<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:50:22"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343296" ref_strand="+" ref_description="SGN-U343296        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aatagaacttgaacctctacaatcttcttagtggcttaaataactttcgtctatctatggtggtcttatgcgttatgcaacctgtcagactgaagtcttttattctgttgtaagtttcctattctctgtctctggggaccattctcaccacgatgcttgtatttggtcaccgctgggatgactacgtgtttctttcattcatcattttggaggcattgttcttctgactactattccggtaattctttcggaatttttcaagcaaaacattccagaaaattacgtttctactgtttcttcataattttggagtctgcaaattttagctttcgataactgttggggggggggggagttttttactctctttttcctcacggtagttaaaagtactgaaattctcctctgagcattgaattcctagaaaagatttttttttgcctacttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="1977" stop="921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1677" g_stop="1221" g_length="457"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U343296" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.016" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343296" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1677" e_stop="1221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGAACTTGAACCTCTACAATCTTCTTAGTGGCTTAAATAACTTTCGTCTATCTATGGTGGTCTTATGCGTTATGCAACCTGTCAGACTGAAGTCTTTTATTCTGTTGTAAGTTTCCTATTCTCTGTCTCTGGGGACCATTCTCACCACAATGCTTGTATTTGGTCACCGCTGGGATGACTACGTGTTTCTTTCATTCATCATTTTGGAGGCATTGTTCTTCTGACTACTATTCCGGTAATTCTTTCAGAATTTTTCAAGCAAAACATTCCAGAAAATTACGTTTCTACTGTTTCTTCATAATTTTGGAGTCTCCAAATTTTAGCTTTCGATAACTGTTTGGGGGGGGGGGGGGGGGGAGTTTTTTACTCTCTTTTTCCTCACGGTAGTTAAGAGTACTGAGATTCTCCTCTGAGCATTGAATTCCTAGAAAAGATTTTTTTTTGCCTACTTTTC</genome_strand>
        <mrna_strand>AATAGAACTTGAACCTCTACAATCTTCTTAGTGGCTTAAATAACTTTCGTCTATCTATGGTGGTCTTATGCGTTATGCAACCTGTCAGACTGAAGTCTTTTATTCTGTTGTAAGTTTCCTATTCTCTGTCTCTGGGGACCATTCTCACCACGATGCTTGTATTTGGTCACCGCTGGGATGACTACGTGTTTCTTTCATTCATCATTTTGGAGGCATTGTTCTTCTGACTACTATTCCGGTAATTCTTTCGGAATTTTTCAAGCAAAACATTCCAGAAAATTACGTTTCTACTGTTTCTTCATAATTTTGGAGTCTGCAAATTTTAGCTTTCGATAACTG-TT------GGGGGGGGGGGGAGTTTTTTACTCTCTTTTTCCTCACGGTAGTTAAAAGTACTGAAATTCTCCTCTGAGCATTGAATTCCTAGAAAAGATTTTTTTTTGCCTACTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324273" ref_strand="+" ref_description="SGN-U324273        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G24560.1 | Symbol: None | ubiquitin-specific protease 16, putative (UBP16), similar to ubiquitin-specific protease 16 GI:11993477 (Arabidopsis thaliana) | chr4:12679220-12684949 REVERSE | Aliases: F22K18.240, F22K18_240 (evalue: 3e-50, score=195) genbank/nr: gi|11993477|gb|AAG42757.1| ubiquitin-specific protease 16 [Arabidopsis thaliana](evalue: 2e-48, score=195)">
      <seq>caagtaccgatgtggcagatgtaaatcgtatgagaaggctaagaaaaagttaaaagtggtggaggctcctaatgtcctcacagttgcattgaagagatttcagtcaggtaaatttgggaagctaaacaagacaatcaaattccctgagtttttgaacctggcaccatatatgagtgggacaagtgataagtcaccagtttatcagctgtatggagttgtggttcacctggacgtaatgaatgctgcattttctggtcactatgtgtgttacgtgaggaactttcagaacaagtggtataaagttgatgatagttcggttaaatctgtggaactagaaagagtcttgtcgaagggagcgtacatgcttctttattcaaggtgctcgccacgggccccgaggataatgaggagtctgacaattcctcgtgatccaaggagatcaaagcaactgacttgtaaatcaagatcccatacaagaagtccatgggactcttcacatggcgattcaactagtaaaacctgcaacggatgttcttatcctagtcatacaagtgtgaggcctattaggtctatatttgaggaggactcttcgagtgaacaatcatctttcttctctgagcttggttcttgcagtacagacagcactaacagggattcaacgagcacagatgacttaaatattgatatatttggcgactctggggtctgttggaatagcctctggaggagttcatctgattctgacacatcctcatcctcatcttctccttcccctctgtactcaaggcattcaccccttgctgatttggaccgttatgcttctgctcgtgaagagaccagctgcagcggcaacccagaaacagctggggatggtcagggtttttggacagggttacatgatcgtaacagttatactggcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="21112" stop="23135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21427" g_stop="21511" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="103" r_length="85" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21512" i_stop="21622" i_length="111">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21623" g_stop="21835" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="316" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21836" i_stop="22181" i_length="346">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22182" g_stop="22276" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="411" r_length="95" r_score="0.758"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22277" i_stop="22326" i_length="50">
            <donor d_prob="0.985" d_score="0.53"/>
            <acceptor a_prob="0.000" a_score="0.39"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22327" g_stop="22835" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="921" r_length="510" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U324273" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>902</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21427" e_stop="21511"/>
          <exon e_start="21623" e_stop="21835"/>
          <exon e_start="22182" e_stop="22276"/>
          <exon e_start="22327" e_stop="22835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTAAATCGTATGAGAGGGCTAAGAAAAAGTTAAAAGTGGTGGAGGCTCCTAATGTCCTCACTGTTGCATTGAAGAGATTTCAGGTACTGTTTTGAATGAAGTGTTGTCTCCTTCAGTTTTTGATATTGATTGAAGGAAATACTTCCTCGTATCTGCATTTTGTTTCCAATTGCTCACTGTCTGTAGTTTTGCAGTCAGGTAAATTTGGGAAGCTAAACAAGACAATCAAATTCCCTGAGTTTTTGAACCTGGCACCATATATGAGTGGGACAAGTGATAAGTCACCAGTTTATCAGCTGTATGGAGTTGTGGTTCACCTGGACGTAATGAATGCTGCATTTTCTGGTCACTATGTGTGTTACGTGAGGAACTTTCAGAACAAGTGGTATAAAGTTGATGATAGTTCGGTATGTCTCCTAAAGAACTTTTACTTATAATTCACATTTTAAAACTTATTTTACACCTCATTTTATCTTTCTGAATTTCATCCATTGATTGTATACTTTTCTCCCTTCACTTCTGGGCTTTGGGTATTGGTAAGCTTATGAGAAATTAGGCATTTGTTGTCACAAAGTGGTTGTTCCTTTCGGCTTAGAACTACTAAAAGTGCTCTTGATGTGCGTTAATGTGTTCTGTGATGATGAGACTGTGATACTCCATTTCCTCTCGATTCTGCTTCATGCATAGCACACAACATGATGTTTCTTCCATGGTCTTTTTGAGGTTTTGATGTGGTCTTTGTCATATTTGTAGGTTAAATCTGTGGAACTAGAAAGAGTCTTGTCGAAGGGAGCGTACATGCTTCTTTATTCAAGGT-AAAATTATAGACGCATCTCCTTCTAGTTGAGGTATGCATTCTTCCATCTTTATTGGTTGTAGCTGACATTTCCTTTTTTCCTTTTTTAGGTGCTCGCCACGGGCCCCGAGGATAATGA-GGAGTCTGAAATCAAGATCCCATACAAGAAGTCCATGGGACTCTTCACATGGCGACTCAACTAGTAAAACTTGCAAGGGATGTTCTTATCCTAGTCATACAAGTGTGAGGCCTATTAGGTCTATATTTGAGGAGGACTCTTCGAGTGAACAATCATCTTTCTTCTCTGAGCTTGGTTCTTGCAGTACAGACAGCACTAACAGGGATTCAACGAGCACAGATGACTTAAATATTGATATATTTGGCGACTCTGGGGTCTGTTGGAATAGCCTCTGGAGGAGTTCATCTGATTCTGACACATCCTCATCCTCATCTTCTCCTTCCCCTCTGTACTCGAGGCATTCACCCCTTGCTGATTTGGACCGTTATGCTTCTGCTCGTGAAGAGACCAGTTGCAGCGTCAACCCAGAAACAGCTGGGGATGGTCAGGGTTTTTGGACAGGGTTACGTGATCGTAACAGTTATACTGGCGT</genome_strand>
        <mrna_strand>ATGTAAATCGTATGAGAAGGCTAAGAAAAAGTTAAAAGTGGTGGAGGCTCCTAATGTCCTCACAGTTGCATTGAAGAGATTTCAG...............................................................................................................TCAGGTAAATTTGGGAAGCTAAACAAGACAATCAAATTCCCTGAGTTTTTGAACCTGGCACCATATATGAGTGGGACAAGTGATAAGTCACCAGTTTATCAGCTGTATGGAGTTGTGGTTCACCTGGACGTAATGAATGCTGCATTTTCTGGTCACTATGTGTGTTACGTGAGGAACTTTCAGAACAAGTGGTATAAAGTTGATGATAGTTCG..........................................................................................................................................................................................................................................................................................................................................................GTTAAATCTGTGGAACTAGAAAGAGTCTTGTCGAAGGGAGCGTACATGCTTCTTTATTCAAGGTGCTCGCCACGGGCCCCGAGGATAAT-GAGGAG..................................................TCTGACAATTCCTCGTGATCCAAGGAGATCAAAGCAACTGACTTGTAAATCAAGATCCCATACAAGAAGTCCATGGGACTCTTCACATGGCGATTCAACTAGTAAAACCTGCAACGGATGTTCTTATCCTAGTCATACAAGTGTGAGGCCTATTAGGTCTATATTTGAGGAGGACTCTTCGAGTGAACAATCATCTTTCTTCTCTGAGCTTGGTTCTTGCAGTACAGACAGCACTAACAGGGATTCAACGAGCACAGATGACTTAAATATTGATATATTTGGCGACTCTGGGGTCTGTTGGAATAGCCTCTGGAGGAGTTCATCTGATTCTGACACATCCTCATCCTCATCTTCTCCTTCCCCTCTGTACTCAAGGCATTCACCCCTTGCTGATTTGGACCGTTATGCTTCTGCTCGTGAAGAGACCAGCTGCAGCGGCAACCCAGAAACAGCTGGGGATGGTCAGGGTTTTTGGACAGGGTTACATGATCGTAACAGTTATACTGGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U324274" ref_strand="+" ref_description="SGN-U324274        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT4G24560.1 | Symbol: None | ubiquitin-specific protease 16, putative (UBP16), similar to ubiquitin-specific protease 16 GI:11993477 (Arabidopsis thaliana) | chr4:12679220-12684949 REVERSE | Aliases: F22K18.240, F22K18_240 (evalue: 6e-48, score=188) genbank/nr: gi|11993477|gb|AAG42757.1| ubiquitin-specific protease 16 [Arabidopsis thaliana](evalue: 5e-46, score=188)">
      <seq>ttaaaagtggtggaggctcctaatgtcctcactgttgcattgaagagatttcagtcaggtaaatttgggaagctaaacaagacaatcaaattccctgagtttttgaacctggcaccatatatgagtgggacaagtgataagtcaccagtttatcagctgtatggagttgtggttcacctggacgtaatgaatgctgcattttctggtcactatgtgtgttacgtgaggaactttcagaacaagtggtataaagttgatgatagttcggttaaatctgtggaactagaaagagtcttgtcgaagggagcgtacatgcttctttattcaaggtgctcgccacgggccccgaggataatgaggagtctgaaatcaagatcccatacaagaagtccatgggactcttcacatggcgactcaactagtaaaacttgcaagggatgttcttatcctagtcatacaagtgtgaggcctattaggtctatatttgaggaggactcttcgagtgaacaatcatctttcttctctgagcttggttcttgcagtacagacagcactaacagggattcaacgagcacagatgacttaaatattgatatatttggcgactctggggtctgttggaatagcctcaggaggagttcatctgattctgacacatcctcatcctcatcttctccttcccctctgtactcgaggcattcaccccttgctgatttggaccgttatgcttctgctcgtgaagagaccagttgcagcgtcaacccagaaacagctggggatggtcagggtttttggacagggttacatgatcgtaacagttatactggcgttccagaaaccagcggaaggacaccacctccctgtcccaacccaattaaacattgtagaaaagtagttagtagtcatagtagtagtaataccgactccagtagattaggtcgggttaacccttgtgacaagtggaaatttcctgtaacttgtagagatcgatgaggggaaaaggtcccttttggacatcggtgttataaagtatttttgtattttagagggagggaaataaaagaatttgggaggcacagggggtttagggagtggttgtatgtattatatacattggctattagctgtgttcaaaacaacaaggaggccataattttgtcactcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="21158" stop="55445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21458" g_stop="21511" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="21512" i_stop="21622" i_length="111">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.900" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21623" g_stop="21835" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="267" r_length="213" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21836" i_stop="22181" i_length="346">
            <donor d_prob="0.965" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22182" g_stop="22243" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="329" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22244" i_stop="22334" i_length="91">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22335" g_stop="23169" g_length="835"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="1164" r_length="835" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="23170" i_stop="25391" i_length="2222">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.62"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25392" g_stop="25445" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1165" r_stop="1218" r_length="54" r_score="0.630"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U324274" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>1218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U324274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21458" e_stop="21511"/>
          <exon e_start="21623" e_stop="21835"/>
          <exon e_start="22182" e_stop="22243"/>
          <exon e_start="22335" e_stop="23169"/>
