I  Y  G  L  F  S  W   </second_frame>
            <third_frame>   I  V  H  E  N  Q  G  C  G  A  H  F  I  S  F  L  I  Q  A  Y  K  R  A  L  P  V  Y  L  P  V  Y  L  V  P  A  L  I  V  H  R  Q  G  I  L  K  R :   P  N  T  I  L  A  K  G  L  L  G  T  A  R  S  S  L  F  L  S  M  Y  C  S  S  A  W :   L  W  T  C  F  L  F  R  L  F  K  R  C  N  I  P  M  V  A  L  G  T  :  F  P  T  G  L  A  L  A  I  E  K  K  S  R  R  I  E  I  S  L  Y  C  L  A  R  A  L  E  S  F  V  T  C  M  A  D  V  G  Y  L  P  Q  S  E  K  L  K  R  G  D  V  V  I  F  S  M  A  T  A  I  I  M  H  C  Y  A  M  E  R  D  V  F  K  S  K  Y  L  N  V  L  D  W  V  F  G  V  P  L  P  P  Y  D  T  T  P  R  K  K  W  R  S  S  S  I  *  R  T  A  R  Y  N  C  T  Q  C  M  S  Q  K  N  N  L  T  L  Y  T  T  I  V  I  E  L  I  Y  L  H  A  N  V  E  *  F  M  V  C  L  V  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39307" stop="39171"/>
                    <exon start="38896" stop="38816"/>
                    <exon start="38636" stop="38570"/>
                    <exon start="38489" stop="38175"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVHENQGCGAHFISFLIQAYKRALPVYLPVYLVPALIVHRQGILKRPNTILAKGLLGTARSSLFLSMYCSSAWLWTCFLFRLFKRCNIPMVALGTFPTGLALAIEKKSRRIEISLYCLARALESFVTCMADVGYLPQSEKLKRGDVVIFSMATAIIMHCYAMERDVFKSKYLNVLDWVFGVPLPPYDTTPRKKWRSSSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40257" e_stop="39985"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40257" e_stop="39985" e_length="273"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40257" stop="39985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249653" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAATCTAAATTTAGGGTTTAATTGTCAAATTTTTAAAATAAAAATGAGGGCTCTTGGAGACTTGAGCGATATCTTTTTATTAAGGGCCCGTAAATTGATGCCATTGACTATTTCTAGTAAGTTTATGTAGTCACTACTTTATGATTTAGATTAAACTGCTTTGTAGATTAATGAATTTTATCCATATCATAGTTCTTTTTCCTTTTTTGTTGTTTGTTAATTACCCTTTGCCTTTCAATAACCAGCATGCTTGATAGTCAAATACTTTTTTA</gDNA_template>
            <first_frame> *  I  *  I  *  G  L  I  V  K  F  L  K  *  K  *  G  L  L  E  T  *  A  I  S  F  Y  *  G  P  V  N  *  C  H  *  L  F  L  V  S  L  C  S  H  Y  F  M  I  *  I  K  L  L  C  R  L  M  N  F  I  H  I  I  V  L  F  P  F  L  L  F  V  N  Y  P  L  P  F  N  N  Q  H  A  *  *  S  N  T  F  L </first_frame>
            <second_frame>  K  S  K  F  R  V  *  L  S  N  F  *  N  K  N  E  G  S  W  R  L  E  R  Y  L  F  I  K  G  P  *  I  D  A  I  D  Y  F  *  *  V  Y  V  V  T  T  L  *  F  R  L  N  C  F  V  D  *  *  I  L  S  I  S  *  F  F  F  L  F  C  C  L  L  I  T  L  C  L  S  I  T  S  M  L  D  S  Q  I  L  F   </second_frame>
            <third_frame>   N  L  N  L  G  F  N  C  Q  I  F  K  I  K  M  R  A  L  G  D  L  S  D  I  F  L  L  R  A  R  K  L  M  P  L  T  I  S  S  K  F  M  *  S  L  L  Y  D  L  D  *  T  A  L  *  I  N  E  F  Y  P  Y  H  S  S  F  S  F  F  V  V  C  *  L  P  F  A  F  Q  *  P  A  C  L  I  V  K  Y  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0178P03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44681" PGL_stop="45663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44681" e_stop="44954"/>
            <exon e_start="45343" e_stop="45663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.984" e_score="0.960"/>
          <exon-only e_score="0.953"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="44681" e_stop="44954" e_length="274"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.984">
            <gDNA_intron_boundary i_start="44955" i_stop="45342" i_length="388"/>
          </intron>
          <exon e_serial="2" e_score="0.953">
            <gDNA_exon_boundary e_start="45343" e_stop="45663" e_length="321"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44681" stop="44954"/>
              <exon start="45343" stop="45663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435943" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGTTTTTCTTTTGGGGATAGAAGAGAGTAAAATATAGTATCGAGTTTGTGAATCTGGATCTAAGCTAAGAATTTTTCATCAAGTGTTAATAGAGAGAAATTTTAGATTTCATGTCCAACAAACTAGATCCTACCTCTTTAACATCAAGGTGATGAATAACATTGTAATACAATGCTTTTGTACCTCACTACTTAGCAACAGATGTCCTTCATTCCGCTTTGAGAACAATCTTCATGAACTCGTAGACGAAGTAGCTTATGGAGGCAGAAG : GTACTGGTACCTGTAGTAAACTAGGGATTAGTCCTGCATATAGAGCTGGAACACCTCCCTGTTCAACAATCTTCGCACATGTTGCCAACGCACTCAGTTTAGATGCTCGGCCTTGCAATTGAAGATGTCTTCTAATGACCTCAAATGGATAAGTTGCGGCTTCAGCACAAGCACCAGCAATAGCACCATGAAGTAAGGTCCTCATAGGTCCCAACTCAAGCTGGTCAAAAGCATTGAGCTCTGCTCCCTGATTCTTCATATACTCTATTCTTTTTCTGCCTTCAGGTGAATGCAAATAAGCTGATTTTAATATGTCATATA</gDNA_template>
            <first_frame> K  M  F  F  F  W  G  *  K  R  V  K  Y  S  I  E  F  V  N  L  D  L  S  *  E  F  F  I  K  C  *  *  R  E  I  L  D  F  M  S  N  K  L  D  P  T  S  L  T  S  R  *  *  I  T  L  *  Y  N  A  F  V  P  H  Y  L  A  T  D  V  L  H  S  A  L  R  T  I  F  M  N  S  *  T  K  *  L  M  E  A  E   : G  T  G  T  C  S  K  L  G  I  S  P  A  Y  R  A  G  T  P  P  C  S  T  I  F  A  H  V  A  N  A  L  S  L  D  A  R  P  C  N  *  R  C  L  L  M  T  S  N  G  *  V  A  A  S  A  Q  A  P  A  I  A  P  *  S  K  V  L  I  G  P  N  S  S  W  S  K  A  L  S  S  A  P  *  F  F  I  Y  S  I  L  F  L  P  S  G  E  C  K  *  A  D  F  N  M  S  Y  </first_frame>
