<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-11-12 19:19:36"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594060" ref_strand="+" ref_description="SGN-U594060 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147778480|emb|CAN69431.1| (e_value=2e-91) hypothetical; (*ATH) ATMG00710.1 (e_value=1e-17) |; (*SWP) sp|P10978|POLX_TOBAC (e_value=1e-57) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gctttctggtaaggcaagggagaatggaattgctgagaggatgaacagaacattgaatgagcgtgcaaggagtatgaggatacactgtgggctgcccaaaacactttgggcggatgctgtgagcaccgctgcatacttgatcaacaggggaccatcagttcctctagggttcaagattccaaaggaggtgtggacaggaaaagaactcaagtactcacacttgaggacttttggttgcactgcttatgttcatgttgatccagaaaagagagacaagcttgatgctaaggctgtgaagtgttacttcataggatatggttctgatttgtttggttacaggttttgggatgacaagaacagaaagatcctgagacattgtgacgtgacatttgatgagtctgtcctgtacaaggacatagagcagaaggttctagagattacaaagcaagtgggagttgaggttgagttgaagaagagtaaccccagagatgtcaaagcagatactcaaccaactcctactaaagaatctgaagtggagcaagttacacctgagcaggttttaaggagatcatccagatccatcagggcaccagataggtattcaccttcattacactatctattgctgactgatgaagggaaaccaaagtcttttgatgaggccctacaggtgcaggattcgatcaagtgggagcaagtcatggatgatgagatgaggtcacttgagaagaacaacacatgggtgttgactgagctacctgtagggaagagagctttgctgaacaagtgggtgtacagaaatcagactgaaccagatggaaaaaaaaggttcaaggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="7550" stop="6123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7252" g_stop="6422" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="839" r_length="839" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U594060" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7252" e_stop="6422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTCCTGGTAAGGCAAGGCAGAATGAAATTGCTGAGAGGATGAACAAAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACATTTTGGGCGGATGTTGTAAGCACAGTTGCATACTTGATCAATAGGGGACCATCAGTTCCTTGAGGGTTCAAGATTCTAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTACACTGCTTATGTTCATGTTGATCCAAAAAAGAGAGACAAGCTTGATTCCAAGGCTGTGAAGTGTTACTTCATAGGCTATGGTTCTGGTTTGTTTGGTTACAGGTTTTGGGATGAAAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGATTCTAGAGATTACAAAGCAAGTGGGAGTTGA-GTT--G--G-AGAAGAGT-ATCCCATAGATGTCGAAGCAGATACTGAACCAACTCCTACAGAAGAATCTGAAGTGGAGCATGTTACACCCGAGCAGGTGTTAAGGAGATCATCTAGAACCATTAGGGCACCAGACATGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAGGGGGAACCAGAG-CTTTTGATGAGGCCATACAGGTGGAGGATTCGATCAAGTAGGAGCAAGCCATGGATGATGAGATGAGGTCACTTGAGAAGAACGACACATGGGTGTTGACTGAGTTACCTGCAGGGAAGAGAGCTATGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACCAGATGGCAAAAGAAGGTTCAAGGCTT</genome_strand>
        <mrna_strand>GCTTTCTGGTAAGGCAAGGGAGAATGGAATTGCTGAGAGGATGAACAGAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACACTTTGGGCGGATGCTGTGAGCACCGCTGCATACTTGATCAACAGGGGACCATCAGTTCCTCTAGGGTTCAAGATTCCAAAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTGCACTGCTTATGTTCATGTTGATCCAGAAAAGAGAGACAAGCTTGATGCTAAGGCTGTGAAGTGTTACTTCATAGGATATGGTTCTGATTTGTTTGGTTACAGGTTTTGGGATGACAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACATAGAGCAGAAGGTTCTAGAGATTACAAAGCAAGTGGGAGTTGAGGTTGAGTTGAAGAAGAGTAACCCCAGAGATGTCAAAGCAGATACTCAACCAACTCCTACTAAAGAATCTGAAGTGGAGCAAGTTACACCTGAGCAGGTTTTAAGGAGATCATCCAGATCCATCAGGGCACCAGATAGGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAAGGGAAACCAAAGTCTTTTGATGAGGCCCTACAGGTGCAGGATTCGATCAAGTGGGAGCAAGTCATGGATGATGAGATGAGGTCACTTGAGAAGAACAACACATGGGTGTTGACTGAGCTACCTGTAGGGAAGAGAGCTTTGCTGAACAAGTGGGTGTACAGAAATCAGACTGAACCAGATGGAAAAAAAAGGTTCAAGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U578833" ref_strand="+" ref_description="SGN-U578833 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|860903|emb|CAA55812.1| (e_value=1e-21) Sn-1 [Capsicum annuum]; (*ATH) AT5G28010.1 (e_value=3e-13)  Symbol: None | Bet v I allergen family protein, similar to Csf-2 (Cucumis sativus)(GI:5762258)(J Am Soc Hortic Sci 124, 136-139 (1999)); contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family | chr5:10024817-10025386 FORWARD | Al... ; (*SWP) sp|Q9SSK7|MLP34_ARATH (e_value=9e-12) MLP-like protein 34 OS=Arabidopsis thaliana GN=MLP34; ">
      <seq>ggaaatatatcgatgatggaaaggaaaagtttcttaaagaagagatcaaacacattgatcctcagaagaaatcaatcacttgggaagtaatcgaaggagatgtgctagagttgtacaacttcttcattattaccacgtccagtgaacaccagtggactacagtaacatttgaatacgagaagaaaactgaaaatattccagagcctctttcgttcttggattatttcgtcaatgtgatgaaagatatggagggtcatctactcagcaaatagaatgttctgtgtatgtttgtgcttatgtgatgaatgtttggtaatattgacgaggtccagctaacgtataaaataaattaataatgctatatatagtctcttctgtgaatgtaattccagatatggtcaaaacatatatatatatatatatatatgttaagatattagagtatgaatatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="11199" stop="10148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10888" g_stop="10448" g_length="441"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="456" r_length="441" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U578833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U578833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10888" e_stop="10448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTG</genome_strand>
        <mrna_strand>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604259" ref_strand="+" ref_description="SGN-U604259 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205352|gb|AAT38797.2| (e_value=7e-19) Polyprotein,; ">
      <seq>attttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="25885" stop="26763"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26185" g_stop="26463" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="278" r_length="278" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-U604259" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>279</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26185" e_stop="26463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTGGTGTTTGCCACAAAAATGCCAAGAAGGAGTGTTAGACAATTGGCATTTTTTCAGCTTATTATTATTTGTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTTTAGCTAGACTTAGTAAACTTTAGTTGCTCAACTTTCTGAAG</genome_strand>
        <mrna_strand>ATTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAG-TAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567070" ref_strand="+" ref_description="SGN-U567070 Tomato 200607#2 [3 ESTs aligned] ">
      <seq>ttcttttagaattttagtaagttcttttataacacgttatcagcacgagtctctagctaattgagagtgagttttagttttttctttaactcatgttttggttgatctcgatatgagaatcaaggtattatttgcataagatcaggtatgtattttctaaaatattttatgatttagaataaaatagtattcagtcactagcaattatcaggaaccgaagacatatactactattggttgaatatgacatgctatataaaacttattaaatggaagaaggtataaaattttaatagcatgagtttgaatgttattttgattgttttgaaagactcaaagggtgagtcgtgttgtacttcggtctattataccgttggtcaagggtaagacgattgattcaagtttcatcgcaccaaaagggtaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="28270" stop="29270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28565" g_stop="28970" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="425" r_length="405" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-U567070" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28565" e_stop="28970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAG-TTTTTATTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCACGTATGTATTTTCTAAAATATTTTTATGATTTAAAATACAGTAGTATTCAATCACTAACAATTATCAGGAACTAAAGGCATATACAACTATTGGTTGAGTATGACATGTTATATAAAACTTCTGAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTCTGAATATTATTTTGATTGTTTTGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCGCACCAAAAGGGTAAG</genome_strand>
        <mrna_strand>GTT-CTTTTATAACACGTTATCAGCACGAGTCTCTAGCTAATTGAGAGTGAGTTTTAGTTTTTTCTTTAACTCATGTTTTGGTTGATCTCGATATGAGAATCAAGGTATTATTTGCATAAGATCAGGTATGTATTTTCTAAAATA-TTTTATGATTTAGAATAAAATAGTATTCAGTCACTAGCAATTATCAGGAACCGAAGACATATACTACTATTGGTTGAATATGACATGCTATATAAAACTTATTAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTTTGAATGTTATTTTGATTGTTTTGAAAGACTCAAAGGGTGAGTCGTGTTGTACTTCGGTCTATTATACCGTTGGTCAAGGGTAAGACGATTGATTCAAGTTTCATCGCACCAAAAGGGTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586115" ref_strand="+" ref_description="SGN-U586115 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|147852634|emb|CAN83798.1| (e_value=5e-33) hypothetical; (*ATH) ATMG00820.1 (e_value=6e-27) | Symbol: ORF170 | hypothetical protein | chrM:228573-229085 REVERSE | Aliases: ORF170; (*SWP) sp|P92520|M820_ARATH (e_value=5e-26) Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820; ">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatattaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatcccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="50340" stop="51577"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50640" g_stop="51278" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-U586115" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>639</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50640" e_stop="51278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCAAGCCCGATCCGTTTTGGGTCCTTCCCGTCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCTGTGCCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAGATGACGAGTTTAAGGCTTTGGCTAATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGCAAATGGGTGTA-AAAATTAAACACAATGCAGATGACAGTATTTCTAGGTACAAGGCTCGTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATAAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGTCGCAACCACCGGGCTATGTTGATCCCCG</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATATTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCGTAAC-ATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U583282" ref_strand="+" ref_description="SGN-U583282 Tomato 200607#2 [11 ESTs aligned] (*GB) gi|147854674|emb|CAN80244.1| (e_value=3e-49) hypothetical; (*ATH) AT5G44800.1 (e_value=2e-19)  Symbol: None | chromodomain-helicase-DNA-binding family protein / CHD family protein, similar to chromatin remodeling factor CHD3 (PICKLE) (Arabidopsis thaliana) GI:6478518; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF001... ; ">
