<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:24:11"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322955" ref_strand="+" ref_description="SGN-U322955        Tomato 200607 #1 [7 ESTs aligned]">
      <seq>catgcttcaattttgttctagtggcaaaattatggttaaaccgcccaatacaacgcaacccatttaggtttgggttggttaatgacctgcttatgttagtctaatttattttctagagatcttgttaaatttttttgattttatactttatatattgctatagttctaaaaataatagttttattactgtccctttttagttcattttagaaaaggcaaatatattaagataacagtagttagtatagtgaagttaattttgtccttattaaatatggttcaaaaagaatgaattaaagcttagaaatttctaagaagttaaatgagagtatgatagaattttgttttttgttctttcttgatttgttaaaatggacaagtaaataggtacatctaaaagaggaaatgtagacaaattaatagaaacagagcaagtaggtactaaaaccttgtaaaataacaaagatatgaaatctactacaatttgtgcgggtttggttatgattcattattggtccagctatctaatctgttttggcccaaacaaattgggttgggttgaaataaggttcggttcatttattattttgatccgtctaaatgtaattcaatctgttcaattgccggtcttattatgattatgggcgaactaatgtctatccctaccgaaagctgttaggtttgctacgcataaagttgggacgtttataattttttctgtctttttattgtctggcctatccaattgaagaatttcgacatatatatatcttatcggtgaagaattcgtcacatttggtgtttacaataataaaccatatattttttcaatgttcacagatttgtgtctaacaataataatcatagtttggtttaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="3533" stop="2054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3233" g_stop="2358" g_length="876"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="876" r_length="876" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="877" polyA_stop="898"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-U322955" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3233" e_stop="2358"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTT-TTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAGAGTTGGGACGTTTATAATTTCTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</genome_strand>
        <mrna_strand>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATGGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAA-ATTTTTTTGATTTTATACTTTATATATTGCTATAGTTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTGTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAAAGTTGGGACGTTTATAATTTTTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335257" ref_strand="+" ref_description="SGN-U335257        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G64200.1 | Symbol: None | arginine/serine-rich splicing factor SC35, contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr5:25697792-25700858 REVERSE | Aliases: MSJ1.4, MSJ1_4 (evalue: 3e-48, score=190) genbank/nr: gi|78191396|gb|ABB29919.1| unknown [Solanum tuberosum] (evalue: 2e-63, score=247)">
      <seq>atagctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggtaactgatcacattaatatttggatggtagcctatgttgctgttgttcacactgatatttggtcacaggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactctaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaattactgaagtcgcactaggttaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccctgagaaggtgttagctgtgatcatctttaagatgaaaggaatccgcatgtagtgtagcagttgaagttgattccaggatgagatttgttatgccgagtaaagatttcgatataagatctaatctcaatgagttccaagggtagtggtttgaccataaagatcttgcagacttaattctttattcatcttaaaatgaacaaataatattaaatttcccaatcactaataccttgttctagtgtctatttgctttatggtcttgaaagtgttcttcaagtacatagcacacccccatacagtgcatgatttcatgcttatacttgtgaagttctagctgatatctgtagatctgttgttgctgttggctgattgcttatcaaactgatcctgctttttggtgttgatggtttgcttgatgtgtttaattggatcctctgcacgtgccttctgaaggagcttaagctgtgtgtttatgatgtgctgactgccatgtctcctctggtatgcaccaatctgggttctttttcatcgagatgtgtgcacattatcaatttggagatttgatcgattcctgtgagatgtttaatttatcgaacataaccttctttgattacatcttcaagtgtctggaatttgtgtccctggacagcggttaaattacctcatttaggtgttccccatacagaatttgtgtcctctcatatgagtcttgttcgtatgtgcttgttaccatattgaacaatctctttttgctaaatggctgagtttgacttgtttggagaggaagttggggaaggtaactagatataaatttggtcttttacttgttacgcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9372" stop="2976"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9072" g_stop="8940" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="212" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7731" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="428" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="500" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="501" r_stop="710" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="711" r_stop="897" r_length="187" r_score="0.995"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="1031" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4528" g_stop="3279" g_length="1250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1032" r_stop="2281" r_length="1250" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2282" polyA_stop="2298"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-U335257" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2281</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9072" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="3279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGAA</genome_strand>
        <mrna_strand>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCTAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315638" ref_strand="+" ref_description="SGN-U315638        Tomato 200607 #1 [34 ESTs aligned] arabidopsis/peptide: AT5G64200.1 | Symbol: None | arginine/serine-rich splicing factor SC35, contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr5:25697792-25700858 REVERSE | Aliases: MSJ1.4, MSJ1_4 (evalue: 2e-52, score=203) genbank/nr: gi|78191396|gb|ABB29919.1| unknown [Solanum tuberosum] (evalue: 8e-69, score=264)">
      <seq>atatagctcaaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggagcccttctccacgaagaacaactcctcccagggatgctagtccagatggacgtaatcacaaggaccggtctccaactccaaagagtatatcacctcggggtagacgtgctggttctcgcagccccttgccacgttctgatgctgatgattgaggagcaagggaggagccacagttgtaatctggctttggttgatgctgcgtatcaggacattcctaagtgaatgatactttcatctgtattctgcttgctagaactggttggccagacttatttataagttgggtcgtgaaaagtcaatgtggctgaatcacaagacgatgcagcagctgttgatgctgttatatttgctgttggttgtaattttgttgccgttcacaaactactgtttcttcgctgaatggcaaggagatgcagcagctgtagatgctgttttaacttggctgcttataatttgttgctggtgacatactactgtttgttggttgaatgcaagcagatgcagcagctgttggtgctgttttagctttgctgttgtatttttgttgctggtgacaaattacattttctatacagatgttctggattctcatgatcggtaaggataagaaaactcatgaattactgaagtcgcactaggttaatgccctttggtctgacagtcatttcgtttttgtcttaacttcatattctgccctgagaaggtgttagctgtgatcatctttaagatgaaaggaatccgcatgtagtgtagcagttgaagttgattccaggatgagatttgttatgccgagtaaagatttcgatataagatctaatctcaatgagttccaagggtagtggtttgaccataaacatcttgcagacttaattctttattcatcttaaaatgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9374" stop="3614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9074" g_stop="8940" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="214" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="294" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="361" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="433" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="643" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5168" g_stop="4982" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="644" r_stop="830" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="4910" g_stop="4777" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="831" r_stop="964" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248">
            <donor d_prob="0.868" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="4528" g_stop="3914" g_length="615"/>
          <reference_exon_boundary r_type="cDNA" r_start="965" r_stop="1579" r_length="615" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-U315638" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9074" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="4982"/>
          <exon e_start="4910" e_stop="4777"/>
          <exon e_start="4528" e_stop="3914"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGATGTAAGTTGTGGCTGTCATATACTTTTTTTTGTAGTATAAACTTGATGAAAAAACATTATTTTATTTTGCAGGATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAGGTTTAACTTCTTTTTGTTGTACTTAACCAGAACTTCTTTTGATGTTACATCTGCATTCTGGTATTATGGAATGGTTTTGTGATATTAAGATTTCAACTGTTGGTTTTTAATTACGCTTCTGTGGATTTTCTTTCTGCCTTTTTTTGTTTCTTATTGCTTTTCTGATTGAAAATATACTTGCATGGTATAATGTGATGGTATGCCTTGTTTGTAATTTACTTATGATGGGAATTATTGGCCTTCTATAGTTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</genome_strand>
        <mrna_strand>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT.......................................................................GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG........................................................................................................................................................................................................................................................TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAACATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315637" ref_strand="+" ref_description="SGN-U315637        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT5G64200.1 | Symbol: None | arginine/serine-rich splicing factor SC35, contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr5:25697792-25700858 REVERSE | Aliases: MSJ1.4, MSJ1_4 (evalue: 5e-50, score=194) genbank/nr: gi|78191396|gb|ABB29919.1| unknown [Solanum tuberosum] (evalue: 1e-65, score=252)">
      <seq>attcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaagctttagccggtacctgcactgttaggtagaaggatgcaggactggagattctaggggttttgcatttgtgcgctacaagtatcaggatgaggctcaaaaagcagtggaaaagcttgatggaagagttgtagatggtcgggaaatcatggttcgatttgcgaagtacggccctaatgctgagagaattgacaaaggtagaattttggagcctgtacaaaggccaaaagggaggtcaagaagccgcagtcctagaccaaggcatcgtgatcatagggacaaggattctagaaggagaagccgaagtagaagtagaagtagaagtaggggaaggtatgagcgtgatcagtaccgtggaagagacagagataaccgtcatcggagcagaagccgcagccctgattaccacagaggtcgtgggagaggtaaatatgatgaggacaggcgcagccgaagtcggtctcatggaagaagtgcctcccctgctcgccgtagccccagtcctcgaaggaacccttctccacaaagaacaactcctcctagggatgctagtccaaatggacgtaatcacaaggaccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9354" stop="4761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9054" g_stop="8940" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="115" r_length="115" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="194" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8183" g_stop="8145" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="233" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198">
            <donor d_prob="0.267" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="313" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="380" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213">
            <donor d_prob="0.976" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="7517" g_stop="7446" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="452" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="5470" g_stop="5261" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="662" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92">
            <donor d_prob="0.849" d_score="1.00"/>
            <acceptor a_prob="0.823" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="5168" g_stop="5061" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="770" r_length="108" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-U315637" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315637" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9054" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="8183" e_stop="8145"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