            <second_frame>  K  C  F  S  F  G  D  R  R  E  *  N  I  V  S  S  L  *  I  W  I  *  A  K  N  F  S  S  S  V  N  R  E  K  F  *  I  S  C  P  T  N  *  I  L  P  L  *  H  Q  G  D  E  *  H  C  N  T  M  L  L  Y  L  T  T  *  Q  Q  M  S  F  I  P  L  *  E  Q  S  S  *  T  R  R  R  S  S  L  W  R  Q  K  :  V  L  V  P  V  V  N  *  G  L  V  L  H  I  E  L  E  H  L  P  V  Q  Q  S  S  H  M  L  P  T  H  S  V  *  M  L  G  L  A  I  E  D  V  F  *  *  P  Q  M  D  K  L  R  L  Q  H  K  H  Q  Q  *  H  H  E  V  R  S  S  *  V  P  T  Q  A  G  Q  K  H  *  A  L  L  P  D  S  S  Y  T  L  F  F  F  C  L  Q  V  N  A  N  K  L  I  L  I  C  H  I </second_frame>
            <third_frame>   N  V  F  L  L  G  I  E  E  S  K  I  *  Y  R  V  C  E  S  G  S  K  L  R  I  F  H  Q  V  L  I  E  R  N  F  R  F  H  V  Q  Q  T  R  S  Y  L  F  N  I  K  V  M  N  N  I  V  I  Q  C  F  C  T  S  L  L  S  N  R  C  P  S  F  R  F  E  N  N  L  H  E  L  V  D  E  V  A  Y  G  G  R  R :   Y  W  Y  L  *  *  T  R  D  *  S  C  I  *  S  W  N  T  S  L  F  N  N  L  R  T  C  C  Q  R  T  Q  F  R  C  S  A  L  Q  L  K  M  S  S  N  D  L  K  W  I  S  C  G  F  S  T  S  T  S  N  S  T  M  K  *  G  P  H  R  S  Q  L  K  L  V  K  S  I  E  L  C  S  L  I  L  H  I  L  Y  S  F  S  A  F  R  *  M  Q  I  S  *  F  *  Y  V  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44722" stop="44954"/>
                    <exon start="45343" stop="45358"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YRVCESGSKLRIFHQVLIERNFRFHVQQTRSYLFNIKVMNNIVIQCFCTSLLSNRCPSFRFENNLHELVDEVAYGGRRYWYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="52448" PGL_stop="45475"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52448" e_stop="51889"/>
            <exon e_start="47980" e_stop="47677"/>
            <exon e_start="45820" e_stop="45475"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52448" e_stop="51889" e_length="560"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="51888" i_stop="47981" i_length="3908"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47980" e_stop="47677" e_length="304"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47676" i_stop="45821" i_length="1856"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45820" e_stop="45475" e_length="346"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52448" stop="51889"/>
              <exon start="47980" stop="47829"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459637" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52448" stop="51897"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E435942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52441" stop="52133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52426" stop="51889"/>
              <exon start="47980" stop="47782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52426" stop="51889"/>
              <exon start="47980" stop="47939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47896" stop="47677"/>
              <exon start="45820" stop="45475"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGGCGACACAAGCAAAGCTGACTTTGACATTTTCCCTTCCATTATCCCATTGAATGCCATCAAAATTCTCCTCAGCTTCACTATACTGTAGAATTTAGAATGACTGGAGTTCATACTATTTGGTTTAAACACTTAGAAAGTCTCACACTTGTAGAAAATCCAGATACAATTTTGTTTTCTGGTGGATTATTTATTGAACCGTTGATTCCTTCTTCAATTACATCTAGTTTTCTAAAAATATCATCAATTGATGATTCCAGTGAGTTACATTCTCCCATTTCTCGTCGTAGTGGACCAATTTTCCGGCGAGAAAAAAAGAGTGTTCGTGCCGGTATTGGGGGTAATTTCTTGTGTTTGAGTTTGTCACTTAAGAAGAATACTGATGTTGTTGGGAATTCCAGTGAATGTTTGTTGAGTAATGGAGACGAGAGTCCAAAGGTGGAAGAGTCTAGTGTCGGCGATGGGGTTGTGAAGAAGCGAAATATTGGGTTACGGGGACGTGGTGCAATGAACACCAGCAAACATTTGTGGGCTGGAGCAGTTGCTGCAATGGTATCAAG : AACTGTTGTTGCTCCACTTGAAAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCACCTCTTGGAGCTCATCAAAACAATTGCAGTTACTCAAGGCTTGAGAGGCTTTTGGAAAGGGAACTTGGTTAATATACTTCGTACTGCTCCTTTTAAGGCAGTTAATTTTTGTGCTTTTGACACATACAGAAAGCAACTCCTAAGATTATCAGGAAATGAAGAAACTACTAACATCGAGCGGTTTGTTGCTGGTGCTGCAGCTGGTGTGACTGCTACTGTTATGTGCTTACCACTGGACACT : ATCCGGACCAAGTTAGTGGCACGGGGTGGAGAAGCCTTGGGTGGTGTGGTTGGAGCTTTTCAACATGTGATCAGAACTGAAGGATTCTTCTCTCTTTATAAGGGACTAGTACCCTCCATTTTGAGTATGGCCCCAGCAGCGGCTGTTTTCTATGGTGTATATGACATATTAAAATCAGCTTATTTGCATTCACCTGAAGGCAGAAAAAGAATAGAGTATATGAAGAATCAGGGAGCAGAGCTCAATGCTTTTGACCAGCTTGAGTTGGGACCTATGAGGACCTTACTTCATGGTGCTATTGCTGGTGCTTGTGCTGAAGCCGCAACTTATCCATTTGAGGTCATTA</gDNA_template>
            <first_frame> R  R  H  K  Q  S  *  L  *  H  F  P  F  H  Y  P  I  E  C  H  Q  N  S  P  Q  L  H  Y  T  V  E  F  R  M  T  G  V  H  T  I  W  F  K  H  L  E  S  L  T  L  V  E  N  P  D  T  I  L  F  S  G  G  L  F  I  E  P  L  I  P  S  S  I  T  S  S  F  L  K  I  S  S  I  D  D  S  S  E  L  H  S  P  I  S  R  R  S  G  P  I  F  R  R  E  K  K  S  V  R  A  G  I  G  G  N  F  L  C  L  S  L  S  L  K  K  N  T  D  V  V  G  N  S  S  E  C  L  L  S  N  G  D  E  S  P  K  V  E  E  S  S  V  G  D  G  V  V  K  K  R  N  I  G  L  R  G  R  G  A  M  N  T  S  K  H  L  W  A  G  A  V  A  A  M  V  S  R :   T  V  V  A  P  L  E  R  L  K  L  E  Y  I  V  R  G  E  Q  K  H  L  L  E  L  I  K  T  I  A  V  T  Q  G  L  R  G  F  W  K  G  N  L  V  N  I  L  R  T  A  P  F  K  A  V  N  F  C  A  F  D  T  Y  R  K  Q  L  L  R  L  S  G  N  E  E  T  T  N  I  E  R  F  V  A  G  A  A  A  G  V  T  A  T  V  M  C  L  P  L  D  T  :  I  R  T  K  L  V  A  R  G  G  E  A  L  G  G  V  V  G  A  F  Q  H  V  I  R  T  E  G  F  F  S  L  Y  K  G  L  V  P  S  I  L  S  M  A  P  A  A  A  V  F  Y  G  V  Y  D  I  L  K  S  A  Y  L  H  S  P  E  G  R  K  R  I  E  Y  M  K  N  Q  G  A  E  L  N  A  F  D  Q  L  E  L  G  P  M  R  T  L  L  H  G  A  I  A  G  A  C  A  E  A  A  T  Y  P  F  E  V  I  </first_frame>