      <seq>gctctctctctccttccctttaatcgcacagtactctagagaccagacaagtgagtacaactacactctctctcaaactgagctttcttgtcggaaaattttcacgcttcccttatcgccggcgtctttctccgtttccggccgcatatatttggtgtggctttagattcaattcgacgactttgcaattcatgttgatttaagtttgctgtggaagtttcagtacctctttgtatgaccattcgaaagcttaatgattcggaaaaaagtgttcttgacttacaagcgaaagaggctaccaggttctgatctttttttggaaaatgggactcataatacacctactgagtgtatgaaatcaaaagctgtggcccctttgctggaggaagaggagaagtatgacaaccctagcttcaaggatggaaagaaagactttgaggataattctgaagaaaatcagtcctcaaagggttccaaagggcctctctctgaaggagaaccaaggaattcacagaagagattatgttcttgcattatttcaggcagtatatgtgatagtaaatgcacccagaagttttctctttccctgttgacaggattgaattcttcgagagaacaggatttggtctccccaagttctggtggtgatgagaggggatgcgatcttaaggattctgattcctctgatttggttaaactgagtctggaagaagttgccacaccaaaagacatctctctgatcccctctgtaaatgcagttagtacaagtaaattgtcttccagtctgattacttttcagcgaagagctaagcgggacaaggatgcaggccgggcatatgccaagggcaatcttgaagctgaagatgttgcttgcttatcagttgaaaatactgcatgtcttgtcgctcctcatgactctgataaatcagttgctaagagttgctcagtggatctttcagcagattttaagcatccagagacaaccaacggaggtgagaattatcaatgtgcttgtgctggatcacctgcacagatgaagatattgttagatgttaatgaacagcctatcttagtgaaggaagctcagccaatcgatgaagtagctgatccaaattctggagtaggcttctctggtttggacgacggtgttgcttcagatactttcaagaagtcatcatttcatagccctaaggacccttcttttgatggtttgtccagaactgaagtgccaatatcgtctcccttagaggttgcaagtaacactggttcccaagctttagatatatctataccttgtgatagtgatgacacaatggactgcaataggtcggaacaagcatctgatgaacgcctcatcccaacagcactggaagttcagcagaaccctccttgcttcttgaatggaaataattcgacggttttacatagggtgccttcggacaaaagtttggaattacttgacatcaagcccgagaagataactccaattcatgcagagttgcctgaagctggttgcttatctgaaaaagcaatggctgatagtggtgaaagcagttcttcgaaaaatgatttactgcagcttttgtcggaagatagaacctacaactttttcccattagcaagcctgcaggaaaatgagagtgctcatgttaattctaaagaaggaaaagcttcctcattagaagagaagagacattgtgcatttactgtagcagaatcctcagattttcttggtttgtcactgccaagtcaagctttagcttcgagatccttacagttggctgacatatggaatcaaccaagcgaatccattcaaggagcagcttctcaggtttctgttgatgcatcaatacttcatcgacatcaaatgatcctggacaacattcttaacagaggaagatctcaaaacggaaacaagaggagatttgcagaaaaattagggactccaaacatgtggtcagaagaggagctagattctctttggattggtgtgaggcggcatggaagaggtaactgggatgtgatgttgagggatccaaggctgcgctttttttcgtggaggacgccaacagacttggcagaacagtggatggaggaacagtcgaaacttttacatggaaaatccatttcccctgtgagacagttacataaagctgatgtttcatcccatggtatggatgatgttaaactttcacttgggcatgcacattcccagtcaggagacaacatccggagccaaataccatttcattttccagatgttcaaaatacttcgcaaaaattacttcacctggctacaacaaatgtagggaccttagattctctctgtctcaggggaaaccgcaaaagagctaagttcaaccaatccgagaactctgcaggttcaggtgtggaatgttcattcagttctcgaattatgagcagagtgtctgaagtaggtaatttgcctcactggctcaaggaagtggttgcaatcccacccaggcctcctggatttgccccagattcttcatggtttatccatccatggattggtccaccgttttctgaacctaagcgagctcactgtgaatcaaggaacagattgagcgacttgtacactacaccaaaaactgagctgaataatggtaatgctgattgtgctcatctccctataagagaagggaagcaacattgtaagtcagaagcagataaaaaagttgagctgattgtcatcaatagcgacgcctcatcagaggagacaatatcagatgattgtaatgtaaggcattagcttaagttgggatttcatagttcaacaatggttaaacttgtataaaagtagtttaagtatctcagctatttctcgagggtgagattagttgaatcaggtagtttttattttcccaaattcttattttagctatttgctggtaagctatgttgtaaactcactttaggtcctaattagggattggatcaaagccaagcaaatccaaactccttcataaactcaaggctggtaagctttctacctatggaaaatgtgataaaatcccaggccgataatcattatagtgagagtttggcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="+" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="63947" stop="71981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64246" g_stop="64389" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64390" i_stop="65243" i_length="854">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65244" g_stop="65538" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="439" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65539" i_stop="67516" i_length="1978">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67517" g_stop="68056" g_length="540"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="979" r_length="540" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68057" i_stop="69215" i_length="1159">
            <donor d_prob="0.677" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69216" g_stop="69277" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="980" r_stop="1041" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69278" i_stop="69405" i_length="128">
            <donor d_prob="0.973" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69406" g_stop="69662" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="1042" r_stop="1298" r_length="257" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69663" i_stop="69781" i_length="119">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69782" g_stop="70062" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1299" r_stop="1579" r_length="281" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="70063" i_stop="70187" i_length="125">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="70188" g_stop="71681" g_length="1494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1580" r_stop="3073" r_length="1494" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="+" ref_id="SGN-U583282" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>3073</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U583282" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64246" e_stop="64389"/>
          <exon e_start="65244" e_stop="65538"/>
          <exon e_start="67517" e_stop="68056"/>
          <exon e_start="69216" e_stop="69277"/>
          <exon e_start="69406" e_stop="69662"/>
          <exon e_start="69782" e_stop="70062"/>
          <exon e_start="70188" e_stop="71681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCTCTCTCTCCTTCCCTTTAATCGCACAGTACTCTAGAGACCAGACAAGTGAGTACAACTACACTCTCTCTCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCGGTAAGCATAAATTCTTTCTTCCTTTTTCAACTTTCTCTTCTTTTTGTTAGAAAGATTTCATATTGTTATTTGCTTTGTGTCTGTAGACTGTAGAGTACTCATTATCTGTTATTTTTTCCTCTTAATTTTTCAGTTATAAAAGGGGAAAATTCCATTTTAATAACTTTATTTGCTGATAACTGTACTATTTCTCCTTTTTTTTTTTTTTACAAAAAATCTTGGATGAAGTGCATGTTGGTACTTCAAATTTCTTGGTGCTCTATGTTGAGCTAAGGTGATTTTTTTTTGTTTTTCTTTTGTGTTATTTTAAAGGTTTTGGTTTTATAAGTTATGGATTCTGTAAACTTTTACTCTTGCTTATTTAGGAATTCCTATAATCATCATTGTTGAATTGGAAGAGATAACCTTATACATATTAACCCTGAATATATACTCCATCCTTTCCATTCCTTATGATGTAGTTTGACCTACTCTTTGGTTTTTAAAATAAACAAAGATTTTTGAAATTTGTGGTAAAAAAATGAGGTTTATGTGACTATAACTCATTTCATTAGGGTAAAATGTGTATTTAGAAGTTAAATTGTTGTTAAATGTAAAAATGTGTCTTTTTTTTGGACCGACTAGAAAGGGAAGTGAGTCATATAAATTAGGATAGAGGGAGCAGTTATTTGCATGGGTTTAGGTTGAAGAGTAAGTGTTGCTTATACTTTTTCTCACGTTGTTTGCCCAAGATTGTTAATAGCACACAAAGGTAAAATTCAATAACGATTTCATGATGAGGTTAAAAGTGGTTCGAAAAATGTTGAGCTCACATGATGTCATTTGATGTAGTTTCTTTTTTCTGATTTTTGCAGCATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACTGAGTGTATGAAATCAAAAGCTGTGGCCCCTTTGCTGGAGGAAGAGGAGAAGTATGACAACCCTAGCTTCAAGGATGGAAAGAAAGACTTTGAGGTGAGATCTTTGATATACCGTTTGGTTTAGGAAACCAAACATTATATCGGCGGCATGAGGTCTTTGTTGTGCTTGTGATTGAGGTGTAGTAGTAATAGTAGTAGTTGTTATATGAGGTCCTTTCTTGTGGCTTGATTTTCTTTGGATAATCATCTTCTAATTTATGTCGTCACATTTGTTCAGGAAACTGTGGCAACTATTCTGAATTAAGTCGTTATCTACATATGGATGATCATCTCCTAGATTTCAACTAAGTAGTGATTCTTCATAATCAGTAAACACAGATGTGTAATGTGGTGCATGATCCTGGCACTTGTATCTCTTACTTACAAACGTACATTATTCAAATGCTAATTATATGATTATTAGCTACTGTCTTTAATGGCCGTCCAATCTGTGCTTCTCTTTCTCTCTCTCATTGTTTTGCTTTGTGGAAATTGTTTACTTGCAATTGGAATGACAACTAGGATGGAGAGTATTTTAGGGTAAATTCAAGAGTTCATGGTGTTCTTCTTGTGATGAATTCCTTAAGTTGTATATACTGAAACATGTCTGCTTCTGCTTACATAATAAAACTGGTAGGGTGGGTGCACACTGACTGAAACAATAGTGACCAAAGAACTCCTTATGACAGGGTGTGGGTTTAGAAATTGGCGTGGGAAGTGTTAGAGCTTAGACTTGGGTAGAGTTTTCATAAGTAGAACTTTATTTTTCACTTTCTGTCAGAAAACTAAGTTTTTTATAGCTCGGAAAGATATTGTACATGGTCCAAAGTTGATGTAGTGGTTGAAGCATGGGAGTGACAATTCAGGGATCCCAAGGTCAAATCCCAGCTACAACCCTTGATGTGAGCTCATTTTCTCTGAACGTAGCGAGCAGGATTACTTTCGCGATCTTGTGCTAGTGGATTCAACAAGTTGCCCAGTTGAATGGTTGAGGAGCGTGCAAGTTGGTCCAGACATATCAATTAAGAAAAATCTCTCTTTTGTACGAGATAAGCAATGACTTGTTGAGTTTATAAGCTACTACTAGATCAAACAAACCGTTGCTGAATTATGTTGGTTGAACTTTTTAAATAGGGTGAATATAATCTTCTCCCTCTTTCTTCCTACTATCAAGTTAATTGTGAAGATGCAGTCATCCCCTTTATTTTCTGAGTTCCTAGTATTTTTTTTTTTGATGACAGTTCCTAGTATTTAACTTGTAAAACTATTGGAAATGCTTTCTTCAATCGTGACTGATCTGTTAACACAAGACAACCTTGTTAATCTGAACGTAAATCAATTTAACACAAGCATTCACACAACTTGTCAATTTTTTTTCTAGGCCTTTGTTACTAGTGTGCTATCCATTTTCATCGGTCTTCTCACATCTACACCCACCTTCAAAAATCCTGCTGCATCACTCATCTGATCTCTATACTTCTTTCTTTTCCTGCTGCTTCGTTGTAGCCTAGCTGGACCACCATAATCCCTTTAAATTTCTTCAAGTTACCCTATGCACATTTCCTGCTTCCTCTATCTTGCATTATAAAGCAAGAGAAAAGAAAGATAAAGAGTAGAGAAAAATATAGAACTGAACAAGCGTGCACACATCTTATGCAGAAACAACTGATTGGACGTAGTTGCATTTCAACATTCTCTTTTAAGCTTACTTCTGTATTTTTAAGGATGAAATAGTGCGCACCATTGAAAAATTATTTGTATCAACTTGCACATTTAATTGCCTGTTCCTTGTCAAAATCAAGATAGCAGATGGGTAATTGAGTTATTGAAATTATTCTATACTAGTATGATGCGTTCAGGATTTTTATCATGACTTTTTGGACTGTGACTGTTAGATAGTCAAGCTTAGCCTGAGAGATGGATTTGAGCTTCAATGTGACTTTTGGTGGCATTGTGATTATGATACTGGTGGTTAGAAAAGATGTCTTACATGTAAACTTCCCAAGTTGCTTAATTGCCATTCATCTTTGCAGGATAATTCTGAAGAAAATCAGTCCTCAAAGGGTTCCAAAGGGCCTCTCTCTGAAGGAGAACCAAGGAATTCACAGAAGAGATTATGTTCTTGCATTATTTCAGGCAGTATATGTGATAGTAAATGCACCCAGAAGTTTTCTCTTTCCCTGTTGACAGGATTGAATTCTTCGAGAGAACAGGATTTGGTCTCCCCAAGTTCTGGTGGTGATGAGAGGGGATGCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAGGTTAATCCTTATCCTAGACAAGCCACTTCATTGCTAGTAATGAAGAGAACTTTTGTCACTTGATTTTTAGATGATATTAGAAAGTGTGCCATATTAACCTTATTCATAATAATTCATAAACCATCTGAGGCATATCTAACCAGTTTTCGGAGATCAATGCTGATTATTCATATTCTTTTCTAATTTATTTTATAGTTATTTTCATTCATAAACTAGAAGTGCAAAAATGGCAGAAACAGAATACAAATAGATTATGCATTTGTAGGATAGCCATCGTATTTCTCTAGATTCTTACTTTGATTACATGAGACAAATATCTATACTCATCCCATTTTTCCTTCGACCGTTATTAATATTATATTCTGTGTTTCTTGTACAAGTTCTTAGTAACCACGATCATGCAGATTAAAGCTAAATCTTTAGACTCTGCTGACTTTTGCAGTATGGGGTATTAAATTGATGTCTGGATTTTTTTTTATGAGGGAACTTAGACTAATGTTTCTTGTTTTTCATCTAATTTCTTTGTTTTATTTCTATGTATGTTCGGATTTAGTTTCAAGAGATATTATTTTGGGATGATCTGAGATTTTTTTTTTTTTTAAATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAACAACTGTGCAAAAACAAGTCATTCTGTTTCTATGTATGTTTGGTTTTAGTTTTAGGAGATATTATTTTGGGATGTTCTGAGAGTTTGTTTTGTTTTTATTTTCAGAAACAGAAAATCAAGAATATTTGTATAAGAAAACAAAATAACTGTGCAAAAACAAAACATTCTGTTTCTCTGTCCAGACAAGGCTCAACTAAAGTATAGTTTCGAATGGATTATGTGAATTTACTTGCTTCCCTATAACTTCAGCTACTAGCCTACAGGTTCTGTAATTTGAGAGACAAATTCACTTTGCATGAGACTTTTTTTTCTGCATCCTACTTGAACTGGTTTGCTTGGTTTTTCTCCTTTGACATGTTAAGCTGTGTGAAGGCATTGATAAATCAGGTTGGTTGAACCTGCTTGCCGCTCAGTTCGTCTTCTGTCCTAAACACCAGATGAAGATTACATGCTAATTATTCTCTAGAAAATCATGTGATTCCAATGTTAACCAAGTTTTATTTTGTTATAGACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGATGTAAGCTTAACTATCGTCTACTCTTGCCTTGTAGTGAATCTAGGGGACAGGTTTAATGAAAGATTCTTGTCTGGAAATGTAACCCAGTTGAAGATATTCAATTTTAATTCTTGGATTTGCTTGTACAGATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGAAGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATATCTATACCTTGTGGTATGTATTTTTATTTGGTTTTATCCTCCTGGATTTAAGATATATTGTTTTTATAGGGACTCATGTTCATGAATTTTATGTGTCTCAGTATGCTTCTGTTTTTAAATTACCATGTTCAGATAGTGATGACACAATGGACTGCAATAGGTCGGAACAAGCATCTGATGAACGCCTCATCCCAACAGCACTGGAAGTTCAGCAGAACCCTCCTTGCTTCTTGAATGGAAATAATTCGACGGTTTTACATAGGGTGCCTTCGGACAAAAGTTTGGAATTACTTGACATCAAGCCCGAGAAGATAACTCCAATTCATGCAGAGTTGCCTGAAGCTGGTTGCTTATCTGAAAAAGCAATGGCTGATAGTGGTGAAAGCAGTTCTTCGAAAAATGATTTACTGCAGGTATGTGCAGTGTTAAAGAAACTGTTGCTCATCTCAATCTCTACCAATTTTCTGTGATGCTGTGCACTTTCAATTAAGTGAATGTTTTACGTATGATTGAGATGCATTAAATTGTTTGCTTTCAGCTTTTGTCGGAAGATAGAACCTACAACTTTTTCCCATTAGCAAGCCTGCAGGAAAATGAGAGTGCTCATGTTAATTCTAAAGAAGGAAAAGCTTCCTCATTAGAAGAGAAGAGACATTGTGCATTTACTGTAGCAGAATCCTCAGATTTTCTTGGTTTGTCACTGCCAAGTCAAGCTTTAGCTTCGAGATCCTTACAGTTGGCTGACATATGGAATCAACCAAGCGAATCCATTCAAGGAGCAGCTTCTCAGGTTTCTGTTGATGCATCAATACTTCATCGACATCAAATGATCCTGGACAACATTCTTAACAGAGGAAGATCTCAAAACGGAAACAAGAGGAGATTTGCAGAAAAATTAGGGACTCCAAACATGTGGTCAGAAGAGGAGCTAGATTCTCTTTGGATTGGTGTGAGGCGGCATGGAAGAGGTAACTGGGATGTGATGTTGAGGGATCCAAGGCTGCGCTTTTTTTCGTGGAGGACGCCAACAGACTTGGCAGAACAGTGGATGGAGGAACAGTCGAAACTTTTACATGGAAAATCCATTTCCCCTGTGAGACAGTTACATAAAGCTGATGTTTCATCCCATGGTATGGATGATGTTAAACTTTCACTTGGGCATGCACATTCCCAGTCAGGAGACAACATCCGGAGCCAAATACCATTTCATTTTCCAGATGTTCAAAATACTTCGCAAAAATTACTTCACCTGGCTACAACAAATGTAGGGACCTTAGATTCTCTCTGTCTCAGGGGAAACCGCAAAAGAGCTAAGTTCAACCAATCCGAGAACTCTGCAGGTTCAGGTGTTGAATGTTCATTCAGTTCTCGAATTATGAGCAGAGTGTCTGAAGTAGGTAATTTGCCTCACTGGCTCAAGGAAGTGGTTGCAATCCCACCCAGGCCTCCTGGATTTGCCCCAGATTCTTCATGGTTTATCCATCCATGGATTGGTCCACCGTTTTCTGAACCTAAGCGAGCTCACTGTGAATCAAGGAACAGATTGAGCGACTTGTACACTACACCAAAAACTGAGCTGAATAATGGTAATGCTGATTGTGCTCATCTCCCTATAAGAGAAGGGAAGCAACATTGTAAGTCAGAAGCAGATAAAAAAGTTGAGCTGATTGTCATCAATAGCGACGCCTCATCAGAGGAGACAATATCAGATGATTGTAATGTAAGGCATTAGCTTAAGTTGGGATTTCATAGTTCAACAATGGTTAAACTTGTATAAAAGTAGTTTAAGTATCTCAGCTATTTCTCGAGGGTGAGATTAGTTGAATCAGGTAGTTTTTATTTTCCCAAATTCTTATTTTAGCTATTTGCTGGTAAGCTATGTTGTAAACTCACTTTAGGTCCTAATTAGGGATTGGATCAAAGCCAAGCAAATCCAAACTCCTTCATAAACTCAAGGCTGGTAAGCTTTCTACCTATGGAAAATGTGATAAAATCCCAGGCCGATAATCATTATAGTGAGAGTTTGGCATGA</genome_strand>