          <exon e_start="7517" e_stop="7446"/>
          <exon e_start="5470" e_stop="5261"/>
          <exon e_start="5168" e_stop="5061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAATGTAAGTCTTGTCTGATGCAAGTATTCCTTAAGTTGTGGAGATTTCCTTGTTTAAAGTTGTGATTTTCATACGTGTATTTTTTAGGTTCATCTTTATCCTATAATCTAACATGTATTTTTAGTTGCATCTTTATCCTATAAACTTATTTGTAATAACCTTTTGTTTGTGGGAGTAGAACCATGTCTGACAGACTAGGATTGTTTTTGTGATCAGTGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAGGTAAGAGCTTAATTTAATTATGCCACTTAAAGTGTTATCATGGTCATTGAGATTTCCATTAGAATATAATTGTTTGTTTTAGTGTAATCTTGGTCATTATCTTTGTTGATTTTGTAATCATGAAACATTGGGGATACTTCCTATAGGGAAATTCATGTGAATATTTGATCAGACATGCTTTCTACATCAACGGATTTTTACAAGTGAAACCAAGTGAAGTGCACCGCTTCCTTAAAGCATACAATATGTTTGTTCACTAATCAATTTACTTGTGCTTTGCGTGGTCATAGAAGATGGGGAATTTCAGACATGATCTTGTAATAAAATTGATTTTTTAATGTTATCACACACAACTTCACAACTGCCCATGTCACCAATTCTCAAATTCTATTCATTCAAGTTGTAGAAGTTAAAAATTAATTATCATACAATGAACTTTGGAGCCGAGAAAAAGAAATCTACGACGATTAGGAGAAAGATGTCCCTTCAAGTTGCCCTCTCAATCAGCTAAATAGGAGTAACTGATCAAGAAAATGCTTGTTTCTATACTCACCTTAATTGGTTTAAAACACCCTTTGCTTCTATTCTCACCCTAAGTAATCATTTGCATGTACCAGATGATAAGAATTTCACATTCTTATTTTATAAAAGTTAACAGTGGCGCGGTAGTTTTTCATTTTTTGCGCTGGAAAACTGGAAAAAAGGAGACAATATAGGAACTATTTGCATCTTGCTTGTGAAGTGGGAAATTTACACAAATATATGTTGAGTAGGTCCATCCATATACAAGATGTTATTTTTCTTTGAAGCACATACTCTATGAAAAAGCATAATATGGCATACATGAATTCAGTATTATACAAATGATCAAATTATGAGTAAAATAACTAATTTAGAGCCTGTGGATTAGCTTTTGACTTATAAGTGGCTTATTTTACCATTTTAGCTTAAAACCAAGTGGTTGTAAGCATTTTTTGAAATTATCCAAACACTCCAAACGTGCTTCAAAGTTATTTTGGCTTGAAAAAGCACTTAAAATAGGCCAATCCAAACAGGCTCTAATTCATATTCAGAGAAAGTGTATCCAAATTCAATTTTCTTTGTAAAAAGTATGGTCAAACACGACTCTCCCATTATAATATTTAATTTTTAATGGCCAAATCAGTAAACTCTCTTTCTTTCATCAGCTGTTGTAATTGAACTTGCCTTTAATAAATTTGCAGATTTCTTGATCTTCTTTTTTTGGCTAAGATTTTTCCTCTGATTGAATTGATTGATTGAGTTGATACTGATGTTATATGGTCTTCATGCTTTCAATTCCTCTGCAGTGTGTAACAACCATCTCAATGTGGTAAACTGAGTGAGGGGTAAATAGGGAAATCAGTAACATTGTTATCTTACTTTGAGCCATTAATGTTTATGATAACAATAATGTTGTGATTTTACTTGTTTCCTGCCATTAGTAAATGGATGAAAACATTTGTTATTAATTAGTTAAAGCAATTTAGATTGCCAACATCTCAAAACAACTGAGTAGGTTCACGAACATGTTTCAGTTGGATTAGATGGAGGCGCCTTTATACGTCTAGCATCGTCATCTACTGTCCGACTGGATACTAATATCAGTTTTCTGTCTTGGGATTGTGTACAGAACAAGCTATAACTCCAAAGCTTTTTGTGTGTGTGGTGGAATGTGGTGATCCCATCAAGGCATAAATGTTTGAGCTTTTGTGGATAAGCTTATTTTGGTCTAGAATGGATACGGGCATATTTTGGTTTAGAATAGATACGGGTTTATATTCTTCTTCTATAACTAATTCCTCTCCAAAAACAAGGTGGAAGTATGCACATAATATTGCTTCTCCTTTTGTGTGGTACTTGAGTTGAATGATTGCCATTTTGCTTTTTAGCTAAGAGAGGTTGAAGAGTTGTATCCACAATCTGATCTTCACCCTTTTTTGTTTGTTTATCTTAGGCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAGGTAGACCTTTTCTTGTTAATATTCTCCTTCTCATCTCTCATCCCCCATGGAGAACTATTTTTATAAGCTGTCTAACTTTTCATTTTTTATAGAAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCG</genome_strand>
        <mrna_strand>ATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG......................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG.....................................................................GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT.....................................................................................................................................................................................................................TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG............................................................................................AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAACCCTTCTCCACAAAGAACAACTCCTCCTAGGGATGCTAGTCCAAATGGACGTAATCACAAGGACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335256" ref_strand="+" ref_description="SGN-U335256        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT5G64200.1 | Symbol: None | arginine/serine-rich splicing factor SC35, contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | chr5:25697792-25700858 REVERSE | Aliases: MSJ1.4, MSJ1_4 (evalue: 4e-40, score=151) genbank/nr: gi|78191396|gb|ABB29919.1| unknown [Solanum tuberosum] (evalue: 3e-44, score=161)">
      <seq>caaaccctaaccattcattaaccttatctgtcttcactccggcgaacggcgatgtctcacttcggtagatcaggcccaccggacatcaaagacacctactctctgctcgttctcaacgttacttttcgtaccactgctgatgacttgtttcctctatttgataagtatggaaaagtagtcgatgtctttatccctagagaccgaaggactggagattctaggggttttgcatttgtgcgctacaagcatcacgatgaggctcaaaaagcatgggaaaagcttgatggaagagttgaactatggtctgtacatcatggttcgattcgcgaagtgcggccctaatgctgatagaattgacacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="9366" stop="7542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9066" g_stop="8940" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8843" g_stop="8765" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="206" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="7946" g_stop="7867" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="286" r_length="80" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69">
            <donor d_prob="0.969" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="7797" g_stop="7731" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="354" r_length="68" r_score="0.851"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-U335256" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335256" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9066" e_stop="8940"/>
          <exon e_start="8843" e_stop="8765"/>
          <exon e_start="7946" e_stop="7867"/>
          <exon e_start="7797" e_stop="7731"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTCGTAATTATCCATTCTCTTTCCCTATTTTTAGCAATTTTTTCTTCTTTTCTAGCAAAGTTGTTGAATCTGATAGTTAATTACTGTTTCCCTGTACAGGTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAGGTTCTTATCTTTCATACTTTTTTTTGCAGAAGCGTACTTTTATAGTATTGTTACTGTATATTTGGCCGAGTTTACGAAGTGGAAGTCTCTTCGGCTTTTTCAGTACCCTTATTGTTTGCATAATTGTATTTGTGATGTTAATTTGATTGCTGTGTTATTTTTTCTCCACCAACTTCGTTATATGATGCCTATATGACACATTTTATTCCAGGACGATCTAAATTGTTCGACATCTTGAAACTAATGAAATCACCATGTAATTTACTTATAACTATGATGAGTCTGAGTTTTGTATGTATTGCTACTTTTGAAAGTATAAATTCATTTGATATATTCTTTATCAAACAGACTTTTCAAATATTATCCTGATATAATATTTAATGACCATTAATATGATGCATACTTTTTGAAAACAGCCTCCTTACCACACAAAGTTAGGGGTAAGGTCTGGGTACATCCTAGTCTCTCTAGACTCTACTTTTGGGATAATACTTGTTATGTTGTTGTAATATAATACATAATTCAAATTATTATTTTAAGTTGTCTTATTTCTTCCTACATGCCTTCCCCTTGGTGAGCAGCTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAGGTATTCGTTACCATTATATAAAGAAATAGAGTGGGAAGGAAATGATTTCTCCTTTTCAAGTGTTACTTCTGATTATCTTACATTACTTATGAACCGAGATGTATGTATGATGTCTTAGTGTTATCTTGATGTGGAAATAGGCAAAGATGTAGCCATATCTGTAGTCTTAGACTGGTACGATGCTTATTTGTGCTTCAGGACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTA-GATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT</genome_strand>
        <mrna_strand>CAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC................................................................................................GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGCATCACGATGAGGCTCAAAAAGCATGGGAAAAGCTTGATG.....................................................................GAAGAGTTGAACTATGGTCTGTACATCATGGTTCGATTCGCGAAGTGCGGCCCTAATGCTGATAGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U339744" ref_strand="-" ref_description="SGN-U339744        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>gctggagatggtgcagaaagtaggtgcacacttcccgatggcgtcagaaagtgacccttccaaccaatggcaaagaagtttaggaaagtgacttgcccatataaaaggcactttcctaaacacttttcttcagtttttgcaacttgataaaaacttttcaagaactcttgcaaaggctctacaaagtaaaggcagaattattccaagaacaacagcaatatcttgagcttttcgtctagttgtttaggaatatattctcttgttcttaaactgtaaaccattcctgaatctataaaggatttggtgtgttgtgttaaaagtctaggttgtccaggtgggatagcttagtgggtagattgttttctacttaggcttgttaagcaatagaggactattgcttaacggtaagattcataactctttcttacgtttggtgtaatcgtgttttacttttgcttttgaagattagtgaaaacgattgaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="16729" stop="26655"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25867" g_stop="26354" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="485" polyA_stop="501"/>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-U339744" ref_strand="-">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U339744" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25867" e_stop="26354"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAGCCAATGACAAAGAAGTTTAGGAAAGTGACTTGCCTATACAAAAGGCACTTTCCTAAACACTTTTCTTTAGTTTTTGCAACTTGACAAACACTTTTCAAGAACTCTTGCAAAGACTAACACAAAGCATATGCAGAATCATTCCTAGGACAACAGCAACATCTGAAGCCTTTCGTCTAGTTGTCTAGGAATTTATTCTCTTGTTCTCAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGAGTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</genome_strand>
        <mrna_strand>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAA--GTGACCCTTCCAACCAATGGCAAAGAAGTTTAGGAAAGTGACTTGCCCATATAAAAGGCACTTTCCTAAACACTTTTCTTCAGTTTTTGCAACTTGATAAAAACTTTTCAAGAACTCTTGCAAAGGCT-CTACAAAGTAAAGGCAGAATTATTCCAAGAACAACAGCAATATCTTGAGCTTTTCGTCTAGTTGTTTAGGAATATATTCTCTTGTTCTTAAACTGTAAACCATTCCTGAATCTATAAAGGATTTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGATTG-TTTTCTACTTAGGCTTGTTAAGCAATAGAGGACTATTGCTTAACGGTAAGATTCATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTTACTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331424" ref_strand="+" ref_description="SGN-U331424        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G08850.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr4:5636486-5640633 REVERSE | Aliases: T32A17.160, T32A17_160 (evalue: 6e-59, score=224) genbank/nr: gi|3894387|gb|AAC78593.1| Hcr2-0B [Lycopersicon esculentum](evalue: 1e-77, score=292)">
      <seq>cttttaattattagcaaatgatgatagttcccacaatttttaatttccttcagtgtattacattcttatatcttttcgcggttacatttgctaccactgaggaagcaactgctcttctaaaatggaaagcaactttccaaaaccagaacaattctttattggcttcgtggacgctaagtggacctgctggtaccaatagcattggagcggcgagttctaatgcatgcgaggactggtatggagttacatgttctaacggtagggtatacatgttgaatatgacaaatgctggtatcaatggcacactgtatgattttccattttcatcactcccttttcttggttatcttgatcttagcatcaacaacttctctggcactatcccacctgaaataggaaagctcactaatcttggctatcttgacttgtccttcaatcagatttcgggcataatcccaccacaaatcggctcattaacaaagcttgagaccctccacatctttaacagccaattatatggttccattccggaggaaataggtcacctaaggtctttgactgagctagctttgaattctaactctcttagtggttcaattcctgcttcattggggactttggacaaattgtcttatttgcatctgtatgagaaccatctttctggttccattccagcagaaatagggaaacttgtcaatctccttcaactttttcttgattcaaacaagttaactggtcatattcctccaaaaattggaaaacttgtcaatctccttcaacttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="26736" stop="28120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27036" g_stop="27820" g_length="785"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="785" r_length="785" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-U331424" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27036" e_stop="27820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTT</genome_strand>
        <mrna_strand>CTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGCGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAAAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340366" ref_strand="+" ref_description="SGN-U340366        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT1G17230.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560 | chr1:5891317-5894848 FORWARD | Aliases: F20D23.7, F20D23_7 (evalue: 9e-19, score=90.9) genbank/nr: Tyrosine(evalue: 4e-22, score=103)">
