<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:26:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312690" ref_strand="+" ref_description="SGN-U312690        Tomato 200607 #1 [160 ESTs aligned] arabidopsis/peptide: | Symbol: None | plastocyanin, similar to plastocyanin GI:1865683 from (Arabidopsis thaliana) | chr1:7042419-7043353 REVERSE | Aliases: F14O10.6, F14O10_6(evalue: 4e-49, score=191) genbank/nr: gi|19300|emb|CAA32121.1| unnamed protein product [Lycopersicon esculentum] >gi|130271|sp|P17340|PLAS_LYCES Plastocyanin, chloroplast precursor (evalue: 2e-59, score=232)">
      <seq>ctcacatattaaaaccccatcaactcctactccccttttcttgattccaaattttcaatcacaaaagcaacaacaagaagcatattaataaacaatggccactgttacctctgctgctgttgctattccatctttcactggccttaaggctggtgcttcatcatcttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacattcaagaacaatgcagggttcccacacaacgtcgtatttgatgaagatgaaatcccagctggtgtggatgctagtaagatttccatgtctgaagaggatcttctgaatgcagcaggagagacatacagtgtcactttgagtgagaaaggaacttacactttctactgtgcacctcaccagggagctggaatggttggcaaagttactgtcaactaatttttttcacacctctgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttctctttttgaggtgtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaataccagcttttttggactgtaaaaaaaaaaaaaaaaaaaaaaaacaaccttcctcctgatggtaaaataacatacccgtttcagttgcttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2092" stop="3548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2392" g_stop="3248" g_length="857"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="853" r_length="853" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="854" polyA_stop="879"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U312690" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U312690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2392" e_stop="3248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAA</genome_strand>
        <mrna_strand>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAA----AAAAAAAAAAAAAAAAAAAAAACAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333835" ref_strand="+" ref_description="SGN-U333835        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | plastocyanin, similar to plastocyanin GI:1865683 from (Arabidopsis thaliana) | chr1:7042419-7043353 REVERSE | Aliases: F14O10.6, F14O10_6(evalue: 6e-19, score=92) genbank/nr: gi|19300|emb|CAA32121.1| unnamed protein product [Lycopersicon esculentum] >gi|130271|sp|P17340|PLAS_LYCES Plastocyanin, chloroplast precursor (evalue: 9e-30, score=134)">
      <seq>gcacgagggccactgttacctcttttgctgttgctattccatctttcacgagccttaaggctggtgcttcactccgttccagagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggcgtctttgaaagatgtcggtgctgtggttgctgccaccgctgttagcgcgatgcttgctagcaatgccatggcacttgaagtgttgcttggtggtgatgatgggagtctagcttttattcctgggaacttcagcgttagtgctggtgagaaaattacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2183" stop="3083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2481" g_stop="2783" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U333835" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>303</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2481" e_stop="2783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACAT</genome_strand>
        <mrna_strand>GCACGAGGGCCACTGTTACCTCTTTTGCTGTTGCTATTCCATCTTTCACGAGCCTTAAGGCTGGTGCTTCACTCCGTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333839" ref_strand="-" ref_description="SGN-U333839        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | plastocyanin, similar to plastocyanin GI:1865683 from (Arabidopsis thaliana) | chr1:7042419-7043353 REVERSE | Aliases: F14O10.6, F14O10_6(evalue: 2e-38, score=155) genbank/nr: gi|19300|emb|CAA32121.1| unnamed protein product [Lycopersicon esculentum] >gi|130271|sp|P17340|PLAS_LYCES Plastocyanin, chloroplast precursor (evalue: 2e-46, score=188)">
      <seq>tattttccaaagttagcaccggtgcatccgctaaggtggcagctgccccagttgccagattgactgtgaaggggtttttgaaaaatgtcggtgctgtggttgctgcccccgctgttagggcgatgcttgctagcaatgccatggcactttaagtgttggttggtggtgatgatgggagtttagcttttatttctggaaacttcagggttaggggtggtgagaaaattacattcaagaacaatgcagggttcccccacaacgttgtatttgatgaaaatgaaatcccagctggggtggatggtagtaaaatttccatgtttgaaaaggattttttgaatgcagcaggaaaaacatacagggtccctttgagtgaaaaaggaacttacacttttttttgtgcccctccccagggaggtggaatggttggcaaagttactgtcaaataattttttttacccctttgttttgtaaaagttgatttgagttcccatcaatttcaacattttccttttagtattgcccttttttttttgaggggtaatgaaaactcaggaaattaaagttgcatatgtatccatgtaatgtcattttgtgattaaaaccagcttttttgggctgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="2254" stop="3471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2553" g_stop="3169" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="617" r_length="617" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="622" polyA_stop="663"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U333839" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333839" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2553" e_stop="3169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACT</genome_strand>
        <mrna_strand>TATTTTCCAAAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGGGTTTTTGAAAAATGTCGGTGCTGTGGTTGCTGCCCCCGCTGTTAGGGCGATGCTTGCTAGCAATGCCATGGCACTTTAAGTGTTGGTTGGTGGTGATGATGGGAGTTTAGCTTTTATTTCTGGAAACTTCAGGGTTAGGGGTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCCCACAACGTTGTATTTGATGAAAATGAAATCCCAGCTGGGGTGGATGGTAGTAAAATTTCCATGTTTGAAAAGGATTTTTTGAATGCAGCAGGAAAAACATACAGGGTCCCTTTGAGTGAAAAAGGAACTTACACTTTTTTTTGTGCCCCTCCCCAGGGAGGTGGAATGGTTGGCAAAGTTACTGTCAAATAATTTTTTTTACCCCTTTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTTTTTTTTTGAGGGGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAAAACCAGCTTTTTTGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333163" ref_strand="+" ref_description="SGN-U333163        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | phospholipase D delta / PLD delta (PLDDELTA), identical to phospholipase D delta SP: Q9C5Y0 from (Arabidopsis thaliana); supporting cDNA gi:11761141:dbj:AB031047.1: | chr4:16955538-16960174 REVERSE | Aliases: None(evalue: 4e-42, score=168) genbank/nr: gi|22795060|gb|AAN05432.1| phospholipase D delta isoform 1b [Gossypium hirsutum](evalue: 2e-46, score=188)">
      <seq>cttttttccaccaccgttggctacggcggagacaccaaattttgttcatttttctcccttcccgtcggttaaccactccgccatagccggcggttacacgattcaccttcaacttttaatatatcacattgcctcaaggattgtttttgttttgtgtgtataaatttgtgtgtgtatatatatatatatatatcaatggcggatgagaattgtgaaaatgtggtatatcttcatggagactttgatttgaagattatagaagctcgaaggttacctaacatggatttagtaaccgaacgtctcagtcgatgctttacagctttagatatctgccggaaaccgtttactcgacggagaaggaaaggtcatcaccggaaaatcatcaccagtgatccgtatgtgacggtttgcttaaccggcgctactgtggcgcgtacgcgcgtgatatcgaattgtcaggatcctgtttggaacgagcattttaaaatcccgcttgctcatccggtttcggttgtagagtttctggttaaggataatgatgtattcggtgcggattatatcggagttgctaccgtgctggctgagaagatcaagtccggtgagctaattgatgattggtttcctataattggaccttatggaaaacctccgaaagctgattgtgcaattcggctgcaaatgagattcatacattgtgatggtaatccggcttataacgggcgtatatcagaagattttggcctgaaagcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="11456" stop="10078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11156" g_stop="10378" g_length="779"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="752" r_length="752" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-U333163" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>779</cumulative_length_of_scored_exons>
        <coverage percentage="1.036" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333163" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11156" e_stop="10378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTTCCACCACCGTTGGCTACGGCGGAGACACCAATTTTTGTTCATTTTCCCCCCTTCCCGTCGGTTAACCACTCCGCCATAGCTGGCGGTTACACGATTCACCTTCAACTTTTTATATATCACATTGCCTCAAGGATCGTTTTTGTTTTGTGTGTGTAAATTTGTGTGTGTGTATATATATATATATATATATATATATATATATATATTATATATCAATGGCGGATGAGAATTGTGAAAATGTGGTATATCTTCATGGAGACTTTGATTTGAAGATTATAGAAGCTCGAAGGTTACCTAACATGGATTTAGTAACCGAACGTCTCAGTCGATGCTTTACAGCTTTAGATATCTGCCGGAAACCGTTTACTCGCCGGAGAAGGAAAGGTCATCGCCGGAAAATCATCACCAGTGATCCGTATGTGACGGTTTGCTTAACCGGCGCTACTGTGGCGCGTACGCGCGTGATATCGAATTGTCAGGATCCTGTTTGGAACGAGCATTTTAAAATCCCGCTTGCTCATCCGGTTTCGGTTGTAGAGTTTCTGGTTAAGGATAATGATGTATTCGGTGCGGATTATATCGGAGTTGCTACCGTGCTGGCTGAGAAGATCAAGTCCGGTGAGCTAATTGATGATTGGTTTCCTATAATTGGACCTTATGGAAAACCTCCAAAGCCTGATTGTGCAATTCGGCTGCAAATGAGATTCATACATTGTGATGGTAATCCGTCTTATAACGGCGGTATATCAGAAGATTTTGGCCTGAAAGCGAG</genome_strand>
        <mrna_strand>CTTTTTTCCACCACCGTTGGCTACGGCGGAGACACCAAATTTTGTTCATTTTTCTCCCTTCCCGTCGGTTAACCACTCCGCCATAGCCGGCGGTTACACGATTCACCTTCAACTTTTAATATATCACATTGCCTCAAGGATTGTTTTTGTTTTGTGTGTATAAA-TT-TGTGTGTG------------------------TATATATATATA-TATATATCAATGGCGGATGAGAATTGTGAAAATGTGGTATATCTTCATGGAGACTTTGATTTGAAGATTATAGAAGCTCGAAGGTTACCTAACATGGATTTAGTAACCGAACGTCTCAGTCGATGCTTTACAGCTTTAGATATCTGCCGGAAACCGTTTACTCGACGGAGAAGGAAAGGTCATCACCGGAAAATCATCACCAGTGATCCGTATGTGACGGTTTGCTTAACCGGCGCTACTGTGGCGCGTACGCGCGTGATATCGAATTGTCAGGATCCTGTTTGGAACGAGCATTTTAAAATCCCGCTTGCTCATCCGGTTTCGGTTGTAGAGTTTCTGGTTAAGGATAATGATGTATTCGGTGCGGATTATATCGGAGTTGCTACCGTGCTGGCTGAGAAGATCAAGTCCGGTGAGCTAATTGATGATTGGTTTCCTATAATTGGACCTTATGGAAAACCTCCGAAAGCTGATTGTGCAATTCGGCTGCAAATGAGATTCATACATTGTGATGGTAATCCGGCTTATAACGGGCGTATATCAGAAGATTTTGGCCTGAAAGCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341986" ref_strand="+" ref_description="SGN-U341986        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT3G23880.1 | Symbol: None | F-box family protein, contains F-box domain Pfam:PF00646 | chr3:8621999-8623169 REVERSE | Aliases: F14O13.6 (evalue: 9e-10, score=61.6) genbank/nr: gi|47824946|gb|AAT38720.1| putative F-Box protein [Solanum demissum] (evalue: 9e-21, score=104)">
      <seq>gtttcctctgtaatggagtcgccgccgccgccgccgatgaaaaccacgaagcgcagagcagcagcaacaacgtcaattactggattaaccattgataattcagttcttcctatagaattaatagttgaaatactcataagattgcctgtaaaaacattgctgaagatgagatctgtttcaaaatcctggagttctctcatctcaactcccgaatttgtcaaagcacatgtaaaattttcagccaataatcgagaatttgctcaccacaggcttcttagtatcaggtcaggtactcacactcacgacgacggacgtactagtagatggaaaaatttccgcacatattctcttaatgcaatcctgtatggagaatctccctgtttacctgttgagcttcataattttggtataagttattatgttttgtgttcatgtgatggattgttcgttatttcaaaaacctggtataataatgacattgaggatctgtttctatggaatccgtctattagaaagttgagtaaacttccttattcaggaattgatgtgttcaatcgtagatttgcttatggatttggttatattgaatctcaaaatgattaccatattgttgaaattgtggcaagtaaacctagttatctcattgctgatattagtgtttatagtttaagaaataattcgtggaaaaccattcatgagttcccaagtatctctttgcctgaaaatgttaaatttattaaaggaaagttccattggatcactggtggtggtagtggtagtaacgcgacatggttcaaccccggagatgaggggtttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="23634" stop="25050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23934" g_stop="24750" g_length="817"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="817" r_length="817" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U341986" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U341986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23934" e_stop="24750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCTCTGTAATGGAGTCGCCGCCGCCGCCGCCGATGAAAACCACGAAGCGCAGAGCAGCAGCAACAACGTCAATTACTGGATTAACCATTGATAATTCAGTTCTTCCTATAGAATTAATAGTTGAAATACTCATAAGATTGCCTGTAAAAACATTGCTGAAGATGAGATCTGTTTCAAAATCCTGGAGTTCTCTCATCTCAACTCCCGAATTTGTCAAAGCACATGTAAAATTTTCAGCCAATAATCGAGAATTTGCTCACCACAGGCTTCTTAGTATCAGGTCAGGTACTCACACTCACGACGACGGACGTACTAGTAGATGGAAAAATTTCCGCACATATTCTCTTAATGCAATCCTGTATGGAGAATCTCCCTGTTTACCTGTTGAGCTTCATAATTTTGGTATAAGTTATTATGTTTTGTGTTCATGTGATGGATTGTTCGTTATTTCAAAAACCTGGTATAATAATGACATTGAGGATCTGTTTCTATGGAATCCGTCTATTAGAAAGTTGAGTAAACTTCCTTATTCAGGAATTGATGTGTTCAATCGTAGATTTGCTTATGGATTTGGTTATATTGAATCTCAAAATGATTACCATATTGTTGAAATTGTGGCAAGTAAACCTAGTTATCTCATTGCTGATATTAGTGTTTATAGTTTAAGAAATAATTCGTGGAAAACCATTCATGAGTTCCCAAGTATCTCTTTGCCTGAAAATGTTAAATTTATTAAAGGAAAGTTCCATTGGATCACTGGTGGTGGTAGTGGTAGTAACGCGACATGGTTCAACCCCGGAGATGAGGGGTTTG</genome_strand>
        <mrna_strand>GTTTCCTCTGTAATGGAGTCGCCGCCGCCGCCGCCGATGAAAACCACGAAGCGCAGAGCAGCAGCAACAACGTCAATTACTGGATTAACCATTGATAATTCAGTTCTTCCTATAGAATTAATAGTTGAAATACTCATAAGATTGCCTGTAAAAACATTGCTGAAGATGAGATCTGTTTCAAAATCCTGGAGTTCTCTCATCTCAACTCCCGAATTTGTCAAAGCACATGTAAAATTTTCAGCCAATAATCGAGAATTTGCTCACCACAGGCTTCTTAGTATCAGGTCAGGTACTCACACTCACGACGACGGACGTACTAGTAGATGGAAAAATTTCCGCACATATTCTCTTAATGCAATCCTGTATGGAGAATCTCCCTGTTTACCTGTTGAGCTTCATAATTTTGGTATAAGTTATTATGTTTTGTGTTCATGTGATGGATTGTTCGTTATTTCAAAAACCTGGTATAATAATGACATTGAGGATCTGTTTCTATGGAATCCGTCTATTAGAAAGTTGAGTAAACTTCCTTATTCAGGAATTGATGTGTTCAATCGTAGATTTGCTTATGGATTTGGTTATATTGAATCTCAAAATGATTACCATATTGTTGAAATTGTGGCAAGTAAACCTAGTTATCTCATTGCTGATATTAGTGTTTATAGTTTAAGAAATAATTCGTGGAAAACCATTCATGAGTTCCCAAGTATCTCTTTGCCTGAAAATGTTAAATTTATTAAAGGAAAGTTCCATTGGATCACTGGTGGTGGTAGTGGTAGTAACGCGACATGGTTCAACCCCGGAGATGAGGGGTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315576" ref_strand="+" ref_description="SGN-U315576        Tomato 200607 #1 [39 ESTs aligned] arabidopsis/peptide: | Symbol: None | thioredoxin family protein, low similarity to thioredoxin (TRX) (Fasciola hepatica) GI:6687568; contains Pfam profile PF00085: Thioredoxin | chr1:28552680-28554313 REVERSE | Aliases: T23E18.2, T23E18_2(evalue: 1e-107, score=386) genbank/nr: gi|2582822|emb|CAA71103.1| CDSP32 protein (Chloroplast Drought-induced Stress Protein of 32kDa) [Solanum tuberosum] (evalue: 8e-166, score=586)">