        <mrna_strand>GCTCTCTCTCTCCTTCCCTTTAATCGCACAGTACTCTAGAGACCAGACAAGTGAGTACAACTACACTCTCTCTCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACTGAGTGTATGAAATCAAAAGCTGTGGCCCCTTTGCTGGAGGAAGAGGAGAAGTATGACAACCCTAGCTTCAAGGATGGAAAGAAAGACTTTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATTCTGAAGAAAATCAGTCCTCAAAGGGTTCCAAAGGGCCTCTCTCTGAAGGAGAACCAAGGAATTCACAGAAGAGATTATGTTCTTGCATTATTTCAGGCAGTATATGTGATAGTAAATGCACCCAGAAGTTTTCTCTTTCCCTGTTGACAGGATTGAATTCTTCGAGAGAACAGGATTTGGTCTCCCCAAGTTCTGGTGGTGATGAGAGGGGATGCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGAT................................................................................................................................ATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGAAGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATATCTATACCTTGTG.......................................................................................................................ATAGTGATGACACAATGGACTGCAATAGGTCGGAACAAGCATCTGATGAACGCCTCATCCCAACAGCACTGGAAGTTCAGCAGAACCCTCCTTGCTTCTTGAATGGAAATAATTCGACGGTTTTACATAGGGTGCCTTCGGACAAAAGTTTGGAATTACTTGACATCAAGCCCGAGAAGATAACTCCAATTCATGCAGAGTTGCCTGAAGCTGGTTGCTTATCTGAAAAAGCAATGGCTGATAGTGGTGAAAGCAGTTCTTCGAAAAATGATTTACTGCAG.............................................................................................................................CTTTTGTCGGAAGATAGAACCTACAACTTTTTCCCATTAGCAAGCCTGCAGGAAAATGAGAGTGCTCATGTTAATTCTAAAGAAGGAAAAGCTTCCTCATTAGAAGAGAAGAGACATTGTGCATTTACTGTAGCAGAATCCTCAGATTTTCTTGGTTTGTCACTGCCAAGTCAAGCTTTAGCTTCGAGATCCTTACAGTTGGCTGACATATGGAATCAACCAAGCGAATCCATTCAAGGAGCAGCTTCTCAGGTTTCTGTTGATGCATCAATACTTCATCGACATCAAATGATCCTGGACAACATTCTTAACAGAGGAAGATCTCAAAACGGAAACAAGAGGAGATTTGCAGAAAAATTAGGGACTCCAAACATGTGGTCAGAAGAGGAGCTAGATTCTCTTTGGATTGGTGTGAGGCGGCATGGAAGAGGTAACTGGGATGTGATGTTGAGGGATCCAAGGCTGCGCTTTTTTTCGTGGAGGACGCCAACAGACTTGGCAGAACAGTGGATGGAGGAACAGTCGAAACTTTTACATGGAAAATCCATTTCCCCTGTGAGACAGTTACATAAAGCTGATGTTTCATCCCATGGTATGGATGATGTTAAACTTTCACTTGGGCATGCACATTCCCAGTCAGGAGACAACATCCGGAGCCAAATACCATTTCATTTTCCAGATGTTCAAAATACTTCGCAAAAATTACTTCACCTGGCTACAACAAATGTAGGGACCTTAGATTCTCTCTGTCTCAGGGGAAACCGCAAAAGAGCTAAGTTCAACCAATCCGAGAACTCTGCAGGTTCAGGTGTGGAATGTTCATTCAGTTCTCGAATTATGAGCAGAGTGTCTGAAGTAGGTAATTTGCCTCACTGGCTCAAGGAAGTGGTTGCAATCCCACCCAGGCCTCCTGGATTTGCCCCAGATTCTTCATGGTTTATCCATCCATGGATTGGTCCACCGTTTTCTGAACCTAAGCGAGCTCACTGTGAATCAAGGAACAGATTGAGCGACTTGTACACTACACCAAAAACTGAGCTGAATAATGGTAATGCTGATTGTGCTCATCTCCCTATAAGAGAAGGGAAGCAACATTGTAAGTCAGAAGCAGATAAAAAAGTTGAGCTGATTGTCATCAATAGCGACGCCTCATCAGAGGAGACAATATCAGATGATTGTAATGTAAGGCATTAGCTTAAGTTGGGATTTCATAGTTCAACAATGGTTAAACTTGTATAAAAGTAGTTTAAGTATCTCAGCTATTTCTCGAGGGTGAGATTAGTTGAATCAGGTAGTTTTTATTTTCCCAAATTCTTATTTTAGCTATTTGCTGGTAAGCTATGTTGTAAACTCACTTTAGGTCCTAATTAGGGATTGGATCAAAGCCAAGCAAATCCAAACTCCTTCATAAACTCAAGGCTGGTAAGCTTTCTACCTATGGAAAATGTGATAAAATCCCAGGCCGATAATCATTATAGTGAGAGTTTGGCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598692" ref_strand="+" ref_description="SGN-U598692 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>ggaaggtgcaaataaccgggaaaatttttttcggttgactcagtcatttcattttttcatgtttgacccgattttttttcccgtaaatgccttgaatcaccctatttaaaccgttttttcgccatttaaggcgttatccccagtttttagtgaaatctttcccactgacgtatcatttggtccgcccaaaacaggttggccagcgtgattaacatcgccagttggttatcgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="117664" stop="116830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117364" g_stop="117130" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U598692" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117364" e_stop="117130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT</genome_strand>
        <mrna_strand>GGAAGGTGCAAATAACCGGGAAAATTTTTTTCGGTTGACTCAGTCATTTCATTTTTTCATGTTTGACCCGATTTTTTTTCCCGTAAATGCCTTGAATCACCCTATTTAAACCGTTTTTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAAATCTTTCCCACTGACGTATCATTTGGTCCGCCCAAAACAGGTTGGCCAGCGTGATTAACATCGCCAGTTGGTTATCGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582381" ref_strand="+" ref_description="SGN-U582381 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>tatcgcaggaaagaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="125718" stop="124875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="125428" g_stop="125175" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U582381" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>254</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="125428" e_stop="125175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCACCAAAAAGAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCAAAGAGGAAAATAATCTATGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGATGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGTAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGGTTTCCACAT</genome_strand>
        <mrna_strand>TAT-CGCAGGAAAGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602841" ref_strand="+" ref_description="SGN-U602841 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|13540823|gb|AAK29467.1| (e_value=3e-11) polyprotein-like [Lycopersicon chilense]; (*SWP) sp|P10978|POLX_TOBAC (e_value=6e-11) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>aaagccatagtgctcctaaactcgttgccatcttcctacgatactttatcaacaaccattttacatggtaaggattctattgagttgaaggatgtcacatcagcccttttgcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="129586" stop="128871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129286" g_stop="129171" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U602841" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>116</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129286" e_stop="129171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCCACACTGCTCCTAAACTCGCTGCCATCTTTTTACGATACTTTAGCAACAACCATTTTACATGGTAAGGACTCTATTGAGTTGAAGGATGTCACATCAGCCCTTTTTCTTAA</genome_strand>
        <mrna_strand>AAAGCCATAGTGCTCCTAAACTCGTTGCCATCTTCCTACGATACTTTATCAACAACCATTTTACATGGTAAGGATTCTATTGAGTTGAAGGATGTCACATCAGCCCTTTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U582381" ref_strand="+" ref_description="SGN-U582381 Tomato 200607#2 [4 ESTs aligned] ">
      <seq>tatcgcaggaaagaattacaaaagagagaaaagaagagtgagacatcacagaggaaaataatctctaaggaaaaatagagagtgtgagcgatattgtagtgagatggaaaaatcaaaagagtgttatttcttttgaatgtgtagtgatctttagagttttactcaaacatacaagtgtaaaatccttactatagtgatattcgttgcttctcttgggtcgtggtttttctcttatttaggagggtttccacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="130456" stop="129613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130166" g_stop="129915" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U582381" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>252</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U582381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130166" e_stop="129915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCACCAAAAAGAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTAATATAGTGATATTCGTTCCTCCTCTCGGGTCGTGGGTTTTTCCTTATTTAGGAGGGTTTCCAC</genome_strand>
        <mrna_strand>TAT-CGCAGGAAAGAATTACAAAAGAGAGAAAAGAAGAGTGAGACATCACAGAGGAAAATAATCTCTAAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGATGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGATCTTTAGAGTTTTACTCAAACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTTCTCTTGGGTCGTGGTTTTTCTCTTATTTAGGAGGGTTTCCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565100" ref_strand="+" ref_description="SGN-U565100 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>agcagaagagttcagataacgaagccttaccgaataagaatgaggatgagagcagtgaggatgatcaagaaaatgttcattacaataaaaaaattgacattaataaaaatgttttcgacagtgatgaggatgatggagcaagttctgattacggatacggaagtacatcaggatcttcagagaatgagaaagaagacataagtcttgaacctggaggagggataccgacaaaatctgtcaaatggagttcggaatcaaaacgtaaaagcaagataaagtcatcctctcgagccatactctcaacctcaagacgtaaaagcaaggtaaaacgctctgaaagtatcatctcaaacgacgatactgaaaagaaggacacattcaatttaaaagacaataacaatcatcgacaacaaaagaacgccaagtccaagactgtaagttttagtggtttttcgagtcagagcagcgatgatgcagaatcagacggtgaaaatgatatcggttcaaatcaatcaagacatgtacaatttagatcatgaaaccatacacttgtgttaccaaggcacctctaaggtttctaaataagagtacacagaggctctttcataactatggatcttatttatattttttggtatccttcatgagtagtactctttggatatctggtattgtcatgattcaatatttgtttcttttagagaaagaaatacaacaacaaaaaggggaaattacattgaaataatcttttcgttatctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="132471" stop="131111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132171" g_stop="131411" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U565100" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132171" e_stop="131411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAGAAGAGTTCAGATAACGAAGCCTTATCGAATAAGAATGAGGATGAGAGCAGTGAGGATGATCAAGACAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATCAGTCTTGAACCTGGAGGAGGGATACCAACAAAATTTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACGCTCAACTTCAAGACGTAAAAGCAAGGTAAAACGGTCTGAAAGTATTATCTCAAACGACGATACTG--AA-AAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAATGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGTGATGATGCAGAATCAGACGGTGAAAATGATATCGGTTCAAATCAATCAAGACATGTACAATTTAGATCATGAAACCATACACTTGTGTTACCATGGCACCTCTAAGGTTTCTAAATAAGAGTACACAGAGTCTCTTTCATAACTATGGATCTTATATATATTTTTTGGTATCCTTCATGAGTAGTACTCTTTGGATATCTGGTATTGTCATGATTCAATATTTGTTTCTTTTAAAGAAATAAATACAACAACAAAAAGGGGAAATTACATTGAAATCAATCTTTTCGTTATCTATTT</genome_strand>