      <seq>cttgagcaactgctccagtttcaaaagggttcgcttcaataacaacagctttactgggaatttctctgaaagcttttggcatccatcccgagctgatgttcattgatttgagcgacaatgattttcaatggcgaactcagcagcaactgggggaaatacaagaatttgactactttttggatagccagaaataacattagcggtagcataccaccagagattggaaacatcaaaggtcttttgggacttgatctttcaacaaatcatttggttgggcaaataccagaggaatttggaaaattaacctctctggttgagctctcattgaaaaacaaccaaatttctggcaatatacctcaggaacttgggtcactgacaaagttagagntcccttgatctatcagacaatagattgaatgggtcgatcccaaagtttataggagattaccagcacctgattcacttgaacctgagcaacaacaaatttggccaaaaaattccaaaggagaatagggggtataattcaactttaatgtacttgatttgagccataatctnntctggttggggaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="27775" stop="37496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28075" g_stop="28640" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-U340366" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340366" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28075" e_stop="28640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTATCTG-AAGCTTTTGGCATCCATCCCGAGCTGAAGTTCATTGATTTGAGCGACAATGATTTTC-ATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAGCAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAATTTAGA-CTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAG-ATA-GGGGTATAACTCATC-TTAATGTACTTGATTTGAGCCATAATCT--TCTGGTTGGAGAAAT</genome_strand>
        <mrna_strand>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTCTCTGAAAGCTTTTGGCATCCATCCCGAGCTGATGTTCATTGATTTGAGCGACAATGATTTTCAATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAACAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAAGTTAGAGNTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAAAGTTTATAGGAGATTACCAGCACCTGATTCACTTGAACCTGAGCAACAACAAATTTGGCCAAAAAATTCCAAAGGAGAATAGGGGGTATAATTCAACTTTAATGTACTTGATTTGAGCCATAATCTNNTCTGGTTGGGGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329457" ref_strand="+" ref_description="SGN-U329457        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>gataagacgatagattcaagttctatctcaccaaaagggtaagacatcaattagagttttgatacaccgtgattgggttcaagttccatagaattatggcgtaacacgccttacatgggtaagacattgagtttgatccaatgcataaaatgatgactaagaaaaataatatatttttgatgaaatgtctttaaattcatcatattgaatttgctccatttcttgaaaagaatatggtagcaacatgtgataactctgaaatccacctgttgacttgctccattcaatcatatgaatgtggtagcagtgaatgattagtttgaaagatgacaaataattaatgatatagaataagggagtggagggaaagaattataatagtcatcattgtggtaatgataaaaggaagaacactatgagttcttcaaatagtccttcaaaatgtgaagacaacttttattatgaaaatggtatgaaaagtcattagacttgtgaatgttgtcaacccaataacttgacaagtttataaatcctctatcatgatataagaagataaagtgatggtacactttatctttcaaagtgatgttgaggtgtgtcatggaaatatgatgaattttaaagtcatgacaatgtgcttataatgcaaatttataaagtacatatgaataattagtccaatctttgaagagaatgtgacttgtaatgagtatcgtgaatgctcgaccattctataagagaatgggtccagatgtgataaaatcattatgggttggatatatgtcacaactcacctctatagaaggttttgaaaaaaaaaaaaaaaaaactcggactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="-" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="32312" stop="15203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32012" g_stop="31157" g_length="856"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="844" r_length="844" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="-" ref_id="SGN-U329457" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>856</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U329457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32012" e_stop="31157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACTGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTCTAGCCAATGCACCATAGCGATGATAAAATAATGACTAAGAAAAATAATATATTTTTGATGAAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATAT-GAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCATTCTATAAGAGAATTGGTCCAGATGTGATAAAATCATTATATGTTGGATATATGCCACAACTCACCTCTATGGAAGGTTTGAGAAAAATGATATATGTCATTTCTCATCTCTACGG</genome_strand>
        <mrna_strand>GATAAGACGATAGATTCAAGTTCTATCTCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATACACCGTGATTGGGTTCAAGTTCCATAGAATTATGGCGTAACACGCCTTACATGGGTAAGACATTGAGTT-T-G---AT-C-CAAT-GC----ATAAAATGATGACTAAGAAAAATAATATATTTTTGATGAAATGTCTTTAAATTCATCATATTGAATTTGCTCCATTTCTTGAAAAGAATATGGTAGCAACATGTGATAACTCTGAAATCCACCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTTTGAAAGATGACAAATAATTAATGATATAGAATAAGGGAGTGGAGGGAAAGAATTATAATAGTCATCATTGTGGTAATGATAAAAGGAAGAACACTATGAGTTCTTCAAATAGTCCTTCAAAATGTGAAGACAACTTTTATTATGAAAATGGTATGAAAAGTCATTAGACTTGTGAATGTTGTCAACCCAATAACTTGACAAGTTTATAAATCCTCTATCATGATATAAGAAGATAAAGTGATGGTACACTTTATCTTTCAAAGTGATGTTGAGGTGTGTCATGGAAATATGATGAATTTTAAAGTCATGACAATGTGCTTATAATGCAAATTTATAAAGTACATATGAATAATTAGTCCAATCTTTGAAGAGAATGTGACTTGTAATGAGTATCGTGAATGCTCGACCATTCTATAAGAGAATGGGTCCAGATGTGATAAAATCATTATGGGTTGGATATATGTCACAACTCACCTCTATAGAAGGTTT-TGAAAAAAAAAAAAAAAAAACTCGGACTAGTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344322" ref_strand="+" ref_description="SGN-U344322        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G08850.1 | Symbol: None | leucine-rich repeat family protein / protein kinase family protein, contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain | chr4:5636486-5640633 REVERSE | Aliases: T32A17.160, T32A17_160 (evalue: 1e-69, score=166) genbank/nr: gi|30680877|ref|NP_849538.1| receptor protein kinase-related protein [Arabidopsis thaliana](evalue: 9e-68, score=166)">
      <seq>tcatcctcatcactgtacttcctattctgggagcattagtgctgctttgtgctttcgctggttctctctttatgtgtgaccaaagaagaagagttggagacgttgaaagaagggatggtgatggttggctttcgatatccatgttagatgggaaggcattgtacagggacatcttaaatgccacagaagagttcgatgcaaaattttgcattgggcaaggaggtcagggaagtgtttacaaggtaaaccttccattattaggagatatagctgtgaagagacttcattcttcatttcagaatacacatcccaaaagcttcataaatgaagtaagggcattgactgggattaagcaccggaacattgtgagcctctacggctattgttcgaaagcacaacactcactcttggtttacgagtatgtggagaggggggagtttgtctagtgttttaagcaatgaagttgagtctaagaaattggattggcttaaaagggtgaatatcatcaagggtgttgcttttgctttatcttacatgcaccaggattgttcaccacccattgttcatcgagacatacgtagcagtaatgttttgcttgattctgagtatgaagctcgtgttgcagactttggaatagcaaagattctcaatccagactcgtccaattgcaccgcgcttgcaggcacatatggttatgtcgcacctgagcttgcatatacaatgaaagttacacaaatgtgtgatgtgtatagctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="37189" stop="38646"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37489" g_stop="38193" g_length="705"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="706" r_length="706" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38194" i_stop="38294" i_length="101">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.695" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38295" g_stop="38346" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="707" r_stop="758" r_length="52" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-U344322" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U344322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37489" e_stop="38193"/>
          <exon e_start="38295" e_stop="38346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGA-GGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTGGTAAGTTTTAAATAGTTGATGAACTATATCCAAGCACTCCATTGTTTTCTTAATCTCATTTGATTGTTAGTATTGTTGTTGAAAATTGTATTATCATTCAGAGCTTGCATATACAATGAAGGTTACACAAATGTGTGATGTGTATAGCTTTGG</genome_strand>
        <mrna_strand>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGAGGGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTG.....................................................................................................AGCTTGCATATACAATGAAAGTTACACAAATGTGTGATGTGTATAGCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U313907" ref_strand="+" ref_description="SGN-U313907        Tomato 200607 #1 [60 ESTs aligned] arabidopsis/peptide: | Symbol: None | annexin 1 (ANN1), identical to annexin (AnnAt1) (Arabidopsis thaliana) GI:4959106 | chr1:13226481-13228407 FORWARD | Aliases: F14D7.2, F14D7_2(evalue: 2e-119, score=425) genbank/nr: gi|3378208|gb|AAC97494.1| annexin p34 [Lycopersicon esculentum](evalue: 6e-175, score=616)">
      <seq>agggcgattggcggccaatcggccgaattggactccctactcatcaccctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttggctaaggaagctactaagagatggacaaaaagcaactttgttcttgtggagatagcttgtaccagatctcctaaagaactggttttggcaagagaagcttatcatgctcgtaacaagaaatctctcgaagaggacgttgcttatcacactactggggatcaccgcaagcttttggtacctcttgtgagctcctaccgatatgggggagatgaggtggacttgcgacttgctaaagcagaatctaaagtgctgcatgagaagatctccgataaggcttacagtgacgatgaggtcattagaattttagccacaaggagcaaagcgcaactcaatgctactttgaatcattacaaagatgaatatggtgaggatatcctaaagcaattagaagatgaggatgagtttgttgcactgttaagggccaccataaaaggtcttgtctaccccgagcactatttcgtggaggttcttcgtgatgcaattaacaggagaggaacagaggaagatcatctaacccgagttatcgctacaagggctgaggtcgatctgaagactatcgctaacgagtaccagaagagggatagcgttcctctgggtcgcgccattgccaaagatacaggaggagattatgagaatatgctggtggctttacttggacaagaggaataagaagcggattggctcacttctgttttataatgaccagaataaatatgccattctcccatatatttcagagttggcatgtgtttgatgattgagtgtggtctgtttcacatgagcttttagtccttttcttcttgtgagaaactttgaatatgaatctttgtgctgtctaaaaatgttctctaatgatttgcatccactaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51828" stop="54696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52135" g_stop="52284" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="183" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="52631" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="329" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="53014" g_stop="53232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="548" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="53578" g_stop="53790" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="549" r_stop="761" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="53901" g_stop="54398" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="762" r_stop="1256" r_length="495" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-U313907" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1226</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U313907" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52135" e_stop="52284"/>
          <exon e_start="52486" e_stop="52631"/>
          <exon e_start="53014" e_stop="53232"/>
          <exon e_start="53578" e_stop="53790"/>
          <exon e_start="53901" e_stop="54398"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAGGTATATCATTCAAAGCATTCTAATTGCAAGTAGTCTCATTTGTAGCTCTGTATCCGAGTCCTTAACAATAATTCATTAAGTTGTTGTCAAATTAAATGAGGTTTGAATGGTGCCCATGAAGCATTTGCTCTGTTTTTGGAGATCTAAAGACATATAATCGACAAAGTACAACTTTTTAATCTATAGTTCTTGTTATCGTAACATATTCTCAAGGCAAGAATGTCTTTGTGCCACATTGCAATGTAGGGTATATCTAATGTTCATTGAACTCCATGTTTGTTTGGATGAATACTGACAGTGAATTAACTTTGTGTATTGATCATTTAAGTTTCCAACTTCTTACAGCTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAGGTACAGATTCATCCGTTGCTCCATTTCTTTCAGTCATACGCCTTTCTACTGTAGGACTGGCTTTCTATTTCTGCTATATTGAATTATTGAGTTCTTTTGTCAATGTGCAGCAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATC</genome_strand>