      <seq>tcaatccaatagtgtcacaacctcatatcaaactacatttccatttctccctttcttctaaacttgacatccctcttccttttgtggctattcttgaaaaaaaaaatctttaatctatggctactctcacaaattttttgctcaaaccctctccaaatctagcttcaattacaaaaattagcccttcactttactccaatttcccttttgagaaatccaaacaatcaattttcaagaacctcaaaacaaacaagcccttattgattacaaaggcaacagcagcacctgatgttgagaaaaaagtggctaaaagtgaaagagtacaaaaggttaatagtatggaggaattggatgaagcattaaaaaatgcgaaaaatcgactagttgtggttgaatttgcaggcaaagatagtgaacgttcgaaaaatatttatccttttatggtgaatttaagtaagacatgtaacgatgtcgatttcttgttggtgatcggagatgaaacggagaagactaaggcactctgccggagagaaaagattgacaaggtaccacatttcaacttctacaaaagcatggagaagatccacgaggaagaaggcattggcccggaccaacttgccggtgatgtactctactacggtgacagccactccgaagtagtgcagctccacagcagagaagacgttgaaaaggtaatccaagaccacaaaatcgataaaaaattaatagtcctcgacgttggattgaagcattgtggaccatgtgtgaaagtttatccaacagtgattaagctatcgaaacagatggctgatacagtcgtgttcgcgagaatgaatggtgatgagaatgatagttgtatgcagtttttgaaagacatggatgttattgaagtgcctacgtttttgtttataagagatggtgaaatttgtggaaggtatgttggttctgggaaaggtgaacttattggagaaattcttagatatcaaggagttagggttacttattaatattgttgaagtcatattatatacttaattgggacatttgattttgtgttaaatgattatggactagttaagtggggaaaaaaccaagttgacttggttgagatttaagttttggtatgtttagtttgtaaaactatgttgtaagtgatcaaagattgtcatgataattgattttgaatgagaatgttattagccttgatttagttgaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="27181" stop="29838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27481" g_stop="28025" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28868" g_stop="29537" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="1215" r_length="670" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1216" polyA_stop="1236"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U315576" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1215</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U315576" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27481" e_stop="28025"/>
          <exon e_start="28868" e_stop="29537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAGGTAATTTTAGAAATTCACACGTATTATTACGTCTGTTTCAATTTATGTGACGATAGTTTAAAAAAATAATTACTTGTGGATCTTTATGTTACCTGCATTGAAATGGATGGAGATATACATGAAATATAACTTAATTAGTAAAAAGATTGGTGTATATCTAATATATATAATGGATTGAGTATGACTAGATCTAGCTTTCGATAAGAGGCGATTTCAATATTTAGACTTAGATCCATAGATAGGTTCAATTTTGAAATCATAACTTCAAAACTATAATATTGATTAAAATTTTAGCGATTTTTGTATCACTAAAAAGAAAGTGTGAATTTTATTTTTCTGTAAATTTTCATATTAATTCTCAGAAAATTCTCCATGTAATTCATAGTTTTTTTTGTAGTGTATATATTTCGCATTATAATACTAAGTATAGTGAATCCATATCAAAGAAAGCTACAACCCCTTCTTAAGATAATCTCTTTGATAACCAGATGTGGATCGAGTATTTGAAATTTATTGGTTCAAAACTTGAAGTTTATATGTATAATTTACTAAGTGAATTAAATATATAGAATGGGCTAAATTAGTTACTAGTTTCGATTGAACCCGTATTAAACACACTATGACCCTTACTATCTTGCTACAACTTCCACCCATATAACGTGCACGATCTGATAATAGTAGGGAAAAAGGTCTGATATATATACCCCTTAACTTTGTCATGAGCTGATATACCCCTCGTTATGAAAGTGACTCATATATAACCCTATTGTTATCAATTACGATCAAACTCAAAGATAAATGGAATATTTTAGCTAATATAAGCTCTCTTTTTTTCCCAATAGGTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</genome_strand>
        <mrna_strand>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320083" ref_strand="+" ref_description="SGN-U320083        Tomato 200607 #1 [12 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28551276-28552505 FORWARD | Aliases: T23E18.1, T23E18_1(evalue: 9e-27, score=117) genbank/nr: gi|19911575|dbj|BAB86891.1| syringolide-induced protein 14-1-1 [Glycine max](evalue: 7e-30, score=134)">
      <seq>gaatcatttcaacaccaaaaaagctaagatatatttttgttcttcatatcaacaccaacaaaaaagtacaaaaatggagaaggaaaaaccaagcaagccaaagaaaaacatgattttgaaatttttaccaaaagcagcagcagcaaccgttatattccaaaaccacccttttagtccaggtagagataaaagattacatcataatcacaaaggattttctggtccaattatatctataattccagctgaagcgagaattagaaaatcgaatagcgaaacaaaggaagaagaaccaacatcaccaaaagtttcgtgcattggtcagatcaaacagaggaagaaactcaataaacccaggaaaacggaacgcccaaaatcactcgaaaaaaaatcatccaattttaaaaatatctttcaaagacggagaaaaaccgatgttgataaaaatgaaacaaatatgagatgcgaggtacaaaacagagcaccaccctgtttgagtcaaatgaggaaatatgctagtggtcgtgaaggtaatttatcgaatttcgattggaaaaacgtgcagattacacctgatgatcatcggaaatattactccgatgatgatagagatgattatcatgaagctgaagatgaagatgaggtaataattccattttcagctccaattttaataggaagagataatagaccaaattttactttggagccaaaaaaggaaattaatttatggaaaagaagaactatgactaaaccaaatcctcttcaattgaagaaataagttttgtttagttgatttaagcttagaattagtttacaaatcatcatgttgtaaactatgatgcaagtgtaacaatattttcaaagaattcaactattcaagtaatatagtttagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="30763" stop="32264"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31062" g_stop="31963" g_length="902"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="902" r_length="902" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U320083" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31062" e_stop="31963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCATTTCAACACCAAAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTCAAAGAATTCAACTATTCAAGTAATATAGTTTAGTTTAAC</genome_strand>
        <mrna_strand>GAATCATTTCAACACCAAAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTCAAAGAATTCAACTATTCAAGTAATATAGTTTAGTTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344566" ref_strand="+" ref_description="SGN-U344566        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, contains Pfam profile: PF01535 PPR repeat | chr1:7029619-7031525 FORWARD | Aliases: F14O10.10, F14O10_10(evalue: 1e-79, score=294) genbank/nr: gi|18394846|ref|NP_564110.1| expressed protein [Arabidopsis thaliana] gi|25513639|pir||F86336 F14O10.10 protein - Arabidopsis thaliana gi|9558596|gb|AAF88159.1| Contains similarity to a hypothetical protein T3P18.15 gi|5454201 from Arabidopsis thaliana BAC T3P18 gb|AC005698 and contains multiple PPR PF|01535 repeats gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana] gi|17386104|gb|AAL38598.1| At1g20300/F14O10_8 [Arabidopsis thaliana](evalue: 8e-78, score=294)">
      <seq>aatcggccgaattgagtttttttttcttcctgattttaattaaataaaataaattattatagggtttaaaacaagtgttgggtggggtttgggggatggtagataggtcagtacttagtaattagcagcaaattactgaacacagctgaatccatggccgtcacgaaatctatggtacgcttgaatttctgccgctatttcctcagttcattctcttctcaaagcaaatttaaattcttcagctctgtttcaacctcaaaaatcgccctctgcggcgacgtcggcgacggtaaagatgaaaatgggggacccatatgccgaactgaggttttatctaaagaagaagctcaaatagctgaaaagtttcattctttaatcaaagaccatcatcggaaaaaccctacagctactcctacttcaattcccttaaaccctaacatcactttcccaactctctccttcgatttttctagtatctccgataaccggtccatttccccgccggtcgtcagccgggttatcgagaaatgcgggtcggttcggcatggtatcccattttcacaggctctagctttcttcaattgggctgcagctcgtgattcgtgtggatctttcttaaaccccgagccttacaatgaaatgattgatcttgctggaaaggtacgtcaatttgatgttgcttggcatttgattgattcaatgaaactgaaaaatatcaaaatcccaattgaaactttttcgattttgattcgtcgttatgttcgtgctggtcttgcttccgaagctgttcatacgttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="39873" stop="38483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39566" g_stop="38783" g_length="784"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="799" r_length="783" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-U344566" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>784</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344566" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39566" e_stop="38783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTTCTTTAATGATTTTAATTAAATAAAATAAATTATTATAGGGTTTAAAAGAAGTGTTGGGTGGGGTTTGGGGGATGGTAGATAGGTCAGTACTTAGTAATTAGCAGCAAATTACTGAACACAGCTGAATCCATGGCCGTCACGAAATCTATGGTACGCTTGAATTTCTGCCGCTATTTCCTCAGTTCATTCTCTTCTCAGAGCAAATTTAGATTCTTCAGCTCTGTTTCAACCTCAGAAATCGCCCTCTGCGGCGACGTCGGCGACGGTAAAGATGAAAATGGGGGACCCATATGCCGAACTGAGGTTTTATCTAAAGAAGAAGCTCAAATAGCTGAAAAGTTTCATTCTTTAATCAAAGACCATCATCGGAAAAACCCTACAGCTACTCCTACTTCAATTCCCTTAAACCCTAACATCACTTTCCCAACTCTCTCCTTCGATTTTTCTAGTATCTCCGATAACCGGTCCATTTCCCCGCCGGTCGTCAGCCGGGTTATCGAGAAATGCGGGTCGGTTCGGCATGGTATCCCATTTTCACAGGCTCTAGCTTTCTTCAATTGGGCTGCAGCTCGTGATTCGTGTGGATCTTTCTTAAACCCCGAGCCTTACAATGAAATGATTGATCTTGCTGGAAAGGTACGTCAATTTGATGTTGCTTGGCATTTGATTGATTCAATGAAACTGAAAAATATCAAAATCCCAATTGAAACTTTTTCGATTTTGATTCGTCGTTATGTTCGTGCTGGTCTTGCTTCCGAAGCTGTTCATACGTTTA</genome_strand>
        <mrna_strand>TTTTTTTTTC-TTCCTGATTTTAATTAAATAAAATAAATTATTATAGGGTTTAAAACAAGTGTTGGGTGGGGTTTGGGGGATGGTAGATAGGTCAGTACTTAGTAATTAGCAGCAAATTACTGAACACAGCTGAATCCATGGCCGTCACGAAATCTATGGTACGCTTGAATTTCTGCCGCTATTTCCTCAGTTCATTCTCTTCTCAAAGCAAATTTAAATTCTTCAGCTCTGTTTCAACCTCAAAAATCGCCCTCTGCGGCGACGTCGGCGACGGTAAAGATGAAAATGGGGGACCCATATGCCGAACTGAGGTTTTATCTAAAGAAGAAGCTCAAATAGCTGAAAAGTTTCATTCTTTAATCAAAGACCATCATCGGAAAAACCCTACAGCTACTCCTACTTCAATTCCCTTAAACCCTAACATCACTTTCCCAACTCTCTCCTTCGATTTTTCTAGTATCTCCGATAACCGGTCCATTTCCCCGCCGGTCGTCAGCCGGGTTATCGAGAAATGCGGGTCGGTTCGGCATGGTATCCCATTTTCACAGGCTCTAGCTTTCTTCAATTGGGCTGCAGCTCGTGATTCGTGTGGATCTTTCTTAAACCCCGAGCCTTACAATGAAATGATTGATCTTGCTGGAAAGGTACGTCAATTTGATGTTGCTTGGCATTTGATTGATTCAATGAAACTGAAAAATATCAAAATCCCAATTGAAACTTTTTCGATTTTGATTCGTCGTTATGTTCGTGCTGGTCTTGCTTCCGAAGCTGTTCATACGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U316771" ref_strand="+" ref_description="SGN-U316771        Tomato 200607 #1 [25 ESTs aligned] arabidopsis/peptide: | Symbol: None | oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to prolyl 4-hydroxylase, alpha subunit, from Gallus gallus (GI:212530), Rattus norvegicus (GI:474940), Mus musculus (SP:Q60715); contains PF03171 2OG-Fe(II) oxygenase superfamily domain | chr1:7020742-7023057 REVERSE | Aliases: F14O10.12, F14O10_12(evalue: 1e-88, score=323) genbank/nr: gi|18394842|ref|NP_564109.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana] gi|25513547|pir||D86336 F14O10.12 protein - Arabidopsis thaliana gi|9558598|gb|AAF88161.1| Contains similarity to a prolyl 4-hydroxylase alpha subunit protein from Gallus gallus gi|212530. [Arabidopsis thaliana](evalue: 8e-87, score=323)">
      <seq>ctatacgattttctcaatttctccgattcattttttccgttcgacgaactctcaccgggaaaagcaactccattgccgggaaatactcttatttgataaacgaatgctgcattaaatttgatcaatctagggtttcggtgaagattgtagtgaagcaatggcgaaggggaggttgaatcggcatcaagggaagagatcatcgacagtggttttagtgctttcgatgcttctgatgctaacagttgtgcttctaatgcttctcgctcttggcatttttaatcttcctgttggttctgatgatgagtcgtcttcgactgttcaggatcacatcaagttcaagcggttcaacttagatataggggaaggtgacggactggggaaaagaggggaacaatggacagagatcttatcgtgggagcctcgtgcatttgtttaccacaatttcttgtccaaggaagaatgtgaatacttgataaatcaagctaagcctcacatggtgaagtcatcagttgttgatagcaagaccggtcagagtaaagatagcagggttcgtacaagttcgggaatgtttttgaggagggggcgagataaaattatcagaaatattgagaagagaatagcagattatacattcattcctgcagaacatggagaaggtctacaagtcttacattatgaagttggacagaagtatgagcctcattatgactacttccttgatgacttcaacaccaaaaatgggggccaacgtatagctactcttctcatgtatctatcagatgttgaagaaggaggtgagactgtttttccagcagcaaagggaaacttcagttctagtcctgggtggaatgagttgtcagaatgtgccaaagggggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="43211" stop="46799"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43511" g_stop="43867" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="357" r_length="357" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136">
            <donor d_prob="0.905" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44004" g_stop="44094" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="448" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44848" g_stop="44945" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="546" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559">
            <donor d_prob="0.505" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="45505" g_stop="45602" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="644" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.525" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46137" g_stop="46266" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="645" r_stop="774" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="46267" i_stop="46395" i_length="129">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="46396" g_stop="46499" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="775" r_stop="878" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U316771" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>878</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U316771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43511" e_stop="43867"/>
          <exon e_start="44004" e_stop="44094"/>
          <exon e_start="44848" e_stop="44945"/>
          <exon e_start="45505" e_stop="45602"/>
          <exon e_start="46137" e_stop="46266"/>
          <exon e_start="46396" e_stop="46499"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATACGATTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATATGTACGTATATTGTTTTGGACTTCAGAGAATTGATTAATTGCACTGATTTTGTATGCTTAGAGTATGTTATAACTGTTACTGCCGATCCAATGAGTTTTTGTTGGGCTGTATTTCTGAGTAAAAAATTCATTTGCAGAGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTGGTGAGCATGTCACTACTCTTAGACATTTTTGGTCTGATTTTGTTAATTAGTTCTTGTCTAAGGAATGGTCAGCAAAATATCCATAGAGGTGAGCTAAGGTTTTGTTGTGGTTACATCACATTAGTTTGGTATTTGGTTAGAGATTTATATGCTCATGTAAGGGTGGGATATTGGGAGCCTCTAGTTTTATAGTATTACTCATTTGCATTGATGTTTCATTATTTAGTATGAGGATATCCATAGCAGTGAGCTATTGCTGTTACATTAAATTAGTTATGGTATTTGGTTAAGGATTTGTATGCTCGTGTACGGTGAGATCTAGTGAACTTGCCTGAACATGATTGGTGCGATCACACTAGTAGCAAGAGATGCAGATGGTGACAATGAGAGGTTGTCACTGAGCACTCCGAGTCATGTGGGAAAAGAGGTCAAATGGAAAGGTAAAGTCATACACTTGTTTGGCTCCATTTTGAGTATAGCTCACTTTTAAACATCTGTTTGGGGAACGGGGAAACACCCGTGCTAATTTTATAGAACCACTCATTTGTATGAAAGGTTAGTTATTTAGTGTTAGAATAGACCGACCAAAATAAATCATAATGGTTCCAAAGTATTCATATTGTATACCCGACCAATTTGAGGCTGGACGTGTGTTAGATCATACTAATTATAACTATGTTTTCTTTTGTGATTCACTAAGGTATTGTAAAATGAAAAAGTTTGAATGTGACAATGTGGTTTGCATTTCGACAGTCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAGGTTTGTAGTTGGTGATTTCTTTACATTCACTGATTGCCAGTTTGCCACAACAAGCATCTTTGAAGTCTTTTCATCATTCTATAATAATTTTCTTTTAGTAGCTTGGTTTAGAGACTTAATTCTTTTTTTCCCTTCATTCCAAACCAATATCTGATACTATTTCAGTTTGAGGACACCTCAAGATGTCTGCCTCCATCCTATTTAATAGTACTTTATGCAACTTCTACACAGAATAAGAACTACATTTTAGCTATGTTTTCCTTAAGGTATTAACTTTTCGATTGCTACTTACTGTTTTCCACTGCTATCAGAAAGTAGACAAATCTTACTAACATTTTTTATGCTGGGTTAAATGGTGTCATCTAAAGTAGGATGGAGGAAGGAATAGTTTTTTCCTATGTTGCTTGGACTCTTCAAAAATGAAATCGAATGTTTGTCGGATCCTTCAGAAGTAGTGCATTTTTGTAAGATACGACATCTGAGCGGCATCATTTTTTGGAGAGTCCGATCAACATAGGTTTTTTCTATGGACTGATGTTCTGACAGTTTCATATAACAGGGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAGGTATGAGGACTGTGTGATACCATACAAAAATCATAGCGTATGAACTCTTTGTTGTCGTTATTATTGTCATTGTCATTGTCATCCACGAGTTCTTGTTAAAAAATTATAAATGGGAAACATTCTCCGATTACGTTCCTTATTTGTTTTTATAAGAAGCAATGGCTGCAAACTTAAAACCTCTTAAGTAGTAATCATTAAATTTCAAAATTTTCTATTACTTTAATTTCGAAGGTTTAGAAGTTAAGCTTAACTCAAGTGAGGTTTTCATTTTATTCATGTTAGTTGCAGAACTTAAATGTATATTGTCCCTGTCTAGAGATATCTTAGGCTGTTCTTTTGCCTGGCTTTCAAAATATGATATTACTAGTTTGATTTTCCTCTTCACAAAACAAAAACGCGAGTGAGTGATTCTATTTTTGTTTATCAGATTCACTAATGAAGATTGATTCGCAGACGTGTATCCATCCTCTGTTAGGATCATAATTATGCTTTACTTCCCTTGTGAATTCCCTGATTAGCTTAGCTTGTTTACAGAACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCTGTAAGGCTTATAATTCCTCAAATAATTATATGATAAATATGGTAGAAGTTCTGATTTTTCTCTAAGTTGCATCCATAATGATGAATACACAGATTGGTTGTATAATTTGCTTATCTGGGGCATATGCAGATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGCAAAGGGAAACTTCAGTTCTAGTCCTGGGTGGAATGAGTTGTCAGAATGTGCCAAAGGGGGCC</genome_strand>