            <second_frame>  G  D  T  S  K  A  D  F  D  I  F  P  S  I  I  P  L  N  A  I  K  I  L  L  S  F  T  I  L  *  N  L  E  *  L  E  F  I  L  F  G  L  N  T  *  K  V  S  H  L  *  K  I  Q  I  Q  F  C  F  L  V  D  Y  L  L  N  R  *  F  L  L  Q  L  H  L  V  F  *  K  Y  H  Q  L  M  I  P  V  S  Y  I  L  P  F  L  V  V  V  D  Q  F  S  G  E  K  K  R  V  F  V  P  V  L  G  V  I  S  C  V  *  V  C  H  L  R  R  I  L  M  L  L  G  I  P  V  N  V  C  *  V  M  E  T  R  V  Q  R  W  K  S  L  V  S  A  M  G  L  *  R  S  E  I  L  G  Y  G  D  V  V  Q  *  T  P  A  N  I  C  G  L  E  Q  L  L  Q  W  Y  Q   : E  L  L  L  L  H  L  K  D  *  S  W  N  I  *  F  V  V  N  R  S  T  S  W  S  S  S  K  Q  L  Q  L  L  K  A  *  E  A  F  G  K  G  T  W  L  I  Y  F  V  L  L  L  L  R  Q  L  I  F  V  L  L  T  H  T  E  S  N  S  *  D  Y  Q  E  M  K  K  L  L  T  S  S  G  L  L  L  V  L  Q  L  V  *  L  L  L  L  C  A  Y  H  W  T  L :   S  G  P  S  *  W  H  G  V  E  K  P  W  V  V  W  L  E  L  F  N  M  *  S  E  L  K  D  S  S  L  F  I  R  D  *  Y  P  P  F  *  V  W  P  Q  Q  R  L  F  S  M  V  Y  M  T  Y  *  N  Q  L  I  C  I  H  L  K  A  E  K  E  *  S  I  *  R  I  R  E  Q  S  S  M  L  L  T  S  L  S  W  D  L  *  G  P  Y  F  M  V  L  L  L  V  L  V  L  K  P  Q  L  I  H  L  R  S  L </second_frame>
            <third_frame>   A  T  Q  A  K  L  T  L  T  F  S  L  P  L  S  H  *  M  P  S  K  F  S  S  A  S  L  Y  C  R  I  *  N  D  W  S  S  Y  Y  L  V  *  T  L  R  K  S  H  T  C  R  K  S  R  Y  N  F  V  F  W  W  I  I  Y  *  T  V  D  S  F  F  N  Y  I  *  F  S  K  N  I  I  N  *  *  F  Q  *  V  T  F  S  H  F  S  S  *  W  T  N  F  P  A  R  K  K  E  C  S  C  R  Y  W  G  *  F  L  V  F  E  F  V  T  *  E  E  Y  *  C  C  W  E  F  Q  *  M  F  V  E  *  W  R  R  E  S  K  G  G  R  V  *  C  R  R  W  G  C  E  E  A  K  Y  W  V  T  G  T  W  C  N  E  H  Q  Q  T  F  V  G  W  S  S  C  C  N  G  I  K  :  N  C  C  C  S  T  *  K  T  K  A  G  I  Y  S  S  W  *  T  E  A  P  L  G  A  H  Q  N  N  C  S  Y  S  R  L  E  R  L  L  E  R  E  L  G  *  Y  T  S  Y  C  S  F  *  G  S  *  F  L  C  F  *  H  I  Q  K  A  T  P  K  I  I  R  K  *  R  N  Y  *  H  R  A  V  C  C  W  C  C  S  W  C  D  C  Y  C  Y  V  L  T  T  G  H   : Y  P  D  Q  V  S  G  T  G  W  R  S  L  G  W  C  G  W  S  F  S  T  C  D  Q  N  *  R  I  L  L  S  L  *  G  T  S  T  L  H  F  E  Y  G  P  S  S  G  C  F  L  W  C  I  *  H  I  K  I  S  L  F  A  F  T  *  R  Q  K  K  N  R  V  Y  E  E  S  G  S  R  A  Q  C  F  *  P  A  *  V  G  T  Y  E  D  L  T  S  W  C  Y  C  W  C  L  C  *  S  R  N  L  S  I  *  G  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52421" stop="51889"/>
                    <exon start="47980" stop="47677"/>
                    <exon start="45820" stop="45476"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1182</number_coding_nucleotides>
                  <number_encoded_amino_acids>394</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFPFHYPIECHQNSPQLHYTVEFRMTGVHTIWFKHLESLTLVENPDTILFSGGLFIEPLIPSSITSSFLKISSIDDSSELHSPISRRSGPIFRREKKSVRAGIGGNFLCLSLSLKKNTDVVGNSSECLLSNGDESPKVEESSVGDGVVKKRNIGLRGRGAMNTSKHLWAGAVAAMVSRTVVAPLERLKLEYIVRGEQKHLLELIKTIAVTQGLRGFWKGNLVNILRTAPFKAVNFCAFDTYRKQLLRLSGNEETTNIERFVAGAAAGVTATVMCLPLDTIRTKLVARGGEALGGVVGAFQHVIRTEGFFSLYKGLVPSILSMAPAAAVFYGVYDILKSAYLHSPEGRKRIEYMKNQGAELNAFDQLELGPMRTLLHGAIAGACAEAATYPFEVI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="65380" PGL_stop="63964"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65380" e_stop="64734"/>
            <exon e_start="64151" e_stop="63964"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="0.998"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="65380" e_stop="64734" e_length="647"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64733" i_stop="64152" i_length="582"/>
          </intron>
          <exon e_serial="2" e_score="0.926">
            <gDNA_exon_boundary e_start="64151" e_stop="63964" e_length="188"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65380" stop="64734"/>
              <exon start="64151" stop="64031"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65365" stop="64785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65365" stop="64785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65364" stop="64834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272348" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65344" stop="64762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551393" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65344" stop="64762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688227" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64816" stop="64734"/>
              <exon start="64151" stop="63964"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACAGTTTTGCCTCAATTTCAAGAAAACAATGATTTCCTTTCTTTGGTTAATACTTCTAACACACATCAGGTGGGTAAATACAGCAGATCTAGCAGATGTTTCAACTTCAAAGGTCCTAAACATATTCATATTAGCCGGACAAAGCAACATGTCCGGCCGAGGTGGTGTCATTAACCATGGCCAAAATGGCCTGGCTAATGAGACATGGGATGGTGTGATTCCACCAGAATGTCAATCCAACTCAAACATCCTCAGACTCAATGCAGGACTTACATGGGTTGAAGCTCAGGAACCACTTCACCAAGACATAGATTTGGGTAAAGTTTGTGGAGTTGGGCCAGGTATGTCATTTGCCAATTCAGTTCTGAAGAGAGATCCAAGTATTGGAGTGATCGGTTTGGTGCCTTGTGCTATTGGAGGAACAAATATAAGCGAATGGGCTCGTGGCAGTGTTCTGTATAATCATATGATAAGGAGAACAGAAGCTGCTTTGCAAGGAGGTGGAAAACTTCAAGCTTTGTTGTGGTACCAAGGTGAGAGTGATACAGAGACTCTTGAAGATGCCAAATTGTACAGATTTAGACTGAAGAGATTATTCAAGAATGTGCTCCGTGATCTACAGTCACCTACATTGCCTGTCATTCAG : GTGGCATTGGCATCATCTATTGGATCTTATATGGAGCAGGTTAGAAAAGCTCAACTGAGTATTAATCTTCCAAATGTGAGAACTGTTGATGCCAAAGGGCTACCTTTAGGGATGGATTATGTGCACATTACAACACTAGCACAAGTCCAGCTTGGTCAAATGCTGGCTGATACCTTCCTTCAGACTCA</gDNA_template>
