<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:37:14"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0223O22-gREoB/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0223O22-gREoB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-gREoB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4675-2" ref_strand="+" ref_description="SGN-M4675-2 C2_At1g74970-2 [cosii_markers]">
      <seq>cctcgtgccgcgaagatagagagagtcgaaaatggcgatttccgtggcttctctcgcctcatcttttgcttctctttcattttcttctcagatttctcaaaaaccctatgctgtatcccttgctcattcaaagcaattctctttctctctcacttccaaaatccctaggctcgttgtgtcagcttccgttgccgaagcaccggagacggaggaattggaaacgagagagaaccttttgaagctcgtaaaaagtagacttcctggtggtttcgctgcacagcctatttttggaactggtagacgtaaaagtgcaagtgctcgtgttgtccttcaggaaggttctggaaaaatcatcatcaattatcgtgatgctaaggaatatcttcaaggaaatccattgtggattcaatatgtcaaaactcctctggccactttaggatatgaggctagttatgacattttcgtcaaggtggaaggcggtggtctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggtggagggtctgctaactagagatgccagagttgtggagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgactcagattggggggaaaagagcatatcaatgatctgatttgactgtttaagatgaggaaatgtttcagatttatcatcactcaattgcttcttgtaaattttgtattagtccctactcagaattacaatttgttctgttgaaggtattttttgagtttagtttcttgttcaattcacatggtaaacgtacactgcgacagtttgatataattctggagatttttgtgccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-gREoB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40046" stop="43150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40330" g_stop="40708" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="376" r_length="376" r_score="0.923"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="665" r_length="289" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="703" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42808" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="704" r_stop="893" r_length="190" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="950" polyA_stop="961"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-M4675-2" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>897</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M4675-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40330" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCGAAAGAAGATAGATAGATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATT-GGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATC-CTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAAT</genome_strand>
        <mrna_strand>CCTCGTGCCGCGA-AGATAG--AGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTCGCCTCATCTTTTGCTTCTCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCAAAGCAATTCTCTTTCTCTCTCACTTCCAAAATCCCTAGGCTCGTTGTGTCAGCTTCCGTTGCCGAAGCACCGGAGACGGAGGAATTGGAAACGAGAGAGAACCTTTTGAAGCTCGTAAAAAGTAGACTTCCTGGTGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCAAGTGCTCGTGTTGTCCTTCAGGAAGGTTCTGGAAAAATCATCATCAATTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTGTGGATTCAATATGTCAAAACTCCTCTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTCGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGTGGAGGGTCTGCTAACTAGAGATGCCAGAGTTGTGGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACTCAGATTGGGGGGAAAAGAGCATATCAATGATCTGATTTGACTGTTTAAGATGAGGAAATGTTTCAGATTTATCATCACTCAATTGCTTC-TTGT--AAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGAAGGTATTTTTTGAGTTTAGTTTCTTGTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-gREoB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M4675" ref_strand="+" ref_description="SGN-M4675 C2_At1g74970 [cosii_markers]">
