<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:31:47"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E551027" ref_strand="+" ref_description="SGN-E551027 [TUS-54-N5]">
      <seq>tctcgatgcatttgccatggtttatagccgctttgatatgaaaaatgagactgcttctcttttggagtcacgagcacaccaatcttgtaaggagtggtccctccattctgacaaggatcagaccgatgagctcttggcttccatggggtacttcattgaagctgctgaagtttactcctccattgatgctgggagcaaaacacgccaaagttgtgctcaggcattacttctctatcttcagattcggatgccagacttgcactttatcaatctatctgaaactaatgcacggagggccttggtcgaacaaacccgtttccaagaagcactaattgttgctgaagcttatggtcttaaccagccaggtgaatgggctctagtactttggaatcaaatgctaagaccagagctcatcgaacggtttatggctgagtttgtttgtgtgctcccccttcaaccctcaatgcttcttgaacttgctagattttacagggctgaagtggctgcaaggcgggatcagtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="29013" stop="30290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29313" g_stop="29331" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29332" i_stop="29484" i_length="153">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29485" g_stop="29990" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="525" r_length="506" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E551027" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E551027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29313" e_stop="29331"/>
          <exon e_start="29485" e_stop="29990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGATGCATTTGCCATGGTTTGTACTTGTGCAATTTCATGTTAATAGATGTTTTATCCTCCCCCTTGATACAATTTGATTTTTCTACCAAAAAATATTATCATTTCCTCAAAGCAGAAAAAATGCACCTTTTTGAGGGTAAATAACATGCACCTCTTTATTTCCCCTTAGGTTTATAGCCGCTTTGATATGAAAAATGAGACTGCTTCTCTTTTGGAGTCACGAGCACACCAATCTTGTAAGGAGTGGTCCCTCCATTCTGACAAGGATCAGACCGATGAGCTCTTGGCTTCCATGGGGTACTTCATTGAAGCTGCTGAAGTTTACTCCTCCATTGATGCTGGGAGCAAAACACGCCAAAGTTGTGCTCAGGCATTACTTCTCTATCTTCAGATTCGGATGCCAGACTTGCACTTTATCAATCTATCTGAAACTAATGCACGGAGGGCCTTGGTCGAACAAACCCGTTTCCAAGAAGCACTAATTGTTGCTGAAGCTTATGGTCTTAACCAGCCAGGTGAATGGGCTCTAGTACTTTGGAATCAAATGCTAAGACCAGAGCTCATCGAACGGTTTATGGCTGAGTTTGTTTGTGTGCTCCCCCTTCAACCCTCAATGCTTCTTGAACTTGCTAGATTTTACAGGGCTGAAGTGGCTGCAAGGGGGGATCAGTCACA</genome_strand>
        <mrna_strand>TCTCGATGCATTTGCCATG.........................................................................................................................................................GTTTATAGCCGCTTTGATATGAAAAATGAGACTGCTTCTCTTTTGGAGTCACGAGCACACCAATCTTGTAAGGAGTGGTCCCTCCATTCTGACAAGGATCAGACCGATGAGCTCTTGGCTTCCATGGGGTACTTCATTGAAGCTGCTGAAGTTTACTCCTCCATTGATGCTGGGAGCAAAACACGCCAAAGTTGTGCTCAGGCATTACTTCTCTATCTTCAGATTCGGATGCCAGACTTGCACTTTATCAATCTATCTGAAACTAATGCACGGAGGGCCTTGGTCGAACAAACCCGTTTCCAAGAAGCACTAATTGTTGCTGAAGCTTATGGTCTTAACCAGCCAGGTGAATGGGCTCTAGTACTTTGGAATCAAATGCTAAGACCAGAGCTCATCGAACGGTTTATGGCTGAGTTTGTTTGTGTGCTCCCCCTTCAACCCTCAATGCTTCTTGAACTTGCTAGATTTTACAGGGCTGAAGTGGCTGCAAGGCGGGATCAGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E688787" ref_strand="+" ref_description="SGN-E688787 [t3_tus_54_N05]">
      <seq>tctcgatgcatttgccatggtttatagccgctttgatatgaaaaatgagactgcttctcttttggagtcacgagcacaccaatcttgtaaggagtggtccctccattctgacaaggatcagaccgatgagctcttggcttccatggggtacttcattgaagctgctgaagtttactcctccattgatgctgggagcaaaacacgccaaagttgtgctcaggcattacttctctatcttcagattcggatgccagacttgcactttatcaatctatctgaaactaatgcacggagggccttggtcgaacaaacccgtttccaagaagcactaattgttgctgaagcttatggtcttaaccagccaggtgaatgggctctagtactttggaatcaaatgctaagaccagagctcatcgaacggtttatggctgagtttgtttgtgtgctcccccttcaaccctcaatgcttcttgaacttgctagattttacagggctgaagtggctgcaaggcgggatcagtcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="29013" stop="30290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29313" g_stop="29331" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29332" i_stop="29484" i_length="153">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29485" g_stop="29990" g_length="506"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="525" r_length="506" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E688787" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E688787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29313" e_stop="29331"/>
          <exon e_start="29485" e_stop="29990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGATGCATTTGCCATGGTTTGTACTTGTGCAATTTCATGTTAATAGATGTTTTATCCTCCCCCTTGATACAATTTGATTTTTCTACCAAAAAATATTATCATTTCCTCAAAGCAGAAAAAATGCACCTTTTTGAGGGTAAATAACATGCACCTCTTTATTTCCCCTTAGGTTTATAGCCGCTTTGATATGAAAAATGAGACTGCTTCTCTTTTGGAGTCACGAGCACACCAATCTTGTAAGGAGTGGTCCCTCCATTCTGACAAGGATCAGACCGATGAGCTCTTGGCTTCCATGGGGTACTTCATTGAAGCTGCTGAAGTTTACTCCTCCATTGATGCTGGGAGCAAAACACGCCAAAGTTGTGCTCAGGCATTACTTCTCTATCTTCAGATTCGGATGCCAGACTTGCACTTTATCAATCTATCTGAAACTAATGCACGGAGGGCCTTGGTCGAACAAACCCGTTTCCAAGAAGCACTAATTGTTGCTGAAGCTTATGGTCTTAACCAGCCAGGTGAATGGGCTCTAGTACTTTGGAATCAAATGCTAAGACCAGAGCTCATCGAACGGTTTATGGCTGAGTTTGTTTGTGTGCTCCCCCTTCAACCCTCAATGCTTCTTGAACTTGCTAGATTTTACAGGGCTGAAGTGGCTGCAAGGGGGGATCAGTCACA</genome_strand>
        <mrna_strand>TCTCGATGCATTTGCCATG.........................................................................................................................................................GTTTATAGCCGCTTTGATATGAAAAATGAGACTGCTTCTCTTTTGGAGTCACGAGCACACCAATCTTGTAAGGAGTGGTCCCTCCATTCTGACAAGGATCAGACCGATGAGCTCTTGGCTTCCATGGGGTACTTCATTGAAGCTGCTGAAGTTTACTCCTCCATTGATGCTGGGAGCAAAACACGCCAAAGTTGTGCTCAGGCATTACTTCTCTATCTTCAGATTCGGATGCCAGACTTGCACTTTATCAATCTATCTGAAACTAATGCACGGAGGGCCTTGGTCGAACAAACCCGTTTCCAAGAAGCACTAATTGTTGCTGAAGCTTATGGTCTTAACCAGCCAGGTGAATGGGCTCTAGTACTTTGGAATCAAATGCTAAGACCAGAGCTCATCGAACGGTTTATGGCTGAGTTTGTTTGTGTGCTCCCCCTTCAACCCTCAATGCTTCTTGAACTTGCTAGATTTTACAGGGCTGAAGTGGCTGCAAGGCGGGATCAGTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E257153" ref_strand="+" ref_description="SGN-E257153 [cLEG-46-M5]">
      <seq>ctcgatgcatttgccatggtttatagccgctttgatatgaaaaatgagactgcttctcttttggagtcacgagcacaccaatcttgtaaggagtggtccctccattctgacaaggatcagaccgatgagctcttggcttccatggggtacttcattgaagctgctgaagtttactcctccattgatgctgggagcaaaacacgccaaagttgtgctcaggcattacttctctatcttcagattcggatgccagacttgcactttatcaatctatctgaaactaatgcacggagggccttggtcgaacaaacccgtttccaagaagcactaattgttgctgaagcttatggtcttaaccacccaggtgaatgggctctagtactttggaatcaaatgctaagaccagagctcatcgaacgggttatggctgagtttgtttgtgtgctcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="29014" stop="30216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29314" g_stop="29331" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29332" i_stop="29484" i_length="153">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.772" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29485" g_stop="29916" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="450" r_length="432" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E257153" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29314" e_stop="29331"/>
          <exon e_start="29485" e_stop="29916"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGATGCATTTGCCATGGTTTGTACTTGTGCAATTTCATGTTAATAGATGTTTTATCCTCCCCCTTGATACAATTTGATTTTTCTACCAAAAAATATTATCATTTCCTCAAAGCAGAAAAAATGCACCTTTTTGAGGGTAAATAACATGCACCTCTTTATTTCCCCTTAGGTTTATAGCCGCTTTGATATGAAAAATGAGACTGCTTCTCTTTTGGAGTCACGAGCACACCAATCTTGTAAGGAGTGGTCCCTCCATTCTGACAAGGATCAGACCGATGAGCTCTTGGCTTCCATGGGGTACTTCATTGAAGCTGCTGAAGTTTACTCCTCCATTGATGCTGGGAGCAAAACACGCCAAAGTTGTGCTCAGGCATTACTTCTCTATCTTCAGATTCGGATGCCAGACTTGCACTTTATCAATCTATCTGAAACTAATGCACGGAGGGCCTTGGTCGAACAAACCCGTTTCCAAGAAGCACTAATTGTTGCTGAAGCTTATGGTCTTAACCAGCCAGGTGAATGGGCTCTAGTACTTTGGAATCAAATGCTAAGACCAGAGCTCATCGAACGGTTTATGGCTGAGTTTGTTTGTGTGCTCCCC</genome_strand>
        <mrna_strand>CTCGATGCATTTGCCATG.........................................................................................................................................................GTTTATAGCCGCTTTGATATGAAAAATGAGACTGCTTCTCTTTTGGAGTCACGAGCACACCAATCTTGTAAGGAGTGGTCCCTCCATTCTGACAAGGATCAGACCGATGAGCTCTTGGCTTCCATGGGGTACTTCATTGAAGCTGCTGAAGTTTACTCCTCCATTGATGCTGGGAGCAAAACACGCCAAAGTTGTGCTCAGGCATTACTTCTCTATCTTCAGATTCGGATGCCAGACTTGCACTTTATCAATCTATCTGAAACTAATGCACGGAGGGCCTTGGTCGAACAAACCCGTTTCCAAGAAGCACTAATTGTTGCTGAAGCTTATGGTCTTAACCACCCAGGTGAATGGGCTCTAGTACTTTGGAATCAAATGCTAAGACCAGAGCTCATCGAACGGGTTATGGCTGAGTTTGTTTGTGTGCTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E341972" ref_strand="+" ref_description="SGN-E341972 [cTOF-10-I13]">
      <seq>gcatcgggccaagagtgctttggataggcattggaggatcaatattctttggtgttcttgagagaacaaagcgataccttgcacaaaatcgtcctgataatgcaacctcaaagaaggattagtttctatggttttcttgtcactagttgcatggtattgttaaattgaatctagttactgttcagtattactgccatttgcagaaagtcgactatgctagaaaataagtatccatagagttataaagagatcagctgtcctaggaattaatgtacaaataacaaagagaagtagcatctctggtgataaaggtcctgttgtggccaagggaattttggatgatggaagagtttaatttattttttcaagtcttagtatgtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="32376" stop="31394"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32076" g_stop="31703" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="383" polyA_stop="394"/>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E341972" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32076" e_stop="31703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATCGGGCCAAGAGTGCTTTGGATAGGCATTGGAGGATCAATATTCTTTGGTGTTCTTGAGAGAACAAAGCGATACCTTGCACAAAATCGTCCTGATAATGCAACCTCAAAGAAGGATTAGTTTCTATGGTTTTCTTGTCACTAGTTGCATGGTATTGTTAAATTGAATCTAGTTACTGTTCAGTATTACTGCCATTTGCAGAAAGTCGACTATGCTAGAAAATAAGTATCCATAGAGTTATAAAGAGATCAGCTGTCCTAGGAATTAATGTACAAATAACAAAGAGAAGTAGCATCTCTGGTGATAAAGGTCCTGTTGTGGCCAAGGGAATTTTGGATGATGGAAGAGTTTAATTTATTTTTTCAAGTCTTA</genome_strand>
        <mrna_strand>GCATCGGGCCAAGAGTGCTTTGGATAGGCATTGGAGGATCAATATTCTTTGGTGTTCTTGAGAGAACAAAGCGATACCTTGCACAAAATCGTCCTGATAATGCAACCTCAAAGAAGGATTAGTTTCTATGGTTTTCTTGTCACTAGTTGCATGGTATTGTTAAATTGAATCTAGTTACTGTTCAGTATTACTGCCATTTGCAGAAAGTCGACTATGCTAGAAAATAAGTATCCATAGAGTTATAAAGAGATCAGCTGTCCTAGGAATTAATGTACAAATAACAAAGAGAAGTAGCATCTCTGGTGATAAAGGTCCTGTTGTGGCCAAGGGAATTTTGGATGATGGAAGAGTTTAATTTATTTTTTCAAGTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E689183" ref_strand="+" ref_description="SGN-E689183 [t3_tus_80_H12]">
      <seq>ggcttctgctatttttgttggtgtatatgaaccggcaaagcagaagctgttgaagatgtttcctgaaaatcttagtgctgtggcccatcttactgctggtgctttaggaggcattgcagcttcctttgtccgtgttccaactgaggtcattaagcagcgaatgcaaactaggcaatttgcttcggctcctgatgctgttcgcttaatagtctcaaaagaaggttttaaaggtctttatgcgggatatgggtcatttctacttcgagatttaccatttgatgccatccagttctgtatctatgagcagctgcggataggttataagctggctgcaaaaagggaattgaatgatccagagaatgcagttatcggtgcttttgctggtgctctaactggagctataactactcctcttgatgtcattaagacgagattaatgactcagggttctgccaatcaatacaagggcattgttgattgtgtgaagactattgttgcagaagaagggcctccagcacttctaaagggcatcgggccaagagtgctttggataggcattggaggatcaatattctttggtgttcttgagagaacaaagcgataccttgcacaaaatcgtcctgataatgcaacctcaaagaaggattagtttctatggttttcttgtcactagttgcatggtattgttaaattgaatctagttactgttcagtattactgccatttgcagaaagtcgactatgctagaaaataagtatccatagagttataaaagagatcagctgtcctaggaattaatgtaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="36114" stop="31501"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35814" g_stop="35724" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35723" i_stop="34854" i_length="870">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34853" g_stop="34800" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="145" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34799" i_stop="34659" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34658" g_stop="34563" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="241" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34562" i_stop="34434" i_length="129">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34433" g_stop="34344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="331" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34343" i_stop="33917" i_length="427">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33916" g_stop="33865" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="383" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33864" i_stop="32987" i_length="878">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32986" g_stop="32925" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="445" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32924" i_stop="32770" i_length="155">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="32769" g_stop="32689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="526" r_length="81" r_score="0.988"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="32688" i_stop="32078" i_length="611">
            <donor d_prob="0.730" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="32077" g_stop="31801" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="804" r_length="278" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E689183" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35814" e_stop="35724"/>
          <exon e_start="34853" e_stop="34800"/>
          <exon e_start="34658" e_stop="34563"/>
          <exon e_start="34433" e_stop="34344"/>
          <exon e_start="33916" e_stop="33865"/>
          <exon e_start="32986" e_stop="32925"/>
          <exon e_start="32769" e_stop="32689"/>
          <exon e_start="32077" e_stop="31801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTTGTGAGAATTTCTCCTCCCATTGTCATGACTGCATTTTTGATCTTGTTTTTTAGTTTTTTTAAATCAAGCTGGTCTTGTTTTCTAGCTTGTGATGTGACATACGACATACACCAATTCATTAATAGAACTTATGTGAATAAAAATCATATTTAGAACTTTCTAGTGGGTGTTTGATGGAATATACTGTTTTCATAGTCATTATTCCCCACGAAAAAAGAAAAAGGTACCACATGAAGCAGAATTTGAGGACTAAAAGGAATACAACTGTCAGTGTACTAGACGATATGATACATCATGAAACTCAGGTAATTAGCTAGTGGAAACGTATCTGCAATGAAATAAGCCAAGAAACATGACATAAATCTTGCAGTATGTCAAGCACACACTAAGAGGGTGTTTGGATTGGCTTAAAAGTTGGTCAAACCTACTTTTAAGTCAGTTTTTGACTTCTGGAAGTGTTTGGCTAATATGAAAATAATTTAAAATAAGTAAAAAATGACTTACAATAAGTTGAGAAGTGTTTGGTAAGGTAAAAAATGACATAAAATAACTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTCCCCCTACTTTTTATTTTTTTGACTTAAAAGTCATTTCAGTTTGACTTTTTATTTTTGACTTTAAAGTTACTTTTTTTAAGCCAATCCAAACGGGCTAAACACTGGTTACTGATAACATGAATTCGTATCACCTCATGAATTATAATTTATTGCTGTAAATTATACATGCATTTTACTCTATTCTTCAAGTATGTGACGTCTGAATTCTAAAGCATGCATATTACTCATTCAATTGTGATTTATGTTTCATAATAAGAACTGCCAAATTTAATGCAGACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAGGTGAATGATTTTTTTTTTTTTTTTGAGATTTTCAGTTTCCTGAATATCATGATTCTCCTTTTGTTATCATTCTTGATTTTGCCTGTTTAGGATATTCCCTTTGTTAATCTATTGATTGCACTTGGTTTCTTGACACTACAGGTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCGGTATGCTAGTTCTTTAATGTCACATATCTAGTTCATTACTGTTTTCAGGTATTCCTGGTTAGCCGGGTGCAACTTTCACACGATAGATATAACATTGGTTTATTTTATTGTAATATGGGGATTTTGTAGGGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCTGTAAGTATTCTTCTTTCCAAGATGTTGAGACCAACTTCTCAGAGTATTATATGAAAGTTACCCATTTCTCTGTTGAATAATTATGTGTGATAGAGCTTCATTCGCATGTAGTCTAAATTTTGATGTACAGCTAAAGAAAATAAGAAAAGGTATTGCATAAACTGGTATATTAATACTTGAGCAGAAATTCTCTGAGCTGGTTTCTTCTTGTCTTTCCTCCTTGCGTGCTTGACTTCTCACTTCAGTAGCATCAAAAGTTCACGGAATAGTGTTTAAACTAACAAAATGAGGAGCTTTAAATTTGCTTTTCCATGTCCATCATGGATGGGGATGATCAGATGCTTTACTGTTTGATTGAAAAAGGTATGGCACTAGTCTCTTAAATGGTTAGTTTGATATCAGAGCTGCCTTATGTACCTCTTACCAGGCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTGGTAAACCACCTTCATAGCCCTATTACATGTCCATCTTTTGGTAGGCCTTGATAGGGCATGCTATTTTTATTTTAATAATTCAGCTGCTGTCTAGAGGGTGTCACTTGCTCTTTCATCTAAGCTTGAAGTATCAAGAAATCTAGGCTCAAGTAGAGATAAGTTGTACATTGCACAATTAACAGGGTGTTTTAACTTTTTATTTGAATCAAACTAATTTCCCATTAATGACTTAAACGACATAATGACCTCTACATTTTGACTTCCTCCTTTGGATTAATAAATTGGAGTGGGAAATGATAAAGCATGGCTAACTTCAAGAACAAAACAAGCATTTGACATCTATTCTTGTTTGAATTTCTGTAGATTCAGAACCTATGGATTTTATGAAGTAGAAAGCTGAATTGCAGGGTTCTTTAATCATACTCTTGAAGAGTTGTAGACTGATCCATGAATAAGGAAATCCTTTGGTCTGGAATCTCCTCAAAAGAGCTGTCAGTTAAAATTGCCCTACTAGTGCTGGAACACATCAATGAAATTTATTCATTACTGATTTGTTTTTTTTTTGTTATGGGGGAATTTGGGACACAAATGGTACCTGTTAAAAATCATGCATCAAAGTGTTCTTCAAGTAAAAGAAAAGACTGTTGAATTTCCATTTCAGTGAATGAATATGCAATGTTGAGCGACGATTGACATGATTATATGACTAAAAGTAATTGCTGTGTGGGAAATGCAAATTACTGAATTTCTGTTTGTTTAGCCTGTCTAGATTTATAACTTTTCATGTTGCTGCAGTAAATATATGATTTTCCTGAGTCTGCAAGTATATTATGAACCCCTTCTCTAAAGCTATCAATGGCTACCGTTACTTCTTGCAGGTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAGGTACTTGCTTGCTTCACATGGTGCTCAAATTCTCGGGTTCTCCTAGTCTCTTCATCCAATGCATGCATGGCTATTACAAAATGACACTTCCATAAATGGTAAGACTACGTTTTCATTTAATTTAGGTAATGACTTCCAGTCTTGTTCCTCTGCAGGGTTCTGCCAATCAATACAAGAGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCTAAAGGTAAATGGATCCGACAATTCCTTTTAGACTGCAGTACTAGGACCCAAAACCTGAGTTCTTTTATCCTGGAGATTGCTTCTTTTCTTGGTTTGTCTATTTCTCTTTCATGAAAAATCAAATGGATGATAAATGAGCTTAGCATCCCCACCTCGCCTTTCACCATTTTGGTATCCTGGGATTACGGCGGGTACAAATATTGAAAGAGAGCCATGCCCCGAAACTTACAGTTACACTGAATTCTGGTCCTTTACTTCCTAATCACTAATTGTGCTGCATAATCAGGCCGGATTTTGATGGGACCCTAATATAGTCATAAGCTGATACCACACATTTTCCTCATCTTCCGTGCATATAAGTAAATATCATGTACTTTGTCTATCTTCTCCTGACATAGAGGCATCGTCTTAAATATTGCATCCAATAGAAGCTGCTAAGGACTAACAACAAGAAATATTTCCACGTTTCTCCCATGTCTACGGAGTTTCTTTCTTTTGTTTTTTCTGAGTTGCAATATATATATATGTAGGTGTACCATTTGAATCTTAAACTTATCAGTAAGTCTGATACATGCTTGTTTACCTCTGTTTGTTTGGAATTAAATTTCATTATAGGGCATCGGGCCAAGAGTGCTTTGGATAGGCATTGGAGGATCAATATTCTTTGGTGTTCTTGAGAGAACAAAGCGATACCTTGCACAAAATCGTCCTGATAATGCAACCTCAAAGAAGGATTAGTTTCTATGGTTTTCTTGTCACTAGTTGCATGGTATTGTTAAATTGAATCTAGTTACTGTTCAGTATTACTGCCATTTGCAGAAAGTCGACTATGCTAGAAAATAAGTATCCATAGAGTTAT-AAAGAGATCAGCTGTCCTAGGAATTAATGTACA</genome_strand>
        <mrna_strand>GGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAG.............................................................................................................................................GTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCG.................................................................................................................................GGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAG...........................................................................................................................................................GGTTCTGCCAATCAATACAAGGGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCTAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATCGGGCCAAGAGTGCTTTGGATAGGCATTGGAGGATCAATATTCTTTGGTGTTCTTGAGAGAACAAAGCGATACCTTGCACAAAATCGTCCTGATAATGCAACCTCAAAGAAGGATTAGTTTCTATGGTTTTCTTGTCACTAGTTGCATGGTATTGTTAAATTGAATCTAGTTACTGTTCAGTATTACTGCCATTTGCAGAAAGTCGACTATGCTAGAAAATAAGTATCCATAGAGTTATAAAAGAGATCAGCTGTCCTAGGAATTAATGTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E702115" ref_strand="+" ref_description="SGN-E702115 [FA17DD06]">
      <seq>gcagaaggtaacaaaaaggctcaaatattccaacttcaacttcccaagaagtggttcaaaatggggccttttgcattagctttggatacaaagaattcttttgcaacctcctcttctgctacagatgcatctggcagaaaaatggataaccttcagatggtaccaaaaaagttctttgcatcaatcaacaacggagaagagaaaccatttgattttctacggatactatttgcaggagggaccgccggtgttgttgttgaaacagctttatatcccattgatacaataaagacacggctgcaggtagctcgtggtggaggacaaatagccttgaaggggttgtattctgggcttcttggaaatcttgctggagtcctaccggcttctgctatttttgttggtgtatatgaaccggcaaagcagaagctgttgaagatgtttcctgaaaatcttagtgctgtggcccatcttactgctggtgctttaggaggcattgcagcttcctttgtccgtgttccaactgaggtcattaagcagcgaatgcaaactaggcaatttgcttcggctcctgatgctgttcgcttaatagtctcaaaagaaggttttaaaggtctttatgcgggatatgggtcatttctacttcgagatttaccatttgatgccatccagttctgtatctatgagcagctgcggataggttataagctggctgcaaaaagggaattgaatgatccagagaatgcagttatcggtgcttttgctggtgctctaactggagctataactactcctcttgatgtcattaagacgagattaatgactcagggttctgccaatcaatacaagggcattgttgattgtgtgaagactattgttgcagaagaagggcctccagcacttctaaagggcatcgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="39746" stop="32381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39446" g_stop="39394" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39393" i_stop="39323" i_length="71">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39322" g_stop="39252" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="124" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39251" i_stop="37787" i_length="1465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37786" g_stop="37679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="232" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37678" i_stop="36562" i_length="1117">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36561" g_stop="36491" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="303" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36490" i_stop="36106" i_length="385">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36105" g_stop="36029" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="380" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36028" i_stop="35815" i_length="214">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35814" g_stop="35724" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="471" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35723" i_stop="34854" i_length="870">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34853" g_stop="34800" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="525" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34799" i_stop="34659" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34658" g_stop="34563" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="526" r_stop="621" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34562" i_stop="34434" i_length="129">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34433" g_stop="34344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="711" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34343" i_stop="33917" i_length="427">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="33916" g_stop="33865" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="763" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="33864" i_stop="32987" i_length="878">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="32986" g_stop="32925" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="764" r_stop="825" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="32924" i_stop="32770" i_length="155">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="32769" g_stop="32689" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="826" r_stop="906" r_length="81" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E702115" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>906</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702115" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39446" e_stop="39394"/>