        <mrna_strand>AGCAGAAGAGTTCAGATAACGAAGCCTTACCGAATAAGAATGAGGATGAGAGCAGTGAGGATGATCAAGAAAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATAAGTCTTGAACCTGGAGGAGGGATACCGACAAAATCTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACTCTCAACCTCAAGACGTAAAAGCAAGGTAAAACGCTCTGAAAGTATCATCTCAAACGACGATACTGAAAAGAAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAACGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGCGATGATGCAGAATCAGACGGTGAAAATGATATCGGTTCAAATCAATCAAGACATGTACAATTTAGATCATGAAACCATACACTTGTGTTACCAAGGCACCTCTAAGGTTTCTAAATAAGAGTACACAGAGGCTCTTTCATAACTATGGATCTTATTTATATTTTTTGGTATCCTTCATGAGTAGTACTCTTTGGATATCTGGTATTGTCATGATTCAATATTTGTTTCTTTTAGAGAAAGAAATACAACAACAAAAAGGGGAAATTACATTGAAAT-AATCTTTTCGTTATCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U573098" ref_strand="+" ref_description="SGN-U573098 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157353594|emb|CAO46111.1| (e_value=5e-52) unnamed; (*ATH) AT5G18610.1 (e_value=1e-51) | Symbol: None | protein kinase family protein, contains eukaryotic protein kinase domain, PROSITE:PS00107 | chr5:6192738-6195373 FORWARD | Aliases: T28N17.90, T28N17_90; (*SWP) sp|Q9FE20|PBS1_ARATH (e_value=8e-46) Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1; ">
      <seq>ggtttttcaatgtgaacatttcatgcatgacactactatttattcaaaggatataaacatcttttttttcccctagctccattcttcaaacataaggtgaaaatatatatcatatattttcttttctaaatatgaatatgaatgggctaatgcatcaatgatatgagttgcctcccctgtttccagtctaagaaaacaaacgagccaccggtacaggacaagcttgtcccggttgctcgccctgctaatgatcatccttcctcctcaccacattttgaaaaaaactacaaagcatcatgtgagaatggtaataataacaacatttgcgctgatcaaggtagctctcctgttgaaaatggagatagcagcaacgcgaaaactttcacattccgtgaactagcaagcgcaacaaagaacttccgacaagaatgcctaataggggaaggtggattcggaagagtctttaagggaacacttcaaggaggagaggttgtggcagtaaagcaactagacaggacaggaacacaaggaaacaaggactttcaagttgaagtcttattgctaagcctacttaaccaccaaaatcttgttaatctcattggatactgtgctgatggagatcaaagaattttagtctatgaatacagaccaatgggcagtcttgctgatcatctaattgatattaaggaggatcaaaagccattagattggcaaaacagaatgaagatagcctcaggtgcagcagaaggacttgagtatctacacgaaaaggccaacccgccaatcatttatcgtgatctcagaactaccatatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0198A03-5VEjr/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0198A03.2" temp_strand="-" temp_description="C04HBa0198A03.2  AC215417.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0198A03.2 sequenced_by:kribb upload_account_name:korea">
        <position start="134186" stop="132456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133887" g_stop="133612" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="133611" i_stop="133506" i_length="106">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133505" g_stop="133294" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="489" r_length="212" r_score="0.972"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="133293" i_stop="133167" i_length="127">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133166" g_stop="132977" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="679" r_length="190" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="132976" i_stop="132895" i_length="82">
            <donor d_prob="0.952" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="132894" g_stop="132756" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="817" r_length="138" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0198A03.2" gen_strand="-" ref_id="SGN-U573098" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0198A03.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U573098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133887" e_stop="133612"/>
          <exon e_start="133505" e_stop="133294"/>
          <exon e_start="133166" e_stop="132977"/>
          <exon e_start="132894" e_stop="132756"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACAT-TTTTTTTCCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATCAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCCTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTGGTATCTTCCTCTTTTCTTTTTTTTTTTAAAAACATAACTTACAAATTACTTTGTGTACTTTTCCTAACACATGATAATGTTTGCTTTTTTCTTGTATGTTTCACAGAAAACAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACAATCGCACTGATCACGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAGCTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAGGTAACTAATTTTACTCTAATACTAGTAATCTATCTATATATATTATCTTTGTTTTTCGTCACCATATGATATAACTCACTTGGACACCCTTAATAAAATTTCTGGCTCTGCCACTGCTGATAAATAGGTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATGTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATTGGTAAATGCAGCTCATGATATATATATATAGTTGTTACACCTATGCTTTCTCAAATATTACTTAAATTGATTGTATTATTCAGATATTAAGGAGGATCAAAAGCCATTAGATTGGCAAAACAGAATGAAGATAGCCTCTGGTGCAGCAGAAGGACTTGAGTATCTACACGAAAAGGCCAACCCGCCAATCATTTATCGTGATCTCAGAACTACCAATATACT</genome_strand>
        <mrna_strand>GGTTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACATCTTTTTTTTCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATGAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCTTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTG..........................................................................................................AAAAAAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACATTTGCGCTGATCAAGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAACTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAG...............................................................................................................................GTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATTTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATTG..................................................................................ATATTAAGGAGGATCAAAAGCCATTAGATTGGCAAAACAGAATGAAGATAGCCTCAGGTGCAGCAGAAGGACTTGAGTATCTACACGAAAAGGCCAACCCGCCAATCATTTATCGTGATCTCAGAACTACC-ATATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="7252" PGL_stop="6422"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7252" e_stop="6422"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="7252" e_stop="6422" e_length="831"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7252" stop="6422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594060" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTTCCTGGTAAGGCAAGGCAGAATGAAATTGCTGAGAGGATGAACAAAACATTGAATGAGCGTGCAAGGAGTATGAGGATACACTGTGGGCTGCCCAAAACATTTTGGGCGGATGTTGTAAGCACAGTTGCATACTTGATCAATAGGGGACCATCAGTTCCTTGAGGGTTCAAGATTCTAGAGGAGGTGTGGACAGGAAAAGAACTCAAGTACTCACACTTGAGGACTTTTGGTTACACTGCTTATGTTCATGTTGATCCAAAAAAGAGAGACAAGCTTGATTCCAAGGCTGTGAAGTGTTACTTCATAGGCTATGGTTCTGGTTTGTTTGGTTACAGGTTTTGGGATGAAAAGAACAGAAAGATCCTGAGACATTGTGACGTGACATTTGATGAGTCTGTCCTGTACAAGGACAGAGAGCAGAAGATTCTAGAGATTACAAAGCAAGTGGGAGTTGAGTTGGAGAAGAGTATCCCATAGATGTCGAAGCAGATACTGAACCAACTCCTACAGAAGAATCTGAAGTGGAGCATGTTACACCCGAGCAGGTGTTAAGGAGATCATCTAGAACCATTAGGGCACCAGACATGTATTCACCTTCATTACACTATCTATTGCTGACTGATGAGGGGGAACCAGAGCTTTTGATGAGGCCATACAGGTGGAGGATTCGATCAAGTAGGAGCAAGCCATGGATGATGAGATGAGGTCACTTGAGAAGAACGACACATGGGTGTTGACTGAGTTACCTGCAGGGAAGAGAGCTATGCTGAACAAGTGGGTGTTCAGAATCAAGACTGAACCAGATGGCAAAAGAAGGTTCAAGGCTT</gDNA_template>
            <first_frame> S  S  W  *  G  K  A  E  *  N  C  *  E  D  E  Q  N  I  E  *  A  C  K  E  Y  E  D  T  L  W  A  A  Q  N  I  L  G  G  C  C  K  H  S  C  I  L  D  Q  *  G  T  I  S  S  L  R  V  Q  D  S  R  G  G  V  D  R  K  R  T  Q  V  L  T  L  E  D  F  W  L  H  C  L  C  S  C  *  S  K  K  E  R  Q  A  *  F  Q  G  C  E  V  L  L  H  R  L  W  F  W  F  V  W  L  Q  V  L  G  *  K  E  Q  K  D  P  E  T  L  *  R  D  I  *  *  V  C  P  V  Q  G  Q  R  A  E  D  S  R  D  Y  K  A  S  G  S  *  V  G  E  E  Y  P  I  D  V  E  A  D  T  E  P  T  P  T  E  E  S  E  V  E  H  V  T  P  E  Q  V  L  R  R  S  S  R  T  I  R  A  P  D  M  Y  S  P  S  L  H  Y  L  L  L  T  D  E  G  E  P  E  L  L  M  R  P  Y  R  W  R  I  R  S  S  R  S  K  P  W  M  M  R  *  G  H  L  R  R  T  T  H  G  C  *  L  S  Y  L  Q  G  R  E  L  C  *  T  S  G  C  S  E  S  R  L  N  Q  M  A  K  E  G  S  R  L </first_frame>
            <second_frame>  V  P  G  K  A  R  Q  N  E  I  A  E  R  M  N  K  T  L  N  E  R  A  R  S  M  R  I  H  C  G  L  P  K  T  F  W  A  D  V  V  S  T  V  A  Y  L  I  N  R  G  P  S  V  P  *  G  F  K  I  L  E  E  V  W  T  G  K  E  L  K  Y  S  H  L  R  T  F  G  Y  T  A  Y  V  H  V  D  P  K  K  R  D  K  L  D  S  K  A  V  K  C  Y  F  I  G  Y  G  S  G  L  F  G  Y  R  F  W  D  E  K  N  R  K  I  L  R  H  C  D  V  T  F  D  E  S  V  L  Y  K  D  R  E  Q  K  I  L  E  I  T  K  Q  V  G  V  E  L  E  K  S  I  P  *  M  S  K  Q  I  L  N  Q  L  L  Q  K  N  L  K  W  S  M  L  H  P  S  R  C  *  G  D  H  L  E  P  L  G  H  Q  T  C  I  H  L  H  Y  T  I  Y  C  *  L  M  R  G  N  Q  S  F  *  *  G  H  T  G  G  G  F  D  Q  V  G  A  S  H  G  *  *  D  E  V  T  *  E  E  R  H  M  G  V  D  *  V  T  C  R  E  E  S  Y  A  E  Q  V  G  V  Q  N  Q  D  *  T  R  W  Q  K  K  V  Q  G   </second_frame>
            <third_frame>   F  L  V  R  Q  G  R  M  K  L  L  R  G  *  T  K  H  *  M  S  V  Q  G  V  *  G  Y  T  V  G  C  P  K  H  F  G  R  M  L  *  A  Q  L  H  T  *  S  I  G  D  H  Q  F  L  E  G  S  R  F  *  R  R  C  G  Q  E  K  N  S  S  T  H  T  *  G  L  L  V  T  L  L  M  F  M  L  I  Q  K  R  E  T  S  L  I  P  R  L  *  S  V  T  S  *  A  M  V  L  V  C  L  V  T  G  F  G  M  K  R  T  E  R  S  *  D  I  V  T  *  H  L  M  S  L  S  C  T  R  T  E  S  R  R  F  *  R  L  Q  S  K  W  E  L  S  W  R  R  V  S  H  R  C  R  S  R  Y  *  T  N  S  Y  R  R  I  *  S  G  A  C  Y  T  R  A  G  V  K  E  I  I  *  N  H  *  G  T  R  H  V  F  T  F  I  T  L  S  I  A  D  *  *  G  G  T  R  A  F  D  E  A  I  Q  V  E  D  S  I  K  *  E  Q  A  M  D  D  E  M  R  S  L  E  K  N  D  T  W  V  L  T  E  L  P  A  G  K  R  A  M  L  N  K  W  V  F  R  I  K  T  E  P  D  G  K  R  R  F  K  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7086" stop="6772"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>312</number_coding_nucleotides>