      <seq>gatagatagatagagagtcgaaaatggcgatttccgtggcttctcttgcttcatcttttgcttccctttcattttcttctcagatttctcaaaaaccctatgctgtatcccttgctcattcgaagcaattctctttctctctcgcttccaaaatctctacgcttgtagtgtcagcttctgttgctgaagcaccggagacggaggaattggaaaccagagagaatcttttgaagcttgtgaaaagtagacttcctggaggtttcgctgcacagcctatttttggaactggtagacgtaaaagtgctagtgctcgtgttgttcttcaggaaggttctggaaaaatcatcatcaactatcgtgatgctaaggaatatcttcaaggaaatccattatggattcaatatgtcaaaactccactggccactttaggatatgaggctagttatgacatttttgtcaaggtggaaggcggtggtctttctgggcaggctcaagcaatttcccttggcattgctcgtgcactcctaaaggttagtgagagccatagaaaaccattgagggaggagggtctgttaactagagatgccagagttgttgagcggaagaaagttggtctcaagaaggctcgcaagcgtccacaattttccaagcgttgaggttggtacttactcactgtggcagcatttggtagaaagatttggtggtttattgacccagattgggaaaaaagagcatatcaatgatctgttttgactgttgaagatgagaaaatgtttctgaattatcatcctcaattgcttctttgtaaaaattttgtattagtccctactcagaattacaatttgttctgttgatggtattttttgagtttagtttcttgttcaatgtttaatataattctggagatttttgtgcctaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-gREoB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="40041" stop="43150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40341" g_stop="40708" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="368" r_length="368" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42060" g_stop="42348" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="657" r_length="289" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42449" g_stop="42486" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="695" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131">
            <donor d_prob="0.990" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="42618" g_stop="42846" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="924" r_length="229" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="925" polyA_stop="935"/>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-M4675" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>924</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M4675" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40341" e_stop="40708"/>
          <exon e_start="42060" e_stop="42348"/>
          <exon e_start="42449" e_stop="42486"/>
          <exon e_start="42618" e_stop="42846"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGATAGATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAGGTGTTTGTCTATCTCAATTTCACTTCTTTACTTGCAGTTAATGTATGATTTTCTCAATAAAAATTGCATTTTTTAAATTGGGTATTCAGTTTGGCAAGTACAATTGCAGAAAGTAGGATTGCATTGTTCTCGTTACCATTAAATTAGGTCTTGTGATAGCACTGTTCTCCAGGATTTCCGTGTGTTTGAATAGAGTTTGAAGGTGAAACTTGAAAATATTGAGTTTTTGATTCAGTTGTGTTTGGACATGCATTTTACTTGGAAAAAATGGAACTTTTGTGAGTGAAAGTCCCCAAAACCCAAAAATTGGTCTTCTGATCAAATTTCAAGGCCGAGCTAATATTTGAAGATAATTTTTTAAATCTATGACCAAACACTAGCTAAATGTGATGTTTCGAGAAGCTAATGTGCCTTAATTGCTAAAGTGATTAGTATTTGATGAAATGGATCTATTAGAGATGAATAGCTTCATATAGCTAATCCCAACTAGTTTGCCATGAAGCTATACCGTGTTCCTGAGGAATTATCTGCTATTAGAGGAAACATGATAAGAAAAAATGAAAGATTATTGCAGATGGTAATTTAATGAAGGTTTCCAGTGGTTTCTAATATCTGCATTAGGTAATATGATGCTTAGTATCATATATGACACGGTTAGCCAATTTGTTTATCTGGTTTGACCATGATTCTCATATGTCTCTTTTAGAAGTTGCTGGTTGCTGAAAATGGTCACTTCAAATCAATGTAGCTAGAAAGCTTTAGAAAGGCATATCGTACTTCATAATGTTCTGTGTGATGAAATTCATTATCGAGGGAAAACTCTGTTAAAAGTGTATAGAGATCGTAAAGTAGAAAATCCAGCCTTGAAAAGCAAATAGAACATAGAAGCAGGAAGCATACTGCTGATACCTTTGAGTTTCTTGGGAAATGCATGCATAAACTATTTTTGTGGATCAGTGGTGCATATAACAGAACCATGAGAGGAACACAACTTCTCCGTTTCAAGTTCCGTAAATAAAAGCATGGCAGCAGAGGAACAATCAAATTAGATAAGTAGGATGTGCTAAGTTCTTATAAAGAAGTAACCTGTGTTAAGCAGACTGGAAAACTCCCGAGATCCAAAAGGTGTGTGAAATTTTTGTGTTGTTGCTATGTGAATAGAATTGTTATTTTTTGATAAGGAACCACACAAGTGTTTTTAATATTATTGAGGTCTCTATACTCGAGGTCCGACGATGCAAATCATCAACATTCTGATTAACGCTGCCTGCGTCCTTTTTTATGCTATCCTTTTATTCATCACTTTGTTGCTTTTGACTATATGAGATTTGACGTATGTCATGATTTGCAGGAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAGGTTACACTCTGAATATTATCTTTTCCTTCTTTTCTTTGTGCGCTATTTCACTGAAGGACACATGTATGAGAGCTTCTAATTCTTTGCTTTCGCAGTCCAGGTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAGGTATGTAAAATCGTCATGCGTTATAGTTGTAGTGAGTTAAAGATAGATTAAGCAAAAAAACTGAATGAGGATTTACATAGGTGTTATCCAATATTTGTGTTTGTAATCCGTTTTCTACTTTTGGTTCACAGATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAA</genome_strand>