          <exon e_start="39322" e_stop="39252"/>
          <exon e_start="37786" e_stop="37679"/>
          <exon e_start="36561" e_stop="36491"/>
          <exon e_start="36105" e_stop="36029"/>
          <exon e_start="35814" e_stop="35724"/>
          <exon e_start="34853" e_stop="34800"/>
          <exon e_start="34658" e_stop="34563"/>
          <exon e_start="34433" e_stop="34344"/>
          <exon e_start="33916" e_stop="33865"/>
          <exon e_start="32986" e_stop="32925"/>
          <exon e_start="32769" e_stop="32689"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAAGGTAACAAAAAGGCTCAAATATTCCAACTTCAACTTCCCAAGAAGTGGTAATTTTTCTTTGAAATTGTCATTTTTAGTTGTAAATGATATCATAAAATTTCTGTTGTATTGGGTGAAGGTTCAAAATGGGGCCTTTTGCATTAGCTTTGGATACAAAGAATTCTTTTGCAACCTCCTCTTCTGCTACAGGTATCTTCACTTTCCATATCTTTTTACTTTTTCTAATTTTTCTTTGGGTTGTTGTATATGGAAGTAATAATTTCAGTGTACTATTGTTTGTAGTTTGGACTAAGATTTTTGGGCATAATTTGTCACATTTTACAGTGTAGAAATGCTAATGTAGGTTTTTTTTTTTGGTGGGTGGGTGGGTGGGAGGGATAACAACAGCTTACCCTGTGGAACTTACTACTACTTTGTGGAGGTGGAGGTAGAGAGGTTGTTTCTGAAAGTCCGTGTGTGGGAGGGATAATGAATTTAAATTAATTGCAGGGTTAATGTATGATATATTTGGTTTAAGTTTTGATTGAAACTAAAGGTAGGTGCAACTATAGTCATATCTGGAAATTGCAAGAGTAACTGATATTAGTGATTCTGCTTGTGCGTGAATATATGGGAGTCTAGGGTTCCACTGGTTCCCTTTGTGGCTAAGAATGAGTAAACGTCCAGTATAATTCCACAAGTGGGGTGTGGGGAGTGTAGAGTGTACGCAGATCTTACTCTTACCTTCTATGGGTAGGGCGGTTGTTTCTGATAGATCCTCGGCTCATGAAGAGGTGAAAAGGAAGCAGTAACAACAACAAGATAATAAGATAAACGAAATGAAAGAAATAAACCTGTAGTACTAGATATTTAATAATATTAGCAAGCATTTTTTGGGTAGTATGGACAGAAAGGAATCAGAGATGTTTTGATGTTATATCAGATCCTAATCATTTCCTTGTGTGGCTAAGAATGATGAATAAGGTAATTATATTTTTAAGGGATACTTGAACATTGGGATCTCAAGATCCAAATTACGTCACTAAACCAACTCAATTACTGGATTCAGTATTTATTGGAGTCAGTGTTTTTATACTAAGATTACTTGATATTTTAATTTGACAGTGTTGTCGTAATGTTTTTACATTAGGTCCACGTACTTTGAGTTACATATCTGATTGCTAATATGTACGGCTAGTGCTACTTGTTGGTTTGAACAGACAAAACTGAAAAGTGATAGTAGTGAAATATTTCTATTAGTTACATTAAGGAAAACTTTTTCCTTCAGAAAATACAATTAGTCAAGCATAACTGTTTAGTGTAATGATCGGTCTAGCTTAATTGCTCAATAGATTGAATGGTGCTCCTTTTAGAAACACAAAAGTTTCTTTATATCAATTCTGAATACTCACAACTTTAATTGTTTAATGAGATTAACTAACTACTCTTAAGCTGATGTCTTGAATACCAATTTGCACACAGCAAGGATGAAATAGAGAGGTAGCATGATGGTTTCATTTGTCACCATTTCCATTATTAAAATGTTCTCGTCTCTTTGGCAAACTATACTAAGAATAAGCTCAAGGTTTCTCGATGAAGGATTAAAGAATAACCACGCATTACCCATATCTTGTAGTTCCCGGTTCGTTCTTGAGGATGTGGTTTGATTTTGCAGATGCATCTGGCAGAAAAATGGATAACCTTCAGATGGTACCAAAAAAGTTCTTTGCATCAATCAACAACGGAGAAGAGAAACCATTTGATTTTCTACGGATACTATTTGGTATGTCTGCTGAAACAATAGTAATTAAATGATGATATTGGAACATTCTTGTCAAGTTGTCATATTTCCTTAGGTTGTTGCTCTCTTTATTTTTCTTTTATTTAACGGATGCTCCCAGCTTGCCCACAGCCAACCTCCACCTCTAACAAAACACGTCCTGAAAGACAGATAAGAAGATCAGTTCTTTCTCTTTACACTCTACAGTTGACAGATAGGAACTCTCTTACGTCAATCTGGTTTCCCAACTTCCCCTTTCATTTTTTATTCTGATTCATTTACAAAAGTACTTCAACATTTGTAGGTAGGAATTGAACAGCCACACCACACAGAAATTTCAAAAAGTCATTTTGACTACTTTTTGTTACAGAGGTGGTATACCGGGGATTCTTCCATCGTTAATAAGATTATTTATTATATCTTAGAAAAAGTTATTGAGTCACTAGTAAAAAATGTTCTCGAGTGTCATAGAGCAATGTAGCCCAGACGGTCAGGGGCTTAAATTTTATTTACCAATTTCTTAGCTGAGATTCCAAGTGATAAACCTGTCAAATGGTAGAATGGTTTTCTCTGGAGCAACTTCGTGCGTAAAAGCTTATGATGGCATCATAATTTCTTTTTGACAGGGTTGTTTAGTAATAAAGGCTCAGTACTAAGCTAATAGTGGGACAGAGTACATCATACAAAACTGGATGGGCATATGATGGCATCATGCTCCCAGGACTTAGTTCAGGTGGCAAAGGTTGAGGGAGTTGACTTAGATCACAGGTTCAAGCCCTTGCCATGCAAACTGAGTATGGTATTTTAGTGGAGAAGGGTAGAGGGGCGGGCCTATTATCCTCTAGTTTGAAGTGTGTGGTTGCTCCTAAGGATTAGATTTTCTTGGTCATAGAAAAGAATAGAAGAAGGTATATGATGCATCATCTTTGTCTAAAAAAAGAAGGTATATGATGCATCATAATTATTTTATGCTAGTTGGGCTACAGAAATTAATAACATAGAGTTCCTCTACTGCTAAAAAGAAAATATTTCAGTAATCAAAACTATCATAGGGCAAGAATCTTTTGTTTTGAGGTTTGGCTTTTCTAATTGTGGTTAATTTGTGCAGAGGGTGTGATAGCAGGAGGGACCGCCGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACAATAAAGACACGGCTGCAGGCAAGTTAATTGTTTATTACCGAAGTCTTTATCAATTATATGAGTGATATGACAATGCTTGAGTTGGTTTCTTTAGTAGCTTCACAACAGGCTTTTTATGGATTCTCGAGGCTATTAGCTCCTTATGTTGACAGGCTGGAACAAAGAGATAAGGAAATGGTAGATAGATAATTTAGATGGAGTAGAACTGTATTCATAACGACATTTTATTGCCTAGACCAGTTGACATTCCATTTGCATACCGCTGAGTAGCTACATTCAGGTCCACTGCCATTAAAATAGTTGAATGCAGAGCGCCAGGCCTCTTTCATTTTAATTAGATTATTTTCAGTCTCTTGTTTCCCCCTGAGTATTCGAATCATCAGTTCATTGCTTCCTGGTGCAGGTAGCTCGTGGTGGAGGACAAATAGCCTTGAAGGGGTTGTATTCTGGGCTTCTTGGAAATCTTGCTGGAGTCCTACCGTAAGTTATAGTAACAAAGTACTATTTAATAGCTTAGAACTATGAATATCAGTCTCCATGATACCTGCACTTTTGTCAACCGATGCAATTGAAATTCTCTTTTGCAACCATAACTTGCTTTCATTTACTGAGGTGAACAGTCGTATTTTCTTGTAAGGTTTCTTACCTAAGGGTATTTAATAGCAGTTTCTATTGATCCTGTTCTCTCGTGCAGGGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTTGTGAGAATTTCTCCTCCCATTGTCATGACTGCATTTTTGATCTTGTTTTTTAGTTTTTTTAAATCAAGCTGGTCTTGTTTTCTAGCTTGTGATGTGACATACGACATACACCAATTCATTAATAGAACTTATGTGAATAAAAATCATATTTAGAACTTTCTAGTGGGTGTTTGATGGAATATACTGTTTTCATAGTCATTATTCCCCACGAAAAAAGAAAAAGGTACCACATGAAGCAGAATTTGAGGACTAAAAGGAATACAACTGTCAGTGTACTAGACGATATGATACATCATGAAACTCAGGTAATTAGCTAGTGGAAACGTATCTGCAATGAAATAAGCCAAGAAACATGACATAAATCTTGCAGTATGTCAAGCACACACTAAGAGGGTGTTTGGATTGGCTTAAAAGTTGGTCAAACCTACTTTTAAGTCAGTTTTTGACTTCTGGAAGTGTTTGGCTAATATGAAAATAATTTAAAATAAGTAAAAAATGACTTACAATAAGTTGAGAAGTGTTTGGTAAGGTAAAAAATGACATAAAATAACTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTCCCCCTACTTTTTATTTTTTTGACTTAAAAGTCATTTCAGTTTGACTTTTTATTTTTGACTTTAAAGTTACTTTTTTTAAGCCAATCCAAACGGGCTAAACACTGGTTACTGATAACATGAATTCGTATCACCTCATGAATTATAATTTATTGCTGTAAATTATACATGCATTTTACTCTATTCTTCAAGTATGTGACGTCTGAATTCTAAAGCATGCATATTACTCATTCAATTGTGATTTATGTTTCATAATAAGAACTGCCAAATTTAATGCAGACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAGGTGAATGATTTTTTTTTTTTTTTTGAGATTTTCAGTTTCCTGAATATCATGATTCTCCTTTTGTTATCATTCTTGATTTTGCCTGTTTAGGATATTCCCTTTGTTAATCTATTGATTGCACTTGGTTTCTTGACACTACAGGTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCGGTATGCTAGTTCTTTAATGTCACATATCTAGTTCATTACTGTTTTCAGGTATTCCTGGTTAGCCGGGTGCAACTTTCACACGATAGATATAACATTGGTTTATTTTATTGTAATATGGGGATTTTGTAGGGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCTGTAAGTATTCTTCTTTCCAAGATGTTGAGACCAACTTCTCAGAGTATTATATGAAAGTTACCCATTTCTCTGTTGAATAATTATGTGTGATAGAGCTTCATTCGCATGTAGTCTAAATTTTGATGTACAGCTAAAGAAAATAAGAAAAGGTATTGCATAAACTGGTATATTAATACTTGAGCAGAAATTCTCTGAGCTGGTTTCTTCTTGTCTTTCCTCCTTGCGTGCTTGACTTCTCACTTCAGTAGCATCAAAAGTTCACGGAATAGTGTTTAAACTAACAAAATGAGGAGCTTTAAATTTGCTTTTCCATGTCCATCATGGATGGGGATGATCAGATGCTTTACTGTTTGATTGAAAAAGGTATGGCACTAGTCTCTTAAATGGTTAGTTTGATATCAGAGCTGCCTTATGTACCTCTTACCAGGCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTGGTAAACCACCTTCATAGCCCTATTACATGTCCATCTTTTGGTAGGCCTTGATAGGGCATGCTATTTTTATTTTAATAATTCAGCTGCTGTCTAGAGGGTGTCACTTGCTCTTTCATCTAAGCTTGAAGTATCAAGAAATCTAGGCTCAAGTAGAGATAAGTTGTACATTGCACAATTAACAGGGTGTTTTAACTTTTTATTTGAATCAAACTAATTTCCCATTAATGACTTAAACGACATAATGACCTCTACATTTTGACTTCCTCCTTTGGATTAATAAATTGGAGTGGGAAATGATAAAGCATGGCTAACTTCAAGAACAAAACAAGCATTTGACATCTATTCTTGTTTGAATTTCTGTAGATTCAGAACCTATGGATTTTATGAAGTAGAAAGCTGAATTGCAGGGTTCTTTAATCATACTCTTGAAGAGTTGTAGACTGATCCATGAATAAGGAAATCCTTTGGTCTGGAATCTCCTCAAAAGAGCTGTCAGTTAAAATTGCCCTACTAGTGCTGGAACACATCAATGAAATTTATTCATTACTGATTTGTTTTTTTTTTGTTATGGGGGAATTTGGGACACAAATGGTACCTGTTAAAAATCATGCATCAAAGTGTTCTTCAAGTAAAAGAAAAGACTGTTGAATTTCCATTTCAGTGAATGAATATGCAATGTTGAGCGACGATTGACATGATTATATGACTAAAAGTAATTGCTGTGTGGGAAATGCAAATTACTGAATTTCTGTTTGTTTAGCCTGTCTAGATTTATAACTTTTCATGTTGCTGCAGTAAATATATGATTTTCCTGAGTCTGCAAGTATATTATGAACCCCTTCTCTAAAGCTATCAATGGCTACCGTTACTTCTTGCAGGTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAGGTACTTGCTTGCTTCACATGGTGCTCAAATTCTCGGGTTCTCCTAGTCTCTTCATCCAATGCATGCATGGCTATTACAAAATGACACTTCCATAAATGGTAAGACTACGTTTTCATTTAATTTAGGTAATGACTTCCAGTCTTGTTCCTCTGCAGGGTTCTGCCAATCAATACAAGAGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCTAAAG</genome_strand>
        <mrna_strand>GCAGAAGGTAACAAAAAGGCTCAAATATTCCAACTTCAACTTCCCAAGAAGTG.......................................................................GTTCAAAATGGGGCCTTTTGCATTAGCTTTGGATACAAAGAATTCTTTTGCAACCTCCTCTTCTGCTACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCTGGCAGAAAAATGGATAACCTTCAGATGGTACCAAAAAAGTTCTTTGCATCAATCAACAACGGAGAAGAGAAACCATTTGATTTTCTACGGATACTATTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGGACCGCCGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACAATAAAGACACGGCTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTCGTGGTGGAGGACAAATAGCCTTGAAGGGGTTGTATTCTGGGCTTCTTGGAAATCTTGCTGGAGTCCTACC......................................................................................................................................................................................................................GGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAG.............................................................................................................................................GTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCG.................................................................................................................................GGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAG...........................................................................................................................................................GGTTCTGCCAATCAATACAAGGGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E744424" ref_strand="+" ref_description="SGN-E744424 [GI|399647]">
      <seq>gttgatgccatccagtcgttactatgagcagctgcggataggttataagctggctgcaaaaagggaattgaatgatccagagaatgcagttatcggtgcttttgctggtgctctaactggagctataactactcctcttgatgtcattaagacgagattaatgactcagggttctgccaatcaatacaagagcattgttgattgtgtgaagactattgttgcagaagaagggcctccagcacttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="34699" stop="32393"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34400" g_stop="34344" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34343" i_stop="33917" i_length="427">
            <donor d_prob="0.958" d_score="0.92"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33916" g_stop="33865" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="107" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33864" i_stop="32987" i_length="878">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="32986" g_stop="32925" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="169" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32924" i_stop="32770" i_length="155">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32769" g_stop="32693" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="246" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E744424" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>248</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34400" e_stop="34344"/>
          <exon e_start="33916" e_stop="33865"/>
          <exon e_start="32986" e_stop="32925"/>
          <exon e_start="32769" e_stop="32693"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCTGTAAGTATTCTTCTTTCCAAGATGTTGAGACCAACTTCTCAGAGTATTATATGAAAGTTACCCATTTCTCTGTTGAATAATTATGTGTGATAGAGCTTCATTCGCATGTAGTCTAAATTTTGATGTACAGCTAAAGAAAATAAGAAAAGGTATTGCATAAACTGGTATATTAATACTTGAGCAGAAATTCTCTGAGCTGGTTTCTTCTTGTCTTTCCTCCTTGCGTGCTTGACTTCTCACTTCAGTAGCATCAAAAGTTCACGGAATAGTGTTTAAACTAACAAAATGAGGAGCTTTAAATTTGCTTTTCCATGTCCATCATGGATGGGGATGATCAGATGCTTTACTGTTTGATTGAAAAAGGTATGGCACTAGTCTCTTAAATGGTTAGTTTGATATCAGAGCTGCCTTATGTACCTCTTACCAGGCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTGGTAAACCACCTTCATAGCCCTATTACATGTCCATCTTTTGGTAGGCCTTGATAGGGCATGCTATTTTTATTTTAATAATTCAGCTGCTGTCTAGAGGGTGTCACTTGCTCTTTCATCTAAGCTTGAAGTATCAAGAAATCTAGGCTCAAGTAGAGATAAGTTGTACATTGCACAATTAACAGGGTGTTTTAACTTTTTATTTGAATCAAACTAATTTCCCATTAATGACTTAAACGACATAATGACCTCTACATTTTGACTTCCTCCTTTGGATTAATAAATTGGAGTGGGAAATGATAAAGCATGGCTAACTTCAAGAACAAAACAAGCATTTGACATCTATTCTTGTTTGAATTTCTGTAGATTCAGAACCTATGGATTTTATGAAGTAGAAAGCTGAATTGCAGGGTTCTTTAATCATACTCTTGAAGAGTTGTAGACTGATCCATGAATAAGGAAATCCTTTGGTCTGGAATCTCCTCAAAAGAGCTGTCAGTTAAAATTGCCCTACTAGTGCTGGAACACATCAATGAAATTTATTCATTACTGATTTGTTTTTTTTTTGTTATGGGGGAATTTGGGACACAAATGGTACCTGTTAAAAATCATGCATCAAAGTGTTCTTCAAGTAAAAGAAAAGACTGTTGAATTTCCATTTCAGTGAATGAATATGCAATGTTGAGCGACGATTGACATGATTATATGACTAAAAGTAATTGCTGTGTGGGAAATGCAAATTACTGAATTTCTGTTTGTTTAGCCTGTCTAGATTTATAACTTTTCATGTTGCTGCAGTAAATATATGATTTTCCTGAGTCTGCAAGTATATTATGAACCCCTTCTCTAAAGCTATCAATGGCTACCGTTACTTCTTGCAGGTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAGGTACTTGCTTGCTTCACATGGTGCTCAAATTCTCGGGTTCTCCTAGTCTCTTCATCCAATGCATGCATGGCTATTACAAAATGACACTTCCATAAATGGTAAGACTACGTTTTCATTTAATTTAGGTAATGACTTCCAGTCTTGTTCCTCTGCAGGGTTCTGCCAATCAATACAAGAGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCT</genome_strand>
        <mrna_strand>GTTGATGCCATCCAG-TC-GTTACTATGAGCAGCTGCGGATAGGTTATAAGCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAG...........................................................................................................................................................GGTTCTGCCAATCAATACAAGAGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E738197" ref_strand="+" ref_description="SGN-E738197 [LC12DA02]">
      <seq>caatgctcaaatattccaacttcaacttcccaagaagtggttcaaaatggggccttttgcattagctttggatacaaagaattcttttgcaacctcctcttctgctacagatgcatctggcagaaaaatggataaccttcagatggtaccaaaaaagttctttgcatcaatcaacaacggagaagagaaaccatttgattttctacggatactatttgagggtgtgatagcaggagggaccgccggtgttgttgttgaaacagctttatatcccattgatacaataaagacacggctgcaggtagctcgtggtggaggacaaatagccttgaaggggttgtattctgggcttcttggaaatcttgctggagtcctaccggcttctgctatttttgttggtgtatatgaaccggcaaagcagaagctgttgaagatgtttcctgaaaatcttagtgctgtggcccatcttactgctggtgctttaggaggcattgcagcttcctttgtccgtgttccaactgaggtcattaagcagcgaatgcaaactaggcaatttgcttcggctcctgatgctgttcgcttaatagtctcaaaagaaggttttaaaggtctttatgcgggatatgggtcatttctacttcgagatttaccatttgatgccatccagttctgtatctatgagcagctgcggataggttataagctggctgcaaaaagggaattgaatgatccagagaatgcagttatcggtgcttttgctggtgctctaactggagctataactactcctcttgatgtcattaagacgagattaatgactcagggttctgccaatcaatacaaaggcattgttgattgtgtgaagacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="39731" stop="32424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39432" g_stop="39394" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39393" i_stop="39323" i_length="71">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39322" g_stop="39252" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="110" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39251" i_stop="37787" i_length="1465">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37786" g_stop="37679" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="218" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37678" i_stop="36574" i_length="1105">
            <donor d_prob="0.961" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36573" g_stop="36491" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="301" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36490" i_stop="36106" i_length="385">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36105" g_stop="36029" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="378" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="36028" i_stop="35815" i_length="214">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35814" g_stop="35724" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="469" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="35723" i_stop="34854" i_length="870">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="34853" g_stop="34800" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="523" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="34799" i_stop="34659" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="34658" g_stop="34563" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="619" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="34562" i_stop="34434" i_length="129">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="34433" g_stop="34344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="709" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="34343" i_stop="33917" i_length="427">
            <donor d_prob="0.958" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="33916" g_stop="33865" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="710" r_stop="761" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="33864" i_stop="32987" i_length="878">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="32986" g_stop="32925" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="823" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="32924" i_stop="32770" i_length="155">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="32769" g_stop="32724" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="824" r_stop="869" r_length="46" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E738197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>869</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39432" e_stop="39394"/>
          <exon e_start="39322" e_stop="39252"/>
          <exon e_start="37786" e_stop="37679"/>
          <exon e_start="36573" e_stop="36491"/>
          <exon e_start="36105" e_stop="36029"/>
          <exon e_start="35814" e_stop="35724"/>
          <exon e_start="34853" e_stop="34800"/>
          <exon e_start="34658" e_stop="34563"/>
          <exon e_start="34433" e_stop="34344"/>
          <exon e_start="33916" e_stop="33865"/>
          <exon e_start="32986" e_stop="32925"/>