                  <number_encoded_amino_acids>104</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFKILEEVWTGKELKYSHLRTFGYTAYVHVDPKKRDKLDSKAVKCYFIGYGSGLFGYRFWDEKNRKILRHCDVTFDESVLYKDREQKILEITKQVGVELEKSIP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6793" stop="6545"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGEEYPIDVEADTEPTPTEESEVEHVTPEQVLRRSSRTIRAPDMYSPSLHYLLLTDEGEPELLMRPYRWRIRSSRSKPWMMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10888" PGL_stop="10448"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10888" e_stop="10448"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10888" e_stop="10448" e_length="441"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10888" stop="10448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U578833" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGGAAAGGAAAAGTTTCTTAAAGAAGAGATCAAACACATTGATCCTCAGAAGAAATCAATCACTTGGGAAGTAATCGAAGGAGATGTGCTAGAGTTGTACAACTTCTTCATTATTACCACGTCCAGTGAACACCAGTGGACTACAGTAACATTTGAATACGAGAAGAAAACTGAAAATATTCCAGAGCCTCTTTCGTTCTTGGATTATTTCGTCAATGTGATGAAAGATATGGAGGGTCATCTACTCAGCAAATAGAATGTTCTGTGTATGTTTGTGCTTATGTGATGAATGTTTGGTAATATTGACGAGGTCCAGCTAACGTATAAAATAAATTAATAATGCTATATATAGTCTCTTCTGTGAATGTAATTCCAGATATGGTCAAAACATATATATATATATATATATATGTTAAGATATTAGAGTATGAATATTTTTG</gDNA_template>
            <first_frame> M  E  R  K  S  F  L  K  K  R  S  N  T  L  I  L  R  R  N  Q  S  L  G  K  *  S  K  E  M  C  *  S  C  T  T  S  S  L  L  P  R  P  V  N  T  S  G  L  Q  *  H  L  N  T  R  R  K  L  K  I  F  Q  S  L  F  R  S  W  I  I  S  S  M  *  *  K  I  W  R  V  I  Y  S  A  N  R  M  F  C  V  C  L  C  L  C  D  E  C  L  V  I  L  T  R  S  S  *  R  I  K  *  I  N  N  A  I  Y  S  L  F  C  E  C  N  S  R  Y  G  Q  N  I  Y  I  Y  I  Y  I  C  *  D  I  R  V  *  I  F  L </first_frame>
            <second_frame>  W  K  G  K  V  S  *  R  R  D  Q  T  H  *  S  S  E  E  I  N  H  L  G  S  N  R  R  R  C  A  R  V  V  Q  L  L  H  Y  Y  H  V  Q  *  T  P  V  D  Y  S  N  I  *  I  R  E  E  N  *  K  Y  S  R  A  S  F  V  L  G  L  F  R  Q  C  D  E  R  Y  G  G  S  S  T  Q  Q  I  E  C  S  V  Y  V  C  A  Y  V  M  N  V  W  *  Y  *  R  G  P  A  N  V  *  N  K  L  I  M  L  Y  I  V  S  S  V  N  V  I  P  D  M  V  K  T  Y  I  Y  I  Y  I  Y  V  K  I  L  E  Y  E  Y  F   </second_frame>
            <third_frame>   G  K  E  K  F  L  K  E  E  I  K  H  I  D  P  Q  K  K  S  I  T  W  E  V  I  E  G  D  V  L  E  L  Y  N  F  F  I  I  T  T  S  S  E  H  Q  W  T  T  V  T  F  E  Y  E  K  K  T  E  N  I  P  E  P  L  S  F  L  D  Y  F  V  N  V  M  K  D  M  E  G  H  L  L  S  K  *  N  V  L  C  M  F  V  L  M  *  *  M  F  G  N  I  D  E  V  Q  L  T  Y  K  I  N  *  *  C  Y  I  *  S  L  L  *  M  *  F  Q  I  W  S  K  H  I  Y  I  Y  I  Y  M  L  R  Y  *  S  M  N  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10886" stop="10632"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEKFLKEEIKHIDPQKKSITWEVIEGDVLELYNFFIITTSSEHQWTTVTFEYEKKTENIPEPLSFLDYFVNVMKDMEGHLLSK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="26185" PGL_stop="26463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26185" e_stop="26463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="26185" e_stop="26463" e_length="279"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26185" stop="26463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTGGTGTTTGCCACAAAAATGCCAAGAAGGAGTGTTAGACAATTGGCATTTTTTCAGCTTATTATTATTTGTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTTTAGCTAGACTTAGTAAACTTTAGTTGCTCAACTTTCTGAAG</gDNA_template>
            <first_frame> I  L  L  E  K  S  N  N  L  M  K  C  C  L  F  I  V  H  L  R  T  S  *  L  T  F  S  P  S  H  C  Q  R  K  G  L  K  I  R  G  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  L  A  F  F  Q  L  I  I  I  C  T  I  F  Y  L  F  Q  F  S  A  S  Y  F  L  A  R  L  S  K  L  *  L  L  N  F  L  K </first_frame>
            <second_frame>  F  Y  *  R  S  P  T  I  *  *  S  V  A  C  S  L  F  I  *  E  P  A  S  *  H  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  A  K  N  W  C  L  P  Q  K  C  Q  E  G  V  L  D  N  W  H  F  F  S  L  L  L  F  V  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  L  D  L  V  N  F  S  C  S  T  F  *   </second_frame>
            <third_frame>   F  I  R  E  V  Q  Q  S  N  E  V  L  L  V  H  C  S  S  E  N  Q  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  P  R  Q  R  I  G  V  C  H  K  N  A  K  K  E  C  *  T  I  G  I  F  S  A  Y  Y  Y  L  Y  Y  F  L  L  I  S  I  *  C  F  L  F  F  S  *  T  *  *  T  L  V  A  Q  L  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="28565" PGL_stop="28970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28565" e_stop="28970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.916"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.916">
            <gDNA_exon_boundary e_start="28565" e_stop="28970" e_length="406"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28565" stop="28970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGATTTTATAACACGTTATCAGCACGAGTCTCTAGCCAATTAAGATTGAGTTTTAGTTTTTATTTAACTCATGTTTTGGTTGATCTCGTTATGAGAATCAAGGTATTATATGCATAAAATCACGTATGTATTTTCTAAAATATTTTTATGATTTAAAATACAGTAGTATTCAATCACTAACAATTATCAGGAACTAAAGGCATATACAACTATTGGTTGAGTATGACATGTTATATAAAACTTCTGAAATGGAAGAAGGTATAAAATTTTAATAGCATGAGTCTGAATATTATTTTGATTGTTTTGAAAGACTCAAAGGGTAAGTCATGTTGTACTTCGGTCTATTATACCGTTGGTTAAGGGTAAGACGATGAATTCAAGTTTCATCGCACCAAAAGGGTAAG</gDNA_template>
            <first_frame> L  D  F  I  T  R  Y  Q  H  E  S  L  A  N  *  D  *  V  L  V  F  I  *  L  M  F  W  L  I  S  L  *  E  S  R  Y  Y  M  H  K  I  T  Y  V  F  S  K  I  F  L  *  F  K  I  Q  *  Y  S  I  T  N  N  Y  Q  E  L  K  A  Y  T  T  I  G  *  V  *  H  V  I  *  N  F  *  N  G  R  R  Y  K  I  L  I  A  *  V  *  I  L  F  *  L  F  *  K  T  Q  R  V  S  H  V  V  L  R  S  I  I  P  L  V  K  G  K  T  M  N  S  S  F  I  A  P  K  G  *  </first_frame>
            <second_frame>  L  I  L  *  H  V  I  S  T  S  L  *  P  I  K  I  E  F  *  F  L  F  N  S  C  F  G  *  S  R  Y  E  N  Q  G  I  I  C  I  K  S  R  M  Y  F  L  K  Y  F  Y  D  L  K  Y  S  S  I  Q  S  L  T  I  I  R  N  *  R  H  I  Q  L  L  V  E  Y  D  M  L  Y  K  T  S  E  M  E  E  G  I  K  F  *  *  H  E  S  E  Y  Y  F  D  C  F  E  R  L  K  G  *  V  M  L  Y  F  G  L  L  Y  R  W  L  R  V  R  R  *  I  Q  V  S  S  H  Q  K  G  K </second_frame>
            <third_frame>   *  F  Y  N  T  L  S  A  R  V  S  S  Q  L  R  L  S  F  S  F  Y  L  T  H  V  L  V  D  L  V  M  R  I  K  V  L  Y  A  *  N  H  V  C  I  F  *  N  I  F  M  I  *  N  T  V  V  F  N  H  *  Q  L  S  G  T  K  G  I  Y  N  Y  W  L  S  M  T  C  Y  I  K  L  L  K  W  K  K  V  *  N  F  N  S  M  S  L  N  I  I  L  I  V  L  K  D  S  K  G  K  S  C  C  T  S  V  Y  Y  T  V  G  *  G  *  D  D  E  F  K  F  H  R  T  K  R  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="50640" PGL_stop="51278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50640" e_stop="51278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.941"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="50640" e_stop="51278" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50640" stop="51278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586115" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACCCCATACCCACAACATCTCAAGCCCGATCCGTTTTGGGTCCTTCCCGTCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCTGTGCCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATAGATGACGAGTTTAAGGCTTTGGCTAATCAGAAAATTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGCAAATGGGTGTAAAAATTAAACACAATGCAGATGACAGTATTTCTAGGTACAAGGCTCGTTTAGTTGCTAAAGGCTATAATCAGGAGTATGACCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATAAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGTCGCAACCACCGGGCTATGTTGATCCCCG</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  P  I  P  T  T  S  Q  A  R  S  V  L  G  P  S  R  P  P  P  N  H  H  R  P  C  H  P  P  I  L  I  P  C  *  P  V  P  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  *  M  T  S  L  R  L  W  L  I  R  K  F  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  A  N  G  C  K  N  *  T  Q  C  R  *  Q  Y  F  *  V  Q  G  S  F  S  C  *  R  L  *  S  G  V  *  P  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  *  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  V  A  T  T  G  L  C  *  S  P </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  K  P  D  P  F  W  V  L  P  V  H  P  R  I  T  T  A  R  A  T  P  Q  Y  S  S  H  V  N  L  C  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  R  *  R  V  *  G  F  G  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  Q  M  G  V  K  I  K  H  N  A  D  D  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  D  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  K  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  S  Q  P  P  G  Y  V  D  P   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  S  T  P  E  S  P  P  P  V  P  P  P  N  T  H  P  M  L  T  C  A  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  I  D  D  E  F  K  A  L  A  N  Q  K  I  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  *  K  L  N  T  M  Q  M  T  V  F  L  G  T  R  L  V  *  L  L  K  A  I  I  R  S  M  T  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  C  R  N  H  R  A  M  L  I  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50642" stop="51019"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>375</number_coding_nucleotides>
                  <number_encoded_amino_acids>125</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPPHTHNISSPIRFGSFPSTPESPPPVPPPNTHPMLTCAKAGIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAIDDEFKALANQKIWVLVPKPHGRHPVGCKWV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50980" stop="51276"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>297</number_coding_nucleotides>
                  <number_encoded_amino_acids>99</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>APWAAPSGLQMGVKIKHNADDSISRYKARLVAKGYNQEYDLDYSETFSPVIRQETIRLVLSLAVRNNWLINKLDVSNAFLHGMLDETIYMSQPPGYVDP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="64246" PGL_stop="71681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64246" e_stop="64389"/>
            <exon e_start="65244" e_stop="65538"/>
            <exon e_start="67517" e_stop="68056"/>
            <exon e_start="69216" e_stop="69277"/>
            <exon e_start="69406" e_stop="69662"/>
            <exon e_start="69782" e_stop="70062"/>
            <exon e_start="70188" e_stop="71681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.991" e_score="0.993"/>
          <exon-intron don_prob="0.843" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.677" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.973" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.902" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="64246" e_stop="64389" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="64390" i_stop="65243" i_length="854"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65244" e_stop="65538" e_length="295"/>