          <exon e_start="25392" e_stop="25445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAGTGGTGGAGGCTCCTAATGTCCTCACTGTTGCATTGAAGAGATTTCAGGTACTGTTTTGAATGAAGTGTTGTCTCCTTCAGTTTTTGATATTGATTGAAGGAAATACTTCCTCGTATCTGCATTTTGTTTCCAATTGCTCACTGTCTGTAGTTTTGCAGTCAGGTAAATTTGGGAAGCTAAACAAGACAATCAAATTCCCTGAGTTTTTGAACCTGGCACCATATATGAGTGGGACAAGTGATAAGTCACCAGTTTATCAGCTGTATGGAGTTGTGGTTCACCTGGACGTAATGAATGCTGCATTTTCTGGTCACTATGTGTGTTACGTGAGGAACTTTCAGAACAAGTGGTATAAAGTTGATGATAGTTCGGTATGTCTCCTAAAGAACTTTTACTTATAATTCACATTTTAAAACTTATTTTACACCTCATTTTATCTTTCTGAATTTCATCCATTGATTGTATACTTTTCTCCCTTCACTTCTGGGCTTTGGGTATTGGTAAGCTTATGAGAAATTAGGCATTTGTTGTCACAAAGTGGTTGTTCCTTTCGGCTTAGAACTACTAAAAGTGCTCTTGATGTGCGTTAATGTGTTCTGTGATGATGAGACTGTGATACTCCATTTCCTCTCGATTCTGCTTCATGCATAGCACACAACATGATGTTTCTTCCATGGTCTTTTTGAGGTTTTGATGTGGTCTTTGTCATATTTGTAGGTTAAATCTGTGGAACTAGAAAGAGTCTTGTCGAAGGGAGCGTACATGCTTCTTTATTCAAGGTAAAATTATAGACGCATCTCCTTCTAGTTGAGGTATGCATTCTTCCATCTTTATTGGTTGTAGCTGACATTTCCTTTTTTCCTTTTTTAGGTGCTCGCCACGGGCCCCGAGGATAATGAGGAGTCTGAAATCAAGATCCCATACAAGAAGTCCATGGGACTCTTCACATGGCGACTCAACTAGTAAAACTTGCAAGGGATGTTCTTATCCTAGTCATACAAGTGTGAGGCCTATTAGGTCTATATTTGAGGAGGACTCTTCGAGTGAACAATCATCTTTCTTCTCTGAGCTTGGTTCTTGCAGTACAGACAGCACTAACAGGGATTCAACGAGCACAGATGACTTAAATATTGATATATTTGGCGACTCTGGGGTCTGTTGGAATAGCCTCTGGAGGAGTTCATCTGATTCTGACACATCCTCATCCTCATCTTCTCCTTCCCCTCTGTACTCGAGGCATTCACCCCTTGCTGATTTGGACCGTTATGCTTCTGCTCGTGAAGAGACCAGTTGCAGCGTCAACCCAGAAACAGCTGGGGATGGTCAGGGTTTTTGGACAGGGTTACGTGATCGTAACAGTTATACTGGCGTTCCAGAAACCAGCGGAAGGACACCACCTCTCTGTCCCAACCCAACTAAACATTGTAGAAAAGTAGTTAGTAGTCATAGTAGTAGTAATACCGACTCCAGTAGATTAGGTCGGGTTAACCCTTGTGACAAGTCGAAATCTCCTGTAACTTGTAGAGATCGATGAGGGGAAAAGGTGCCTTCTGGACATCGGTGTTATAAAGTATTTTTGTATTCTAGAGGGAGGGAAATAAAAGAATTTGGGAGGCACAGGGGGTTTAGGGAGTGGTTGTATGTATTATATACATTGGCTATTAGCTGTGTTCAAAACAACAAGGAGGCCATAATTTTGTCACTCTCTTCCCCTTTAATATAATCTATTCTCCATTTCCTGTAATCCATTGTTTATCAAATGTAGACATACAAGATCTCCTCTACTATCATCCTCGTCCAACAACGCTCTCTAACAAAGGCTCTCTAACAAAGGCGATTCTGTAGTCTGAACATTGGTAATAGTTATTTTAATACATGCATAACTCTACGCTACAATCGGAACATCCCCTAGGTGGGGACAGAAATTGTCAAAGGGAAGATTCCAGTTCAACTTCAACAACTTTGGTTTGGTTCATCTCACATAGACAAATTTGTATTAAGGGGCCTACAAAAGAAGGTAGCAGAAGATTGACATGATGGGCCAAAGGGAATGGGATAGGAAGAGAAGAAAACAAACAAGCAACTTGGCTAAGCATTAATAATATATTGTCACCTACACACACAGTAAGTACTTTTGGGTTATATACTGCTCTACTTTGACCACATTTATTTATTTACCCACCACTTTTAACTTTTGTCTCCAATCTTAGCTAAATGTCAGAATCCACATTCTTTTTCAACTTAGAATTAACAATTAACAGTGTTTAATAAATTCTCTATTGGTTGGTCGAGCATTGTCCTTTTTTTCTTACAATTAAAGGTAGGGGCAAAGGGATTGTGAAATCGAGAGTTGAATTATGTGAAAGTTCTGATAGTCAATCAATTGAGCTACTAAAATTTATTGCTCAATTATCCTTTCATATTAATAGTCGTAAACATTATATTTGTAGTTTCTTATTCTTCGATTTCTATTATTATTTACTTATTAGACTATACTACTTCCTATTATGACTCACATTTTTTTCACATATTCTAAGTATGTGGCTTTGGATCTTTTTTTCCTATAGAAATCTATCGAGCCTTAGCTCTGCTTCTGTCACACTCATTAAAAACCTATGTATATATTTAGCCTCCTTTCGTTATTATTCCATCAACAGCTTGAGAAGTCTTTTACATAAATAATGATTCCGTAGATAATAATGGATGTTTTTAGTTTAATTTCATATTCAGATGAAAAAGAGATGAATGATCTTCTTATATAGAATTGGAAAATCTCTCAGCATGAGCTAGTTTTGAAGGTTGAGTTTTTTGATTCAAAATTTATTTCTTTACGTAATATCAGAGCCAAAGCTAGACCTGGGTTCAATACGGAGGGCATGGACCAAGAGGAGGGTTGTGAATATACTCCAAAATTAATTTCTTTTATAAAGTTACTTTAAACTGAAATTAAAGTTGACGGTGGAATTATTTTTAATTTTTTTTACATGAAGAATATATTTTAAAAAGGAGATAGATGCATGCTGAAGTAAATGAGAATATATATATAATGAAAAAGACTAGCTGAGACGTAATGACAGAACTCCATTTTTGGTGGTGAGTTTGTCTAACAAAGGACCAACAACTTTCTTATATTCTCATGTTCCATGTTTTTTTATATGTATATAAATAATAGGCCTAAATAATATACATAGAACCCAAATCTTTGTCCCTATCTTCATTCTTCTTAATTTTAAAGGATAAAAGGATTATATCATCAAACGGTATGTAGATATCTTCCGTTATATTTTAAGGATATTGGTGTTTTTTTTCCAAAAACTAGAGCATAATATGCCCTTTATACTAATGGATATACACGCATCATAATCTTATCCACCGATAGATATTTAGTAAATATTGGATCGACGGATAAGATTGTGCCACGTGTCTCTATTTAGTCTTTTGTTAGTGCGAATGGCATATATGCTCTAGTTTTTAGGGCACCACACCAGTGTTTGCAAAAGAATGATAGAGGGTATCTGCGTACCATTTATAATAATTTAGGGATACATTTATCCTTTTTCCCAATTTTTTTTTTTAAAAAAACTTAAATGAACACTCAAGTTCAAGGTGATTTCTTTATTTGTCGGCAGAAAGAATTACTCGATACTTGTGTTAATAACAAATTCAAAAATTCGAAAAAAAAAACATATTATTATGAATAGAAGGAGCTAGGATGTTTCTTTGAAAAATCCGTTGATAATTTAGGACTAATTTTAAGCGTTGAAAATGTTTGCAACACAAATTTTCAACAAAATATATTAGGTGATTTCTTTTGTCTATTCAAGCTTTGTGATTATCCATTACAACTGTCTTTAAATATGAAATGACAAATAATCAATGAAATAATTGAAACATATACAAGTTAATCTAATCATCATTGTCATATAAAAATAATTAATATAAAATAATAAATCGTCAATAAAATAAGTAAAATATATACAA</genome_strand>
        <mrna_strand>TTAAAAGTGGTGGAGGCTCCTAATGTCCTCACTGTTGCATTGAAGAGATTTCAG...............................................................................................................TCAGGTAAATTTGGGAAGCTAAACAAGACAATCAAATTCCCTGAGTTTTTGAACCTGGCACCATATATGAGTGGGACAAGTGATAAGTCACCAGTTTATCAGCTGTATGGAGTTGTGGTTCACCTGGACGTAATGAATGCTGCATTTTCTGGTCACTATGTGTGTTACGTGAGGAACTTTCAGAACAAGTGGTATAAAGTTGATGATAGTTCG..........................................................................................................................................................................................................................................................................................................................................................GTTAAATCTGTGGAACTAGAAAGAGTCTTGTCGAAGGGAGCGTACATGCTTCTTTATTCAAG...........................................................................................GTGCTCGCCACGGGCCCCGAGGATAATGAGGAGTCTGAAATCAAGATCCCATACAAGAAGTCCATGGGACTCTTCACATGGCGACTCAACTAGTAAAACTTGCAAGGGATGTTCTTATCCTAGTCATACAAGTGTGAGGCCTATTAGGTCTATATTTGAGGAGGACTCTTCGAGTGAACAATCATCTTTCTTCTCTGAGCTTGGTTCTTGCAGTACAGACAGCACTAACAGGGATTCAACGAGCACAGATGACTTAAATATTGATATATTTGGCGACTCTGGGGTCTGTTGGAATAGCCTCAGGAGGAGTTCATCTGATTCTGACACATCCTCATCCTCATCTTCTCCTTCCCCTCTGTACTCGAGGCATTCACCCCTTGCTGATTTGGACCGTTATGCTTCTGCTCGTGAAGAGACCAGTTGCAGCGTCAACCCAGAAACAGCTGGGGATGGTCAGGGTTTTTGGACAGGGTTACATGATCGTAACAGTTATACTGGCGTTCCAGAAACCAGCGGAAGGACACCACCTCCCTGTCCCAACCCAATTAAACATTGTAGAAAAGTAGTTAGTAGTCATAGTAGTAGTAATACCGACTCCAGTAGATTAGGTCGGGTTAACCCTTGTGACAAGTGGAAATTTCCTGTAACTTGTAGAGATCGATGAGGGGAAAAGGTCCCTTTTGGACATCGGTGTTATAAAGTATTTTTGTATTTTAGAGGGAGGGAAATAAAAGAATTTGGGAGGCACAGGGGGTTTAGGGAGTGGTTGTATGTATTATATACATTGGCTATTAGCTGTGTTCAAAACAACAAGGAGGCCATAATTTTGTCACTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331302" ref_strand="+" ref_description="SGN-U331302        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 | chr5:20209825-20210655 FORWARD | Aliases: K2I5.6, K2I5_6(evalue: 7e-27, score=117) genbank/nr: gi|15240535|ref|NP_199781.1| hypothetical protein [Arabidopsis thaliana] gi|8978267|dbj|BAA98158.1| contains similarity to AT-hook DNA-binding protein~gene_id:K2I5.6 [Arabidopsis thaliana](evalue: 5e-25, score=117)">
      <seq>acacaaacactatgtttggtaaaattcatcaccaccaccaaaatcaatctcctcaatcttttcaacaccaccaccaccttcaccagcagcagcagcagcagcaccaccacaattttcaacatccaccgtttcagctgacgcgagaatgccagacttcggaggaagcagacagtactgcgaacagaaacgatactttaaaccctcaaccggttaatgcagtagcaccgccgtcgcagcagcagcaacccgccggtaacgacggtgctacgattgaggttgttcgccgtccccgtggccggccgcctggttcgaaaaacaaacctaaaccacctgttatcattactcgcgatgcggaaccatctatgagtccttatatacttgaaattccgactggtgttgatataatcaactctgttaccaaattctgtagaaaacggaatatgggtctctgtgttcttaacggttcaggtactgtaacgaatgtaactctccggcaaccatcaactacgccggtttcgacggttacctttcatggcagattcgatatattgtcgatttctgccactgttgttcagccgaatgcgaatattccatcgaacaatgggatagcaaatgggttcacaatttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="34487" stop="35821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34787" g_stop="35254" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35255" i_stop="35358" i_length="104">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="35359" g_stop="35521" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="631" r_length="163" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U331302" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34787" e_stop="35254"/>
          <exon e_start="35359" e_stop="35521"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAACACTATGTTTGGTAAAATTCATCATCACCACCAAAATCAATCTCCTCAATCTTTTCAACACCACCACCACCTTCACCAGCAGCAGCAGCAGCAGCACCACCACAATTTTCAACATCCACCGTTTCAGCTGACGCGAGAATGCCAAACTTCGGAGGAAGCAGACAGTACTGCGAACAGAAACGATACTTTAAACCCTCAACCGGTTAATGCAGTAGCACCGCCGTCGCAGCAGCAGCAACCCGCCGGTAACGACGGTGCTACGATTGAGGTTGTTCGCCGTCCCCGTGGCCGGCCGCCTGGTTCGAAAAACAAACCTAAACCACCTGTTATCATTACTCGCGATGCGGAACCATCTATGAGTCCTTATATACTTGAAATTCCGACTGGTGTTGATATAATCAACTCTGTTACCAAATTCTGTAGAAAACGGAATATGGGTCTTTGTGTTCTTAACGGTTCAGGTAATTTTTTTTTTTGATAATCGGAATCTGAATCATTACTATCTCATCAATTGACAGATAATTGCAAAATGTAACAATATTTTTTTTTGGATTTTTTGAAAAAGGTACTGTAACGAATGTAACTCTCCGGCAACCATCAACTACGCCGGTTTCGACGGTTACCTTTCATGGCAGATTCGATATATTGTCGATTTCTGCCACTGTTGTTCAGCCGAATGCGAATATTCCATCGAACAATGGGATAGCAAATGGGTTCACAATTTCATT</genome_strand>
        <mrna_strand>ACACAAACACTATGTTTGGTAAAATTCATCACCACCACCAAAATCAATCTCCTCAATCTTTTCAACACCACCACCACCTTCACCAGCAGCAGCAGCAGCAGCACCACCACAATTTTCAACATCCACCGTTTCAGCTGACGCGAGAATGCCAGACTTCGGAGGAAGCAGACAGTACTGCGAACAGAAACGATACTTTAAACCCTCAACCGGTTAATGCAGTAGCACCGCCGTCGCAGCAGCAGCAACCCGCCGGTAACGACGGTGCTACGATTGAGGTTGTTCGCCGTCCCCGTGGCCGGCCGCCTGGTTCGAAAAACAAACCTAAACCACCTGTTATCATTACTCGCGATGCGGAACCATCTATGAGTCCTTATATACTTGAAATTCCGACTGGTGTTGATATAATCAACTCTGTTACCAAATTCTGTAGAAAACGGAATATGGGTCTCTGTGTTCTTAACGGTTCAG........................................................................................................GTACTGTAACGAATGTAACTCTCCGGCAACCATCAACTACGCCGGTTTCGACGGTTACCTTTCATGGCAGATTCGATATATTGTCGATTTCTGCCACTGTTGTTCAGCCGAATGCGAATATTCCATCGAACAATGGGATAGCAAATGGGTTCACAATTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325022" ref_strand="+" ref_description="SGN-U325022        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNA-binding protein-related, contains Pfam domain PF03479: Domain of unknown function (DUF296), found in AT-hook motifs Pfam:PF02178 | chr5:20209825-20210655 FORWARD | Aliases: K2I5.6, K2I5_6(evalue: 2e-17, score=85.9) genbank/nr: gi|15240535|ref|NP_199781.1| hypothetical protein [Arabidopsis thaliana] gi|8978267|dbj|BAA98158.1| contains similarity to AT-hook DNA-binding protein~gene_id:K2I5.6 [Arabidopsis thaliana](evalue: 2e-15, score=85.9)">
      <seq>gatttctgccggtgttgttcaggcgaatgcgaatattccatcgaacaatgggataacaaatgggttcacaatttcattagcaggtccacaaggtcaagtagtaggtggtggtgtagttgggcctctagttacggccgggacggtttacctaatcgctgcaacttttaacggtccgtcttttcatcggttaccggcggaggaggaattagcaaggaataattctggtggtggaaatgaagatggatcgtctccgcagcagcatgcggaggtttccggtggaggagatggtggacatccaccgtcaacgacggcgccggaaagttgtgggatgtcgatgtacagctgtcatttgccgtcggatgtgatatgggctcctactgctagacaaccacaaccaccgccttactgaaaattcttgggatctgtgctctcttatgctgtcaaattttcttcactaatctgggtttttgtaatttgggacttttttttttttagttatttatttagttgactttagtttatttttgttatcttttatgttaatcaaaaaacaaatgtactgtggattagtccttttttaaaaaaaaaaatttgttgtttattttagtagggaaagaggagaatgttttggtactaattgaagtagtattattgttgaaacacattagccatgagatattttattgattactcaaaatattatttcgatcatatttctatctcgtgaaaaanaaaaaaaaanaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="35144" stop="36471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35444" g_stop="36172" g_length="729"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="729" r_length="729" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="730" polyA_stop="741"/>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U325022" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>729</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35444" e_stop="36172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTCTGCCACTGTTGTTCAGCCGAATGCGAATATTCCATCGAACAATGGGATAGCAAATGGGTTCACAATTTCATTAGCAGGTCCACAAGGTCAAGTAGTAGGTGGTGGTGTAGTTGGGCCTCTAGTTACGGCCGGGACGGTTTACCTAATCGCTGCAACTTTTAACGGTCCGTCTTTTCATCGGTTACCGGCGGAGGAGGAATTAGCAAGGAATAATTCTGGTGGTGGAAATGAAGATGGATCGTCTCCGCAGCAGCATGCGGAGGTTTCCGGTGGAGGAGATGGTGGACATCCACCGTCAACGACGGCGCCGGAAAGTTGTGGGATGTCGATGTACAGCTGTCATTTGCCGTCGGATGTGATATGGGCTCCTACTGCTAGACAACCACAACCACCGCCTTACTGAAAATTCTTGGGATCTGTGCTCTCTTATGCTGTCAAATTTTCTTCACTAATCTGGGTTTTTGTAATTTGGGACTTTTTTTTTTTTAGTTATTTATTTAGTTGACTTTAGTTTATTTTTGTTATCTTTTATGTTAATCAAAAAACAAATGTACTGTGGATTAGTCCTTTTTTTTTAAAAAAAATTTGTTGTTTATTTTAGTAGGGAAAGAGGAGAATGTTTTGGTACTAATTGAAGTAGTATTATTGTTGAAACACATTAGCCATGAGATATTTTATTGATTACTCAAAATATTATTTCGATCATATTTCTATTTCGTGAAG</genome_strand>