            <first_frame> H  S  F  A  S  I  S  R  K  Q  *  F  P  F  F  G  *  Y  F  *  H  T  S  G  G  *  I  Q  Q  I  *  Q  M  F  Q  L  Q  R  S  *  T  Y  S  Y  *  P  D  K  A  T  C  P  A  E  V  V  S  L  T  M  A  K  M  A  W  L  M  R  H  G  M  V  *  F  H  Q  N  V  N  P  T  Q  T  S  S  D  S  M  Q  D  L  H  G  L  K  L  R  N  H  F  T  K  T  *  I  W  V  K  F  V  E  L  G  Q  V  C  H  L  P  I  Q  F  *  R  E  I  Q  V  L  E  *  S  V  W  C  L  V  L  L  E  E  Q  I  *  A  N  G  L  V  A  V  F  C  I  I  I  *  *  G  E  Q  K  L  L  C  K  E  V  E  N  F  K  L  C  C  G  T  K  V  R  V  I  Q  R  L  L  K  M  P  N  C  T  D  L  D  *  R  D  Y  S  R  M  C  S  V  I  Y  S  H  L  H  C  L  S  F  R :   W  H  W  H  H  L  L  D  L  I  W  S  R  L  E  K  L  N  *  V  L  I  F  Q  M  *  E  L  L  M  P  K  G  Y  L  *  G  W  I  M  C  T  L  Q  H  *  H  K  S  S  L  V  K  C  W  L  I  P  S  F  R  L  </first_frame>
            <second_frame>  T  V  L  P  Q  F  Q  E  N  N  D  F  L  S  L  V  N  T  S  N  T  H  Q  V  G  K  Y  S  R  S  S  R  C  F  N  F  K  G  P  K  H  I  H  I  S  R  T  K  Q  H  V  R  P  R  W  C  H  *  P  W  P  K  W  P  G  *  *  D  M  G  W  C  D  S  T  R  M  S  I  Q  L  K  H  P  Q  T  Q  C  R  T  Y  M  G  *  S  S  G  T  T  S  P  R  H  R  F  G  *  S  L  W  S  W  A  R  Y  V  I  C  Q  F  S  S  E  E  R  S  K  Y  W  S  D  R  F  G  A  L  C  Y  W  R  N  K  Y  K  R  M  G  S  W  Q  C  S  V  *  S  Y  D  K  E  N  R  S  C  F  A  R  R  W  K  T  S  S  F  V  V  V  P  R  *  E  *  Y  R  D  S  *  R  C  Q  I  V  Q  I  *  T  E  E  I  I  Q  E  C  A  P  *  S  T  V  T  Y  I  A  C  H  S   : G  G  I  G  I  I  Y  W  I  L  Y  G  A  G  *  K  S  S  T  E  Y  *  S  S  K  C  E  N  C  *  C  Q  R  A  T  F  R  D  G  L  C  A  H  Y  N  T  S  T  S  P  A  W  S  N  A  G  *  Y  L  P  S  D  S </second_frame>
            <third_frame>   Q  F  C  L  N  F  K  K  T  M  I  S  F  L  W  L  I  L  L  T  H  I  R  W  V  N  T  A  D  L  A  D  V  S  T  S  K  V  L  N  I  F  I  L  A  G  Q  S  N  M  S  G  R  G  G  V  I  N  H  G  Q  N  G  L  A  N  E  T  W  D  G  V  I  P  P  E  C  Q  S  N  S  N  I  L  R  L  N  A  G  L  T  W  V  E  A  Q  E  P  L  H  Q  D  I  D  L  G  K  V  C  G  V  G  P  G  M  S  F  A  N  S  V  L  K  R  D  P  S  I  G  V  I  G  L  V  P  C  A  I  G  G  T  N  I  S  E  W  A  R  G  S  V  L  Y  N  H  M  I  R  R  T  E  A  A  L  Q  G  G  G  K  L  Q  A  L  L  W  Y  Q  G  E  S  D  T  E  T  L  E  D  A  K  L  Y  R  F  R  L  K  R  L  F  K  N  V  L  R  D  L  Q  S  P  T  L  P  V  I  Q  :  V  A  L  A  S  S  I  G  S  Y  M  E  Q  V  R  K  A  Q  L  S  I  N  L  P  N  V  R  T  V  D  A  K  G  L  P  L  G  M  D  Y  V  H  I  T  T  L  A  Q  V  Q  L  G  Q  M  L  A  D  T  F  L  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65378" stop="64734"/>
                    <exon start="64151" stop="63966"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>831</number_coding_nucleotides>
                  <number_encoded_amino_acids>277</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QFCLNFKKTMISFLWLILLTHIRWVNTADLADVSTSKVLNIFILAGQSNMSGRGGVINHGQNGLANETWDGVIPPECQSNSNILRLNAGLTWVEAQEPLHQDIDLGKVCGVGPGMSFANSVLKRDPSIGVIGLVPCAIGGTNISEWARGSVLYNHMIRRTEAALQGGGKLQALLWYQGESDTETLEDAKLYRFRLKRLFKNVLRDLQSPTLPVIQVALASSIGSYMEQVRKAQLSINLPNVRTVDAKGLPLGMDYVHITTLAQVQLGQMLADTFLQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="70181" PGL_stop="68193"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70181" e_stop="69517"/>
            <exon e_start="68676" e_stop="68193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.997"/>
          <exon-only e_score="0.894"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="70181" e_stop="69517" e_length="665"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69516" i_stop="68677" i_length="840"/>
          </intron>
          <exon e_serial="2" e_score="0.894">
            <gDNA_exon_boundary e_start="68676" e_stop="68193" e_length="484"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70181" stop="69517"/>
              <exon start="68676" stop="68565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E724470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70170" stop="69587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E588854" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70166" stop="69517"/>
              <exon start="68676" stop="68455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727773" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70165" stop="69517"/>
              <exon start="68676" stop="68567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482096" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70165" stop="69517"/>
              <exon start="68676" stop="68587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E605574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70165" stop="69517"/>
              <exon start="68676" stop="68639"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E486069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70162" stop="69517"/>
              <exon start="68676" stop="68382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E746643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70162" stop="69517"/>