        <mrna_strand>GATAGATAGATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGTGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG....................................................................................................GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG...................................................................................................................................ATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0223O22-gREoB/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1690" ref_strand="+" ref_description="SGN-M1690 T0974 [cos_markers]">
      <seq>gaagtaactaccggcgaaactaacacaatctatccatctaagccgcctttcacagaaaaccatgtccttcctctctcccatattgacaccgatcggaacctcaatttcactttccgatacctccgtgtctacgtcaatgacgacaccacatcagacccatatgaagttgtcacctcctccctctccgccgctctcgtccactactaccaattcgccggctctctccgccgtcgtccatcggacaaccgtctagagcttcactgtcaagtgggggatggcgttcccgtaattccgtcgacggtggattgtaccttggcttcaatgaactacctggatgatccggattataacttggctgagaagctggtacccgacccgagagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0223O22-gREoB/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0223O22.1" temp_strand="+" temp_description="C04HBa0223O22.1  CU459025.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0223O22 sequenced_by:sanger upload_account_name:uk">
        <position start="68746" stop="69729"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69046" g_stop="69429" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0223O22.1" gen_strand="+" ref_id="SGN-M1690" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0223O22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1690" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69046" e_stop="69429"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGAT</genome_strand>
        <mrna_strand>GAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="40330" PGL_stop="42846"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40330" e_stop="40708"/>
            <exon e_start="42060" e_stop="42348"/>
            <exon e_start="42449" e_stop="42486"/>
            <exon e_start="42618" e_stop="42846"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.000" e_score="0.997"/>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40330" e_stop="40708" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40709" i_stop="42059" i_length="1351"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="42060" e_stop="42348" e_length="289"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42349" i_stop="42448" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42449" e_stop="42486" e_length="38"/>
          </exon>
          <intron i_serial="3" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="42487" i_stop="42617" i_length="131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="42618" e_stop="42846" e_length="229"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40330" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4675-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40341" stop="40708"/>
              <exon start="42060" stop="42348"/>
              <exon start="42449" stop="42486"/>