        <mrna_strand>GATTTCTGCCGGTGTTGTTCAGGCGAATGCGAATATTCCATCGAACAATGGGATAACAAATGGGTTCACAATTTCATTAGCAGGTCCACAAGGTCAAGTAGTAGGTGGTGGTGTAGTTGGGCCTCTAGTTACGGCCGGGACGGTTTACCTAATCGCTGCAACTTTTAACGGTCCGTCTTTTCATCGGTTACCGGCGGAGGAGGAATTAGCAAGGAATAATTCTGGTGGTGGAAATGAAGATGGATCGTCTCCGCAGCAGCATGCGGAGGTTTCCGGTGGAGGAGATGGTGGACATCCACCGTCAACGACGGCGCCGGAAAGTTGTGGGATGTCGATGTACAGCTGTCATTTGCCGTCGGATGTGATATGGGCTCCTACTGCTAGACAACCACAACCACCGCCTTACTGAAAATTCTTGGGATCTGTGCTCTCTTATGCTGTCAAATTTTCTTCACTAATCTGGGTTTTTGTAATTTGGGACTTTTTTTTTTTTAGTTATTTATTTAGTTGACTTTAGTTTATTTTTGTTATCTTTTATGTTAATCAAAAAACAAATGTACTGTGGATTAGTCCTTTTTTAAAAAAAAAAATTTGTTGTTTATTTTAGTAGGGAAAGAGGAGAATGTTTTGGTACTAATTGAAGTAGTATTATTGTTGAAACACATTAGCCATGAGATATTTTATTGATTACTCAAAATATTATTTCGATCATATTTCTATCTCGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321995" ref_strand="-" ref_description="SGN-U321995        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G24550.2 | Symbol: None | clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family | chr4:12675775-12679074 FORWARD | Aliases: None (evalue: 3e-39, score=159) genbank/nr: PREDICTED(evalue: 4e-38, score=162)">
      <seq>ttttttttttttctgtaacttcttctttctttttgtattgtagttttacaattatgttgataactcagacttcttctcctctattaggccgaagttatcttgaaaatccgtgctgaatttccttcggacatcactgcaaatacaatcttggtacaaatgccgctgcctacatatacaagcaggtagtctttacttttacttctgctccagagcacatgcatggattttaccttttcttttcctggcatctttttgtggtattctcgtcatcaactaggcactctggtactttctaactaatcgtgctttttgagggagaaagataggtgaaagtttctgtgtgagttattgcctgtttgtgtgagagaaagtggacatctatttatttattatgaagcaattggttctgatgtgactctgtacttctcttttagcaatttgaattgaagcaataattaacagatacaaacaactctccattctttgcaatcttttatggttgatgaagtatttccgactcttaatttatcctgcgaagttcattgctttcatatttttggagtatttattatgttgaaggtgcaccaaagtggtaactgattttgtctaccctcactaatttttagagtaagctttgagttggaacctggaacagttggccaaacaactgattttaaggaatccaataagaggcttgagtggaatttgaaaaaggtttttggtggatcagaccctacattacgtgccaaggtaacattttcccaagggtcccctggaaatttccccaaggaagctggacccgggggcctgaccttcccaatcccaatgtacaatccttcaagggttcaggtgaaatttttgcaaattgcaaagaagtcaaagacatataatccttttcggggggggagatatgggactcaggccaattcatatgttgctcgtatatgatggctgttgagaccttttccccccttacccccctcggtttcttttttttttttttcactttttcctaaacattttttgccccccccccgttggggggttttgagttttaaattgttttttttaactttggttttgggctttcaaagtttgtactatattttttaaaaaaagagggggggctttttggtgattttccttttaaaaaattgggcaactaatggaaaattttgattatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="43499" stop="38804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43199" g_stop="42496" g_length="704"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="714" r_length="705" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42495" i_stop="42392" i_length="104">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42391" g_stop="42331" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="715" r_stop="775" r_length="61" r_score="0.869"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42330" i_stop="42220" i_length="111">
            <donor d_prob="0.914" d_score="0.88"/>
            <acceptor a_prob="1.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42219" g_stop="42146" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="776" r_stop="849" r_length="74" r_score="0.892"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="42145" i_stop="41433" i_length="713">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41432" g_stop="41096" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="850" r_stop="1188" r_length="339" r_score="0.875"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41095" i_stop="39166" i_length="1930">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.738" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="39165" g_stop="39116" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1189" r_stop="1238" r_length="50" r_score="0.760"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U321995" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>1226</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321995" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43199" e_stop="42496"/>
          <exon e_start="42391" e_stop="42331"/>
          <exon e_start="42219" e_stop="42146"/>
          <exon e_start="41432" e_stop="41096"/>
          <exon e_start="39165" e_stop="39116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTGTAACTTCTTCTTTCTTTTCATATTGTAGTTTTACAATTATGTTGATAACTCAGACTTCTTCTCCTCTATTAGGCTGAAGTTATCTTGAAAATCCGTGCTGAATTTCCTTCGGACATTACTGCAAATACAATCTTGGTACAAATGCCGCTGCCTACATATACAAGCAGGTAGTCTTTACTTCTACTTCTGCTCCAGAGCACATGCATGGATTTTACCTTTTCTTTTCCTGGCATTTTTTTGTGGTATTCTCGTCATCAACTAGGCACTCTGGTACTTTCTAACTAATCGTGCTTTTTGAGGGAGAAAGATAATGTGAAAGTTTCTGTCTGAGTTATTGCCTGTTTGTGTGAGAGAAAGTGGACATCTATTTATTTATTATGAAGCAATTCGGTTCTGATGTGACTCTGTACTTCTCTTTTAGCAATTTGAATTGAAGCAATGATTAACAG----AAACAACTCTCCATTCTTTGCAATCTTTTATGGTTGATGAAGTATTTCTGACTCTTAATTTATCCTGCGAAGTTCATTGCTTTCATATTTTTGGAGTATTTATTATGTTGAAGGTGCACCAAAGTGGTAACTGATTTTGTCTACCCTCACTAATTTTGTAGAGTAAGCTTTGAGTTGGAACCTGGAACAGTTGGCCAAACAACTGATTTTAAGGAATCCAATAAGAGGCTTGAGTGGAATTTGAAGAAGGTAATATATCCATCTCATTTCCAAGCGATTTTTCTTACCTATTTTAGGTAGACTTGTTATCTAAGACTTCTTTAAAATAATTACTGATCTGCAATTTGAAACAGGTTGTCGGTGGATCAGACCATACATTACGTGCCAAGCTAACATTTTCACAAGAGTCACATGGTATGAAGAATATTCAATCTCACTTGTTGTCCCAGCAATGTATCCTGAAGTTCTGTTATCTTAGATACAATATGACTTGGTAATTGTAATTCTGCTTTGTCCCTAATACAGGAAATATCACCAAGGAAGCTGGACCAGTGAGCATGACCTTCACAATCCCAATGTACAATCCTTCAAGGCTTCAGGTGAACAGTTGTGAAGTTAGATTCCTCGTCATAAGAACAAGAAAAATGGCATCTCACCTAGTAGGGATGTTAAAATTTGTTTGTGTATCAATTTGAATTTTGTTTTGGTTTTCCGAAGAATTTCTGTTTGATCTTTTTCTCTCCTCCTGCATTCTAAAAGATAAATTAAATGCAATGAATCATTGATAATTTTTCTGGACGAGTAATTGTTAGAATGAGATCCTTTTAGACAACAGCCAACTGGAAAGACCACAGAGGTGGAGCTGCATGAAAATTTCCTCAAACTAGTTGTTTCATCAATTTTGCTACCTCATCTCTTCAGCAGATGTATGTTCCCATTTTGAAGGGATTGAACTGGAAAGAGGTGTGAAGTAGCCACATCAAATAATTTTGTTCGAGGGAGGTTATGATCTAGGCCCTTTGTGGTGATAATTAAGGCTTGTCTAAAGGGGGAGAGAATGGTTTGGGACAGAGAATGAGCCAATGAGGAACATGGAAGGAGGACATATTTAATATCTAATGTGATGTTAAACTCAAACCAATGATGAACCAAACTTTTAGAGGTTCCAAATATGAGGCGGATAACACTGCACATCTAGTAAAAATGAATTAAATGAACAACTGGTGTATATTTTCTCCTCCATAAGTTGTGGATTGGGGTTTGTGGATATTGTTCATATACCTCTAACCTAATTTCTGGTTGTTTCTTGCAGGTGAAATATCTGCAAATTGCAAAGAAGTCAAAGACATATAATCCTTATCGGTGGGTGAGATATGTGACTCAGGCCAATTCATATGTTGCTCGTATATGATGGCTGTTGAGACCTTTTCCAGCATTACCCTCCTCGGTTTC-TTCTTCTCTTTTTCACTTCTTCCTAAACATCTTTTGCCCACTCCCTGTTGAGGTGTCTTGAGTTCTAAATTGTCTTTTCTAACTCTGGTTTTGGGCTTTCAATGTTTGTACTATATTGTCTAGATAATGATGGAGGGCTCTTTGGTGATTCTCATTTTAAAAAATTGTGCAACTAATGGAAAATTTTG-CTATTTAAATTCTTCTGCTTTGGATATGAGGGGGTCTAGAAAGATCATGTTTGTAGTTGCCAGTGTTTTTCGTTCGTATGAAGTCCTCGTTGAGGCATCGACTGATAAACAGATTTCAGACTTTCTAGAGATTGTAAGACTTGGCATATACGACGATGGTTAGTAAATATAAACGAAGAACACTTTCAAATAAACTGACAATTATCTGTCTTCATTTTCAATAGATTTGAGGGTACACATTATATCAATACTCCCAATCAATGTGTAAACTGAGTGACGGAAGTCCTATTGAACTTGATCTAGGGTCACAAGAGTAGTACATTTTACCATTATGTTCAATAATACGCTTATCGTGATCCATAGTTTTCGCGTTCATTTGTCATATATCAATGGGAGCGTACCCTTAATTATTGTTGTTATGACCTAGTACACAAAGAAAACCTTTGTAGATAGGACGAGAACCAACATGAGGACTAGATATACGTATCTCCCTTACGACCTTGTTAATGGGGTGAGTTGGTCCCCAGGGGCAAACGAGCTTCAAATCAGGAAAAAATAGATTTTATCAATTTTCGTGTGCTATAGTTCATAATATTTCGATGATATCGGATTTCAGCTTGTTTTTTTAGTGAATTGGTCCCGAGGGGCAAACGAGCTCCAAAGAAGGAAAAAATAGATTTTATCAATTTTCGTGTGCTATAGTTCATGATATTTCGATGATATCGGATTTCAGCTTCTTTTTCGTGAGTTGGTCCCGAGGGGCAAACGAGCTCCAAAGCAGGAAAAAACAGATTTTATCAATTTTCTTGTGCTATAGTTCATGATATTTCGATGATATTGGATTTCAGCTTGTTTTTATCGAAATTATTCATGGACTTTTGTTATGATCTTATTAATGACATGAGTTGGTCTTGATGGACAAACAAACATATTTTCAACTTCAAACGAGCTCAAAACATGAAATTAGATTTTATTGATTTTTATGTGCTACAGTCTATAATTTTTTGTGATATTGAATTCTGACTAGTTTTTTATCAAAATTTTAATTAAAATTCTGATTAAGGGTGAAGTGAAATAAAAGATATGCCAGAAACAATGAATTCTTTTTTTCTAGAATAAATTTGGCAACACAGTTTTCTGGAGGACAGGAATAAGTGACATTTCATAAGAACTAACAAGTACAATATTAGTAACCATGGTTGTGATGAGGTCGTAGATATTCATTCATATAGAATTGTTTTTGTTAGAAAGTATTTTATCTAATATAAAACTTTTTGGTGTAAATTCGGCATAATACACGGCGGTGGGAAATAAATAAAATAAAAAGTATAGTACTATATTAATAAATGAAATCTATTTCTTTTGTGATTTTATAACTTTATTTCTAGTTTTGTATCCTTTTTCGAAATTTTATTATTTTTGGAATAACGCAAGAAAAAACTTTATAGGTTTTGTTTTCTTATACCAAATTATAAAGGGTTATGATTATCAATTTCTTATACTAAAATATATAAAATTACAAATTAACACTTTTAAAATAAATTTTTTAATTTCAAGTCAATATAATCTTAAATTATTACCAAAAAGAATTTTTTTTATTTTGCTAGACAATTTACATTAAAACTTCAATTAAATTCAGATCAGACATCACAAAATTTATTTTTAAATAATATTTTTATAATTTTTTCCCGTATCTAGAGCTCAAATTTGAAACTACGGCCCGAAAAGAAACTAAATAGAAGTGTAAAGTGTCGACATCTCAACCTTACATACACATTACAATGCAAAAATTGTCGAAGAAAAAATAGTAAGAATTGTAAGGAAAACAACAAAAACCAATTGGACCAAATATGGAAAGAGGCAAAAACTTGAAAAAAAAGCCATCATCATCATCACAATCTTTAATTTTATTTTTTCCTTTTTGTCATTTCAATGAAAGAAAAAGGGATAAGAATCCACAAAGAGAAAAAAAAAAAAAAAAAAAAAAAG</genome_strand>
        <mrna_strand>TTTCTGTAACTTCTTCTTTCTTTTTGTATTGTAGTTTTACAATTATGTTGATAACTCAGACTTCTTCTCCTCTATTAGGCCGAAGTTATCTTGAAAATCCGTGCTGAATTTCCTTCGGACATCACTGCAAATACAATCTTGGTACAAATGCCGCTGCCTACATATACAAGCAGGTAGTCTTTACTTTTACTTCTGCTCCAGAGCACATGCATGGATTTTACCTTTTCTTTTCCTGGCATCTTTTTGTGGTATTCTCGTCATCAACTAGGCACTCTGGTACTTTCTAACTAATCGTGCTTTTTGAGGGAGAAAGAT-AGGTGAAAGTTTCTGTGTGAGTTATTGCCTGTTTGTGTGAGAGAAAGTGGACATCTATTTATTTATTATGAAGCAATT-GGTTCTGATGTGACTCTGTACTTCTCTTTTAGCAATTTGAATTGAAGCAATAATTAACAGATACAAACAACTCTCCATTCTTTGCAATCTTTTATGGTTGATGAAGTATTTCCGACTCTTAATTTATCCTGCGAAGTTCATTGCTTTCATATTTTTGGAGTATTTATTATGTTGAAGGTGCACCAAAGTGGTAACTGATTTTGTCTACCCTCACTAATTTT-TAGAGTAAGCTTTGAGTTGGAACCTGGAACAGTTGGCCAAACAACTGATTTTAAGGAATCCAATAAGAGGCTTGAGTGGAATTTGAAAAAG........................................................................................................GTTTTTGGTGGATCAGACCCTACATTACGTGCCAAGGTAACATTTTCCCAAGGGTCCCCTG...............................................................................................................GAAATTTCCCCAAGGAAGCTGGACCCGGGGGCCTGACCTTCCCAATCCCAATGTACAATCCTTCAAGGGTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATTTTTGCAAATTGCAAAGAAGTCAAAGACATATAATCCTTTTCGGGGGGGGAGATATGGGACTCAGGCCAATTCATATGTTGCTCGTATATGATGGCTGTTGAGACCTTTTCCCCCCTTACCCCCCTCGGTTTCTTTTTTTTTTTTTTCACTTTTTCCTAAACATTTTTTGCCCCCCCCCCGTTGGGGGGTTTTGAGTTTTAAATTGTTTTTTTTAACTTTGGTTTTGGGCTTTCAAAGTTTGTACTATATTTTTTAAAAAAAGAGGGGGGGCTTTTTGGTGATTTTCCTTTTAAAAAATTGGGCAACTAATGGAAAATTTTGATTATTTAAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321996" ref_strand="+" ref_description="SGN-U321996        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT4G24550.2 | Symbol: None | clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family | chr4:12675775-12679074 FORWARD | Aliases: None (evalue: 1e-35, score=145) genbank/nr: PREDICTED(evalue: 2e-34, score=147)">
      <seq>gttgtcggtggatcagaccatacattacgtgccaagctaacattttcacaagagtcacatggaaatatcaccaaggaagctggaccagtgagcatgaccttcacaatcccaatgtacaatccttcaaggcttcaggtgaaatatctgcaaattgcaaagaagtcaaagacatataatccttatcggtgggtgagatatgtgactcaggccaattcatatgttgctcgtatatgatggctgttgagaccttttccagcattaccctcctcggtttctttcttctctttttcacttcttcctaaacatcttttgcccactccctgttgaggtgtcttgagttctaaattgtcttttctaactctggttttgggctttcaatgtttgtactatattgtctagataatgatggagggctctttggtgattctcattttaaaaaattgtgcaactaatggaaaattttgctatttaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="42691" stop="40796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42391" g_stop="42331" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42330" i_stop="42220" i_length="111">
            <donor d_prob="0.914" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42219" g_stop="42146" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="135" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42145" i_stop="41433" i_length="713">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="41432" g_stop="41097" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="472" r_length="337" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="473" polyA_stop="484"/>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U321996" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42391" e_stop="42331"/>
          <exon e_start="42219" e_stop="42146"/>