              <exon start="68676" stop="68647"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70162" stop="69670"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70119" stop="69517"/>
              <exon start="68676" stop="68601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70116" stop="69517"/>
              <exon start="68676" stop="68483"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70116" stop="69517"/>
              <exon start="68676" stop="68649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344127" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70112" stop="69594"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70105" stop="69517"/>
              <exon start="68676" stop="68404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70095" stop="69540"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307202" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70086" stop="69517"/>
              <exon start="68676" stop="68388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="69517"/>
              <exon start="68676" stop="68539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70085" stop="69589"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726049" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70083" stop="69517"/>
              <exon start="68676" stop="68354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70082" stop="69684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293279" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70079" stop="69517"/>
              <exon start="68676" stop="68656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70075" stop="69517"/>
              <exon start="68676" stop="68423"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70071" stop="69672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279590" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69987" stop="69809"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310943" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69959" stop="69517"/>
              <exon start="68676" stop="68388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69946" stop="69517"/>
              <exon start="68676" stop="68477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415934" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69946" stop="69560"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E437974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69909" stop="69517"/>
              <exon start="68676" stop="68569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247397" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69844" stop="69517"/>
              <exon start="68676" stop="68600"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69698" stop="69517"/>
              <exon start="68676" stop="68292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E415935" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69659" stop="69517"/>
              <exon start="68676" stop="68226"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69652" stop="69517"/>
              <exon start="68676" stop="68387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350629" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69652" stop="69517"/>
              <exon start="68676" stop="68387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69652" stop="69517"/>
              <exon start="68676" stop="68387"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355118" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68526" stop="68193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68406" stop="68222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAACATCTATATATACAGGAAAACAAAAACCCTAACCCTAATTCTATATAAACCACTATTATTCTTCATCGCCAGCCCAAACTCATCATCCATCGTTGTTTTTCTCTCGAAAAAAACTTTGTTTCTTTCATCTTAAGAATTGTTTTCTTTCTTTTTCTTTCGAATTCCATTGTGAATGGTAGAAATCCTCAAGAACTTGTTAATGATCTCCCCTTTAACACCAAAAAGGGGGATCTCTGTTTCATCTGCTTTCTCCTTTGGCTCTTGCAAAGAAGGCTGGTACTTCCGCTGCCTCGGCGTTGACCCTTAAACGCTGTTCGCTTTTCCCACAATTTCTCGAAATCGTGATTTTTTCTTCTTTTTGCTCTGATTTGTATGATTGAAAATAAATTTTGGAAAATTATCAGAAAAAAATTTGAAATTAAAAACAAGATGTTGCTTTACAAGCCAAAGAAGAATCAAACCGGAAAAGGTAACCGGATTTTGATTAGTATTACGGTTCTCGGAAGTGCCGGTCCGATCCGGTTTGTTGTTAATGAAGAGGAGCTTGTGGCTGATGTTATTGATACTGCAATGAAAGCTTATGCTAGGGAAGGCCGCCTTCCTGTTCTTGGTTCTGACTTCAGTAACTTTGTGCTTTATTGCCCCAGTGCTGGCACTGAAG : CTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATATTTTAAGCATGCTCGTTACGGGTAAATGAGTAAGTC</gDNA_template>
            <first_frame> E  T  S  I  Y  T  G  K  Q  K  P  *  P  *  F  Y  I  N  H  Y  Y  S  S  S  P  A  Q  T  H  H  P  S  L  F  F  S  R  K  K  L  C  F  F  H  L  K  N  C  F  L  S  F  S  F  E  F  H  C  E  W  *  K  S  S  R  T  C  *  *  S  P  L  *  H  Q  K  G  G  S  L  F  H  L  L  S  P  L  A  L  A  K  K  A  G  T  S  A  A  S  A  L  T  L  K  R  C  S  L  F  P  Q  F  L  E  I  V  I  F  S  S  F  C  S  D  L  Y  D  *  K  *  I  L  E  N  Y  Q  K  K  I  *  N  *  K  Q  D  V  A  L  Q  A  K  E  E  S  N  R  K  R  *  P  D  F  D  *  Y  Y  G  S  R  K  C  R  S  D  P  V  C  C  *  *  R  G  A  C  G  *  C  Y  *  Y  C  N  E  S  L  C  *  G  R  P  P  S  C  S  W  F  *  L  Q  *  L  C  A  L  L  P  Q  C  W  H  *  S :   S  W  S  M  G  D  Y  W  I  A  W  S  S  E  L  H  A  V  Q  E  V  I  T  G  R  E  N  S  R  W  W  *  A  V  T  N  P  E  G  S  W  K  L  E  D  M  V  *  Q  V  N  Q  *  Q  D  S  I  S  L  I  K  *  T  R  S  F  E  I  F  L  L  C  V  C  R  N  S  C  V  H  M  R  P  L  I  N  K  C  S  I  C  V  F  N  N  G  K  V  K  P  F  V  S  F  *  V  F  E  V  C  S  M  C  V  S  S  L  N  W  V  N  S  L  V  G  V  S  V  V  K  L  Q  A  D  I  F  Y  E  R  N  P  V  L  F  A  F  I  F  I  F  *  A  C  S  L  R  V  N  E  *  V </first_frame>