          </exon>
          <intron i_serial="2" don_prob="0.843" acc_prob="0.998">
            <gDNA_intron_boundary i_start="65539" i_stop="67516" i_length="1978"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="67517" e_stop="68056" e_length="540"/>
          </exon>
          <intron i_serial="3" don_prob="0.677" acc_prob="0.984">
            <gDNA_intron_boundary i_start="68057" i_stop="69215" i_length="1159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69216" e_stop="69277" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.973" acc_prob="0.999">
            <gDNA_intron_boundary i_start="69278" i_stop="69405" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69406" e_stop="69662" e_length="257"/>
          </exon>
          <intron i_serial="5" don_prob="0.902" acc_prob="0.998">
            <gDNA_intron_boundary i_start="69663" i_stop="69781" i_length="119"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69782" e_stop="70062" e_length="281"/>
          </exon>
          <intron i_serial="6" don_prob="0.989" acc_prob="0.984">
            <gDNA_intron_boundary i_start="70063" i_stop="70187" i_length="125"/>
          </intron>
          <exon e_serial="7" e_score="0.999">
            <gDNA_exon_boundary e_start="70188" e_stop="71681" e_length="1494"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64246" stop="64389"/>
              <exon start="65244" stop="65538"/>
              <exon start="67517" stop="68056"/>
              <exon start="69216" stop="69277"/>
              <exon start="69406" stop="69662"/>
              <exon start="69782" stop="70062"/>
              <exon start="70188" stop="71681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U583282" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTCTCTCTCTCCTTCCCTTTAATCGCACAGTACTCTAGAGACCAGACAAGTGAGTACAACTACACTCTCTCTCAAACTGAGCTTTCTTGTCGGAAAATTTTCACGCTTCCCTTATCGCCGGCGTCTTTCTCCGTTTCCGGCCG : CATATATTTGGTGTGGCTTTAGATTCAATTCGACGACTTTGCAATTCATGTTGATTTAAGTTTGCTGTGGAAGTTTCAGTACCTCTTTGTATGACCATTCGAAAGCTTAATGATTCGGAAAAAAGTGTTCTTGACTTACAAGCGAAAGAGGCTACCAGGTTCTGATCTTTTTTTGGAAAATGGGACTCATAATACACCTACTGAGTGTATGAAATCAAAAGCTGTGGCCCCTTTGCTGGAGGAAGAGGAGAAGTATGACAACCCTAGCTTCAAGGATGGAAAGAAAGACTTTGAG : GATAATTCTGAAGAAAATCAGTCCTCAAAGGGTTCCAAAGGGCCTCTCTCTGAAGGAGAACCAAGGAATTCACAGAAGAGATTATGTTCTTGCATTATTTCAGGCAGTATATGTGATAGTAAATGCACCCAGAAGTTTTCTCTTTCCCTGTTGACAGGATTGAATTCTTCGAGAGAACAGGATTTGGTCTCCCCAAGTTCTGGTGGTGATGAGAGGGGATGCGATCTTAAGGATTCTGATTCCTCTGATTTGGTTAAACTGAGTCTGGAAGAAGTTGCCACACCAAAAGACATCTCTCTGATCCCCTCTGTAAATGCAGTTAGTACAAGTAAATTGTCTTCCAGTCTGATTACTTTTCAGCGAAGAGCTAAGCGGGACAAGGATGCAGGCCGGGCATATGCCAAGGGCAATCTTGAAGCTGAAGATGTTGCTTGCTTATCAGTTGAAAATACTGCATGTCTTGTCGCTCCTCATGACTCTGATAAATCAGTTGCTAAGAGTTGCTCAGTGGATCTTTCAGCAGATTTTAAGCATCCAGAG : ACAACCAACGGAGGTGAGAATTATCAATGTGCTTGTGCTGGATCACCTGCACAGATGAAGAT : ATTGTTAGATGTTAATGAACAGCCTATCTTAGTGAAGGAAGCTCAGCCAATCGATGAAGTAGCTGATCCAAATTCTGGAGTAGGCTTCTCTGGTTTGGACGACGGTGTTGCTTCAGATACTTTCAAGAAGTCATCATTTCATAGCCCTAAGGACCCTTCTTTTGATGGTTTGTCCAGAACTGAAGTGCCAATATCGTCTCCCTTAGAGGTTGCAAGTAACACTGGTTCCCAAGCTTTAGATATATCTATACCTTGTG : ATAGTGATGACACAATGGACTGCAATAGGTCGGAACAAGCATCTGATGAACGCCTCATCCCAACAGCACTGGAAGTTCAGCAGAACCCTCCTTGCTTCTTGAATGGAAATAATTCGACGGTTTTACATAGGGTGCCTTCGGACAAAAGTTTGGAATTACTTGACATCAAGCCCGAGAAGATAACTCCAATTCATGCAGAGTTGCCTGAAGCTGGTTGCTTATCTGAAAAAGCAATGGCTGATAGTGGTGAAAGCAGTTCTTCGAAAAATGATTTACTGCAG : CTTTTGTCGGAAGATAGAACCTACAACTTTTTCCCATTAGCAAGCCTGCAGGAAAATGAGAGTGCTCATGTTAATTCTAAAGAAGGAAAAGCTTCCTCATTAGAAGAGAAGAGACATTGTGCATTTACTGTAGCAGAATCCTCAGATTTTCTTGGTTTGTCACTGCCAAGTCAAGCTTTAGCTTCGAGATCCTTACAGTTGGCTGACATATGGAATCAACCAAGCGAATCCATTCAAGGAGCAGCTTCTCAGGTTTCTGTTGATGCATCAATACTTCATCGACATCAAATGATCCTGGACAACATTCTTAACAGAGGAAGATCTCAAAACGGAAACAAGAGGAGATTTGCAGAAAAATTAGGGACTCCAAACATGTGGTCAGAAGAGGAGCTAGATTCTCTTTGGATTGGTGTGAGGCGGCATGGAAGAGGTAACTGGGATGTGATGTTGAGGGATCCAAGGCTGCGCTTTTTTTCGTGGAGGACGCCAACAGACTTGGCAGAACAGTGGATGGAGGAACAGTCGAAACTTTTACATGGAAAATCCATTTCCCCTGTGAGACAGTTACATAAAGCTGATGTTTCATCCCATGGTATGGATGATGTTAAACTTTCACTTGGGCATGCACATTCCCAGTCAGGAGACAACATCCGGAGCCAAATACCATTTCATTTTCCAGATGTTCAAAATACTTCGCAAAAATTACTTCACCTGGCTACAACAAATGTAGGGACCTTAGATTCTCTCTGTCTCAGGGGAAACCGCAAAAGAGCTAAGTTCAACCAATCCGAGAACTCTGCAGGTTCAGGTGTTGAATGTTCATTCAGTTCTCGAATTATGAGCAGAGTGTCTGAAGTAGGTAATTTGCCTCACTGGCTCAAGGAAGTGGTTGCAATCCCACCCAGGCCTCCTGGATTTGCCCCAGATTCTTCATGGTTTATCCATCCATGGATTGGTCCACCGTTTTCTGAACCTAAGCGAGCTCACTGTGAATCAAGGAACAGATTGAGCGACTTGTACACTACACCAAAAACTGAGCTGAATAATGGTAATGCTGATTGTGCTCATCTCCCTATAAGAGAAGGGAAGCAACATTGTAAGTCAGAAGCAGATAAAAAAGTTGAGCTGATTGTCATCAATAGCGACGCCTCATCAGAGGAGACAATATCAGATGATTGTAATGTAAGGCATTAGCTTAAGTTGGGATTTCATAGTTCAACAATGGTTAAACTTGTATAAAAGTAGTTTAAGTATCTCAGCTATTTCTCGAGGGTGAGATTAGTTGAATCAGGTAGTTTTTATTTTCCCAAATTCTTATTTTAGCTATTTGCTGGTAAGCTATGTTGTAAACTCACTTTAGGTCCTAATTAGGGATTGGATCAAAGCCAAGCAAATCCAAACTCCTTCATAAACTCAAGGCTGGTAAGCTTTCTACCTATGGAAAATGTGATAAAATCCCAGGCCGATAATCATTATAGTGAGAGTTTGGCATGA</gDNA_template>
            <first_frame> T  L  S  L  L  P  F  N  R  T  V  L  *  R  P  D  K  *  V  Q  L  H  S  L  S  N  *  A  F  L  S  E  N  F  H  A  S  L  I  A  G  V  F  L  R  F  R  P  :  H  I  F  G  V  A  L  D  S  I  R  R  L  C  N  S  C  *  F  K  F  A  V  E  V  S  V  P  L  C  M  T  I  R  K  L  N  D  S  E  K  S  V  L  D  L  Q  A  K  E  A  T  R  F  *  S  F  F  G  K  W  D  S  *  Y  T  Y  *  V  Y  E  I  K  S  C  G  P  F  A  G  G  R  G  E  V  *  Q  P  *  L  Q  G  W  K  E  R  L  *   : G  *  F  *  R  K  S  V  L  K  G  F  Q  R  A  S  L  *  R  R  T  K  E  F  T  E  E  I  M  F  L  H  Y  F  R  Q  Y  M  *  *  *  M  H  P  E  V  F  S  F  P  V  D  R  I  E  F  F  E  R  T  G  F  G  L  P  K  F  W  W  *  *  E  G  M  R  S  *  G  F  *  F  L  *  F  G  *  T  E  S  G  R  S  C  H  T  K  R  H  L  S  D  P  L  C  K  C  S  *  Y  K  *  I  V  F  Q  S  D  Y  F  S  A  K  S  *  A  G  Q  G  C  R  P  G  I  C  Q  G  Q  S  *  S  *  R  C  C  L  L  I  S  *  K  Y  C  M  S  C  R  S  S  *  L  *  *  I  S  C  *  E  L  L  S  G  S  F  S  R  F  *  A  S  R   : D  N  Q  R  R  *  E  L  S  M  C  L  C  W  I  T  C  T  D  E  D  :  I  V  R  C  *  *  T  A  Y  L  S  E  G  S  S  A  N  R  *  S  S  *  S  K  F  W  S  R  L  L  W  F  G  R  R  C  C  F  R  Y  F  Q  E  V  I  I  S  *  P  *  G  P  F  F  *  W  F  V  Q  N  *  S  A  N  I  V  S  L  R  G  C  K  *  H  W  F  P  S  F  R  Y  I  Y  T  L  * :   *  *  *  H  N  G  L  Q  *  V  G  T  S  I  *  *  T  P  H  P  N  S  T  G  S  S  A  E  P  S  L  L  L  E  W  K  *  F  D  G  F  T  *  G  A  F  G  Q  K  F  G  I  T  *  H  Q  A  R  E  D  N  S  N  S  C  R  V  A  *  S  W  L  L  I  *  K  S  N  G  *  *  W  *  K  Q  F  F  E  K  *  F  T  A   : A  F  V  G  R  *  N  L  Q  L  F  P  I  S  K  P  A  G  K  *  E  C  S  C  *  F  *  R  R  K  S  F  L  I  R  R  E  E  T  L  C  I  Y  C  S  R  I  L  R  F  S  W  F  V  T  A  K  S  S  F  S  F  E  I  L  T  V  G  *  H  M  E  S  T  K  R  I  H  S  R  S  S  F  S  G  F  C  *  C  I  N  T  S  S  T  S  N  D  P  G  Q  H  S  *  Q  R  K  I  S  K  R  K  Q  E  E  I  C  R  K  I  R  D  S  K  H  V  V  R  R  G  A  R  F  S  L  D  W  C  E  A  A  W  K  R  *  L  G  C  D  V  E  G  S  K  A  A  L  F  F  V  E  D  A  N  R  L  G  R  T  V  D  G  G  T  V  E  T  F  T  W  K  I  H  F  P  C  E  T  V  T  *  S  *  C  F  I  P  W  Y  G  *  C  *  T  F  T  W  A  C  T  F  P  V  R  R  Q  H  P  E  P  N  T  I  S  F  S  R  C  S  K  Y  F  A  K  I  T  S  P  G  Y  N  K  C  R  D  L  R  F  S  L  S  Q  G  K  P  Q  K  S  *  V  Q  P  I  R  E  L  C  R  F  R  C  *  M  F  I  Q  F  S  N  Y  E  Q  S  V  *  S  R  *  F  A  S  L  A  Q  G  S  G  C  N  P  T  Q  A  S  W  I  C  P  R  F  F  M  V  Y  P  S  M  D  W  S  T  V  F  *  T  *  A  S  S  L  *  I  K  E  Q  I  E  R  L  V  H  Y  T  K  N  *  A  E  *  W  *  C  *  L  C  S  S  P  Y  K  R  R  E  A  T  L  *  V  R  S  R  *  K  S  *  A  D  C  H  Q  *  R  R  L  I  R  G  D  N  I  R  *  L  *  C  K  A  L  A  *  V  G  I  S  *  F  N  N  G  *  T  C  I  K  V  V  *  V  S  Q  L  F  L  E  G  E  I  S  *  I  R  *  F  L  F  S  Q  I  L  I  L  A  I  C  W  *  A  M  L  *  T  H  F  R  S  *  L  G  I  G  S  K  P  S  K  S  K  L  L  H  K  L  K  A  G  K  L  S  T  Y  G  K  C  D  K  I  P  G  R  *  S  L  *  *  E  F  G  M  </first_frame>
            <second_frame>  L  S  L  S  F  P  L  I  A  Q  Y  S  R  D  Q  T  S  E  Y  N  Y  T  L  S  Q  T  E  L  S  C  R  K  I  F  T  L  P  L  S  P  A  S  F  S  V  S  G  R :   I  Y  L  V  W  L  *  I  Q  F  D  D  F  A  I  H  V  D  L  S  L  L  W  K  F  Q  Y  L  F  V  *  P  F  E  S  L  M  I  R  K  K  V  F  L  T  Y  K  R  K  R  L  P  G  S  D  L  F  L  E  N  G  T  H  N  T  P  T  E  C  M  K  S  K  A  V  A  P  L  L  E  E  E  E  K  Y  D  N  P  S  F  K  D  G  K  K  D  F  E  :  D  N  S  E  E  N  Q  S  S  K  G  S  K  G  P  L  S  E  G  E  P  R  N  S  Q  K  R  L  C  S  C  I  I  S  G  S  I  C  D  S  K  C  T  Q  K  F  S  L  S  L  L  T  G  L  N  S  S  R  E  Q  D  L  V  S  P  S  S  G  G  D  E  R  G  C  D  L  K  D  S  D  S  S  D  L  V  K  L  S  L  E  E  V  A  T  P  K  D  I  S  L  I  P  S  V  N  A  V  S  T  S  K  L  S  S  S  L  I  T  F  Q  R  R  A  K  R  D  K  D  A  G  R  A  Y  A  K  G  N  L  E  A  E  D  V  A  C  L  S  V  E  N  T  A  C  L  V  A  P  H  D  S  D  K  S  V  A  K  S  C  S  V  D  L  S  A  D  F  K  H  P  E  :  T  T  N  G  G  E  N  Y  Q  C  A  C  A  G  S  P  A  Q  M  K  I :   L  L  D  V  N  E  Q  P  I  L  V  K  E  A  Q  P  I  D  E  V  A  D  P  N  S  G  V  G  F  S  G  L  D  D  G  V  A  S  D  T  F  K  K  S  S  F  H  S  P  K  D  P  S  F  D  G  L  S  R  T  E  V  P  I  S  S  P  L  E  V  A  S  N  T  G  S  Q  A  L  D  I  S  I  P  C   : D  S  D  D  T  M  D  C  N  R  S  E  Q  A  S  D  E  R  L  I  P  T  A  L  E  V  Q  Q  N  P  P  C  F  L  N  G  N  N  S  T  V  L  H  R  V  P  S  D  K  S  L  E  L  L  D  I  K  P  E  K  I  T  P  I  H  A  E  L  P  E  A  G  C  L  S  E  K  A  M  A  D  S  G  E  S  S  S  S  K  N  D  L  L  Q  :  L  L  S  E  D  R  T  Y  N  F  F  P  L  A  S  L  Q  E  N  E  S  A  H  V  N  S  K  E  G  K  A  S  S  L  E  E  K  R  H  C  A  F  T  V  A  E  S  S  D  F  L  G  L  S  L  P  S  Q  A  L  A  S  R  S  L  Q  L  A  D  I  W  N  Q  P  S  E  S  I  Q  G  A  A  S  Q  V  S  V  D  A  S  I  L  H  R  H  Q  M  I  L  D  N  I  L  N  R  G  R  S  Q  N  G  N  K  R  R  F  A  E  K  L  G  T  P  N  M  W  S  E  E  E  L  D  S  L  W  I  G  V  R  R  H  G  R  G  N  W  D  V  M  L  R  D  P  R  L  R  F  F  S  W  R  T  P  T  D  L  A  E  Q  W  M  E  E  Q  S  K  L  L  H  G  K  S  I  S  P  V  R  Q  L  H  K  A  D  V  S  S  H  G  M  D  D  V  K  L  S  L  G  H  A  H  S  Q  S  G  D  N  I  R  S  Q  I  P  F  H  F  P  D  V  Q  N  T  S  Q  K  L  L  H  L  A  T  T  N  V  G  T  L  D  S  L  C  L  R  G  N  R  K  R  A  K  F  N  Q  S  E  N  S  A  G  S  G  V  E  C  S  F  S  S  R  I  M  S  R  V  S  E  V  G  N  L  P  H  W  L  K  E  V  V  A  I  P  P  R  P  P  G  F  A  P  D  S  S  W  F  I  H  P  W  I  G  P  P  F  S  E  P  K  R  A  H  C  E  S  R  N  R  L  S  D  L  Y  T  T  P  K  T  E  L  N  N  G  N  A  D  C  A  H  L  P  I  R  E  G  K  Q  H  C  K  S  E  A  D  K  K  V  E  L  I  V  I  N  S  D  A  S  S  E  E  T  I  S  D  D  C  N  V  R  H  *  L  K  L  G  F  H  S  S  T  M  V  K  L  V  *  K  *  F  K  Y  L  S  Y  F  S  R  V  R  L  V  E  S  G  S  F  Y  F  P  K  F  L  F  *  L  F  A  G  K  L  C  C  K  L  T  L  G  P  N  *  G  L  D  Q  S  Q  A  N  P  N  S  F  I  N  S  R  L  V  S  F  L  P  M  E  N  V  I  K  S  Q  A  D  N  H  Y  S  E  S  L  A  * </second_frame>