          <exon e_start="32769" e_stop="32724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTCAAATATTCCAACTTCAACTTCCCAAGAAGTGGTAATTTTTCTTTGAAATTGTCATTTTTAGTTGTAAATGATATCATAAAATTTCTGTTGTATTGGGTGAAGGTTCAAAATGGGGCCTTTTGCATTAGCTTTGGATACAAAGAATTCTTTTGCAACCTCCTCTTCTGCTACAGGTATCTTCACTTTCCATATCTTTTTACTTTTTCTAATTTTTCTTTGGGTTGTTGTATATGGAAGTAATAATTTCAGTGTACTATTGTTTGTAGTTTGGACTAAGATTTTTGGGCATAATTTGTCACATTTTACAGTGTAGAAATGCTAATGTAGGTTTTTTTTTTTGGTGGGTGGGTGGGTGGGAGGGATAACAACAGCTTACCCTGTGGAACTTACTACTACTTTGTGGAGGTGGAGGTAGAGAGGTTGTTTCTGAAAGTCCGTGTGTGGGAGGGATAATGAATTTAAATTAATTGCAGGGTTAATGTATGATATATTTGGTTTAAGTTTTGATTGAAACTAAAGGTAGGTGCAACTATAGTCATATCTGGAAATTGCAAGAGTAACTGATATTAGTGATTCTGCTTGTGCGTGAATATATGGGAGTCTAGGGTTCCACTGGTTCCCTTTGTGGCTAAGAATGAGTAAACGTCCAGTATAATTCCACAAGTGGGGTGTGGGGAGTGTAGAGTGTACGCAGATCTTACTCTTACCTTCTATGGGTAGGGCGGTTGTTTCTGATAGATCCTCGGCTCATGAAGAGGTGAAAAGGAAGCAGTAACAACAACAAGATAATAAGATAAACGAAATGAAAGAAATAAACCTGTAGTACTAGATATTTAATAATATTAGCAAGCATTTTTTGGGTAGTATGGACAGAAAGGAATCAGAGATGTTTTGATGTTATATCAGATCCTAATCATTTCCTTGTGTGGCTAAGAATGATGAATAAGGTAATTATATTTTTAAGGGATACTTGAACATTGGGATCTCAAGATCCAAATTACGTCACTAAACCAACTCAATTACTGGATTCAGTATTTATTGGAGTCAGTGTTTTTATACTAAGATTACTTGATATTTTAATTTGACAGTGTTGTCGTAATGTTTTTACATTAGGTCCACGTACTTTGAGTTACATATCTGATTGCTAATATGTACGGCTAGTGCTACTTGTTGGTTTGAACAGACAAAACTGAAAAGTGATAGTAGTGAAATATTTCTATTAGTTACATTAAGGAAAACTTTTTCCTTCAGAAAATACAATTAGTCAAGCATAACTGTTTAGTGTAATGATCGGTCTAGCTTAATTGCTCAATAGATTGAATGGTGCTCCTTTTAGAAACACAAAAGTTTCTTTATATCAATTCTGAATACTCACAACTTTAATTGTTTAATGAGATTAACTAACTACTCTTAAGCTGATGTCTTGAATACCAATTTGCACACAGCAAGGATGAAATAGAGAGGTAGCATGATGGTTTCATTTGTCACCATTTCCATTATTAAAATGTTCTCGTCTCTTTGGCAAACTATACTAAGAATAAGCTCAAGGTTTCTCGATGAAGGATTAAAGAATAACCACGCATTACCCATATCTTGTAGTTCCCGGTTCGTTCTTGAGGATGTGGTTTGATTTTGCAGATGCATCTGGCAGAAAAATGGATAACCTTCAGATGGTACCAAAAAAGTTCTTTGCATCAATCAACAACGGAGAAGAGAAACCATTTGATTTTCTACGGATACTATTTGGTATGTCTGCTGAAACAATAGTAATTAAATGATGATATTGGAACATTCTTGTCAAGTTGTCATATTTCCTTAGGTTGTTGCTCTCTTTATTTTTCTTTTATTTAACGGATGCTCCCAGCTTGCCCACAGCCAACCTCCACCTCTAACAAAACACGTCCTGAAAGACAGATAAGAAGATCAGTTCTTTCTCTTTACACTCTACAGTTGACAGATAGGAACTCTCTTACGTCAATCTGGTTTCCCAACTTCCCCTTTCATTTTTTATTCTGATTCATTTACAAAAGTACTTCAACATTTGTAGGTAGGAATTGAACAGCCACACCACACAGAAATTTCAAAAAGTCATTTTGACTACTTTTTGTTACAGAGGTGGTATACCGGGGATTCTTCCATCGTTAATAAGATTATTTATTATATCTTAGAAAAAGTTATTGAGTCACTAGTAAAAAATGTTCTCGAGTGTCATAGAGCAATGTAGCCCAGACGGTCAGGGGCTTAAATTTTATTTACCAATTTCTTAGCTGAGATTCCAAGTGATAAACCTGTCAAATGGTAGAATGGTTTTCTCTGGAGCAACTTCGTGCGTAAAAGCTTATGATGGCATCATAATTTCTTTTTGACAGGGTTGTTTAGTAATAAAGGCTCAGTACTAAGCTAATAGTGGGACAGAGTACATCATACAAAACTGGATGGGCATATGATGGCATCATGCTCCCAGGACTTAGTTCAGGTGGCAAAGGTTGAGGGAGTTGACTTAGATCACAGGTTCAAGCCCTTGCCATGCAAACTGAGTATGGTATTTTAGTGGAGAAGGGTAGAGGGGCGGGCCTATTATCCTCTAGTTTGAAGTGTGTGGTTGCTCCTAAGGATTAGATTTTCTTGGTCATAGAAAAGAATAGAAGAAGGTATATGATGCATCATCTTTGTCTAAAAAAAGAAGGTATATGATGCATCATAATTATTTTATGCTAGTTGGGCTACAGAAATTAATAACATAGAGTTCCTCTACTGCTAAAAAGAAAATATTTCAGTAATCAAAACTATCATAGGGCAAGAATCTTTTGTTTTGAGGTTTGGCTTTTCTAATTGTGGTTAATTTGTGCAGAGGGTGTGATAGCAGGAGGGACCGCCGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACAATAAAGACACGGCTGCAGGCAAGTTAATTGTTTATTACCGAAGTCTTTATCAATTATATGAGTGATATGACAATGCTTGAGTTGGTTTCTTTAGTAGCTTCACAACAGGCTTTTTATGGATTCTCGAGGCTATTAGCTCCTTATGTTGACAGGCTGGAACAAAGAGATAAGGAAATGGTAGATAGATAATTTAGATGGAGTAGAACTGTATTCATAACGACATTTTATTGCCTAGACCAGTTGACATTCCATTTGCATACCGCTGAGTAGCTACATTCAGGTCCACTGCCATTAAAATAGTTGAATGCAGAGCGCCAGGCCTCTTTCATTTTAATTAGATTATTTTCAGTCTCTTGTTTCCCCCTGAGTATTCGAATCATCAGTTCATTGCTTCCTGGTGCAGGTAGCTCGTGGTGGAGGACAAATAGCCTTGAAGGGGTTGTATTCTGGGCTTCTTGGAAATCTTGCTGGAGTCCTACCGTAAGTTATAGTAACAAAGTACTATTTAATAGCTTAGAACTATGAATATCAGTCTCCATGATACCTGCACTTTTGTCAACCGATGCAATTGAAATTCTCTTTTGCAACCATAACTTGCTTTCATTTACTGAGGTGAACAGTCGTATTTTCTTGTAAGGTTTCTTACCTAAGGGTATTTAATAGCAGTTTCTATTGATCCTGTTCTCTCGTGCAGGGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTTGTGAGAATTTCTCCTCCCATTGTCATGACTGCATTTTTGATCTTGTTTTTTAGTTTTTTTAAATCAAGCTGGTCTTGTTTTCTAGCTTGTGATGTGACATACGACATACACCAATTCATTAATAGAACTTATGTGAATAAAAATCATATTTAGAACTTTCTAGTGGGTGTTTGATGGAATATACTGTTTTCATAGTCATTATTCCCCACGAAAAAAGAAAAAGGTACCACATGAAGCAGAATTTGAGGACTAAAAGGAATACAACTGTCAGTGTACTAGACGATATGATACATCATGAAACTCAGGTAATTAGCTAGTGGAAACGTATCTGCAATGAAATAAGCCAAGAAACATGACATAAATCTTGCAGTATGTCAAGCACACACTAAGAGGGTGTTTGGATTGGCTTAAAAGTTGGTCAAACCTACTTTTAAGTCAGTTTTTGACTTCTGGAAGTGTTTGGCTAATATGAAAATAATTTAAAATAAGTAAAAAATGACTTACAATAAGTTGAGAAGTGTTTGGTAAGGTAAAAAATGACATAAAATAACTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTCCCCCTACTTTTTATTTTTTTGACTTAAAAGTCATTTCAGTTTGACTTTTTATTTTTGACTTTAAAGTTACTTTTTTTAAGCCAATCCAAACGGGCTAAACACTGGTTACTGATAACATGAATTCGTATCACCTCATGAATTATAATTTATTGCTGTAAATTATACATGCATTTTACTCTATTCTTCAAGTATGTGACGTCTGAATTCTAAAGCATGCATATTACTCATTCAATTGTGATTTATGTTTCATAATAAGAACTGCCAAATTTAATGCAGACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAGGTGAATGATTTTTTTTTTTTTTTTGAGATTTTCAGTTTCCTGAATATCATGATTCTCCTTTTGTTATCATTCTTGATTTTGCCTGTTTAGGATATTCCCTTTGTTAATCTATTGATTGCACTTGGTTTCTTGACACTACAGGTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCGGTATGCTAGTTCTTTAATGTCACATATCTAGTTCATTACTGTTTTCAGGTATTCCTGGTTAGCCGGGTGCAACTTTCACACGATAGATATAACATTGGTTTATTTTATTGTAATATGGGGATTTTGTAGGGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCTGTAAGTATTCTTCTTTCCAAGATGTTGAGACCAACTTCTCAGAGTATTATATGAAAGTTACCCATTTCTCTGTTGAATAATTATGTGTGATAGAGCTTCATTCGCATGTAGTCTAAATTTTGATGTACAGCTAAAGAAAATAAGAAAAGGTATTGCATAAACTGGTATATTAATACTTGAGCAGAAATTCTCTGAGCTGGTTTCTTCTTGTCTTTCCTCCTTGCGTGCTTGACTTCTCACTTCAGTAGCATCAAAAGTTCACGGAATAGTGTTTAAACTAACAAAATGAGGAGCTTTAAATTTGCTTTTCCATGTCCATCATGGATGGGGATGATCAGATGCTTTACTGTTTGATTGAAAAAGGTATGGCACTAGTCTCTTAAATGGTTAGTTTGATATCAGAGCTGCCTTATGTACCTCTTACCAGGCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTGGTAAACCACCTTCATAGCCCTATTACATGTCCATCTTTTGGTAGGCCTTGATAGGGCATGCTATTTTTATTTTAATAATTCAGCTGCTGTCTAGAGGGTGTCACTTGCTCTTTCATCTAAGCTTGAAGTATCAAGAAATCTAGGCTCAAGTAGAGATAAGTTGTACATTGCACAATTAACAGGGTGTTTTAACTTTTTATTTGAATCAAACTAATTTCCCATTAATGACTTAAACGACATAATGACCTCTACATTTTGACTTCCTCCTTTGGATTAATAAATTGGAGTGGGAAATGATAAAGCATGGCTAACTTCAAGAACAAAACAAGCATTTGACATCTATTCTTGTTTGAATTTCTGTAGATTCAGAACCTATGGATTTTATGAAGTAGAAAGCTGAATTGCAGGGTTCTTTAATCATACTCTTGAAGAGTTGTAGACTGATCCATGAATAAGGAAATCCTTTGGTCTGGAATCTCCTCAAAAGAGCTGTCAGTTAAAATTGCCCTACTAGTGCTGGAACACATCAATGAAATTTATTCATTACTGATTTGTTTTTTTTTTGTTATGGGGGAATTTGGGACACAAATGGTACCTGTTAAAAATCATGCATCAAAGTGTTCTTCAAGTAAAAGAAAAGACTGTTGAATTTCCATTTCAGTGAATGAATATGCAATGTTGAGCGACGATTGACATGATTATATGACTAAAAGTAATTGCTGTGTGGGAAATGCAAATTACTGAATTTCTGTTTGTTTAGCCTGTCTAGATTTATAACTTTTCATGTTGCTGCAGTAAATATATGATTTTCCTGAGTCTGCAAGTATATTATGAACCCCTTCTCTAAAGCTATCAATGGCTACCGTTACTTCTTGCAGGTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAGGTACTTGCTTGCTTCACATGGTGCTCAAATTCTCGGGTTCTCCTAGTCTCTTCATCCAATGCATGCATGGCTATTACAAAATGACACTTCCATAAATGGTAAGACTACGTTTTCATTTAATTTAGGTAATGACTTCCAGTCTTGTTCCTCTGCAGGGTTCTGCCAATCAATACAAGAGCATTGTTGATTGTGTGAAGACTA</genome_strand>
        <mrna_strand>CAATGCTCAAATATTCCAACTTCAACTTCCCAAGAAGTG.......................................................................GTTCAAAATGGGGCCTTTTGCATTAGCTTTGGATACAAAGAATTCTTTTGCAACCTCCTCTTCTGCTACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCATCTGGCAGAAAAATGGATAACCTTCAGATGGTACCAAAAAAGTTCTTTGCATCAATCAACAACGGAGAAGAGAAACCATTTGATTTTCTACGGATACTATTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGTGATAGCAGGAGGGACCGCCGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACAATAAAGACACGGCTGCAG.................................................................................................................................................................................................................................................................................................................................................................................................GTAGCTCGTGGTGGAGGACAAATAGCCTTGAAGGGGTTGTATTCTGGGCTTCTTGGAAATCTTGCTGGAGTCCTACC......................................................................................................................................................................................................................GGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAG.............................................................................................................................................GTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCG.................................................................................................................................GGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAG...........................................................................................................................................................GGTTCTGCCAATCAATACAAAGGCATTGTTGATTGTGTGAAGACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E324568" ref_strand="+" ref_description="SGN-E324568 [cTOC-9-J21]">
      <seq>gcttctgctatttttggtggtgtatatgaaccggcaaagcagaagctgttgaagatgtttcctgaaaatcttagtgctgtggcccatcttactgctggtgctttaggaggcattgcagcttcctttgtccgtgttccaactgaggtcattaagcagcgaatgcaaactacgcaatttgcttccgctcctgatgctgttcgcttaatactctcaaaagaatgttttaaaggactatatgcaggatatcgctcctgattgctatgagattgaccataggatgccttcctattctctatctctgaacagctgcggatacgttataatctggctgcccaaagggaattgaatgatccacagaatgcagttatcggtgcttttgctggtgctctaactggagctataactactcctcttgatgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="36113" stop="32648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35813" g_stop="35724" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35723" i_stop="34854" i_length="870">
            <donor d_prob="0.654" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34853" g_stop="34800" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="144" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34799" i_stop="34659" i_length="141">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.986" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34658" g_stop="34563" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="240" r_length="96" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34562" i_stop="34434" i_length="129">
            <donor d_prob="0.952" d_score="0.90"/>
            <acceptor a_prob="0.982" a_score="0.70"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34433" g_stop="34344" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="330" r_length="90" r_score="0.778"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34343" i_stop="33917" i_length="427">
            <donor d_prob="0.958" d_score="0.84"/>
            <acceptor a_prob="0.972" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="33916" g_stop="33865" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="382" r_length="52" r_score="0.942"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="33864" i_stop="32987" i_length="878">
            <donor d_prob="0.986" d_score="0.94"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32986" g_stop="32948" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="421" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E324568" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35813" e_stop="35724"/>
          <exon e_start="34853" e_stop="34800"/>
          <exon e_start="34658" e_stop="34563"/>
          <exon e_start="34433" e_stop="34344"/>
          <exon e_start="33916" e_stop="33865"/>
          <exon e_start="32986" e_stop="32948"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTTGTGAGAATTTCTCCTCCCATTGTCATGACTGCATTTTTGATCTTGTTTTTTAGTTTTTTTAAATCAAGCTGGTCTTGTTTTCTAGCTTGTGATGTGACATACGACATACACCAATTCATTAATAGAACTTATGTGAATAAAAATCATATTTAGAACTTTCTAGTGGGTGTTTGATGGAATATACTGTTTTCATAGTCATTATTCCCCACGAAAAAAGAAAAAGGTACCACATGAAGCAGAATTTGAGGACTAAAAGGAATACAACTGTCAGTGTACTAGACGATATGATACATCATGAAACTCAGGTAATTAGCTAGTGGAAACGTATCTGCAATGAAATAAGCCAAGAAACATGACATAAATCTTGCAGTATGTCAAGCACACACTAAGAGGGTGTTTGGATTGGCTTAAAAGTTGGTCAAACCTACTTTTAAGTCAGTTTTTGACTTCTGGAAGTGTTTGGCTAATATGAAAATAATTTAAAATAAGTAAAAAATGACTTACAATAAGTTGAGAAGTGTTTGGTAAGGTAAAAAATGACATAAAATAACTTTAAAATGACTTAAAATAAGTCAAAAACCAAAAGTAGGTCTCCCCCTACTTTTTATTTTTTTGACTTAAAAGTCATTTCAGTTTGACTTTTTATTTTTGACTTTAAAGTTACTTTTTTTAAGCCAATCCAAACGGGCTAAACACTGGTTACTGATAACATGAATTCGTATCACCTCATGAATTATAATTTATTGCTGTAAATTATACATGCATTTTACTCTATTCTTCAAGTATGTGACGTCTGAATTCTAAAGCATGCATATTACTCATTCAATTGTGATTTATGTTTCATAATAAGAACTGCCAAATTTAATGCAGACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAGGTGAATGATTTTTTTTTTTTTTTTGAGATTTTCAGTTTCCTGAATATCATGATTCTCCTTTTGTTATCATTCTTGATTTTGCCTGTTTAGGATATTCCCTTTGTTAATCTATTGATTGCACTTGGTTTCTTGACACTACAGGTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCGGTATGCTAGTTCTTTAATGTCACATATCTAGTTCATTACTGTTTTCAGGTATTCCTGGTTAGCCGGGTGCAACTTTCACACGATAGATATAACATTGGTTTATTTTATTGTAATATGGGGATTTTGTAGGGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCTGTAAGTATTCTTCTTTCCAAGATGTTGAGACCAACTTCTCAGAGTATTATATGAAAGTTACCCATTTCTCTGTTGAATAATTATGTGTGATAGAGCTTCATTCGCATGTAGTCTAAATTTTGATGTACAGCTAAAGAAAATAAGAAAAGGTATTGCATAAACTGGTATATTAATACTTGAGCAGAAATTCTCTGAGCTGGTTTCTTCTTGTCTTTCCTCCTTGCGTGCTTGACTTCTCACTTCAGTAGCATCAAAAGTTCACGGAATAGTGTTTAAACTAACAAAATGAGGAGCTTTAAATTTGCTTTTCCATGTCCATCATGGATGGGGATGATCAGATGCTTTACTGTTTGATTGAAAAAGGTATGGCACTAGTCTCTTAAATGGTTAGTTTGATATCAGAGCTGCCTTATGTACCTCTTACCAGGCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTGGTAAACCACCTTCATAGCCCTATTACATGTCCATCTTTTGGTAGGCCTTGATAGGGCATGCTATTTTTATTTTAATAATTCAGCTGCTGTCTAGAGGGTGTCACTTGCTCTTTCATCTAAGCTTGAAGTATCAAGAAATCTAGGCTCAAGTAGAGATAAGTTGTACATTGCACAATTAACAGGGTGTTTTAACTTTTTATTTGAATCAAACTAATTTCCCATTAATGACTTAAACGACATAATGACCTCTACATTTTGACTTCCTCCTTTGGATTAATAAATTGGAGTGGGAAATGATAAAGCATGGCTAACTTCAAGAACAAAACAAGCATTTGACATCTATTCTTGTTTGAATTTCTGTAGATTCAGAACCTATGGATTTTATGAAGTAGAAAGCTGAATTGCAGGGTTCTTTAATCATACTCTTGAAGAGTTGTAGACTGATCCATGAATAAGGAAATCCTTTGGTCTGGAATCTCCTCAAAAGAGCTGTCAGTTAAAATTGCCCTACTAGTGCTGGAACACATCAATGAAATTTATTCATTACTGATTTGTTTTTTTTTTGTTATGGGGGAATTTGGGACACAAATGGTACCTGTTAAAAATCATGCATCAAAGTGTTCTTCAAGTAAAAGAAAAGACTGTTGAATTTCCATTTCAGTGAATGAATATGCAATGTTGAGCGACGATTGACATGATTATATGACTAAAAGTAATTGCTGTGTGGGAAATGCAAATTACTGAATTTCTGTTTGTTTAGCCTGTCTAGATTTATAACTTTTCATGTTGCTGCAGTAAATATATGATTTTCCTGAGTCTGCAAGTATATTATGAACCCCTTCTCTAAAGCTATCAATGGCTACCGTTACTTCTTGCAGGTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCA</genome_strand>
        <mrna_strand>GCTTCTGCTATTTTTGGTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAG.............................................................................................................................................GTCATTAAGCAGCGAATGCAAACTACGCAATTTGCTTCCGCTCCTGATGCTGTTCGCTTAATACTCTCAAAAGAATGTTTTAAAGGACTATATGCA.................................................................................................................................GGATATCGCTCCTGATTGCTATGAGATTGACCATAGGATGCCTTCCTATTCTCTATCTCTGAACAGCTGCGGATACGTTATAATCTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAAGGGAATTGAATGATCCACAGAATGCAGTTATCGGTGCTTTTGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E331430" ref_strand="+" ref_description="SGN-E331430 [cTOD-9-D4]">
      <seq>aaaatcaccattttcctattatcacatatcgtactgaatgtaatccaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagttattgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaagttaaattgtttgattctgatcattggactgttaagtattttgctggtacaggaattgaagtcatgcttggattaccaaataatcaattggaaaaatttgctaatgattatgattttgctaaggaatgggtcaaaaataatgttagtgcacatttgtataatggaggtgttgatatcaagtttgtggcagttggaaatgaaccatttttgaaagcatacaatggttcatttttgaaaacaacatttccagctttacaaaatgtacaaaaagccctaaattcagctggccttggtgacaaaatcaaaactacaatcccacaaaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40307" stop="41990"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40607" g_stop="41023" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41024" i_stop="41544" i_length="521">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41545" g_stop="41690" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="563" r_length="146" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E331430" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40607" e_stop="41023"/>
          <exon e_start="41545" e_stop="41690"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCACCATTTTCCTATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAAGTAAGCACCACCATGCATTTTCCTATCTCTTTATACGCTGTATGTGTCTAATGGTTTAATTTTATATCGGTTTAAATGTCTATTTTTATACATAAATGTCAGCTGAAACCAAGTTAAATGGTATATTTATGTATCAATATCTGACATAATATATAAACGTACTCTTTAACACACAATTATATCCTCTAACTTTGGGTGTGCACAAGAAGACACTTATAAAATTGAACAAATAGTCACATGCTGCCTACGTGATAGATATCCTACATGCATGACAGTTTTGTGTTCTATGTGGTGTCCTACGTGTATTATGTCACGTATGATGTGTGTGCCTTTGCTGGTTCAATTTAGTATGAGATTTAAGTATCTGTTCATCCACACTCAAAGTTGGAAAACATATATGTCAACTGAAATCAGATTTTCTAAAGCTTCACAACTATTTTGGATAAGTTAAACGGTGTATTTATGTATTATTGCTATGTCGCAAATTATGATTATTTCTTTTTTTTTTTCTTCTCTTGAAGGTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAAACAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAATCAAAGCTACAATCCCACAAAACG</genome_strand>
        <mrna_strand>AAAATCACCATTTTCCTATTATCACATATCGTACTGAATGTAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAAACAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAATCAAAACTACAATCCCACAAAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363253" ref_strand="+" ref_description="SGN-E363253 [cLPP-4-C23]">
      <seq>ccccgggctgcaggaaaatcaccatttttctattatcatatatcgtactgaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaagttaaattgtttgattctgatcattggactgttaagtattttgctggtacaggaattgaagtcatgcttggattaccaaataatcaattggaaaaatttgctaatgattatgattttgctaaggaatgggtcaaaaataatgttagtgcacatttgtataatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40307" stop="41308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40607" g_stop="41008" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="416" r_length="402" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E363253" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40607" e_stop="41008"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCACCATTTTCCTATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGG</genome_strand>
        <mrna_strand>AAAATCACCATTTTTCTATTATCATATATCGTACTGAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547003" ref_strand="+" ref_description="SGN-E547003 [TUS-70-K14]">
      <seq>aatcaccatttttctattatcatatatcgtactgaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaagttaaattgtttgattctgatcattggactgttaagtattttgctggtacaggaattgaagtcatgcttggattaccaaataatcaattggaaaaatttgctaatgattatgattttgctaaggaatgggtcaaaaataatgttagtgcacatttgtataatggaggtgttgatatcaagtttgtggcagttggaaatgaaccatttttgaaagcatacaatggttcatttttgaaatcaacatttccagctttacaaaatgtacaaaaagccctaaattcagctggccttggtgacaaaatcaaagctaccatcccacaaaacgccgacgtttacgagtccggtaattcgggtccatcacagggcaatttccgatcggacataagggacctaatgcaaaaaatttgtcgtttctttaaagacaacaacgcccctttccttgtaaatatttacccctttcttaagtctccacgaaaacaaacactttcctatagaatttgcgttttttgatggtcaaancaaggcagtacgtgacaatgggatatcgtacactaatatgttcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40309" stop="42230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40609" g_stop="41023" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41024" i_stop="41544" i_length="521">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41545" g_stop="41930" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="802" r_length="387" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E547003" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40609" e_stop="41023"/>
          <exon e_start="41545" e_stop="41930"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACCATTTTCCTATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAAGTAAGCACCACCATGCATTTTCCTATCTCTTTATACGCTGTATGTGTCTAATGGTTTAATTTTATATCGGTTTAAATGTCTATTTTTATACATAAATGTCAGCTGAAACCAAGTTAAATGGTATATTTATGTATCAATATCTGACATAATATATAAACGTACTCTTTAACACACAATTATATCCTCTAACTTTGGGTGTGCACAAGAAGACACTTATAAAATTGAACAAATAGTCACATGCTGCCTACGTGATAGATATCCTACATGCATGACAGTTTTGTGTTCTATGTGGTGTCCTACGTGTATTATGTCACGTATGATGTGTGTGCCTTTGCTGGTTCAATTTAGTATGAGATTTAAGTATCTGTTCATCCACACTCAAAGTTGGAAAACATATATGTCAACTGAAATCAGATTTTCTAAAGCTTCACAACTATTTTGGATAAGTTAAACGGTGTATTTATGTATTATTGCTATGTCGCAAATTATGATTATTTCTTTTTTTTTTTCTTCTCTTGAAGGTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAAACAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAATCAAAGCTACAATCCCACAAAACGCCGACGTTTACGAGTCGGGTAATTCGGGTCCATCACAGGGCGATTTCCGATCGGACATAAGGGACCTAATGCAAAAAATTTGTCGTTTCTTTAAAGACAACAACGCCCCTTTCCTTGTAAATATTTA-CCCTTTCTTAAGTCTCCACGAAAACAAACACTTCCCTCTAGAATTTGCGTTTTTCGATGGTCAAACAAAGGCAGTACGTGACAATGGGATATCGTACACTAATATGTTCGATG</genome_strand>
        <mrna_strand>AATCACCATTTTTCTATTATCATATATCGTACTGAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAATCAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAATCAAAGCTACCATCCCACAAAACGCCGACGTTTACGAGTCCGGTAATTCGGGTCCATCACAGGGCAATTTCCGATCGGACATAAGGGACCTAATGCAAAAAATTTGTCGTTTCTTTAAAGACAACAACGCCCCTTTCCTTGTAAATATTTACCCCTTTCTTAAGTCTCCACGAAAACAAACACTTTCCTATAGAATTTGCGTTTTTTGATGGTCAAANCAAGGCAGTACGTGACAATGGGATATCGTACACTAATATGTTCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547010" ref_strand="+" ref_description="SGN-E547010 [TUS-70-K18]">
      <seq>aatcaccatttttctattatcatatatcgtactgaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaagttaaattgtttgattctgatcattggactgttaagtattttgctggtacaggaattgaagtcatgcttggattaccaaataatcaattggaaaaatttgctaatgattatgattttgctaaggaatgggtcaaaaataatgttagtgcacatttgtataatggaggtgttgatatcaagtttgtggcagttggaaatgaaccatttttgaaagcatacaatggttcatttttgacatcaacatttccagctttacaaaatgtacaaaaagccctaaattcagctggccttggtgacaaaaatcaaagctaccatcccacaaaacgccgacctttacgagtccggtaattcgggtccatcacagggcaatttccgatcggacataagggacctaatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40309" stop="42063"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40609" g_stop="41023" g_length="415"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="415" r_length="415" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41024" i_stop="41544" i_length="521">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41545" g_stop="41763" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="635" r_length="220" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E547010" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40609" e_stop="41023"/>
          <exon e_start="41545" e_stop="41763"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCACCATTTTCCTATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAAGTAAGCACCACCATGCATTTTCCTATCTCTTTATACGCTGTATGTGTCTAATGGTTTAATTTTATATCGGTTTAAATGTCTATTTTTATACATAAATGTCAGCTGAAACCAAGTTAAATGGTATATTTATGTATCAATATCTGACATAATATATAAACGTACTCTTTAACACACAATTATATCCTCTAACTTTGGGTGTGCACAAGAAGACACTTATAAAATTGAACAAATAGTCACATGCTGCCTACGTGATAGATATCCTACATGCATGACAGTTTTGTGTTCTATGTGGTGTCCTACGTGTATTATGTCACGTATGATGTGTGTGCCTTTGCTGGTTCAATTTAGTATGAGATTTAAGTATCTGTTCATCCACACTCAAAGTTGGAAAACATATATGTCAACTGAAATCAGATTTTCTAAAGCTTCACAACTATTTTGGATAAGTTAAACGGTGTATTTATGTATTATTGCTATGTCGCAAATTATGATTATTTCTTTTTTTTTTTCTTCTCTTGAAGGTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAAACAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGAC-AAAATCAAAGCTACAATCCCACAAAACGCCGACGTTTACGAGTCGGGTAATTCGGGTCCATCACAGGGCGATTTCCGATCGGACATAAGGGACCTAATGCA</genome_strand>