        <mrna_strand>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG..............................................................................................................................................................................................................................................................................................................................................................................................AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG.........................................................................................................................................................................................................................................................................................................................................................CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG..............................................................................................................CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGAC-A-A-GAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U334665" ref_strand="+" ref_description="SGN-U334665        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | annexin 2 (ANN2), identical to annexin (AnnAt2) (Arabidopsis thaliana) GI:4959108 | chr5:25991047-25992952 FORWARD | Aliases: MXK3.27, MXK3_27(evalue: 1e-23, score=107) genbank/nr: gi|3378208|gb|AAC97494.1| annexin p34 [Lycopersicon esculentum](evalue: 4e-35, score=151)">
      <seq>ctgcattttcgagtcttgacaatcatatcctcctcctgcccacacagagaagaagaaaaatggcaagtcttacagttccggcagaagttccttcagtcgctgaagactgtgaacaactccgatctgccttcaaaggatggggaacgaatgagaagttgattatatcaattttggctcatagaaatgcggctcaacgcaaattgattcgacagacttatgctgagacttttggggaagatctgcttaaagagttggacagagaacttactcatgattttgaggtcattttcataattacagaataatttttgaattcttagttgattatttgagtttctgagttactctgtgtgatcaaaggcagatctatgatgtaaaatatatatacacattatccgtatagtaaaaccatgctaattctgaacccgatactctagatcatggattcaacttcgattttatcagagacagatctatgaaaaatatgtattagtatgtcaaaatatgaaaatgtgtacatatataataaaatcatacgtgttttgaattcactgactcgagatcctggatttgccttttgactttttgatcgtatgtgaactttgatcagaaatgataaccaacacttgtacttgtgttttctcttgaatgtttctcgcagaaattggtggtagtatggacactggatcctgcagaacgtgatgcctatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0255I02-m8c3I/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0255I02.1" temp_strand="+" temp_description="C04HBa0255I02.1  CU326399.2 htgs_phase:3 submitted_to_sgn_as:C04HBa0255I02 sequenced_by:sanger upload_account_name:uk">
        <position start="51850" stop="53364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52150" g_stop="52284" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="52486" g_stop="53064" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="712" r_length="577" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0255I02.1" gen_strand="+" ref_id="SGN-U334665" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0255I02.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U334665" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52150" e_stop="52284"/>
          <exon e_start="52486" e_stop="53064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAGGTATTGAAGTCAACTTATAATACCATTAAATCTCTCAACAACGAATATACAGATTCACTACTTTGATTTTTCTAGCATATTCTAAATTCTGTTTACTATCTTTTGCGATTATAGAGATCTTATATTTTTTTAGATTGATCGGTGATGTTAACATCAAAATTGATTGAAGTTTTAACTTCTGGAATGATTTGATTGTTACAGGATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</genome_strand>
        <mrna_strand>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG.........................................................................................................................................................................................................GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGT-AAA-ATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>12</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="3233" PGL_stop="2358"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3233" e_stop="2358"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="3233" e_stop="2358" e_length="876"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3233" stop="2358"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322955" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CATGCTTCAATTTTGTTCTAGTGGCAAAATTATAGTTAAACCGCCCAATACAACGCAACCCATTTAGGTTTGGGTTGGTTAATGACCTGCTTATGTTAGTCTAATTTATTTTCTAGAGATCTTGTTAATTTTTTTTTGATTTTATACTTTATATATTGCTATAATTCTAAAAATAATAGTTTTATTACTGTCCCTTTTTAGTTCATTTTAGAAAAGGCAAATATATTAAGATAACAGTAGTTAGTATAGTGAAGTTAATTTTGTCCTTATTAAATATGGTTCAAAAAGAATGAATTAAAGCTTAGAAATTTCTAAGAAGTTAAATGAGAGTATGATAGAATTTTTTTTTTGTTCTTTCTTGATTTGTTAAAATGGACAAGTAAATAGGTACATCTAAAAGAGGAAATGTAGACAAATTAATAGAAACAGAGCAAGTAGGTACTAAAACCTTGTAAAATAACAAAGATATGAAATCTACTACAATTTGTGCGGGTTTGGTTATGATTCATTATTGGTCCAGCTATCTAATCTGTTTTGGCCCAAACAAATTGGGTTGGGTTGAAATAAGGTTCGGTTCATTTATTATTTTGATCCGTCTAAATGTAATTCAATCTGTTCAATTGCCGGTCTTATTATGATTATGGGCGAACTAATGTCTATCCCTACCGAAAGCTGTTAGGTTTGCTACGCATAGAGTTGGGACGTTTATAATTTCTTCTGTCTTTTTATTGTCTGGCCTATCCAATTGAAGAATTTCGACATATATATATCTTATCGGTGAAGAATTCGTCACATTTGGTGTTTACAATAATAAACCATATATTTTTTCAATGTTCACAGATTTGTGTCTAACAATAATAATCATAGTTTGGTTTA</gDNA_template>
            <first_frame> H  A  S  I  L  F  *  W  Q  N  Y  S  *  T  A  Q  Y  N  A  T  H  L  G  L  G  W  L  M  T  C  L  C  *  S  N  L  F  S  R  D  L  V  N  F  F  L  I  L  Y  F  I  Y  C  Y  N  S  K  N  N  S  F  I  T  V  P  F  *  F  I  L  E  K  A  N  I  L  R  *  Q  *  L  V  *  *  S  *  F  C  P  Y  *  I  W  F  K  K  N  E  L  K  L  R  N  F  *  E  V  K  *  E  Y  D  R  I  F  F  L  F  F  L  D  L  L  K  W  T  S  K  *  V  H  L  K  E  E  M  *  T  N  *  *  K  Q  S  K  *  V  L  K  P  C  K  I  T  K  I  *  N  L  L  Q  F  V  R  V  W  L  *  F  I  I  G  P  A  I  *  S  V  L  A  Q  T  N  W  V  G  L  K  *  G  S  V  H  L  L  F  *  S  V  *  M  *  F  N  L  F  N  C  R  S  Y  Y  D  Y  G  R  T  N  V  Y  P  Y  R  K  L  L  G  L  L  R  I  E  L  G  R  L  *  F  L  L  S  F  Y  C  L  A  Y  P  I  E  E  F  R  H  I  Y  I  L  S  V  K  N  S  S  H  L  V  F  T  I  I  N  H  I  F  F  Q  C  S  Q  I  C  V  *  Q  *  *  S  *  F  G  L </first_frame>
            <second_frame>  M  L  Q  F  C  S  S  G  K  I  I  V  K  P  P  N  T  T  Q  P  I  *  V  W  V  G  *  *  P  A  Y  V  S  L  I  Y  F  L  E  I  L  L  I  F  F  *  F  Y  T  L  Y  I  A  I  I  L  K  I  I  V  L  L  L  S  L  F  S  S  F  *  K  R  Q  I  Y  *  D  N  S  S  *  Y  S  E  V  N  F  V  L  I  K  Y  G  S  K  R  M  N  *  S  L  E  I  S  K  K  L  N  E  S  M  I  E  F  F  F  C  S  F  L  I  C  *  N  G  Q  V  N  R  Y  I  *  K  R  K  C  R  Q  I  N  R  N  R  A  S  R  Y  *  N  L  V  K  *  Q  R  Y  E  I  Y  Y  N  L  C  G  F  G  Y  D  S  L  L  V  Q  L  S  N  L  F  W  P  K  Q  I  G  L  G  *  N  K  V  R  F  I  Y  Y  F  D  P  S  K  C  N  S  I  C  S  I  A  G  L  I  M  I  M  G  E  L  M  S  I  P  T  E  S  C  *  V  C  Y  A  *  S  W  D  V  Y  N  F  F  C  L  F  I  V  W  P  I  Q  L  K  N  F  D  I  Y  I  S  Y  R  *  R  I  R  H  I  W  C  L  Q  *  *  T  I  Y  F  F  N  V  H  R  F  V  S  N  N  N  N  H  S  L  V   </second_frame>
            <third_frame>   C  F  N  F  V  L  V  A  K  L  *  L  N  R  P  I  Q  R  N  P  F  R  F  G  L  V  N  D  L  L  M  L  V  *  F  I  F  *  R  S  C  *  F  F  F  D  F  I  L  Y  I  L  L  *  F  *  K  *  *  F  Y  Y  C  P  F  L  V  H  F  R  K  G  K  Y  I  K  I  T  V  V  S  I  V  K  L  I  L  S  L  L  N  M  V  Q  K  E  *  I  K  A  *  K  F  L  R  S  *  M  R  V  *  *  N  F  F  F  V  L  S  *  F  V  K  M  D  K  *  I  G  T  S  K  R  G  N  V  D  K  L  I  E  T  E  Q  V  G  T  K  T  L  *  N  N  K  D  M  K  S  T  T  I  C  A  G  L  V  M  I  H  Y  W  S  S  Y  L  I  C  F  G  P  N  K  L  G  W  V  E  I  R  F  G  S  F  I  I  L  I  R  L  N  V  I  Q  S  V  Q  L  P  V  L  L  *  L  W  A  N  *  C  L  S  L  P  K  A  V  R  F  A  T  H  R  V  G  T  F  I  I  S  S  V  F  L  L  S  G  L  S  N  *  R  I  S  T  Y  I  Y  L  I  G  E  E  F  V  T  F  G  V  Y  N  N  K  P  Y  I  F  S  M  F  T  D  L  C  L  T  I  I  I  I  V  W  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="9074" PGL_stop="3279"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9074" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="3914"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9074" e_stop="8940" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="3" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="6" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="9" e_score="0.998">
            <gDNA_exon_boundary e_start="4528" e_stop="3914" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9074" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="3914"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9066" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335256" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACA</gDNA_template>
            <first_frame> I  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  V  R  I  R  K  L  M  N  Y  *  S  R  T  R  L  M  P  F  G  L  T  V  I  S  F  L  S  *  L  H  I  L  P  *  E  G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L  I  S  M  S  S  K  G  S  G  L  T  I  K  I  L  Q  T  *  F  F  I  H  L  K  M  N  </first_frame>
            <second_frame>  Y  S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R  *  G  *  E  N  S  *  I  T  E  V  A  L  G  *  C  P  L  V  *  Q  S  F  R  F  C  L  N  F  I  F  C  P  E  K  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I  *  S  Q  *  V  P  R  V  V  V  *  P  *  R  S  C  R  L  N  S  L  F  I  L  K  *  T </second_frame>
            <third_frame>   I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I  G  K  D  K  K  T  H  E  L  L  K  S  H  *  V  N  A  L  W  S  D  S  H  F  V  F  V  L  T  S  Y  S  A  L  R  R  C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  N  L  N  E  F  Q  G  *  W  F  D  H  K  D  L  A  D  L  I  L  Y  S  S  *  N  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>804</number_coding_nucleotides>
                  <number_encoded_amino_acids>268</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9054" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="8183" e_stop="8145"/>
            <exon e_start="7946" e_stop="7867"/>
            <exon e_start="7797" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="5061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.267" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.969" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-only e_score="0.963"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9054" e_stop="8940" e_length="115"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.905">
            <gDNA_intron_boundary i_start="8764" i_stop="8184" i_length="581"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8183" e_stop="8145" e_length="39"/>
          </exon>
          <intron i_serial="3" don_prob="0.267" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8144" i_stop="7947" i_length="198"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7867" e_length="80"/>
          </exon>
          <intron i_serial="4" don_prob="0.969" acc_prob="0.975">
            <gDNA_intron_boundary i_start="7866" i_stop="7798" i_length="69"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="7797" e_stop="7731" e_length="67"/>
          </exon>
          <intron i_serial="5" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="6" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="7" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="8" e_score="0.963">
            <gDNA_exon_boundary e_start="5168" e_stop="5061" e_length="108"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9054" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="8183" stop="8145"/>
              <exon start="7946" stop="7867"/>
              <exon start="7797" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="5061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315637" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : CTTTAGCCGGTACCTGCACTGTTAGGTAGAAGGATGCAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATG : GAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCG</gDNA_template>