        <mrna_strand>CTATACGATTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT........................................................................................................................................AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCT.................................................................................................................................ATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGCAAAGGGAAACTTCAGTTCTAGTCCTGGGTGGAATGAGTTGTCAGAATGTGCCAAAGGGGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331249" ref_strand="+" ref_description="SGN-U331249        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pseudouridine synthase family protein, contains Pfam profiles: PF00849 RNA pseudouridylate synthase, PF01479: S4 domain | chr1:28545752-28548744 FORWARD | Aliases: T4O12.210, T4O12_210(evalue: 5e-08, score=54.7) genbank/nr: gi|18855035|gb|AAL79727.1| putative ribosomal large subunit pseudouridine synthase [Oryza sativa](evalue: 7e-07, score=57)">
      <seq>agactgcagtgatgaagaataccacttacaagcgttccagtagcatttcctggtgcaggatgaactacctgtattgaagaaaacaaatcccattgagcttttacagaacagtcaggtaatagttcaaacatccgcgttatcagtttcaatcgatctgtatcactactagaactaaggaaaggttcaagtacactgacatccagaatggaacaattacgtcaaacttcatctatcaaagttctcttcctgattaacaatgagtatctacacggttaatgaatttgtgctccagaaatggacaaaaaaataactcatccaagagcacataatgtagataccgattatcgaacaagacaccataaaaaagaactaaggtaggtgattccaccgtggtccaatgcttgaatatctccatttacatgctaaaaaagcaaattgatgttccatcaaagatagatgcacaacaagcccaaaacaactactttctccgtttcaatttgtttgttttactttcctttttagtctgtttcaaaaagtgttctttcttttattcaccacctctgtgacaagtcaaaatcaaacaaacaaattaaaacggaggaaagtagattattctagaacttaccatgtgagcaggcttgttaacaacaagaacatgctcatcttcatacactatatccaatggtatatcctctggttcagctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="49420" stop="50724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49720" g_stop="50424" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="705" r_length="705" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U331249" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331249" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49720" e_stop="50424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCATCTTCATACACTATATCCAATGGTATATCCTCTGGTTCAGCTC</genome_strand>
        <mrna_strand>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCATCTTCATACACTATATCCAATGGTATATCCTCTGGTTCAGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331732" ref_strand="+" ref_description="SGN-U331732        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | pseudouridine synthase family protein, contains Pfam profiles: PF00849 RNA pseudouridylate synthase, PF01479: S4 domain | chr1:28545717-28548744 FORWARD | Aliases: None(evalue: 6e-18, score=87) genbank/nr: gi|42572121|ref|NP_974151.1| pseudouridine synthase family protein [Arabidopsis thaliana] (evalue: 4e-16, score=87)">
      <seq>ttaaagaaaaaaaaaaacctctatctaggggacaccgctttgtttcatatcttctttttcacctgttctgagaataacgctaatcctttccatcctcacgggacattggcgatggtagcactcaatactacgtcgttctctttgcttccacaaaacccaaaaccaatttctctttctagggtttcaagcttcatttgcagagcatttaccaaattccccggagactcagattccgacgactcaccggatgaaattcccggccggaggtccaattactccggcgtcaagctcgaagaaacagttgatagcaaaaccggaaagctccgactagattcatgggtcagttcccggatcgacggagttagtaaagctcgtgttcagtctagcatccgctctggtcttgtttccgtcaatggacgcgtcactgataaggtcccactgctttacactcaaaattatatatgtagtaaaaaagaatttgaaataataatccatcttccaataatatttgttttactggttttaagcttgatacggagtttaagaggta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="51527" stop="50378"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51227" g_stop="50681" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="547" r_length="547" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-U331732" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51227" e_stop="50681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGAAAAAAAAAAACCTCTATCTAAACGACACCGCTTTGTTTCATATCTTCTTTTTCACCTGTTCTGAGAATAACGCTAATCCTTTCCATCCTCACGGGACATTGGCGATGGTAGCACTCAATACTACGTCGTTCTCTTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAG</genome_strand>
        <mrna_strand>TTAAAGAAAAAAAAAAACCTCTATCTAGGGGACACCGCTTTGTTTCATATCTTCTTTTTCACCTGTTCTGAGAATAACGCTAATCCTTTCCATCCTCACGGGACATTGGCGATGGTAGCACTCAATACTACGTCGTTCTCTTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAAAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324839" ref_strand="+" ref_description="SGN-U324839        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G76040.2 | Symbol: None | similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:At1g50700.1); similar to calmodulin-domain protein kinase isoform 9 (CPK9) [Arabidopsis thaliana] (TAIR:At3g20410.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:At4g04720.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:At4g21940.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:At1g61950.1); similar to calcium-dependent protein kinase [Oryza sativa (japonica cultivar-group)] (GB:CAA57157.1); similar to Ca2+-dependent protein kinase [Mesembryanthemum crystallinum] (GB:AAD17800.1); similar to calmodulin-like domain protein kinase isoenzyme gamma [Glycine max] (GB:AAB80693.1); similar to calcium-dependent protein kinase [Nicotiana tabacum] (GB:AAC25423.1); similar to PREDICTED P0048D08.105 gene product [Oryza sativa (japonica cultivar-group)] (GB:XP_506365.1); contains InterPro domain Serine/threonine protein kinase, active site (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase (InterPro:IPR001245); contains InterPro domain Calcium-binding EF-hand (InterPro:IPR002048); contains InterPro domain Serine/threonine protein kinase (InterPro:IPR002290); contains InterPro domain Protein kinase (InterPro:IPR000719); contains InterPro domain Proline-rich region (InterPro:IPR000694) | chr1:28542567-28545531 FORWARD | Aliases: None (evalue: 2e-100, score=362) genbank/nr: gi|6721111|gb|AAF26765.1| T4O12.25 [Arabidopsis thaliana](evalue: 1e-98, score=362)">
      <seq>aaaaaaataaaaaaaatctcctttttctcaaaaaaaataaaaataaaaataaaatcatcaatgggtctctgttttactaaagaatgttgttgtccacattatagagatgtaccaatttcatcatcccctgaatataatccaattccagtatcatctcaaaaatatccacaaaattcgataccagaaccaacaccagcaccagcaccagcatcgacttttatgccaaatcaaattggtccaatattaggaaaaccatatgtagacataaaaacactatatgatcttgataaagaattgggaagaggtcaatttgggataacctatctctgtagtgataaatcaagtggattgaaatacgcgtgtaaatcgatttcaaggaggaaattggtaacacaaaaggatattgaagatgttagaagggaagttacaatacttcaatatttaagtggacaaccaaatattgttgaatttaaaggtgcttatgaggataaaaacaatctacatttggttatggagttgtgtagtggtggtgaactttttgataggattacagcaaaagggaattattcagagaaagaagctgcaagaattggaagacaaatagtgaatgtggttcatgtttgtcattttatgggagttatgcatagagatcttaaaccggaaaatttcttgatggttagtaaagatgatgattctccattgaaggctactgattttgggctctctgttttcattgaagaaggaaaaatttacaaggatattgttggaagtgcatattatgttgcccctgaggtgttgaagcgcaagtatgggaaggagatagatgtgtggagtgctggaagtattttgaaatttttatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="56625" stop="53130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56326" g_stop="55585" g_length="742"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="742" r_length="742" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55584" i_stop="53549" i_length="2036">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53548" g_stop="53430" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="861" r_length="119" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-U324839" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324839" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56326" e_stop="55585"/>
          <exon e_start="53548" e_stop="53430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATAAAAAAATCTCCTTTTTCTCAAAAAAAATAAAAATAAAAATAAAATCATCAATGGGTCTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTGATGGTTAGTAAAGATGATGATTCTCCATTGAAGGCTACTGATTTTGGGCTCTCTGTTTTCATTGAAGAAGGTTAGTTTGTTGCAATTTTTTCTATATTAGTCTTTGACGTAACTAGTAAAGTTGTTGTAACGTGATTGACTCAGTGTGTTAGCTGTGAAAATAACTTCCGGTAGAAACATAGGGTAAACCCGCATACAATAGATACTAGTGCTCTAATCCCGTGCATAACAGAAGCTTAGTGCACTAAATTGCTCTTTGCCTTTTTTTATCATCAATATTTTCACTCAAGTTATTTCCTTCTACTTCCTTTTTCATTTTGACCTTGATTTTAAATTAGGTTCATACACATGAGGTAAAATATTTCCTAACAAAGGTGATTAGGTTCGTATCCTTGAGCCTCCTCTATATATCACAATTCTTGTTAGGTTTATGTATTATTTTTAATTCGTTCACTTCCTACTTTAATCATGTGATATTATTTATTTTTGTCGAGCCTGATTCTCTATGACATGGATGTCTTTGATTGGATGTTATGTGATAACTACTTTGAACATTAAGCTTGATTATAAGGCTCGATATGAGGGTTGATTTTTCAGATGATTACTTAACTTAGTTGTTATTATTTTAGAAAGTTATTTTTTTTTATTTCAGCTTTATTTTTTTCCGATAAAATAATGGCTTTCTAAGATAATAAATACTATTAATTAAAAAATCAACTCTTGAATAGTCTTTTAAATTTTCAGAATAATTGATGATAATGTTAATTAGAGCAATAGTGAGTCTAGTGACCATATAAGTTAAGTTTGATTACTTTGTTGAATGAGTCATGATTAGTCACTCAAATTCTTTAATCTTTATTAAATTATTGTCCTCTGGTCTTTTTTTAATTTGTTTTTTAAGGTTTTAGCACAACACACTCATTAAAAAGCCTATTTTAAAACCCTAGGCTTATGACCTATATGCTACTCTAAAGGTTGATTAAGACTTATTAAACATGTTATAAAAAATGTAAAACGAACACATGCCTTTATTTTATTTCATCAAAATAAGTTTATATCAGAAAAGAAGACTTATGACTTACTGCTCATTTACGCGGTTTAAAGTTTTACAAAAATCATGAAACATGAATTGTTGCAATTGAGAAAAATAAAATAAAAGTGTCAATTTGATGGGACAGTGTAATAGACTTTGGTCCTGTGTTTACAAGACTTTATATATGTGGATGGTTGACCTAGTCAATTGAAAGTAACAGGTCAATGCATATTTTCTTCATGTTCCCGTGTAAAAACTGTAAACACAATGAATATAGTCATGATGATTAGAGCACAGTCTGTCGTAGTTTGATTGAACACGAAATTTTTTAAAAATTGATAGTAAAACTTACTTAGTCCTATCATTTTGGTATAATACGTAAATATATGATCTTTTACTTGATTTCAAGCTCCCATCTAACAATTATGACTTTTAATTTTAAATGTGTACAAATAGACACTTAAACGTGTATACACATTTGTCCTACACAATAAATTTGTGTTCTACGTGACCTCCTACATGTTTTATAAGACACGTGTGTTTCTTTGTTCAATTTTATACAAGTTTAAAAATCTATTTGTACAAATCTAAAATTGAAAAACATAGGTATCAACTGAAGTCAAATTAAACAATATATTTTTATGTATTATGATGCTTTTTATTTAGTTTTTCTTGGTTGTAAAAGTAGAACTTTATATCAAGTGGTTTAAAAAAATAATATTGGGTGGGACATAAGTCATAACTTTGGTACGTATTGTTCACAAAGTTGTCATATACACAATTTATGACCGATTTGTTCACTTTTGTACAAAAGGGAATTAACAAAACTTGCTATGTCTTGCTCAATCTTTCATATGCTTTGAGGTTTTGCCGGACTGTAATATTCATTCTACCTATATTGTTAAATTATTTATAAGTTTTATTGAACTGGCAAAATGTAGCAATATATAATGCACATGTTTATTAAGTTGGATCGAATTCAACAGACATATAAAAATGTTAATGATTTTGATTATCTTCGGATATTAAACTTGCAATAAGCATCACATTTTCTCGAATTTATTATTTTGTAGGAAAAATTTACAAGGATATTGTTGGAAGTGCATATTATGTTGCCCCTGAGGTGTTGAAGCGCAAGTATGGGAAGGAGATAGATGTGTGGAGTGCTGGAGTTATTTTGTACATTTTATTA</genome_strand>
        <mrna_strand>AAAAAAATAAAAAAAATCTCCTTTTTCTCAAAAAAAATAAAAATAAAAATAAAATCATCAATGGGTCTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTGATGGTTAGTAAAGATGATGATTCTCCATTGAAGGCTACTGATTTTGGGCTCTCTGTTTTCATTGAAGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAATTTACAAGGATATTGTTGGAAGTGCATATTATGTTGCCCCTGAGGTGTTGAAGCGCAAGTATGGGAAGGAGATAGATGTGTGGAGTGCTGGAAGTATTTTGAAATTTTTATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338087" ref_strand="+" ref_description="SGN-U338087        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>atttttcagagagagtttttcagcagctaaaagagagaaaaaagagagaaattcgcagtcaaaaatccagccataacaaccaacttcaaattgcgattcccgcttcgtttcttgtccgattgagctgatttttggacagcatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggtctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggccaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="+" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="59830" stop="60854"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60130" g_stop="60554" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="+" ref_id="SGN-U338087" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60130" e_stop="60554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTCAGAGAGAGTTTTTCAGCAGCTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGATG</genome_strand>
        <mrna_strand>ATTTTTCAGAGAGAGTTTTTCAGCAGCTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324769" ref_strand="+" ref_description="SGN-U324769        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>tttaatataattttctgaattccctaattagaattttttattgcattcgatctaaggattaagggtgtagtctattaatcaataatatacattatgtattatgattctcaagtgacaaaaaatagttagtaattcttttttatgtgtttaagctttattaaatagagttatctgttacgtatgataataataagtaacaagtatgctataaaattagtcaaaatattgttgggaaagacaagacactaacaaagaatgcctgacaggataacagcggaagaatacccaagtctatactttcccttttcgatttgaaccaagagaaaacaaacaaccacaagcaatatgatagtaaggcagcaagtaattctaccaaacaaatattacaagacaataataaaccaatcacacaagacatcaagatttacgtggaanacccttcgatgtgaagagtagnaaaccacgggaccaaaagctccactataatcaccaagagttacaatattgttctccaaaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="61269" stop="60150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60969" g_stop="60450" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="520" r_length="520" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-U324769" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U324769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60969" e_stop="60450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTAGTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCAATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACAAGCAATATGATAGTAAGGCAGCAAGTAATTCAACCAAACAAATATAACAAGACAATAATAAACCAATCACACAAGACATCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTG</genome_strand>