        <mrna_strand>AATCACCATTTTTCTATTATCATATATCGTACTGAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGACATCAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAAATCAAAGCTACCATCCCACAAAACGCCGACCTTTACGAGTCCGGTAATTCGGGTCCATCACAGGGCAATTTCCGATCGGACATAAGGGACCTAATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361336" ref_strand="+" ref_description="SGN-E361336 [cLPP-6-C9]">
      <seq>atcaccatttttctattatcatatatcgtactgaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgatgaagttaaattgattgattctgatcattggactgttaactattttgctggtacaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40310" stop="41199"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40610" g_stop="40899" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E361336" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40610" e_stop="40899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACCATTTTCCTATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAA</genome_strand>
        <mrna_strand>ATCACCATTTTTCTATTATCATATATCGTACTGAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATGAAGTTAAATTGATTGATTCTGATCATTGGACTGTTAACTATTTTGCTGGTACAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364264" ref_strand="+" ref_description="SGN-E364264 [cLPP-20-K23]">
      <seq>tttttctattatcatatatcgtacggaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaaattaaattgtttgattctgatcattggactgttaagtattttgctggtacaggaattgaagtcatgcttggattaccaaataatcaattggaaaaatctgctaatgattatgattttgcttaggaatgggtcaaaaataatgttagtgcacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40317" stop="41298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40617" g_stop="40998" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E364264" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>382</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40617" e_stop="40998"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCTATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATT</genome_strand>
        <mrna_strand>TTTTTCTATTATCATATATCGTACGGAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAATTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATCTGCTAATGATTATGATTTTGCTTAGGAATGGGTCAAAAATAATGTTAGTGCACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E363102" ref_strand="+" ref_description="SGN-E363102 [cLPP-19-K1]">
      <seq>tattatcatatatcgtactgaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagtattgcttatggtctatgtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaagttaaactgtttgattctgatcattggactgttaagtattttgctggcacaggaattgaagtcatgcttggattaccaaataatcaattggatgaatttgctcatgattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40323" stop="41256"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40623" g_stop="40956" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E363102" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E363102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40623" e_stop="40956"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATG</genome_strand>
        <mrna_strand>TATTATCATATATCGTACTGAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTATTGCTTATGGTCTATGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAACTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGCACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGATGAATTTGCTCATGATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361754" ref_strand="+" ref_description="SGN-E361754 [cLPP-12-A9]">
      <seq>tactgaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaagttaaattgtttgattctgatcattggactgttaagtattttgctggtacaggaattgaagtcatgcttggattaccaaataatcaattggaaaaatttgctaatgattatgattttgctaaggaatgggtcaaaaataatgttagtgcacatttgtataatggaggtgttgatatcaagtttgtggcagttggaaatgaaccatttttgaaagcatacaatggttcatttttgaaatcaacatttccagctttacaaaatgtacaaaaagccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40338" stop="41940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40638" g_stop="41023" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41024" i_stop="41544" i_length="521">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41545" g_stop="41640" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="482" r_length="96" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E361754" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361754" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40638" e_stop="41023"/>
          <exon e_start="41545" e_stop="41640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAAGTAAGCACCACCATGCATTTTCCTATCTCTTTATACGCTGTATGTGTCTAATGGTTTAATTTTATATCGGTTTAAATGTCTATTTTTATACATAAATGTCAGCTGAAACCAAGTTAAATGGTATATTTATGTATCAATATCTGACATAATATATAAACGTACTCTTTAACACACAATTATATCCTCTAACTTTGGGTGTGCACAAGAAGACACTTATAAAATTGAACAAATAGTCACATGCTGCCTACGTGATAGATATCCTACATGCATGACAGTTTTGTGTTCTATGTGGTGTCCTACGTGTATTATGTCACGTATGATGTGTGTGCCTTTGCTGGTTCAATTTAGTATGAGATTTAAGTATCTGTTCATCCACACTCAAAGTTGGAAAACATATATGTCAACTGAAATCAGATTTTCTAAAGCTTCACAACTATTTTGGATAAGTTAAACGGTGTATTTATGTATTATTGCTATGTCGCAAATTATGATTATTTCTTTTTTTTTTTCTTCTCTTGAAGGTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAAACAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCT</genome_strand>
        <mrna_strand>TACTGAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAATCAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E360353" ref_strand="+" ref_description="SGN-E360353 [cLPP-8-M14]">
      <seq>gaatataatctaacgtaacgtatatagaagctagtggattagcactagcaatggctcatattaagtttttgatatgggcatgttgcttagcgctatcgactagttttgcttatggtctaggtgttaattggggtacacaagctgcacaaacattgcccccttcaacaattgttcaaatgcttaaagataacaagattgataaagttaaattgtttgattctgatcattggactgttaagtattttgctggtacaggaattgaagtcatgcttggattaccaaataatcaattggaaaaatttgctaatgattatgattttgctaaggaatgggtcaaaaataatgttagtgcacatttgtataatggaggtgttgatatcaagtttgtggcagttggaaatgaaccatttttgaaagcatacaatggttcatttttgaaatcaacatttccagctttacaaaatgtacaaaaagccctaaattcagctggccttggtgacaaaatcaaagctaccatcccacaaaacgccgacgtttacgagtccggtaattcgggtccatcacagggcaatttccgatcggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="40342" stop="42047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40642" g_stop="41023" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="41024" i_stop="41544" i_length="521">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41545" g_stop="41747" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="585" r_length="203" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E360353" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E360353" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40642" e_stop="41023"/>
          <exon e_start="41545" e_stop="41747"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAAGTAAGCACCACCATGCATTTTCCTATCTCTTTATACGCTGTATGTGTCTAATGGTTTAATTTTATATCGGTTTAAATGTCTATTTTTATACATAAATGTCAGCTGAAACCAAGTTAAATGGTATATTTATGTATCAATATCTGACATAATATATAAACGTACTCTTTAACACACAATTATATCCTCTAACTTTGGGTGTGCACAAGAAGACACTTATAAAATTGAACAAATAGTCACATGCTGCCTACGTGATAGATATCCTACATGCATGACAGTTTTGTGTTCTATGTGGTGTCCTACGTGTATTATGTCACGTATGATGTGTGTGCCTTTGCTGGTTCAATTTAGTATGAGATTTAAGTATCTGTTCATCCACACTCAAAGTTGGAAAACATATATGTCAACTGAAATCAGATTTTCTAAAGCTTCACAACTATTTTGGATAAGTTAAACGGTGTATTTATGTATTATTGCTATGTCGCAAATTATGATTATTTCTTTTTTTTTTTCTTCTCTTGAAGGTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAAACAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAATCAAAGCTACAATCCCACAAAACGCCGACGTTTACGAGTCGGGTAATTCGGGTCCATCACAGGGCGATTTCCGATCGGACA</genome_strand>
        <mrna_strand>GAATATAATCTAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTTTTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAATCAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAATCAAAGCTACCATCCCACAAAACGCCGACGTTTACGAGTCCGGTAATTCGGGTCCATCACAGGGCAATTTCCGATCGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E364043" ref_strand="+" ref_description="SGN-E364043 [cLPP-16-L21]">
      <seq>acaaaacgccgacgtttacgagtccggtaattcgggtccatcacagggcaatttccgatcggacataagggacctaatgcaaaaaatttgtcgtttctttaaagacaacaacgcccctttccttgtaaatatttaccctttcttaagtctccacgaaaacaaacacttccctatagaatttgcgttttttgatggtcaaacaaaggcagtacgtgacaatgggatatcgtacactaatatgttcgatgcaaatttggacacattagttgtatcgttgaaaaaagcaagttgttcaggtgtgaaaataataattggtgaaattggttggccaacagatggagatttatatgcaaatgttacattagccaaaagattttatagtggattttttaagaaaatggctactaaaaaaggaacaccattataccctggatttattgaatattatttatttagtttgacagatgaaaatcaaaaaagtattttaccaggaagttttgaacgtcattggggtatttttagatatgatggaaaacctaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="41383" stop="42523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41683" g_stop="42223" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E364043" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E364043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41683" e_stop="42223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACGCCGACGTTTACGAGTCGGGTAATTCGGGTCCATCACAGGGCGATTTCCGATCGGACATAAGGGACCTAATGCAAAAAATTTGTCGTTTCTTTAAAGACAACAACGCCCCTTTCCTTGTAAATATTTACCCTTTCTTAAGTCTCCACGAAAACAAACACTTCCCTCTAGAATTTGCGTTTTTCGATGGTCAAACAAAGGCAGTACGTGACAATGGGATATCGTACACTAATATGTTCGATGCAAATTTGGACACATTAGTTGTATCGCTGAAAAAAGCAAGTTGTTCAGGTGTGAAAATAATAGTTGGTGAAATTGGTTGGCCAACAGATGGAGATTTATATGGAAATGTTACATTAGCCAAAAGATTTTATAGTGGATTTTTTAAGAAAATGGCTACTAAAAAAGGAACACCATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTAACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAA</genome_strand>
        <mrna_strand>ACAAAACGCCGACGTTTACGAGTCCGGTAATTCGGGTCCATCACAGGGCAATTTCCGATCGGACATAAGGGACCTAATGCAAAAAATTTGTCGTTTCTTTAAAGACAACAACGCCCCTTTCCTTGTAAATATTTACCCTTTCTTAAGTCTCCACGAAAACAAACACTTCCCTATAGAATTTGCGTTTTTTGATGGTCAAACAAAGGCAGTACGTGACAATGGGATATCGTACACTAATATGTTCGATGCAAATTTGGACACATTAGTTGTATCGTTGAAAAAAGCAAGTTGTTCAGGTGTGAAAATAATAATTGGTGAAATTGGTTGGCCAACAGATGGAGATTTATATGCAAATGTTACATTAGCCAAAAGATTTTATAGTGGATTTTTTAAGAAAATGGCTACTAAAAAAGGAACACCATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTGACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E549464" ref_strand="+" ref_description="SGN-E549464 [TUS-70-K14](-)">
      <seq>ttttttgatgtcaaacaaaggcagtacgtgacaatgggatatcgtacactaatatgttcgatgcaaatttggacacattagttgtatcgttgaaaaaagcaagttgttcaggtgtgaaaataataattggtgaaattggttggccaacagatggagatttatatgcaaatgttacattagccaaaagattttatagtggattttttaagaaaatggctactaaaaaaggaacaccattataccctggatttattgaatattatttatttagtttgacagatgaaaatcaaaaaagtattttaccaggaagttttgaacgtcattggggtatttttagatatgatggaaaacctaaatttccaatggatattacaggacaaggacatgaaacaatgcctattggtgcaaaaaatgttaagtatttggaaaacaaatggtgtgttttgaacaaatatgctgaagataaaggtaaactaccatcaagtgtacaatatgcttgttcaaggtcagattgtacagcagtggattatggaggatcatgcaacaagttagatggagatggaaatgtatcatatgcattcaacatgtattttcaaatgaatggtcaagatgttgaatcttgtgtttttgatggattggcacaaattgtggagaaaaatgcttctgttgataattgcttattccctattggtttggagagtgttggagtaagaattggttttgatgcaatccttaacattcttgttggtttcttcctctttttgacacttctctaaataaaataataacaatgtcatgtattagacatttctttggtttcaaatatataaataattaatatataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="41567" stop="43375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41867" g_stop="42335" g_length="469"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42336" i_stop="42699" i_length="364">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42700" g_stop="43084" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="853" r_length="385" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E549464" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E549464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41867" e_stop="42335"/>
          <exon e_start="42700" e_stop="43084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCGATGGTCAAACAAAGGCAGTACGTGACAATGGGATATCGTACACTAATATGTTCGATGCAAATTTGGACACATTAGTTGTATCGCTGAAAAAAGCAAGTTGTTCAGGTGTGAAAATAATAGTTGGTGAAATTGGTTGGCCAACAGATGGAGATTTATATGGAAATGTTACATTAGCCAAAAGATTTTATAGTGGATTTTTTAAGAAAATGGCTACTAAAAAAGGAACACCATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTAACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAATTCCCAATGGATATTACAGGACAAGGACATGAAACAATGCCTATTGGGGCAAAAAATGTTAAGTATTTGGAGAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATATTGGTAAAATTTTCAACTTCACTTTTTTGTTTCTTATTTAATGTTCGTTGTACCAGAAAAAGTCCGTCAACAATAATTTCATTCCTAGGGTCAGAACTCAAGATCTTGGAACTTGATATCTCTGAATAATGATGAAGGACTACTTACACTATCAGATCTCTGAATATGAGGATATTTTTTTGGGATTAGTATGAAAATTAGCATGAAAATAAGTTTTATGCGGATTTTTCATACTACTCCCTAAGAAAATCTCCATGTAATTCACAGTTGTTTTGTAGTGTTATCGGTCACTCCATCACGACCTTAATAATTAGTAATTTTGTCATTTCGACATATACATGAATACTGAGACGTTGTTGTTACGTAGGTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGGAATGTATCATATGCATTCAACATGTATTTCCAAATGAATGGCCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCAAAAATTGTGGAGAAAAATGCTTCTGTTGATAGTTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTGTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGAAATTTCTTTGGTTTCAAATATATAATTAATTAACATATATTTACTTAC</genome_strand>
        <mrna_strand>TTTTTTGAT-GTCAAACAAAGGCAGTACGTGACAATGGGATATCGTACACTAATATGTTCGATGCAAATTTGGACACATTAGTTGTATCGTTGAAAAAAGCAAGTTGTTCAGGTGTGAAAATAATAATTGGTGAAATTGGTTGGCCAACAGATGGAGATTTATATGCAAATGTTACATTAGCCAAAAGATTTTATAGTGGATTTTTTAAGAAAATGGCTACTAAAAAAGGAACACCATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTGACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAATTTCCAATGGATATTACAGGACAAGGACATGAAACAATGCCTATTGGTGCAAAAAATGTTAAGTATTTGGAAAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATAAAG............................................................................................................................................................................................................................................................................................................................................................................GTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGAAATGTATCATATGCATTCAACATGTATTTTCAAATGAATGGTCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCACAAATTGTGGAGAAAAATGCTTCTGTTGATAATTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTTTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGACATTTCTTTGGTTTCAAATATATAAATAATTAATATATAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547631" ref_strand="+" ref_description="SGN-E547631 [TUS-71-J20](-)">
      <seq>aaattggttggccaacagatggagatttatatgcaaatgttacattagccaaaagattttatagtggattttttaagaaaatggctactaaaaaaggaaacaccattataccctggatttattgaatattatttatttagtttgacagatgaaaatcaaaaaagtattttaccaggaagttttgaacgtcattggggtatttttagatatgatggaaaacctaaatttccaatggatattacaggacaaggacatgaaacaatgcctattggtgcaaaaaatgttaagtatttggaaaacaaatggtgtgttttgaacaaatatgctgaagataaaggtaaactaccatcaagtgtacaatatgcttgttcaaggtcagattgtacagcagtggattatggaggatcatgcaacaagttagatggagatggaaatgtatcatatgcattcaacatgtattttcaaatgaatggtcaagatgttgaatcttgtgtttttgatggattggcacaaattgtggagaaaaatgcttctgttgataattgcttattccctattggtttggagagtgttggagtaagaattggttttgatgcaatccttaacattcttgttggtttcttcctctttttgacacttctctaaataaaataataacaatgtcatgtattagacatttctttggtttcaaatatataaataattaatatatatttacttacttcgttaataaatttaggtgtctcattttgtatgtatatttatattaccataagacactcaagttttgttgtaggaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="41700" stop="43471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42000" g_stop="42335" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42336" i_stop="42699" i_length="364">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42700" g_stop="43172" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="809" r_length="472" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E547631" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42000" e_stop="42335"/>
          <exon e_start="42700" e_stop="43172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGTTGGCCAACAGATGGAGATTTATATGGAAATGTTACATTAGCCAAAAGATTTTATAGTGGATTTTTTAAGAAAATGGCTACTAAAAAAGG-AACACCATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTAACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAATTCCCAATGGATATTACAGGACAAGGACATGAAACAATGCCTATTGGGGCAAAAAATGTTAAGTATTTGGAGAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATATTGGTAAAATTTTCAACTTCACTTTTTTGTTTCTTATTTAATGTTCGTTGTACCAGAAAAAGTCCGTCAACAATAATTTCATTCCTAGGGTCAGAACTCAAGATCTTGGAACTTGATATCTCTGAATAATGATGAAGGACTACTTACACTATCAGATCTCTGAATATGAGGATATTTTTTTGGGATTAGTATGAAAATTAGCATGAAAATAAGTTTTATGCGGATTTTTCATACTACTCCCTAAGAAAATCTCCATGTAATTCACAGTTGTTTTGTAGTGTTATCGGTCACTCCATCACGACCTTAATAATTAGTAATTTTGTCATTTCGACATATACATGAATACTGAGACGTTGTTGTTACGTAGGTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGGAATGTATCATATGCATTCAACATGTATTTCCAAATGAATGGCCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCAAAAATTGTGGAGAAAAATGCTTCTGTTGATAGTTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTGTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGAAATTTCTTTGGTTTCAAATATATAATTAATTAACATATATTTACTTACTTCGTTAAAAAATTTAGGTGTCTCATTTTGTATGTATATTTATATAACCATAAGACACTCAAGTTTTGTTGTATGGGAAGGAATAAAT</genome_strand>
        <mrna_strand>AAATTGGTTGGCCAACAGATGGAGATTTATATGCAAATGTTACATTAGCCAAAAGATTTTATAGTGGATTTTTTAAGAAAATGGCTACTAAAAAAGGAAACACCATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTGACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAATTTCCAATGGATATTACAGGACAAGGACATGAAACAATGCCTATTGGTGCAAAAAATGTTAAGTATTTGGAAAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATAAAG............................................................................................................................................................................................................................................................................................................................................................................GTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGAAATGTATCATATGCATTCAACATGTATTTTCAAATGAATGGTCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCACAAATTGTGGAGAAAAATGCTTCTGTTGATAATTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTTTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGACATTTCTTTGGTTTCAAATATATAAATAATTAATATATATTTACTTACTTCGTTAATAAATTTAGGTGTCTCATTTTGTATGTATATTTATATTACCATAAGACACTCAAGTTTTGTTGTA-GGAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E547009" ref_strand="+" ref_description="SGN-E547009 [TUS-70-K18](-)">
      <seq>aaaaaaggaacaccaattatcccctggatttattgaatattatttatttagtttgacagatgaaaatcaaaaaagtattttaccaggaagttttgaacgtcattggggtatttttagatatgatggaaaacctaaatttccaatggatattacaggacaaggacatgaaacaatgcctattggtgcaaaaaatgttaagtatttggaaaacaaatggtgtgttttgaacaaatatgctgaagataaaggtaaactaccatcaagtgtacaatatgcttgttcaaggtcagattgtacagcagtggattatggaggatcatgcaacaagttagatggagatggaaatgtatcatatgcattcaacatgtattttcaaatgaatggtcaagatgttgaatcttgtgtttttgatggattggcacaaattgtggagaaaaatgcttctgttgataattgcttattccctattggtttggagagtgttggagtaagaattggttttgatgcaatccttaacattcttgttggtttcttcctctttttgacacttctctaaataaaataataacaatgtcatgtattagacatttctttggtttcaaatatataaataattncccctttttaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="41789" stop="43367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42089" g_stop="42335" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="248" r_length="248" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42336" i_stop="42699" i_length="364">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42700" g_stop="43070" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="619" r_length="371" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E547009" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42089" e_stop="42335"/>
          <exon e_start="42700" e_stop="43070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGGAACACC-ATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTAACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAATTCCCAATGGATATTACAGGACAAGGACATGAAACAATGCCTATTGGGGCAAAAAATGTTAAGTATTTGGAGAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATATTGGTAAAATTTTCAACTTCACTTTTTTGTTTCTTATTTAATGTTCGTTGTACCAGAAAAAGTCCGTCAACAATAATTTCATTCCTAGGGTCAGAACTCAAGATCTTGGAACTTGATATCTCTGAATAATGATGAAGGACTACTTACACTATCAGATCTCTGAATATGAGGATATTTTTTTGGGATTAGTATGAAAATTAGCATGAAAATAAGTTTTATGCGGATTTTTCATACTACTCCCTAAGAAAATCTCCATGTAATTCACAGTTGTTTTGTAGTGTTATCGGTCACTCCATCACGACCTTAATAATTAGTAATTTTGTCATTTCGACATATACATGAATACTGAGACGTTGTTGTTACGTAGGTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGGAATGTATCATATGCATTCAACATGTATTTCCAAATGAATGGCCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCAAAAATTGTGGAGAAAAATGCTTCTGTTGATAGTTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTGTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGAAATTTCTTTGGTTTCAAATATATAATTAATTAAC</genome_strand>