          <exon e_start="41432" e_stop="41097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTCGGTGGATCAGACCATACATTACGTGCCAAGCTAACATTTTCACAAGAGTCACATGGTATGAAGAATATTCAATCTCACTTGTTGTCCCAGCAATGTATCCTGAAGTTCTGTTATCTTAGATACAATATGACTTGGTAATTGTAATTCTGCTTTGTCCCTAATACAGGAAATATCACCAAGGAAGCTGGACCAGTGAGCATGACCTTCACAATCCCAATGTACAATCCTTCAAGGCTTCAGGTGAACAGTTGTGAAGTTAGATTCCTCGTCATAAGAACAAGAAAAATGGCATCTCACCTAGTAGGGATGTTAAAATTTGTTTGTGTATCAATTTGAATTTTGTTTTGGTTTTCCGAAGAATTTCTGTTTGATCTTTTTCTCTCCTCCTGCATTCTAAAAGATAAATTAAATGCAATGAATCATTGATAATTTTTCTGGACGAGTAATTGTTAGAATGAGATCCTTTTAGACAACAGCCAACTGGAAAGACCACAGAGGTGGAGCTGCATGAAAATTTCCTCAAACTAGTTGTTTCATCAATTTTGCTACCTCATCTCTTCAGCAGATGTATGTTCCCATTTTGAAGGGATTGAACTGGAAAGAGGTGTGAAGTAGCCACATCAAATAATTTTGTTCGAGGGAGGTTATGATCTAGGCCCTTTGTGGTGATAATTAAGGCTTGTCTAAAGGGGGAGAGAATGGTTTGGGACAGAGAATGAGCCAATGAGGAACATGGAAGGAGGACATATTTAATATCTAATGTGATGTTAAACTCAAACCAATGATGAACCAAACTTTTAGAGGTTCCAAATATGAGGCGGATAACACTGCACATCTAGTAAAAATGAATTAAATGAACAACTGGTGTATATTTTCTCCTCCATAAGTTGTGGATTGGGGTTTGTGGATATTGTTCATATACCTCTAACCTAATTTCTGGTTGTTTCTTGCAGGTGAAATATCTGCAAATTGCAAAGAAGTCAAAGACATATAATCCTTATCGGTGGGTGAGATATGTGACTCAGGCCAATTCATATGTTGCTCGTATATGATGGCTGTTGAGACCTTTTCCAGCATTACCCTCCTCGGTTTC-TTCTTCTCTTTTTCACTTCTTCCTAAACATCTTTTGCCCACTCCCTGTTGAGGTGTCTTGAGTTCTAAATTGTCTTTTCTAACTCTGGTTTTGGGCTTTCAATGTTTGTACTATATTGTCTAGATAATGATGGAGGGCTCTTTGGTGATTCTCATTTTAAAAAATTGTGCAACTAATGGAAAATTTTGCTATTTAA</genome_strand>
        <mrna_strand>GTTGTCGGTGGATCAGACCATACATTACGTGCCAAGCTAACATTTTCACAAGAGTCACATG...............................................................................................................GAAATATCACCAAGGAAGCTGGACCAGTGAGCATGACCTTCACAATCCCAATGTACAATCCTTCAAGGCTTCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAATATCTGCAAATTGCAAAGAAGTCAAAGACATATAATCCTTATCGGTGGGTGAGATATGTGACTCAGGCCAATTCATATGTTGCTCGTATATGATGGCTGTTGAGACCTTTTCCAGCATTACCCTCCTCGGTTTCTTTCTTCTCTTTTTCACTTCTTCCTAAACATCTTTTGCCCACTCCCTGTTGAGGTGTCTTGAGTTCTAAATTGTCTTTTCTAACTCTGGTTTTGGGCTTTCAATGTTTGTACTATATTGTCTAGATAATGATGGAGGGCTCTTTGGTGATTCTCATTTTAAAAAATTGTGCAACTAATGGAAAATTTTGCTATTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321994" ref_strand="+" ref_description="SGN-U321994        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: AT4G24550.2 | Symbol: None | clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family | chr4:12675775-12679074 FORWARD | Aliases: None (evalue: 8e-14, score=74.3) genbank/nr: gi|15233859|ref|NP_194186.1| clathrin coat assembly like protein [Arabidopsis thaliana] gi|7448831|pir||T05579 hypothetical protein F22K18.250 - Arabidopsis thaliana gi|4220535|emb|CAA23008.1| clathrin coat assembly like protein [Arabidopsis thaliana] gi|7269305|emb|CAB79365.1| clathrin coat assembly like protein [Arabidopsis thaliana] gi|18176154|gb|AAL59993.1| putative clathrin coat assembly protein [Arabidopsis thaliana](evalue: 6e-12, score=74.3)">
      <seq>ccctcgaacaaaattatttgatgtggctacttcacacctctctccagttcaatcccttcaaaatgggaacacacatctgctgaagagatgaggtagcaaaattgatgaaacaactagtttgaggaaattttcatgcagctccacctctgtagtctttccagttggctgttgtctaaaaggatctcattctaacaattacttgtccagaaaaattatcaatgattcattgcatttaatttatcttttagaatgcaggagaagagaaaaagatcaaacagaaattcttcggaaaaccaaaacaaaattcaaattgatatataatgcacaaacaaattttaacatccctactaggtgagatgccatttttcttgttcttatgacaaggaatctaacttcacaactgcttacctgaagccttgaaggattatacattgggattgtgaaggtcatgctcactggtccagcttccttggtgatatttcctgtattagggacaaagcagaattacaattaccaagtcatattgtatctaagataacagaactgcaggatacattgctgggataacaagtgagattgaatattcttcataccatgtgactcttgtgaaaatgttagcttggcacgtaatgtatggtctgatccaccgacaacctgtttcaaattgcagatcagtaattattttaaagaagtcttacataacaagtctacctaaaataggtaagaaaaatcgcttggaaatgagatggatatattaccttcttcaaattcactcaagcctcttattggatccttaaaatcagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="41445" stop="42845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="41745" g_stop="42545" g_length="801"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="806" r_length="806" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U321994" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>801</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321994" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="41745" e_stop="42545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTCGAACAAAATTATTTGATGTGGCTACTTCACACCTCTTTCCAGTTCAATCCCTTCAAAATGGGAACATACATCTGCTGAAGAGATGAGGTAGCAAAATTGATGAAACAACTAGTTTGAGGAAATTTTCATGCAGCTCCACCTCTGTGGTCTTTCCAGTTGGCTGTTGTCTAAAAGGATCTCATTCTAACAATTACTCGTCCAGAAAAATTATCAATGATTCATTGCATTTAATTTATCTTTTAGAATGCAGGAGGAGAGAAAAAGATCAAACAGAAATTCTTCGGAAAACCAAAACAAAATTCAAATTGA----T-A--CACAAACAAATTTTAACATCCCTACTAGGTGAGATGCCATTTTTCTTGTTCTTATGACGAGGAATCTAACTTCACAACTGTTCACCTGAAGCCTTGAAGGATTGTACATTGGGATTGTGAAGGTCATGCTCACTGGTCCAGCTTCCTTGGTGATATTTCCTGTATTAGGGACAAAGCAGAATTACAATTACCAAGTCATATTGTATCTAAGATAACAGAACTTCAGGATACATTGCTGGGACAACAAGTGAGATTGAATATTCTTCATACCATGTGACTCTTGTGAAAATGTTAGCTTGGCACGTAATGTATGGTCTGATCCACCGACAACCTGTTTCAAATTGCAGATCAGTAATTATTTTAAAGAAGTCTTAGATAACAAGTCTACCTAAAATAGGTAAGAAAAATCGCTTGGAAATGAGATGGATATATTACCTTCTTCAAATTCCACTCAAGCCTCTTATTGGATTCCTTAAAATCAGTTG</genome_strand>
        <mrna_strand>CCCTCGAACAAAATTATTTGATGTGGCTACTTCACACCTCTCTCCAGTTCAATCCCTTCAAAATGGGAACACACATCTGCTGAAGAGATGAGGTAGCAAAATTGATGAAACAACTAGTTTGAGGAAATTTTCATGCAGCTCCACCTCTGTAGTCTTTCCAGTTGGCTGTTGTCTAAAAGGATCTCATTCTAACAATTACTTGTCCAGAAAAATTATCAATGATTCATTGCATTTAATTTATCTTTTAGAATGCAGGAGAAGAGAAAAAGATCAAACAGAAATTCTTCGGAAAACCAAAACAAAATTCAAATTGATATATAATGCACAAACAAATTTTAACATCCCTACTAGGTGAGATGCCATTTTTCTTGTTCTTATGACAAGGAATCTAACTTCACAACTGCTTACCTGAAGCCTTGAAGGATTATACATTGGGATTGTGAAGGTCATGCTCACTGGTCCAGCTTCCTTGGTGATATTTCCTGTATTAGGGACAAAGCAGAATTACAATTACCAAGTCATATTGTATCTAAGATAACAGAACTGCAGGATACATTGCTGGGATAACAAGTGAGATTGAATATTCTTCATACCATGTGACTCTTGTGAAAATGTTAGCTTGGCACGTAATGTATGGTCTGATCCACCGACAACCTGTTTCAAATTGCAGATCAGTAATTATTTTAAAGAAGTCTTACATAACAAGTCTACCTAAAATAGGTAAGAAAAATCGCTTGGAAATGAGATGGATATATTACCTTCTTCAAATT-CACTCAAGCCTCTTATTGGA-TCCTTAAAATCAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320038" ref_strand="+" ref_description="SGN-U320038        Tomato 200607 #1 [11 ESTs aligned] arabidopsis/peptide: AT4G24550.1 | Symbol: None | clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family | chr4:12675860-12679074 FORWARD | Aliases: F22K18.250, F22K18_250 (evalue: 3e-140, score=494) genbank/nr: PREDICTED(evalue: 7e-139, score=496)">
      <seq>gaaagaatggaaaaaatcagagataaaacgtgagaataaattaagacaagtatcaggagaagcgaaaaactccatctcagcgaaatagcaaccatgatttctcagttctttgtgctttctcagagaggcgacagcatcgtcttccgcgactatcggggtgatgtaccaaaaggaagtgcagagatcttcttccggaaagtgaagttttggaaagaagatggcggagaggaagcacctcctgtatttaatgtggatggtgtgaactacttccatgtgaaggtagttggtctgctttttgttgcgacatctaggacaaattggtcgccttctctagtattggagcttctccagaggattgcacgtgtaatcaaagattaccttggtgttctaaatgaagactcattgcggaaaaattttgtgctggtgtatgagcttcttgatgaagttgttgattttggttatgtgcaaacaacgtcgacagaaatcttaaagtcttacatatttaatgagccaattatgattgacgctggccgcttgccaccccttggtcctgcagccatgttcatgcaaggatccaaaagaatgccagggacagcaattactaaatctgttgtggcaaatgaacctggggggagaaagagggaggaaattttcgtggatataattgaaaaaatcagcattactttcagctcaagtggatatatattgacttctgaaattgatgggaccattcaaatgaagagttatcttactggtaatccagaaatcagattggctctcaatgaggatctgggcattggaagggctggtgggagatcagcttacgattatggaggttcggctgggtctggagcagtagtactggatgattgcaatttccatgaatcggtgcaacttgatagttttgatgtggataggaccttgactctggttcctccggatggtgaatttcctgtcatgaattaccggataacccaagaattcaagcctccctttcgtattaatactttgattgaagaagctggatcacttaaggctgaagttatcttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="48811" stop="42993"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48511" g_stop="48361" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="151" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48360" i_stop="47335" i_length="1026">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47334" g_stop="47240" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="246" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47239" i_stop="45673" i_length="1567">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45672" g_stop="45469" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="247" r_stop="450" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45468" i_stop="44774" i_length="695">
            <donor d_prob="0.529" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44773" g_stop="44657" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="567" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="44656" i_stop="44528" i_length="129">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="44527" g_stop="44399" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="568" r_stop="696" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="44398" i_stop="43979" i_length="420">
            <donor d_prob="0.632" d_score="1.00"/>
            <acceptor a_prob="0.893" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="43978" g_stop="43849" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="697" r_stop="826" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="43848" i_stop="43629" i_length="220">
            <donor d_prob="0.945" d_score="0.98"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="43628" g_stop="43525" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="827" r_stop="930" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="43524" i_stop="43415" i_length="110">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.972" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="43414" g_stop="43310" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="931" r_stop="1035" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="43309" i_stop="43122" i_length="188">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="43121" g_stop="43103" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1036" r_stop="1054" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U320038" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1054</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U320038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48511" e_stop="48361"/>
          <exon e_start="47334" e_stop="47240"/>
          <exon e_start="45672" e_stop="45469"/>
          <exon e_start="44773" e_stop="44657"/>
          <exon e_start="44527" e_stop="44399"/>
          <exon e_start="43978" e_stop="43849"/>
          <exon e_start="43628" e_stop="43525"/>
          <exon e_start="43414" e_stop="43310"/>