        <mrna_strand>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTATTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCTATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACAAGCAATATGATAGTAAGGCAGCAAGTAATTCTACCAAACAAATATTACAAGACAATAATAAACCAATCACACAAGACATCAAGATTTACGTGGAANACCCTTCGATGTGAAGAGTAGNAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317778" ref_strand="+" ref_description="SGN-U317778        Tomato 200607 #1 [19 ESTs aligned] arabidopsis/peptide: AT1G60420.1 | Symbol: None | DC1 domain-containing protein, contains Pfam domain PF03107: DC1 domain | chr1:22265573-22268324 FORWARD | Aliases: T13D8.29, T13D8_29 (evalue: 5e-75, score=278) genbank/nr: Protein(evalue: 1e-78, score=297)">
      <seq>gaaactaggcatagctatgtacgtttagggaagagagagaaaaaaaatgaaaaatcagaaatgcgtacaattataaaagcacctaattccaatggtgaaatatcacactaagcttttttgagaaaaaaaaatggaggaattggagaagaagaatattactagtatgaaggaagaagaagcagaagaagaaattgataatagttttgtacctgtttatcactcttttgcttctaaaagttatcattctcaccttgtttctgatgattatttgtcgattttagcatccaaagatggcgaatttctcctttctcccaccggagctcaggtgaaagtttcggaacttgagggcaaagttgttggcctttacttttcagctaactggtattcaccatgtacgaagtttacaaacctgttagtcaatgtgtatcagcagcttaaggaatgcagcaatatcaatctcggtttcgaaatcgtctttgtttcgtctgatgaagacttaaatgccttcaatacttataggtcatcaatgccttggcttgcaattcctttctctgatttggaaacaaggagagcccttacccaaaagtttgatgtcgaaggtatcccttgtttgatagttctactacctaacgatgacaaattagacactgcagttattaaagacggagttgaactcgtgtatcgatatggagtccaagcttttccgtttaccaaagaaaggttggacgagttacgaaagaaggagaaggagaaacgtgacaaccagacattgagcagtttgctaacacacgatgccagagatgttctttcggggcatcctagtcctaaacaagtgtctgttgcttctttaaaggggaaaacagttggactttacttctcagctcaatggtgcaatcctgcgaaaaaatttactccgaggttaatttcagtctacaaaaagattaagcagcagctagagggaaaggatgatgaggatttcgagatagtgttcgtatcaagtgaccataaccaagttgatttcacaacgtattttgagaccatgccctggctagcaatcccatttgatgatccaacaatcaaagctctagctaagtattttgatatccgagggattccgagcctagtgatattgggccctgatggtaaaacagtgaccaaacaaggtaggagcctcatcaacttatacaaagagaacgcttacccattcacaaagactagaatagatatattagagaagcaaatggatgaaatagcaaaaggccttcctaagacagagaaccattcgggccatcgacacgagctcactttagtaccagagggccatgggggtggagcttttatctgttgtgattgtgatgaacagggctatggatgggcttaccaatgccttgagtgtggctatgaggtacatcccaagtgtgtgaagcccgtgcgccacgacccagaaaactaatatattgggctgatcttaggttcttacatgttatatgtagagataaataggtaaaaggataccatgatgtataattgggtataaatcatgtcttaatgacatgttattgtgaatttttaatgggcctttgtttatggaattcacaacttgtagttgttggtttgagaagtcatcagatatgagccttaagaaaatcacaaatgtacataaaaatgtttttataatactccaggacgagtcattatcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0219H08-wHxAi/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0219H08.1" temp_strand="-" temp_description="C04HBa0219H08.1  CU222536.5 htgs_phase:3 submitted_to_sgn_as:C04HBa0219H08 sequenced_by:sanger upload_account_name:uk">
        <position start="64674" stop="61300"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64375" g_stop="64051" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="63176" g_stop="62670" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="832" r_length="507" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62536" g_stop="62206" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="1163" r_length="331" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="62136" g_stop="61601" g_length="536"/>
          <reference_exon_boundary r_type="cDNA" r_start="1164" r_stop="1699" r_length="536" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1700" polyA_stop="1710"/>
      <MATCH_line gen_id="C04HBa0219H08.1" gen_strand="-" ref_id="SGN-U317778" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1699</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0219H08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64375" e_stop="64051"/>
          <exon e_start="63176" e_stop="62670"/>
          <exon e_start="62536" e_stop="62206"/>
          <exon e_start="62136" e_stop="61601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACTAGGCATAGCTATGTACGTTTAGGGAAGAGAGAGAAAAAAAATGAAAAATCAGAAATGCGTACAATTATAAAAGCACCTAATTCCAATGGTGAAATATCACACTAAGCTTTATTGAGAAAAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAGGTATGATTTGCGTTTTCGTTGTTGAAATAAACTATTAACTGAATACAGAGAAAACTGTAGCTTATATCCTATAACAGTAGCATTACGGCGAAAAATTAACTTACAGAGTTTGCGTATAATGTTGTTGTTGGTGATGAGATGTATACGATTCCTTTTCATTAAACTATAAGTCTCGGATTTGAGTTTCGAGTATGAGAAAGAATGTGATAGAGAGTGTTTAACGGGTGCCGATTCAAATTAATGGAGATCTATGGAAACTGAAGGGCTCAGATTCGGCTCTGATCCCTACTAGGAAAATAGAATTAATTATCATTTATCAATGGGAATTCAAGAGTATATGAAATGAAGTTTACATATTTGAAAATTACAAGTAGAAGCCTAATAGATACATTGATTTGAGGAAGTGAATATGTATTCTTTAAGTTATAATCTTTTTGTTCTAAGTAGCACTTGAGAAATCACGAACGTAGATCTCGAATTACGATCTACTTTAGATGATTTGAATAAGGACATGTTGGTATCTCAAAGTAACAATAGTAAATGGACTAATGTAAATTTGATATCTTTGGTATGACCATTATCTAATTGGAGAGTTACAACTCGAAACATTGTGAAGCTGCAATTGGTATAGTTATGGTCCGCGATTTGTTAGTATCTTGAATTTTGCACTATAGGCGTATATGATAGCATCCCCTTTTATGTATTTATCCGTTCTCTATTGATGTAAAAGGTCCATTTCTCTCCGGACATGATAGTCTGCGTGTTTGTGTGTGTGTAATCGTTAAACTCAATGAGATGATCTTATCTTTTGCTCCATTGGAATAATCTTACATGTACTTTAATGATGTAGTGGTTGTGTTGGTGAATGACACAGGTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAAGTGAGTCAGTCTTTCATACATGAATAGATTGTGAAACGTAGTGCCTCTTGATTACAACTTGTTACATGTTAAATGCGTACTCGAGATATTCACCACTTCTATTGTGCATACTTTTATACATTTCACTTTGTAGGTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAGGTATGTAGTATTATCACGTGTTACCATCTCATTTGAAAGCTTTCATTACTTAATGTTATGTCTCGACAGGTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</genome_strand>
        <mrna_strand>GAAACTAGGCATAGCTATGTACGTTTAGGGAAGAGAGAGAAAAAAAATGAAAAATCAGAAATGCGTACAATTATAAAAGCACCTAATTCCAATGGTGAAATATCACACTAAGCTTTTTTGAGAAAAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA.....................................................................................................................................GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAG.....................................................................GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2392" PGL_stop="3248"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2392" e_stop="3248"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="2392" e_stop="3248" e_length="857"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2392" stop="3248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312690" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2481" stop="2783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2553" stop="3169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333839" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACATATTAAAACCCCATCAACTCCTACTCCCCTTTTCTTGATTCCAAATTTTCAATCACAAAAGCAACAACAAGAAGCATATTAATAAACAATGGCCACTGTTACCTCTGCTGCTGTTGCTATTCCATCTTTCACTGGCCTTAAGGCTGGTGCTTCATCATCTTCCAGAGTTAGCACCGGTGCATCCGCTAAGGTGGCAGCTGCCCCAGTTGCCAGATTGACTGTGAAGGCGTCTTTGAAAGATGTCGGTGCTGTGGTTGCTGCCACCGCTGTTAGCGCGATGCTTGCTAGCAATGCCATGGCACTTGAAGTGTTGCTTGGTGGTGATGATGGGAGTCTAGCTTTTATTCCTGGGAACTTCAGCGTTAGTGCTGGTGAGAAAATTACATTCAAGAACAATGCAGGGTTCCCACACAACGTCGTATTTGATGAAGATGAAATCCCAGCTGGTGTGGATGCTAGTAAGATTTCCATGTCTGAAGAGGATCTTCTGAATGCAGCAGGAGAGACATACAGTGTCACTTTGAGTGAGAAAGGAACTTACACTTTCTACTGTGCACCTCACCAGGGAGCTGGAATGGTTGGCAAAGTTACTGTCAACTAATTTTTTTCACACCTCTGTTTTGTAAAAGTTGATTTGAGTTCCCATCAATTTCAACATTTTCCTTTTAGTATTGCCCTTCTCTTTTTGAGGTGTAATGAAAACTCAGGAAATTAAAGTTGCATATGTATCCATGTAATGTCATTTTGTGATTAATACCAGCTTTTTTGGACTGTAATGTTGCTTTTGTAACATCAAAAAGTTCAACCTTCCTCCTGATGGTAAAATAACATACCCGTTTCAGTTGCTTAAA</gDNA_template>
            <first_frame> L  T  Y  *  N  P  I  N  S  Y  S  P  F  L  D  S  K  F  S  I  T  K  A  T  T  R  S  I  L  I  N  N  G  H  C  Y  L  C  C  C  C  Y  S  I  F  H  W  P  *  G  W  C  F  I  I  F  Q  S  *  H  R  C  I  R  *  G  G  S  C  P  S  C  Q  I  D  C  E  G  V  F  E  R  C  R  C  C  G  C  C  H  R  C  *  R  D  A  C  *  Q  C  H  G  T  *  S  V  A  W  W  *  *  W  E  S  S  F  Y  S  W  E  L  Q  R  *  C  W  *  E  N  Y  I  Q  E  Q  C  R  V  P  T  Q  R  R  I  *  *  R  *  N  P  S  W  C  G  C  *  *  D  F  H  V  *  R  G  S  S  E  C  S  R  R  D  I  Q  C  H  F  E  *  E  R  N  L  H  F  L  L  C  T  S  P  G  S  W  N  G  W  Q  S  Y  C  Q  L  I  F  F  T  P  L  F  C  K  S  *  F  E  F  P  S  I  S  T  F  S  F  *  Y  C  P  S  L  F  E  V  *  *  K  L  R  K  L  K  L  H  M  Y  P  C  N  V  I  L  *  L  I  P  A  F  L  D  C  N  V  A  F  V  T  S  K  S  S  T  F  L  L  M  V  K  *  H  T  R  F  S  C  L   </first_frame>
            <second_frame>  S  H  I  K  T  P  S  T  P  T  P  L  F  L  I  P  N  F  Q  S  Q  K  Q  Q  Q  E  A  Y  *  *  T  M  A  T  V  T  S  A  A  V  A  I  P  S  F  T  G  L  K  A  G  A  S  S  S  S  R  V  S  T  G  A  S  A  K  V  A  A  A  P  V  A  R  L  T  V  K  A  S  L  K  D  V  G  A  V  V  A  A  T  A  V  S  A  M  L  A  S  N  A  M  A  L  E  V  L  L  G  G  D  D  G  S  L  A  F  I  P  G  N  F  S  V  S  A  G  E  K  I  T  F  K  N  N  A  G  F  P  H  N  V  V  F  D  E  D  E  I  P  A  G  V  D  A  S  K  I  S  M  S  E  E  D  L  L  N  A  A  G  E  T  Y  S  V  T  L  S  E  K  G  T  Y  T  F  Y  C  A  P  H  Q  G  A  G  M  V  G  K  V  T  V  N  *  F  F  S  H  L  C  F  V  K  V  D  L  S  S  H  Q  F  Q  H  F  P  F  S  I  A  L  L  F  L  R  C  N  E  N  S  G  N  *  S  C  I  C  I  H  V  M  S  F  C  D  *  Y  Q  L  F  W  T  V  M  L  L  L  *  H  Q  K  V  Q  P  S  S  *  W  *  N  N  I  P  V  S  V  A  *  </second_frame>
            <third_frame>   H  I  L  K  P  H  Q  L  L  L  P  F  S  *  F  Q  I  F  N  H  K  S  N  N  K  K  H  I  N  K  Q  W  P  L  L  P  L  L  L  L  L  F  H  L  S  L  A  L  R  L  V  L  H  H  L  P  E  L  A  P  V  H  P  L  R  W  Q  L  P  Q  L  P  D  *  L  *  R  R  L  *  K  M  S  V  L  W  L  L  P  P  L  L  A  R  C  L  L  A  M  P  W  H  L  K  C  C  L  V  V  M  M  G  V  *  L  L  F  L  G  T  S  A  L  V  L  V  R  K  L  H  S  R  T  M  Q  G  S  H  T  T  S  Y  L  M  K  M  K  S  Q  L  V  W  M  L  V  R  F  P  C  L  K  R  I  F  *  M  Q  Q  E  R  H  T  V  S  L  *  V  R  K  E  L  T  L  S  T  V  H  L  T  R  E  L  E  W  L  A  K  L  L  S  T  N  F  F  H  T  S  V  L  *  K  L  I  *  V  P  I  N  F  N  I  F  L  L  V  L  P  F  S  F  *  G  V  M  K  T  Q  E  I  K  V  A  Y  V  S  M  *  C  H  F  V  I  N  T  S  F  F  G  L  *  C  C  F  C  N  I  K  K  F  N  L  P  P  D  G  K  I  T  Y  P  F  Q  L  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2483" stop="2998"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="11156" PGL_stop="10378"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="11156" e_stop="10378"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.946"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="11156" e_stop="10378" e_length="779"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11156" stop="10378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333163" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTTTTTCCACCACCGTTGGCTACGGCGGAGACACCAATTTTTGTTCATTTTCCCCCCTTCCCGTCGGTTAACCACTCCGCCATAGCTGGCGGTTACACGATTCACCTTCAACTTTTTATATATCACATTGCCTCAAGGATCGTTTTTGTTTTGTGTGTGTAAATTTGTGTGTGTGTATATATATATATATATATATATATATATATATATATTATATATCAATGGCGGATGAGAATTGTGAAAATGTGGTATATCTTCATGGAGACTTTGATTTGAAGATTATAGAAGCTCGAAGGTTACCTAACATGGATTTAGTAACCGAACGTCTCAGTCGATGCTTTACAGCTTTAGATATCTGCCGGAAACCGTTTACTCGCCGGAGAAGGAAAGGTCATCGCCGGAAAATCATCACCAGTGATCCGTATGTGACGGTTTGCTTAACCGGCGCTACTGTGGCGCGTACGCGCGTGATATCGAATTGTCAGGATCCTGTTTGGAACGAGCATTTTAAAATCCCGCTTGCTCATCCGGTTTCGGTTGTAGAGTTTCTGGTTAAGGATAATGATGTATTCGGTGCGGATTATATCGGAGTTGCTACCGTGCTGGCTGAGAAGATCAAGTCCGGTGAGCTAATTGATGATTGGTTTCCTATAATTGGACCTTATGGAAAACCTCCAAAGCCTGATTGTGCAATTCGGCTGCAAATGAGATTCATACATTGTGATGGTAATCCGTCTTATAACGGCGGTATATCAGAAGATTTTGGCCTGAAAGCGAG</gDNA_template>
            <first_frame> L  F  S  T  T  V  G  Y  G  G  D  T  N  F  C  S  F  S  P  L  P  V  G  *  P  L  R  H  S  W  R  L  H  D  S  P  S  T  F  Y  I  S  H  C  L  K  D  R  F  C  F  V  C  V  N  L  C  V  C  I  Y  I  Y  I  Y  I  Y  I  Y  I  Y  Y  I  S  M  A  D  E  N  C  E  N  V  V  Y  L  H  G  D  F  D  L  K  I  I  E  A  R  R  L  P  N  M  D  L  V  T  E  R  L  S  R  C  F  T  A  L  D  I  C  R  K  P  F  T  R  R  R  R  K  G  H  R  R  K  I  I  T  S  D  P  Y  V  T  V  C  L  T  G  A  T  V  A  R  T  R  V  I  S  N  C  Q  D  P  V  W  N  E  H  F  K  I  P  L  A  H  P  V  S  V  V  E  F  L  V  K  D  N  D  V  F  G  A  D  Y  I  G  V  A  T  V  L  A  E  K  I  K  S  G  E  L  I  D  D  W  F  P  I  I  G  P  Y  G  K  P  P  K  P  D  C  A  I  R  L  Q  M  R  F  I  H  C  D  G  N  P  S  Y  N  G  G  I  S  E  D  F  G  L  K  A   </first_frame>
            <second_frame>  F  F  P  P  P  L  A  T  A  E  T  P  I  F  V  H  F  P  P  F  P  S  V  N  H  S  A  I  A  G  G  Y  T  I  H  L  Q  L  F  I  Y  H  I  A  S  R  I  V  F  V  L  C  V  *  I  C  V  C  V  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  I  Y  Q  W  R  M  R  I  V  K  M  W  Y  I  F  M  E  T  L  I  *  R  L  *  K  L  E  G  Y  L  T  W  I  *  *  P  N  V  S  V  D  A  L  Q  L  *  I  S  A  G  N  R  L  L  A  G  E  G  K  V  I  A  G  K  S  S  P  V  I  R  M  *  R  F  A  *  P  A  L  L  W  R  V  R  A  *  Y  R  I  V  R  I  L  F  G  T  S  I  L  K  S  R  L  L  I  R  F  R  L  *  S  F  W  L  R  I  M  M  Y  S  V  R  I  I  S  E  L  L  P  C  W  L  R  R  S  S  P  V  S  *  L  M  I  G  F  L  *  L  D  L  M  E  N  L  Q  S  L  I  V  Q  F  G  C  K  *  D  S  Y  I  V  M  V  I  R  L  I  T  A  V  Y  Q  K  I  L  A  *  K  R  </second_frame>