            <second_frame>  K  H  L  Y  I  Q  E  N  K  N  P  N  P  N  S  I  *  T  T  I  I  L  H  R  Q  P  K  L  I  I  H  R  C  F  S  L  E  K  N  F  V  S  F  I  L  R  I  V  F  F  L  F  L  S  N  S  I  V  N  G  R  N  P  Q  E  L  V  N  D  L  P  F  N  T  K  K  G  D  L  C  F  I  C  F  L  L  W  L  L  Q  R  R  L  V  L  P  L  P  R  R  *  P  L  N  A  V  R  F  S  H  N  F  S  K  S  *  F  F  L  L  F  A  L  I  C  M  I  E  N  K  F  W  K  I  I  R  K  K  F  E  I  K  N  K  M  L  L  Y  K  P  K  K  N  Q  T  G  K  G  N  R  I  L  I  S  I  T  V  L  G  S  A  G  P  I  R  F  V  V  N  E  E  E  L  V  A  D  V  I  D  T  A  M  K  A  Y  A  R  E  G  R  L  P  V  L  G  S  D  F  S  N  F  V  L  Y  C  P  S  A  G  T  E   : A  L  G  P  W  E  T  I  G  S  L  G  V  R  N  F  M  L  F  K  K  S  S  Q  G  E  K  T  A  D  G  G  K  Q  S  P  I  R  K  G  A  G  S  W  K  T  W  F  N  K  S  I  S  S  K  I  A  S  H  *  S  S  R  L  G  L  L  K  S  F  F  Y  A  S  V  A  I  R  V  F  T  C  D  P  *  *  T  S  A  V  F  V  F  S  I  M  A  K  *  N  P  L  S  A  F  E  F  L  K  C  V  Q  C  V  L  V  L  *  T  G  *  T  V  S  L  V  F  Q  *  S  N  Y  K  Q  I  F  S  M  K  G  I  L  F  S  L  H  L  Y  L  Y  F  K  H  A  R  Y  G  *  M  S  K   </second_frame>
            <third_frame>   N  I  Y  I  Y  R  K  T  K  T  L  T  L  I  L  Y  K  P  L  L  F  F  I  A  S  P  N  S  S  S  I  V  V  F  L  S  K  K  T  L  F  L  S  S  *  E  L  F  S  F  F  F  F  R  I  P  L  *  M  V  E  I  L  K  N  L  L  M  I  S  P  L  T  P  K  R  G  I  S  V  S  S  A  F  S  F  G  S  C  K  E  G  W  Y  F  R  C  L  G  V  D  P  *  T  L  F  A  F  P  T  I  S  R  N  R  D  F  F  F  F  L  L  *  F  V  *  L  K  I  N  F  G  K  L  S  E  K  N  L  K  L  K  T  R  C  C  F  T  S  Q  R  R  I  K  P  E  K  V  T  G  F  *  L  V  L  R  F  S  E  V  P  V  R  S  G  L  L  L  M  K  R  S  L  W  L  M  L  L  I  L  Q  *  K  L  M  L  G  K  A  A  F  L  F  L  V  L  T  S  V  T  L  C  F  I  A  P  V  L  A  L  K  :  L  L  V  H  G  R  L  L  D  R  L  E  F  G  T  S  C  C  S  R  S  H  H  R  A  R  K  Q  P  M  V  V  S  S  H  Q  S  G  R  E  L  E  A  G  R  H  G  L  T  S  Q  S  V  A  R  *  H  L  T  D  Q  V  D  S  V  F  *  N  L  S  S  M  R  L  S  Q  F  V  C  S  H  A  T  P  N  K  Q  V  Q  Y  L  C  F  Q  *  W  Q  S  K  T  L  C  Q  L  L  S  F  *  S  V  F  N  V  C  *  F  F  E  L  G  K  Q  S  R  W  C  F  S  S  Q  I  T  S  R  Y  F  L  *  K  E  S  C  S  L  C  I  Y  I  Y  I  L  S  M  L  V  T  G  K  *  V  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69832" stop="69517"/>
                    <exon start="68676" stop="68498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFLLFALICMIENKFWKIIRKKFEIKNKMLLYKPKKNQTGKGNRILISITVLGSAGPIRFVVNEEELVADVIDTAMKAYAREGRLPVLGSDFSNFVLYCPSAGTEALGPWETIGSLGVRNFMLFKKSSQGEKTADGGKQSPIRKGAGSWKTWFNKSISSKIASH*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70129" stop="69878"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTIILHRQPKLIIHRCFSLEKNFVSFILRIVFFLFLSNSIVNGRNPQELVNDLPFNTKKGDLCFICFLLWLLQRRLVLPLPRR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="68926" e_stop="68193"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.949"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="68926" e_stop="68193" e_length="734"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68926" stop="68246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68902" stop="68537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68526" stop="68193"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68406" stop="68222"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288984" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTGGTGTTTGTTGGAGAAAAGGTCAAACTGTTGAGAGCTGAGGGTATATGGGGAACTCCTTCTGTACCCTCTGATCTGCCTATGCACTTGCCTTCTCAGACCCTGATTTGTGGGATTACGCTGTGTTTGATGTACCGTTGGTGCTCACTCTAAATTAGTAGATGAACTGCTTGTTGTCCCGTGTTATAGAGGCTCTTGTTTTTTGTCCCAATGGAGTATTTTACTTGTGCTTATGTTCACATTGCAGCTCTTGGTCCATGGGAGACTATTGGATCGCTTGGAGTTCGGAACTTCATGCTGTTCAAGAAGTCATCACAGGGCGAGAAAACAGCCGATGGTGGTAAGCAGTCACCAATCCGGAAGGGAGCTGGAAGCTGGAAGACATGGTTTAACAAGTCAATCAGTAGCAAGATAGCATCTCACTGATCAAGTAGACTCGGTCTTTTGAAATCTTTCTTCTATGCGTCTGTCGCAATTCGTGTGTTCACATGCGACCCCTAATAAACAAGTGCAGTATTTGTGTTTTCAATAATGGCAAAGTAAAACCCTTTGTCAGCTTTTGAGTTTTTGAAGTGTGTTCAATGTGTGTTAGTTCTTTGAACTGGGTAAACAGTCTCGTTGGTGTTTCAGTAGTCAAATTACAAGCAGATATTTTCTATGAAAGGAATCCTGTTCTCTTTGCATTTATATTTATATTTTAAGCATGCTCGTTACGGGTAAATGAGTAAGTC</gDNA_template>
            <first_frame> I  L  V  F  V  G  E  K  V  K  L  L  R  A  E  G  I  W  G  T  P  S  V  P  S  D  L  P  M  H  L  P  S  Q  T  L  I  C  G  I  T  L  C  L  M  Y  R  W  C  S  L  *  I  S  R  *  T  A  C  C  P  V  L  *  R  L  L  F  F  V  P  M  E  Y  F  T  C  A  Y  V  H  I  A  A  L  G  P  W  E  T  I  G  S  L  G  V  R  N  F  M  L  F  K  K  S  S  Q  G  E  K  T  A  D  G  G  K  Q  S  P  I  R  K  G  A  G  S  W  K  T  W  F  N  K  S  I  S  S  K  I  A  S  H  *  S  S  R  L  G  L  L  K  S  F  F  Y  A  S  V  A  I  R  V  F  T  C  D  P  *  *  T  S  A  V  F  V  F  S  I  M  A  K  *  N  P  L  S  A  F  E  F  L  K  C  V  Q  C  V  L  V  L  *  T  G  *  T  V  S  L  V  F  Q  *  S  N  Y  K  Q  I  F  S  M  K  G  I  L  F  S  L  H  L  Y  L  Y  F  K  H  A  R  Y  G  *  M  S  K   </first_frame>