        <mrna_strand>AAAAAAGGAACACCAATTATCCCCTGGATTTATTGAATATTATTTATTTAGTTTGACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAATTTCCAATGGATATTACAGGACAAGGACATGAAACAATGCCTATTGGTGCAAAAAATGTTAAGTATTTGGAAAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATAAAG............................................................................................................................................................................................................................................................................................................................................................................GTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGAAATGTATCATATGCATTCAACATGTATTTTCAAATGAATGGTCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCACAAATTGTGGAGAAAAATGCTTCTGTTGATAATTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTTTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGACATTTCTTTGGTTTCAAATATATAAATAATTNCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E361605" ref_strand="-" ref_description="SGN-E361605 [cLPP-6-N18]">
      <seq>aaaaatgttaagtatttggaaaacaaatggtgtgttttgaacaaatatgctgaagataaaggtaaactaccatcaagtgtacaatatgcttgttcaaggtcagattgtacagcagtggattatggaggatcatgcaacaagttagatggagatggaaatgtatcatatgcattcaacatgtattttcaaatgaatggtcaagatgttgaatcttgtgtttttgatggattggcacaaattgtggagaaaaatgcttctgttgataattgcttattccctattggtttggagagtgttggagtaagaattggttttgatgcaatccttaacattcttgttggtttcttcctctttttgacacttctctaaataaaataataacaatgtcatgtattagacatttctttggtttcaaatatataaataattaatatataaaaaaaaaacccaaaaatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="41975" stop="43375"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42275" g_stop="42335" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42336" i_stop="42699" i_length="364">
            <donor d_prob="0.983" d_score="0.94"/>
            <acceptor a_prob="0.911" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42700" g_stop="43074" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="436" r_length="375" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="437" polyA_stop="447"/>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E361605" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361605" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="42275" e_stop="42335"/>
          <exon e_start="42700" e_stop="43074"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGTTAAGTATTTGGAGAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATATTGGTAAAATTTTCAACTTCACTTTTTTGTTTCTTATTTAATGTTCGTTGTACCAGAAAAAGTCCGTCAACAATAATTTCATTCCTAGGGTCAGAACTCAAGATCTTGGAACTTGATATCTCTGAATAATGATGAAGGACTACTTACACTATCAGATCTCTGAATATGAGGATATTTTTTTGGGATTAGTATGAAAATTAGCATGAAAATAAGTTTTATGCGGATTTTTCATACTACTCCCTAAGAAAATCTCCATGTAATTCACAGTTGTTTTGTAGTGTTATCGGTCACTCCATCACGACCTTAATAATTAGTAATTTTGTCATTTCGACATATACATGAATACTGAGACGTTGTTGTTACGTAGGTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGGAATGTATCATATGCATTCAACATGTATTTCCAAATGAATGGCCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCAAAAATTGTGGAGAAAAATGCTTCTGTTGATAGTTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTGTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGAAATTTCTTTGGTTTCAAATATATAATTAATTAACATAT</genome_strand>
        <mrna_strand>AAAAATGTTAAGTATTTGGAAAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATAAAG............................................................................................................................................................................................................................................................................................................................................................................GTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGAAATGTATCATATGCATTCAACATGTATTTTCAAATGAATGGTCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCACAAATTGTGGAGAAAAATGCTTCTGTTGATAATTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTTTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGACATTTCTTTGGTTTCAAATATATAAATAATTAATATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E328131" ref_strand="+" ref_description="SGN-E328131 [cTOC-22-L12]">
      <seq>tggaataactacacatgccttaccgaggaacttggttcgctcgctgaagggattaacaagattaaacccgagtatttgaggtctttccagtttgaaagcaggttgatgttatctatttggattgtagttcgggtagacggttgtcatttccataggttttgtgaagataatggctttcagaagccaaatgatgagcaggcactgaaacttatgaactcttgcgcggtgtctttgctggagatgtttaaggatattatctttgcatatggagtgagtgatgaatacagctttgttttgaagaaagattctctattgtatcagaggtggtcaagtgaaattgtctctgctgttgtttctcttttctcttccatgtatgtgatgaagtggaaagagttttttcctgagaaagagtttaaagaaccaccttattttgatggacgatcagtttgctatccatcatctgagattcttcgagattacttggcttggagacaagttgattgtcacataaacaatcagtacaatacttgtttctggctgctagttaagtctggaaagagcagaactgaagcacaaagctctctngaaggtactcaaactcaagacaagaatgaattgcttgccaagtttggcattgattacaatgcgttaccaatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="+" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="57767" stop="65105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="58067" g_stop="58221" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="155" r_length="155" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="58222" i_stop="62763" i_length="4542">
            <donor d_prob="0.597" d_score="1.00"/>
            <acceptor a_prob="0.760" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62764" g_stop="62895" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="287" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62896" i_stop="62988" i_length="93">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.140" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62989" g_stop="63033" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="332" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="63034" i_stop="63549" i_length="516">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.752" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="63550" g_stop="63719" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="502" r_length="170" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="63720" i_stop="63871" i_length="152">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.712" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="63872" g_stop="63957" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="588" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="63958" i_stop="64733" i_length="776">
            <donor d_prob="0.967" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="64734" g_stop="64805" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="660" r_length="72" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="+" ref_id="SGN-E328131" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E328131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="58067" e_stop="58221"/>
          <exon e_start="62764" e_stop="62895"/>
          <exon e_start="62989" e_stop="63033"/>
          <exon e_start="63550" e_stop="63719"/>
          <exon e_start="63872" e_stop="63957"/>
          <exon e_start="64734" e_stop="64805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAATAACTACACATGCCTTACCGAGGAACTTGGTTCGCTCGCTGAAGGGATTAACAAGATTAAACCCGAGTATTTGAGGTCTTTCCAGTTTGAAAGCAGGTTGATGTTATCTATTTGGATTGTAGTTCGGGTAGACGGTTGTCATTTCCATAGGTAATTCGTGCCTTTATTTCTGCCGACTTGTCTTCTCTTTACTGTTTAGTGACCTCCTGCTCGAATACCAAGAAGTGTTGATATCATTCTTTGTTGATATGTAATTGCGCTTGTCTTTTTATTTTTCCCTTTTCCAGTTGATAACGTTTCTCGTCTGTGATGCTCTTTAGACTGAATTATTCTTTTTGCTTCAAATTCCACGTTTCATGTCAAAAAGATGCATTATTCTTGCTTCTTATTTTCATCAAGCATAAAATTTTGTAGGTAATATGCATTTTCTGGATAACAATATGATTTTCTATTTTGATATTATCAACTCGTTCACCTTCTTTTATATAAGAAGTTGAGGATTTGGAGTTATCCTCATCCTTTATTTGAGAAGTCGATGCTCTGGAAGAAATATTAGCAATATAATCTACTGGGGAAATATAAGAAGAGTTAGATCTAGGCATCCTGGCCTGCAATCCTATACTATCTGTATAACTCATCAATAAATTCTGATCATTAAATTTGATCCTTACCGTTCCATCTGGAGTCTGTTCAATATCAGATATATCCGAATTTATATTATTTCTTGGAGGAACAACTTCCTCAATAACCCATTCTTTAGGAAAATCAATTTCATCCCATTTAATAGGTCGTCTTGTTATAATTTTTGATTTGGTAAAATTTGTTTCTATTAAAATGGTCTCATTTTTAAAATCTATAATTTTACACATAGGATTTAAAATATATAGAGGTTTATAGTAAATTCTATAACAAATACATATAACTTCAGTACCAGGCAAATAATCATACCCATTTAATTTAATACTCAATATTAAAGTATTAAGTGAATTTTCATCATTTAAAGAGATCTGTAAATTAGGATAAACATTAAAATAAACAGGACCATAAGCCAAACTAGTTTGCACTGTCCCTACAAGAGATTTCTTCCAATTCTGATTTCTTCCATCTCTTAGAGCTGCTATAAAGCTCTCTGGTAAGTCTCTTAATGTTAGGGGTTTAAAAGCAACTTGTACCAGACCAATATGCATAAATCTATAATTTTCCCTATAAGGGGCAAAATCATTTCCAGAAAGAAGTTTCAAAGTACCATGATCAGAAACCATAGTAATAGTTTCTTCAGTGGTTTTAACAATTTGTTTAAATCCCATTTTTTCAAATGTTCCCATTTGGTATATTACCTTAGGTTGTATTTTAGGAATTGTCCATCTATTAAGGAGATCAAGCTGTTGAGGCATATCATATTCTTCTTTTCTACTGTTTTTAGCAGTAGCTTGTTTTTTTATGATATTCATAATTAAATCATGACAGATTAACATCACCTACTACTACTGACCACATGGCTCTGATACCATACATGCTAAGTTCCAAAGCTGGCGGTACATGCTAAGTTCCAAGGCTGGCGATAGTCCGCACGGCCATACAGACCTCAACATTTGGCCTTACAGACCTCAACATTTGGAACCAAATACGACGGGATCGCTTCTATGTAACTACCGATTCGTTTACGAGTTAGATAGTCCAAGGATAGAAGGATCTTTTACGGCTCCAACATAGCCCAAATAACGCCTCACACATGGCTTTAACATGGTCCTCAACAGGAACTCCGGACTAAGCCAAGATCTTCTCACTCTCGGACTACATTATTTCGACCCTAGAAGCATCGAAACAGTCCAAGTTCCATGTTGTCCATAGTTTAGGTTGATATTAATCTGTCAGTAAGTGTTTAGCCTATCATTTAGGCTAGATTAAAATAAAAAACAATTTTGAAATAATAATAATAATACCTTTAGTAGATCTTCAGAAACAGATAGCAAGAACAACTGAAATTTTATTTAACTTAAAAGTAGAAATTTACAAGAGTGGAGAGAGGAATACAAAAGATGTGTGGCTCCGTGCCTGCTTTAAAAAATAGAAAAAGGATCCTTTTATAGAGAAGGATCTAAGAAAATGTTAAAAACTATGACATAAGTGCTTACATCATATTATATTATTGGACCGACATAGGGTCCTACTACTTTATAAAGTTATGAAATTATTTACAATTGATTCCGTTCTTTTAGTCCTTTGCGATTCCTTTGCCTTTGGACTCTTTTGTGCTGGAAGATTCTTCCACTTGATTTTGAAATTTTTGAAATATACCAATAATTAAATTTAACTACAGTCTTTTGTTCCGGGTGAGTATATTCTCTTTCCCTCATAGTGCTTGTTCCCCATTTTTTATTATGATTTTTGAAAAGTTATAAACTTTCTTGGTATTCGCTGGGTAGAAGTGCTGAAATTTAGCAGACCCCATTGATGAGAGTATAATCTTCCTGCAACAATTTCAAAATCAAGTGGAAGAATCTTCCAGCATAAAAGAGTCCAAAGACAAAGGAATAGCAAAGGACTAAAAAAACGGAATCAATTGTAAATAATTTCAAAACTTTTATAAAGTAGTAGGACCCTATGTCGGTTCAATAATATAATATGATGTAAGCACTTATGTCATAGTTTTTAACATTTTCTTAGATCCTTCTCTATAAAAGGATCCTTTTTCTATTTTTAAAGCAGGCACGGAGCAACACATCTTTTGTATTCCTCTCTCTACTCTTGTAAATTTCTACTTTTAAGTTAAATAAAATTTCAGTTGTTCTTGCTATCTGTTTTTGAATCAAGTGGAAGAATCTTCCAGCATAAAAGAGTCCAAAGGATGTTTTCTATTATCCTAAGGCCAACCCCTCAGGATATTCTTTTAGAGGAACAAGAGTATATTGTCTCTAATAGTTTTAGTGGAACAGAAATCTATGAATGGAATATTGATGGCTTTACGGATAGGCAGACCCCATCGATGAGAGTATAATCTCATAATGCATCCTGTATTTATAAGTAGGTACACCATATGATGTCGTATCAAAGTATCTTATCATTATTTGCCCATGATCATCTCTTCATTGTAGATCCTTTGGTTCTAAAATGAGTACTATTTCATCTATCTCGTTCTTATCATATATTTCCACATTTTCTATAGCTTCTTCATTAACTATAGATGAATATGATGGCTGAGTTTGTTGTTTGGATTGTATAAAATCCATAAATTCTCTGTACATTGGATGGTTGTCATCAATTCCTGATATTCCAGTAGATGTTCCTATAATATTTGCGGCTATTAGCCTTTAATTTCCTAATTGAGCCAGAATATTATTGTTTCCCGTATGCATTGTTCTTCCTCTTCCTCTTCCTTTATTAGAGGAAGAACTCCAGGATGGTCTCATTATCCTGTAAAAAGAGTTTATTAAATCAAATATCCTCTAGTAAGAAAGTCAGGGAGACTTTTATCTGCTCCTTTCTTATAATATATTTCAAAATCAAATGGGGCTAGTAAAGCTTGCCATCTTGCAAACATTTGTTTGGATACATCATGTTTTACATCTTTGCTAAAAATAAATTAGCTGCTTGGCAATCAGTTTTTATAATAAACTTTTGATTATATAAATCTCCTTGAAATTTTAACACACTTTTTACTATAGCTAAAATTTCTTTAGCTATCGTAGCATAATTTTTCTGGCTATGATTCCATTTTCCTGAATAAAATTGTACAAGATATTCCTTTTTTTTAATAGGAGAAATTTGTTTGAGAATTCCCCCGTAACCAATATCAGAAGCATCCGTCTCAACTATTTTTTTCCAATTGGGATTGGCCAAAGTGAGACATGGTAGGTTATGAACCTTGTTTTTAATATGCTGGACTGCTCTTATAAGATCTTCAGTCCATGGTTTAGGATTCTTTTTAAGTCTATCATACAATATTGCCGTATCTTTGGCTAAATCCTTCATAAAAGGAGAAATATAATTTAGGCTTCCTAAAAATCGCTGAAGCTGAACTTTATCAGTTATAATATTAGGAAATTTTGATGCAAATTCAATACTTCTTTGAATAGGAATAGTTTTTCCTTTTTCAATATTATGACCCAAAAATCTCACAGTTGTTTGAAAAATTTGCATTTTGGTTTAGATATAACCAAGCCATTTTGGATAATAATTTTCTTGAATAAATCAAGATGTTTAAAATGCATTTCCAGAGTTTTTGAAAATATGAGAATATCATCTATGTATGCAATGATAAAATTGCTAAAAGGATTAAAAATATCATTCATAATTTTTTGAAATTCTGAGGGAGCATTTTTCAAGCCAAAAGGCATAACATTCCACTCATATTGTCCCATTGGGACATTAAAGGCTGTTTTGTATTTATTCTTATCAGATATCTGGATTTGCCAGTATCCGAATTTTAAAATTGAATTTCGAAAATATGATGGCGTCATTAAGCCTATCCAAAAGATCTTTCTTATTGGGGATGGGGTATCTGATAAGGATAAATACAAAACAGCCTTTAATGTCCCATTATATATATATGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATGTAATTTCACAAGTATAAAAGTCATGTCAAATATTGAGCATGTAATTCGAGAACTCTAGTTTGGACTTGCTGGTTCATGATCTTGATGGGATCCACTGTAGGTTTTGTGAAGATAATGGCTTTCAGAAGCCAAATGATGAGCAGGCACTGAAACTTATGAACTCTTGCGCGGTGTCTTTGCTGGAGATGTTTAAGGATATTATCTTTGCATATGGAGTGAGTGATGAATACAGGTATTAGTTCATTTAACATCTTTGATTCACTTTTAACATATCGTTTCCTTTTCCTATTTCTTTTATCTTGAGAGAGATCAATTTTTCTTTCAGCTTTGTTTTGAAGAAAGATTCTCTATTGTATCAGAGGTGGTCAAGGTAACTCTTTCATCACCTTTCTTAAGTTCCTAGGTAAGTATAGTGTTTATCTAAAACCACATATTAGGAGGGAACCAATTCAAGGTCAAAAAATCCTTCTTCCTGTTTCTAGAATCCATGATGCTTGTAGATTATTTTGACACCACTCAGCTGCAGTTGCCAACCTGCAAGAACATAGTGCAATTATCTGTGAACAACATGCTAAAAGATCCTGCAAAACTTCATTTCTTGTGCGTAATGCAAGTTTTGTCAGAATGTGTCCTATAAAATGCTTGCTTGTCTGAATGGTGGAATTTCCCTTCTAGAATATTTTGCATTTGCAAAAAATCTCTTACATACAACGATTTCTCAAAGCTTTTTCATTAATTTGGTTAAGTTTCAGGGTAGAGTCTATTTGGCAACTGTATGAGGGCCATCCTCAAGTAGTTTACATAATGTTTTTATATTGACTTTTTTTTTGTCGGTTATATTTAATCTAGTTATATTGACTTGCTCTTATGATTTTGATTATTTCAGTGAAATTGTCTCTGCTGTTGTTTCTCTTTTCTCTTCCATGTATGTGATGAAGTGGAAAGAGTTTTTTCCTGAGAAAGAGTTTAAAGAACCACCTTATTTTGATGGACGATCAGTTTGCTATCCATCATCTGAGATTCTTCGAGATTACTTGGCTTGGAGACAAGTTGATTGTGAGTACTCCCTTTTTATTTTATTAAGAATTTCAAGCACAGTAATCAGGTTATATGAAGAAATGGGTTTTTATGACCTATTGTTCTTGCTGGCAAGTCAAAGAATGAATTGTATCATTTTAACAATCTTATGTCAATATATTGACTTGTAGGTCACATAAACAATCAGTACAATACTTGTTTCTGGCTGCTAGTTAAGTCTGGAAAGAGCAGAACTGAAGCACAAAGCTCTCTGAAGGTGTGGTATCTCATTCCTTAATTTATGGCGCAGGTCTCTTTTTTTTGATGAAGTAGCATGATCTATTATAATATGTGATTCTATGGATTATTTTGCTGTCTAAATCTTCTGGATTATCTTTTTTATGCCATGTGCACCTTGAAGAAAATAGTCTTGCAGCCTGTCGTGGTGAAGTATCAGTATACTTGTTGACATCACACATTTTGTATTTAAGGGTGTGATTTTTTCACTTATAGTTCTGATAGCCAGAAAGCTGAATGAAAATACATTTAGTTAATCTTTTCTTTAAGCTTCTTCTCGATTTTGCAGTATCCTTATTTGAGCCTAGCACATGGCAAGTACTTCAGTTTTTTGAAGGGTACAGTTAAAAATTTTGTTCAAGCTATCACTTATTTTTTGAGCACTATTCTGGGCATGTATCTCTTGGAGGAACATAGTTATAGAAATTGTGATTTTCACAAAGATGAGATTATGTTAAAAGCATAAGCCAACATACTATGTGAACTCTTAAGGCACTGAAGCCTCAATCACTAACGGTAGAGTTCTCATCCACATGATTGTGACACGTAATAGTGTAAATGAATATTTTTTTGTAATTTGATTCTGTAGAAATCGACTATGCACTTTAATTTAGACCGTCAGCGTTGATTTGACCTTGATAAAGTAATCTGTTAGTTCATATCTCTCTCATCCTGTTCTGATCATACACAAGCAGGTTTCACTATTGAGAGTAATCTTGATATTCCAATGACCACATTAACCCTTTTGTTCTGCAGGGTACTCAAACTCAAGAAAAAAATGAATTGCTTGCCAAGTTTGGCATTGATTACAATGCGTTACCAATGATC</genome_strand>
        <mrna_strand>TGGAATAACTACACATGCCTTACCGAGGAACTTGGTTCGCTCGCTGAAGGGATTAACAAGATTAAACCCGAGTATTTGAGGTCTTTCCAGTTTGAAAGCAGGTTGATGTTATCTATTTGGATTGTAGTTCGGGTAGACGGTTGTCATTTCCATAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTGAAGATAATGGCTTTCAGAAGCCAAATGATGAGCAGGCACTGAAACTTATGAACTCTTGCGCGGTGTCTTTGCTGGAGATGTTTAAGGATATTATCTTTGCATATGGAGTGAGTGATGAATACAG.............................................................................................CTTTGTTTTGAAGAAAGATTCTCTATTGTATCAGAGGTGGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTGTCTCTGCTGTTGTTTCTCTTTTCTCTTCCATGTATGTGATGAAGTGGAAAGAGTTTTTTCCTGAGAAAGAGTTTAAAGAACCACCTTATTTTGATGGACGATCAGTTTGCTATCCATCATCTGAGATTCTTCGAGATTACTTGGCTTGGAGACAAGTTGATT........................................................................................................................................................GTCACATAAACAATCAGTACAATACTTGTTTCTGGCTGCTAGTTAAGTCTGGAAAGAGCAGAACTGAAGCACAAAGCTCTCTNGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTCAAACTCAAGACAAGAATGAATTGCTTGCCAAGTTTGGCATTGATTACAATGCGTTACCAATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E319702" ref_strand="+" ref_description="SGN-E319702 [cTOB-12-E11]">
      <seq>tttagcagtttacttccattctctcaatctaagaaactggatgaatctgtggagataacccgaacagtgtttgatgcttgggaaaggcataattctgatgacatacggttctgcttattagttataattaatgcttatataacaccggtctcaacactgaagaaccttagagcaaaaggattttccactttgaactgcatggtgacaaattgcgggcctcagatattgaactgtctattagatcctaactgtagaaaggcacttcaatgcttgaacaactgcagccctgtagatcaggtatgcaattatcgctgtattgcttcctatgagagcaaatacctggaagagttctctctctgtgtgctacagaagaataattgtcttgaacttgatgcaaagattcctgaaaagccttatgtgactccaatggcagagtttcgaggggagaaattgtcttctgaaattgctgaagacctccttgttggttggttagggacattggaatggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="67161" stop="66053"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66861" g_stop="66353" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="509" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E319702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E319702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66861" e_stop="66353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAGCAGTTTACTTCCATTCTCTCAATCTAAGAAACTGGATGAATCTGTGGAGATAACCCGAACAGTGTTTGATGCTTGGGAAAGGCATAATTCTGATGACATACGGTTCTGCTTATTAGTTATAATTAATGCTTATATAACACCGGTCTCAACACTGAAGAACCTTAGAGCAAAAGGATTTTCCACTTTGAACTGCATGGTGACAAATTGCGGGCCTCAGATATTGAACTGTCTATTAGATCCTAACTGTAGAAAGGCACTTCAATGCTTGAACAACTGCAGCCCTGTAGATCAGGTATGCAATTATCGCTGTATTGCTTCCTATGAGAGCAAATACCTGGAAGAGTTCTCTCTCTGTGTGCTACAGAAGAATAATTGTCTTGAACTTGATGCAAAGATTCCTGAAAAGCCTTATGTGACTCCAATGGCAGAGTTTCGAGGGGAGAAATTGTCTTCTGAAATTGCTGAAGACCTCCTTGTTGGTTGGTTAGGGACATTGGAATGGAG</genome_strand>
        <mrna_strand>TTTAGCAGTTTACTTCCATTCTCTCAATCTAAGAAACTGGATGAATCTGTGGAGATAACCCGAACAGTGTTTGATGCTTGGGAAAGGCATAATTCTGATGACATACGGTTCTGCTTATTAGTTATAATTAATGCTTATATAACACCGGTCTCAACACTGAAGAACCTTAGAGCAAAAGGATTTTCCACTTTGAACTGCATGGTGACAAATTGCGGGCCTCAGATATTGAACTGTCTATTAGATCCTAACTGTAGAAAGGCACTTCAATGCTTGAACAACTGCAGCCCTGTAGATCAGGTATGCAATTATCGCTGTATTGCTTCCTATGAGAGCAAATACCTGGAAGAGTTCTCTCTCTGTGTGCTACAGAAGAATAATTGTCTTGAACTTGATGCAAAGATTCCTGAAAAGCCTTATGTGACTCCAATGGCAGAGTTTCGAGGGGAGAAATTGTCTTCTGAAATTGCTGAAGACCTCCTTGTTGGTTGGTTAGGGACATTGGAATGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E346281" ref_strand="+" ref_description="SGN-E346281 [cTOF-23-J11]">
      <seq>atatataataatcttaaattccggtgttgccttatttggtctttgaaaatttgatttgaagcttcaaaattcaactttcaacttttcacgttcggctttcggcggtcataaacgtctacttttttaagtagacgttcgaacctactgaagatattctagcatgctggagaaatcgcggcaaaggatttccaaaactacaaccgatggctcgagaatatattagcaatgcaagcgtcgtcagtagcttcggaaggcgtctttagtgcagcaaggtttcaacttggagaacatagacattcattagcagccgacagcttggatatatcggtattattttgagcttggattaatgccgagagaagaaatttgagtcgtgaaccaccaccgaccaaatttcaagatgacgttgatgaagtaatgttggattatagtgacgacgagattgaagtaatggaaaatctttctattcaaccaattcccgaacatgttactaaggaaatgttgaatgatttacgaagagatttatatggtggcacgaactattagtaaaagtatgataattcgagatttaattcaaacagaacccttcctagaaggtgggctgtgtaaattaaatcttttaatactctactaatatttttgtaaatgtaattgtaatatcaaataaatattaataaaaatataggctattcgccttaatttattttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="99253" stop="95753"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98953" g_stop="98828" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.849"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98827" i_stop="97733" i_length="1095">
            <donor d_prob="0.830" d_score="0.82"/>
            <acceptor a_prob="0.778" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97732" g_stop="97719" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="138" r_length="12" r_score="0.643"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97718" i_stop="96621" i_length="1098">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.617" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96620" g_stop="96053" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="708" r_length="570" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E346281" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E346281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98953" e_stop="98828"/>
          <exon e_start="97732" e_stop="97719"/>
          <exon e_start="96620" e_stop="96053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATAAT-ATCTTAAATTCCGGTGTTGCCTTACTTGGTCTTTAGAGATTAGATTTGGCGCTTCAAAATTCAATTTTCAACTTTCCGCGTTCGG-TTTGGGCGGTCATAAACGTCTACTTTTACATCGTTCCAACTTTTATTTTACATTTCATTTATATTTAAATAATTATTTATTTATTTTGTGATTTATTATTTGCATTACATTTTTCGTATTATATTTAATCTCACGTTTAATTTTTTAATATGGATTTCGGTAAAAATATTGTTCAAAAAGGAAAGGGGATAAAAAACTGCATTAGAGCGTGTAAAAAATATTTGTAACTTTACATCCTCTGATAATGCAAAAATTGGTAGTTCTTCCAAATTAAAACTAAAAAATCTACTATATTAAGAATAAATACGGATGATTATACACATGTTAATGATACGGTTTTTAATATTGATAGTAATTCAGGATTAGATCCTTATCATGAACATTTACAATGTCGCTTTGGTAATTTTGATGAGGACTTTCCTAGTGATAATGATAATGATATTGATAATTATATTGATACACCTAATTTTGATGATGATGATGATGAAACTGAGCCACTTACGACTACTAATACTCCCAGTCCTGCTCTTTGTTGTCCTGCCCCTGTTCCCCCAGTATATCCTAGGCTAAGGTAGAACGTGTTAAAAAATTAGTTGTTTTGCAATTTATGAAACAAAACAAAGATAAAACACAAGCTATTTGTAATAAATGTAAACATAGATTAAATCATAAAATTGTTGGCAAATCTGGCAGGACGGGACATTTGAGTAGTCATTTAATGTTTTGTTGTAAAAATGAATTTTTGCAAGCTAAAACGGTAGCAGAAGCTAAAAAAACGATACCCCCCTTCCTGAAAATGTAGGAGTAGGCGGCTCTAACATGGTACAAACACAATTAAATCCGTCTAATGTTTCTGGCTCTAGTTTACCACTTTCATATAGTAGAGAAAAAGATCTTGAAGAACTAGCTAAAATGATAAGTGTTATGGGTTTGCCATTTAGTTTTGCTGAAAATCCCAGTTTTATACATTATATTAAAATTATATATAATCCAAATTTTAAAGATTTTGCTAGAAATACAATTAAAAAGGCTGTATTTGATTATCATGCACAACATTTTCAATATCTTCGTTGTTTATTTTATTATAATACTTGTAAAATAGCTATTACTTCTTATATGGGTCGTAGTGTAAACGGTAACGATTATTTGACTGTTACTGCACATTGGATTGATGAAAATTGGTATATGCAAAAAAGAATTTTAGGTTATAAATGTTGTCAAATGCAAAAAACCGATAGTTATATTGCTCAAACTATTTTAGATATTTTACAAAGTTATGAAATATGTGATAAAATAAGTAGTATAACCTTAGATAATGCTTCAAGTAATAATGCTGCTATTGAATATTTAAAACCTACACGTTGTCCTTTCTATGGTGATAATTATCATATTAGGTGTAGTGCACATATATATAATTTAATGGTTAGAGATGGTGTACATATGTATGATAACAGATGTACGAAAGTTGAAAATGCATGTCATTTTATATTTAAGAGTCAAGTTAAGTCTAGGCGTTAAGATTTTCAAAATAGCTGTTTTGAAAATAATCTTCCACCTAGAAAAATTCCAAAAACAGTGGCTACTAGATGAAATACTTTATATGAAATGCTTGTAATCACTTTTGAATATCGAATAACCTTACAAATGGTTTGGAATGCTAATAATTCTGATATGACATATAGACTAGATGATAATGATTGGCGTGATATAAATAAACTTATAGATTTCCTAAAAGTTTTTTACTTAACTACAAAAAGAATATTTGTACTTTATAATGCATCAATTTGTACTGTTTTGCCTGATATTTGTATGATTTCTTCTAAATTATATAAATTTAAAAATAAACCAAGATTTCAACAAACCATTGAAAAAATGATTCTAAAATTTAAAAAATATTATATTCCTATTCCTCAAATTTATTTAACTGCATGTTTGTTAAACCCTAAGTATAAAGATTTAGGTGCATCAAGAATGGTTGAAAAAATGTATTTTAACATAGATATTAATGATGTATTAGAAGAAATTCCTAGTTGTCAACAAGTTAAAGATAGCATAAAAATTAAAGCTAGAAAATTGTATGATTTATATAATGCTAATATAAATTTATCAAGTGAAAATGAACCTAAAAGCTCTAGGGTTAAATTTGATGAAAATAATATTGATGATTATTTACAGGATTATCTTGAACTTTCTCACGATAATAGAAATGATTTTGGTGCCTATATTAATCAAAATACAGAACCTACTGAAGATATTCTCCAATGGTGGAGAAATCGCGGCAAAGAATTTCCAAAACTAGTACCGATGACTCGAG-ATATATTAGCAATGTAAGCGTCGTCGGTAGCTTTGGAAGGCGTATTTAGTGCAACAAGGTTTCAACTTGGAGAACATAGACATTCACTAGCAGCCGACAGCTTGGAGATATCGGTATTATTTCGAGATTGGATTAATGCCGAGAGAAAAAATTTGGGTCGTGAACCACTACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGTAGGATTATAGTGACGACGGGATTGAAGCAATGGAAGATCTTTCTATTCAATCAATTCCCGAACATGTTACTAAAGAAATGTTGAATGATTTACGAAGGGATTTATATGGTGGCACCAACTATTAATAAAAGTATGATAATTCGAGATTTAATTCAAACAGAACCCTTCCTAGAAGGT-GGCTGTGTAGATTAAATCTTTTAATACTCTACTAATATTTTTGTAAATGTAATTGTAATATCAAATAAATATTAATAAAAATATAGGCTATTCGCCTTAATTTGTTTTT</genome_strand>