            <third_frame>   F  F  H  H  R  W  L  R  R  R  H  Q  F  L  F  I  F  P  P  S  R  R  L  T  T  P  P  *  L  A  V  T  R  F  T  F  N  F  L  Y  I  T  L  P  Q  G  S  F  L  F  C  V  C  K  F  V  C  V  Y  I  Y  I  Y  I  Y  I  Y  I  Y  I  L  Y  I  N  G  G  *  E  L  *  K  C  G  I  S  S  W  R  L  *  F  E  D  Y  R  S  S  K  V  T  *  H  G  F  S  N  R  T  S  Q  S  M  L  Y  S  F  R  Y  L  P  E  T  V  Y  S  P  E  K  E  R  S  S  P  E  N  H  H  Q  *  S  V  C  D  G  L  L  N  R  R  Y  C  G  A  Y  A  R  D  I  E  L  S  G  S  C  L  E  R  A  F  *  N  P  A  C  S  S  G  F  G  C  R  V  S  G  *  G  *  *  C  I  R  C  G  L  Y  R  S  C  Y  R  A  G  *  E  D  Q  V  R  *  A  N  *  *  L  V  S  Y  N  W  T  L  W  K  T  S  K  A  *  L  C  N  S  A  A  N  E  I  H  T  L  *  W  *  S  V  L  *  R  R  Y  I  R  R  F  W  P  E  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11084" stop="10380"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLRHSWRLHDSPSTFYISHCLKDRFCFVCVNLCVCIYIYIYIYIYIYYISMADENCENVVYLHGDFDLKIIEARRLPNMDLVTERLSRCFTALDICRKPFTRRRRKGHRRKIITSDPYVTVCLTGATVARTRVISNCQDPVWNEHFKIPLAHPVSVVEFLVKDNDVFGADYIGVATVLAEKIKSGELIDDWFPIIGPYGKPPKPDCAIRLQMRFIHCDGNPSYNGGISEDFGLKA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="23934" PGL_stop="24750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23934" e_stop="24750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23934" e_stop="24750" e_length="817"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23934" stop="24750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCTCTGTAATGGAGTCGCCGCCGCCGCCGCCGATGAAAACCACGAAGCGCAGAGCAGCAGCAACAACGTCAATTACTGGATTAACCATTGATAATTCAGTTCTTCCTATAGAATTAATAGTTGAAATACTCATAAGATTGCCTGTAAAAACATTGCTGAAGATGAGATCTGTTTCAAAATCCTGGAGTTCTCTCATCTCAACTCCCGAATTTGTCAAAGCACATGTAAAATTTTCAGCCAATAATCGAGAATTTGCTCACCACAGGCTTCTTAGTATCAGGTCAGGTACTCACACTCACGACGACGGACGTACTAGTAGATGGAAAAATTTCCGCACATATTCTCTTAATGCAATCCTGTATGGAGAATCTCCCTGTTTACCTGTTGAGCTTCATAATTTTGGTATAAGTTATTATGTTTTGTGTTCATGTGATGGATTGTTCGTTATTTCAAAAACCTGGTATAATAATGACATTGAGGATCTGTTTCTATGGAATCCGTCTATTAGAAAGTTGAGTAAACTTCCTTATTCAGGAATTGATGTGTTCAATCGTAGATTTGCTTATGGATTTGGTTATATTGAATCTCAAAATGATTACCATATTGTTGAAATTGTGGCAAGTAAACCTAGTTATCTCATTGCTGATATTAGTGTTTATAGTTTAAGAAATAATTCGTGGAAAACCATTCATGAGTTCCCAAGTATCTCTTTGCCTGAAAATGTTAAATTTATTAAAGGAAAGTTCCATTGGATCACTGGTGGTGGTAGTGGTAGTAACGCGACATGGTTCAACCCCGGAGATGAGGGGTTTG</gDNA_template>
            <first_frame> V  S  S  V  M  E  S  P  P  P  P  P  M  K  T  T  K  R  R  A  A  A  T  T  S  I  T  G  L  T  I  D  N  S  V  L  P  I  E  L  I  V  E  I  L  I  R  L  P  V  K  T  L  L  K  M  R  S  V  S  K  S  W  S  S  L  I  S  T  P  E  F  V  K  A  H  V  K  F  S  A  N  N  R  E  F  A  H  H  R  L  L  S  I  R  S  G  T  H  T  H  D  D  G  R  T  S  R  W  K  N  F  R  T  Y  S  L  N  A  I  L  Y  G  E  S  P  C  L  P  V  E  L  H  N  F  G  I  S  Y  Y  V  L  C  S  C  D  G  L  F  V  I  S  K  T  W  Y  N  N  D  I  E  D  L  F  L  W  N  P  S  I  R  K  L  S  K  L  P  Y  S  G  I  D  V  F  N  R  R  F  A  Y  G  F  G  Y  I  E  S  Q  N  D  Y  H  I  V  E  I  V  A  S  K  P  S  Y  L  I  A  D  I  S  V  Y  S  L  R  N  N  S  W  K  T  I  H  E  F  P  S  I  S  L  P  E  N  V  K  F  I  K  G  K  F  H  W  I  T  G  G  G  S  G  S  N  A  T  W  F  N  P  G  D  E  G  F  </first_frame>
            <second_frame>  F  P  L  *  W  S  R  R  R  R  R  R  *  K  P  R  S  A  E  Q  Q  Q  Q  R  Q  L  L  D  *  P  L  I  I  Q  F  F  L  *  N  *  *  L  K  Y  S  *  D  C  L  *  K  H  C  *  R  *  D  L  F  Q  N  P  G  V  L  S  S  Q  L  P  N  L  S  K  H  M  *  N  F  Q  P  I  I  E  N  L  L  T  T  G  F  L  V  S  G  Q  V  L  T  L  T  T  T  D  V  L  V  D  G  K  I  S  A  H  I  L  L  M  Q  S  C  M  E  N  L  P  V  Y  L  L  S  F  I  I  L  V  *  V  I  M  F  C  V  H  V  M  D  C  S  L  F  Q  K  P  G  I  I  M  T  L  R  I  C  F  Y  G  I  R  L  L  E  S  *  V  N  F  L  I  Q  E  L  M  C  S  I  V  D  L  L  M  D  L  V  I  L  N  L  K  M  I  T  I  L  L  K  L  W  Q  V  N  L  V  I  S  L  L  I  L  V  F  I  V  *  E  I  I  R  G  K  P  F  M  S  S  Q  V  S  L  C  L  K  M  L  N  L  L  K  E  S  S  I  G  S  L  V  V  V  V  V  V  T  R  H  G  S  T  P  E  M  R  G  L </second_frame>
            <third_frame>   F  L  C  N  G  V  A  A  A  A  A  D  E  N  H  E  A  Q  S  S  S  N  N  V  N  Y  W  I  N  H  *  *  F  S  S  S  Y  R  I  N  S  *  N  T  H  K  I  A  C  K  N  I  A  E  D  E  I  C  F  K  I  L  E  F  S  H  L  N  S  R  I  C  Q  S  T  C  K  I  F  S  Q  *  S  R  I  C  S  P  Q  A  S  *  Y  Q  V  R  Y  S  H  S  R  R  R  T  Y  *  *  M  E  K  F  P  H  I  F  S  *  C  N  P  V  W  R  I  S  L  F  T  C  *  A  S  *  F  W  Y  K  L  L  C  F  V  F  M  *  W  I  V  R  Y  F  K  N  L  V  *  *  *  H  *  G  S  V  S  M  E  S  V  Y  *  K  V  E  *  T  S  L  F  R  N  *  C  V  Q  S  *  I  C  L  W  I  W  L  Y  *  I  S  K  *  L  P  Y  C  *  N  C  G  K  *  T  *  L  S  H  C  *  Y  *  C  L  *  F  K  K  *  F  V  E  N  H  S  *  V  P  K  Y  L  F  A  *  K  C  *  I  Y  *  R  K  V  P  L  D  H  W  W  W  *  W  *  *  R  D  M  V  Q  P  R  R  *  G  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23934" stop="24749"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>816</number_coding_nucleotides>
                  <number_encoded_amino_acids>272</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VSSVMESPPPPPMKTTKRRAAATTSITGLTIDNSVLPIELIVEILIRLPVKTLLKMRSVSKSWSSLISTPEFVKAHVKFSANNREFAHHRLLSIRSGTHTHDDGRTSRWKNFRTYSLNAILYGESPCLPVELHNFGISYYVLCSCDGLFVISKTWYNNDIEDLFLWNPSIRKLSKLPYSGIDVFNRRFAYGFGYIESQNDYHIVEIVASKPSYLIADISVYSLRNNSWKTIHEFPSISLPENVKFIKGKFHWITGGGSGSNATWFNPGDEGF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27481" PGL_stop="29537"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27481" e_stop="28025"/>
            <exon e_start="28868" e_stop="29537"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.989" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27481" e_stop="28025" e_length="545"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.989">
            <gDNA_intron_boundary i_start="28026" i_stop="28867" i_length="842"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28868" e_stop="29537" e_length="670"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27481" stop="28025"/>
              <exon start="28868" stop="29537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315576" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAATCCAATAGTGTCACAACCTCATATCAAACTACATTTCCATTTCTCCCTTTCTTCTAAACTTGACATCCCTCTTCCTTTTGTGGCTATTCTTGAAAAAAAAAATCTTTAATCTATGGCTACTCTCACAAATTTTTTGCTCAAACCCTCTCCAAATCTAGCTTCAATTACAAAAATTAGCCCTTCACTTTACTCCAATTTCCCTTTTGAGAAATCCAAACAATCAATTTTCAAGAACCTCAAAACAAACAAGCCCTTATTGATTACAAAGGCAACAGCAGCACCTGATGTTGAGAAAAAAGTGGCTAAAAGTGAAAGAGTACAAAAGGTTAATAGTATGGAGGAATTGGATGAAGCATTAAAAAATGCGAAAAATCGACTAGTTGTGGTTGAATTTGCAGGCAAAGATAGTGAACGTTCGAAAAATATTTATCCTTTTATGGTGAATTTAAGTAAGACATGTAACGATGTCGATTTCTTGTTGGTGATCGGAGATGAAACGGAGAAGACTAAGGCACTCTGCCGGAGAGAAAAGATTGACAAG : GTACCACATTTCAACTTCTACAAAAGCATGGAGAAGATCCACGAGGAAGAAGGCATTGGCCCGGACCAACTTGCCGGTGATGTACTCTACTACGGTGACAGCCACTCCGAAGTAGTGCAGCTCCACAGCAGAGAAGACGTTGAAAAGGTAATCCAAGACCACAAAATCGATAAAAAATTAATAGTCCTCGACGTTGGATTGAAGCATTGTGGACCATGTGTGAAAGTTTATCCAACAGTGATTAAGCTATCGAAACAGATGGCTGATACAGTCGTGTTCGCGAGAATGAATGGTGATGAGAATGATAGTTGTATGCAGTTTTTGAAAGACATGGATGTTATTGAAGTGCCTACGTTTTTGTTTATAAGAGATGGTGAAATTTGTGGAAGGTATGTTGGTTCTGGGAAAGGTGAACTTATTGGAGAAATTCTTAGATATCAAGGAGTTAGGGTTACTTATTAATATTGTTGAAGTCATATTATATACTTAATTGGGACATTTGATTTTGTGTTAAATGATTATGGACTAGTTAAGTGGGGAAAAAACCAAGTTGACTTGGTTGAGATTTAAGTTTTGGTATGTTTAGTTTGTAAAACTATGTTGTAAGTGATCAAAGATTGTCATGATAATTGATTTTGAATGAGAATGTTATTAGCCTTGATTTAGTTGA</gDNA_template>
            <first_frame> S  I  Q  *  C  H  N  L  I  S  N  Y  I  S  I  S  P  F  L  L  N  L  T  S  L  F  L  L  W  L  F  L  K  K  K  I  F  N  L  W  L  L  S  Q  I  F  C  S  N  P  L  Q  I  *  L  Q  L  Q  K  L  A  L  H  F  T  P  I  S  L  L  R  N  P  N  N  Q  F  S  R  T  S  K  Q  T  S  P  Y  *  L  Q  R  Q  Q  Q  H  L  M  L  R  K  K  W  L  K  V  K  E  Y  K  R  L  I  V  W  R  N  W  M  K  H  *  K  M  R  K  I  D  *  L  W  L  N  L  Q  A  K  I  V  N  V  R  K  I  F  I  L  L  W  *  I  *  V  R  H  V  T  M  S  I  S  C  W  *  S  E  M  K  R  R  R  L  R  H  S  A  G  E  K  R  L  T  R :   Y  H  I  S  T  S  T  K  A  W  R  R  S  T  R  K  K  A  L  A  R  T  N  L  P  V  M  Y  S  T  T  V  T  A  T  P  K  *  C  S  S  T  A  E  K  T  L  K  R  *  S  K  T  T  K  S  I  K  N  *  *  S  S  T  L  D  *  S  I  V  D  H  V  *  K  F  I  Q  Q  *  L  S  Y  R  N  R  W  L  I  Q  S  C  S  R  E  *  M  V  M  R  M  I  V  V  C  S  F  *  K  T  W  M  L  L  K  C  L  R  F  C  L  *  E  M  V  K  F  V  E  G  M  L  V  L  G  K  V  N  L  L  E  K  F  L  D  I  K  E  L  G  L  L  I  N  I  V  E  V  I  L  Y  T  *  L  G  H  L  I  L  C  *  M  I  M  D  *  L  S  G  E  K  T  K  L  T  W  L  R  F  K  F  W  Y  V  *  F  V  K  L  C  C  K  *  S  K  I  V  M  I  I  D  F  E  *  E  C  Y  *  P  *  F  S  * </first_frame>
            <second_frame>  Q  S  N  S  V  T  T  S  Y  Q  T  T  F  P  F  L  P  F  F  *  T  *  H  P  S  S  F  C  G  Y  S  *  K  K  K  S  L  I  Y  G  Y  S  H  K  F  F  A  Q  T  L  S  K  S  S  F  N  Y  K  N  *  P  F  T  L  L  Q  F  P  F  *  E  I  Q  T  I  N  F  Q  E  P  Q  N  K  Q  A  L  I  D  Y  K  G  N  S  S  T  *  C  *  E  K  S  G  *  K  *  K  S  T  K  G  *  *  Y  G  G  I  G  *  S  I  K  K  C  E  K  S  T  S  C  G  *  I  C  R  Q  R  *  *  T  F  E  K  Y  L  S  F  Y  G  E  F  K  *  D  M  *  R  C  R  F  L  V  G  D  R  R  *  N  G  E  D  *  G  T  L  P  E  R  K  D  *  Q   : G  T  T  F  Q  L  L  Q  K  H  G  E  D  P  R  G  R  R  H  W  P  G  P  T  C  R  *  C  T  L  L  R  *  Q  P  L  R  S  S  A  A  P  Q  Q  R  R  R  *  K  G  N  P  R  P  Q  N  R  *  K  I  N  S  P  R  R  W  I  E  A  L  W  T  M  C  E  S  L  S  N  S  D  *  A  I  E  T  D  G  *  Y  S  R  V  R  E  N  E  W  *  *  E  *  *  L  Y  A  V  F  E  R  H  G  C  Y  *  S  A  Y  V  F  V  Y  K  R  W  *  N  L  W  K  V  C  W  F  W  E  R  *  T  Y  W  R  N  S  *  I  S  R  S  *  G  Y  L  L  I  L  L  K  S  Y  Y  I  L  N  W  D  I  *  F  C  V  K  *  L  W  T  S  *  V  G  K  K  P  S  *  L  G  *  D  L  S  F  G  M  F  S  L  *  N  Y  V  V  S  D  Q  R  L  S  *  *  L  I  L  N  E  N  V  I  S  L  D  L  V   </second_frame>
            <third_frame>   N  P  I  V  S  Q  P  H  I  K  L  H  F  H  F  S  L  S  S  K  L  D  I  P  L  P  F  V  A  I  L  E  K  K  N  L  *  S  M  A  T  L  T  N  F  L  L  K  P  S  P  N  L  A  S  I  T  K  I  S  P  S  L  Y  S  N  F  P  F  E  K  S  K  Q  S  I  F  K  N  L  K  T  N  K  P  L  L  I  T  K  A  T  A  A  P  D  V  E  K  K  V  A  K  S  E  R  V  Q  K  V  N  S  M  E  E  L  D  E  A  L  K  N  A  K  N  R  L  V  V  V  E  F  A  G  K  D  S  E  R  S  K  N  I  Y  P  F  M  V  N  L  S  K  T  C  N  D  V  D  F  L  L  V  I  G  D  E  T  E  K  T  K  A  L  C  R  R  E  K  I  D  K  :  V  P  H  F  N  F  Y  K  S  M  E  K  I  H  E  E  E  G  I  G  P  D  Q  L  A  G  D  V  L  Y  Y  G  D  S  H  S  E  V  V  Q  L  H  S  R  E  D  V  E  K  V  I  Q  D  H  K  I  D  K  K  L  I  V  L  D  V  G  L  K  H  C  G  P  C  V  K  V  Y  P  T  V  I  K  L  S  K  Q  M  A  D  T  V  V  F  A  R  M  N  G  D  E  N  D  S  C  M  Q  F  L  K  D  M  D  V  I  E  V  P  T  F  L  F  I  R  D  G  E  I  C  G  R  Y  V  G  S  G  K  G  E  L  I  G  E  I  L  R  Y  Q  G  V  R  V  T  Y  *  Y  C  *  S  H  I  I  Y  L  I  G  T  F  D  F  V  L  N  D  Y  G  L  V  K  W  G  K  N  Q  V  D  L  V  E  I  *  V  L  V  C  L  V  C  K  T  M  L  *  V  I  K  D  C  H  D  N  *  F  *  M  R  M  L  L  A  L  I  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27594" stop="28025"/>
                    <exon start="28868" stop="29329"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>891</number_coding_nucleotides>
                  <number_encoded_amino_acids>297</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SMATLTNFLLKPSPNLASITKISPSLYSNFPFEKSKQSIFKNLKTNKPLLITKATAAPDVEKKVAKSERVQKVNSMEELDEALKNAKNRLVVVEFAGKDSERSKNIYPFMVNLSKTCNDVDFLLVIGDETEKTKALCRREKIDKVPHFNFYKSMEKIHEEEGIGPDQLAGDVLYYGDSHSEVVQLHSREDVEKVIQDHKIDKKLIVLDVGLKHCGPCVKVYPTVIKLSKQMADTVVFARMNGDENDSCMQFLKDMDVIEVPTFLFIRDGEICGRYVGSGKGELIGEILRYQGVRVTY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="31062" PGL_stop="31963"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31062" e_stop="31963"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="31062" e_stop="31963" e_length="902"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31062" stop="31963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320083" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATCATTTCAACACCAAAAAAGCTAAGATATATTTTTGTTCTTCATATCAACACCAACAAAAAAGTACAAAAATGGAGAAGGAAAAACCAAGCAAGCCAAAGAAAAACATGATTTTGAAATTTTTACCAAAAGCAGCAGCAGCAACCGTTATATTCCAAAACCACCCTTTTAGTCCAGGTAGAGATAAAAGATTACATCATAATCACAAAGGATTTTCTGGTCCAATTATATCTATAATTCCAGCTGAAGCGAGAATTAGAAAATCGAATAGCGAAACAAAGGAAGAAGAACCAACATCACCAAAAGTTTCGTGCATTGGTCAGATCAAACAGAGGAAGAAACTCAATAAACCCAGGAAAACGGAACGCCCAAAATCACTCGAAAAAAAATCATCCAATTTTAAAAATATCTTTCAAAGACGGAGAAAAACCGATGTTGATAAAAATGAAACAAATATGAGATGCGAGGTACAAAACAGAGCACCACCCTGTTTGAGTCAAATGAGGAAATATGCTAGTGGTCGTGAAGGTAATTTATCGAATTTCGATTGGAAAAACGTGCAGATTACACCTGATGATCATCGGAAATATTACTCCGATGATGATAGAGATGATTATCATGAAGCTGAAGATGAAGATGAGGTAATAATTCCATTTTCAGCTCCAATTTTAATAGGAAGAGATAATAGACCAAATTTTACTTTGGAGCCAAAAAAGGAAATTAATTTATGGAAAAGAAGAACTATGACTAAACCAAATCCTCTTCAATTGAAGAAATAAGTTTTGTTTAGTTGATTTAAGCTTAGAATTAGTTTACAAATCATCATGTTGTAAACTATGATGCAAGTGTAACAATATTTTCAAAGAATTCAACTATTCAAGTAATATAGTTTAGTTTAAC</gDNA_template>