              <exon start="42618" stop="42846"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M4675" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCGAAAGAAGATAGATAGATAGAGAGTCGAAAATGGCGATTTCCGTGGCTTCTCTTGCTTCATCTTTTGCTTCCCTTTCATTTTCTTCTCAGATTTCTCAAAAACCCTATGCTGTATCCCTTGCTCATTCGAAGCAATTCTCTTTCTCTCTCGCTTCCAAAATCTCTACGCTTGTAGTGTCAGCTTCTGTTGCTGAAGCACCGGAGACGGAGGAATTGGAAACCAGAGAGAATCTTTTGAAGCTTGTGAAAAGTAGACTTCCTGGAGGTTTCGCTGCACAGCCTATTTTTGGAACTGGTAGACGTAAAAGTGCTAGTGCTCGTGTTGTTCTTCAGGAAGGTTCTGGAAAAATCATCATCAACTATCGTGATGCTAAG : GAATATCTTCAAGGAAATCCATTATGGATTCAATATGTCAAAACTCCACTGGCCACTTTAGGATATGAGGCTAGTTATGACATTTTTGTCAAGGTGGAAGGCGGTGGTCTTTCTGGGCAGGCTCAAGCAATTTCCCTTGGCATTGCTCGTGCACTCCTAAAGGTTAGCGAGAGCCATAGAAAACCATTGAGGGAGGAGGGTCTGTTAACTAGAGATGCCAGAGTTGTTGAGCGGAAGAAAGTTGGTCTCAAGAAGGCTCGCAAGCGTCCACAATTTTCCAAGCGTTGAG : GTTGGTACTTACTCACTGTGGCAGCATTTGGTAGAAAG : ATTTGGTGGTTTATTGACCCAGATTGGGAAAAAAGAGCATATCAATGATCTGTTTTGACTGTTGAAGATGAGAAAATGTTTCTGAATTATCATCCTCAATTGCTTCTTTGTAAAAATTTTGTATTAGTCCCTACTCAGAATTACAATTTGTTCTGTTGATGGTATTTTTTGAGTTTAGTTTCTTGTTCAATGTTTAATATAATTCTGGAGATTTTTGTGCCTAAAAAAA</gDNA_template>
            <first_frame> L  R  K  K  I  D  R  *  R  V  E  N  G  D  F  R  G  F  S  C  F  I  F  C  F  P  F  I  F  F  S  D  F  S  K  T  L  C  C  I  P  C  S  F  E  A  I  L  F  L  S  R  F  Q  N  L  Y  A  C  S  V  S  F  C  C  *  S  T  G  D  G  G  I  G  N  Q  R  E  S  F  E  A  C  E  K  *  T  S  W  R  F  R  C  T  A  Y  F  W  N  W  *  T  *  K  C  *  C  S  C  C  S  S  G  R  F  W  K  N  H  H  Q  L  S  *  C  *   : G  I  S  S  R  K  S  I  M  D  S  I  C  Q  N  S  T  G  H  F  R  I  *  G  *  L  *  H  F  C  Q  G  G  R  R  W  S  F  W  A  G  S  S  N  F  P  W  H  C  S  C  T  P  K  G  *  R  E  P  *  K  T  I  E  G  G  G  S  V  N  *  R  C  Q  S  C  *  A  E  E  S  W  S  Q  E  G  S  Q  A  S  T  I  F  Q  A  L  R :   L  V  L  T  H  C  G  S  I  W  *  K   : D  L  V  V  Y  *  P  R  L  G  K  K  S  I  S  M  I  C  F  D  C  *  R  *  E  N  V  S  E  L  S  S  S  I  A  S  L  *  K  F  C  I  S  P  Y  S  E  L  Q  F  V  L  L  M  V  F  F  E  F  S  F  L  F  N  V  *  Y  N  S  G  D  F  C  A  *  K   </first_frame>
            <second_frame>  F  E  R  R  *  I  D  R  E  S  K  M  A  I  S  V  A  S  L  A  S  S  F  A  S  L  S  F  S  S  Q  I  S  Q  K  P  Y  A  V  S  L  A  H  S  K  Q  F  S  F  S  L  A  S  K  I  S  T  L  V  V  S  A  S  V  A  E  A  P  E  T  E  E  L  E  T  R  E  N  L  L  K  L  V  K  S  R  L  P  G  G  F  A  A  Q  P  I  F  G  T  G  R  R  K  S  A  S  A  R  V  V  L  Q  E  G  S  G  K  I  I  I  N  Y  R  D  A  K  :  E  Y  L  Q  G  N  P  L  W  I  Q  Y  V  K  T  P  L  A  T  L  G  Y  E  A  S  Y  D  I  F  V  K  V  E  G  G  G  L  S  G  Q  A  Q  A  I  S  L  G  I  A  R  A  L  L  K  V  S  E  S  H  R  K  P  L  R  E  E  G  L  L  T  R  D  A  R  V  V  E  R  K  K  V  G  L  K  K  A  R  K  R  P  Q  F  S  K  R  *   : G  W  Y  L  L  T  V  A  A  F  G  R  K  :  I  W  W  F  I  D  P  D  W  E  K  R  A  Y  Q  *  S  V  L  T  V  E  D  E  K  M  F  L  N  Y  H  P  Q  L  L  L  C  K  N  F  V  L  V  P  T  Q  N  Y  N  L  F  C  *  W  Y  F  L  S  L  V  S  C  S  M  F  N  I  I  L  E  I  F  V  P  K  K  </second_frame>
            <third_frame>   S  K  E  D  R  *  I  E  S  R  K  W  R  F  P  W  L  L  L  L  H  L  L  L  P  F  H  F  L  L  R  F  L  K  N  P  M  L  Y  P  L  L  I  R  S  N  S  L  S  L  S  L  P  K  S  L  R  L  *  C  Q  L  L  L  L  K  H  R  R  R  R  N  W  K  P  E  R  I  F  *  S  L  *  K  V  D  F  L  E  V  S  L  H  S  L  F  L  E  L  V  D  V  K  V  L  V  L  V  L  F  F  R  K  V  L  E  K  S  S  S  T  I  V  M  L  R :   N  I  F  K  E  I  H  Y  G  F  N  M  S  K  L  H  W  P  L  *  D  M  R  L  V  M  T  F  L  S  R  W  K  A  V  V  F  L  G  R  L  K  Q  F  P  L  A  L  L  V  H  S  *  R  L  A  R  A  I  E  N  H  *  G  R  R  V  C  *  L  E  M  P  E  L  L  S  G  R  K  L  V  S  R  R  L  A  S  V  H  N  F  P  S  V  E  :  V  G  T  Y  S  L  W  Q  H  L  V  E  R :   F  G  G  L  L  T  Q  I  G  K  K  E  H  I  N  D  L  F  *  L  L  K  M  R  K  C  F  *  I  I  I  L  N  C  F  F  V  K  I  L  Y  *  S  L  L  R  I  T  I  C  S  V  D  G  I  F  *  V  *  F  L  V  Q  C  L  I  *  F  W  R  F  L  C  L  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40346" stop="40708"/>