        <mrna_strand>ATATATAATAATCTTAAATTCCGGTGTTGCCTTATTTGGTCTTTGAAAATTTGATTTGAAGCTTCAAAATTCAACTTTCAACTTTTCACGTTCGGCTTTCGGCGGTCATAAACGTCTACTTTT--TTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGAC-GT-TCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTACTGAAGATATTCTAGCATGCTGGAGAAATCGCGGCAAAGGATTTCCAAAACTACAACCGATGGCTCGAGAATATATTAGCAATGCAAGCGTCGTCAGTAGCTTCGGAAGGCGTCTTTAGTGCAGCAAGGTTTCAACTTGGAGAACATAGACATTCATTAGCAGCCGACAGCTTGGATATATCGGTATTATTTTGAGCTTGGATTAATGCCGAGAGAAGAAATTTGAGTCGTGAACCACCACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGTTGGATTATAGTGACGACGAGATTGAAGTAATGGAAAATCTTTCTATTCAACCAATTCCCGAACATGTTACTAAGGAAATGTTGAATGATTTACGAAGAGATTTATATGGTGGCACGAACTATTAGTAAAAGTATGATAATTCGAGATTTAATTCAAACAGAACCCTTCCTAGAAGGTGGGCTGTGTAAATTAAATCTTTTAATACTCTACTAATATTTTTGTAAATGTAATTGTAATATCAAATAAATATTAATAAAAATATAGGCTATTCGCCTTAATTTATTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E311944" ref_strand="+" ref_description="SGN-E311944 [cTOA-16-K15]">
      <seq>tttcacatggactaaccttccatttttgatcttcttcttctgctaaaatggtttcttcaattgtcactaaaatcccactttgcctacactcatcaaccctcaatcacaactcaaatgttgttcaacccatttccctcaaaaccctttttcttactcccctttacagtcccaaaaccctgaatactctttaccccaagctccaagcaccttccaaatcccaaaattcagctattttaacctgttcctggaaaccccagaaaggaatttccaagtttttcagtgagaagattgttgttttacttgttgggtcattcttgtttatgggtataagggctaaacgtgtattgtcattgccacaaccagttcaaggaagtagtgttgttgagacccaagaaggagatagtgaggaagaagtgatgtgtatgaagttgttggagaagaatccgagagatgttgatgctttgaagactattgttaatgtgaagatgagaaaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="111830" stop="110735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111530" g_stop="111035" g_length="496"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E311944" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111530" e_stop="111035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCACATGGACTAACCTTCCATTTTTGATCTTCTTCTTCTGCTAAAATGGTTTCTTCAATTGTCACTAAAATCCCACTTTGCCTACACTCATCAACCCTCAATCACAACTCAAATGTTGTTCAACCCATTTCCCTCAAAACCCTTTTTCTTACTCCCCTTTACAGTCCCAAAACCCTGAATACTCTTTACCCCAAGCTCCAAGCACCTTCCAAATCCCAAAATTCAGCTATTTTAACCTGTTCCTGGAAACCCCAGAAAGGAATTTCCAAGTTTTTCAGTGAGAAGATTGTTGTTTTACTTGTTGGGTCATTCTTGTTTATGGGTATAAGGGCTAAACGTGTATTGTCATTGCCACAACCAGTTCAAGGAAGTAGTGTTGTTGAGACCCAAGAAGGAGATAGTGAGGAAGAAGTGATGTGTATGAAGTTGTTGGAGAAGAATCCGAGAGATGTTGATGCTTTGAAGACTATTGTTAATGTGAAGATGAGAAAAGG</genome_strand>
        <mrna_strand>TTTCACATGGACTAACCTTCCATTTTTGATCTTCTTCTTCTGCTAAAATGGTTTCTTCAATTGTCACTAAAATCCCACTTTGCCTACACTCATCAACCCTCAATCACAACTCAAATGTTGTTCAACCCATTTCCCTCAAAACCCTTTTTCTTACTCCCCTTTACAGTCCCAAAACCCTGAATACTCTTTACCCCAAGCTCCAAGCACCTTCCAAATCCCAAAATTCAGCTATTTTAACCTGTTCCTGGAAACCCCAGAAAGGAATTTCCAAGTTTTTCAGTGAGAAGATTGTTGTTTTACTTGTTGGGTCATTCTTGTTTATGGGTATAAGGGCTAAACGTGTATTGTCATTGCCACAACCAGTTCAAGGAAGTAGTGTTGTTGAGACCCAAGAAGGAGATAGTGAGGAAGAAGTGATGTGTATGAAGTTGTTGGAGAAGAATCCGAGAGATGTTGATGCTTTGAAGACTATTGTTAATGTGAAGATGAGAAAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E274355" ref_strand="+" ref_description="SGN-E274355 [cLEN-15-L4]">
      <seq>caactttcacatggactaaccttccatttttgatcttcttcttctgctaaaatggtttcttcaattgtcactaaaatcccactttgcctacactcatcaaccctcaatcacaactcaaatgttgttcaacccatttccctcaaaaccctttttcttactcccctttacagtcccaaaaccctgaatactctttaccccaagctccaagcaccttccaaatcccaaaattcagctattttaacctgttcctggaaaccccagaaaggaatttccaagtttttcagtgagaagattgttgttttacttgttgggtcattcttgtttatgggtataagggctaaacgtgtattgtcattgccacaaccagttcaaggaagtagtgttgttgagacccaagaaggagatagtgaggaagaagtgatgtgtatgaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0243O13-zkb4B/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04HBa0243O13.1" temp_strand="-" temp_description="C04HBa0243O13.1  CU469409.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0243O13 sequenced_by:sanger upload_account_name:uk">
        <position start="111834" stop="110801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111534" g_stop="111101" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0243O13.1" gen_strand="-" ref_id="SGN-E274355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0243O13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111534" e_stop="111101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTTCACATGGACTAACCTTCCATTTTTGATCTTCTTCTTCTGCTAAAATGGTTTCTTCAATTGTCACTAAAATCCCACTTTGCCTACACTCATCAACCCTCAATCACAACTCAAATGTTGTTCAACCCATTTCCCTCAAAACCCTTTTTCTTACTCCCCTTTACAGTCCCAAAACCCTGAATACTCTTTACCCCAAGCTCCAAGCACCTTCCAAATCCCAAAATTCAGCTATTTTAACCTGTTCCTGGAAACCCCAGAAAGGAATTTCCAAGTTTTTCAGTGAGAAGATTGTTGTTTTACTTGTTGGGTCATTCTTGTTTATGGGTATAAGGGCTAAACGTGTATTGTCATTGCCACAACCAGTTCAAGGAAGTAGTGTTGTTGAGACCCAAGAAGGAGATAGTGAGGAAGAAGTGATGTGTATGAAGTT</genome_strand>
        <mrna_strand>CAACTTTCACATGGACTAACCTTCCATTTTTGATCTTCTTCTTCTGCTAAAATGGTTTCTTCAATTGTCACTAAAATCCCACTTTGCCTACACTCATCAACCCTCAATCACAACTCAAATGTTGTTCAACCCATTTCCCTCAAAACCCTTTTTCTTACTCCCCTTTACAGTCCCAAAACCCTGAATACTCTTTACCCCAAGCTCCAAGCACCTTCCAAATCCCAAAATTCAGCTATTTTAACCTGTTCCTGGAAACCCCAGAAAGGAATTTCCAAGTTTTTCAGTGAGAAGATTGTTGTTTTACTTGTTGGGTCATTCTTGTTTATGGGTATAAGGGCTAAACGTGTATTGTCATTGCCACAACCAGTTCAAGGAAGTAGTGTTGTTGAGACCCAAGAAGGAGATAGTGAGGAAGAAGTGATGTGTATGAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>28</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="29313" PGL_stop="29990"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29313" e_stop="29331"/>
            <exon e_start="29485" e_stop="29990"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.772" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29313" e_stop="29331" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.772">
            <gDNA_intron_boundary i_start="29332" i_stop="29484" i_length="153"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="29485" e_stop="29990" e_length="506"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29313" stop="29331"/>
              <exon start="29485" stop="29990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551027" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29313" stop="29331"/>
              <exon start="29485" stop="29990"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29314" stop="29331"/>
              <exon start="29485" stop="29916"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257153" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCGATGCATTTGCCATG : GTTTATAGCCGCTTTGATATGAAAAATGAGACTGCTTCTCTTTTGGAGTCACGAGCACACCAATCTTGTAAGGAGTGGTCCCTCCATTCTGACAAGGATCAGACCGATGAGCTCTTGGCTTCCATGGGGTACTTCATTGAAGCTGCTGAAGTTTACTCCTCCATTGATGCTGGGAGCAAAACACGCCAAAGTTGTGCTCAGGCATTACTTCTCTATCTTCAGATTCGGATGCCAGACTTGCACTTTATCAATCTATCTGAAACTAATGCACGGAGGGCCTTGGTCGAACAAACCCGTTTCCAAGAAGCACTAATTGTTGCTGAAGCTTATGGTCTTAACCAGCCAGGTGAATGGGCTCTAGTACTTTGGAATCAAATGCTAAGACCAGAGCTCATCGAACGGTTTATGGCTGAGTTTGTTTGTGTGCTCCCCCTTCAACCCTCAATGCTTCTTGAACTTGCTAGATTTTACAGGGCTGAAGTGGCTGCAAGGGGGGATCAGTCACA</gDNA_template>
            <first_frame> S  R  C  I  C  H   : G  L  *  P  L  *  Y  E  K  *  D  C  F  S  F  G  V  T  S  T  P  I  L  *  G  V  V  P  P  F  *  Q  G  S  D  R  *  A  L  G  F  H  G  V  L  H  *  S  C  *  S  L  L  L  H  *  C  W  E  Q  N  T  P  K  L  C  S  G  I  T  S  L  S  S  D  S  D  A  R  L  A  L  Y  Q  S  I  *  N  *  C  T  E  G  L  G  R  T  N  P  F  P  R  S  T  N  C  C  *  S  L  W  S  *  P  A  R  *  M  G  S  S  T  L  E  S  N  A  K  T  R  A  H  R  T  V  Y  G  *  V  C  L  C  A  P  P  S  T  L  N  A  S  *  T  C  *  I  L  Q  G  *  S  G  C  K  G  G  S  V  T </first_frame>
            <second_frame>  L  D  A  F  A  M  :  V  Y  S  R  F  D  M  K  N  E  T  A  S  L  L  E  S  R  A  H  Q  S  C  K  E  W  S  L  H  S  D  K  D  Q  T  D  E  L  L  A  S  M  G  Y  F  I  E  A  A  E  V  Y  S  S  I  D  A  G  S  K  T  R  Q  S  C  A  Q  A  L  L  L  Y  L  Q  I  R  M  P  D  L  H  F  I  N  L  S  E  T  N  A  R  R  A  L  V  E  Q  T  R  F  Q  E  A  L  I  V  A  E  A  Y  G  L  N  Q  P  G  E  W  A  L  V  L  W  N  Q  M  L  R  P  E  L  I  E  R  F  M  A  E  F  V  C  V  L  P  L  Q  P  S  M  L  L  E  L  A  R  F  Y  R  A  E  V  A  A  R  G  D  Q  S   </second_frame>
            <third_frame>   S  M  H  L  P  W :   F  I  A  A  L  I  *  K  M  R  L  L  L  F  W  S  H  E  H  T  N  L  V  R  S  G  P  S  I  L  T  R  I  R  P  M  S  S  W  L  P  W  G  T  S  L  K  L  L  K  F  T  P  P  L  M  L  G  A  K  H  A  K  V  V  L  R  H  Y  F  S  I  F  R  F  G  C  Q  T  C  T  L  S  I  Y  L  K  L  M  H  G  G  P  W  S  N  K  P  V  S  K  K  H  *  L  L  L  K  L  M  V  L  T  S  Q  V  N  G  L  *  Y  F  G  I  K  C  *  D  Q  S  S  S  N  G  L  W  L  S  L  F  V  C  S  P  F  N  P  Q  C  F  L  N  L  L  D  F  T  G  L  K  W  L  Q  G  G  I  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0243O13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="29314" stop="29331"/>
                    <exon start="29485" stop="29988"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LDAFAMVYSRFDMKNETASLLESRAHQSCKEWSLHSDKDQTDELLASMGYFIEAAEVYSSIDAGSKTRQSCAQALLLYLQIRMPDLHFINLSETNARRALVEQTRFQEALIVAEAYGLNQPGEWALVLWNQMLRPELIERFMAEFVCVLPLQPSMLLELARFYRAEVAARGDQS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="39446" PGL_stop="31703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39432" e_stop="39394"/>
            <exon e_start="39322" e_stop="39252"/>
            <exon e_start="37786" e_stop="37679"/>
            <exon e_start="36573" e_stop="36491"/>
            <exon e_start="36105" e_stop="36029"/>
            <exon e_start="35814" e_stop="35724"/>
            <exon e_start="34853" e_stop="34800"/>
            <exon e_start="34658" e_stop="34563"/>
            <exon e_start="34433" e_stop="34344"/>
            <exon e_start="33916" e_stop="33865"/>
            <exon e_start="32986" e_stop="32925"/>
            <exon e_start="32769" e_stop="32689"/>
            <exon e_start="32077" e_stop="31703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="0.949"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.730" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="39432" e_stop="39394" e_length="39"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="39393" i_stop="39323" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39322" e_stop="39252" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39251" i_stop="37787" i_length="1465"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37786" e_stop="37679" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="1.000">
            <gDNA_intron_boundary i_start="37678" i_stop="36574" i_length="1105"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36573" e_stop="36491" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="36490" i_stop="36106" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36105" e_stop="36029" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36028" i_stop="35815" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35814" e_stop="35724" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.654" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35723" i_stop="34854" i_length="870"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34853" e_stop="34800" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="34799" i_stop="34659" i_length="141"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34658" e_stop="34563" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.952" acc_prob="0.982">
            <gDNA_intron_boundary i_start="34562" i_stop="34434" i_length="129"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34433" e_stop="34344" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.958" acc_prob="0.972">
            <gDNA_intron_boundary i_start="34343" i_stop="33917" i_length="427"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="33916" e_stop="33865" e_length="52"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33864" i_stop="32987" i_length="878"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="32986" e_stop="32925" e_length="62"/>
          </exon>
          <intron i_serial="11" don_prob="0.975" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32924" i_stop="32770" i_length="155"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="32769" e_stop="32689" e_length="81"/>
          </exon>
          <intron i_serial="12" don_prob="0.730" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32688" i_stop="32078" i_length="611"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="32077" e_stop="31703" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39432" stop="39394"/>
              <exon start="39322" stop="39252"/>
              <exon start="37786" stop="37679"/>
              <exon start="36573" stop="36491"/>
              <exon start="36105" stop="36029"/>
              <exon start="35814" stop="35724"/>
              <exon start="34853" stop="34800"/>
              <exon start="34658" stop="34563"/>
              <exon start="34433" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32925"/>
              <exon start="32769" stop="32724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35814" stop="35724"/>
              <exon start="34853" stop="34800"/>
              <exon start="34658" stop="34563"/>
              <exon start="34433" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32925"/>
              <exon start="32769" stop="32689"/>
              <exon start="32077" stop="31801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35813" stop="35724"/>
              <exon start="34853" stop="34800"/>
              <exon start="34658" stop="34563"/>
              <exon start="34433" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34400" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32925"/>
              <exon start="32769" stop="32693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32076" stop="31703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGGCTCAAATATTCCAACTTCAACTTCCCAAGAAGTG : GTTCAAAATGGGGCCTTTTGCATTAGCTTTGGATACAAAGAATTCTTTTGCAACCTCCTCTTCTGCTACAG : ATGCATCTGGCAGAAAAATGGATAACCTTCAGATGGTACCAAAAAAGTTCTTTGCATCAATCAACAACGGAGAAGAGAAACCATTTGATTTTCTACGGATACTATTTG : AGGGTGTGATAGCAGGAGGGACCGCCGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACAATAAAGACACGGCTGCAG : GTAGCTCGTGGTGGAGGACAAATAGCCTTGAAGGGGTTGTATTCTGGGCTTCTTGGAAATCTTGCTGGAGTCCTACC : GGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTT : ACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAG : GTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCG : GGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCT : GCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTG : GTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAG : GGTTCTGCCAATCAATACAAGAGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCTAAAG : GGCATCGGGCCAAGAGTGCTTTGGATAGGCATTGGAGGATCAATATTCTTTGGTGTTCTTGAGAGAACAAAGCGATACCTTGCACAAAATCGTCCTGATAATGCAACCTCAAAGAAGGATTAGTTTCTATGGTTTTCTTGTCACTAGTTGCATGGTATTGTTAAATTGAATCTAGTTACTGTTCAGTATTACTGCCATTTGCAGAAAGTCGACTATGCTAGAAAATAAGTATCCATAGAGTTATAAAGAGATCAGCTGTCCTAGGAATTAATGTACAAATAACAAAGAGAAGTAGCATCTCTGGTGATAAAGGTCCTGTTGTGGCCAAGGGAATTTTGGATGATGGAAGAGTTTAATTTATTTTTTCAAGTCTTA</gDNA_template>
            <first_frame> K  G  S  N  I  P  T  S  T  S  Q  E  V  :  V  Q  N  G  A  F  C  I  S  F  G  Y  K  E  F  F  C  N  L  L  F  C  Y  R :   C  I  W  Q  K  N  G  *  P  S  D  G  T  K  K  V  L  C  I  N  Q  Q  R  R  R  E  T  I  *  F  S  T  D  T  I  * :   G  C  D  S  R  R  D  R  R  C  C  C  *  N  S  F  I  S  H  *  Y  N  K  D  T  A  A   : G  S  S  W  W  R  T  N  S  L  E  G  V  V  F  W  A  S  W  K  S  C  W  S  P  T  :  G  F  C  Y  F  C  W  C  I  *  T  G  K  A  E  A  V  E  D  V  S  *  K  S  *  C  C  G  P  S   : Y  C  W  C  F  R  R  H  C  S  F  L  C  P  C  S  N  *   : G  H  *  A  A  N  A  N  *  A  I  C  F  G  S  *  C  C  S  L  N  S  L  K  R  R  F  *  R  S  L  C   : G  I  W  V  I  S  T  S  R  F  T  I  *  C  H  P  V  L  Y  L  *  A  A  A  D  R  L  *  A  G   : C  K  K  G  I  E  *  S  R  E  C  S  Y  R  C  F  C  W :   C  S  N  W  S  Y  N  Y  S  S  *  C  H  *  D  E  I  N  D  S   : G  F  C  Q  S  I  Q  E  H  C  *  L  C  E  D  Y  C  C  R  R  R  A  S  S  T  S  K   : G  H  R  A  K  S  A  L  D  R  H  W  R  I  N  I  L  W  C  S  *  E  N  K  A  I  P  C  T  K  S  S  *  *  C  N  L  K  E  G  L  V  S  M  V  F  L  S  L  V  A  W  Y  C  *  I  E  S  S  Y  C  S  V  L  L  P  F  A  E  S  R  L  C  *  K  I  S  I  H  R  V  I  K  R  S  A  V  L  G  I  N  V  Q  I  T  K  R  S  S  I  S  G  D  K  G  P  V  V  A  K  G  I  L  D  D  G  R  V  *  F  I  F  S  S  L  </first_frame>
            <second_frame>  K  A  Q  I  F  Q  L  Q  L  P  K  K  W :   F  K  M  G  P  F  A  L  A  L  D  T  K  N  S  F  A  T  S  S  S  A  T   : D  A  S  G  R  K  M  D  N  L  Q  M  V  P  K  K  F  F  A  S  I  N  N  G  E  E  K  P  F  D  F  L  R  I  L  F   : E  G  V  I  A  G  G  T  A  G  V  V  V  E  T  A  L  Y  P  I  D  T  I  K  T  R  L  Q  :  V  A  R  G  G  G  Q  I  A  L  K  G  L  Y  S  G  L  L  G  N  L  A  G  V  L  P :   A  S  A  I  F  V  G  V  Y  E  P  A  K  Q  K  L  L  K  M  F  P  E  N  L  S  A  V  A  H  L  :  T  A  G  A  L  G  G  I  A  A  S  F  V  R  V  P  T  E  :  V  I  K  Q  R  M  Q  T  R  Q  F  A  S  A  P  D  A  V  R  L  I  V  S  K  E  G  F  K  G  L  Y  A  :  G  Y  G  S  F  L  L  R  D  L  P  F  D  A  I  Q  F  C  I  Y  E  Q  L  R  I  G  Y  K  L  A  :  A  K  R  E  L  N  D  P  E  N  A  V  I  G  A  F  A   : G  A  L  T  G  A  I  T  T  P  L  D  V  I  K  T  R  L  M  T  Q  :  G  S  A  N  Q  Y  K  S  I  V  D  C  V  K  T  I  V  A  E  E  G  P  P  A  L  L  K  :  G  I  G  P  R  V  L  W  I  G  I  G  G  S  I  F  F  G  V  L  E  R  T  K  R  Y  L  A  Q  N  R  P  D  N  A  T  S  K  K  D  *  F  L  W  F  S  C  H  *  L  H  G  I  V  K  L  N  L  V  T  V  Q  Y  Y  C  H  L  Q  K  V  D  Y  A  R  K  *  V  S  I  E  L  *  R  D  Q  L  S  *  E  L  M  Y  K  *  Q  R  E  V  A  S  L  V  I  K  V  L  L  W  P  R  E  F  W  M  M  E  E  F  N  L  F  F  Q  V  L </second_frame>
            <third_frame>   R  L  K  Y  S  N  F  N  F  P  R  S   : G  S  K  W  G  L  L  H  *  L  W  I  Q  R  I  L  L  Q  P  P  L  L  L  Q  :  M  H  L  A  E  K  W  I  T  F  R  W  Y  Q  K  S  S  L  H  Q  S  T  T  E  K  R  N  H  L  I  F  Y  G  Y  Y  L  :  R  V  *  *  Q  E  G  P  P  V  L  L  L  K  Q  L  Y  I  P  L  I  Q  *  R  H  G  C  R :   *  L  V  V  E  D  K  *  P  *  R  G  C  I  L  G  F  L  E  I  L  L  E  S  Y   : R  L  L  L  F  L  L  V  Y  M  N  R  Q  S  R  S  C  *  R  C  F  L  K  I  L  V  L  W  P  I  L :   L  L  V  L  *  E  A  L  Q  L  P  L  S  V  F  Q  L  R :   S  L  S  S  E  C  K  L  G  N  L  L  R  L  L  M  L  F  A  *  *  S  Q  K  K  V  L  K  V  F  M  R :   D  M  G  H  F  Y  F  E  I  Y  H  L  M  P  S  S  S  V  S  M  S  S  C  G  *  V  I  S  W  L :   Q  K  G  N  *  M  I  Q  R  M  Q  L  S  V  L  L  L  :  V  L  *  L  E  L  *  L  L  L  L  M  S  L  R  R  D  *  *  L  R :   V  L  P  I  N  T  R  A  L  L  I  V  *  R  L  L  L  Q  K  K  G  L  Q  H  F  *  R :   A  S  G  Q  E  C  F  G  *  A  L  E  D  Q  Y  S  L  V  F  L  R  E  Q  S  D  T  L  H  K  I  V  L  I  M  Q  P  Q  R  R  I  S  F  Y  G  F  L  V  T  S  C  M  V  L  L  N  *  I  *  L  L  F  S  I  T  A  I  C  R  K  S  T  M  L  E  N  K  Y  P  *  S  Y  K  E  I  S  C  P  R  N  *  C  T  N  N  K  E  K  *  H  L  W  *  *  R  S  C  C  G  Q  G  N  F  G  *  W  K  S  L  I  Y  F  F  K  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0243O13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39431" stop="39394"/>
                    <exon start="39322" stop="39252"/>
                    <exon start="37786" stop="37679"/>
                    <exon start="36573" stop="36491"/>
                    <exon start="36105" stop="36029"/>
                    <exon start="35814" stop="35724"/>
                    <exon start="34853" stop="34800"/>
                    <exon start="34658" stop="34563"/>
                    <exon start="34433" stop="34344"/>