            <first_frame> I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  S :   F  S  R  Y  L  H  C  *  V  E  G  C  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D   : G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D   </first_frame>
            <second_frame>  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : A  L  A  G  T  C  T  V  R  *  K  D  A   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  :  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  </second_frame>
            <third_frame>   S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  L  *  P  V  P  A  L  L  G  R  R  M  Q  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W :   K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8158" stop="8145"/>
                    <exon start="7946" stop="7867"/>
                    <exon start="7797" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="5063"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>549</number_coding_nucleotides>
                  <number_encoded_amino_acids>183</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEGCRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="8183" stop="8159"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRSFSRYLHC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9072" e_stop="8940"/>
            <exon e_start="8843" e_stop="8765"/>
            <exon e_start="7946" e_stop="7731"/>
            <exon e_start="7517" e_stop="7446"/>
            <exon e_start="5470" e_stop="5261"/>
            <exon e_start="5168" e_stop="4982"/>
            <exon e_start="4910" e_stop="4777"/>
            <exon e_start="4528" e_stop="3279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.976" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.849" acc_prob="0.823" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.868" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9072" e_stop="8940" e_length="133"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="8939" i_stop="8844" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8843" e_stop="8765" e_length="79"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.990">
            <gDNA_intron_boundary i_start="8764" i_stop="7947" i_length="818"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="7946" e_stop="7731" e_length="216"/>
          </exon>
          <intron i_serial="3" don_prob="0.976" acc_prob="0.923">
            <gDNA_intron_boundary i_start="7730" i_stop="7518" i_length="213"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="7517" e_stop="7446" e_length="72"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.994">
            <gDNA_intron_boundary i_start="7445" i_stop="5471" i_length="1975"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5470" e_stop="5261" e_length="210"/>
          </exon>
          <intron i_serial="5" don_prob="0.849" acc_prob="0.823">
            <gDNA_intron_boundary i_start="5260" i_stop="5169" i_length="92"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="5168" e_stop="4982" e_length="187"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="4981" i_stop="4911" i_length="71"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="4910" e_stop="4777" e_length="134"/>
          </exon>
          <intron i_serial="7" don_prob="0.868" acc_prob="0.991">
            <gDNA_intron_boundary i_start="4776" i_stop="4529" i_length="248"/>
          </intron>
          <exon e_serial="8" e_score="0.999">
            <gDNA_exon_boundary e_start="4528" e_stop="3279" e_length="1250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9072" stop="8940"/>
              <exon start="8843" stop="8765"/>
              <exon start="7946" stop="7731"/>
              <exon start="7517" stop="7446"/>
              <exon start="5470" stop="5261"/>
              <exon start="5168" stop="4982"/>
              <exon start="4910" stop="4777"/>
              <exon start="4528" stop="3279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335257" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAGCTCAAACCCTAACCATTCATTAACCTTATCTGTCTTCACTCCGGCGAACGGCGATGTCTCACTTCGGTAGATCAGGCCCACCGGACATCAAAGACACCTACTCTCTGCTCGTTCTCAACGTTACTTTTC : GTACCACTGCTGATGACTTGTTTCCTCTATTTGATAAGTATGGAAAAGTAGTCGATGTCTTTATCCCTAGAGACCGAAG : GACTGGAGATTCTAGGGGTTTTGCATTTGTGCGCTACAAGTATCAGGATGAGGCTCAAAAAGCAGTGGAAAAGCTTGATGGTAACTGATCACATTAATATTTGGATGGTAGCCTATGTTGCTGTTGTTCACACTGATATTTGGTCACAGGAAGAGTTGTAGATGGTCGGGAAATCATGGTTCGATTTGCGAAGTACGGCCCTAATGCTGAGAGAAT : TGACAAAGGTAGAATTTTGGAGCCTGTACAAAGGCCAAAAGGGAGGTCAAGAAGCCGCAGTCCTAGACCAAG : GCATCGTGATCATAGGGACAAGGATTCTAGAAGGAGAAGCCGAAGTAGAAGTAGAAGTAGAAGTAGGGGAAGGTATGAGCGTGATCAGTACCGTGGAAGAGACAGAGATAACCGTCATCGGAGCAGAAGCCGCAGCCCTGATTACCACAGAGGTCGTGGGAGAGGTAAATATGATGAGGACAGGCGCAGCCGAAGTCGGTCTCATGGAAG : AAGTGCCTCCCCTGCTCGCCGTAGCCCCAGTCCTCGAAGGAGCCCTTCTCCACGAAGAACAACTCCTCCCAGGGATGCTAGTCCAGATGGACGTAATCACAAGGACCGGTCTCCAACTCCAAAGAGTATATCACCTCGGGGTAGACGTGCTGGTTCTCGCAGCCCCTTGCCACGTTCTGATGCTGAT : GATTGAGGAGCAAGGGAGGAGCCACAGTTGTAATCTGGCTTTGGTTGATGCTGCGTATCAGGACATTCCTAAGTGAATGATACTTTCATCTGTATTCTGCTTGCTAGAACTGGTTGGCCAGACTTATTTATAAG : TTGGGTCGTGAAAAGTCAATGTGGCTGAATCACAAGACGATGCAGCAGCTGTTGATGCTGTTATATTTGCTGTTGGTTGTAATTTTGTTGCCGTTCACAAACTACTGTTTCTTCGCTGAATGGCAAGGAGATGCAGCAGCTGTAGATGCTGTTTTAACTTGGCTGCTTATAATTTGTTGCTGGTGACATACTACTGTTTGTTGGTTGAATGCAAGCAGATGCAGCAGCTGTTGGTGCTGTTTTAGCTTTGCTGTTGTATTTTTGTTGCTGGTGACAAATTACATTTTCTATACAGATGTTCTGGATTCTCATGATCGGTAAGGATAAGAAAACTCATGAATTACTGAAGTCGCACTAGGTTAATGCCCTTTGGTCTGACAGTCATTTCGTTTTTGTCTTAACTTCATATTCTGCCCTGAGAAGGTGTTAGCTGTGATCATCTTTAAGATGAAAGGAATCCGCATGTAGTGTAGCAGTTGAAGTTGATTCCAGGATGAGATTTGTTATGCCGAGTAAAGATTTCGATATAAGATCTAATCTCAATGAGTTCCAAGGGTAGTGGTTTGACCATAAAGATCTTGCAGACTTAATTCTTTATTCATCTTAAAATGAACAAATAATATTAAATTTCCCAATCACTAATACCTTGTTCTAGTGTCTATTTGCTTTATGGTCTTGAAAGTGTTCTTCAAGTACATAGCACACCCCCATACAGTGCATGATTTCATGCTTATACTTGTGAAGTTCTAGCTGATATCTGTAGATCTGTTGTTGCTGTTGGCTGATTGCTTATCAAACTGATCCTGCTTTTTGGTGTTGATGGTTTGCTTGATGTGTTTAATTGGATCCTCTGCACGTGCCTTCTGAAGGAGCTTAAGCTGTGTGTTTATGATGTGCTGACTGCCATGTCTCCTCTGGTATGCACCAATCTGGGTTCTTTTTCATCGAGATGTGTGCACATTATCAATTTGGAGATTTGATCGATTCCTGTGAGATGTTTAATTTATCGAACATAACCTTCTTTGATTACATCTTCAAGTGTCTGGAATTTGTGTCCCTGGACAGCGGTTAAATTACCTCATTTAGGTGTTCCCCATACAGAATTTGTGTCCTCTCATATGAGTCTTGTTCGTATGTGCTTGTTACCATATTGAACAATCTCTTTTTGCTAAATGGCTGAGTTTGACTTGTTTGGAGAGGAAGTTGGGGAAGGTAACTAGATATAAATTTGGTCTTTTACTTGTTACGAA</gDNA_template>
            <first_frame> I  A  Q  T  L  T  I  H  *  P  Y  L  S  S  L  R  R  T  A  M  S  H  F  G  R  S  G  P  P  D  I  K  D  T  Y  S  L  L  V  L  N  V  T  F   : R  T  T  A  D  D  L  F  P  L  F  D  K  Y  G  K  V  V  D  V  F  I  P  R  D  R  R :   T  G  D  S  R  G  F  A  F  V  R  Y  K  Y  Q  D  E  A  Q  K  A  V  E  K  L  D  G  N  *  S  H  *  Y  L  D  G  S  L  C  C  C  C  S  H  *  Y  L  V  T  G  R  V  V  D  G  R  E  I  M  V  R  F  A  K  Y  G  P  N  A  E  R  I :   D  K  G  R  I  L  E  P  V  Q  R  P  K  G  R  S  R  S  R  S  P  R  P  R :   H  R  D  H  R  D  K  D  S  R  R  R  S  R  S  R  S  R  S  R  S  R  G  R  Y  E  R  D  Q  Y  R  G  R  D  R  D  N  R  H  R  S  R  S  R  S  P  D  Y  H  R  G  R  G  R  G  K  Y  D  E  D  R  R  S  R  S  R  S  H  G  R :   S  A  S  P  A  R  R  S  P  S  P  R  R  S  P  S  P  R  R  T  T  P  P  R  D  A  S  P  D  G  R  N  H  K  D  R  S  P  T  P  K  S  I  S  P  R  G  R  R  A  G  S  R  S  P  L  P  R  S  D  A  D  :  D  *  G  A  R  E  E  P  Q  L  *  S  G  F  G  *  C  C  V  S  G  H  S  *  V  N  D  T  F  I  C  I  L  L  A  R  T  G  W  P  D  L  F  I  S :   W  V  V  K  S  Q  C  G  *  I  T  R  R  C  S  S  C  *  C  C  Y  I  C  C  W  L  *  F  C  C  R  S  Q  T  T  V  S  S  L  N  G  K  E  M  Q  Q  L  *  M  L  F  *  L  G  C  L  *  F  V  A  G  D  I  L  L  F  V  G  *  M  Q  A  D  A  A  A  V  G  A  V  L  A  L  L  L  Y  F  C  C  W  *  Q  I  T  F  S  I  Q  M  F  W  I  L  M  I  G  K  D  K  K  T  H  E  L  L  K  S  H  *  V  N  A  L  W  S  D  S  H  F  V  F  V  L  T  S  Y  S  A  L  R  R  C  *  L  *  S  S  L  R  *  K  E  S  A  C  S  V  A  V  E  V  D  S  R  M  R  F  V  M  P  S  K  D  F  D  I  R  S  N  L  N  E  F  Q  G  *  W  F  D  H  K  D  L  A  D  L  I  L  Y  S  S  *  N  E  Q  I  I  L  N  F  P  I  T  N  T  L  F  *  C  L  F  A  L  W  S  *  K  C  S  S  S  T  *  H  T  P  I  Q  C  M  I  S  C  L  Y  L  *  S  S  S  *  Y  L  *  I  C  C  C  C  W  L  I  A  Y  Q  T  D  P  A  F  W  C  *  W  F  A  *  C  V  *  L  D  P  L  H  V  P  S  E  G  A  *  A  V  C  L  *  C  A  D  C  H  V  S  S  G  M  H  Q  S  G  F  F  F  I  E  M  C  A  H  Y  Q  F  G  D  L  I  D  S  C  E  M  F  N  L  S  N  I  T  F  F  D  Y  I  F  K  C  L  E  F  V  S  L  D  S  G  *  I  T  S  F  R  C  S  P  Y  R  I  C  V  L  S  Y  E  S  C  S  Y  V  L  V  T  I  L  N  N  L  F  L  L  N  G  *  V  *  L  V  W  R  G  S  W  G  R  *  L  D  I  N  L  V  F  Y  L  L  R  </first_frame>
            <second_frame>  *  L  K  P  *  P  F  I  N  L  I  C  L  H  S  G  E  R  R  C  L  T  S  V  D  Q  A  H  R  T  S  K  T  P  T  L  C  S  F  S  T  L  L  F  :  V  P  L  L  M  T  C  F  L  Y  L  I  S  M  E  K  *  S  M  S  L  S  L  E  T  E   : G  L  E  I  L  G  V  L  H  L  C  A  T  S  I  R  M  R  L  K  K  Q  W  K  S  L  M  V  T  D  H  I  N  I  W  M  V  A  Y  V  A  V  V  H  T  D  I  W  S  Q  E  E  L  *  M  V  G  K  S  W  F  D  L  R  S  T  A  L  M  L  R  E   : L  T  K  V  E  F  W  S  L  Y  K  G  Q  K  G  G  Q  E  A  A  V  L  D  Q   : G  I  V  I  I  G  T  R  I  L  E  G  E  A  E  V  E  V  E  V  E  V  G  E  G  M  S  V  I  S  T  V  E  E  T  E  I  T  V  I  G  A  E  A  A  A  L  I  T  T  E  V  V  G  E  V  N  M  M  R  T  G  A  A  E  V  G  L  M  E   : E  V  P  P  L  L  A  V  A  P  V  L  E  G  A  L  L  H  E  E  Q  L  L  P  G  M  L  V  Q  M  D  V  I  T  R  T  G  L  Q  L  Q  R  V  Y  H  L  G  V  D  V  L  V  L  A  A  P  C  H  V  L  M  L  M :   I  E  E  Q  G  R  S  H  S  C  N  L  A  L  V  D  A  A  Y  Q  D  I  P  K  *  M  I  L  S  S  V  F  C  L  L  E  L  V  G  Q  T  Y  L  *   : V  G  S  *  K  V  N  V  A  E  S  Q  D  D  A  A  A  V  D  A  V  I  F  A  V  G  C  N  F  V  A  V  H  K  L  L  F  L  R  *  M  A  R  R  C  S  S  C  R  C  C  F  N  L  A  A  Y  N  L  L  L  V  T  Y  Y  C  L  L  V  E  C  K  Q  M  Q  Q  L  L  V  L  F  *  L  C  C  C  I  F  V  A  G  D  K  L  H  F  L  Y  R  C  S  G  F  S  *  S  V  R  I  R  K  L  M  N  Y  *  S  R  T  R  L  M  P  F  G  L  T  V  I  S  F  L  S  *  L  H  I  L  P  *  E  G  V  S  C  D  H  L  *  D  E  R  N  P  H  V  V  *  Q  L  K  L  I  P  G  *  D  L  L  C  R  V  K  I  S  I  *  D  L  I  S  M  S  S  K  G  S  G  L  T  I  K  I  L  Q  T  *  F  F  I  H  L  K  M  N  K  *  Y  *  I  S  Q  S  L  I  P  C  S  S  V  Y  L  L  Y  G  L  E  S  V  L  Q  V  H  S  T  P  P  Y  S  A  *  F  H  A  Y  T  C  E  V  L  A  D  I  C  R  S  V  V  A  V  G  *  L  L  I  K  L  I  L  L  F  G  V  D  G  L  L  D  V  F  N  W  I  L  C  T  C  L  L  K  E  L  K  L  C  V  Y  D  V  L  T  A  M  S  P  L  V  C  T  N  L  G  S  F  S  S  R  C  V  H  I  I  N  L  E  I  *  S  I  P  V  R  C  L  I  Y  R  T  *  P  S  L  I  T  S  S  S  V  W  N  L  C  P  W  T  A  V  K  L  P  H  L  G  V  P  H  T  E  F  V  S  S  H  M  S  L  V  R  M  C  L  L  P  Y  *  T  I  S  F  C  *  M  A  E  F  D  L  F  G  E  E  V  G  E  G  N  *  I  *  I  W  S  F  T  C  Y  E </second_frame>