            <first_frame> *  S  F  Q  H  Q  K  S  *  D  I  F  L  F  F  I  S  T  P  T  K  K  Y  K  N  G  E  G  K  T  K  Q  A  K  E  K  H  D  F  E  I  F  T  K  S  S  S  S  N  R  Y  I  P  K  P  P  F  *  S  R  *  R  *  K  I  T  S  *  S  Q  R  I  F  W  S  N  Y  I  Y  N  S  S  *  S  E  N  *  K  I  E  *  R  N  K  G  R  R  T  N  I  T  K  S  F  V  H  W  S  D  Q  T  E  E  E  T  Q  *  T  Q  E  N  G  T  P  K  I  T  R  K  K  I  I  Q  F  *  K  Y  L  S  K  T  E  K  N  R  C  *  *  K  *  N  K  Y  E  M  R  G  T  K  Q  S  T  T  L  F  E  S  N  E  E  I  C  *  W  S  *  R  *  F  I  E  F  R  L  E  K  R  A  D  Y  T  *  *  S  S  E  I  L  L  R  *  *  *  R  *  L  S  *  S  *  R  *  R  *  G  N  N  S  I  F  S  S  N  F  N  R  K  R  *  *  T  K  F  Y  F  G  A  K  K  G  N  *  F  M  E  K  K  N  Y  D  *  T  K  S  S  S  I  E  E  I  S  F  V  *  L  I  *  A  *  N  *  F  T  N  H  H  V  V  N  Y  D  A  S  V  T  I  F  S  K  N  S  T  I  Q  V  I  *  F  S  L   </first_frame>
            <second_frame>  N  H  F  N  T  K  K  A  K  I  Y  F  C  S  S  Y  Q  H  Q  Q  K  S  T  K  M  E  K  E  K  P  S  K  P  K  K  N  M  I  L  K  F  L  P  K  A  A  A  A  T  V  I  F  Q  N  H  P  F  S  P  G  R  D  K  R  L  H  H  N  H  K  G  F  S  G  P  I  I  S  I  I  P  A  E  A  R  I  R  K  S  N  S  E  T  K  E  E  E  P  T  S  P  K  V  S  C  I  G  Q  I  K  Q  R  K  K  L  N  K  P  R  K  T  E  R  P  K  S  L  E  K  K  S  S  N  F  K  N  I  F  Q  R  R  R  K  T  D  V  D  K  N  E  T  N  M  R  C  E  V  Q  N  R  A  P  P  C  L  S  Q  M  R  K  Y  A  S  G  R  E  G  N  L  S  N  F  D  W  K  N  V  Q  I  T  P  D  D  H  R  K  Y  Y  S  D  D  D  R  D  D  Y  H  E  A  E  D  E  D  E  V  I  I  P  F  S  A  P  I  L  I  G  R  D  N  R  P  N  F  T  L  E  P  K  K  E  I  N  L  W  K  R  R  T  M  T  K  P  N  P  L  Q  L  K  K  *  V  L  F  S  *  F  K  L  R  I  S  L  Q  I  I  M  L  *  T  M  M  Q  V  *  Q  Y  F  Q  R  I  Q  L  F  K  *  Y  S  L  V  *  </second_frame>
            <third_frame>   I  I  S  T  P  K  K  L  R  Y  I  F  V  L  H  I  N  T  N  K  K  V  Q  K  W  R  R  K  N  Q  A  S  Q  R  K  T  *  F  *  N  F  Y  Q  K  Q  Q  Q  Q  P  L  Y  S  K  T  T  L  L  V  Q  V  E  I  K  D  Y  I  I  I  T  K  D  F  L  V  Q  L  Y  L  *  F  Q  L  K  R  E  L  E  N  R  I  A  K  Q  R  K  K  N  Q  H  H  Q  K  F  R  A  L  V  R  S  N  R  G  R  N  S  I  N  P  G  K  R  N  A  Q  N  H  S  K  K  N  H  P  I  L  K  I  S  F  K  D  G  E  K  P  M  L  I  K  M  K  Q  I  *  D  A  R  Y  K  T  E  H  H  P  V  *  V  K  *  G  N  M  L  V  V  V  K  V  I  Y  R  I  S  I  G  K  T  C  R  L  H  L  M  I  I  G  N  I  T  P  M  M  I  E  M  I  I  M  K  L  K  M  K  M  R  *  *  F  H  F  Q  L  Q  F  *  *  E  E  I  I  D  Q  I  L  L  W  S  Q  K  R  K  L  I  Y  G  K  E  E  L  *  L  N  Q  I  L  F  N  *  R  N  K  F  C  L  V  D  L  S  L  E  L  V  Y  K  S  S  C  C  K  L  *  C  K  C  N  N  I  F  K  E  F  N  Y  S  S  N  I  V  *  F  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31063" stop="31842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>777</number_coding_nucleotides>
                  <number_encoded_amino_acids>259</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NHFNTKKAKIYFCSSYQHQQKSTKMEKEKPSKPKKNMILKFLPKAAAATVIFQNHPFSPGRDKRLHHNHKGFSGPIISIIPAEARIRKSNSETKEEEPTSPKVSCIGQIKQRKKLNKPRKTERPKSLEKKSSNFKNIFQRRRKTDVDKNETNMRCEVQNRAPPCLSQMRKYASGREGNLSNFDWKNVQITPDDHRKYYSDDDRDDYHEAEDEDEVIIPFSAPILIGRDNRPNFTLEPKKEINLWKRRTMTKPNPLQLKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="39566" PGL_stop="38783"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39566" e_stop="38783"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="39566" e_stop="38783" e_length="784"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39566" stop="38783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344566" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTTTTCTTTAATGATTTTAATTAAATAAAATAAATTATTATAGGGTTTAAAAGAAGTGTTGGGTGGGGTTTGGGGGATGGTAGATAGGTCAGTACTTAGTAATTAGCAGCAAATTACTGAACACAGCTGAATCCATGGCCGTCACGAAATCTATGGTACGCTTGAATTTCTGCCGCTATTTCCTCAGTTCATTCTCTTCTCAGAGCAAATTTAGATTCTTCAGCTCTGTTTCAACCTCAGAAATCGCCCTCTGCGGCGACGTCGGCGACGGTAAAGATGAAAATGGGGGACCCATATGCCGAACTGAGGTTTTATCTAAAGAAGAAGCTCAAATAGCTGAAAAGTTTCATTCTTTAATCAAAGACCATCATCGGAAAAACCCTACAGCTACTCCTACTTCAATTCCCTTAAACCCTAACATCACTTTCCCAACTCTCTCCTTCGATTTTTCTAGTATCTCCGATAACCGGTCCATTTCCCCGCCGGTCGTCAGCCGGGTTATCGAGAAATGCGGGTCGGTTCGGCATGGTATCCCATTTTCACAGGCTCTAGCTTTCTTCAATTGGGCTGCAGCTCGTGATTCGTGTGGATCTTTCTTAAACCCCGAGCCTTACAATGAAATGATTGATCTTGCTGGAAAGGTACGTCAATTTGATGTTGCTTGGCATTTGATTGATTCAATGAAACTGAAAAATATCAAAATCCCAATTGAAACTTTTTCGATTTTGATTCGTCGTTATGTTCGTGCTGGTCTTGCTTCCGAAGCTGTTCATACGTTTA</gDNA_template>
            <first_frame> F  F  F  L  *  *  F  *  L  N  K  I  N  Y  Y  R  V  *  K  K  C  W  V  G  F  G  G  W  *  I  G  Q  Y  L  V  I  S  S  K  L  L  N  T  A  E  S  M  A  V  T  K  S  M  V  R  L  N  F  C  R  Y  F  L  S  S  F  S  S  Q  S  K  F  R  F  F  S  S  V  S  T  S  E  I  A  L  C  G  D  V  G  D  G  K  D  E  N  G  G  P  I  C  R  T  E  V  L  S  K  E  E  A  Q  I  A  E  K  F  H  S  L  I  K  D  H  H  R  K  N  P  T  A  T  P  T  S  I  P  L  N  P  N  I  T  F  P  T  L  S  F  D  F  S  S  I  S  D  N  R  S  I  S  P  P  V  V  S  R  V  I  E  K  C  G  S  V  R  H  G  I  P  F  S  Q  A  L  A  F  F  N  W  A  A  A  R  D  S  C  G  S  F  L  N  P  E  P  Y  N  E  M  I  D  L  A  G  K  V  R  Q  F  D  V  A  W  H  L  I  D  S  M  K  L  K  N  I  K  I  P  I  E  T  F  S  I  L  I  R  R  Y  V  R  A  G  L  A  S  E  A  V  H  T  F  </first_frame>
            <second_frame>  F  F  F  F  N  D  F  N  *  I  K  *  I  I  I  G  F  K  R  S  V  G  W  G  L  G  D  G  R  *  V  S  T  *  *  L  A  A  N  Y  *  T  Q  L  N  P  W  P  S  R  N  L  W  Y  A  *  I  S  A  A  I  S  S  V  H  S  L  L  R  A  N  L  D  S  S  A  L  F  Q  P  Q  K  S  P  S  A  A  T  S  A  T  V  K  M  K  M  G  D  P  Y  A  E  L  R  F  Y  L  K  K  K  L  K  *  L  K  S  F  I  L  *  S  K  T  I  I  G  K  T  L  Q  L  L  L  L  Q  F  P  *  T  L  T  S  L  S  Q  L  S  P  S  I  F  L  V  S  P  I  T  G  P  F  P  R  R  S  S  A  G  L  S  R  N  A  G  R  F  G  M  V  S  H  F  H  R  L  *  L  S  S  I  G  L  Q  L  V  I  R  V  D  L  S  *  T  P  S  L  T  M  K  *  L  I  L  L  E  R  Y  V  N  L  M  L  L  G  I  *  L  I  Q  *  N  *  K  I  S  K  S  Q  L  K  L  F  R  F  *  F  V  V  M  F  V  L  V  L  L  P  K  L  F  I  R  L </second_frame>
            <third_frame>   F  F  S  L  M  I  L  I  K  *  N  K  L  L  *  G  L  K  E  V  L  G  G  V  W  G  M  V  D  R  S  V  L  S  N  *  Q  Q  I  T  E  H  S  *  I  H  G  R  H  E  I  Y  G  T  L  E  F  L  P  L  F  P  Q  F  I  L  F  S  E  Q  I  *  I  L  Q  L  C  F  N  L  R  N  R  P  L  R  R  R  R  R  R  *  R  *  K  W  G  T  H  M  P  N  *  G  F  I  *  R  R  S  S  N  S  *  K  V  S  F  F  N  Q  R  P  S  S  E  K  P  Y  S  Y  S  Y  F  N  S  L  K  P  *  H  H  F  P  N  S  L  L  R  F  F  *  Y  L  R  *  P  V  H  F  P  A  G  R  Q  P  G  Y  R  E  M  R  V  G  S  A  W  Y  P  I  F  T  G  S  S  F  L  Q  L  G  C  S  S  *  F  V  W  I  F  L  K  P  R  A  L  Q  *  N  D  *  S  C  W  K  G  T  S  I  *  C  C  L  A  F  D  *  F  N  E  T  E  K  Y  Q  N  P  N  *  N  F  F  D  F  D  S  S  L  C  S  C  W  S  C  F  R  S  C  S  Y  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39479" stop="38784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>696</number_coding_nucleotides>
                  <number_encoded_amino_acids>232</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGQYLVISSKLLNTAESMAVTKSMVRLNFCRYFLSSFSSQSKFRFFSSVSTSEIALCGDVGDGKDENGGPICRTEVLSKEEAQIAEKFHSLIKDHHRKNPTATPTSIPLNPNITFPTLSFDFSSISDNRSISPPVVSRVIEKCGSVRHGIPFSQALAFFNWAAARDSCGSFLNPEPYNEMIDLAGKVRQFDVAWHLIDSMKLKNIKIPIETFSILIRRYVRAGLASEAVHTF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="43511" PGL_stop="46499"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43511" e_stop="43867"/>
            <exon e_start="44004" e_stop="44094"/>
            <exon e_start="44848" e_stop="44945"/>
            <exon e_start="45505" e_stop="45602"/>
            <exon e_start="46137" e_stop="46266"/>
            <exon e_start="46396" e_stop="46499"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.905" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.966" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.505" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.525" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="43511" e_stop="43867" e_length="357"/>
          </exon>
          <intron i_serial="1" don_prob="0.905" acc_prob="0.997">
            <gDNA_intron_boundary i_start="43868" i_stop="44003" i_length="136"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="44004" e_stop="44094" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.971">
            <gDNA_intron_boundary i_start="44095" i_stop="44847" i_length="753"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="44848" e_stop="44945" e_length="98"/>
          </exon>
          <intron i_serial="3" don_prob="0.505" acc_prob="0.982">
            <gDNA_intron_boundary i_start="44946" i_stop="45504" i_length="559"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="45505" e_stop="45602" e_length="98"/>
          </exon>
          <intron i_serial="4" don_prob="0.933" acc_prob="0.525">
            <gDNA_intron_boundary i_start="45603" i_stop="46136" i_length="534"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46137" e_stop="46266" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.955" acc_prob="0.998">
            <gDNA_intron_boundary i_start="46267" i_stop="46395" i_length="129"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="46396" e_stop="46499" e_length="104"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43511" stop="43867"/>
              <exon start="44004" stop="44094"/>
              <exon start="44848" stop="44945"/>
              <exon start="45505" stop="45602"/>
              <exon start="46137" stop="46266"/>
              <exon start="46396" stop="46499"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U316771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTATACGATTTTCTCAATTTCTCCGATTCATTTTTTCCGTTCGACGAACTCTCACCGGGAAAAGCAACTCCATTGCCGGGAAATACTCTTATTTGATAAACGAATGCTGCATTAAATTTGATCAATCTAGGGTTTCGGTGAAGATTGTAGTGAAGCAATGGCGAAGGGGAGGTTGAATCGGCATCAAGGGAAGAGATCATCGACAGTGGTTTTAGTGCTTTCGATGCTTCTGATGCTAACAGTTGTGCTTCTAATGCTTCTCGCTCTTGGCATTTTTAATCTTCCTGTTGGTTCTGATGATGAGTCGTCTTCGACTGTTCAGGATCACATCAAGTTCAAGCGGTTCAACTTAGATAT : AGGGGAAGGTGACGGACTGGGGAAAAGAGGGGAACAATGGACAGAGATCTTATCGTGGGAGCCTCGTGCATTTGTTTACCACAATTTCTTG : TCCAAGGAAGAATGTGAATACTTGATAAATCAAGCTAAGCCTCACATGGTGAAGTCATCAGTTGTTGATAGCAAGACCGGTCAGAGTAAAGATAGCAG : GGTTCGTACAAGTTCGGGAATGTTTTTGAGGAGGGGGCGAGATAAAATTATCAGAAATATTGAGAAGAGAATAGCAGATTATACATTCATTCCTGCAG : AACATGGAGAAGGTCTACAAGTCTTACATTATGAAGTTGGACAGAAGTATGAGCCTCATTATGACTACTTCCTTGATGACTTCAACACCAAAAATGGGGGCCAACGTATAGCTACTCTTCTCATGTATCT : ATCAGATGTTGAAGAAGGAGGTGAGACTGTTTTTCCAGCAGCAAAGGGAAACTTCAGTTCTAGTCCTGGGTGGAATGAGTTGTCAGAATGTGCCAAAGGGGGCC</gDNA_template>
            <first_frame> L  Y  D  F  L  N  F  S  D  S  F  F  P  F  D  E  L  S  P  G  K  A  T  P  L  P  G  N  T  L  I  *  *  T  N  A  A  L  N  L  I  N  L  G  F  R  *  R  L  *  *  S  N  G  E  G  E  V  E  S  A  S  R  E  E  I  I  D  S  G  F  S  A  F  D  A  S  D  A  N  S  C  A  S  N  A  S  R  S  W  H  F  *  S  S  C  W  F  *  *  *  V  V  F  D  C  S  G  S  H  Q  V  Q  A  V  Q  L  R  Y  :  R  G  R  *  R  T  G  E  K  R  G  T  M  D  R  D  L  I  V  G  A  S  C  I  C  L  P  Q  F  L   : V  Q  G  R  M  *  I  L  D  K  S  S  *  A  S  H  G  E  V  I  S  C  *  *  Q  D  R  S  E  *  R  *  Q  :  G  S  Y  K  F  G  N  V  F  E  E  G  A  R  *  N  Y  Q  K  Y  *  E  E  N  S  R  L  Y  I  H  S  C  R :   T  W  R  R  S  T  S  L  T  L  *  S  W  T  E  V  *  A  S  L  *  L  L  P  *  *  L  Q  H  Q  K  W  G  P  T  Y  S  Y  S  S  H  V  S  :  I  R  C  *  R  R  R  *  D  C  F  S  S  S  K  G  K  L  Q  F  *  S  W  V  E  *  V  V  R  M  C  Q  R  G   </first_frame>
            <second_frame>  Y  T  I  F  S  I  S  P  I  H  F  F  R  S  T  N  S  H  R  E  K  Q  L  H  C  R  E  I  L  L  F  D  K  R  M  L  H  *  I  *  S  I  *  G  F  G  E  D  C  S  E  A  M  A  K  G  R  L  N  R  H  Q  G  K  R  S  S  T  V  V  L  V  L  S  M  L  L  M  L  T  V  V  L  L  M  L  L  A  L  G  I  F  N  L  P  V  G  S  D  D  E  S  S  S  T  V  Q  D  H  I  K  F  K  R  F  N  L  D  I :   G  E  G  D  G  L  G  K  R  G  E  Q  W  T  E  I  L  S  W  E  P  R  A  F  V  Y  H  N  F  L  :  S  K  E  E  C  E  Y  L  I  N  Q  A  K  P  H  M  V  K  S  S  V  V  D  S  K  T  G  Q  S  K  D  S  R :   V  R  T  S  S  G  M  F  L  R  R  G  R  D  K  I  I  R  N  I  E  K  R  I  A  D  Y  T  F  I  P  A   : E  H  G  E  G  L  Q  V  L  H  Y  E  V  G  Q  K  Y  E  P  H  Y  D  Y  F  L  D  D  F  N  T  K  N  G  G  Q  R  I  A  T  L  L  M  Y  L :   S  D  V  E  E  G  G  E  T  V  F  P  A  A  K  G  N  F  S  S  S  P  G  W  N  E  L  S  E  C  A  K  G  G  </second_frame>
            <third_frame>   I  R  F  S  Q  F  L  R  F  I  F  S  V  R  R  T  L  T  G  K  S  N  S  I  A  G  K  Y  S  Y  L  I  N  E  C  C  I  K  F  D  Q  S  R  V  S  V  K  I  V  V  K  Q  W  R  R  G  G  *  I  G  I  K  G  R  D  H  R  Q  W  F  *  C  F  R  C  F  *  C  *  Q  L  C  F  *  C  F  S  L  L  A  F  L  I  F  L  L  V  L  M  M  S  R  L  R  L  F  R  I  T  S  S  S  S  G  S  T  *  I   : *  G  K  V  T  D  W  G  K  E  G  N  N  G  Q  R  S  Y  R  G  S  L  V  H  L  F  T  T  I  S  C :   P  R  K  N  V  N  T  *  *  I  K  L  S  L  T  W  *  S  H  Q  L  L  I  A  R  P  V  R  V  K  I  A   : G  F  V  Q  V  R  E  C  F  *  G  G  G  E  I  K  L  S  E  I  L  R  R  E  *  Q  I  I  H  S  F  L  Q  :  N  M  E  K  V  Y  K  S  Y  I  M  K  L  D  R  S  M  S  L  I  M  T  T  S  L  M  T  S  T  P  K  M  G  A  N  V  *  L  L  F  S  C  I   : Y  Q  M  L  K  K  E  V  R  L  F  F  Q  Q  Q  R  E  T  S  V  L  V  L  G  G  M  S  C  Q  N  V  P  K  G  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43641" stop="43867"/>