                    <exon start="33916" stop="33865"/>
                    <exon start="32986" stop="32925"/>
                    <exon start="32769" stop="32689"/>
                    <exon start="32077" stop="31955"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1023</number_coding_nucleotides>
                  <number_encoded_amino_acids>341</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KAQIFQLQLPKKWFKMGPFALALDTKNSFATSSSATDASGRKMDNLQMVPKKFFASINNGEEKPFDFLRILFEGVIAGGTAGVVVETALYPIDTIKTRLQVARGGGQIALKGLYSGLLGNLAGVLPASAIFVGVYEPAKQKLLKMFPENLSAVAHLTAGALGGIAASFVRVPTEVIKQRMQTRQFASAPDAVRLIVSKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAKRELNDPENAVIGAFAGALTGAITTPLDVIKTRLMTQGSANQYKSIVDCVKTIVAEEGPPALLKGIGPRVLWIGIGGSIFFGVLERTKRYLAQNRPDNATSKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39446" e_stop="39394"/>
            <exon e_start="39322" e_stop="39252"/>
            <exon e_start="37786" e_stop="37679"/>
            <exon e_start="36561" e_stop="36491"/>
            <exon e_start="36105" e_stop="36029"/>
            <exon e_start="35814" e_stop="35724"/>
            <exon e_start="34853" e_stop="34800"/>
            <exon e_start="34658" e_stop="34563"/>
            <exon e_start="34433" e_stop="34344"/>
            <exon e_start="33916" e_stop="33865"/>
            <exon e_start="32986" e_stop="32925"/>
            <exon e_start="32769" e_stop="32689"/>
            <exon e_start="32077" e_stop="31703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.961" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.984" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.654" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.986" e_score="1.000"/>
          <exon-intron don_prob="0.952" acc_prob="0.982" e_score="1.000"/>
          <exon-intron don_prob="0.958" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.730" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="39446" e_stop="39394" e_length="53"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.994">
            <gDNA_intron_boundary i_start="39393" i_stop="39323" i_length="71"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39322" e_stop="39252" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="39251" i_stop="37787" i_length="1465"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="37786" e_stop="37679" e_length="108"/>
          </exon>
          <intron i_serial="3" don_prob="0.961" acc_prob="0.000">
            <gDNA_intron_boundary i_start="37678" i_stop="36562" i_length="1117"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36561" e_stop="36491" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.986">
            <gDNA_intron_boundary i_start="36490" i_stop="36106" i_length="385"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36105" e_stop="36029" e_length="77"/>
          </exon>
          <intron i_serial="5" don_prob="0.984" acc_prob="0.994">
            <gDNA_intron_boundary i_start="36028" i_stop="35815" i_length="214"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="35814" e_stop="35724" e_length="91"/>
          </exon>
          <intron i_serial="6" don_prob="0.654" acc_prob="0.996">
            <gDNA_intron_boundary i_start="35723" i_stop="34854" i_length="870"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="34853" e_stop="34800" e_length="54"/>
          </exon>
          <intron i_serial="7" don_prob="0.999" acc_prob="0.986">
            <gDNA_intron_boundary i_start="34799" i_stop="34659" i_length="141"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="34658" e_stop="34563" e_length="96"/>
          </exon>
          <intron i_serial="8" don_prob="0.952" acc_prob="0.982">
            <gDNA_intron_boundary i_start="34562" i_stop="34434" i_length="129"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="34433" e_stop="34344" e_length="90"/>
          </exon>
          <intron i_serial="9" don_prob="0.958" acc_prob="0.972">
            <gDNA_intron_boundary i_start="34343" i_stop="33917" i_length="427"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="33916" e_stop="33865" e_length="52"/>
          </exon>
          <intron i_serial="10" don_prob="0.986" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33864" i_stop="32987" i_length="878"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="32986" e_stop="32925" e_length="62"/>
          </exon>
          <intron i_serial="11" don_prob="0.975" acc_prob="0.990">
            <gDNA_intron_boundary i_start="32924" i_stop="32770" i_length="155"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="32769" e_stop="32689" e_length="81"/>
          </exon>
          <intron i_serial="12" don_prob="0.730" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32688" i_stop="32078" i_length="611"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="32077" e_stop="31703" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39446" stop="39394"/>
              <exon start="39322" stop="39252"/>
              <exon start="37786" stop="37679"/>
              <exon start="36561" stop="36491"/>
              <exon start="36105" stop="36029"/>
              <exon start="35814" stop="35724"/>
              <exon start="34853" stop="34800"/>
              <exon start="34658" stop="34563"/>
              <exon start="34433" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32925"/>
              <exon start="32769" stop="32689"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702115" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35814" stop="35724"/>
              <exon start="34853" stop="34800"/>
              <exon start="34658" stop="34563"/>
              <exon start="34433" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32925"/>
              <exon start="32769" stop="32689"/>
              <exon start="32077" stop="31801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689183" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35813" stop="35724"/>
              <exon start="34853" stop="34800"/>
              <exon start="34658" stop="34563"/>
              <exon start="34433" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32948"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34400" stop="34344"/>
              <exon start="33916" stop="33865"/>
              <exon start="32986" stop="32925"/>
              <exon start="32769" stop="32693"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32076" stop="31703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAGAAGGTAACAAAAAGGCTCAAATATTCCAACTTCAACTTCCCAAGAAGTG : GTTCAAAATGGGGCCTTTTGCATTAGCTTTGGATACAAAGAATTCTTTTGCAACCTCCTCTTCTGCTACAG : ATGCATCTGGCAGAAAAATGGATAACCTTCAGATGGTACCAAAAAAGTTCTTTGCATCAATCAACAACGGAGAAGAGAAACCATTTGATTTTCTACGGATACTATTTG : CAGGAGGGACCGCCGGTGTTGTTGTTGAAACAGCTTTATATCCCATTGATACAATAAAGACACGGCTGCAG : GTAGCTCGTGGTGGAGGACAAATAGCCTTGAAGGGGTTGTATTCTGGGCTTCTTGGAAATCTTGCTGGAGTCCTACC : GGCTTCTGCTATTTTTGTTGGTGTATATGAACCGGCAAAGCAGAAGCTGTTGAAGATGTTTCCTGAAAATCTTAGTGCTGTGGCCCATCTT : ACTGCTGGTGCTTTAGGAGGCATTGCAGCTTCCTTTGTCCGTGTTCCAACTGAG : GTCATTAAGCAGCGAATGCAAACTAGGCAATTTGCTTCGGCTCCTGATGCTGTTCGCTTAATAGTCTCAAAAGAAGGTTTTAAAGGTCTTTATGCG : GGATATGGGTCATTTCTACTTCGAGATTTACCATTTGATGCCATCCAGTTCTGTATCTATGAGCAGCTGCGGATAGGTTATAAGCTGGCT : GCAAAAAGGGAATTGAATGATCCAGAGAATGCAGTTATCGGTGCTTTTGCTG : GTGCTCTAACTGGAGCTATAACTACTCCTCTTGATGTCATTAAGACGAGATTAATGACTCAG : GGTTCTGCCAATCAATACAAGAGCATTGTTGATTGTGTGAAGACTATTGTTGCAGAAGAAGGGCCTCCAGCACTTCTAAAG : GGCATCGGGCCAAGAGTGCTTTGGATAGGCATTGGAGGATCAATATTCTTTGGTGTTCTTGAGAGAACAAAGCGATACCTTGCACAAAATCGTCCTGATAATGCAACCTCAAAGAAGGATTAGTTTCTATGGTTTTCTTGTCACTAGTTGCATGGTATTGTTAAATTGAATCTAGTTACTGTTCAGTATTACTGCCATTTGCAGAAAGTCGACTATGCTAGAAAATAAGTATCCATAGAGTTATAAAGAGATCAGCTGTCCTAGGAATTAATGTACAAATAACAAAGAGAAGTAGCATCTCTGGTGATAAAGGTCCTGTTGTGGCCAAGGGAATTTTGGATGATGGAAGAGTTTAATTTATTTTTTCAAGTCTTA</gDNA_template>
            <first_frame> A  E  G  N  K  K  A  Q  I  F  Q  L  Q  L  P  K  K  W :   F  K  M  G  P  F  A  L  A  L  D  T  K  N  S  F  A  T  S  S  S  A  T   : D  A  S  G  R  K  M  D  N  L  Q  M  V  P  K  K  F  F  A  S  I  N  N  G  E  E  K  P  F  D  F  L  R  I  L  F   : A  G  G  T  A  G  V  V  V  E  T  A  L  Y  P  I  D  T  I  K  T  R  L  Q  :  V  A  R  G  G  G  Q  I  A  L  K  G  L  Y  S  G  L  L  G  N  L  A  G  V  L  P :   A  S  A  I  F  V  G  V  Y  E  P  A  K  Q  K  L  L  K  M  F  P  E  N  L  S  A  V  A  H  L  :  T  A  G  A  L  G  G  I  A  A  S  F  V  R  V  P  T  E  :  V  I  K  Q  R  M  Q  T  R  Q  F  A  S  A  P  D  A  V  R  L  I  V  S  K  E  G  F  K  G  L  Y  A  :  G  Y  G  S  F  L  L  R  D  L  P  F  D  A  I  Q  F  C  I  Y  E  Q  L  R  I  G  Y  K  L  A  :  A  K  R  E  L  N  D  P  E  N  A  V  I  G  A  F  A   : G  A  L  T  G  A  I  T  T  P  L  D  V  I  K  T  R  L  M  T  Q  :  G  S  A  N  Q  Y  K  S  I  V  D  C  V  K  T  I  V  A  E  E  G  P  P  A  L  L  K  :  G  I  G  P  R  V  L  W  I  G  I  G  G  S  I  F  F  G  V  L  E  R  T  K  R  Y  L  A  Q  N  R  P  D  N  A  T  S  K  K  D  *  F  L  W  F  S  C  H  *  L  H  G  I  V  K  L  N  L  V  T  V  Q  Y  Y  C  H  L  Q  K  V  D  Y  A  R  K  *  V  S  I  E  L  *  R  D  Q  L  S  *  E  L  M  Y  K  *  Q  R  E  V  A  S  L  V  I  K  V  L  L  W  P  R  E  F  W  M  M  E  E  F  N  L  F  F  Q  V  L </first_frame>
            <second_frame>  Q  K  V  T  K  R  L  K  Y  S  N  F  N  F  P  R  S   : G  S  K  W  G  L  L  H  *  L  W  I  Q  R  I  L  L  Q  P  P  L  L  L  Q  :  M  H  L  A  E  K  W  I  T  F  R  W  Y  Q  K  S  S  L  H  Q  S  T  T  E  K  R  N  H  L  I  F  Y  G  Y  Y  L  :  Q  E  G  P  P  V  L  L  L  K  Q  L  Y  I  P  L  I  Q  *  R  H  G  C  R :   *  L  V  V  E  D  K  *  P  *  R  G  C  I  L  G  F  L  E  I  L  L  E  S  Y   : R  L  L  L  F  L  L  V  Y  M  N  R  Q  S  R  S  C  *  R  C  F  L  K  I  L  V  L  W  P  I  L :   L  L  V  L  *  E  A  L  Q  L  P  L  S  V  F  Q  L  R :   S  L  S  S  E  C  K  L  G  N  L  L  R  L  L  M  L  F  A  *  *  S  Q  K  K  V  L  K  V  F  M  R :   D  M  G  H  F  Y  F  E  I  Y  H  L  M  P  S  S  S  V  S  M  S  S  C  G  *  V  I  S  W  L :   Q  K  G  N  *  M  I  Q  R  M  Q  L  S  V  L  L  L  :  V  L  *  L  E  L  *  L  L  L  L  M  S  L  R  R  D  *  *  L  R :   V  L  P  I  N  T  R  A  L  L  I  V  *  R  L  L  L  Q  K  K  G  L  Q  H  F  *  R :   A  S  G  Q  E  C  F  G  *  A  L  E  D  Q  Y  S  L  V  F  L  R  E  Q  S  D  T  L  H  K  I  V  L  I  M  Q  P  Q  R  R  I  S  F  Y  G  F  L  V  T  S  C  M  V  L  L  N  *  I  *  L  L  F  S  I  T  A  I  C  R  K  S  T  M  L  E  N  K  Y  P  *  S  Y  K  E  I  S  C  P  R  N  *  C  T  N  N  K  E  K  *  H  L  W  *  *  R  S  C  C  G  Q  G  N  F  G  *  W  K  S  L  I  Y  F  F  K  S   </second_frame>
            <third_frame>   R  R  *  Q  K  G  S  N  I  P  T  S  T  S  Q  E  V  :  V  Q  N  G  A  F  C  I  S  F  G  Y  K  E  F  F  C  N  L  L  F  C  Y  R :   C  I  W  Q  K  N  G  *  P  S  D  G  T  K  K  V  L  C  I  N  Q  Q  R  R  R  E  T  I  *  F  S  T  D  T  I  C :   R  R  D  R  R  C  C  C  *  N  S  F  I  S  H  *  Y  N  K  D  T  A  A   : G  S  S  W  W  R  T  N  S  L  E  G  V  V  F  W  A  S  W  K  S  C  W  S  P  T  :  G  F  C  Y  F  C  W  C  I  *  T  G  K  A  E  A  V  E  D  V  S  *  K  S  *  C  C  G  P  S   : Y  C  W  C  F  R  R  H  C  S  F  L  C  P  C  S  N  *   : G  H  *  A  A  N  A  N  *  A  I  C  F  G  S  *  C  C  S  L  N  S  L  K  R  R  F  *  R  S  L  C   : G  I  W  V  I  S  T  S  R  F  T  I  *  C  H  P  V  L  Y  L  *  A  A  A  D  R  L  *  A  G   : C  K  K  G  I  E  *  S  R  E  C  S  Y  R  C  F  C  W :   C  S  N  W  S  Y  N  Y  S  S  *  C  H  *  D  E  I  N  D  S   : G  F  C  Q  S  I  Q  E  H  C  *  L  C  E  D  Y  C  C  R  R  R  A  S  S  T  S  K   : G  H  R  A  K  S  A  L  D  R  H  W  R  I  N  I  L  W  C  S  *  E  N  K  A  I  P  C  T  K  S  S  *  *  C  N  L  K  E  G  L  V  S  M  V  F  L  S  L  V  A  W  Y  C  *  I  E  S  S  Y  C  S  V  L  L  P  F  A  E  S  R  L  C  *  K  I  S  I  H  R  V  I  K  R  S  A  V  L  G  I  N  V  Q  I  T  K  R  S  S  I  S  G  D  K  G  P  V  V  A  K  G  I  L  D  D  G  R  V  *  F  I  F  S  S  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0243O13.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39446" stop="39394"/>
                    <exon start="39322" stop="39252"/>
                    <exon start="37786" stop="37679"/>
                    <exon start="36561" stop="36491"/>
                    <exon start="36105" stop="36029"/>
                    <exon start="35814" stop="35724"/>
                    <exon start="34853" stop="34800"/>
                    <exon start="34658" stop="34563"/>
                    <exon start="34433" stop="34344"/>
                    <exon start="33916" stop="33865"/>
                    <exon start="32986" stop="32925"/>
                    <exon start="32769" stop="32689"/>
                    <exon start="32077" stop="31955"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1026</number_coding_nucleotides>
                  <number_encoded_amino_acids>342</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AEGNKKAQIFQLQLPKKWFKMGPFALALDTKNSFATSSSATDASGRKMDNLQMVPKKFFASINNGEEKPFDFLRILFAGGTAGVVVETALYPIDTIKTRLQVARGGGQIALKGLYSGLLGNLAGVLPASAIFVGVYEPAKQKLLKMFPENLSAVAHLTAGALGGIAASFVRVPTEVIKQRMQTRQFASAPDAVRLIVSKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAKRELNDPENAVIGAFAGALTGAITTPLDVIKTRLMTQGSANQYKSIVDCVKTIVAEEGPPALLKGIGPRVLWIGIGGSIFFGVLERTKRYLAQNRPDNATSKKD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="40607" PGL_stop="43172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40607" e_stop="41023"/>
            <exon e_start="41545" e_stop="42335"/>
            <exon e_start="42700" e_stop="43172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="0.998"/>
          <exon-intron don_prob="0.983" acc_prob="0.911" e_score="0.985"/>
          <exon-only e_score="0.964"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="40607" e_stop="41023" e_length="417"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="41024" i_stop="41544" i_length="521"/>
          </intron>
          <exon e_serial="2" e_score="0.985">
            <gDNA_exon_boundary e_start="41545" e_stop="42335" e_length="791"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.911">
            <gDNA_intron_boundary i_start="42336" i_stop="42699" i_length="364"/>
          </intron>
          <exon e_serial="3" e_score="0.964">
            <gDNA_exon_boundary e_start="42700" e_stop="43172" e_length="473"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40607" stop="41023"/>
              <exon start="41545" stop="41690"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331430" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40607" stop="41008"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363253" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40609" stop="41023"/>
              <exon start="41545" stop="41930"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40609" stop="41023"/>
              <exon start="41545" stop="41763"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40610" stop="40899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40617" stop="40998"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40623" stop="40956"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E363102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40638" stop="41023"/>
              <exon start="41545" stop="41640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361754" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40642" stop="41023"/>
              <exon start="41545" stop="41747"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360353" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41683" stop="42223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E364043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41867" stop="42335"/>
              <exon start="42700" stop="43084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549464" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42000" stop="42335"/>
              <exon start="42700" stop="43172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42089" stop="42335"/>
              <exon start="42700" stop="43070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42275" stop="42335"/>
              <exon start="42700" stop="43074"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361605" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATCACCATTTTCCTATTATCACATATCGTACTGAATATAATCCAACGTAACGTATATAGAAGCTAGTGGATTAGCACTAGCAATGGCTCATATTAAGTTATTGATATGGGCATGTTGCTTAGCGCTATCGACTAGTTTTGCTTATGGTCTAGGTGTTAATTGGGGTACACAAGCTGCACAAACATTGCCCCCTTCAACAATTGTTCAAATGCTTAAAGATAACAAGATTGATAAAGTTAAATTGTTTGATTCTGATCATTGGACTGTTAAGTATTTTGCTGGTACAGGAATTGAAGTCATGCTTGGATTACCAAATAATCAATTGGAAAAATTTGCTAATGATTATGATTTTGCTAAGGAATGGGTCAAAAATAATGTTAGTGCACATTTGTATAATGGAGGTGTTGATATCAA : GTTTGTGGCAGTTGGAAATGAACCATTTTTGAAAGCATACAATGGTTCATTTTTGAAAACAACATTTCCAGCTTTACAAAATGTACAAAAAGCCCTAAATTCAGCTGGCCTTGGTGACAAAATCAAAGCTACAATCCCACAAAACGCCGACGTTTACGAGTCGGGTAATTCGGGTCCATCACAGGGCGATTTCCGATCGGACATAAGGGACCTAATGCAAAAAATTTGTCGTTTCTTTAAAGACAACAACGCCCCTTTCCTTGTAAATATTTACCCTTTCTTAAGTCTCCACGAAAACAAACACTTCCCTCTAGAATTTGCGTTTTTCGATGGTCAAACAAAGGCAGTACGTGACAATGGGATATCGTACACTAATATGTTCGATGCAAATTTGGACACATTAGTTGTATCGCTGAAAAAAGCAAGTTGTTCAGGTGTGAAAATAATAGTTGGTGAAATTGGTTGGCCAACAGATGGAGATTTATATGGAAATGTTACATTAGCCAAAAGATTTTATAGTGGATTTTTTAAGAAAATGGCTACTAAAAAAGGAACACCATTATACCCTGGATTTATTGAATATTATTTATTTAGTTTAACAGATGAAAATCAAAAAAGTATTTTACCAGGAAGTTTTGAACGTCATTGGGGTATTTTTAGATATGATGGAAAACCTAAATTCCCAATGGATATTACAGGACAAGGACATGAAACAATGCCTATTGGGGCAAAAAATGTTAAGTATTTGGAGAACAAATGGTGTGTTTTGAACAAATATGCTGAAGATATTG : GTAAACTACCATCAAGTGTACAATATGCTTGTTCAAGGTCAGATTGTACAGCAGTGGATTATGGAGGATCATGCAACAAGTTAGATGGAGATGGGAATGTATCATATGCATTCAACATGTATTTCCAAATGAATGGCCAAGATGTTGAATCTTGTGTTTTTGATGGATTGGCAAAAATTGTGGAGAAAAATGCTTCTGTTGATAGTTGCTTATTCCCTATTGGTTTGGAGAGTGTTGGAGTAAGAATTGGTGTTGATGCAATCCTTAACATTCTTGTTGGTTTCTTCCTCTTTTTGACACTTCTCTAAATAAAATAATAACAATGTCATGTATTAGAAATTTCTTTGGTTTCAAATATATAATTAATTAACATATATTTACTTACTTCGTTAAAAAATTTAGGTGTCTCATTTTGTATGTATATTTATATAACCATAAGACACTCAAGTTTTGTTGTATGGGAAGGAATAAAT</gDNA_template>
            <first_frame> K  I  T  I  F  L  L  S  H  I  V  L  N  I  I  Q  R  N  V  Y  R  S  *  W  I  S  T  S  N  G  S  Y  *  V  I  D  M  G  M  L  L  S  A  I  D  *  F  C  L  W  S  R  C  *  L  G  Y  T  S  C  T  N  I  A  P  F  N  N  C  S  N  A  *  R  *  Q  D  *  *  S  *  I  V  *  F  *  S  L  D  C  *  V  F  C  W  Y  R  N  *  S  H  A  W  I  T  K  *  S  I  G  K  I  C  *  *  L  *  F  C  *  G  M  G  Q  K  *  C  *  C  T  F  V  *  W  R  C  *  Y  Q  :  V  C  G  S  W  K  *  T  I  F  E  S  I  Q  W  F  I  F  E  N  N  I  S  S  F  T  K  C  T  K  S  P  K  F  S  W  P  W  *  Q  N  Q  S  Y  N  P  T  K  R  R  R  L  R  V  G  *  F  G  S  I  T  G  R  F  P  I  G  H  K  G  P  N  A  K  N  L  S  F  L  *  R  Q  Q  R  P  F  P  C  K  Y  L  P  F  L  K  S  P  R  K  Q  T  L  P  S  R  I  C  V  F  R  W  S  N  K  G  S  T  *  Q  W  D  I  V  H  *  Y  V  R  C  K  F  G  H  I  S  C  I  A  E  K  S  K  L  F  R  C  E  N  N  S  W  *  N  W  L  A  N  R  W  R  F  I  W  K  C  Y  I  S  Q  K  I  L  *  W  I  F  *  E  N  G  Y  *  K  R  N  T  I  I  P  W  I  Y  *  I  L  F  I  *  F  N  R  *  K  S  K  K  Y  F  T  R  K  F  *  T  S  L  G  Y  F  *  I  *  W  K  T  *  I  P  N  G  Y  Y  R  T  R  T  *  N  N  A  Y  W  G  K  K  C  *  V  F  G  E  Q  M  V  C  F  E  Q  I  C  *  R  Y  W :   *  T  T  I  K  C  T  I  C  L  F  K  V  R  L  Y  S  S  G  L  W  R  I  M  Q  Q  V  R  W  R  W  E  C  I  I  C  I  Q  H  V  F  P  N  E  W  P  R  C  *  I  L  C  F  *  W  I  G  K  N  C  G  E  K  C  F  C  *  *  L  L  I  P  Y  W  F  G  E  C  W  S  K  N  W  C  *  C  N  P  *  H  S  C  W  F  L  P  L  F  D  T  S  L  N  K  I  I  T  M  S  C  I  R  N  F  F  G  F  K  Y  I  I  N  *  H  I  F  T  Y  F  V  K  K  F  R  C  L  I  L  Y  V  Y  L  Y  N  H  K  T  L  K  F  C  C  M  G  R  N  K  </first_frame>