          <exon e_start="43121" e_stop="43103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGAATGAAAAAAATCAGAGATAAAACGTGAGAATAAATTAAGACAAGTATCAGGAGAAGCGAAAAACTCCATCTCAGCGAAATAGCAACCATGATTTCTCAGTTCTTTGTGCTTTCTCAGAGAGGCGACAGCATCGTCTTCCGCGACTGTGAGTTTTTCGTTTTTTACTATCATTTTACTTTGTGTACTGCATGATTGTTTCAGATCTCATTCCGGTACGAACGTTATCACTTTCTCTCCATTGATTCTTCCAATTCGTAGAGCTACGGATTGAAATTTGCTTATTTTTTTACTTCCTGTGGCTTGAATCAAGTTTCAGTTCGTTGATCTAGATGATACAACTTTAGAACAATTGGCTGTGATCGAATTTGTCCTATTAAGCTATGACTAATCGAATTTGTAGCCAACGAGCTTAAATTAGTTGATCGCTCTGATTTTTAGGGGAATATTGACTGTTTTTTTTGGTTTTTAGAGTTATGAACTGTCAAATCCTATGTCATTACATTTTCTCTAGGGCTTAATGTATTCTGAATCGATCGGATAATTGTGAATTTAGTTTCATGATGTGCGAATTTGGCAGTTTGTTAAAGGAGTAATCAAATTAAGTTATATTTGTCAAATGATGAGATATTTAGCAAATTAAGTTACTTTGAGCTTAAGATGTCAGTTTCATTTGTAAGTTGGGTTTATTTGTAGCTGGATTCTGAATATTATCTTTGTTAGGAGTGAAGTTGGGAGGTGGGAGTGAGGGTGGGGTGGGAGAGTAGGAAAAGAAGGGGGTTCAAATGTTCCTGAAGTGCACGAGGGTGTATGATTATGTTATTATTTTTGGGTCTTCATTGTTGTGAAGGTAACCAGTGCCTGTTGAGCTATGTTTTACTGTTTTAGTGCTTGTGTTATGTTCATTGAAAAACTATGAAACAGTGAACCAGCAGCTACCTTCTTTTCTAAGGAAAGTTAGGGCATGAGACAAGGAGGTGGTGTTCTGTAACTAAGTTAACTGCACACATCAGTTCTTTCTCTACGTTCATTTTCATTGAGATGAATGATTCATGTGGACCTTCCATTCACCCTTATCTTTTGGAATCACTGTCCTTAATTTCTCTTTTTTCTCCTCTGCAATATAAATGAGGCTGAATCTGATGAGTTTCCTTTAACATTTACGTAAAAGCAGATCGGGGTGATGTACCAAAAGGAAGTGCAGAGATCTTCTTCCGGAAAGTGAAGTTTTGGAAAGAAGATGGCGGAGAGGAAGCACCTCCTGTATTTGTAGGTATTCTTTTCTTGTGTAATAGATGCAATTTCCATATTTTTTTGTTGAAAAAAATTGAACAACTTGGAAACTTACCACCACTTCCTTGTTAGTCATTTATATCTGAAAGAAATTTCCAAGTACCAGAGGGTCGTTGCTTATTATTCATCTCACTCGCTTCATAAATAGATGAATTCCCTCTTTAAGATTTTAAGGAGGAGCTTCATTGAACTGTCTACCTAAATAATGTGTTGAAAGACATTTGACTCCAAGTGCACGCTGAACAGTTCAGAAGTAGTAAGCTGAGTGAAGGGAGGTTCTCAATAGACCATTCTCTATCACATCAGGCTTTCCCTGACTTATCTGAAGGATGAAATTCCATTATCCATATCATCTCATACTAAAATTCGTATGGCAGGAGGTTTACATCATCTCATGTTTAAATCCAATTAATTCTTGTGTTAATCTTTAGTTAACAGGTGGGTGAGCATAGTTGAACATAGCTTATTTCTATTGCACCTGAAATTGCTAACTTGTCTAGAGGAAGATGAACTGATTATACTCTTAATGTCGAGAGAATCACTAAGTATATCACCAGATATATTCATAATATGTATATCATTGATGGAAGTCGAGGGAATAATATAAATGTGTCGTGATTTTCATCCAAGAGGTGACTCTCATAAAAAGAAGAAGAAAAGAGGCTATTGTTGAATAATTGGTTTATATGGATCCTTCCTATCCTCTTTTATGATGAAAGTTTAATGATTTTTGACTTTCGACGAGGACAAAGAATATTGGAACAAGTGATTACTTCATCATAATAAATAATCCTAATAATTAAAGAAAATATCTTATTTCACGTATTTTGAAACTACTATGTTATTGATTAAAGCTATTCACTGGTGATGGTTCTGGACCCCTCAATCTGTTTTTCTGTGTTTGATTTCTCTCTCTTTCACCTCACTTTAAATTGTTCTCTTTAAGATGAACATGAAGACAAAAACCTCGTTGCTAATGTCCACAACAAAGTAACTTGAAGATTCATGTATGTGAACTGTCCTATGCACCTCAAGGCTCAAAACTATTAAGTGCTATACTTAATAGAAATTTTCTTCTGTTCCCTGTAATCCCCTTGGGATATAATTGCTTGGCAGAACAGAAGGATTAATTGGCTTCATCAAGGAATATACTTTTGGGCAAGCTGCTCGTAAATAGCTAATCTCTAATGCTCCGTTCTACTGCAGCCTTTGCAGTCCCACACTGTCTAATCAACTTTCAAGTTTTGTCTGTCATGAGTATTTGTCCCTTTTCAATTCTTGAACCTGTAAAACTAATGTCACTGATAGCTTGCAACACTCTTTACTTTTGTACGCACAAGTGCAGAGTTAATCAATTCTAGGCTTCCCACATATGCGTGCTTGAAAAATTTTCAACTGACAGACAATTTTTAATGGTGGCTGTCAGTGATCATTGTTTTGTTTATTATGCATATTCCTTCTATATGAAGCATTTGGTTTTGCGAACTGCAACTGTGGAAAGAGGTGTTAATAGTGTTGTTTTCTTTGTTTCCTTTTCATGCAGAATGTGGATGGTGTGAACTACTTCCATGTGAAGGTAGTTGGTCTGCTTTTTGTTGCGACATCTAGGACAAATTTGTCGCCTTCTCTAGTATTGGAGCTTCTCCAGAGGATTGCACGTGTAATCAAAGATTACCTTGGTGTTCTAAATGAAGACTCATTGCGGAAAAATTTTGTGCTGGTGTATGAGCTTCTTGATGAAGTTGTTGTAAGTCACATGCCGTATGTATATTTTCATGATAATGTATAGTCTCTCGGATAGTCTTCAAGGAATTACACCCTCTGCCCATCTATCAGGGGCAATTTGAGTTTCAAAATTGATGCCAAGAATTGAAGTTTTTTAGTTCTTGAAAAGCGAAGATTGAACAGTTAAGAACTACTTCATAAAAAACTAATTCCATACAATCGCAGGTTTCAAAATATTCACCACAATAATTATTATAAAAGTTCATCCTCAAATTCACACTGCATTATCATAGCTTTTTCTTGACCTTGTAATTTTGTCTACAACAATCATATATTTCTATGTAAACCCTTTAAAGTATTGTCTTTAAAATAGTCATTTTAAATAGTCTTTAAAATAGTCATATTGTATAGTTTGGCGGTAAATTCACTCTATATTTTATATATTAGACAATATACTCATGCAAATATGACTGGTTTGTGAAACAGTCAAGTTATGGTTTCCTTCAACCGAGTTTTAGTTTTATTCTGGGTACTCTGCAGGGTTTGATTTCTTTGGCTTCATTAGGCATTGATCTCTCAAACTACCATAATCTTATTTTTCCGTTGTTTCTATGAATTATTATGCACTCCCAGAAAATCCCGAGTTATCTAGATCATCTTTATAAAGTTGAGATTATATTCTTAATTTTTTCTTTGGTGTTCTCCTTTCTTTGACAGGATTTTGGTTATGTGCAAACAACGTCGACAGAAATCTTAAAGTCTTACATATTTAATGAGCCAATTATGATTGACGCTGGCCGCTTGCCACCCCTTGGTCCTGCAGCCATGTTCATGGTAATTTTATATTAATATTAACTTGGAAGGTGTTACTTTTAAAGGACCAGAATGGATCTTAATGTTTTTCATTTTTGTTTGATATACGGTTGGTACTTTCGTTTATGCCATTGTATTTGTTAAATGCAGCAAGGATCCAAAAGAATGCCAGGGACAGCAATTACTAAATCTGTTGTGGCAAATGAACCTGGGGGGAGAAAGAGGGAGGAAATTTTCGTGGATATAATTGAAAAAATCAGCATTACTTTCAGCTCAAGTGTGAGTTTTCTGCTTTGATTCTGGAATTTTGATAGTCTTACTTTCCTCTTGCAGCAATATGCTGGGATGAAAAAGTATGTCTTGACTCGCTACATGAAAAGTGAAACTGATAAATGCACAGGAAATAAATGTTGAGTGGTTGAACCAAAACCTCTTTATGCCTTTGGTATTGTTTTCCTATGAGAAGATATTATTAGGGATGGTTAAATTTTATTTTGTGAGTCAAACATCTCTCATTCACTAAAATATATTCTCTTCCTAACTGATTATTTAAATGGTTTAATCTCATTCAATTTTAGTAAGTTATTTTTTGTCAAGTACGATTCCAATTAAATATATTTTTTATAGTTGTAAAATGTGTGGTTTCTTCTACCCTATCCTTCCTTTCGTACATATATCTTATCATTATGACAAATACAGGGATATATATTGACTTCTGAAATTGATGGGACCATTCAAATGAAGAGTTATCTTACTGGTAATCCAGAAATCAGATTAGCTCTCAATGAGGATCTGGGCATTGGAAGGGCCGGTGGGAGATCAGCTTACGGTAATCTACTCACTAATGAACTCCTGCATTTCTCTGCTTAGTGATGATTCACTGCATGCTAAATATAATTTTTTTTTTAAAAAAAACTGATCACTTGTTTAATTATCTTGCAATCTGAGAGTTTTGTGCCTCTGAATTGCATCGTTTTTGGTATTCCAATTCTCCATGTGGTGCATTTGGTACTACATAAAAAGTGATAGCACCACATTTGGTCTAACAGATTATGGAGGTTCGGCTGGGTCTGGAGCAGTAGTACTGGATGATTGCAATTTCCATGAATCGGTGCAACTTGATAGTTTTGATGTGGACAGGACCTTGACTCTGGTGAGTGGTATAGAAAGCATGTCATTCATAGATTTATAATATTTTTGTGATCCATCTCTTGAAAGATTGTGTCCCTGGGAGATCTGATGCAAATCATATTGCTTTATTAGGTTCCTCCGGATGGTGAATTTCCTGTCATGAATTACCGGATAACCCAGGAATTCAAGCCTCCCTTTCGTATTAATACTTTGATTGAAGAAGCTGGATCACTTAAGGTAGACACTGTTTACTTCCCATTTCAAAACTAAAATTTGTTCTAGCTAAGTGTGGTTTAGGTAGGTGTCTGCATGTTTGTTGTGTCAAAGAACAGAGTGATAGAACACACTTTCTGTAACTTCTTCTTTCTTTTCATATTGTAGTTTTACAATTATGTTGATAACTCAGACTTCTTCTCCTCTATTAGGCTGAAGTTATCTTGAAAA</genome_strand>
        <mrna_strand>GAAAGAATGGAAAAAATCAGAGATAAAACGTGAGAATAAATTAAGACAAGTATCAGGAGAAGCGAAAAACTCCATCTCAGCGAAATAGCAACCATGATTTCTCAGTTCTTTGTGCTTTCTCAGAGAGGCGACAGCATCGTCTTCCGCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGGTGATGTACCAAAAGGAAGTGCAGAGATCTTCTTCCGGAAAGTGAAGTTTTGGAAAGAAGATGGCGGAGAGGAAGCACCTCCTGTATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGGATGGTGTGAACTACTTCCATGTGAAGGTAGTTGGTCTGCTTTTTGTTGCGACATCTAGGACAAATTGGTCGCCTTCTCTAGTATTGGAGCTTCTCCAGAGGATTGCACGTGTAATCAAAGATTACCTTGGTGTTCTAAATGAAGACTCATTGCGGAAAAATTTTGTGCTGGTGTATGAGCTTCTTGATGAAGTTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGGTTATGTGCAAACAACGTCGACAGAAATCTTAAAGTCTTACATATTTAATGAGCCAATTATGATTGACGCTGGCCGCTTGCCACCCCTTGGTCCTGCAGCCATGTTCATG.................................................................................................................................CAAGGATCCAAAAGAATGCCAGGGACAGCAATTACTAAATCTGTTGTGGCAAATGAACCTGGGGGGAGAAAGAGGGAGGAAATTTTCGTGGATATAATTGAAAAAATCAGCATTACTTTCAGCTCAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................GGATATATATTGACTTCTGAAATTGATGGGACCATTCAAATGAAGAGTTATCTTACTGGTAATCCAGAAATCAGATTGGCTCTCAATGAGGATCTGGGCATTGGAAGGGCTGGTGGGAGATCAGCTTACG............................................................................................................................................................................................................................ATTATGGAGGTTCGGCTGGGTCTGGAGCAGTAGTACTGGATGATTGCAATTTCCATGAATCGGTGCAACTTGATAGTTTTGATGTGGATAGGACCTTGACTCTG..............................................................................................................GTTCCTCCGGATGGTGAATTTCCTGTCATGAATTACCGGATAACCCAAGAATTCAAGCCTCCCTTTCGTATTAATACTTTGATTGAAGAAGCTGGATCACTTAAG............................................................................................................................................................................................GCTGAAGTTATCTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336999" ref_strand="+" ref_description="SGN-U336999        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT4G24550.1 | Symbol: None | clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family | chr4:12675860-12679074 FORWARD | Aliases: F22K18.250, F22K18_250 (evalue: 1e-63, score=237) genbank/nr: PREDICTED(evalue: 1e-63, score=244)">
      <seq>tcagcgaaatagcaaccatgatttctcagttctttgtgctttctcagagaggcgacagcatcgtcttccgcgactatcggggtgatgtaccaaaaggaagtgcagagatcttcttccggaaagtgaagttttggaaagaagatggcggagaggaagcacctcctgtatttaatgtggatggtgtgaactacttccatgtgaaggtagttggtctgctttttgttgcgacatctaggacaaatttgtcgccttctctagtattggagcttctccagaggattgcacgtgtaatcaaagattaccttggtgttctaaatgaagactcattgcggaaaaattttgtgctggtgtaagaacttcttgatgaagttgttgattttggttatgtccacacaacgcctactgaaatcttaaagtctccactatttagtgagcctattatgattgacgctggccgcttgccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="48735" stop="44382"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48435" g_stop="48361" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48360" i_stop="47335" i_length="1026">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.881" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47334" g_stop="47240" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="170" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47239" i_stop="45673" i_length="1567">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45672" g_stop="45469" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="374" r_length="204" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="45468" i_stop="44774" i_length="695">
            <donor d_prob="0.529" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="44773" g_stop="44682" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="375" r_stop="466" r_length="92" r_score="0.880"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U336999" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U336999" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48435" e_stop="48361"/>
          <exon e_start="47334" e_stop="47240"/>
          <exon e_start="45672" e_stop="45469"/>
          <exon e_start="44773" e_stop="44682"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCGAAATAGCAACCATGATTTCTCAGTTCTTTGTGCTTTCTCAGAGAGGCGACAGCATCGTCTTCCGCGACTGTGAGTTTTTCGTTTTTTACTATCATTTTACTTTGTGTACTGCATGATTGTTTCAGATCTCATTCCGGTACGAACGTTATCACTTTCTCTCCATTGATTCTTCCAATTCGTAGAGCTACGGATTGAAATTTGCTTATTTTTTTACTTCCTGTGGCTTGAATCAAGTTTCAGTTCGTTGATCTAGATGATACAACTTTAGAACAATTGGCTGTGATCGAATTTGTCCTATTAAGCTATGACTAATCGAATTTGTAGCCAACGAGCTTAAATTAGTTGATCGCTCTGATTTTTAGGGGAATATTGACTGTTTTTTTTGGTTTTTAGAGTTATGAACTGTCAAATCCTATGTCATTACATTTTCTCTAGGGCTTAATGTATTCTGAATCGATCGGATAATTGTGAATTTAGTTTCATGATGTGCGAATTTGGCAGTTTGTTAAAGGAGTAATCAAATTAAGTTATATTTGTCAAATGATGAGATATTTAGCAAATTAAGTTACTTTGAGCTTAAGATGTCAGTTTCATTTGTAAGTTGGGTTTATTTGTAGCTGGATTCTGAATATTATCTTTGTTAGGAGTGAAGTTGGGAGGTGGGAGTGAGGGTGGGGTGGGAGAGTAGGAAAAGAAGGGGGTTCAAATGTTCCTGAAGTGCACGAGGGTGTATGATTATGTTATTATTTTTGGGTCTTCATTGTTGTGAAGGTAACCAGTGCCTGTTGAGCTATGTTTTACTGTTTTAGTGCTTGTGTTATGTTCATTGAAAAACTATGAAACAGTGAACCAGCAGCTACCTTCTTTTCTAAGGAAAGTTAGGGCATGAGACAAGGAGGTGGTGTTCTGTAACTAAGTTAACTGCACACATCAGTTCTTTCTCTACGTTCATTTTCATTGAGATGAATGATTCATGTGGACCTTCCATTCACCCTTATCTTTTGGAATCACTGTCCTTAATTTCTCTTTTTTCTCCTCTGCAATATAAATGAGGCTGAATCTGATGAGTTTCCTTTAACATTTACGTAAAAGCAGATCGGGGTGATGTACCAAAAGGAAGTGCAGAGATCTTCTTCCGGAAAGTGAAGTTTTGGAAAGAAGATGGCGGAGAGGAAGCACCTCCTGTATTTGTAGGTATTCTTTTCTTGTGTAATAGATGCAATTTCCATATTTTTTTGTTGAAAAAAATTGAACAACTTGGAAACTTACCACCACTTCCTTGTTAGTCATTTATATCTGAAAGAAATTTCCAAGTACCAGAGGGTCGTTGCTTATTATTCATCTCACTCGCTTCATAAATAGATGAATTCCCTCTTTAAGATTTTAAGGAGGAGCTTCATTGAACTGTCTACCTAAATAATGTGTTGAAAGACATTTGACTCCAAGTGCACGCTGAACAGTTCAGAAGTAGTAAGCTGAGTGAAGGGAGGTTCTCAATAGACCATTCTCTATCACATCAGGCTTTCCCTGACTTATCTGAAGGATGAAATTCCATTATCCATATCATCTCATACTAAAATTCGTATGGCAGGAGGTTTACATCATCTCATGTTTAAATCCAATTAATTCTTGTGTTAATCTTTAGTTAACAGGTGGGTGAGCATAGTTGAACATAGCTTATTTCTATTGCACCTGAAATTGCTAACTTGTCTAGAGGAAGATGAACTGATTATACTCTTAATGTCGAGAGAATCACTAAGTATATCACCAGATATATTCATAATATGTATATCATTGATGGAAGTCGAGGGAATAATATAAATGTGTCGTGATTTTCATCCAAGAGGTGACTCTCATAAAAAGAAGAAGAAAAGAGGCTATTGTTGAATAATTGGTTTATATGGATCCTTCCTATCCTCTTTTATGATGAAAGTTTAATGATTTTTGACTTTCGACGAGGACAAAGAATATTGGAACAAGTGATTACTTCATCATAATAAATAATCCTAATAATTAAAGAAAATATCTTATTTCACGTATTTTGAAACTACTATGTTATTGATTAAAGCTATTCACTGGTGATGGTTCTGGACCCCTCAATCTGTTTTTCTGTGTTTGATTTCTCTCTCTTTCACCTCACTTTAAATTGTTCTCTTTAAGATGAACATGAAGACAAAAACCTCGTTGCTAATGTCCACAACAAAGTAACTTGAAGATTCATGTATGTGAACTGTCCTATGCACCTCAAGGCTCAAAACTATTAAGTGCTATACTTAATAGAAATTTTCTTCTGTTCCCTGTAATCCCCTTGGGATATAATTGCTTGGCAGAACAGAAGGATTAATTGGCTTCATCAAGGAATATACTTTTGGGCAAGCTGCTCGTAAATAGCTAATCTCTAATGCTCCGTTCTACTGCAGCCTTTGCAGTCCCACACTGTCTAATCAACTTTCAAGTTTTGTCTGTCATGAGTATTTGTCCCTTTTCAATTCTTGAACCTGTAAAACTAATGTCACTGATAGCTTGCAACACTCTTTACTTTTGTACGCACAAGTGCAGAGTTAATCAATTCTAGGCTTCCCACATATGCGTGCTTGAAAAATTTTCAACTGACAGACAATTTTTAATGGTGGCTGTCAGTGATCATTGTTTTGTTTATTATGCATATTCCTTCTATATGAAGCATTTGGTTTTGCGAACTGCAACTGTGGAAAGAGGTGTTAATAGTGTTGTTTTCTTTGTTTCCTTTTCATGCAGAATGTGGATGGTGTGAACTACTTCCATGTGAAGGTAGTTGGTCTGCTTTTTGTTGCGACATCTAGGACAAATTTGTCGCCTTCTCTAGTATTGGAGCTTCTCCAGAGGATTGCACGTGTAATCAAAGATTACCTTGGTGTTCTAAATGAAGACTCATTGCGGAAAAATTTTGTGCTGGTGTATGAGCTTCTTGATGAAGTTGTTGTAAGTCACATGCCGTATGTATATTTTCATGATAATGTATAGTCTCTCGGATAGTCTTCAAGGAATTACACCCTCTGCCCATCTATCAGGGGCAATTTGAGTTTCAAAATTGATGCCAAGAATTGAAGTTTTTTAGTTCTTGAAAAGCGAAGATTGAACAGTTAAGAACTACTTCATAAAAAACTAATTCCATACAATCGCAGGTTTCAAAATATTCACCACAATAATTATTATAAAAGTTCATCCTCAAATTCACACTGCATTATCATAGCTTTTTCTTGACCTTGTAATTTTGTCTACAACAATCATATATTTCTATGTAAACCCTTTAAAGTATTGTCTTTAAAATAGTCATTTTAAATAGTCTTTAAAATAGTCATATTGTATAGTTTGGCGGTAAATTCACTCTATATTTTATATATTAGACAATATACTCATGCAAATATGACTGGTTTGTGAAACAGTCAAGTTATGGTTTCCTTCAACCGAGTTTTAGTTTTATTCTGGGTACTCTGCAGGGTTTGATTTCTTTGGCTTCATTAGGCATTGATCTCTCAAACTACCATAATCTTATTTTTCCGTTGTTTCTATGAATTATTATGCACTCCCAGAAAATCCCGAGTTATCTAGATCATCTTTATAAAGTTGAGATTATATTCTTAATTTTTTCTTTGGTGTTCTCCTTTCTTTGACAGGATTTTGGTTATGTGCAAACAACGTCGACAGAAATCTTAAAGTCTTACATATTTAATGAGCCAATTATGATTGACGCTGGCCGCTTGCCACC</genome_strand>