            <third_frame>   S  S  N  P  N  H  S  L  T  L  S  V  F  T  P  A  N  G  D  V  S  L  R  *  I  R  P  T  G  H  Q  R  H  L  L  S  A  R  S  Q  R  Y  F  S :   Y  H  C  *  *  L  V  S  S  I  *  *  V  W  K  S  S  R  C  L  Y  P  *  R  P  K  :  D  W  R  F  *  G  F  C  I  C  A  L  Q  V  S  G  *  G  S  K  S  S  G  K  A  *  W  *  L  I  T  L  I  F  G  W  *  P  M  L  L  L  F  T  L  I  F  G  H  R  K  S  C  R  W  S  G  N  H  G  S  I  C  E  V  R  P  *  C  *  E  N  :  *  Q  R  *  N  F  G  A  C  T  K  A  K  R  E  V  K  K  P  Q  S  *  T  K  :  A  S  *  S  *  G  Q  G  F  *  K  E  K  P  K  *  K  *  K  *  K  *  G  K  V  *  A  *  S  V  P  W  K  R  Q  R  *  P  S  S  E  Q  K  P  Q  P  *  L  P  Q  R  S  W  E  R  *  I  *  *  G  Q  A  Q  P  K  S  V  S  W  K  :  K  C  L  P  C  S  P  *  P  Q  S  S  K  E  P  F  S  T  K  N  N  S  S  Q  G  C  *  S  R  W  T  *  S  Q  G  P  V  S  N  S  K  E  Y  I  T  S  G  *  T  C  W  F  S  Q  P  L  A  T  F  *  C  *   : *  L  R  S  K  G  G  A  T  V  V  I  W  L  W  L  M  L  R  I  R  T  F  L  S  E  *  Y  F  H  L  Y  S  A  C  *  N  W  L  A  R  L  I  Y  K  :  L  G  R  E  K  S  M  W  L  N  H  K  T  M  Q  Q  L  L  M  L  L  Y  L  L  L  V  V  I  L  L  P  F  T  N  Y  C  F  F  A  E  W  Q  G  D  A  A  A  V  D  A  V  L  T  W  L  L  I  I  C  C  W  *  H  T  T  V  C  W  L  N  A  S  R  C  S  S  C  W  C  C  F  S  F  A  V  V  F  L  L  L  V  T  N  Y  I  F  Y  T  D  V  L  D  S  H  D  R  *  G  *  E  N  S  *  I  T  E  V  A  L  G  *  C  P  L  V  *  Q  S  F  R  F  C  L  N  F  I  F  C  P  E  K  V  L  A  V  I  I  F  K  M  K  G  I  R  M  *  C  S  S  *  S  *  F  Q  D  E  I  C  Y  A  E  *  R  F  R  Y  K  I  *  S  Q  *  V  P  R  V  V  V  *  P  *  R  S  C  R  L  N  S  L  F  I  L  K  *  T  N  N  I  K  F  P  N  H  *  Y  L  V  L  V  S  I  C  F  M  V  L  K  V  F  F  K  Y  I  A  H  P  H  T  V  H  D  F  M  L  I  L  V  K  F  *  L  I  S  V  D  L  L  L  L  L  A  D  C  L  S  N  *  S  C  F  L  V  L  M  V  C  L  M  C  L  I  G  S  S  A  R  A  F  *  R  S  L  S  C  V  F  M  M  C  *  L  P  C  L  L  W  Y  A  P  I  W  V  L  F  H  R  D  V  C  T  L  S  I  W  R  F  D  R  F  L  *  D  V  *  F  I  E  H  N  L  L  *  L  H  L  Q  V  S  G  I  C  V  P  G  Q  R  L  N  Y  L  I  *  V  F  P  I  Q  N  L  C  P  L  I  *  V  L  F  V  C  A  C  Y  H  I  E  Q  S  L  F  A  K  W  L  S  L  T  C  L  E  R  K  L  G  K  V  T  R  Y  K  F  G  L  L  L  V  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7785" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>597</number_coding_nucleotides>
                  <number_encoded_amino_acids>199</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVGKSWFDLRSTALMLRELTKVEFWSLYKGQKGGQEAAVLDQGIVIIGTRILEGEAEVEVEVEVGEGMSVISTVEETEITVIGAEAAALITTEVVGEVNMMRTGAAEVGLMEEVPPLLAVAPVLEGALLHEEQLLPGMLVQMDVITRTGLQLQRVYHLGVDVLVLAAPCHVLMLMIEEQGRSHSCNLALVDAAYQDIPK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7810" stop="7731"/>
                    <exon start="7517" stop="7446"/>
                    <exon start="5470" stop="5261"/>
                    <exon start="5168" stop="4982"/>
                    <exon start="4910" stop="4905"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YLVTGRVVDGREIMVRFAKYGPNAERIDKGRILEPVQRPKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSRGRYERDQYRGRDRDNRHRSRSRSPDYHRGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRSPSPRRTTPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPRSDADD*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9045" stop="8940"/>
                    <exon start="8843" stop="8765"/>
                    <exon start="7946" stop="7859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYLSSLRRTAMSHFGRSGPPDIKDTYSLLVLNVTFRTTADDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGN*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4803" stop="4777"/>
                    <exon start="4528" stop="4343"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NWLARLIYKLGREKSMWLNHKTMQQLLMLLYLLLVVILLPFTNYCFFAEWQGDAAAVDAVLTWLLIICCW*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="3743" stop="3549"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLIKLILLFGVDGLLDVFNWILCTCLLKELKLCVYDVLTAMSPLVCTNLGSFSSRCVHIINLEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="25867" PGL_stop="26354"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25867" e_stop="26354"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.924">
            <gDNA_exon_boundary e_start="25867" e_stop="26354" e_length="488"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25867" stop="26354"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U339744" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTGGAGATGGTGCAGAAAGTAGGTGCACACTTCCCGATGGCGTCAGAAAGTGTGACCCTTCCAGCCAATGACAAAGAAGTTTAGGAAAGTGACTTGCCTATACAAAAGGCACTTTCCTAAACACTTTTCTTTAGTTTTTGCAACTTGACAAACACTTTTCAAGAACTCTTGCAAAGACTAACACAAAGCATATGCAGAATCATTCCTAGGACAACAGCAACATCTGAAGCCTTTCGTCTAGTTGTCTAGGAATTTATTCTCTTGTTCTCAAATTGTAAACCACTCCTAAATCTATAAAGGAATTGGTGTGTTGTGTTAAAAGTCTAGGTTGTCCAGGTGGGATAGCTTAGTGGGTAGAGTGTTTTTCTACTTAGGCTTGTTGAGCAATAGAGGTCTATTGCTTAACGGTAAGATTGATAACTCTTTCTTACGTTTGGTGTAATCGTGTTTCGCTTTTGCTTTTGAAGATTAGTGAAAACGATTGAAA</gDNA_template>
            <first_frame> A  G  D  G  A  E  S  R  C  T  L  P  D  G  V  R  K  C  D  P  S  S  Q  *  Q  R  S  L  G  K  *  L  A  Y  T  K  G  T  F  L  N  T  F  L  *  F  L  Q  L  D  K  H  F  S  R  T  L  A  K  T  N  T  K  H  M  Q  N  H  S  *  D  N  S  N  I  *  S  L  S  S  S  C  L  G  I  Y  S  L  V  L  K  L  *  T  T  P  K  S  I  K  E  L  V  C  C  V  K  S  L  G  C  P  G  G  I  A  *  W  V  E  C  F  S  T  *  A  C  *  A  I  E  V  Y  C  L  T  V  R  L  I  T  L  S  Y  V  W  C  N  R  V  S  L  L  L  L  K  I  S  E  N  D  *   </first_frame>
            <second_frame>  L  E  M  V  Q  K  V  G  A  H  F  P  M  A  S  E  S  V  T  L  P  A  N  D  K  E  V  *  E  S  D  L  P  I  Q  K  A  L  S  *  T  L  F  F  S  F  C  N  L  T  N  T  F  Q  E  L  L  Q  R  L  T  Q  S  I  C  R  I  I  P  R  T  T  A  T  S  E  A  F  R  L  V  V  *  E  F  I  L  L  F  S  N  C  K  P  L  L  N  L  *  R  N  W  C  V  V  L  K  V  *  V  V  Q  V  G  *  L  S  G  *  S  V  F  L  L  R  L  V  E  Q  *  R  S  I  A  *  R  *  D  *  *  L  F  L  T  F  G  V  I  V  F  R  F  C  F  *  R  L  V  K  T  I  E  </second_frame>
            <third_frame>   W  R  W  C  R  K  *  V  H  T  S  R  W  R  Q  K  V  *  P  F  Q  P  M  T  K  K  F  R  K  V  T  C  L  Y  K  R  H  F  P  K  H  F  S  L  V  F  A  T  *  Q  T  L  F  K  N  S  C  K  D  *  H  K  A  Y  A  E  S  F  L  G  Q  Q  Q  H  L  K  P  F  V  *  L  S  R  N  L  F  S  C  S  Q  I  V  N  H  S  *  I  Y  K  G  I  G  V  L  C  *  K  S  R  L  S  R  W  D  S  L  V  G  R  V  F  F  Y  L  G  L  L  S  N  R  G  L  L  L  N  G  K  I  D  N  S  F  L  R  L  V  *  S  C  F  A  F  A  F  E  D  *  *  K  R  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="27036" PGL_stop="27820"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27036" e_stop="27820"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="27036" e_stop="27820" e_length="785"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27036" stop="27820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331424" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTAATTATTAGCAAATGATGATAGTTCCCACAATTTTTAATTTCCTTCAGTGTATTACATTCTTATATCTTTTCGCGGTTACATTTGCTACCACTGAGGAAGCAACTGCTCTTCTAAAATGGAAAGCAACTTTCCAAAACCAGAACAATTCTTTATTGGCTTCGTGGACGCTAAGTGGACCTGCTGGTACCAATAGCATTGGAGCGGCGAGTTCTAATGCATGTGAGGACTGGTATGGAGTTACATGTTCTAACGGTAGGGTATACATGTTGAATATGACAAATGCTGGTATCAATGGCACACTGTATGATTTTCCATTTTCATCACTCCCTTTTCTTGGTTATCTTGATCTTAGCATCAACAACTTCTCTGGCACTATCCCACCTGAAATAGGAAAGCTCACTAATCTTGGCTATCTTGACTTGTCCTTCAATCAGATTTCGGGCATAATCCCACCACAAATCGGCTCATTAACAAAGCTTGAGACCCTCCACATCTTTAACAGCCAATTATATGGTTCCATTCCGGAGGAAATAGGTCACCTAAGGTCTTTGACTGAGCTAGCTTTGAATTCTAACTCTCTTAGTGGTTCAATTCCTGCTTCATTGGGGACTTTGGACAAATTGTCTTATTTGCATCTGTATGAGAACCATCTTTCTGGTTCCATTCCAGCAGAAATAGGGAAACTTGTCAATCTCCTTCAACTTTTTCTTGATTCAAACAAGTTAACTGGTCATATTCCTCCAGAAATTGGAAAACTTGTCAATCTCCTTCAACTTTTT</gDNA_template>
            <first_frame> L  L  I  I  S  K  *  *  *  F  P  Q  F  L  I  S  F  S  V  L  H  S  Y  I  F  S  R  L  H  L  L  P  L  R  K  Q  L  L  F  *  N  G  K  Q  L  S  K  T  R  T  I  L  Y  W  L  R  G  R  *  V  D  L  L  V  P  I  A  L  E  R  R  V  L  M  H  V  R  T  G  M  E  L  H  V  L  T  V  G  Y  T  C  *  I  *  Q  M  L  V  S  M  A  H  C  M  I  F  H  F  H  H  S  L  F  L  V  I  L  I  L  A  S  T  T  S  L  A  L  S  H  L  K  *  E  S  S  L  I  L  A  I  L  T  C  P  S  I  R  F  R  A  *  S  H  H  K  S  A  H  *  Q  S  L  R  P  S  T  S  L  T  A  N  Y  M  V  P  F  R  R  K  *  V  T  *  G  L  *  L  S  *  L  *  I  L  T  L  L  V  V  Q  F  L  L  H  W  G  L  W  T  N  C  L  I  C  I  C  M  R  T  I  F  L  V  P  F  Q  Q  K  *  G  N  L  S  I  S  F  N  F  F  L  I  Q  T  S  *  L  V  I  F  L  Q  K  L  E  N  L  S  I  S  F  N  F   </first_frame>
            <second_frame>  F  *  L  L  A  N  D  D  S  S  H  N  F  *  F  P  S  V  Y  Y  I  L  I  S  F  R  G  Y  I  C  Y  H  *  G  S  N  C  S  S  K  M  E  S  N  F  P  K  P  E  Q  F  F  I  G  F  V  D  A  K  W  T  C  W  Y  Q  *  H  W  S  G  E  F  *  C  M  *  G  L  V  W  S  Y  M  F  *  R  *  G  I  H  V  E  Y  D  K  C  W  Y  Q  W  H  T  V  *  F  S  I  F  I  T  P  F  S  W  L  S  *  S  *  H  Q  Q  L  L  W  H  Y  P  T  *  N  R  K  A  H  *  S  W  L  S  *  L  V  L  Q  S  D  F  G  H  N  P  T  T  N  R  L  I  N  K  A  *  D  P  P  H  L  *  Q  P  I  I  W  F  H  S  G  G  N  R  S  P  K  V  F  D  *  A  S  F  E  F  *  L  S  *  W  F  N  S  C  F  I  G  D  F  G  Q  I  V  L  F  A  S  V  *  E  P  S  F  W  F  H  S  S  R  N  R  E  T  C  Q  S  P  S  T  F  S  *  F  K  Q  V  N  W  S  Y  S  S  R  N  W  K  T  C  Q  S  P  S  T  F  </second_frame>
            <third_frame>   F  N  Y  *  Q  M  M  I  V  P  T  I  F  N  F  L  Q  C  I  T  F  L  Y  L  F  A  V  T  F  A  T  T  E  E  A  T  A  L  L  K  W  K  A  T  F  Q  N  Q  N  N  S  L  L  A  S  W  T  L  S  G  P  A  G  T  N  S  I  G  A  A  S  S  N  A  C  E  D  W  Y  G  V  T  C  S  N  G  R  V  Y  M  L  N  M  T  N  A  G  I  N  G  T  L  Y  D  F  P  F  S  S  L  P  F  L  G  Y  L  D  L  S  I  N  N  F  S  G  T  I  P  P  E  I  G  K  L  T  N  L  G  Y  L  D  L  S  F  N  Q  I  S  G  I  I  P  P  Q  I  G  S  L  T  K  L  E  T  L  H  I  F  N  S  Q  L  Y  G  S  I  P  E  E  I  G  H  L  R  S  L  T  E  L  A  L  N  S  N  S  L  S  G  S  I  P  A  S  L  G  T  L  D  K  L  S  Y  L  H  L  Y  E  N  H  L  S  G  S  I  P  A  E  I  G  K  L  V  N  L  L  Q  L  F  L  D  S  N  K  L  T  G  H  I  P  P  E  I  G  K  L  V  N  L  L  Q  L  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27050" stop="27820"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>771</number_coding_nucleotides>
                  <number_encoded_amino_acids>257</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QMMIVPTIFNFLQCITFLYLFAVTFATTEEATALLKWKATFQNQNNSLLASWTLSGPAGTNSIGAASSNACEDWYGVTCSNGRVYMLNMTNAGINGTLYDFPFSSLPFLGYLDLSINNFSGTIPPEIGKLTNLGYLDLSFNQISGIIPPQIGSLTKLETLHIFNSQLYGSIPEEIGHLRSLTELALNSNSLSGSIPASLGTLDKLSYLHLYENHLSGSIPAEIGKLVNLLQLFLDSNKLTGHIPPEIGKLVNLLQLF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28075" PGL_stop="28640"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28075" e_stop="28640"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="28075" e_stop="28640" e_length="566"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28075" stop="28640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340366" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAGCAACTGCTCCAGTTTCAAAAGGGTTCGCTTCAATAACAACAGCTTTACTGGGAATTTATCTGAAGCTTTTGGCATCCATCCCGAGCTGAAGTTCATTGATTTGAGCGACAATGATTTTCATGGCGAACTCAGCAGCAACTGGGGGAAATACAAGAATTTGACTACTTTTTGGATAGCCAGAAATAACATTAGCGGTAGCATACCACCAGAGATTGGAAACATCAAAGGTCTTTTGGGACTTGATCTTTCAGCAAATCATTTGGTTGGGCAAATACCAGAGGAATTTGGAAAATTAACCTCTCTGGTTGAGCTCTCATTGAAAAACAACCAAATTTCTGGCAATATACCTCAGGAACTTGGGTCACTGACAAATTTAGACTCCCTTGATCTATCAGACAATAGATTGAATGGGTCGATCCCAACGTTTTTAGGAGATTACCAACACCTGTTTCACTTGAACCTCAGTTGTAACAAGTTTGGCCAGAAAATTCCAAAGGAGATAGGGGTATAACTCATCTTAATGTACTTGATTTGAGCCATAATCTTCTGGTTGGAGAAAT</gDNA_template>