            <third_frame>   S  L  S  P  S  L  *  S  H  S  T  L  E  T  R  Q  V  S  T  T  T  L  S  L  K  L  S  F  L  V  G  K  F  S  R  F  P  Y  R  R  R  L  S  P  F  P  A   : A  Y  I  W  C  G  F  R  F  N  S  T  T  L  Q  F  M  L  I  *  V  C  C  G  S  F  S  T  S  L  Y  D  H  S  K  A  *  *  F  G  K  K  C  S  *  L  T  S  E  R  G  Y  Q  V  L  I  F  F  W  K  M  G  L  I  I  H  L  L  S  V  *  N  Q  K  L  W  P  L  C  W  R  K  R  R  S  M  T  T  L  A  S  R  M  E  R  K  T  L  R :   I  I  L  K  K  I  S  P  Q  R  V  P  K  G  L  S  L  K  E  N  Q  G  I  H  R  R  D  Y  V  L  A  L  F  Q  A  V  Y  V  I  V  N  A  P  R  S  F  L  F  P  C  *  Q  D  *  I  L  R  E  N  R  I  W  S  P  Q  V  L  V  V  M  R  G  D  A  I  L  R  I  L  I  P  L  I  W  L  N  *  V  W  K  K  L  P  H  Q  K  T  S  L  *  S  P  L  *  M  Q  L  V  Q  V  N  C  L  P  V  *  L  L  F  S  E  E  L  S  G  T  R  M  Q  A  G  H  M  P  R  A  I  L  K  L  K  M  L  L  A  Y  Q  L  K  I  L  H  V  L  S  L  L  M  T  L  I  N  Q  L  L  R  V  A  Q  W  I  F  Q  Q  I  L  S  I  Q  R :   Q  P  T  E  V  R  I  I  N  V  L  V  L  D  H  L  H  R  *  R   : Y  C  *  M  L  M  N  S  L  S  *  *  R  K  L  S  Q  S  M  K  *  L  I  Q  I  L  E  *  A  S  L  V  W  T  T  V  L  L  Q  I  L  S  R  S  H  H  F  I  A  L  R  T  L  L  L  M  V  C  P  E  L  K  C  Q  Y  R  L  P  *  R  L  Q  V  T  L  V  P  K  L  *  I  Y  L  Y  L  V  :  I  V  M  T  Q  W  T  A  I  G  R  N  K  H  L  M  N  A  S  S  Q  Q  H  W  K  F  S  R  T  L  L  A  S  *  M  E  I  I  R  R  F  Y  I  G  C  L  R  T  K  V  W  N  Y  L  T  S  S  P  R  R  *  L  Q  F  M  Q  S  C  L  K  L  V  A  Y  L  K  K  Q  W  L  I  V  V  K  A  V  L  R  K  M  I  Y  C  S :   F  C  R  K  I  E  P  T  T  F  S  H  *  Q  A  C  R  K  M  R  V  L  M  L  I  L  K  K  E  K  L  P  H  *  K  R  R  D  I  V  H  L  L  *  Q  N  P  Q  I  F  L  V  C  H  C  Q  V  K  L  *  L  R  D  P  Y  S  W  L  T  Y  G  I  N  Q  A  N  P  F  K  E  Q  L  L  R  F  L  L  M  H  Q  Y  F  I  D  I  K  *  S  W  T  T  F  L  T  E  E  D  L  K  T  E  T  R  G  D  L  Q  K  N  *  G  L  Q  T  C  G  Q  K  R  S  *  I  L  F  G  L  V  *  G  G  M  E  E  V  T  G  M  *  C  *  G  I  Q  G  C  A  F  F  R  G  G  R  Q  Q  T  W  Q  N  S  G  W  R  N  S  R  N  F  Y  M  E  N  P  F  P  L  *  D  S  Y  I  K  L  M  F  H  P  M  V  W  M  M  L  N  F  H  L  G  M  H  I  P  S  Q  E  T  T  S  G  A  K  Y  H  F  I  F  Q  M  F  K  I  L  R  K  N  Y  F  T  W  L  Q  Q  M  *  G  P  *  I  L  S  V  S  G  E  T  A  K  E  L  S  S  T  N  P  R  T  L  Q  V  Q  V  L  N  V  H  S  V  L  E  L  *  A  E  C  L  K  *  V  I  C  L  T  G  S  R  K  W  L  Q  S  H  P  G  L  L  D  L  P  Q  I  L  H  G  L  S  I  H  G  L  V  H  R  F  L  N  L  S  E  L  T  V  N  Q  G  T  D  *  A  T  C  T  L  H  Q  K  L  S  *  I  M  V  M  L  I  V  L  I  S  L  *  E  K  G  S  N  I  V  S  Q  K  Q  I  K  K  L  S  *  L  S  S  I  A  T  P  H  Q  R  R  Q  Y  Q  M  I  V  M  *  G  I  S  L  S  W  D  F  I  V  Q  Q  W  L  N  L  Y  K  S  S  L  S  I  S  A  I  S  R  G  *  D  *  L  N  Q  V  V  F  I  F  P  N  S  Y  F  S  Y  L  L  V  S  Y  V  V  N  S  L  *  V  L  I  R  D  W  I  K  A  K  Q  I  Q  T  P  S  *  T  Q  G  W  *  A  F  Y  L  W  K  M  *  *  N  P  R  P  I  I  I  I  V  R  V  W  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65338" stop="65538"/>
                    <exon start="67517" stop="68056"/>
                    <exon start="69216" stop="69277"/>
                    <exon start="69406" stop="69662"/>
                    <exon start="69782" stop="70062"/>
                    <exon start="70188" stop="71381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2532</number_coding_nucleotides>
                  <number_encoded_amino_acids>844</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFESLMIRKKVFLTYKRKRLPGSDLFLENGTHNTPTECMKSKAVAPLLEEEEKYDNPSFKDGKKDFEDNSEENQSSKGSKGPLSEGEPRNSQKRLCSCIISGSICDSKCTQKFSLSLLTGLNSSREQDLVSPSSGGDERGCDLKDSDSSDLVKLSLEEVATPKDISLIPSVNAVSTSKLSSSLITFQRRAKRDKDAGRAYAKGNLEAEDVACLSVENTACLVAPHDSDKSVAKSCSVDLSADFKHPETTNGGENYQCACAGSPAQMKILLDVNEQPILVKEAQPIDEVADPNSGVGFSGLDDGVASDTFKKSSFHSPKDPSFDGLSRTEVPISSPLEVASNTGSQALDISIPCDSDDTMDCNRSEQASDERLIPTALEVQQNPPCFLNGNNSTVLHRVPSDKSLELLDIKPEKITPIHAELPEAGCLSEKAMADSGESSSSKNDLLQLLSEDRTYNFFPLASLQENESAHVNSKEGKASSLEEKRHCAFTVAESSDFLGLSLPSQALASRSLQLADIWNQPSESIQGAASQVSVDASILHRHQMILDNILNRGRSQNGNKRRFAEKLGTPNMWSEEELDSLWIGVRRHGRGNWDVMLRDPRLRFFSWRTPTDLAEQWMEEQSKLLHGKSISPVRQLHKADVSSHGMDDVKLSLGHAHSQSGDNIRSQIPFHFPDVQNTSQKLLHLATTNVGTLDSLCLRGNRKRAKFNQSENSAGSGVECSFSSRIMSRVSEVGNLPHWLKEVVAIPPRPPGFAPDSSWFIHPWIGPPFSEPKRAHCESRNRLSDLYTTPKTELNNGNADCAHLPIREGKQHCKSEADKKVELIVINSDASSEETISDDCNVRH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="117364" PGL_stop="117130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117364" e_stop="117130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="117364" e_stop="117130" e_length="235"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117364" stop="117130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598692" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTT</gDNA_template>
            <first_frame> G  R  C  E  *  A  G  K  F  F  S  A  D  S  V  I  S  F  L  H  V  *  A  D  F  F  S  R  K  C  L  E  S  A  Y  L  D  R  F  F  A  I  *  G  V  I  P  S  F  *  *  D  L  S  H  *  R  I  I  W  S  A  R  N  R  L  A  S  V  N  N  I  A  S  W  L  S  F  </first_frame>
            <second_frame>  E  G  A  N  K  R  G  N  S  S  R  L  T  Q  S  F  H  F  F  M  F  E  P  I  F  S  P  V  N  A  L  N  Q  P  I  *  T  V  S  S  P  F  K  A  L  S  P  V  F  S  E  I  S  P  T  D  V  S  F  G  P  P  E  T  G  W  P  A  *  I  T  S  P  V  G  Y  R  F </second_frame>
            <third_frame>   K  V  R  I  S  G  E  I  L  L  G  *  L  S  H  F  I  S  S  C  L  S  R  F  F  L  P  *  M  P  *  I  S  L  F  R  P  F  L  R  H  L  R  R  Y  P  Q  F  L  V  R  S  L  P  L  T  Y  H  L  V  R  P  K  Q  V  G  Q  R  E  *  H  R  Q  L  V  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="125428" PGL_stop="125175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="125428" e_stop="125175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="125428" e_stop="125175" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="125428" stop="125175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCACCAAAAAGAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCAAAGAGGAAAATAATCTATGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGATGTGGAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGTAGTTTTACTCAGACATACAAGTGTAAAATCCTTACTATAGTGATATTCGTTGCTCCTCTCGGGTCGTGGTTTTTCCCTTATTTAGGAGGGTTTCCACAT</gDNA_template>
            <first_frame> N  A  P  K  R  I  K  K  E  R  K  E  E  *  G  I  K  E  E  N  N  L  *  G  K  I  E  S  V  S  D  I  V  V  M  W  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  V  V  L  L  R  H  T  S  V  K  S  L  L  *  *  Y  S  L  L  L  S  G  R  G  F  S  L  I  *  E  G  F  H   </first_frame>
            <second_frame>  M  H  Q  K  E  L  K  R  R  E  K  K  S  E  A  S  K  R  K  I  I  Y  E  E  K  *  R  V  *  A  I  L  *  *  C  G  K  I  K  R  V  L  F  L  L  N  V  *  W  S  L  *  F  Y  S  D  I  Q  V  *  N  P  Y  Y  S  D  I  R  C  S  S  R  V  V  V  F  P  L  F  R  R  V  S  T  </second_frame>
            <third_frame>   C  T  K  K  N  *  K  G  E  K  R  R  V  R  H  Q  R  G  K  *  S  M  R  K  N  R  E  C  E  R  Y  C  S  D  V  E  K  S  K  E  C  Y  F  F  *  M  C  S  G  L  C  S  F  T  Q  T  Y  K  C  K  I  L  T  I  V  I  F  V  A  P  L  G  S  W  F  F  P  Y  L  G  G  F  P  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="129286" PGL_stop="129171"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129286" e_stop="129171"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="129286" e_stop="129171" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129286" stop="129171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGCCACACTGCTCCTAAACTCGCTGCCATCTTTTTACGATACTTTAGCAACAACCATTTTACATGGTAAGGACTCTATTGAGTTGAAGGATGTCACATCAGCCCTTTTTCTTAA</gDNA_template>
            <first_frame> K  A  T  L  L  L  N  S  L  P  S  F  Y  D  T  L  A  T  T  I  L  H  G  K  D  S  I  E  L  K  D  V  T  S  A  L  F  L   </first_frame>
            <second_frame>  K  P  H  C  S  *  T  R  C  H  L  F  T  I  L  *  Q  Q  P  F  Y  M  V  R  T  L  L  S  *  R  M  S  H  Q  P  F  F  L  </second_frame>
            <third_frame>   S  H  T  A  P  K  L  A  A  I  F  L  R  Y  F  S  N  N  H  F  T  W  *  G  L  Y  *  V  E  G  C  H  I  S  P  F  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="130166" PGL_stop="129915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130166" e_stop="129915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="130166" e_stop="129915" e_length="252"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130166" stop="129915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U582381" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGCACCAAAAAGAATTAAAAAGGAGAGAAAAGAAGAGTGAGGCATCACAGAGGAAAATAATCTGTGAGGAAAAATAGAGAGTGTGAGCGATATTGTAGTGAGGTGAAAAAATCAAAAGAGTGTTATTTCTTTTGAATGTGTAGTGGTCTTTGGAGTTTTACTCAGACATACAAGTGTAAAATCCTTAATATAGTGATATTCGTTCCTCCTCTCGGGTCGTGGGTTTTTCCTTATTTAGGAGGGTTTCCAC</gDNA_template>
            <first_frame> N  A  P  K  R  I  K  K  E  R  K  E  E  *  G  I  T  E  E  N  N  L  *  G  K  I  E  S  V  S  D  I  V  V  R  *  K  N  Q  K  S  V  I  S  F  E  C  V  V  V  F  G  V  L  L  R  H  T  S  V  K  S  L  I  *  *  Y  S  F  L  L  S  G  R  G  F  F  L  I  *  E  G  F  H </first_frame>
            <second_frame>  M  H  Q  K  E  L  K  R  R  E  K  K  S  E  A  S  Q  R  K  I  I  C  E  E  K  *  R  V  *  A  I  L  *  *  G  E  K  I  K  R  V  L  F  L  L  N  V  *  W  S  L  E  F  Y  S  D  I  Q  V  *  N  P  *  Y  S  D  I  R  S  S  S  R  V  V  G  F  S  L  F  R  R  V  S   </second_frame>