        <mrna_strand>TCAGCGAAATAGCAACCATGATTTCTCAGTTCTTTGTGCTTTCTCAGAGAGGCGACAGCATCGTCTTCCGCGACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGGGTGATGTACCAAAAGGAAGTGCAGAGATCTTCTTCCGGAAAGTGAAGTTTTGGAAAGAAGATGGCGGAGAGGAAGCACCTCCTGTATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGGATGGTGTGAACTACTTCCATGTGAAGGTAGTTGGTCTGCTTTTTGTTGCGACATCTAGGACAAATTTGTCGCCTTCTCTAGTATTGGAGCTTCTCCAGAGGATTGCACGTGTAATCAAAGATTACCTTGGTGTTCTAAATGAAGACTCATTGCGGAAAAATTTTGTGCTGGTGTAAGAACTTCTTGATGAAGTTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGGTTATGTCCACACAACGCCTACTGAAATCTTAAAGTCTCCACTATTTAGTGAGCCTATTATGATTGACGCTGGCCGCTTGCCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U332361" ref_strand="+" ref_description="SGN-U332361        Tomato 200607 #1 [2 ESTs aligned]">
      <seq>gccggttgttaattgaaggagagttattgagaattaaaaaaaaagtagctggtatacgatagctgcaaacaccaaggtccttttccgggaaaagcagatgcaaagcaggcagaagggatgacagaagtagagttaggctcagaaaaacacaaggaagaagaaagccaaaaaataaagcgagacaaaatgacgaacacacccaagtcaagcagcaaaaaatctgattctggaccttcgtcgagcaaatcaccagaaaagcacaaggaagaggaaagccggaaaaaaaagcgagacaaaatgccaaccacacccaagtcaagcagcaaaaattctgattctggaaattcgtcgagcaaatcaccagaaaaacataaggaagaggaaagcccggaaacaaagcgagacaaaatgctggacacacccaaatcaagcagcaaagaatctgagtctggacattcgttgagcaaatcaccagaaaagcatgaggaagaggaaagccgaaaaagaaagcgagacaaaatgccgaacaaacccaaatcaagcagcaaagaatctgtggcagcttcagctggaaaacatacactgagcgcacgccaagtaaaagtaatgcgcgagcttggtttaatggctccttctgggtctccatttgataaaaggaaacatgttgttgctcctccaaaactcccaattattcccaaggaccgtgtttctacgcctaaaaggcttccatccaatcctaaggaacgtcttcccgcaattgatagaatagttgtttgtggtctagctgctgctggatttgtcaatcgtgtgatgaagtagcttttgtttctcaactgtttgatccttggtaacttagagtttgatgacaacctaaactaccaatatagtgctgaagctgtcagcagtgttatacgagaggggatgtaggattacaagccagtgggcgcggagtactgtgcacccacatttgtttttgtaacaatgagaataagttataaacttagcttttagtgatacagtttagaacatttcaattacaggtatacctcaaacaaagaagtgagtacaagtacacccgcagcctctaccccatgtctatggtgctgttgtgatatcaactgtagaaatgcacattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="60922" stop="55860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60623" g_stop="60553" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60552" i_stop="58823" i_length="1730">
            <donor d_prob="0.952" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58822" g_stop="58672" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="222" r_length="151" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58671" i_stop="58393" i_length="279">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58392" g_stop="58282" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="333" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58281" i_stop="58017" i_length="265">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58016" g_stop="57906" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="444" r_length="111" r_score="0.964"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="57905" i_stop="57668" i_length="238">
            <donor d_prob="0.930" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57667" g_stop="57557" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="555" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="57556" i_stop="56744" i_length="813">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="56743" g_stop="56160" g_length="584"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="1138" r_length="583" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U332361" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>1139</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U332361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60623" e_stop="60553"/>
          <exon e_start="58822" e_stop="58672"/>
          <exon e_start="58392" e_stop="58282"/>
          <exon e_start="58016" e_stop="57906"/>
          <exon e_start="57667" e_stop="57557"/>
          <exon e_start="56743" e_stop="56160"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGGTTGTTAATTGAAGGAGAGTTATTGAGAATAAAAAAAAAAGTAGCTGGTATAAGATAGCTGCAAACAGTAAGAATATCTCAAAACTACTTCATTATTTTCTATTTGAAGTTTATATTTACATTAACGACTTTTAGTTTATATTACCGCCCATGGAAAGTCCAAAGGTATATCATATGAAACTTGCATGATTTCCGTTATATACTGGAAAACCTTGGTGCATATTTTAAGAACAGATAGATATGGTTGACATTTGTTTCATTCAAAACTTCTGGAGAATGATCCCTGGGATGGAAGTGTACACATACTTCTTGTTAACATGAGATTGAAGTATCTTGGGCTCTTAGCCAGCTACGTATTTATTTAGGAAATGCGAAAGGTGGACCCTGTAGGCAATCACTCAAGTTGTTTCCTAAGGAAATGTGAAGTGAGCCCTGATGTGTCTCAAATTGTTTCTAGCTGACAACCAGCTCCATCACTATTCAAGCTCATTGTCGAGTATGTTTGGTTATGACTTAGTGAAATTCCAAAGGGAGGTACTCATGTATATTCAGATGATCATTGTTGATGATACCTCAGTTTTAGGAAGTGTTGGAGCATGTTTTAAAATTATGTTGGGAGGAGGCATCATGGAGGTTGTTGAATAGTTTTTATTCACTTTATTTTAGCTTTATTTGGAGACGGCGAGAGGTAATTTAGTTTCTACATTGTGTGCATGTATATATGGATTTAAGAGCGTCTGAATCAATATTATATAATTATATACATATATATATTGGCTTAATGATTTGTTATGTATTACTGTTATCAATTTAGTAACGTGTTGTATCCTGAGATAGATTGAAACTTTCAAAGAGTCTCTGTCGAAATTAACTCTATGAGAGGAAGTCGAGCATACCTAGATAATAAATCACCATAATTGTCGGCTGTCCAATAGATTCATTACATTTCTGATTCTGTAGACATGTATTTTAGTAACGAAGGGTTAAATGAAAATGCGAGCTGATTGATGGACCCGATGCTTTGAGGTGAGAGTTGGGGAATATCAGTTCCTTCTCAGTTAAGTTCTTCTATGAGAAGCTTCTGGTTAGGGCTTAGGTAAGTTTTCTGCATGCATCAGTCTGGATTCCTAAGGTGCCGAGGAAGGTGTGCTTCGTGTAGTTAGCTACTAGAGGGGTGATTTTGAGGGCAGAGAATCTTAGAAATGAAAGGTTGTATGCTTGAGCTGGTGTTTCCTTTGTAAGGAAGCGGATGAGGATGTGGACCATATTCTGTAACATTGCAAATCAGCTACCAGGTTATGGGAGGATATGTTCGGATCGTTTGGTGTTTCTTGGGTAATGCCAAGTTCCGTGAAGAAGTTGATATCCAGCTAGAAGAGGGGAGCTAGGAGAAGAAGACACAAGGCTTGAAATGTTACTCTACTTGCTTTGATGTGGGAAGGAGAGAAATCAGAGAGCTTTTGAAGTGGTGGAGATGAGCTCTACTTATTTGAGGAGTAGTCGCTGATCCCTTATTTTCTTTTGGTGCACTCATGTAATTCCTCTTTGTATAGAGGGTTGGGTTTCTTTTGGAGAGAACCATATTTTGTAGGCTTCTCATTTTTTTGGTATACCTCTTTTATATGGACGAGTTGGCGTAGCTATTATTAATGAAATCTTTTACCTGATTAAAAAAGTGTAATTGCATGAGCTTTTCATTAAAATCTTCTGTTTCAAGTAAAGTCTTGCCTGATCTGTGTACTTGACCGGTCACTTTTATACTTTGCTTCATTGATGACCATGTCATGTTGGTTTCAGCCAAGGTCCTTTTCCGGGAAAAGCAGATGCAAAGCAGGCAGAAGGGATGATAGAAGTAGAGTTAGGCTCAGAAAAACACAAGGAAGAAGAAAGCCAAAAAATAAAGCGAGACAAAATGACGAACACACCCAAGTCAAGCAGCAAAAAATCTGTGAGTGTGCATCTTCTGTTCTCTTTGATTTAATTATGTCCTGTTTTCTGAAGTTAATTGATCGATGTAAAATGAATGTCTCAAGTGGAGAACAATCTAGCTGTTAAAGAAACCTGGCAGACTCAGAAGAACTTAAGAGTGTAGTGTAGACGAAAAAAGCTCCCAACTTTTATGAGCAGACAAGTTCTGTTGCATGAATTTCTTATTTGAATCATGTGTGTGGTGTGTCCAAATATTTTCGCCTTAGATATGAAGTTGAGAATCTTATTTTTCTTATAGGATTCTGGACCTTCGTCGAGCAAATCACCAGAAAAGCACAAGGAAGAGGAAAGCCGGAAAAAAAAGCGAGACAAAATGCCAACCACACCCAAGTCAAGCAGCAAAAATTCTGTGAGTGTGCATGTTCTGTTCTCTTTAATTTAAGCATATCCTGTTTTCTGTAGTTAAAGGTTGATCGATGTAAGTGGAGAACCGTCTTGCTGCTTACAGAAACCTGGCAGACTAAGAAGAACTTAGTGTAGTGTAGACAAAAAATATCTAACTTCCATGAGCAGACAAGTTCAGTCACCATGAATTCCTTGTTGGAAACACGTGTGAGATGTGTCCTAATATTTCGCCTTTAGATTTGAAGTTAGGAATCTTATTTTTCTTGTAGGATTCTGGAAATTCTTCGAGCAAATCACCAGATAAACATAAGGAAGAGGAAAGCCGGGAAACAAAGCGAGACAAAATGCCGGACACACCCAAATCAAGCAGCAAAGAATCTGTGAGGGTGCATCTTCTGTTCTCTTTAATTTAATCATGTTCTGTTTTCTGAAGTTAAAGGTTGATCATCCATGTAAAATGAATATCTCAAGTGGAGAACGATCTTGCAGCTTACAGAAATCTGGCAGACTAAGAAGAACTTAAAGTGTAGTGTAGACAAAAAGTTCTCTAACTTCCGTGAGAAGACTCCTAATATTTTCGCCTTAAATTTAAAGTTGAGAATCTTATTTTTCTTATAGGAGTCTGGACATTCGTCGAGCAAATCACCAGAAAAGCATGAGGAAGAGGAAAGCCGAAAAAGAAAGCGAGACAAAATGCCGAACAAACCCAAATCAAGCAGCAAAGAATCTGTGAGTGTGCATCTTCTGTTCACTTTAATTTGATAGTGTCCTGTTTTCTGAAGTTAAAGGTTTGATCGATGTAAAATGGTCTCAAGTGGAGAACCATATTGCTGCTAAAGAAACCTGGCAGACTAAGAAGAACTTAAAGTGTAGTGTAGACTGTAGACAAAAAGTTCTCCAACTTCCATGAGCAGACAAGTTCTGTTCCATGAAAATCCTTGTTTGAATCATGTGTTTGATGTGTCCAAATCTTTCGCCTTAGATTTGAAGTTGAGAATCTTATTTTTCTTATAGGAGTCTGGACCTTCGTTGAACAAATCGCCAGAAAAGGCAAAAATCAATCTCTATTTTCCACAGAAAACTGAGAAGAGGTCTAGCAAAGTCCAAAATAGACTCGAGGGAAAAAGGGGGTCCGTGGATGAAGTGATTATAATTGATTCTTTCCAAGTTCCAACAACTTGTTCATAAAACTTGTATTTTGAGTTTTAGCTTATGCACTTGTGTTACCACGCACTTACTAAAAATCCTACTCTGATGTCACACTATATTACATTTGCATTTTCCTGAAATCACACTGTCCAAAAAAATTTCACTTGAGTTTCTTTTTATCAACGAGACGTAAAAACATCTTCAACTGATTACTTATCCCCCACTCCCCCCACCCCCACCACACACACAAAAAATAAAGAAGAGGAAATGATCAAAGGAGAACTTGGAGGTGTTAACTAAATCATAGTTTCTTGGAAACACGAGTACATAGATATCTATATATGCAATCTTTCAGAAACATTAACTCATTGGTAATGTTTGAATGACATTCAGGTGGCAGCTTCAGCTGGAAAACATACACTGAGCGCACGCCAAGTAAAAGTAATGCGCGAGCTTGGTTTAATGGCTCCGTCTGGGTCTCCATTTGATAAAAGGAAACATGTTGTTGCTCCTCCAAAACTCCCAATTATTCCCAAGGACCGTGTTTCTACGCCTAAAAGGCTTCCATCCAATCCTAAGGAACGTCTTCCCGCAATTGATAGAATAGTTGTTTGTGGTCTAGCTGCTGCTGGATTTGTCAATCGTGTGATGAAGTAGCTTTTGTTTCTCAACTGTTTGATCCTCAGTAACTTAGAGTTTGATGACAACCTAAACTACCAATATAGTGCTGAAGCTGTCAGCAGTGTTATACGAGAGGGGATGTAGGATTACAAGCTAGTGGGCGCGGAGTACTGTGCACCCACACTTGTTTTTGTAACAATGAGAATAAGTTATAAACTTAGCTTTTAGTGATACAGTTTAGAACATCTCAATTATAGGTATACCTCAAACAAAGAAGCGGGTACAGGTACACCCGCATCCCTCTACCCCATGTCTATGGTGATGTTGTGATATCAACTGTAGAAATGCACATTATG</genome_strand>
        <mrna_strand>GCCGGTTGTTAATTGAAGGAGAGTTATTGAGAATTAAAAAAAAAGTAGCTGGTATACGATAGCTGCAAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGTCCTTTTCCGGGAAAAGCAGATGCAAAGCAGGCAGAAGGGATGACAGAAGTAGAGTTAGGCTCAGAAAAACACAAGGAAGAAGAAAGCCAAAAAATAAAGCGAGACAAAATGACGAACACACCCAAGTCAAGCAGCAAAAAATCT.......................................................................................................................................................................................................................................................................................GATTCTGGACCTTCGTCGAGCAAATCACCAGAAAAGCACAAGGAAGAGGAAAGCCGGAAAAAAAAGCGAGACAAAATGCCAACCACACCCAAGTCAAGCAGCAAAAATTCT.........................................................................................................................................................................................................................................................................GATTCTGGAAATTCGTCGAGCAAATCACCAGAAAAACATAAGGAAGAGGAAAGCCCGGAAACAAAGCGAGACAAAATGCTGGACACACCCAAATCAAGCAGCAAAGAATCT..............................................................................................................................................................................................................................................GAGTCTGGACATTCGTTGAGCAAATCACCAGAAAAGCATGAGGAAGAGGAAAGCCGAAAAAGAAAGCGAGACAAAATGCCGAACAAACCCAAATCAAGCAGCAAAGAATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGCTTCAGCTGGAAAACATACACTGAGCGCACGCCAAGTAAAAGTAATGCGCGAGCTTGGTTTAATGGCTCCTTCTGGGTCTCCATTTGATAAAAGGAAACATGTTGTTGCTCCTCCAAAACTCCCAATTATTCCCAAGGACCGTGTTTCTACGCCTAAAAGGCTTCCATCCAATCCTAAGGAACGTCTTCCCGCAATTGATAGAATAGTTGTTTGTGGTCTAGCTGCTGCTGGATTTGTCAATCGTGTGATGAAGTAGCTTTTGTTTCTCAACTGTTTGATCCTTGGTAACTTAGAGTTTGATGACAACCTAAACTACCAATATAGTGCTGAAGCTGTCAGCAGTGTTATACGAGAGGGGATGTAGGATTACAAGCCAGTGGGCGCGGAGTACTGTGCACCCACATTTGTTTTTGTAACAATGAGAATAAGTTATAAACTTAGCTTTTAGTGATACAGTTTAGAACATTTCAATTACAGGTATACCTCAAACAAAGAAGTGAGTACAAGTACACCCGCA-GCCTCTACCCCATGTCTATGGTGCTGTTGTGATATCAACTGTAGAAATGCACATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345874" ref_strand="+" ref_description="SGN-U345874        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:25930226-25931229 FORWARD | Aliases: None(evalue: 3e-57, score=219) genbank/nr: expressed(evalue: 8e-57, score=223)">