            <second_frame>  K  S  P  F  S  Y  Y  H  I  S  Y  *  I  *  S  N  V  T  Y  I  E  A  S  G  L  A  L  A  M  A  H  I  K  L  L  I  W  A  C  C  L  A  L  S  T  S  F  A  Y  G  L  G  V  N  W  G  T  Q  A  A  Q  T  L  P  P  S  T  I  V  Q  M  L  K  D  N  K  I  D  K  V  K  L  F  D  S  D  H  W  T  V  K  Y  F  A  G  T  G  I  E  V  M  L  G  L  P  N  N  Q  L  E  K  F  A  N  D  Y  D  F  A  K  E  W  V  K  N  N  V  S  A  H  L  Y  N  G  G  V  D  I  K :   F  V  A  V  G  N  E  P  F  L  K  A  Y  N  G  S  F  L  K  T  T  F  P  A  L  Q  N  V  Q  K  A  L  N  S  A  G  L  G  D  K  I  K  A  T  I  P  Q  N  A  D  V  Y  E  S  G  N  S  G  P  S  Q  G  D  F  R  S  D  I  R  D  L  M  Q  K  I  C  R  F  F  K  D  N  N  A  P  F  L  V  N  I  Y  P  F  L  S  L  H  E  N  K  H  F  P  L  E  F  A  F  F  D  G  Q  T  K  A  V  R  D  N  G  I  S  Y  T  N  M  F  D  A  N  L  D  T  L  V  V  S  L  K  K  A  S  C  S  G  V  K  I  I  V  G  E  I  G  W  P  T  D  G  D  L  Y  G  N  V  T  L  A  K  R  F  Y  S  G  F  F  K  K  M  A  T  K  K  G  T  P  L  Y  P  G  F  I  E  Y  Y  L  F  S  L  T  D  E  N  Q  K  S  I  L  P  G  S  F  E  R  H  W  G  I  F  R  Y  D  G  K  P  K  F  P  M  D  I  T  G  Q  G  H  E  T  M  P  I  G  A  K  N  V  K  Y  L  E  N  K  W  C  V  L  N  K  Y  A  E  D  I   : G  K  L  P  S  S  V  Q  Y  A  C  S  R  S  D  C  T  A  V  D  Y  G  G  S  C  N  K  L  D  G  D  G  N  V  S  Y  A  F  N  M  Y  F  Q  M  N  G  Q  D  V  E  S  C  V  F  D  G  L  A  K  I  V  E  K  N  A  S  V  D  S  C  L  F  P  I  G  L  E  S  V  G  V  R  I  G  V  D  A  I  L  N  I  L  V  G  F  F  L  F  L  T  L  L  *  I  K  *  *  Q  C  H  V  L  E  I  S  L  V  S  N  I  *  L  I  N  I  Y  L  L  T  S  L  K  N  L  G  V  S  F  C  M  Y  I  Y  I  T  I  R  H  S  S  F  V  V  W  E  G  I  N </second_frame>
            <third_frame>   N  H  H  F  P  I  I  T  Y  R  T  E  Y  N  P  T  *  R  I  *  K  L  V  D  *  H  *  Q  W  L  I  L  S  Y  *  Y  G  H  V  A  *  R  Y  R  L  V  L  L  M  V  *  V  L  I  G  V  H  K  L  H  K  H  C  P  L  Q  Q  L  F  K  C  L  K  I  T  R  L  I  K  L  N  C  L  I  L  I  I  G  L  L  S  I  L  L  V  Q  E  L  K  S  C  L  D  Y  Q  I  I  N  W  K  N  L  L  M  I  M  I  L  L  R  N  G  S  K  I  M  L  V  H  I  C  I  M  E  V  L  I  S   : S  L  W  Q  L  E  M  N  H  F  *  K  H  T  M  V  H  F  *  K  Q  H  F  Q  L  Y  K  M  Y  K  K  P  *  I  Q  L  A  L  V  T  K  S  K  L  Q  S  H  K  T  P  T  F  T  S  R  V  I  R  V  H  H  R  A  I  S  D  R  T  *  G  T  *  C  K  K  F  V  V  S  L  K  T  T  T  P  L  S  L  *  I  F  T  L  S  *  V  S  T  K  T  N  T  S  L  *  N  L  R  F  S  M  V  K  Q  R  Q  Y  V  T  M  G  Y  R  T  L  I  C  S  M  Q  I  W  T  H  *  L  Y  R  *  K  K  Q  V  V  Q  V  *  K  *  *  L  V  K  L  V  G  Q  Q  M  E  I  Y  M  E  M  L  H  *  P  K  D  F  I  V  D  F  L  R  K  W  L  L  K  K  E  H  H  Y  T  L  D  L  L  N  I  I  Y  L  V  *  Q  M  K  I  K  K  V  F  Y  Q  E  V  L  N  V  I  G  V  F  L  D  M  M  E  N  L  N  S  Q  W  I  L  Q  D  K  D  M  K  Q  C  L  L  G  Q  K  M  L  S  I  W  R  T  N  G  V  F  *  T  N  M  L  K  I  L  :  V  N  Y  H  Q  V  Y  N  M  L  V  Q  G  Q  I  V  Q  Q  W  I  M  E  D  H  A  T  S  *  M  E  M  G  M  Y  H  M  H  S  T  C  I  S  K  *  M  A  K  M  L  N  L  V  F  L  M  D  W  Q  K  L  W  R  K  M  L  L  L  I  V  A  Y  S  L  L  V  W  R  V  L  E  *  E  L  V  L  M  Q  S  L  T  F  L  L  V  S  S  S  F  *  H  F  S  K  *  N  N  N  N  V  M  Y  *  K  F  L  W  F  Q  I  Y  N  *  L  T  Y  I  Y  L  L  R  *  K  I  *  V  S  H  F  V  C  I  F  I  *  P  *  D  T  Q  V  L  L  Y  G  K  E  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0243O13.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40650" stop="41023"/>
                    <exon start="41545" stop="42335"/>
                    <exon start="42700" stop="43007"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1470</number_coding_nucleotides>
                  <number_encoded_amino_acids>490</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SNVTYIEASGLALAMAHIKLLIWACCLALSTSFAYGLGVNWGTQAAQTLPPSTIVQMLKDNKIDKVKLFDSDHWTVKYFAGTGIEVMLGLPNNQLEKFANDYDFAKEWVKNNVSAHLYNGGVDIKFVAVGNEPFLKAYNGSFLKTTFPALQNVQKALNSAGLGDKIKATIPQNADVYESGNSGPSQGDFRSDIRDLMQKICRFFKDNNAPFLVNIYPFLSLHENKHFPLEFAFFDGQTKAVRDNGISYTNMFDANLDTLVVSLKKASCSGVKIIVGEIGWPTDGDLYGNVTLAKRFYSGFFKKMATKKGTPLYPGFIEYYLFSLTDENQKSILPGSFERHWGIFRYDGKPKFPMDITGQGHETMPIGAKNVKYLENKWCVLNKYAEDIGKLPSSVQYACSRSDCTAVDYGGSCNKLDGDGNVSYAFNMYFQMNGQDVESCVFDGLAKIVEKNASVDSCLFPIGLESVGVRIGVDAILNILVGFFLFLTLL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="58067" PGL_stop="64805"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="58067" e_stop="58221"/>
            <exon e_start="62764" e_stop="62895"/>
            <exon e_start="62989" e_stop="63033"/>
            <exon e_start="63550" e_stop="63719"/>
            <exon e_start="63872" e_stop="63957"/>
            <exon e_start="64734" e_stop="64805"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.597" acc_prob="0.760" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.140" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.752" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.712" e_score="1.000"/>
          <exon-intron don_prob="0.967" acc_prob="0.997" e_score="0.965"/>
          <exon-only e_score="0.972"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="58067" e_stop="58221" e_length="155"/>
          </exon>
          <intron i_serial="1" don_prob="0.597" acc_prob="0.760">
            <gDNA_intron_boundary i_start="58222" i_stop="62763" i_length="4542"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="62764" e_stop="62895" e_length="132"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.140">
            <gDNA_intron_boundary i_start="62896" i_stop="62988" i_length="93"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62989" e_stop="63033" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.992" acc_prob="0.752">
            <gDNA_intron_boundary i_start="63034" i_stop="63549" i_length="516"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="63550" e_stop="63719" e_length="170"/>
          </exon>
          <intron i_serial="4" don_prob="0.888" acc_prob="0.712">
            <gDNA_intron_boundary i_start="63720" i_stop="63871" i_length="152"/>
          </intron>
          <exon e_serial="5" e_score="0.965">
            <gDNA_exon_boundary e_start="63872" e_stop="63957" e_length="86"/>
          </exon>
          <intron i_serial="5" don_prob="0.967" acc_prob="0.997">
            <gDNA_intron_boundary i_start="63958" i_stop="64733" i_length="776"/>
          </intron>
          <exon e_serial="6" e_score="0.972">
            <gDNA_exon_boundary e_start="64734" e_stop="64805" e_length="72"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="58067" stop="58221"/>
              <exon start="62764" stop="62895"/>
              <exon start="62989" stop="63033"/>
              <exon start="63550" stop="63719"/>
              <exon start="63872" stop="63957"/>
              <exon start="64734" stop="64805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E328131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGAATAACTACACATGCCTTACCGAGGAACTTGGTTCGCTCGCTGAAGGGATTAACAAGATTAAACCCGAGTATTTGAGGTCTTTCCAGTTTGAAAGCAGGTTGATGTTATCTATTTGGATTGTAGTTCGGGTAGACGGTTGTCATTTCCATAG : GTTTTGTGAAGATAATGGCTTTCAGAAGCCAAATGATGAGCAGGCACTGAAACTTATGAACTCTTGCGCGGTGTCTTTGCTGGAGATGTTTAAGGATATTATCTTTGCATATGGAGTGAGTGATGAATACAG : CTTTGTTTTGAAGAAAGATTCTCTATTGTATCAGAGGTGGTCAAG : TGAAATTGTCTCTGCTGTTGTTTCTCTTTTCTCTTCCATGTATGTGATGAAGTGGAAAGAGTTTTTTCCTGAGAAAGAGTTTAAAGAACCACCTTATTTTGATGGACGATCAGTTTGCTATCCATCATCTGAGATTCTTCGAGATTACTTGGCTTGGAGACAAGTTGATT : GTCACATAAACAATCAGTACAATACTTGTTTCTGGCTGCTAGTTAAGTCTGGAAAGAGCAGAACTGAAGCACAAAGCTCTCTGAAG : GGTACTCAAACTCAAGAAAAAAATGAATTGCTTGCCAAGTTTGGCATTGATTACAATGCGTTACCAATGATC</gDNA_template>
            <first_frame> W  N  N  Y  T  C  L  T  E  E  L  G  S  L  A  E  G  I  N  K  I  K  P  E  Y  L  R  S  F  Q  F  E  S  R  L  M  L  S  I  W  I  V  V  R  V  D  G  C  H  F  H  R :   F  C  E  D  N  G  F  Q  K  P  N  D  E  Q  A  L  K  L  M  N  S  C  A  V  S  L  L  E  M  F  K  D  I  I  F  A  Y  G  V  S  D  E  Y  S :   F  V  L  K  K  D  S  L  L  Y  Q  R  W  S  S :   E  I  V  S  A  V  V  S  L  F  S  S  M  Y  V  M  K  W  K  E  F  F  P  E  K  E  F  K  E  P  P  Y  F  D  G  R  S  V  C  Y  P  S  S  E  I  L  R  D  Y  L  A  W  R  Q  V  D   : C  H  I  N  N  Q  Y  N  T  C  F  W  L  L  V  K  S  G  K  S  R  T  E  A  Q  S  S  L  K  :  G  T  Q  T  Q  E  K  N  E  L  L  A  K  F  G  I  D  Y  N  A  L  P  M  I </first_frame>
            <second_frame>  G  I  T  T  H  A  L  P  R  N  L  V  R  S  L  K  G  L  T  R  L  N  P  S  I  *  G  L  S  S  L  K  A  G  *  C  Y  L  F  G  L  *  F  G  *  T  V  V  I  S  I   : G  F  V  K  I  M  A  F  R  S  Q  M  M  S  R  H  *  N  L  *  T  L  A  R  C  L  C  W  R  C  L  R  I  L  S  L  H  M  E  *  V  M  N  T   : A  L  F  *  R  K  I  L  Y  C  I  R  G  G  Q   : V  K  L  S  L  L  L  F  L  F  S  L  P  C  M  *  *  S  G  K  S  F  F  L  R  K  S  L  K  N  H  L  I  L  M  D  D  Q  F  A  I  H  H  L  R  F  F  E  I  T  W  L  G  D  K  L  I  :  V  T  *  T  I  S  T  I  L  V  S  G  C  *  L  S  L  E  R  A  E  L  K  H  K  A  L  *  R :   V  L  K  L  K  K  K  M  N  C  L  P  S  L  A  L  I  T  M  R  Y  Q  *   </second_frame>
            <third_frame>   E  *  L  H  M  P  Y  R  G  T  W  F  A  R  *  R  D  *  Q  D  *  T  R  V  F  E  V  F  P  V  *  K  Q  V  D  V  I  Y  L  D  C  S  S  G  R  R  L  S  F  P  *  :  V  L  *  R  *  W  L  S  E  A  K  *  *  A  G  T  E  T  Y  E  L  L  R  G  V  F  A  G  D  V  *  G  Y  Y  L  C  I  W  S  E  *  *  I  Q  :  L  C  F  E  E  R  F  S  I  V  S  E  V  V  K  :  *  N  C  L  C  C  C  F  S  F  L  F  H  V  C  D  E  V  E  R  V  F  S  *  E  R  V  *  R  T  T  L  F  *  W  T  I  S  L  L  S  I  I  *  D  S  S  R  L  L  G  L  E  T  S  *  L :   S  H  K  Q  S  V  Q  Y  L  F  L  A  A  S  *  V  W  K  E  Q  N  *  S  T  K  L  S  E   : G  Y  S  N  S  R  K  K  *  I  A  C  Q  V  W  H  *  L  Q  C  V  T  N  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0243O13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="58067" stop="58221"/>
                    <exon start="62764" stop="62895"/>
                    <exon start="62989" stop="63033"/>
                    <exon start="63550" stop="63719"/>
                    <exon start="63872" stop="63957"/>
                    <exon start="64734" stop="64805"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WNNYTCLTEELGSLAEGINKIKPEYLRSFQFESRLMLSIWIVVRVDGCHFHRFCEDNGFQKPNDEQALKLMNSCAVSLLEMFKDIIFAYGVSDEYSFVLKKDSLLYQRWSSEIVSAVVSLFSSMYVMKWKEFFPEKEFKEPPYFDGRSVCYPSSEILRDYLAWRQVDCHINNQYNTCFWLLVKSGKSRTEAQSSLKGTQTQEKNELLAKFGIDYNALPMI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="66861" PGL_stop="66353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66861" e_stop="66353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66861" e_stop="66353" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66861" stop="66353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319702" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAGCAGTTTACTTCCATTCTCTCAATCTAAGAAACTGGATGAATCTGTGGAGATAACCCGAACAGTGTTTGATGCTTGGGAAAGGCATAATTCTGATGACATACGGTTCTGCTTATTAGTTATAATTAATGCTTATATAACACCGGTCTCAACACTGAAGAACCTTAGAGCAAAAGGATTTTCCACTTTGAACTGCATGGTGACAAATTGCGGGCCTCAGATATTGAACTGTCTATTAGATCCTAACTGTAGAAAGGCACTTCAATGCTTGAACAACTGCAGCCCTGTAGATCAGGTATGCAATTATCGCTGTATTGCTTCCTATGAGAGCAAATACCTGGAAGAGTTCTCTCTCTGTGTGCTACAGAAGAATAATTGTCTTGAACTTGATGCAAAGATTCCTGAAAAGCCTTATGTGACTCCAATGGCAGAGTTTCGAGGGGAGAAATTGTCTTCTGAAATTGCTGAAGACCTCCTTGTTGGTTGGTTAGGGACATTGGAATGGAG</gDNA_template>
            <first_frame> F  S  S  L  L  P  F  S  Q  S  K  K  L  D  E  S  V  E  I  T  R  T  V  F  D  A  W  E  R  H  N  S  D  D  I  R  F  C  L  L  V  I  I  N  A  Y  I  T  P  V  S  T  L  K  N  L  R  A  K  G  F  S  T  L  N  C  M  V  T  N  C  G  P  Q  I  L  N  C  L  L  D  P  N  C  R  K  A  L  Q  C  L  N  N  C  S  P  V  D  Q  V  C  N  Y  R  C  I  A  S  Y  E  S  K  Y  L  E  E  F  S  L  C  V  L  Q  K  N  N  C  L  E  L  D  A  K  I  P  E  K  P  Y  V  T  P  M  A  E  F  R  G  E  K  L  S  S  E  I  A  E  D  L  L  V  G  W  L  G  T  L  E  W   </first_frame>
            <second_frame>  L  A  V  Y  F  H  S  L  N  L  R  N  W  M  N  L  W  R  *  P  E  Q  C  L  M  L  G  K  G  I  I  L  M  T  Y  G  S  A  Y  *  L  *  L  M  L  I  *  H  R  S  Q  H  *  R  T  L  E  Q  K  D  F  P  L  *  T  A  W  *  Q  I  A  G  L  R  Y  *  T  V  Y  *  I  L  T  V  E  R  H  F  N  A  *  T  T  A  A  L  *  I  R  Y  A  I  I  A  V  L  L  P  M  R  A  N  T  W  K  S  S  L  S  V  C  Y  R  R  I  I  V  L  N  L  M  Q  R  F  L  K  S  L  M  *  L  Q  W  Q  S  F  E  G  R  N  C  L  L  K  L  L  K  T  S  L  L  V  G  *  G  H  W  N  G  </second_frame>
            <third_frame>   *  Q  F  T  S  I  L  S  I  *  E  T  G  *  I  C  G  D  N  P  N  S  V  *  C  L  G  K  A  *  F  *  *  H  T  V  L  L  I  S  Y  N  *  C  L  Y  N  T  G  L  N  T  E  E  P  *  S  K  R  I  F  H  F  E  L  H  G  D  K  L  R  A  S  D  I  E  L  S  I  R  S  *  L  *  K  G  T  S  M  L  E  Q  L  Q  P  C  R  S  G  M  Q  L  S  L  Y  C  F  L  *  E  Q  I  P  G  R  V  L  S  L  C  A  T  E  E  *  L  S  *  T  *  C  K  D  S  *  K  A  L  C  D  S  N  G  R  V  S  R  G  E  I  V  F  *  N  C  *  R  P  P  C  W  L  V  R  D  I  G  M  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0243O13.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66861" stop="66355"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSSLLPFSQSKKLDESVEITRTVFDAWERHNSDDIRFCLLVIINAYITPVSTLKNLRAKGFSTLNCMVTNCGPQILNCLLDPNCRKALQCLNNCSPVDQVCNYRCIASYESKYLEEFSLCVLQKNNCLELDAKIPEKPYVTPMAEFRGEKLSSEIAEDLLVGWLGTLEW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="98953" PGL_stop="96053"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98953" e_stop="98828"/>
            <exon e_start="97732" e_stop="97719"/>
            <exon e_start="96620" e_stop="96053"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.830" acc_prob="0.778" e_score="0.849"/>
          <exon-intron don_prob="0.000" acc_prob="0.617" e_score="0.643"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.849">
            <gDNA_exon_boundary e_start="98953" e_stop="98828" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.830" acc_prob="0.778">
            <gDNA_intron_boundary i_start="98827" i_stop="97733" i_length="1095"/>
          </intron>
          <exon e_serial="2" e_score="0.643">
            <gDNA_exon_boundary e_start="97732" e_stop="97719" e_length="14"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.617">
            <gDNA_intron_boundary i_start="97718" i_stop="96621" i_length="1098"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="96620" e_stop="96053" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98953" stop="98828"/>
              <exon start="97732" stop="97719"/>
              <exon start="96620" stop="96053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346281" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATATAATATCTTAAATTCCGGTGTTGCCTTACTTGGTCTTTAGAGATTAGATTTGGCGCTTCAAAATTCAATTTTCAACTTTCCGCGTTCGGTTTGGGCGGTCATAAACGTCTACTTTTACATC : TGTAAACGGTAACG : AACCTACTGAAGATATTCTCCAATGGTGGAGAAATCGCGGCAAAGAATTTCCAAAACTAGTACCGATGACTCGAGATATATTAGCAATGTAAGCGTCGTCGGTAGCTTTGGAAGGCGTATTTAGTGCAACAAGGTTTCAACTTGGAGAACATAGACATTCACTAGCAGCCGACAGCTTGGAGATATCGGTATTATTTCGAGATTGGATTAATGCCGAGAGAAAAAATTTGGGTCGTGAACCACTACCGACCAAATTTCAAGATGACGTTGATGAAGTAATGTAGGATTATAGTGACGACGGGATTGAAGCAATGGAAGATCTTTCTATTCAATCAATTCCCGAACATGTTACTAAAGAAATGTTGAATGATTTACGAAGGGATTTATATGGTGGCACCAACTATTAATAAAAGTATGATAATTCGAGATTTAATTCAAACAGAACCCTTCCTAGAAGGTGGCTGTGTAGATTAAATCTTTTAATACTCTACTAATATTTTTGTAAATGTAATTGTAATATCAAATAAATATTAATAAAAATATAGGCTATTCGCCTTAATTTGTTTTT</gDNA_template>
            <first_frame> I  Y  N  I  L  N  S  G  V  A  L  L  G  L  *  R  L  D  L  A  L  Q  N  S  I  F  N  F  P  R  S  V  W  A  V  I  N  V  Y  F  Y  I  :  C  K  R  *  R :   T  Y  *  R  Y  S  P  M  V  E  K  S  R  Q  R  I  S  K  T  S  T  D  D  S  R  Y  I  S  N  V  S  V  V  G  S  F  G  R  R  I  *  C  N  K  V  S  T  W  R  T  *  T  F  T  S  S  R  Q  L  G  D  I  G  I  I  S  R  L  D  *  C  R  E  K  K  F  G  S  *  T  T  T  D  Q  I  S  R  *  R  *  *  S  N  V  G  L  *  *  R  R  D  *  S  N  G  R  S  F  Y  S  I  N  S  R  T  C  Y  *  R  N  V  E  *  F  T  K  G  F  I  W  W  H  Q  L  L  I  K  V  *  *  F  E  I  *  F  K  Q  N  P  S  *  K  V  A  V  *  I  K  S  F  N  T  L  L  I  F  L  *  M  *  L  *  Y  Q  I  N  I  N  K  N  I  G  Y  S  P  *  F  V  F </first_frame>
            <second_frame>  Y  I  I  S  *  I  P  V  L  P  Y  L  V  F  R  D  *  I  W  R  F  K  I  Q  F  S  T  F  R  V  R  F  G  R  S  *  T  S  T  F  T  S :   V  N  G  N   : E  P  T  E  D  I  L  Q  W  W  R  N  R  G  K  E  F  P  K  L  V  P  M  T  R  D  I  L  A  M  *  A  S  S  V  A  L  E  G  V  F  S  A  T  R  F  Q  L  G  E  H  R  H  S  L  A  A  D  S  L  E  I  S  V  L  F  R  D  W  I  N  A  E  R  K  N  L  G  R  E  P  L  P  T  K  F  Q  D  D  V  D  E  V  M  *  D  Y  S  D  D  G  I  E  A  M  E  D  L  S  I  Q  S  I  P  E  H  V  T  K  E  M  L  N  D  L  R  R  D  L  Y  G  G  T  N  Y  *  *  K  Y  D  N  S  R  F  N  S  N  R  T  L  P  R  R  W  L  C  R  L  N  L  L  I  L  Y  *  Y  F  C  K  C  N  C  N  I  K  *  I  L  I  K  I  *  A  I  R  L  N  L  F   </second_frame>
            <third_frame>   I  *  Y  L  K  F  R  C  C  L  T  W  S  L  E  I  R  F  G  A  S  K  F  N  F  Q  L  S  A  F  G  L  G  G  H  K  R  L  L  L  H   : L  *  T  V  T  :  N  L  L  K  I  F  S  N  G  G  E  I  A  A  K  N  F  Q  N  *  Y  R  *  L  E  I  Y  *  Q  C  K  R  R  R  *  L  W  K  A  Y  L  V  Q  Q  G  F  N  L  E  N  I  D  I  H  *  Q  P  T  A  W  R  Y  R  Y  Y  F  E  I  G  L  M  P  R  E  K  I  W  V  V  N  H  Y  R  P  N  F  K  M  T  L  M  K  *  C  R  I  I  V  T  T  G  L  K  Q  W  K  I  F  L  F  N  Q  F  P  N  M  L  L  K  K  C  *  M  I  Y  E  G  I  Y  M  V  A  P  T  I  N  K  S  M  I  I  R  D  L  I  Q  T  E  P  F  L  E  G  G  C  V  D  *  I  F  *  Y  S  T  N  I  F  V  N  V  I  V  I  S  N  K  Y  *  *  K  Y  R  L  F  A  L  I  C  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0243O13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="111534" PGL_stop="111035"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111534" e_stop="111035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="111534" e_stop="111035" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111534" stop="111101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111530" stop="111035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311944" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACTTTCACATGGACTAACCTTCCATTTTTGATCTTCTTCTTCTGCTAAAATGGTTTCTTCAATTGTCACTAAAATCCCACTTTGCCTACACTCATCAACCCTCAATCACAACTCAAATGTTGTTCAACCCATTTCCCTCAAAACCCTTTTTCTTACTCCCCTTTACAGTCCCAAAACCCTGAATACTCTTTACCCCAAGCTCCAAGCACCTTCCAAATCCCAAAATTCAGCTATTTTAACCTGTTCCTGGAAACCCCAGAAAGGAATTTCCAAGTTTTTCAGTGAGAAGATTGTTGTTTTACTTGTTGGGTCATTCTTGTTTATGGGTATAAGGGCTAAACGTGTATTGTCATTGCCACAACCAGTTCAAGGAAGTAGTGTTGTTGAGACCCAAGAAGGAGATAGTGAGGAAGAAGTGATGTGTATGAAGTTGTTGGAGAAGAATCCGAGAGATGTTGATGCTTTGAAGACTATTGTTAATGTGAAGATGAGAAAAGG</gDNA_template>
            <first_frame> Q  L  S  H  G  L  T  F  H  F  *  S  S  S  S  A  K  M  V  S  S  I  V  T  K  I  P  L  C  L  H  S  S  T  L  N  H  N  S  N  V  V  Q  P  I  S  L  K  T  L  F  L  T  P  L  Y  S  P  K  T  L  N  T  L  Y  P  K  L  Q  A  P  S  K  S  Q  N  S  A  I  L  T  C  S  W  K  P  Q  K  G  I  S  K  F  F  S  E  K  I  V  V  L  L  V  G  S  F  L  F  M  G  I  R  A  K  R  V  L  S  L  P  Q  P  V  Q  G  S  S  V  V  E  T  Q  E  G  D  S  E  E  E  V  M  C  M  K  L  L  E  K  N  P  R  D  V  D  A  L  K  T  I  V  N  V  K  M  R  K   </first_frame>
            <second_frame>  N  F  H  M  D  *  P  S  I  F  D  L  L  L  L  L  K  W  F  L  Q  L  S  L  K  S  H  F  A  Y  T  H  Q  P  S  I  T  T  Q  M  L  F  N  P  F  P  S  K  P  F  F  L  L  P  F  T  V  P  K  P  *  I  L  F  T  P  S  S  K  H  L  P  N  P  K  I  Q  L  F  *  P  V  P  G  N  P  R  K  E  F  P  S  F  S  V  R  R  L  L  F  Y  L  L  G  H  S  C  L  W  V  *  G  L  N  V  Y  C  H  C  H  N  Q  F  K  E  V  V  L  L  R  P  K  K  E  I  V  R  K  K  *  C  V  *  S  C  W  R  R  I  R  E  M  L  M  L  *  R  L  L  L  M  *  R  *  E  K  </second_frame>
            <third_frame>   T  F  T  W  T  N  L  P  F  L  I  F  F  F  C  *  N  G  F  F  N  C  H  *  N  P  T  L  P  T  L  I  N  P  Q  S  Q  L  K  C  C  S  T  H  F  P  Q  N  P  F  S  Y  S  P  L  Q  S  Q  N  P  E  Y  S  L  P  Q  A  P  S  T  F  Q  I  P  K  F  S  Y  F  N  L  F  L  E  T  P  E  R  N  F  Q  V  F  Q  *  E  D  C  C  F  T  C  W  V  I  L  V  Y  G  Y  K  G  *  T  C  I  V  I  A  T  T  S  S  R  K  *  C  C  *  D  P  R  R  R  *  *  G  R  S  D  V  Y  E  V  V  G  E  E  S  E  R  C  *  C  F  E  D  Y  C  *  C  E  D  E  K  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0243O13.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111501" stop="111037"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSSSAKMVSSIVTKIPLCLHSSTLNHNSNVVQPISLKTLFLTPLYSPKTLNTLYPKLQAPSKSQNSAILTCSWKPQKGISKFFSEKIVVLLVGSFLFMGIRAKRVLSLPQPVQGSSVVETQEGDSEEEVMCMKLLEKNPRDVDALKTIVNVKMRK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 63 chains have been computed
$ 
$ memory statistics:
$ 60656 bytes spliced alignments in total
$ 28 spliced alignments have been stored
$ 2166 bytes was the average size of a spliced alignment
$ 13824 bytes predicted gene locations in total
$ 7 predicted gene locations have been stored
$ 1974 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 74 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:34:28
-->