            <third_frame>   C  T  K  K  N  *  K  G  E  K  R  R  V  R  H  H  R  G  K  *  S  V  R  K  N  R  E  C  E  R  Y  C  S  E  V  K  K  S  K  E  C  Y  F  F  *  M  C  S  G  L  W  S  F  T  Q  T  Y  K  C  K  I  L  N  I  V  I  F  V  P  P  L  G  S  W  V  F  P  Y  L  G  G  F  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0198A03.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="132171" PGL_stop="131411"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132171" e_stop="131411"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.970"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="132171" e_stop="131411" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132171" stop="131411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGCAGAAGAGTTCAGATAACGAAGCCTTATCGAATAAGAATGAGGATGAGAGCAGTGAGGATGATCAAGACAATGTTCATTACAATAAAAAAATTGACATTAATAAAAATGTTTTCGACAGTGATGAGGATGATGGAGCAAGTTCTGATTACGGATACGGAAGTACATCAGGATCTTCAGAGAATGAGAAAGAAGACATCAGTCTTGAACCTGGAGGAGGGATACCAACAAAATTTGTCAAATGGAGTTCGGAATCAAAACGTAAAAGCAAGATAAAGTCATCCTCTCGAGCCATACGCTCAACTTCAAGACGTAAAAGCAAGGTAAAACGGTCTGAAAGTATTATCTCAAACGACGATACTGAAAAGGACACATTCAATTTAAAAGACAATAACAATCATCGACAACAAAAGAATGCCAAGTCCAAGACTGTAAGTTTTAGTGGTTTTTCGAGTCAGAGCAGTGATGATGCAGAATCAGACGGTGAAAATGATATCGGTTCAAATCAATCAAGACATGTACAATTTAGATCATGAAACCATACACTTGTGTTACCATGGCACCTCTAAGGTTTCTAAATAAGAGTACACAGAGTCTCTTTCATAACTATGGATCTTATATATATTTTTTGGTATCCTTCATGAGTAGTACTCTTTGGATATCTGGTATTGTCATGATTCAATATTTGTTTCTTTTAAAGAAATAAATACAACAACAAAAAGGGGAAATTACATTGAAATCAATCTTTTCGTTATCTATTT</gDNA_template>
            <first_frame> S  R  R  V  Q  I  T  K  P  Y  R  I  R  M  R  M  R  A  V  R  M  I  K  T  M  F  I  T  I  K  K  L  T  L  I  K  M  F  S  T  V  M  R  M  M  E  Q  V  L  I  T  D  T  E  V  H  Q  D  L  Q  R  M  R  K  K  T  S  V  L  N  L  E  E  G  Y  Q  Q  N  L  S  N  G  V  R  N  Q  N  V  K  A  R  *  S  H  P  L  E  P  Y  A  Q  L  Q  D  V  K  A  R  *  N  G  L  K  V  L  S  Q  T  T  I  L  K  R  T  H  S  I  *  K  T  I  T  I  I  D  N  K  R  M  P  S  P  R  L  *  V  L  V  V  F  R  V  R  A  V  M  M  Q  N  Q  T  V  K  M  I  S  V  Q  I  N  Q  D  M  Y  N  L  D  H  E  T  I  H  L  C  Y  H  G  T  S  K  V  S  K  *  E  Y  T  E  S  L  S  *  L  W  I  L  Y  I  F  F  G  I  L  H  E  *  Y  S  L  D  I  W  Y  C  H  D  S  I  F  V  S  F  K  E  I  N  T  T  T  K  R  G  N  Y  I  E  I  N  L  F  V  I  Y   </first_frame>
            <second_frame>  A  E  E  F  R  *  R  S  L  I  E  *  E  *  G  *  E  Q  *  G  *  S  R  Q  C  S  L  Q  *  K  N  *  H  *  *  K  C  F  R  Q  *  *  G  *  W  S  K  F  *  L  R  I  R  K  Y  I  R  I  F  R  E  *  E  R  R  H  Q  S  *  T  W  R  R  D  T  N  K  I  C  Q  M  E  F  G  I  K  T  *  K  Q  D  K  V  I  L  S  S  H  T  L  N  F  K  T  *  K  Q  G  K  T  V  *  K  Y  Y  L  K  R  R  Y  *  K  G  H  I  Q  F  K  R  Q  *  Q  S  S  T  T  K  E  C  Q  V  Q  D  C  K  F  *  W  F  F  E  S  E  Q  *  *  C  R  I  R  R  *  K  *  Y  R  F  K  S  I  K  T  C  T  I  *  I  M  K  P  Y  T  C  V  T  M  A  P  L  R  F  L  N  K  S  T  Q  S  L  F  H  N  Y  G  S  Y  I  Y  F  L  V  S  F  M  S  S  T  L  W  I  S  G  I  V  M  I  Q  Y  L  F  L  L  K  K  *  I  Q  Q  Q  K  G  E  I  T  L  K  S  I  F  S  L  S  I  </second_frame>
            <third_frame>   Q  K  S  S  D  N  E  A  L  S  N  K  N  E  D  E  S  S  E  D  D  Q  D  N  V  H  Y  N  K  K  I  D  I  N  K  N  V  F  D  S  D  E  D  D  G  A  S  S  D  Y  G  Y  G  S  T  S  G  S  S  E  N  E  K  E  D  I  S  L  E  P  G  G  G  I  P  T  K  F  V  K  W  S  S  E  S  K  R  K  S  K  I  K  S  S  S  R  A  I  R  S  T  S  R  R  K  S  K  V  K  R  S  E  S  I  I  S  N  D  D  T  E  K  D  T  F  N  L  K  D  N  N  N  H  R  Q  Q  K  N  A  K  S  K  T  V  S  F  S  G  F  S  S  Q  S  S  D  D  A  E  S  D  G  E  N  D  I  G  S  N  Q  S  R  H  V  Q  F  R  S  *  N  H  T  L  V  L  P  W  H  L  *  G  F  *  I  R  V  H  R  V  S  F  I  T  M  D  L  I  Y  I  F  W  Y  P  S  *  V  V  L  F  G  Y  L  V  L  S  *  F  N  I  C  F  F  *  R  N  K  Y  N  N  K  K  G  K  L  H  *  N  Q  S  F  R  Y  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132169" stop="131636"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKSSDNEALSNKNEDESSEDDQDNVHYNKKIDINKNVFDSDEDDGASSDYGYGSTSGSSENEKEDISLEPGGGIPTKFVKWSSESKRKSKIKSSSRAIRSTSRRKSKVKRSESIISNDDTEKDTFNLKDNNNHRQQKNAKSKTVSFSGFSSQSSDDAESDGENDIGSNQSRHVQFRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="133887" PGL_stop="132756"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133887" e_stop="133612"/>
            <exon e_start="133505" e_stop="133294"/>
            <exon e_start="133166" e_stop="132977"/>
            <exon e_start="132894" e_stop="132756"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="0.978"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="0.972"/>
          <exon-intron don_prob="0.952" acc_prob="0.998" e_score="0.995"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.978">
            <gDNA_exon_boundary e_start="133887" e_stop="133612" e_length="276"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="133611" i_stop="133506" i_length="106"/>
          </intron>
          <exon e_serial="2" e_score="0.972">
            <gDNA_exon_boundary e_start="133505" e_stop="133294" e_length="212"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="133293" i_stop="133167" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="133166" e_stop="132977" e_length="190"/>
          </exon>
          <intron i_serial="3" don_prob="0.952" acc_prob="0.998">
            <gDNA_intron_boundary i_start="132976" i_stop="132895" i_length="82"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="132894" e_stop="132756" e_length="139"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133887" stop="133612"/>
              <exon start="133505" stop="133294"/>
              <exon start="133166" stop="132977"/>
              <exon start="132894" stop="132756"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U573098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTTTTTCAATGTGAACATTTCATGCATGACACTACTATTTATTCAAAGGATATAAACATTTTTTTTCCCCCTAGCTCCATTCTTCAAACATAAGGTGAAAATATATATCATATATTTTCTTTTCTAAATATCAATATGAATGGGCTAATGCATCAATGATATGAGTTGCCTCCCCTGTTTCCAGTCTAAGAAAACAAACGAGCCACCGGTACAGGACAAGCCTGTCCCGGTTGCTCGCCCTGCTAATGATCATCCTTCCTCCTCACCACATTTTG : AAAACAACTACAAAGCATCATGTGAGAATGGTAATAATAACAACAATCGCACTGATCACGGTAGCTCTCCTGTTGAAAATGGAGATAGCAGCAACGCGAAAACTTTCACATTCCGTGAGCTAGCAAGCGCAACAAAGAACTTCCGACAAGAATGCCTAATAGGGGAAGGTGGATTCGGAAGAGTCTTTAAGGGAACACTTCAAGGAGGAGAG : GTTGTGGCAGTAAAGCAACTAGACAGGACAGGAACACAAGGAAACAAGGACTTTCAAGTTGAAGTCTTATTGCTAAGCCTACTTAACCACCAAAATCTTGTTAATCTCATTGGATACTGTGCTGATGGAGATCAAAGAATGTTAGTCTATGAATACAGACCAATGGGCAGTCTTGCTGATCATCTAATTG : ATATTAAGGAGGATCAAAAGCCATTAGATTGGCAAAACAGAATGAAGATAGCCTCTGGTGCAGCAGAAGGACTTGAGTATCTACACGAAAAGGCCAACCCGCCAATCATTTATCGTGATCTCAGAACTACCAATATACT</gDNA_template>
            <first_frame> C  F  S  M  *  T  F  H  A  *  H  Y  Y  L  F  K  G  Y  K  H  F  F  S  P  *  L  H  S  S  N  I  R  *  K  Y  I  S  Y  I  F  F  S  K  Y  Q  Y  E  W  A  N  A  S  M  I  *  V  A  S  P  V  S  S  L  R  K  Q  T  S  H  R  Y  R  T  S  L  S  R  L  L  A  L  L  M  I  I  L  P  P  H  H  I  L  :  K  T  T  T  K  H  H  V  R  M  V  I  I  T  T  I  A  L  I  T  V  A  L  L  L  K  M  E  I  A  A  T  R  K  L  S  H  S  V  S  *  Q  A  Q  Q  R  T  S  D  K  N  A  *  *  G  K  V  D  S  E  E  S  L  R  E  H  F  K  E  E  R :   L  W  Q  *  S  N  *  T  G  Q  E  H  K  E  T  R  T  F  K  L  K  S  Y  C  *  A  Y  L  T  T  K  I  L  L  I  S  L  D  T  V  L  M  E  I  K  E  C  *  S  M  N  T  D  Q  W  A  V  L  L  I  I  *  L  :  I  L  R  R  I  K  S  H  *  I  G  K  T  E  *  R  *  P  L  V  Q  Q  K  D  L  S  I  Y  T  K  R  P  T  R  Q  S  F  I  V  I  S  E  L  P  I  Y  </first_frame>
            <second_frame>  V  F  Q  C  E  H  F  M  H  D  T  T  I  Y  S  K  D  I  N  I  F  F  P  P  S  S  I  L  Q  T  *  G  E  N  I  Y  H  I  F  S  F  L  N  I  N  M  N  G  L  M  H  Q  *  Y  E  L  P  P  L  F  P  V  *  E  N  K  R  A  T  G  T  G  Q  A  C  P  G  C  S  P  C  *  *  S  S  F  L  L  T  T  F  * :   K  Q  L  Q  S  I  M  *  E  W  *  *  *  Q  Q  S  H  *  S  R  *  L  S  C  *  K  W  R  *  Q  Q  R  E  N  F  H  I  P  *  A  S  K  R  N  K  E  L  P  T  R  M  P  N  R  G  R  W  I  R  K  S  L  *  G  N  T  S  R  R  R   : G  C  G  S  K  A  T  R  Q  D  R  N  T  R  K  Q  G  L  S  S  *  S  L  I  A  K  P  T  *  P  P  K  S  C  *  S  H  W  I  L  C  *  W  R  S  K  N  V  S  L  *  I  Q  T  N  G  Q  S  C  *  S  S  N  * :   Y  *  G  G  S  K  A  I  R  L  A  K  Q  N  E  D  S  L  W  C  S  R  R  T  *  V  S  T  R  K  G  Q  P  A  N  H  L  S  *  S  Q  N  Y  Q  Y  T </second_frame>
            <third_frame>   F  F  N  V  N  I  S  C  M  T  L  L  F  I  Q  R  I  *  T  F  F  F  P  L  A  P  F  F  K  H  K  V  K  I  Y  I  I  Y  F  L  F  *  I  S  I  *  M  G  *  C  I  N  D  M  S  C  L  P  C  F  Q  S  K  K  T  N  E  P  P  V  Q  D  K  P  V  P  V  A  R  P  A  N  D  H  P  S  S  S  P  H  F   : E  N  N  Y  K  A  S  C  E  N  G  N  N  N  N  N  R  T  D  H  G  S  S  P  V  E  N  G  D  S  S  N  A  K  T  F  T  F  R  E  L  A  S  A  T  K  N  F  R  Q  E  C  L  I  G  E  G  G  F  G  R  V  F  K  G  T  L  Q  G  G  E  :  V  V  A  V  K  Q  L  D  R  T  G  T  Q  G  N  K  D  F  Q  V  E  V  L  L  L  S  L  L  N  H  Q  N  L  V  N  L  I  G  Y  C  A  D  G  D  Q  R  M  L  V  Y  E  Y  R  P  M  G  S  L  A  D  H  L  I   : D  I  K  E  D  Q  K  P  L  D  W  Q  N  R  M  K  I  A  S  G  A  A  E  G  L  E  Y  L  H  E  K  A  N  P  P  I  I  Y  R  D  L  R  T  T  N  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0198A03.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133738" stop="133612"/>
                    <exon start="133505" stop="133294"/>
                    <exon start="133166" stop="132977"/>
                    <exon start="132894" stop="132758"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CINDMSCLPCFQSKKTNEPPVQDKPVPVARPANDHPSSSPHFENNYKASCENGNNNNNRTDHGSSPVENGDSSNAKTFTFRELASATKNFRQECLIGEGGFGRVFKGTLQGGEVVAVKQLDRTGTQGNKDFQVEVLLLSLLNHQNLVNLIGYCADGDQRMLVYEYRPMGSLADHLIDIKEDQKPLDWQNRMKIASGAAEGLEYLHEKANPPIIYRDLRTTNI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 81 chains have been computed
$ 
$ memory statistics:
$ 23936 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 1994 bytes was the average size of a spliced alignment
$ 18752 bytes predicted gene locations in total
$ 12 predicted gene locations have been stored
$ 1562 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 90 backtrace matrices have been allocated
$ 
$ date finished: 2009-11-12 19:20:36
-->