      <seq>ctgattatcacttgtgacggctgttaaaggagataaaatcaaggtagcaataatggtggaatggtggtggtctgttcttggagctgcagtaccagctgtaatggcagggcaagctttcaggacgaagaaaaggagagatgaggaggagaggttaaacagggccagaggtcgtgagaagaactcggatgatatctttgtttgtgaaagagtgtgtacttcaaacaggatgctgaagaaggttggtgcattttctaaagacccgacacctgatacttgtgttactgtttgtggtgtttctgagctcgatgcttgtgctgatgcgtgtgctcggactgtttgtgttaaccagcaccaagtacctaactggaatgatatctgtcttaagaggtgtcaaagtgagtgtcttaggctctcacaatcttctgtagtgtcttcttagcaatattgctctcaacattttgcttccatcatttcaacaattctggttctattgacaatcttctcaagttcatgaatactatttatggtatctatttcgactattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="62744" stop="66701"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63044" g_stop="63086" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="63087" i_stop="65898" i_length="2812">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65899" g_stop="66409" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="554" r_length="511" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U345874" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63044" e_stop="63086"/>
          <exon e_start="65899" e_stop="66409"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGATTATCACTTGTGACGGCTGTTAAAGGAGATAAAATCAAGGTATGTTCCCTTTTTTAGCTAATAAAGTGTTTATTTTCGCAGTATATGGTTGTTTCTCTATCCCCTTTGCATATATGAAGATTACATTTCTTGAATAATATGGAAAAAAGTCTCTCAATTTGACATGTTCTTGATGTTTTATGACACCCATCTGCACATATTTTGTCATGCTGTTGAAAAAAATTGATCTTTTTTGCATCTGATATGCTATGTGTGTTTAACACTTGGAAGGTGTTTGATGAACCCTTGTTCAGCCATTGTTAAAGTTTGAAGTTTTAGCAGTTGTTCTTGTTAAATGATTAGTGCTGAGTCTCTGTGAGCAGATGTGAATCTAGAATTTTAAGTGAGTGGTACAGAATACAACCACAGTCATTACTCCTTTTGTGGTAAGCGAATGTGAACTTAAGACTAGTAACAGAGACAGAATTGAAATTAATGGTGTTTCAAGAGTTTAGCCCTTTTGAGTTATTGTGTTCTAATTTGATAATTTGGACATACAAAAATAAATACACAGTTTAAACAAGATAGGAAGATAAAAGAGGTTGAGCGTTGTCTAGTTCCATTTTTGTATTGTTATTGTTACTCTCTTGCTATCGTATTCGTCAATTTTAATATTACCTGATAAAAGGAATAGTCACATTCTTATAAGAAGCCCAAAGAATTCATTAAGAATGAGTGCAACTTAGTCTATTGTATGCTCAATGCTGGTTTAGTATGGCAAGGGAAGGTTGAAGTAAGTTTCATTCATTTGGAGAACTTGGCGCAATTTTTTGTTTGACTGAGGTGGAAAAGACATTGTAAGTGAGGTGGTTAGAAAGACCGCTGTGAAGATTGCAGCAAAGAATCTTTTGTAAGGTTAAGTTTGCATTAATCTCTGAGGATGAGAAGGTCATCCTCATGTTTATGGTGATGTGTTAGAAAGTAAAGGTCATTTTTTGGATTGGTTTGTTGCAAATTTTAAGATTTTAGTTCCATAAGTTGCAAGTTGCTTTTAGTGGAGCACTCTTCATAACATCCTGCTTGCGTATAAGGGTTGTAGTTACTGTTACAAGAACAAAGTTTTGAAGGGCATGCGAGTATCTAGCTAGTTAGGAGTGGTGTAATATGAACATTATGTTCTGTGTGGAGCTTACTTTATCATCAGAGCAGAAAATTGGTAGTGATTTGCAAGAATTATGCAAATTCATCCGGCCAATATGATTGCTATTGTGTGTGACAATGATGGAACAAGAGGTAGCATTCATAGCAGAATAGCTGCTTCAAACAATAGCAATGACTATTACTCGTTGTTGCACCCAATTTCCTTATCTTCGTGATATCTAAGTATAATGGCTTGAGAGACTTTCACGGTAGCCATCCATTCTGCTACCGGCTTCCACGGTAGAGTCTCGTGTCACCACCGGTGAAACAAAAAGAAGGCAAATGTACATTTTCCCTTTTGTTTGCTTTCTTTTCATACAAAAAATGTGCAACCACTCATTAAGGGGGTGTCTGTTACGAAGGAAAATGTTTTCTATGACTATTTTGTATACTAGTTAGTCAAAAGTGACCCAAGTAATACATTTTGATGAGGGTTGGAAGGTCTTACTGGAACAAGCTTGAGTTAAAGTGTTAAAATTATAACTGAGGTCAAGTTTGAGTGTTTTGCTCATGTCTTTGGCCTTAATAAAATGAAGTCATCATCAACAACATACCAGTATAATTCGGATGTATACCAACCTTACCCTTACTAATTGAAATCGTTGTAATCTTAACTAGGCTTATAGGGTTTAATATAAAATCTATGAAGATGTAACTAATTTCACTTTTCTTTATTCCATAGTTTGTTTTATGAAAGGTATGGGGTGTTCTCATTTACATTTTCCTCCTACTTTTTTTTATGAACTTTAGAAATGAAATACGTGTTTCTTACCTCAAAATCATCAATTTTTAATCAAATAATTATTGACTTTTTATCATACCAACGAAAATCATTTGAAAATGAGTTTATCTGTCGATGCTAACAATATTGTTCAAGGTAAATTAATCAATATTACTCATGTTGCTTAAGCAAATTTGCGACCAGCACGCCCTACTGGGTGTTTTCTTGAATAAGATGCTTGCAGAAGGATTCAGATAGAGAAATAACTGATATGATTCACTGCGCCTCCAAGCAACTGGATGGTACAATTTGGTCAAGAATGGAATGAGTATGATTTGTTTCAGAGCATTCTTCTTGGTTCTTACTAAAGAGTGGGTTCAGTATTGGGCATATTATAAGGGCTTTCTTTAGCCTTGAAATAGTTGAGGCTTAATATATATTATAAGGCGTAAGCATTTTGGCAAGCTAAAAATGTGGTGGATTGCTCATTAGACAACTTGTAGTCATTATATAAGTCCTATTTTTATTTTTCATACATAATGGTGGTGTTTGAGCCAACTTGATGTGTACCTCGTCTCTAGCACAGGTATATGGTATTAGACTCTCCTGTGGTAATTTCCAGTTTCAACTTGGATACAACTCAATGATAAAGGGAGCATAAGTGATGGTTATCTAAAAATGGAGGCATAAATGATATGTTCGTGTTATTCAGTTAAGCTAAAAAGCATAAGAGGAACGCATAACGTACAACTACCCCTTATTTCTTGAACACATCCTAATTTCAGGTTGAGCCAAAATATATCGATCATTTGGATGCATTTGTTGCATGAATCTTTGTTTTGTTTTACGTTTAAGTTGTTTGTGTTGTTATGCTAATTCTTATTTTACACGTGTCTAATCACGGATAGTCAAGGACAAGGTCGAAGCCTTGAAGGCTATAGTATTCTTCAGGTAGCAATAATGGTGGAATGGTGGTGGTCTGTTCTTGGAGCTGCAGTACCAGCTGTAATGGCAGGGCAAGCTTTCAGGACGAAAAAAAGGAGAGATGAGGAGGAGAGGTCAAACAGGGCCAGAGGTCGTGAGAAGAACTCCGATGATATCTTTGTTTGTGAAAGAGTGTGTACTTCAAACAGGATGCTGAAGAAGGTTGGTGCATTTTCTAAAGACCCGACACCTGATACTTGTGTTACTGTTTGTGGTGTTTCTGAGCTCGATGCTTGTGCTGATGCGTGTGCTCGGACTGTTTGTGTTAACCAGCACCAAGTACCTAACTGGAATGATATCTGTCTTAAGAGGTGTCAAAGTGAGTGTCTTAGGCTCTCACAATCTTCTGTAGTGTCTTCTTAGC-ACATTGCTCTCAACATTTTGCTTCCACCATTTCAACAATTCTGGTTCTATTGACAATCTTATCAAGTTGATGAATACTATTTATGGGTATCTATTTCGACTATTCATCGAGATA</genome_strand>
        <mrna_strand>CTGATTATCACTTGTGACGGCTGTTAAAGGAGATAAAATCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGCAATAATGGTGGAATGGTGGTGGTCTGTTCTTGGAGCTGCAGTACCAGCTGTAATGGCAGGGCAAGCTTTCAGGACGAAGAAAAGGAGAGATGAGGAGGAGAGGTTAAACAGGGCCAGAGGTCGTGAGAAGAACTCGGATGATATCTTTGTTTGTGAAAGAGTGTGTACTTCAAACAGGATGCTGAAGAAGGTTGGTGCATTTTCTAAAGACCCGACACCTGATACTTGTGTTACTGTTTGTGGTGTTTCTGAGCTCGATGCTTGTGCTGATGCGTGTGCTCGGACTGTTTGTGTTAACCAGCACCAAGTACCTAACTGGAATGATATCTGTCTTAAGAGGTGTCAAAGTGAGTGTCTTAGGCTCTCACAATCTTCTGTAGTGTCTTCTTAGCAATATTGCTCTCAACATTTTGCTTCCATCATTTCAACAATTCTGGTTCTATTGACAATCTTCTCAAGTTCATGAATACTATTTAT-GGTATCTATTTCGACTATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319376" ref_strand="+" ref_description="SGN-U319376        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | DNAJ heat shock N-terminal domain-containing protein, simlar to AHM1 (Triticum aestivum) GI:6691467; contains Pfam profile PF00226: DnaJ domain | chr2:315725-316992 FORWARD | Aliases: T8O11.12, T8O11_12(evalue: 5e-68, score=255) genbank/nr: gi|18379283|ref|NP_565276.1| DnaJ protein family [Arabidopsis thaliana] gi|25410924|pir||B84428 hypothetical protein At2g01710 [imported] - Arabidopsis thaliana gi|4220477|gb|AAD12700.1| expressed protein [Arabidopsis thaliana] gi|15529208|gb|AAK97698.1| At2g01710/T8O11.12 [Arabidopsis thaliana] gi|22655052|gb|AAM98117.1| At2g01710/T8O11.12 [Arabidopsis thaliana](evalue: 4e-66, score=255)">
      <seq>aatctttttacactcgatagttacaccccactaccccccaccccaccccctcttcctcttccccaaatcaaccatcaatttctccgtctccatttcagatcaaacccccaaagccctaaaatccccaaaaattgaggaaaaaatggagcatcatacaactacaagcagagcagaagcagagagactgttaggagttgcagaaaagctgttaagagataaagaatttgccccttgtaaagattttgcacttcttgctcaagaaaccgagcctttacttgaaggacctgaccagatcttagcaattgctgaagttcttttagcttctgttaaacgaatcaacaatcaccatgattggtactctattcttcaaatccaaggtcgtactgaagattcagagcttatcaagaaacagtatcgtcgtcttgctcttcttcttcatcctgataaaaacaaatacccatcttcagatactgctttcggccttgttgctgatgcttgggctgttctttcagatccatcaaaaaagggtctttatgataatgaactttccctttttggtagagttaaattgactccttctgctcgacgaggaagacctagagggagttataataagcagaagaaaggagatgcgaagttacctgtgaggaggagtagtcgagcgagtaattcgggttcgggtcaaaatcagaaccctaatcccagtccggtgagtcagaagagttatcatagtgcgccgccgaaggctacggcgccggcgccgatgagtggtgcgatgagagggcaaagggtggtgaatttgtggacggcgtgtccgtattgttacaatttgtatgagtatcctagggtttatgaagggtgttgtttacgatgtgataaatgtaaaagggcttttactgctactgagattttgtcaatgccaccaatggtgccagggaaagaagcttattattgcatttggggtttttttccaatgggttttgtgaatgggaatttggaggatttgggtactgtgaaaggagctgctgctgctgctgcaactactggtgcatttccaacttggatgccaccgatgttttcgactcaaaatgctgcgaataatcaacaaaatgctactccaattccagctacggttcaggtaacgaatccagcgccagcgcggcctcaggctcctcctcctgctcctcctcctgctgctgctgctcccagaccaatgtcgacaggacctaagaaaagaggtaggcctaggaagtataactaaaaaaggtttgatttttatggtttgtctcaagaattttgagtcttatggagattataatgtttagtttgatcaagtcgactggaattgaatgatcgatcgaatcttgtagtaagttgagtagtgagcaaaagtagttgcttttctttactcatcatatgaagaagtatataactgcagaactgtgctgtagcttgttcttgttagatgccttgtgtttgtagaaatttctcgttgttggtagattttctgcggtttgtaggtactatatttattcaattttcaagactcgtagtcatagactcgttttgtaattgaatgatctttatgccaaatttcgaaattctaatttctgtctcgttcaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaataaaaaaaagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="68555" stop="38805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68255" g_stop="66660" g_length="1596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1617" r_length="1617" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66659" i_stop="65838" i_length="822">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.60"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65837" g_stop="65781" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1618" r_stop="1674" r_length="57" r_score="0.632"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U319376" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>1653</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U319376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68255" e_stop="66660"/>
          <exon e_start="65837" e_stop="65781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTTTTTACACTCGACAGTTACACCCCACTACCCC-----CCACCCCCTCTTCCTCTTCCCCAAATCATCCATCAATTTCTCCGTCTCCATTTCAGATCAAACCCCCAAAGCCCTAAAATCCCCAAAAATTGAGGAAAAAATGGAGCATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTGTTAAGAGATAAAGAATTTGCCCCTTGTAAAGATTTTGCACTTCTTGCTCAAGAAACTGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTTAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGTCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTCGGCCTTGTTGCTGATGCTTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTGGTAGAGTTAAATTGACTCCTTCTGCTCGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCGAAGTTACCTGTGAGGAGGAGTAGTCGAGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCTAATCCCAGTCCGGTGAGTCAGAAGAGTTATCATAGTGCGCCGCCGAAGGCTACGGCGCCGGCGCCGATGAGTGGTGCGATGAGAGGGCAAAGGGTGGTGAATTTGTGGACGGCGTGTCCGTATTGTTACAATTTGTATGAGTATCCTAGGGTTTATGAAGGGTGTTGTTTACGATGTGATAAATGTAAAAGGGCTTTTACTGCTACTGAGATTTTGTCAATGCCACCAATGGTGCCAGGGAAAGAAGCTTATTATTGCATTTGGGGGTTTTTTCCAATGGGTTTTGTGAATGGGAATTTGGAGGATTTGGGTACTGTGAAAGGAGCTGCTGCTGCTGCTGCAACTACTGGTGCATTTCCAACTTGGATGCCACCGATGTTTTCGACTCAAAATGCTGCGAATAATCAACAAAATGCTACTCCAATTCCAGCTACGGTTCAGGTAACGAATCCAGCGCCAGCGCGGCCTCAGGCTCCTCCACCTCCTCCTGCTGCTGCTGCTGCTGCTCCCAGACCAATGTCGACAGGACCTAAGAAAAGAGGTAGGCCTAGGAAGTATAACTAAAAAAGGTTTGATTTTTATGGTTTGTCTCAAGAATTTTGAGTCTTATGGAGATTATAATGTTTAGTTTGATCAAGTCGACTGGAATTGAATGATCGATCGCATCTTGTAGTAAGTTGAGTAGTGAGCAAAAGTAGTTGCTTTTC--TACTCATCATATGAAGAAGTATATAACTGCAGAACTGTGCTGTAGCTTGTTCTTGTTAGATGCCTTGTGTTTGTAGAAATTTCTCGTTGTTGGTAGATTTTCTGCGGTTTGTAGGTACTATA--T-TT--A--TTC-A-A-T--T-GTCA-AGACTCGTTTTGTAATTGAATGATCTTTATGCCAAATTTCGAAATTCTAATTTCTGTCTTGTTCACATTTTTCTGGAGTTACTCTTTGAGGCATGGTGGTTGTTATTTTGTCTAGTGTGTAAAGTTTTGATCAGGTACCTGATGTTCTCTCAAGTTTTTCGTAAATTTCATGTATATGTTGTTCGTCTATTGGATTGAACACCTTCTGTCTGAAGACTGTATTTGTGCTTTAGCATATTGACTAGTTTAGAATTCTTTTTGAATTAACGGTTCACGGGTAAATATGTGTCTAAAGATGAATGATACTTTTTATCTCGATGAATAGTCGAAATAGATACCCATAAATAGTATTCATCAACTTGATAAGATTGTCAATAGAACCAGAATTGTTGAAATGGTGGAAGCAAAATGTTGAGAGCAATGTGCTAAGAAGACACTACAGAAGATTGTGAGAGCCTAAGACACTCACTTTGACACCTCTTAAGACAGATATCATTCCAGTTAGGTACTTGGTGCTGGTTAACACAAACAGTCCGAGCACACGCATCAGCACAAGCATCGAGCTCAGAAACACCACAAACAGTAACACAAGTATCAGGTGTCGGGTCTTTAGAAAATGCACCAACCTTCTTCAGCATCCTGTTTGAAGTACACACTCTTTCACAAACAAAGATATCATCGGAGTTCTTCTCACGACCTCTGGCCCTGTTTGACCTCTCCTCCTCATCTCTCCTTTTTTTCGTCCTGAAAGCTTGCCCTGCCATTACAGCTGGTACTGCAGCTCCAAGAACAGACCACCACCATTCCACCATTATTGCTACCTGAAGAATACTATAGCCTTCAAGGCTTCGACCTTGTCCTTGACTATCCGTGATTAGACACGTGTAAAATAAGAATTAGCATAACAACACAAACAACTTAAACGTAAAACAAAACAAA</genome_strand>