                    <exon start="42060" stop="42347"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>648</number_coding_nucleotides>
                  <number_encoded_amino_acids>216</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IDRESKMAISVASLASSFASLSFSSQISQKPYAVSLAHSKQFSFSLASKISTLVVSASVAEAPETEELETRENLLKLVKSRLPGGFAAQPIFGTGRRKSASARVVLQEGSGKIIINYRDAKEYLQGNPLWIQYVKTPLATLGYEASYDIFVKVEGGGLSGQAQAISLGIARALLKVSESHRKPLREEGLLTRDARVVERKKVGLKKARKRPQFSKR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="69046" PGL_stop="69429"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69046" e_stop="69429"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69046" e_stop="69429" e_length="384"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69046" stop="69429"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1690" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGTAACTACCGGCGAAACTAACACAATCTATCCATCTAAGCCGCCTTTCACAGAAAACCATGTCCTTCCTCTCTCCCATATTGACACCGATCGGAACCTCAATTTCACTTTCCGATACCTCCGTGTCTACGTCAATGACGACACCACATCAGACCCATATGAAGTTGTCACCTCCTCCCTCTCCGCCGCTCTCGTCCACTACTACCAATTCGCCGGCTCTCTCCGCCGTCGTCCATCGGACAACCGTCTAGAGCTTCACTGTCAAGTGGGGGATGGCGTTCCCGTAATTCCGTCGACGGTGGATTGTACCTTGGCTTCAATGAACTACCTGGATGATCCGGATTATAACTTGGCTGAGAAGCTGGTACCCGACCCGAGAGAT</gDNA_template>
            <first_frame> E  V  T  T  G  E  T  N  T  I  Y  P  S  K  P  P  F  T  E  N  H  V  L  P  L  S  H  I  D  T  D  R  N  L  N  F  T  F  R  Y  L  R  V  Y  V  N  D  D  T  T  S  D  P  Y  E  V  V  T  S  S  L  S  A  A  L  V  H  Y  Y  Q  F  A  G  S  L  R  R  R  P  S  D  N  R  L  E  L  H  C  Q  V  G  D  G  V  P  V  I  P  S  T  V  D  C  T  L  A  S  M  N  Y  L  D  D  P  D  Y  N  L  A  E  K  L  V  P  D  P  R  D </first_frame>
            <second_frame>  K  *  L  P  A  K  L  T  Q  S  I  H  L  S  R  L  S  Q  K  T  M  S  F  L  S  P  I  L  T  P  I  G  T  S  I  S  L  S  D  T  S  V  S  T  S  M  T  T  P  H  Q  T  H  M  K  L  S  P  P  P  S  P  P  L  S  S  T  T  T  N  S  P  A  L  S  A  V  V  H  R  T  T  V  *  S  F  T  V  K  W  G  M  A  F  P  *  F  R  R  R  W  I  V  P  W  L  Q  *  T  T  W  M  I  R  I  I  T  W  L  R  S  W  Y  P  T  R  E   </second_frame>
            <third_frame>   S  N  Y  R  R  N  *  H  N  L  S  I  *  A  A  F  H  R  K  P  C  P  S  S  L  P  Y  *  H  R  S  E  P  Q  F  H  F  P  I  P  P  C  L  R  Q  *  R  H  H  I  R  P  I  *  S  C  H  L  L  P  L  R  R  S  R  P  L  L  P  I  R  R  L  S  P  P  S  S  I  G  Q  P  S  R  A  S  L  S  S  G  G  W  R  S  R  N  S  V  D  G  G  L  Y  L  G  F  N  E  L  P  G  *  S  G  L  *  L  G  *  E  A  G  T  R  P  E  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0223O22.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69046" stop="69429"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>384</number_coding_nucleotides>
                  <number_encoded_amino_acids>128</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVTTGETNTIYPSKPPFTENHVLPLSHIDTDRNLNFTFRYLRVYVNDDTTSDPYEVVTSSLSAALVHYYQFAGSLRRRPSDNRLELHCQVGDGVPVIPSTVDCTLASMNYLDDPDYNLAEKLVPDPRD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 71 chains have been computed
$ 
$ memory statistics:
$ 5832 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1944 bytes was the average size of a spliced alignment
$ 6800 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3400 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 72 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:37:28
-->