                    <exon start="44004" stop="44094"/>
                    <exon start="44848" stop="44945"/>
                    <exon start="45505" stop="45602"/>
                    <exon start="46137" stop="46266"/>
                    <exon start="46396" stop="46498"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFGEDCSEAMAKGRLNRHQGKRSSTVVLVLSMLLMLTVVLLMLLALGIFNLPVGSDDESSSTVQDHIKFKRFNLDIGEGDGLGKRGEQWTEILSWEPRAFVYHNFLSKEECEYLINQAKPHMVKSSVVDSKTGQSKDSRVRTSSGMFLRRGRDKIIRNIEKRIADYTFIPAEHGEGLQVLHYEVGQKYEPHYDYFLDDFNTKNGGQRIATLLMYLSDVEEGGETVFPAAKGNFSSSPGWNELSECAKGG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="49720" PGL_stop="50424"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49720" e_stop="50424"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49720" e_stop="50424" e_length="705"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49720" stop="50424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331249" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGACTGCAGTGATGAAGAATACCACTTACAAGCGTTCCAGTAGCATTTCCTGGTGCAGGATGAACTACCTGTATTGAAGAAAACAAATCCCATTGAGCTTTTACAGAACAGTCAGGTAATAGTTCAAACATCCGCGTTATCAGTTTCAATCGATCTGTATCACTACTAGAACTAAGGAAAGGTTCAAGTACACTGACATCCAGAATGGAACAATTACGTCAAACTTCATCTATCAAAGTTCTCTTCCTGATTAACAATGAGTATCTACACGGTTAATGAATTTGTGCTCCAGAAATGGACAAAAAAATAACTCATCCAAGAGCACATAATGTAGATACCGATTATCGAACAAGACACCATAAAAAAGAACTAAGGTAGGTGATTCCACCGTGGTCCAATGCTTGAATATCTCCATTTACATGCTAAAAAAGCAAATTGATGTTCCATCAAAGATAGATGCACAACAAGCCCAAAACAACTACTTTCTCCGTTTCAATTTGTTTGTTTTACTTTCCTTTTTAGTCTGTTTCAAAAAGTGTTCTTTCTTTTATTCACCACCTCTGTGACAAGTCAAAATCAAACAAACAAATTAAAACGGAGGAAAGTAGATTATTCTAGAACTTACCATGTGAGCAGGCTTGTTAACAACAAGAACATGCTCATCTTCATACACTATATCCAATGGTATATCCTCTGGTTCAGCTC</gDNA_template>
            <first_frame> R  L  Q  *  *  R  I  P  L  T  S  V  P  V  A  F  P  G  A  G  *  T  T  C  I  E  E  N  K  S  H  *  A  F  T  E  Q  S  G  N  S  S  N  I  R  V  I  S  F  N  R  S  V  S  L  L  E  L  R  K  G  S  S  T  L  T  S  R  M  E  Q  L  R  Q  T  S  S  I  K  V  L  F  L  I  N  N  E  Y  L  H  G  *  *  I  C  A  P  E  M  D  K  K  I  T  H  P  R  A  H  N  V  D  T  D  Y  R  T  R  H  H  K  K  E  L  R  *  V  I  P  P  W  S  N  A  *  I  S  P  F  T  C  *  K  S  K  L  M  F  H  Q  R  *  M  H  N  K  P  K  T  T  T  F  S  V  S  I  C  L  F  Y  F  P  F  *  S  V  S  K  S  V  L  S  F  I  H  H  L  C  D  K  S  K  S  N  K  Q  I  K  T  E  E  S  R  L  F  *  N  L  P  C  E  Q  A  C  *  Q  Q  E  H  A  H  L  H  T  L  Y  P  M  V  Y  P  L  V  Q  L </first_frame>
            <second_frame>  D  C  S  D  E  E  Y  H  L  Q  A  F  Q  *  H  F  L  V  Q  D  E  L  P  V  L  K  K  T  N  P  I  E  L  L  Q  N  S  Q  V  I  V  Q  T  S  A  L  S  V  S  I  D  L  Y  H  Y  *  N  *  G  K  V  Q  V  H  *  H  P  E  W  N  N  Y  V  K  L  H  L  S  K  F  S  S  *  L  T  M  S  I  Y  T  V  N  E  F  V  L  Q  K  W  T  K  K  *  L  I  Q  E  H  I  M  *  I  P  I  I  E  Q  D  T  I  K  K  N  *  G  R  *  F  H  R  G  P  M  L  E  Y  L  H  L  H  A  K  K  A  N  *  C  S  I  K  D  R  C  T  T  S  P  K  Q  L  L  S  P  F  Q  F  V  C  F  T  F  L  F  S  L  F  Q  K  V  F  F  L  L  F  T  T  S  V  T  S  Q  N  Q  T  N  K  L  K  R  R  K  V  D  Y  S  R  T  Y  H  V  S  R  L  V  N  N  K  N  M  L  I  F  I  H  Y  I  Q  W  Y  I  L  W  F  S   </second_frame>
            <third_frame>   T  A  V  M  K  N  T  T  Y  K  R  S  S  S  I  S  W  C  R  M  N  Y  L  Y  *  R  K  Q  I  P  L  S  F  Y  R  T  V  R  *  *  F  K  H  P  R  Y  Q  F  Q  S  I  C  I  T  T  R  T  K  E  R  F  K  Y  T  D  I  Q  N  G  T  I  T  S  N  F  I  Y  Q  S  S  L  P  D  *  Q  *  V  S  T  R  L  M  N  L  C  S  R  N  G  Q  K  N  N  S  S  K  S  T  *  C  R  Y  R  L  S  N  K  T  P  *  K  R  T  K  V  G  D  S  T  V  V  Q  C  L  N  I  S  I  Y  M  L  K  K  Q  I  D  V  P  S  K  I  D  A  Q  Q  A  Q  N  N  Y  F  L  R  F  N  L  F  V  L  L  S  F  L  V  C  F  K  K  C  S  F  F  Y  S  P  P  L  *  Q  V  K  I  K  Q  T  N  *  N  G  G  K  *  I  I  L  E  L  T  M  *  A  G  L  L  T  T  R  T  C  S  S  S  Y  T  I  S  N  G  I  S  S  G  S  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50159" stop="50422"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSIKDRCTTSPKQLLSPFQFVCFTFLFSLFQKVFFLLFTTSVTSQNQTNKLKRRKVDYSRTYHVSRLVNNKNMLIFIHYIQWYILWFS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50082" stop="50285"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>201</number_coding_nucleotides>
                  <number_encoded_amino_acids>67</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTKVGDSTVVQCLNISIYMLKKQIDVPSKIDAQQAQNNYFLRFNLFVLLSFLVCFKKCSFFYSPPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="51227" PGL_stop="50681"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51227" e_stop="50681"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="51227" e_stop="50681" e_length="547"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51227" stop="50681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAAAGAAAAAAAAAAACCTCTATCTAAACGACACCGCTTTGTTTCATATCTTCTTTTTCACCTGTTCTGAGAATAACGCTAATCCTTTCCATCCTCACGGGACATTGGCGATGGTAGCACTCAATACTACGTCGTTCTCTTTGCTTCCACAAAACCCAAAACCAATTTCTCTTTCTAGGGTTTCAAGCTTCATTTGCAGAGCATTTACCAAATTCCCCGGAGACTCAGATTCCGACGACTCACCGGATGAAATTCCCGGCCGGAGGTCCAATTACTCCGGCGTCAAGCTCGAAGAAACAGTTGATAGCAAAACCGGAAAGCTCCGACTAGATTCATGGGTCAGTTCCCGGATCGACGGAGTTAGTAGAGCTCGTGTTCAGTCTAGCATCCGCTCTGGTCTTGTTTCCGTCAATGGACGCGTCACTGATAAGGTCCCACTGCTTTACACTCAAAATTATATATGTAGTAAAAAAGAATTTGAAATAATAATCCATCTTCCAATAATATTTGTTTTACTGGTTTTAAGCTTGATACGGAGTTTAAGAG</gDNA_template>
            <first_frame> *  K  K  K  K  N  L  Y  L  N  D  T  A  L  F  H  I  F  F  F  T  C  S  E  N  N  A  N  P  F  H  P  H  G  T  L  A  M  V  A  L  N  T  T  S  F  S  L  L  P  Q  N  P  K  P  I  S  L  S  R  V  S  S  F  I  C  R  A  F  T  K  F  P  G  D  S  D  S  D  D  S  P  D  E  I  P  G  R  R  S  N  Y  S  G  V  K  L  E  E  T  V  D  S  K  T  G  K  L  R  L  D  S  W  V  S  S  R  I  D  G  V  S  R  A  R  V  Q  S  S  I  R  S  G  L  V  S  V  N  G  R  V  T  D  K  V  P  L  L  Y  T  Q  N  Y  I  C  S  K  K  E  F  E  I  I  I  H  L  P  I  I  F  V  L  L  V  L  S  L  I  R  S  L  R  </first_frame>
            <second_frame>  K  R  K  K  K  T  S  I  *  T  T  P  L  C  F  I  S  S  F  S  P  V  L  R  I  T  L  I  L  S  I  L  T  G  H  W  R  W  *  H  S  I  L  R  R  S  L  C  F  H  K  T  Q  N  Q  F  L  F  L  G  F  Q  A  S  F  A  E  H  L  P  N  S  P  E  T  Q  I  P  T  T  H  R  M  K  F  P  A  G  G  P  I  T  P  A  S  S  S  K  K  Q  L  I  A  K  P  E  S  S  D  *  I  H  G  S  V  P  G  S  T  E  L  V  E  L  V  F  S  L  A  S  A  L  V  L  F  P  S  M  D  A  S  L  I  R  S  H  C  F  T  L  K  I  I  Y  V  V  K  K  N  L  K  *  *  S  I  F  Q  *  Y  L  F  Y  W  F  *  A  *  Y  G  V  *  E </second_frame>
            <third_frame>   K  E  K  K  K  P  L  S  K  R  H  R  F  V  S  Y  L  L  F  H  L  F  *  E  *  R  *  S  F  P  S  S  R  D  I  G  D  G  S  T  Q  Y  Y  V  V  L  F  A  S  T  K  P  K  T  N  F  S  F  *  G  F  K  L  H  L  Q  S  I  Y  Q  I  P  R  R  L  R  F  R  R  L  T  G  *  N  S  R  P  E  V  Q  L  L  R  R  Q  A  R  R  N  S  *  *  Q  N  R  K  A  P  T  R  F  M  G  Q  F  P  D  R  R  S  *  *  S  S  C  S  V  *  H  P  L  W  S  C  F  R  Q  W  T  R  H  *  *  G  P  T  A  L  H  S  K  L  Y  M  *  *  K  R  I  *  N  N  N  P  S  S  N  N  I  C  F  T  G  F  K  L  D  T  E  F  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51224" stop="50682"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKKKNLYLNDTALFHIFFFTCSENNANPFHPHGTLAMVALNTTSFSLLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVPLLYTQNYICSKKEFEIIIHLPIIFVLLVLSLIRSLR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="56326" PGL_stop="53430"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56326" e_stop="55585"/>
            <exon e_start="53548" e_stop="53430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.981" e_score="0.997"/>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="56326" e_stop="55585" e_length="742"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.981">
            <gDNA_intron_boundary i_start="55584" i_stop="53549" i_length="2036"/>
          </intron>
          <exon e_serial="2" e_score="0.958">
            <gDNA_exon_boundary e_start="53548" e_stop="53430" e_length="119"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56326" stop="55585"/>
              <exon start="53548" stop="53430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324839" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAAAAAATAAAAAAATCTCCTTTTTCTCAAAAAAAATAAAAATAAAAATAAAATCATCAATGGGTCTCTGTTTTACTAAAGAATGTTGTTGTCCACATTATAGAGATGTACCAATTTCATCATCCCCTGAATATAATCCAATTCCAGTATCATCTCAAAAATATCCACAAAATTCGATACCAGAACCAACACCAGCACCAGCACCAGCATCGACTTTTATGCCAAATCAAATTGGTCCAATATTAGGAAAACCATATGTAGACATAAAAACACTATATGATCTTGATAAAGAATTGGGAAGAGGTCAATTTGGGATAACCTATCTCTGTAGTGATAAATCAAGTGGATTGAAATACGCGTGTAAATCGATTTCAAGGAGGAAATTGGTAACACAAAAGGATATTGAAGATGTTAGAAGGGAAGTTACAATACTTCAATATTTAAGTGGACAACCAAATATTGTTGAATTTAAAGGTGCTTATGAGGATAAAAACAATCTACATTTGGTTATGGAGTTGTGTAGTGGTGGTGAACTTTTTGATAGGATTACAGCAAAAGGGAATTATTCAGAGAAAGAAGCTGCAAGAATTGGAAGACAAATAGTGAATGTGGTTCATGTTTGTCATTTTATGGGAGTTATGCATAGAGATCTTAAACCGGAAAATTTCTTGATGGTTAGTAAAGATGATGATTCTCCATTGAAGGCTACTGATTTTGGGCTCTCTGTTTTCATTGAAGAAG : GAAAAATTTACAAGGATATTGTTGGAAGTGCATATTATGTTGCCCCTGAGGTGTTGAAGCGCAAGTATGGGAAGGAGATAGATGTGTGGAGTGCTGGAGTTATTTTGTACATTTTATTA</gDNA_template>
            <first_frame> K  K  N  K  K  I  S  F  F  S  K  K  I  K  I  K  I  K  S  S  M  G  L  C  F  T  K  E  C  C  C  P  H  Y  R  D  V  P  I  S  S  S  P  E  Y  N  P  I  P  V  S  S  Q  K  Y  P  Q  N  S  I  P  E  P  T  P  A  P  A  P  A  S  T  F  M  P  N  Q  I  G  P  I  L  G  K  P  Y  V  D  I  K  T  L  Y  D  L  D  K  E  L  G  R  G  Q  F  G  I  T  Y  L  C  S  D  K  S  S  G  L  K  Y  A  C  K  S  I  S  R  R  K  L  V  T  Q  K  D  I  E  D  V  R  R  E  V  T  I  L  Q  Y  L  S  G  Q  P  N  I  V  E  F  K  G  A  Y  E  D  K  N  N  L  H  L  V  M  E  L  C  S  G  G  E  L  F  D  R  I  T  A  K  G  N  Y  S  E  K  E  A  A  R  I  G  R  Q  I  V  N  V  V  H  V  C  H  F  M  G  V  M  H  R  D  L  K  P  E  N  F  L  M  V  S  K  D  D  D  S  P  L  K  A  T  D  F  G  L  S  V  F  I  E  E   : G  K  I  Y  K  D  I  V  G  S  A  Y  Y  V  A  P  E  V  L  K  R  K  Y  G  K  E  I  D  V  W  S  A  G  V  I  L  Y  I  L  L </first_frame>
            <second_frame>  K  K  I  K  K  S  P  F  S  Q  K  K  *  K  *  K  *  N  H  Q  W  V  S  V  L  L  K  N  V  V  V  H  I  I  E  M  Y  Q  F  H  H  P  L  N  I  I  Q  F  Q  Y  H  L  K  N  I  H  K  I  R  Y  Q  N  Q  H  Q  H  Q  H  Q  H  R  L  L  C  Q  I  K  L  V  Q  Y  *  E  N  H  M  *  T  *  K  H  Y  M  I  L  I  K  N  W  E  E  V  N  L  G  *  P  I  S  V  V  I  N  Q  V  D  *  N  T  R  V  N  R  F  Q  G  G  N  W  *  H  K  R  I  L  K  M  L  E  G  K  L  Q  Y  F  N  I  *  V  D  N  Q  I  L  L  N  L  K  V  L  M  R  I  K  T  I  Y  I  W  L  W  S  C  V  V  V  V  N  F  L  I  G  L  Q  Q  K  G  I  I  Q  R  K  K  L  Q  E  L  E  D  K  *  *  M  W  F  M  F  V  I  L  W  E  L  C  I  E  I  L  N  R  K  I  S  *  W  L  V  K  M  M  I  L  H  *  R  L  L  I  L  G  S  L  F  S  L  K  K  :  E  K  F  T  R  I  L  L  E  V  H  I  M  L  P  L  R  C  *  S  A  S  M  G  R  R  *  M  C  G  V  L  E  L  F  C  T  F  Y   </second_frame>
            <third_frame>   K  K  *  K  N  L  L  F  L  K  K  N  K  N  K  N  K  I  I  N  G  S  L  F  Y  *  R  M  L  L  S  T  L  *  R  C  T  N  F  I  I  P  *  I  *  S  N  S  S  I  I  S  K  I  S  T  K  F  D  T  R  T  N  T  S  T  S  T  S  I  D  F  Y  A  K  S  N  W  S  N  I  R  K  T  I  C  R  H  K  N  T  I  *  S  *  *  R  I  G  K  R  S  I  W  D  N  L  S  L  *  *  *  I  K  W  I  E  I  R  V  *  I  D  F  K  E  E  I  G  N  T  K  G  Y  *  R  C  *  K  G  S  Y  N  T  S  I  F  K  W  T  T  K  Y  C  *  I  *  R  C  L  *  G  *  K  Q  S  T  F  G  Y  G  V  V  *  W  W  *  T  F  *  *  D  Y  S  K  R  E  L  F  R  E  R  S  C  K  N  W  K  T  N  S  E  C  G  S  C  L  S  F  Y  G  S  Y  A  *  R  S  *  T  G  K  F  L  D  G  *  *  R  *  *  F  S  I  E  G  Y  *  F  W  A  L  C  F  H  *  R  R :   K  N  L  Q  G  Y  C  W  K  C  I  L  C  C  P  *  G  V  E  A  Q  V  W  E  G  D  R  C  V  E  C  W  S  Y  F  V  H  F  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56326" stop="55585"/>
                    <exon start="53548" stop="53430"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>861</number_coding_nucleotides>
                  <number_encoded_amino_acids>287</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKNKKISFFSKKIKIKIKSSMGLCFTKECCCPHYRDVPISSSPEYNPIPVSSQKYPQNSIPEPTPAPAPASTFMPNQIGPILGKPYVDIKTLYDLDKELGRGQFGITYLCSDKSSGLKYACKSISRRKLVTQKDIEDVRREVTILQYLSGQPNIVEFKGAYEDKNNLHLVMELCSGGELFDRITAKGNYSEKEAARIGRQIVNVVHVCHFMGVMHRDLKPENFLMVSKDDDSPLKATDFGLSVFIEEGKIYKDIVGSAYYVAPEVLKRKYGKEIDVWSAGVILYILL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="60130" PGL_stop="60554"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60130" e_stop="60554"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="60130" e_stop="60554" e_length="425"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60130" stop="60554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338087" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTTTCAGAGAGAGTTTTTCAGCAGCTAAAAGAGAGAAAAAAGAGAGAAATTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGTCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACATCGAAGGGTTTTCCACGTAAATCTTGATG</gDNA_template>
            <first_frame> I  F  Q  R  E  F  F  S  S  *  K  R  E  K  R  E  K  F  A  V  K  N  P  A  I  T  T  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  L  *  L  G  T  D  R  V  G  F  G  G  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  W  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  T  L  C  F  V  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  *   </first_frame>