            <first_frame> L  E  Q  L  L  Q  F  Q  K  G  S  L  Q  *  Q  Q  L  Y  W  E  F  I  *  S  F  W  H  P  S  R  A  E  V  H  *  F  E  R  Q  *  F  S  W  R  T  Q  Q  Q  L  G  E  I  Q  E  F  D  Y  F  L  D  S  Q  K  *  H  *  R  *  H  T  T  R  D  W  K  H  Q  R  S  F  G  T  *  S  F  S  K  S  F  G  W  A  N  T  R  G  I  W  K  I  N  L  S  G  *  A  L  I  E  K  Q  P  N  F  W  Q  Y  T  S  G  T  W  V  T  D  K  F  R  L  P  *  S  I  R  Q  *  I  E  W  V  D  P  N  V  F  R  R  L  P  T  P  V  S  L  E  P  Q  L  *  Q  V  W  P  E  N  S  K  G  D  R  G  I  T  H  L  N  V  L  D  L  S  H  N  L  L  V  G  E   </first_frame>
            <second_frame>  L  S  N  C  S  S  F  K  R  V  R  F  N  N  N  S  F  T  G  N  L  S  E  A  F  G  I  H  P  E  L  K  F  I  D  L  S  D  N  D  F  H  G  E  L  S  S  N  W  G  K  Y  K  N  L  T  T  F  W  I  A  R  N  N  I  S  G  S  I  P  P  E  I  G  N  I  K  G  L  L  G  L  D  L  S  A  N  H  L  V  G  Q  I  P  E  E  F  G  K  L  T  S  L  V  E  L  S  L  K  N  N  Q  I  S  G  N  I  P  Q  E  L  G  S  L  T  N  L  D  S  L  D  L  S  D  N  R  L  N  G  S  I  P  T  F  L  G  D  Y  Q  H  L  F  H  L  N  L  S  C  N  K  F  G  Q  K  I  P  K  E  I  G  V  *  L  I  L  M  Y  L  I  *  A  I  I  F  W  L  E  K  </second_frame>
            <third_frame>   *  A  T  A  P  V  S  K  G  F  A  S  I  T  T  A  L  L  G  I  Y  L  K  L  L  A  S  I  P  S  *  S  S  L  I  *  A  T  M  I  F  M  A  N  S  A  A  T  G  G  N  T  R  I  *  L  L  F  G  *  P  E  I  T  L  A  V  A  Y  H  Q  R  L  E  T  S  K  V  F  W  D  L  I  F  Q  Q  I  I  W  L  G  K  Y  Q  R  N  L  E  N  *  P  L  W  L  S  S  H  *  K  T  T  K  F  L  A  I  Y  L  R  N  L  G  H  *  Q  I  *  T  P  L  I  Y  Q  T  I  D  *  M  G  R  S  Q  R  F  *  E  I  T  N  T  C  F  T  *  T  S  V  V  T  S  L  A  R  K  F  Q  R  R  *  G  Y  N  S  S  *  C  T  *  F  E  P  *  S  S  G  W  R  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28076" stop="28591"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSNCSSFKRVRFNNNSFTGNLSEAFGIHPELKFIDLSDNDFHGELSSNWGKYKNLTTFWIARNNISGSIPPEIGNIKGLLGLDLSANHLVGQIPEEFGKLTSLVELSLKNNQISGNIPQELGSLTNLDSLDLSDNRLNGSIPTFLGDYQHLFHLNLSCNKFGQKIPKEIGV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="32012" PGL_stop="31157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32012" e_stop="31157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="32012" e_stop="31157" e_length="856"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32012" stop="31157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATAAGACGATAGATTCAAGTTCTATCGCACCAAAAGGGTAAGACATCAATTAGAGTTTTGATGCACTGTGATTGGGTTCAAGTCCCATAGAATTATGGCGTAACACGCCTTATATGGGTAAGACATTGAGTTCTAGCCAATGCACCATAGCGATGATAAAATAATGACTAAGAAAAATAATATATTTTTGATGAAATATCTTGAAATTCATCAGATTGAATTTGCTCCATTCCTTTAAAAGAATGTGGTAGCAACATGTGATAACTCTGAAATCCGTCTGTTGACTTGCTCCATTCAATCATATGAATGTGGTAGCAGTGAATGATTAGTCTGAAAGATGACAAATAATTAATTATATGAATAAGGGCGTGGAGGGACAAAATTATAATAGTCATCATTGTGGTAATGATAGAAGGAAGAACACTATAAGTTCTTCAAATAATCCTTCAAAATGTGAAGGCAATTTTTATTATCCAAATGGTATGAAATGTCATTAGACTTGTGAATGTTGTCAACCCAATAATTTGACAAGTTTATAAATCCTCTATCATGATACAAGAAGATAAAGTAATGGTACACTTGATCTTTCAAAGTGATGTTGAGGTGTGTTATGGAAATATGATGAATTTTAAAGCCATGACAATTTGCTTATAATGCAAATTTATGAAGTACATATAAATAATTAGTTCATTCCTTGAAGACAATGTGACTTGTGATGAGTATCGTGAATACTCGACCATTCTATAAGAGAATTGGTCCAGATGTGATAAAATCATTATATGTTGGATATATGCCACAACTCACCTCTATGGAAGGTTTGAGAAAAATGATATATGTCATTTCTCATCTCTACGG</gDNA_template>
            <first_frame> D  K  T  I  D  S  S  S  I  A  P  K  G  *  D  I  N  *  S  F  D  A  L  *  L  G  S  S  P  I  E  L  W  R  N  T  P  Y  M  G  K  T  L  S  S  S  Q  C  T  I  A  M  I  K  *  *  L  R  K  I  I  Y  F  *  *  N  I  L  K  F  I  R  L  N  L  L  H  S  F  K  R  M  W  *  Q  H  V  I  T  L  K  S  V  C  *  L  A  P  F  N  H  M  N  V  V  A  V  N  D  *  S  E  R  *  Q  I  I  N  Y  M  N  K  G  V  E  G  Q  N  Y  N  S  H  H  C  G  N  D  R  R  K  N  T  I  S  S  S  N  N  P  S  K  C  E  G  N  F  Y  Y  P  N  G  M  K  C  H  *  T  C  E  C  C  Q  P  N  N  L  T  S  L  *  I  L  Y  H  D  T  R  R  *  S  N  G  T  L  D  L  S  K  *  C  *  G  V  L  W  K  Y  D  E  F  *  S  H  D  N  L  L  I  M  Q  I  Y  E  V  H  I  N  N  *  F  I  P  *  R  Q  C  D  L  *  *  V  S  *  I  L  D  H  S  I  R  E  L  V  Q  M  *  *  N  H  Y  M  L  D  I  C  H  N  S  P  L  W  K  V  *  E  K  *  Y  M  S  F  L  I  S  T  </first_frame>
            <second_frame>  I  R  R  *  I  Q  V  L  S  H  Q  K  G  K  T  S  I  R  V  L  M  H  C  D  W  V  Q  V  P  *  N  Y  G  V  T  R  L  I  W  V  R  H  *  V  L  A  N  A  P  *  R  *  *  N  N  D  *  E  K  *  Y  I  F  D  E  I  S  *  N  S  S  D  *  I  C  S  I  P  L  K  E  C  G  S  N  M  *  *  L  *  N  P  S  V  D  L  L  H  S  I  I  *  M  W  *  Q  *  M  I  S  L  K  D  D  K  *  L  I  I  *  I  R  A  W  R  D  K  I  I  I  V  I  I  V  V  M  I  E  G  R  T  L  *  V  L  Q  I  I  L  Q  N  V  K  A  I  F  I  I  Q  M  V  *  N  V  I  R  L  V  N  V  V  N  P  I  I  *  Q  V  Y  K  S  S  I  M  I  Q  E  D  K  V  M  V  H  L  I  F  Q  S  D  V  E  V  C  Y  G  N  M  M  N  F  K  A  M  T  I  C  L  *  C  K  F  M  K  Y  I  *  I  I  S  S  F  L  E  D  N  V  T  C  D  E  Y  R  E  Y  S  T  I  L  *  E  N  W  S  R  C  D  K  I  I  I  C  W  I  Y  A  T  T  H  L  Y  G  R  F  E  K  N  D  I  C  H  F  S  S  L  R </second_frame>
            <third_frame>   *  D  D  R  F  K  F  Y  R  T  K  R  V  R  H  Q  L  E  F  *  C  T  V  I  G  F  K  S  H  R  I  M  A  *  H  A  L  Y  G  *  D  I  E  F  *  P  M  H  H  S  D  D  K  I  M  T  K  K  N  N  I  F  L  M  K  Y  L  E  I  H  Q  I  E  F  A  P  F  L  *  K  N  V  V  A  T  C  D  N  S  E  I  R  L  L  T  C  S  I  Q  S  Y  E  C  G  S  S  E  *  L  V  *  K  M  T  N  N  *  L  Y  E  *  G  R  G  G  T  K  L  *  *  S  S  L  W  *  *  *  K  E  E  H  Y  K  F  F  K  *  S  F  K  M  *  R  Q  F  L  L  S  K  W  Y  E  M  S  L  D  L  *  M  L  S  T  Q  *  F  D  K  F  I  N  P  L  S  *  Y  K  K  I  K  *  W  Y  T  *  S  F  K  V  M  L  R  C  V  M  E  I  *  *  I  L  K  P  *  Q  F  A  Y  N  A  N  L  *  S  T  Y  K  *  L  V  H  S  L  K  T  M  *  L  V  M  S  I  V  N  T  R  P  F  Y  K  R  I  G  P  D  V  I  K  S  L  Y  V  G  Y  M  P  Q  L  T  S  M  E  G  L  R  K  M  I  Y  V  I  S  H  L  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0255I02.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="37489" PGL_stop="38346"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37489" e_stop="38193"/>
            <exon e_start="38295" e_stop="38346"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.695" e_score="0.997"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="37489" e_stop="38193" e_length="705"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.695">
            <gDNA_intron_boundary i_start="38194" i_stop="38294" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="38295" e_stop="38346" e_length="52"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37489" stop="38193"/>
              <exon start="38295" stop="38346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATCCTCATCACTGTACTTCCTATTCTGGGAGCATTAGTGCTGCTTTGTGCTTTCGCTGGTTCTCTCTTTATGTGTGACCAAAGAAGAAGAGTTGGAGACGTTGAAAGAAGGGATGGTGATGGTTGGCTTTCGATATCCATGTTAGATGGGAAGGCATTGTACAGGGACATCTTAAATGCCACAGAAGAGTTCGATGCAAAATTTTGCATTGGGCAAGGAGGTCAGGGAAGTGTTTACAAGGTAAACCTTCCATTATTAGGAGATATAGCTGTGAAGAGACTTCATTCTTCATTTCAGAATACACATCCCAAAAGCTTCATAAATGAAGTAAGGGCATTGACTGGGATTAAGCACCGGAACATTGTGAGCCTCTACGGCTATTGTTCGAAAGCACAACACTCACTCTTGGTTTACGAGTATGTGGAGAGGGGGAGTTTGTCTAGTGTTTTAAGCAATGAAGTTGAGTCTAAGAAATTGGATTGGCTTAAAAGGGTGAATATCATCAAGGGTGTTGCTTTTGCTTTATCTTACATGCACCAGGATTGTTCACCACCCATTGTTCATCGAGACATACGTAGCAGTAATGTTTTGCTTGATTCTGAGTATGAAGCTCGTGTTGCAGACTTTGGAATAGCAAAGATTCTCAATCCAGACTCGTCCAATTGCACCGCGCTTGCAGGCACATATGGTTATGTCGCACCTG : AGCTTGCATATACAATGAAGGTTACACAAATGTGTGATGTGTATAGCTTTGG</gDNA_template>
            <first_frame> S  S  S  S  L  Y  F  L  F  W  E  H  *  C  C  F  V  L  S  L  V  L  S  L  C  V  T  K  E  E  E  L  E  T  L  K  E  G  M  V  M  V  G  F  R  Y  P  C  *  M  G  R  H  C  T  G  T  S  *  M  P  Q  K  S  S  M  Q  N  F  A  L  G  K  E  V  R  E  V  F  T  R  *  T  F  H  Y  *  E  I  *  L  *  R  D  F  I  L  H  F  R  I  H  I  P  K  A  S  *  M  K  *  G  H  *  L  G  L  S  T  G  T  L  *  A  S  T  A  I  V  R  K  H  N  T  H  S  W  F  T  S  M  W  R  G  G  V  C  L  V  F  *  A  M  K  L  S  L  R  N  W  I  G  L  K  G  *  I  S  S  R  V  L  L  L  L  Y  L  T  C  T  R  I  V  H  H  P  L  F  I  E  T  Y  V  A  V  M  F  C  L  I  L  S  M  K  L  V  L  Q  T  L  E  *  Q  R  F  S  I  Q  T  R  P  I  A  P  R  L  Q  A  H  M  V  M  S  H  L  :  S  L  H  I  Q  *  R  L  H  K  C  V  M  C  I  A  L  </first_frame>
            <second_frame>  H  P  H  H  C  T  S  Y  S  G  S  I  S  A  A  L  C  F  R  W  F  S  L  Y  V  *  P  K  K  K  S  W  R  R  *  K  K  G  W  *  W  L  A  F  D  I  H  V  R  W  E  G  I  V  Q  G  H  L  K  C  H  R  R  V  R  C  K  I  L  H  W  A  R  R  S  G  K  C  L  Q  G  K  P  S  I  I  R  R  Y  S  C  E  E  T  S  F  F  I  S  E  Y  T  S  Q  K  L  H  K  *  S  K  G  I  D  W  D  *  A  P  E  H  C  E  P  L  R  L  L  F  E  S  T  T  L  T  L  G  L  R  V  C  G  E  G  E  F  V  *  C  F  K  Q  *  S  *  V  *  E  I  G  L  A  *  K  G  E  Y  H  Q  G  C  C  F  C  F  I  L  H  A  P  G  L  F  T  T  H  C  S  S  R  H  T  *  Q  *  C  F  A  *  F  *  V  *  S  S  C  C  R  L  W  N  S  K  D  S  Q  S  R  L  V  Q  L  H  R  A  C  R  H  I  W  L  C  R  T  * :   A  C  I  Y  N  E  G  Y  T  N  V  *  C  V  *  L  W </second_frame>
            <third_frame>   I  L  I  T  V  L  P  I  L  G  A  L  V  L  L  C  A  F  A  G  S  L  F  M  C  D  Q  R  R  R  V  G  D  V  E  R  R  D  G  D  G  W  L  S  I  S  M  L  D  G  K  A  L  Y  R  D  I  L  N  A  T  E  E  F  D  A  K  F  C  I  G  Q  G  G  Q  G  S  V  Y  K  V  N  L  P  L  L  G  D  I  A  V  K  R  L  H  S  S  F  Q  N  T  H  P  K  S  F  I  N  E  V  R  A  L  T  G  I  K  H  R  N  I  V  S  L  Y  G  Y  C  S  K  A  Q  H  S  L  L  V  Y  E  Y  V  E  R  G  S  L  S  S  V  L  S  N  E  V  E  S  K  K  L  D  W  L  K  R  V  N  I  I  K  G  V  A  F  A  L  S  Y  M  H  Q  D  C  S  P  P  I  V  H  R  D  I  R  S  S  N  V  L  L  D  S  E  Y  E  A  R  V  A  D  F  G  I  A  K  I  L  N  P  D  S  S  N  C  T  A  L  A  G  T  Y  G  Y  V  A  P   : E  L  A  Y  T  M  K  V  T  Q  M  C  D  V  Y  S  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37491" stop="38193"/>
                    <exon start="38295" stop="38344"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>753</number_coding_nucleotides>
                  <number_encoded_amino_acids>251</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILITVLPILGALVLLCAFAGSLFMCDQRRRVGDVERRDGDGWLSISMLDGKALYRDILNATEEFDAKFCIGQGGQGSVYKVNLPLLGDIAVKRLHSSFQNTHPKSFINEVRALTGIKHRNIVSLYGYCSKAQHSLLVYEYVERGSLSSVLSNEVESKKLDWLKRVNIIKGVAFALSYMHQDCSPPIVHRDIRSSNVLLDSEYEARVADFGIAKILNPDSSNCTALAGTYGYVAPELAYTMKVTQMCDVYSF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="52135" PGL_stop="54398"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52135" e_stop="52284"/>
            <exon e_start="52486" e_stop="52631"/>
            <exon e_start="53014" e_stop="53232"/>