            <second_frame>  F  W  C  L  L  E  K  R  S  N  C  *  E  L  R  V  Y  G  E  L  L  L  Y  P  L  I  C  L  C  T  C  L  L  R  P  *  F  V  G  L  R  C  V  *  C  T  V  G  A  H  S  K  L  V  D  E  L  L  V  V  P  C  Y  R  G  S  C  F  L  S  Q  W  S  I  L  L  V  L  M  F  T  L  Q  L  L  V  H  G  R  L  L  D  R  L  E  F  G  T  S  C  C  S  R  S  H  H  R  A  R  K  Q  P  M  V  V  S  S  H  Q  S  G  R  E  L  E  A  G  R  H  G  L  T  S  Q  S  V  A  R  *  H  L  T  D  Q  V  D  S  V  F  *  N  L  S  S  M  R  L  S  Q  F  V  C  S  H  A  T  P  N  K  Q  V  Q  Y  L  C  F  Q  *  W  Q  S  K  T  L  C  Q  L  L  S  F  *  S  V  F  N  V  C  *  F  F  E  L  G  K  Q  S  R  W  C  F  S  S  Q  I  T  S  R  Y  F  L  *  K  E  S  C  S  L  C  I  Y  I  Y  I  L  S  M  L  V  T  G  K  *  V  S  </second_frame>
            <third_frame>   F  G  V  C  W  R  K  G  Q  T  V  E  S  *  G  Y  M  G  N  S  F  C  T  L  *  S  A  Y  A  L  A  F  S  D  P  D  L  W  D  Y  A  V  F  D  V  P  L  V  L  T  L  N  *  *  M  N  C  L  L  S  R  V  I  E  A  L  V  F  C  P  N  G  V  F  Y  L  C  L  C  S  H  C  S  S  W  S  M  G  D  Y  W  I  A  W  S  S  E  L  H  A  V  Q  E  V  I  T  G  R  E  N  S  R  W  W  *  A  V  T  N  P  E  G  S  W  K  L  E  D  M  V  *  Q  V  N  Q  *  Q  D  S  I  S  L  I  K  *  T  R  S  F  E  I  F  L  L  C  V  C  R  N  S  C  V  H  M  R  P  L  I  N  K  C  S  I  C  V  F  N  N  G  K  V  K  P  F  V  S  F  *  V  F  E  V  C  S  M  C  V  S  S  L  N  W  V  N  S  L  V  G  V  S  V  V  K  L  Q  A  D  I  F  Y  E  R  N  P  V  L  F  A  F  I  F  I  F  *  A  C  S  L  R  V  N  E  *  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68793" stop="68509"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CTVGAHSKLVDELLVVPCYRGSCFLSQWSILLVLMFTLQLLVHGRLLDRLEFGTSCCSRSHHRARKQPMVVSSHQSGRELEAGRHGLTSQSVAR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68734" stop="68498"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLLFFVPMEYFTCAYVHIAALGPWETIGSLGVRNFMLFKKSSQGEKTADGGKQSPIRKGAGSWKTWFNKSISSKIASH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="69714" PGL_stop="70091"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69714" e_stop="70091"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="69714" e_stop="70091" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69714" stop="70091"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280768" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCGGTTTGATTCTTCTTTGGCTTGTAAAGCAACATCTTGTTTTTAATTTCAAATTTTTTTCTGATAATTTTCCAAAATTTATTTTCAATCATACAAATCAGAGCAAAAAGAAGAAAAAATCACGATTTCGAGAAATTGTGGGAAAAGCGAACAGCGTTTAAGGGTCAACGCCGAGGCAGCGGAAGTACCAGCCTTCTTTGCAAGAGCCAAAGGAGAAAGCAGATGAAACAGAGATCCCCCTTTTTGGTGTTAAAGGGGAGATCATTAACAAGTTCTTGAGGATTTCTACCATTCACAATGGAATTCGAAAGAAAAAGAAAGAAAACAATTCTTAAGATGAAAGAAACAAAGTTTTTTTCGAGAGAAAAACAACGATGG</gDNA_template>
            <first_frame> P  V  *  F  F  F  G  L  *  S  N  I  L  F  L  I  S  N  F  F  L  I  I  F  Q  N  L  F  S  I  I  Q  I  R  A  K  R  R  K  N  H  D  F  E  K  L  W  E  K  R  T  A  F  K  G  Q  R  R  G  S  G  S  T  S  L  L  C  K  S  Q  R  R  K  Q  M  K  Q  R  S  P  F  L  V  L  K  G  R  S  L  T  S  S  *  G  F  L  P  F  T  M  E  F  E  R  K  R  K  K  T  I  L  K  M  K  E  T  K  F  F  S  R  E  K  Q  R  W </first_frame>
            <second_frame>  R  F  D  S  S  L  A  C  K  A  T  S  C  F  *  F  Q  I  F  F  *  *  F  S  K  I  Y  F  Q  S  Y  K  S  E  Q  K  E  E  K  I  T  I  S  R  N  C  G  K  S  E  Q  R  L  R  V  N  A  E  A  A  E  V  P  A  F  F  A  R  A  K  G  E  S  R  *  N  R  D  P  P  F  W  C  *  R  G  D  H  *  Q  V  L  E  D  F  Y  H  S  Q  W  N  S  K  E  K  E  R  K  Q  F  L  R  *  K  K  Q  S  F  F  R  E  K  N  N  D   </second_frame>
            <third_frame>   G  L  I  L  L  W  L  V  K  Q  H  L  V  F  N  F  K  F  F  S  D  N  F  P  K  F  I  F  N  H  T  N  Q  S  K  K  K  K  K  S  R  F  R  E  I  V  G  K  A  N  S  V  *  G  S  T  P  R  Q  R  K  Y  Q  P  S  L  Q  E  P  K  E  K  A  D  E  T  E  I  P  L  F  G  V  K  G  E  I  I  N  K  F  L  R  I  S  T  I  H  N  G  I  R  K  K  K  K  E  N  N  S  *  D  E  R  N  K  V  F  F  E  R  K  T  T  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69741" stop="69992"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNILFLISNFFLIIFQNLFSIIQIRAKRRKNHDFEKLWEKRTAFKGQRRGSGSTSLLCKSQRRKQMKQRSPFLVLKGRSLTSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="73411" PGL_stop="77614"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73411" e_stop="73476"/>
            <exon e_start="73667" e_stop="73836"/>
            <exon e_start="75973" e_stop="76142"/>
            <exon e_start="76225" e_stop="76433"/>
            <exon e_start="77569" e_stop="77614"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.985" e_score="0.848"/>
          <exon-intron don_prob="0.456" acc_prob="0.998" e_score="0.982"/>
          <exon-intron don_prob="0.895" acc_prob="0.944" e_score="0.994"/>
          <exon-intron don_prob="0.996" acc_prob="1.000" e_score="0.976"/>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.848">
            <gDNA_exon_boundary e_start="73411" e_stop="73476" e_length="66"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.985">
            <gDNA_intron_boundary i_start="73477" i_stop="73666" i_length="190"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="73667" e_stop="73836" e_length="170"/>
          </exon>