            <second_frame>  F  F  R  E  S  F  S  A  A  K  R  E  K  K  E  R  N  S  Q  S  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  I  F  D  *  E  L  T  E  L  D  L  V  V  C  S  F  S  F  A  V  V  N  S  S  C  E  I  G  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  *  H  F  V  L  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  H  R  R  V  F  H  V  N  L  D  </second_frame>
            <third_frame>   F  S  E  R  V  F  Q  Q  L  K  E  R  K  K  R  E  I  R  S  Q  K  S  S  H  N  N  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  S  L  I  R  N  *  Q  S  W  I  W  W  S  A  A  S  V  L  L  S  *  T  V  A  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  D  T  L  F  C  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  I  E  G  F  S  T  *  I  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0219H08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="60969" PGL_stop="60450"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60969" e_stop="60450"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="60969" e_stop="60450" e_length="520"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60969" stop="60450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAATATAATTTTCTGAATTCCCTAATTAGAATTTTTTATTGCATTCGATCTAAGGATTAAGGGTGTAGTCTATTAATCAATAATATACATTATGTATTATGATTCTCAAGTGACAAAAAATAGTTAGTAATTCTTTTTTATGTGTTTAAGCTTTAGTAAATAGAGTTATCTGTTACGTATGATAATAATAAGTAACAAGTATGCAATAAAATTAGTCAAAATATTGTTGGGAAAGACAAGACACTAACAAAGAATGCCTGACAGGATAACAGCGGAAGAATACCCAAGTCTATACTTTCCCTTTTCGATTTGAACCAAGAGAAAACAAACAACCACAAGCAATATGATAGTAAGGCAGCAAGTAATTCAACCAAACAAATATAACAAGACAATAATAAACCAATCACACAAGACATCAAGATTTACGTGGAAAACCCTTCGATGTGAAGAGTAAAAAACCACGGGACCAAAAGCTCCACTATAATCACCAAGAGTTACAATATTGTTCTCCAAAATTG</gDNA_template>
            <first_frame> F  N  I  I  F  *  I  P  *  L  E  F  F  I  A  F  D  L  R  I  K  G  V  V  Y  *  S  I  I  Y  I  M  Y  Y  D  S  Q  V  T  K  N  S  *  *  F  F  F  M  C  L  S  F  S  K  *  S  Y  L  L  R  M  I  I  I  S  N  K  Y  A  I  K  L  V  K  I  L  L  G  K  T  R  H  *  Q  R  M  P  D  R  I  T  A  E  E  Y  P  S  L  Y  F  P  F  S  I  *  T  K  R  K  Q  T  T  T  S  N  M  I  V  R  Q  Q  V  I  Q  P  N  K  Y  N  K  T  I  I  N  Q  S  H  K  T  S  R  F  T  W  K  T  L  R  C  E  E  *  K  T  T  G  P  K  A  P  L  *  S  P  R  V  T  I  L  F  S  K  I  </first_frame>
            <second_frame>  L  I  *  F  S  E  F  P  N  *  N  F  L  L  H  S  I  *  G  L  R  V  *  S  I  N  Q  *  Y  T  L  C  I  M  I  L  K  *  Q  K  I  V  S  N  S  F  L  C  V  *  A  L  V  N  R  V  I  C  Y  V  *  *  *  *  V  T  S  M  Q  *  N  *  S  K  Y  C  W  E  R  Q  D  T  N  K  E  C  L  T  G  *  Q  R  K  N  T  Q  V  Y  T  F  P  F  R  F  E  P  R  E  N  K  Q  P  Q  A  I  *  *  *  G  S  K  *  F  N  Q  T  N  I  T  R  Q  *  *  T  N  H  T  R  H  Q  D  L  R  G  K  P  F  D  V  K  S  K  K  P  R  D  Q  K  L  H  Y  N  H  Q  E  L  Q  Y  C  S  P  K  L </second_frame>
            <third_frame>   *  Y  N  F  L  N  S  L  I  R  I  F  Y  C  I  R  S  K  D  *  G  C  S  L  L  I  N  N  I  H  Y  V  L  *  F  S  S  D  K  K  *  L  V  I  L  F  Y  V  F  K  L  *  *  I  E  L  S  V  T  Y  D  N  N  K  *  Q  V  C  N  K  I  S  Q  N  I  V  G  K  D  K  T  L  T  K  N  A  *  Q  D  N  S  G  R  I  P  K  S  I  L  S  L  F  D  L  N  Q  E  K  T  N  N  H  K  Q  Y  D  S  K  A  A  S  N  S  T  K  Q  I  *  Q  D  N  N  K  P  I  T  Q  D  I  K  I  Y  V  E  N  P  S  M  *  R  V  K  N  H  G  T  K  S  S  T  I  I  T  K  S  Y  N  I  V  L  Q  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0219H08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="64375" PGL_stop="61601"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64375" e_stop="64051"/>
            <exon e_start="63176" e_stop="62670"/>
            <exon e_start="62536" e_stop="62206"/>
            <exon e_start="62136" e_stop="61601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="0.994"/>
          <exon-intron don_prob="0.888" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="64375" e_stop="64051" e_length="325"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64050" i_stop="63177" i_length="874"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="63176" e_stop="62670" e_length="507"/>
          </exon>
          <intron i_serial="2" don_prob="0.888" acc_prob="0.979">
            <gDNA_intron_boundary i_start="62669" i_stop="62537" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62536" e_stop="62206" e_length="331"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.992">
            <gDNA_intron_boundary i_start="62205" i_stop="62137" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="62136" e_stop="61601" e_length="536"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64375" stop="64051"/>
              <exon start="63176" stop="62670"/>
              <exon start="62536" stop="62206"/>
              <exon start="62136" stop="61601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317778" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAACTAGGCATAGCTATGTACGTTTAGGGAAGAGAGAGAAAAAAAATGAAAAATCAGAAATGCGTACAATTATAAAAGCACCTAATTCCAATGGTGAAATATCACACTAAGCTTTATTGAGAAAAAAAAATGGAGGAATTGGAGAAGAAGAATATTACTAGTATGAAGGAAGAAGAAGCAGAAGAAGAAATTGATAATAGTTTTGTACCTGTTTATCACTCTTTTGCTTCTAAAAGTTATCATTCTCACCTTGTTTCTGATGATTATTTGTCGATTTTAGCATCCAAAGATGGCGAATTTCTCCTTTCTCCCACCGGAGCTCAG : GTGAAAGTTTCGGAACTTGAGGGCAAAGTTGTTGGCCTTTACTTTTCAGCTAACTGGTATTCACCATGTACGAAGTTTACAAACCTGTTAGTCAATGTGTATCAGCAGCTTAAGGAATGCAGCAATATCAATCTCGGTTTCGAAATCGTCTTTGTTTCGTCTGATGAAGACTTAAATGCCTTCAATACTTATAGGTCATCAATGCCTTGGCTTGCAATTCCTTTCTCTGATTTGGAAACAAGGAGAGCCCTTACCCAAAAGTTTGATGTCGAAGGTATCCCTTGTTTGATAGTTCTACTACCTAACGATGACAAATTAGACACTGCAGTTATTAAAGACGGAGTTGAACTCGTGTATCGATATGGAGTCCAAGCTTTTCCGTTTACCAAAGAAAGGTTGGACGAGTTACGAAAGAAGGAGAAGGAGAAACGTGACAACCAGACATTGAGCAGTTTGCTAACACACGATGCCAGAGATGTTCTTTCGGGGCATCCTAGTCCTAAACAA : GTGTCTGTTGCTTCTTTAAAGGGGAAAACAGTTGGACTTTACTTCTCAGCTCAATGGTGCAATCCTGCGAAAAAATTTACTCCGAGGTTAATTTCAGTCTACAAAAAGATTAAGCAGCAGCTAGAGGGAAAGGATGATGAGGATTTCGAGATAGTGTTCGTATCAAGTGACCATAACCAAGTTGATTTCACAACGTATTTTGAGACCATGCCCTGGCTAGCAATCCCATTTGATGATCCAACAATCAAAGCTCTAGCTAAGTATTTTGATATCCGAGGGATTCCGAGCCTAGTGATATTGGGCCCTGATGGTAAAACAGTGACCAAACAAG : GTAGGAGCCTCATCAACTTATACAAAGAGAACGCTTACCCATTCACAAAGACTAGAATAGATATATTAGAGAAGCAAATGGATGAAATAGCAAAAGGCCTTCCTAAGACAGAGAACCATTCGGGCCATCGACACGAGCTCACTTTAGTACCAGAGGGCCATGGGGGTGGAGCTTTTATCTGTTGTGATTGTGATGAACAGGGCTATGGATGGGCTTACCAATGCCTTGAGTGTGGCTATGAGGTACATCCCAAGTGTGTGAAGCCCGTGCGCCACGACCCAGAAAACTAATATATTGGGCTGATCTTAGGTTCTTACATGTTATATGTAGAGATAAATAGGTAAAAGGATACCATGATGTATAATTGGGTATAAATCATGTCTTAATGACATGTTATTGTGAATTTTTAATGGGCCTTTGTTTATGGAATTCACAACTTGTAGTTGTTGGTTTGAGAAGTCATCAGATATGAGCCTTAAGAAAATCACAAATGTACATAAAAATGTTTTTATAATACTCCAGGACGAGTCATTATC</gDNA_template>
            <first_frame> Q  T  R  H  S  Y  V  R  L  G  K  R  E  K  K  N  E  K  S  E  M  R  T  I  I  K  A  P  N  S  N  G  E  I  S  H  *  A  L  L  R  K  K  N  G  G  I  G  E  E  E  Y  Y  *  Y  E  G  R  R  S  R  R  R  N  *  *  *  F  C  T  C  L  S  L  F  C  F  *  K  L  S  F  S  P  C  F  *  *  L  F  V  D  F  S  I  Q  R  W  R  I  S  P  F  S  H  R  S  S   : G  E  S  F  G  T  *  G  Q  S  C  W  P  L  L  F  S  *  L  V  F  T  M  Y  E  V  Y  K  P  V  S  Q  C  V  S  A  A  *  G  M  Q  Q  Y  Q  S  R  F  R  N  R  L  C  F  V  *  *  R  L  K  C  L  Q  Y  L  *  V  I  N  A  L  A  C  N  S  F  L  *  F  G  N  K  E  S  P  Y  P  K  V  *  C  R  R  Y  P  L  F  D  S  S  T  T  *  R  *  Q  I  R  H  C  S  Y  *  R  R  S  *  T  R  V  S  I  W  S  P  S  F  S  V  Y  Q  R  K  V  G  R  V  T  K  E  G  E  G  E  T  *  Q  P  D  I  E  Q  F  A  N  T  R  C  Q  R  C  S  F  G  A  S  *  S  *  T   : S  V  C  C  F  F  K  G  E  N  S  W  T  L  L  L  S  S  M  V  Q  S  C  E  K  I  Y  S  E  V  N  F  S  L  Q  K  D  *  A  A  A  R  G  K  G  *  *  G  F  R  D  S  V  R  I  K  *  P  *  P  S  *  F  H  N  V  F  *  D  H  A  L  A  S  N  P  I  *  *  S  N  N  Q  S  S  S  *  V  F  *  Y  P  R  D  S  E  P  S  D  I  G  P  *  W  *  N  S  D  Q  T  R :   *  E  P  H  Q  L  I  Q  R  E  R  L  P  I  H  K  D  *  N  R  Y  I  R  E  A  N  G  *  N  S  K  R  P  S  *  D  R  E  P  F  G  P  S  T  R  A  H  F  S  T  R  G  P  W  G  W  S  F  Y  L  L  *  L  *  *  T  G  L  W  M  G  L  P  M  P  *  V  W  L  *  G  T  S  Q  V  C  E  A  R  A  P  R  P  R  K  L  I  Y  W  A  D  L  R  F  L  H  V  I  C  R  D  K  *  V  K  G  Y  H  D  V  *  L  G  I  N  H  V  L  M  T  C  Y  C  E  F  L  M  G  L  C  L  W  N  S  Q  L  V  V  V  G  L  R  S  H  Q  I  *  A  L  R  K  S  Q  M  Y  I  K  M  F  L  *  Y  S  R  T  S  H  Y  </first_frame>
            <second_frame>  K  L  G  I  A  M  Y  V  *  G  R  E  R  K  K  M  K  N  Q  K  C  V  Q  L  *  K  H  L  I  P  M  V  K  Y  H  T  K  L  Y  *  E  K  K  M  E  E  L  E  K  K  N  I  T  S  M  K  E  E  E  A  E  E  E  I  D  N  S  F  V  P  V  Y  H  S  F  A  S  K  S  Y  H  S  H  L  V  S  D  D  Y  L  S  I  L  A  S  K  D  G  E  F  L  L  S  P  T  G  A  Q  :  V  K  V  S  E  L  E  G  K  V  V  G  L  Y  F  S  A  N  W  Y  S  P  C  T  K  F  T  N  L  L  V  N  V  Y  Q  Q  L  K  E  C  S  N  I  N  L  G  F  E  I  V  F  V  S  S  D  E  D  L  N  A  F  N  T  Y  R  S  S  M  P  W  L  A  I  P  F  S  D  L  E  T  R  R  A  L  T  Q  K  F  D  V  E  G  I  P  C  L  I  V  L  L  P  N  D  D  K  L  D  T  A  V  I  K  D  G  V  E  L  V  Y  R  Y  G  V  Q  A  F  P  F  T  K  E  R  L  D  E  L  R  K  K  E  K  E  K  R  D  N  Q  T  L  S  S  L  L  T  H  D  A  R  D  V  L  S  G  H  P  S  P  K  Q  :  V  S  V  A  S  L  K  G  K  T  V  G  L  Y  F  S  A  Q  W  C  N  P  A  K  K  F  T  P  R  L  I  S  V  Y  K  K  I  K  Q  Q  L  E  G  K  D  D  E  D  F  E  I  V  F  V  S  S  D  H  N  Q  V  D  F  T  T  Y  F  E  T  M  P  W  L  A  I  P  F  D  D  P  T  I  K  A  L  A  K  Y  F  D  I  R  G  I  P  S  L  V  I  L  G  P  D  G  K  T  V  T  K  Q   : G  R  S  L  I  N  L  Y  K  E  N  A  Y  P  F  T  K  T  R  I  D  I  L  E  K  Q  M  D  E  I  A  K  G  L  P  K  T  E  N  H  S  G  H  R  H  E  L  T  L  V  P  E  G  H  G  G  G  A  F  I  C  C  D  C  D  E  Q  G  Y  G  W  A  Y  Q  C  L  E  C  G  Y  E  V  H  P  K  C  V  K  P  V  R  H  D  P  E  N  *  Y  I  G  L  I  L  G  S  Y  M  L  Y  V  E  I  N  R  *  K  D  T  M  M  Y  N  W  V  *  I  M  S  *  *  H  V  I  V  N  F  *  W  A  F  V  Y  G  I  H  N  L  *  L  L  V  *  E  V  I  R  Y  E  P  *  E  N  H  K  C  T  *  K  C  F  Y  N  T  P  G  R  V  I  I </second_frame>
            <third_frame>   N  *  A  *  L  C  T  F  R  E  E  R  E  K  K  *  K  I  R  N  A  Y  N  Y  K  S  T  *  F  Q  W  *  N  I  T  L  S  F  I  E  K  K  K  W  R  N  W  R  R  R  I  L  L  V  *  R  K  K  K  Q  K  K  K  L  I  I  V  L  Y  L  F  I  T  L  L  L  L  K  V  I  I  L  T  L  F  L  M  I  I  C  R  F  *  H  P  K  M  A  N  F  S  F  L  P  P  E  L  R :   *  K  F  R  N  L  R  A  K  L  L  A  F  T  F  Q  L  T  G  I  H  H  V  R  S  L  Q  T  C  *  S  M  C  I  S  S  L  R  N  A  A  I  S  I  S  V  S  K  S  S  L  F  R  L  M  K  T  *  M  P  S  I  L  I  G  H  Q  C  L  G  L  Q  F  L  S  L  I  W  K  Q  G  E  P  L  P  K  S  L  M  S  K  V  S  L  V  *  *  F  Y  Y  L  T  M  T  N  *  T  L  Q  L  L  K  T  E  L  N  S  C  I  D  M  E  S  K  L  F  R  L  P  K  K  G  W  T  S  Y  E  R  R  R  R  R  N  V  T  T  R  H  *  A  V  C  *  H  T  M  P  E  M  F  F  R  G  I  L  V  L  N  K :   C  L  L  L  L  *  R  G  K  Q  L  D  F  T  S  Q  L  N  G  A  I  L  R  K  N  L  L  R  G  *  F  Q  S  T  K  R  L  S  S  S  *  R  E  R  M  M  R  I  S  R  *  C  S  Y  Q  V  T  I  T  K  L  I  S  Q  R  I  L  R  P  C  P  G  *  Q  S  H  L  M  I  Q  Q  S  K  L  *  L  S  I  L  I  S  E  G  F  R  A  *  *  Y  W  A  L  M  V  K  Q  *  P  N  K  :  V  G  A  S  S  T  Y  T  K  R  T  L  T  H  S  Q  R  L  E  *  I  Y  *  R  S  K  W  M  K  *  Q  K  A  F  L  R  Q  R  T  I  R  A  I  D  T  S  S  L  *  Y  Q  R  A  M  G  V  E  L  L  S  V  V  I  V  M  N  R  A  M  D  G  L  T  N  A  L  S  V  A  M  R  Y  I  P  S  V  *  S  P  C  A  T  T  Q  K  T  N  I  L  G  *  S  *  V  L  T  C  Y  M  *  R  *  I  G  K  R  I  P  *  C  I  I  G  Y  K  S  C  L  N  D  M  L  L  *  I  F  N  G  P  L  F  M  E  F  T  T  C  S  C  W  F  E  K  S  S  D  M  S  L  K  K  I  T  N  V  H  K  N  V  F  I  I  L  Q  D  E  S  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0219H08.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64254" stop="64051"/>
                    <exon start="63176" stop="62670"/>
                    <exon start="62536" stop="62206"/>
                    <exon start="62136" stop="61847"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1329</number_coding_nucleotides>
                  <number_encoded_amino_acids>443</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKMEELEKKNITSMKEEEAEEEIDNSFVPVYHSFASKSYHSHLVSDDYLSILASKDGEFLLSPTGAQVKVSELEGKVVGLYFSANWYSPCTKFTNLLVNVYQQLKECSNINLGFEIVFVSSDEDLNAFNTYRSSMPWLAIPFSDLETRRALTQKFDVEGIPCLIVLLPNDDKLDTAVIKDGVELVYRYGVQAFPFTKERLDELRKKEKEKRDNQTLSSLLTHDARDVLSGHPSPKQVSVASLKGKTVGLYFSAQWCNPAKKFTPRLISVYKKIKQQLEGKDDEDFEIVFVSSDHNQVDFTTYFETMPWLAIPFDDPTIKALAKYFDIRGIPSLVILGPDGKTVTKQGRSLINLYKENAYPFTKTRIDILEKQMDEIAKGLPKTENHSGHRHELTLVPEGHGGGAFICCDCDEQGYGWAYQCLECGYEVHPKCVKPVRHDPEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 25 chains have been computed
$ 
$ memory statistics:
$ 28744 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 1916 bytes was the average size of a spliced alignment
$ 19960 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1535 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 31 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:26:30
-->