            <exon e_start="53578" e_stop="53790"/>
            <exon e_start="53901" e_stop="54398"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52135" e_stop="52284" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="52486" e_stop="52631" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="52632" i_stop="53013" i_length="382"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="53014" e_stop="53232" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.973">
            <gDNA_intron_boundary i_start="53233" i_stop="53577" i_length="345"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="53578" e_stop="53790" e_length="213"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="53791" i_stop="53900" i_length="110"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="53901" e_stop="54398" e_length="498"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52135" stop="52284"/>
              <exon start="52486" stop="52631"/>
              <exon start="53014" stop="53232"/>
              <exon start="53578" stop="53790"/>
              <exon start="53901" stop="54398"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U313907" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCCTACTCATCACCCTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG : GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAG : AAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTGGCTAAGGAAGCTACTAAGAGATGGACAAAAAGCAACTTTGTTCTTGTGGAGATAGCTTGTACCAGATCTCCTAAAGAACTGGTTTTGGCAAGAGAAGCTTATCATGCTCGTAACAAGAAATCTCTCGAAGAGGACGTTGCTTATCACACTACTGGGGATCACCGCAAG : CTTTTGGTACCTCTTGTGAGCTCCTACCGATATGGGGGAGATGAGGTGGACTTGCGACTTGCTAAAGCAGAATCTAAAGTGCTGCATGAGAAGATCTCCGATAAGGCTTACAGTGACGATGAGGTCATTAGAATTTTAGCCACAAGGAGCAAAGCGCAACTCAATGCTACTTTGAATCATTACAAAGATGAATATGGTGAGGATATCCTAAAG : CAATTAGAAGATGAGGATGAGTTTGTTGCACTGTTAAGGGCCACCATAAAAGGTCTTGTCTACCCCGAGCACTATTTCGTGGAGGTTCTTCGTGATGCAATTAACAGGAGAGGAACAGAGGAAGATCATCTAACCCGAGTTATCGCTACAAGGGCTGAGGTCGATCTGAAGACTATCGCTAACGAGTACCAGAAGAGGGATAGCGTTCCTCTGGGTCGCGCCATTGCCAAAGATACAGGAGGAGATTATGAGAATATGCTGGTGGCTTTACTTGGACAAGAGGAGGAATAAGAAGCGGATTGGCTCACTTCTGTTTTATAATGACCAGAATAAATATGCCATTCTCCCATATATTTCAGAGTTGGCATGTGTTTGATGATTGAGTGTGGTCTGTTTCACATGAGCTTTTAGTCCTTTTCTTCTTGTGAGAAACTTTGAATATGAATCTTTGTGCTGTCTAAAAATGTTCTCTAATGATTTGCATCCACTACAATAATC</gDNA_template>
            <first_frame> S  L  L  I  T  L  H  F  R  V  L  T  I  I  S  S  S  C  P  H  R  E  E  E  K  W  Q  V  L  Q  F  R  Q  K  F  L  Q  S  L  K  T  V  N  N  S  D  L  P  S  K  :  D  G  E  R  M  R  S  *  L  Y  Q  F  W  L  I  E  M  R  L  N  A  N  *  F  D  R  L  M  L  R  L  L  G  K  I  C  L  K  S  W  T  E  N  L  L  M  I  L  R :   N  W  W  *  Y  G  H  W  I  L  Q  N  V  M  P  I  W  L  R  K  L  L  R  D  G  Q  K  A  T  L  F  L  W  R  *  L  V  P  D  L  L  K  N  W  F  W  Q  E  K  L  I  M  L  V  T  R  N  L  S  K  R  T  L  L  I  T  L  L  G  I  T  A  S :   F  W  Y  L  L  *  A  P  T  D  M  G  E  M  R  W  T  C  D  L  L  K  Q  N  L  K  C  C  M  R  R  S  P  I  R  L  T  V  T  M  R  S  L  E  F  *  P  Q  G  A  K  R  N  S  M  L  L  *  I  I  T  K  M  N  M  V  R  I  S  *  S :   N  *  K  M  R  M  S  L  L  H  C  *  G  P  P  *  K  V  L  S  T  P  S  T  I  S  W  R  F  F  V  M  Q  L  T  G  E  E  Q  R  K  I  I  *  P  E  L  S  L  Q  G  L  R  S  I  *  R  L  S  L  T  S  T  R  R  G  I  A  F  L  W  V  A  P  L  P  K  I  Q  E  E  I  M  R  I  C  W  W  L  Y  L  D  K  R  R  N  K  K  R  I  G  S  L  L  F  Y  N  D  Q  N  K  Y  A  I  L  P  Y  I  S  E  L  A  C  V  *  *  L  S  V  V  C  F  T  *  A  F  S  P  F  L  L  V  R  N  F  E  Y  E  S  L  C  C  L  K  M  F  S  N  D  L  H  P  L  Q  *   </first_frame>
            <second_frame>  P  Y  S  S  P  C  I  F  E  S  *  Q  S  Y  P  P  P  A  H  T  E  K  K  K  N  G  K  S  Y  S  S  G  R  S  S  F  S  R  *  R  L  *  T  T  P  I  C  L  Q  R :   M  G  N  E  *  E  V  D  Y  I  N  F  G  S  *  K  C  G  S  T  Q  I  D  S  T  D  L  C  *  D  F  W  G  R  S  A  *  R  V  G  Q  R  T  Y  S  *  F  *   : E  I  G  G  S  M  D  T  G  S  C  R  T  *  C  L  F  G  *  G  S  Y  *  E  M  D  K  K  Q  L  C  S  C  G  D  S  L  Y  Q  I  S  *  R  T  G  F  G  K  R  S  L  S  C  S  *  Q  E  I  S  R  R  G  R  C  L  S  H  Y  W  G  S  P  Q   : A  F  G  T  S  C  E  L  L  P  I  W  G  R  *  G  G  L  A  T  C  *  S  R  I  *  S  A  A  *  E  D  L  R  *  G  L  Q  *  R  *  G  H  *  N  F  S  H  K  E  Q  S  A  T  Q  C  Y  F  E  S  L  Q  R  *  I  W  *  G  Y  P  K   : A  I  R  R  *  G  *  V  C  C  T  V  K  G  H  H  K  R  S  C  L  P  R  A  L  F  R  G  G  S  S  *  C  N  *  Q  E  R  N  R  G  R  S  S  N  P  S  Y  R  Y  K  G  *  G  R  S  E  D  Y  R  *  R  V  P  E  E  G  *  R  S  S  G  S  R  H  C  Q  R  Y  R  R  R  L  *  E  Y  A  G  G  F  T  W  T  R  G  G  I  R  S  G  L  A  H  F  C  F  I  M  T  R  I  N  M  P  F  S  H  I  F  Q  S  W  H  V  F  D  D  *  V  W  S  V  S  H  E  L  L  V  L  F  F  L  *  E  T  L  N  M  N  L  C  A  V  *  K  C  S  L  M  I  C  I  H  Y  N  N  </second_frame>
            <third_frame>   P  T  H  H  P  A  F  S  S  L  D  N  H  I  L  L  L  P  T  Q  R  R  R  K  M  A  S  L  T  V  P  A  E  V  P  S  V  A  E  D  C  E  Q  L  R  S  A  F  K   : G  W  G  T  N  E  K  L  I  I  S  I  L  A  H  R  N  A  A  Q  R  K  L  I  R  Q  T  Y  A  E  T  F  G  E  D  L  L  K  E  L  D  R  E  L  T  H  D  F  E  :  K  L  V  V  V  W  T  L  D  P  A  E  R  D  A  Y  L  A  K  E  A  T  K  R  W  T  K  S  N  F  V  L  V  E  I  A  C  T  R  S  P  K  E  L  V  L  A  R  E  A  Y  H  A  R  N  K  K  S  L  E  E  D  V  A  Y  H  T  T  G  D  H  R  K  :  L  L  V  P  L  V  S  S  Y  R  Y  G  G  D  E  V  D  L  R  L  A  K  A  E  S  K  V  L  H  E  K  I  S  D  K  A  Y  S  D  D  E  V  I  R  I  L  A  T  R  S  K  A  Q  L  N  A  T  L  N  H  Y  K  D  E  Y  G  E  D  I  L  K  :  Q  L  E  D  E  D  E  F  V  A  L  L  R  A  T  I  K  G  L  V  Y  P  E  H  Y  F  V  E  V  L  R  D  A  I  N  R  R  G  T  E  E  D  H  L  T  R  V  I  A  T  R  A  E  V  D  L  K  T  I  A  N  E  Y  Q  K  R  D  S  V  P  L  G  R  A  I  A  K  D  T  G  G  D  Y  E  N  M  L  V  A  L  L  G  Q  E  E  E  *  E  A  D  W  L  T  S  V  L  *  *  P  E  *  I  C  H  S  P  I  Y  F  R  V  G  M  C  L  M  I  E  C  G  L  F  H  M  S  F  *  S  F  S  S  C  E  K  L  *  I  *  I  F  V  L  S  K  N  V  L  *  *  F  A  S  T  T  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52137" stop="52284"/>
                    <exon start="52486" stop="52631"/>
                    <exon start="53014" stop="53232"/>
                    <exon start="53578" stop="53790"/>
                    <exon start="53901" stop="54191"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTHHPAFSSLDNHILLLPTQRRRKMASLTVPAEVPSVAEDCEQLRSAFKGWGTNEKLIISILAHRNAAQRKLIRQTYAETFGEDLLKELDRELTHDFEKLVVVWTLDPAERDAYLAKEATKRWTKSNFVLVEIACTRSPKELVLAREAYHARNKKSLEEDVAYHTTGDHRKLLVPLVSSYRYGGDEVDLRLAKAESKVLHEKISDKAYSDDEVIRILATRSKAQLNATLNHYKDEYGEDILKQLEDEDEFVALLRATIKGLVYPEHYFVEVLRDAINRRGTEEDHLTRVIATRAEVDLKTIANEYQKRDSVPLGRAIAKDTGGDYENMLVALLGQEEE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52150" e_stop="52284"/>
            <exon e_start="52486" e_stop="53064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="52150" e_stop="52284" e_length="135"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.999">
            <gDNA_intron_boundary i_start="52285" i_stop="52485" i_length="201"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="52486" e_stop="53064" e_length="579"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52150" stop="52284"/>
              <exon start="52486" stop="53064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U334665" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGCATTTTCGAGTCTTGACAATCATATCCTCCTCCTGCCCACACAGAGAAGAAGAAAAATGGCAAGTCTTACAGTTCCGGCAGAAGTTCCTTCAGTCGCTGAAGACTGTGAACAACTCCGATCTGCCTTCAAAG : GATGGGGAACGAATGAGAAGTTGATTATATCAATTTTGGCTCATAGAAATGCGGCTCAACGCAAATTGATTCGACAGACTTATGCTGAGACTTTTGGGGAAGATCTGCTTAAAGAGTTGGACAGAGAACTTACTCATGATTTTGAGGTCATTTTCATAATTACAGAATAATTTTTGAATTCTTAGTTGATTATTTGAGTTTCTGAGTTACTCTGTGTGATCAAAGGCAGATCTATGATGTAAAATATATATATACACATTATCCGTATAGTAAAACCATGCTAATTCTGAACCCGATACTCTAGATCATGGATTCAACTTCGATTTTATCAGAGACAGATCTATGAAAAATATGTATTAGTATGTCAAAATATGAAAATGTGTACATATATAATAAAATCATACGTGTTTTGAATTCACTGACTCGAGATCCTGGATTTGCCTTTTGACTTTTTGATCGTATGTGAACTTTGATCAGAAATGATAACCAACACTTGTACTTGTGTTTTCTCTTGAATGTTTCTCGCAGAAATTGGTGGTAGTATGGACACTGGATCCTGCAGAACGTGATGCCTATTTG</gDNA_template>
            <first_frame> L  H  F  R  V  L  T  I  I  S  S  S  C  P  H  R  E  E  E  K  W  Q  V  L  Q  F  R  Q  K  F  L  Q  S  L  K  T  V  N  N  S  D  L  P  S  K  :  D  G  E  R  M  R  S  *  L  Y  Q  F  W  L  I  E  M  R  L  N  A  N  *  F  D  R  L  M  L  R  L  L  G  K  I  C  L  K  S  W  T  E  N  L  L  M  I  L  R  S  F  S  *  L  Q  N  N  F  *  I  L  S  *  L  F  E  F  L  S  Y  S  V  *  S  K  A  D  L  *  C  K  I  Y  I  Y  T  L  S  V  *  *  N  H  A  N  S  E  P  D  T  L  D  H  G  F  N  F  D  F  I  R  D  R  S  M  K  N  M  Y  *  Y  V  K  I  *  K  C  V  H  I  *  *  N  H  T  C  F  E  F  T  D  S  R  S  W  I  C  L  L  T  F  *  S  Y  V  N  F  D  Q  K  *  *  P  T  L  V  L  V  F  S  L  E  C  F  S  Q  K  L  V  V  V  W  T  L  D  P  A  E  R  D  A  Y  L </first_frame>
            <second_frame>  C  I  F  E  S  *  Q  S  Y  P  P  P  A  H  T  E  K  K  K  N  G  K  S  Y  S  S  G  R  S  S  F  S  R  *  R  L  *  T  T  P  I  C  L  Q  R :   M  G  N  E  *  E  V  D  Y  I  N  F  G  S  *  K  C  G  S  T  Q  I  D  S  T  D  L  C  *  D  F  W  G  R  S  A  *  R  V  G  Q  R  T  Y  S  *  F  *  G  H  F  H  N  Y  R  I  I  F  E  F  L  V  D  Y  L  S  F  *  V  T  L  C  D  Q  R  Q  I  Y  D  V  K  Y  I  Y  T  H  Y  P  Y  S  K  T  M  L  I  L  N  P  I  L  *  I  M  D  S  T  S  I  L  S  E  T  D  L  *  K  I  C  I  S  M  S  K  Y  E  N  V  Y  I  Y  N  K  I  I  R  V  L  N  S  L  T  R  D  P  G  F  A  F  *  L  F  D  R  M  *  T  L  I  R  N  D  N  Q  H  L  Y  L  C  F  L  L  N  V  S  R  R  N  W  W  *  Y  G  H  W  I  L  Q  N  V  M  P  I   </second_frame>
            <third_frame>   A  F  S  S  L  D  N  H  I  L  L  L  P  T  Q  R  R  R  K  M  A  S  L  T  V  P  A  E  V  P  S  V  A  E  D  C  E  Q  L  R  S  A  F  K   : G  W  G  T  N  E  K  L  I  I  S  I  L  A  H  R  N  A  A  Q  R  K  L  I  R  Q  T  Y  A  E  T  F  G  E  D  L  L  K  E  L  D  R  E  L  T  H  D  F  E  V  I  F  I  I  T  E  *  F  L  N  S  *  L  I  I  *  V  S  E  L  L  C  V  I  K  G  R  S  M  M  *  N  I  Y  I  H  I  I  R  I  V  K  P  C  *  F  *  T  R  Y  S  R  S  W  I  Q  L  R  F  Y  Q  R  Q  I  Y  E  K  Y  V  L  V  C  Q  N  M  K  M  C  T  Y  I  I  K  S  Y  V  F  *  I  H  *  L  E  I  L  D  L  P  F  D  F  L  I  V  C  E  L  *  S  E  M  I  T  N  T  C  T  C  V  F  S  *  M  F  L  A  E  I  G  G  S  M  D  T  G  S  C  R  T  *  C  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0255I02.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="52152" stop="52284"/>
                    <exon start="52486" stop="52655"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AFSSLDNHILLLPTQRRRKMASLTVPAEVPSVAEDCEQLRSAFKGWGTNEKLIISILAHRNAAQRKLIRQTYAETFGEDLLKELDRELTHDFEVIFIITE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 22 chains have been computed
$ 
$ memory statistics:
$ 90416 bytes spliced alignments in total
$ 12 spliced alignments have been stored
$ 7534 bytes was the average size of a spliced alignment
$ 14920 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1865 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 27 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:24:37
-->