          <intron i_serial="2" don_prob="0.456" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73837" i_stop="75972" i_length="2136"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="75973" e_stop="76142" e_length="170"/>
          </exon>
          <intron i_serial="3" don_prob="0.895" acc_prob="0.944">
            <gDNA_intron_boundary i_start="76143" i_stop="76224" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.976">
            <gDNA_exon_boundary e_start="76225" e_stop="76433" e_length="209"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="1.000">
            <gDNA_intron_boundary i_start="76434" i_stop="77568" i_length="1135"/>
          </intron>
          <exon e_serial="5" e_score="0.957">
            <gDNA_exon_boundary e_start="77569" e_stop="77614" e_length="46"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73476"/>
              <exon start="73667" stop="73836"/>
              <exon start="75973" stop="76142"/>
              <exon start="76225" stop="76433"/>
              <exon start="77569" stop="77614"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73411" stop="73476"/>
              <exon start="73667" stop="73836"/>
              <exon start="75973" stop="76142"/>
              <exon start="76225" stop="76266"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76006" stop="76142"/>
              <exon start="76225" stop="76258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E584338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCCTTTCTGCAAAAACACCATACTATAATCATTCTCTCTCAAGAGAAAAAAATCAAATTAAAGT : AGATTATTAGTAATGGGGAAGAAAAAGCAAAAGATTGTGCTACCTCCTGATCTTCCACCGGAAGTTCCTGATGAAGCAGTCGAAGTATCAGATGAAGACGTGCTTTTTGTAAGCGAAAATCGAGAATATACTGGATTCTTGTCGAATTTGGATACGAAGTCAATTAATAA : GCATGTTACTCGTGTTGCCGATGTGAAAGAAGATGAGCTAGAGTCTCTGTATGAAAGGCGATTAAAGAAGAAGTCACTTGATAAAGAAACAGAAAAACAGGGACTAGAGGTTGATCCTGTGGATGCTCTTCCTGTGAAGACATTAGATGGAAAACTTTATTACAGGACAG : TGCCAAAGGCTACACAAAAATCTGAAAACGAAGATAAAGATGAAGCTACTACTAACAACAAAGAGGCTGGTATTGATGCAAGTGTGGTGAGGCTGACTAAAGCAGAGAAGCGTGCCAAATTGAAGAAAATTAGGAAAGAGGCCAAGAAACAGGCAAAAGAGGGGACAGAAGTAGAAGATGTTGAGCAAATACCTCAAGCTGAAGTCTTG : GACGAAGTGAGAAATGATATGACAGCAGAAGAGGCCAATCAAAAAA</gDNA_template>
            <first_frame> L  P  F  C  K  N  T  I  L  *  S  F  S  L  K  R  K  K  S  N  *  S  :  R  L  L  V  M  G  K  K  K  Q  K  I  V  L  P  P  D  L  P  P  E  V  P  D  E  A  V  E  V  S  D  E  D  V  L  F  V  S  E  N  R  E  Y  T  G  F  L  S  N  L  D  T  K  S  I  N  K :   H  V  T  R  V  A  D  V  K  E  D  E  L  E  S  L  Y  E  R  R  L  K  K  K  S  L  D  K  E  T  E  K  Q  G  L  E  V  D  P  V  D  A  L  P  V  K  T  L  D  G  K  L  Y  Y  R  T   : V  P  K  A  T  Q  K  S  E  N  E  D  K  D  E  A  T  T  N  N  K  E  A  G  I  D  A  S  V  V  R  L  T  K  A  E  K  R  A  K  L  K  K  I  R  K  E  A  K  K  Q  A  K  E  G  T  E  V  E  D  V  E  Q  I  P  Q  A  E  V  L  :  D  E  V  R  N  D  M  T  A  E  E  A  N  Q  K  </first_frame>
            <second_frame>  S  L  S  A  K  T  P  Y  Y  N  H  S  L  S  R  E  K  N  Q  I  K  V :   D  Y  *  *  W  G  R  K  S  K  R  L  C  Y  L  L  I  F  H  R  K  F  L  M  K  Q  S  K  Y  Q  M  K  T  C  F  L  *  A  K  I  E  N  I  L  D  S  C  R  I  W  I  R  S  Q  L  I   : S  M  L  L  V  L  P  M  *  K  K  M  S  *  S  L  C  M  K  G  D  *  R  R  S  H  L  I  K  K  Q  K  N  R  D  *  R  L  I  L  W  M  L  F  L  *  R  H  *  M  E  N  F  I  T  G  Q  :  C  Q  R  L  H  K  N  L  K  T  K  I  K  M  K  L  L  L  T  T  K  R  L  V  L  M  Q  V  W  *  G  *  L  K  Q  R  S  V  P  N  *  R  K  L  G  K  R  P  R  N  R  Q  K  R  G  Q  K  *  K  M  L  S  K  Y  L  K  L  K  S  W :   T  K  *  E  M  I  *  Q  Q  K  R  P  I  K  K </second_frame>
            <third_frame>   P  F  L  Q  K  H  H  T  I  I  I  L  S  Q  E  K  K  I  K  L  K   : *  I  I  S  N  G  E  E  K  A  K  D  C  A  T  S  *  S  S  T  G  S  S  *  *  S  S  R  S  I  R  *  R  R  A  F  C  K  R  K  S  R  I  Y  W  I  L  V  E  F  G  Y  E  V  N  *  *  :  A  C  Y  S  C  C  R  C  E  R  R  *  A  R  V  S  V  *  K  A  I  K  E  E  V  T  *  *  R  N  R  K  T  G  T  R  G  *  S  C  G  C  S  S  C  E  D  I  R  W  K  T  L  L  Q  D  S :   A  K  G  Y  T  K  I  *  K  R  R  *  R  *  S  Y  Y  *  Q  Q  R  G  W  Y  *  C  K  C  G  E  A  D  *  S  R  E  A  C  Q  I  E  E  N  *  E  R  G  Q  E  T  G  K  R  G  D  R  S  R  R  C  *  A  N  T  S  S  *  S  L   : G  R  S  E  K  *  Y  D  S  R  R  G  Q  S  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0178P03.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73474" stop="73476"/>
                    <exon start="73667" stop="73836"/>
                    <exon start="75973" stop="76142"/>
                    <exon start="76225" stop="76433"/>
                    <exon start="77569" stop="77613"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRLLVMGKKKQKIVLPPDLPPEVPDEAVEVSDEDVLFVSENREYTGFLSNLDTKSINKHVTRVADVKEDELESLYERRLKKKSLDKETEKQGLEVDPVDALPVKTLDGKLYYRTVPKATQKSENEDKDEATTNNKEAGIDASVVRLTKAEKRAKLKKIRKEAKKQAKEGTEVEDVEQIPQAEVLDEVRNDMTAEEANQK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 158 chains have been computed
$ 
$ memory statistics:
$ 326288 bytes spliced alignments in total
$ 114 spliced alignments have been stored
$ 2862 bytes was the average size of a spliced alignment
$ 19296 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1754 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 168 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:23:07
-->