        <mrna_strand>AATCTTTTTACACTCGATAGTTACACCCCACTACCCCCCACCCCACCCCCTCTTCCTCTTCCCCAAATCAACCATCAATTTCTCCGTCTCCATTTCAGATCAAACCCCCAAAGCCCTAAAATCCCCAAAAATTGAGGAAAAAATGGAGCATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTGTTAAGAGATAAAGAATTTGCCCCTTGTAAAGATTTTGCACTTCTTGCTCAAGAAACCGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTTAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGTCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTCGGCCTTGTTGCTGATGCTTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTGGTAGAGTTAAATTGACTCCTTCTGCTCGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCGAAGTTACCTGTGAGGAGGAGTAGTCGAGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCTAATCCCAGTCCGGTGAGTCAGAAGAGTTATCATAGTGCGCCGCCGAAGGCTACGGCGCCGGCGCCGATGAGTGGTGCGATGAGAGGGCAAAGGGTGGTGAATTTGTGGACGGCGTGTCCGTATTGTTACAATTTGTATGAGTATCCTAGGGTTTATGAAGGGTGTTGTTTACGATGTGATAAATGTAAAAGGGCTTTTACTGCTACTGAGATTTTGTCAATGCCACCAATGGTGCCAGGGAAAGAAGCTTATTATTGCATTTGGGGTTTTTTTCCAATGGGTTTTGTGAATGGGAATTTGGAGGATTTGGGTACTGTGAAAGGAGCTGCTGCTGCTGCTGCAACTACTGGTGCATTTCCAACTTGGATGCCACCGATGTTTTCGACTCAAAATGCTGCGAATAATCAACAAAATGCTACTCCAATTCCAGCTACGGTTCAGGTAACGAATCCAGCGCCAGCGCGGCCTCAGGCTCCTCCTCCTGCTCCTCCTCCTGCTGCTGCTGCTCCCAGACCAATGTCGACAGGACCTAAGAAAAGAGGTAGGCCTAGGAAGTATAACTAAAAAAGGTTTGATTTTTATGGTTTGTCTCAAGAATTTTGAGTCTTATGGAGATTATAATGTTTAGTTTGATCAAGTCGACTGGAATTGAATGATCGATCGAATCTTGTAGTAAGTTGAGTAGTGAGCAAAAGTAGTTGCTTTTCTTTACTCATCATATGAAGAAGTATATAACTGCAGAACTGTGCTGTAGCTTGTTCTTGTTAGATGCCTTGTGTTTGTAGAAATTTCTCGTTGTTGGTAGATTTTCTGCGGTTTGTAGGTACTATATTTATTCAATTTTCAAGACTCGTAGTCATAGACTCGTTTTGTAATTGAATGATCTTTATGCCAAATTTCGAAATTCTAATTTCTGTCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAATAAAAAAAAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320376" ref_strand="+" ref_description="SGN-U320376        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | short vegetative phase protein (SVP), identical to cDNA short vegetative phase protein (SVP) GI:10944319; | chr2:9586957-9590966 FORWARD | Aliases: F14M13.6, F14M13_6, AT2G22550(evalue: 1e-59, score=226) genbank/nr: gi|55792850|gb|AAV65507.1| MADS16 [Solanum tuberosum] >gi|55792844|gb|AAV65504.1| MADS16 [Solanum tuberosum] (evalue: 3e-114, score=414)">
      <seq>gtgaatagtacttattccatctccaaaattaggtcttacatatttctatactcaattattggcccatttttgtataggttttctaactagatctaaagttttcctcttttattagggtttcttacaatttcttactatttatatcttttgtgagatttcttagaaagtttgaggaaagataattagcttcttcgacctgttaaggatggcaagggaaaagataaaaataaaaaagatagataatataacagcaagacaagtaacattttcaaagaggagaagagggctttttaagaaagctgaagagctttctgttctttgtgatgctgatgttgctcttatcattttttctgctactggaaagctatttgattttgccagcaccagcatgaaggatattcttggaaagtataaattgcaatcagctagccttgagaaagttgaccaaccttcccttgatttacagctagagaatagcctcaacatgagattaagcaagcaggtagctgataaaactcgtgagctcaggcagatgagaggtgaggaacttgaaggattgagtttagaagaattacaacaaattgagaaaagacttgaagctggtttcaaccgtgtgcttgagattaagggtaaacgaataatggatgaaattaccaaccttcaaagaaagggtgctgagctgatggaagaaaacaaacaattgaaacacaaaatggaaattatgaaaaaagggaaattgcctttagtgactgacatggtgatggaagagggccaatcatctgagtctataattacaactaataatcctgatcaagatgattcatcaaatgcatctttgaagttaggtggtactactgcagttgaagatgattgctcaattacatctttaaagttagggctaccattcagctaacaaactcaaaggaggaagcttttgttgaagattgtactaataataatttttggatgataacaatcagtggcatatatatatatatttgccttcttttggaaaaaatattacattggaatataattgtcactgcttaattctactatgtattatatgtatgtatgtggacaacttgacaaagggcataatgcagattgattaaccatctcaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="73354" stop="80173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73654" g_stop="73857" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="204" r_length="204" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73858" i_stop="73989" i_length="132">
            <donor d_prob="0.990" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="73990" g_stop="74172" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="387" r_length="183" r_score="0.995"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74173" i_stop="76621" i_length="2449">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76622" g_stop="76700" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="466" r_length="79" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76701" i_stop="77300" i_length="600">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77301" g_stop="77362" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="528" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77363" i_stop="77661" i_length="299">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77662" g_stop="77761" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="628" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="77762" i_stop="77846" i_length="85">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="77847" g_stop="77888" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="670" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="77889" i_stop="78199" i_length="311">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="78200" g_stop="78241" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="671" r_stop="712" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="78242" i_stop="78390" i_length="149">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="78391" g_stop="78524" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="713" r_stop="846" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="78525" i_stop="79305" i_length="781">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="79306" g_stop="79356" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="847" r_stop="897" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="79357" i_stop="79647" i_length="291">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="79648" g_stop="79872" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="898" r_stop="1122" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1123" polyA_stop="1136"/>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U320376" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1122</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73654" e_stop="73857"/>
          <exon e_start="73990" e_stop="74172"/>
          <exon e_start="76622" e_stop="76700"/>
          <exon e_start="77301" e_stop="77362"/>
          <exon e_start="77662" e_stop="77761"/>
          <exon e_start="77847" e_stop="77888"/>
          <exon e_start="78200" e_stop="78241"/>
          <exon e_start="78391" e_stop="78524"/>
          <exon e_start="79306" e_stop="79356"/>
          <exon e_start="79648" e_stop="79872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAATAGTACTTATTCCATCTCCAAAATTAGGTCTTACATATTTCTATACTCAATTATTGGCCCATTTTTGTATAGGTTTTCTAACTAGATCTAAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTATCTTCTTCGACCTGTTAAGGTAAGAATAAGATCTGTGTACATTCTACTGTCTTCAGATTCTACTTGTGAAATTATACTGTTACGATCGTAAATATAGTGTATTTTGGTGTTGATATAGATTGATTTTTTTTAATTTTTTTTTTTTTTGAAGGATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCTAGCACCAGGTAAAATCTCGAGATAAAATGAAGGATTATTTTATGCGACTTTTAAATTATTAATTCTTACGATTATTATCCTATCATCGTTAATATATACCAAACAGCTTATTTGGTCGGGGAATAAGTTATTACAGGATTGTTATTTTAAATAAAATTATAATTTCGAAATTTATTATCTCTTATAAAACTTTAGAAAATGAGATTAGCTATCCTGAGATATGTTTTTTTTCTCGATAATTAATGAATTTACATATAATCAAATATTTGGGTTGGTAGGATGTTTTAAAGGAGCTAGGGAGTGTAAGCTAAGGTGTTTTTTTTTTTGGTTGCTTAATTTATTTGTATTATTTAAAAAAAATTATTTATTAGAATAAGACGTAATTTTTTATTTTTATTTTTTTCGTCTAACAAAATAAATGTCATTTAGCAATAAAAAATATAATTAAAAAAGAATTGTCGTTTTAGGAATGTAAGACAATAATTAGTAATTATTTTTTTTTAAAAAAAACTATACCATTATATATTAAAGAACCACTAACTTGTTCTTAATACATCTAATTATTATAAAATAAATATATATATGGGTAACAATAAATAATATGTATTTATTGTTTTTCATAATGCACGTGAAAAAGATTAAAACAATAGATGTAGAGAGTACTCTTACCTTCAATATCCTATACGGTATATTTAAGATTACAAGACTCAATCAATATTCTGATACATTAAAAACGAATATTTAGGTTAAGATCACGTGATTTAAATTTAAACTTCCTTTCAAGTCAACAAATTGAAACGAAAGAGTATATTATATAAAAAAAAATTGTTGTGTATATATCCAACATAAGTTGAATTCCATTACTAATAAGATCATACATTGTCTATGCCTCGTTAATTAATTAGAGTATACACTTTACGATAATAACATCATGTTAATCGAGTTTTAAAATGATAGATATACAAATTTTGTATTTATTTATGTAAGATAGAAAAATTATTTTCGATCGGAATAAAGCTTTTGTCTGTTTTGTTGTGACAAGAGGAGCAAAGACAACAAACTGTAGTTTCATAGGGTTTCTTCAAACAAGAAAACCTCGTGTCTCACATTTAATTACCCCTTTTTGTTATTAATTTATGATTATTTATCCTAAAAAACAGTGAATTAACTAGAAACCATAGGTATTACTTCTGTTTTTATCATCTAGATACTTCTTTATTACATTAAATATATATTTTTCCGTTCATTTTTACTTATTTGATTTAGATTTTATACTTGAATATTTTATTATAATATTCATATTAATTGTTGTATAATATTAAAATTTTGAAATAAATGATTTGTTGAATCTGTCTGTCTAATTTTATGTGACAATGTTTAACTTGATCTAATGTTAAAAGAAAAGAAAATATTTTTTTTTTGAAATTTGTAATCTAAGACAATTGTTATATGTATTTGTGTAGTTATATATAATTTCATAAAACGGGAAATTTTAAAATTAAATTATATTTAATTATAGTAAAGTTATATATTCTTTTTTGGAAAAGTTAAAAATGAAAATATACCATAATGAGTGTATTTTCCCTTTTCGATAGTCAAATTAATTATCTTTAACTTTGAGCAACTATTAAAATTACAGATGAAGTGATTTTTTCTTTTTTTTTTTTTAAAAATAAAATAAAATAATTAATGGTCAATTTTTTTCAACAAAATTACCGATAGTGAATTTTGTAAATAATCAAGTGGTTAATTTACTCCAAAAACATTTAAATTTAGTGTCAGTAATCCCTGTTTAGTCAAATCATTCAATTTCATCAGTCATTTATTTACTGGATAAGATAAGATATGTCAATTACTATTTATTAGTACAAATATGTCTTTTGGAAAATGGGAGGGCCATAATTAAAGGAATATTTTGCAGCTACAATCATAATTTATTTCCCAATTAGGAACTAACTAATGATATGACAAATACTTAACCCGATCAGATATTTATATCAAATCAATTTATGCACTATAAATATATATATATATAGTAAGTAACAAAGTTTGTGATTAGAGTGATAATGTATTATATTTCTTCATTCTCAATTAAAAATTTCAAGTTCGAGATCACTTGTTACGAAGTTTACTTACCTCAAATTTTCCGATGTAAATTCGGACAATTCTTATCTGATAAGTTAGTTTTTTTTAAAAAAAAGTTGAGTTGGAATCAAATTCATTTTTTAAATCATGTCATCAAAACCAGACTTATCCAAATTTATAATTTATTTGACATATCAGACTCTTGTCTTAGATTGTGCACAATAATTATTTTCATTGTTTAATTTAGACAATTCTCACCTTATTCAGTATTAGCATTTGAGATCAAGTTAAATTCACGATTATTTATAATATATATTGATTAAGACTTGAATTAATTGACAAAATAATTAATTTTCTTGTTTATAAATGCAGCATGAAGGATATTCTTGGAAAGTATAAGTTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAGGTAGTAATTATATATACTTTATACTAAATTAATAAAGTAAAAAAATAAGAGCATTGTTTTATTATGCACAAAAATATATTTTATGAGTAACCTATGGTTTTAAATTAGTGAAGTTAATTATCATAATTAACTGATGTGAAAATATATATCTCTTGCTCCATCTCTCTCAAATTATTTATCGTGAAATAATTTCAAAATTATTTCTCAAATTAAAGTTTAAGACTTATTTTTTTTCATTTTAACGTAAATAGTATATATATGTATTTTTAAAGATTACAAATACTTTAATGATATATTGAATAAAAAGAGATTATGTATTAAGACATAAATAATAACATATTCGATACATATATACATGAAAAAGAAATAACGACATGCAAATTGAGACAGGAAAATATAAACTATAATCTAGTGACAGTGTATATGTAAATAAATATATATATTTTTGTTTTTGTTAGTTGCTCTAAATACTCTAACTTTGTTAAATTCTTACAAAATATCAAGTAGGCTATAATTACATCTACTTAATTAATTAAGCTACATATATATATTTTAATTTATTAACCTTTTTATTGCTTATAAATCATCATCATTTTGTAGCTAGAGAATAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTGAGCTCAGGTATGTGTTAACTTGTACGCACCTCAACTTTTTACTAACATAAATATCGATACTTTTAGTTCAAATTTTGAAATAAATAAATAAAAATTAACACGTATTCTCAAGTGTCTGTTAGATAGTTACGTTAACGTATCATCTCTTTTACACATCAGCCTTAATTGAAACAAGTCTGTGGTTTTATTACAACTATTGATGCTAAAAGCATATAAAGAAACGATATATTTTAATTGATTAATTTATCTACGTAGTGAACACTCGAAATACTTATTGATATTTGTGTATGTGTATATATAAATCAGGCAGATGAGAGGTGAGGAACTTGAAGGATTGAGTTTAGAAGAATTACAACAAATTGAGAAAAGACTTGAAGCTGGTTTCAACCGTGTGCTTGAGATTAAGGTTTAATATTTTTTGTTAAAAAAAATTATAGTACTTATGCTAATTAAATAAATTTTTAATACCTTTAATTTTTTTTTAATCTCAGGGTAAACGAATTATGGATGAAATTACCAACCTCCAAAGAAAGGTTAGTACAATATCTTTTACTATAACGGGATCAATGCACAAAATATTCTGTATTCATGAATGATTAGGAAAATATTGTCGCATGCACCTTGAGAGGGTGTAATTAGGTCATGTACCCTAACGCAAGCATCATTACTATCCACACGATTCAAATATGTGACCTATTAGTCACATTTACACTAGAAAATCACTAATTATTTAATAAATATCTCATTAGAATTTGACTCGTTGTTAAAGGTTTTCAACAGGAAAACCAGTCTTTGACTAAATTTTTCTTTTTTTGTCATTTTTTGACTCATGAAATCTTTTCAGGGTGCTGAGCTGATGGAAGAAAACAAACAATTGAAACACAAAGTAATTAAAATCCCCTTTAGAATTAATAACCTTTTTATGTACAATTTAATTTTTTTTTAGTAAATTAGTGTTAATTAATTTGAGTAATTTTCATCATATTCTAATAGTGTTTATTTATATATATGTGTTATTTTAATTGTGCTACTTAGATGGAAATTATGAAAAAAGGGAAATTGCCTTTAGTGACTGACATGGTGATGGAAGAGGGCCAATCATCTGAGTCTATAATTACAACTAATAATCCTGATCAAGATGATTCATCAAATGCATCTTTGAAGTTAGGGTAAGCTTGCTTATACTCTTATAACTTTGATGGATTTTAACTTGTTACATAATTACGTGCCATAGTTTCAGTTTTTCGACGACAAGATCTTTGATAGTAATTAGATCGAGTAGTGTGGAGACTGTGAATTATGATAGAAAGTTGGTAGATAGTTGAACGTTATTTCCTTTCCTTTCTCTGTGTATATGTACTCCGATCCCTCTGACGTTTCAGTTTGATTGTCTAGTTTTGACTTGAAACAGAGTTGAAAAAAAATAAAGAAGGCTTTTGAATCAAATGGTCTTACATTAAAGATATGTTGAACGTACTAAAATGATCTTTAATTTGGTGGTCTTCATATATCACGTGAGAGGTTGGAATTAAAGAGTTGCTAAAAATGTGAATATGCTAATTTTTTTTAGATTAAATAGCAAAGTAAGACGAATGAATTGAAACAGAGAGTGAGGATATTTCTTGTTTTCATTATTTTTAGATTTCACTTTTATTACCTGTTGTTCCTTTTAGCTTGAGTTAATTTAGTATCTTGTTGATATTGCTTTCTTTTTATCGTTCTATAAGTCAATGGTTTATCGAAACAAATTTTTTTTTATTTTTGAAGATAAAGATAAGGTTCGTATGCACTTTTATCTTTCTTAAACATGACTTGTGAAATTATAAATATATTTATTAGTGTTTGTTACCATCAACCTAATTTAACTTGTTATATAACATGTTTATTGATCTTATATTCTATGTTACAAGTTTTACTAATTACTATAATCTTTTGTCTATGTTGTAACAGTGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGGGTAAGATTTGTTTATATTTTTCATAGAATCATGTATGTATGTATATATATATACACCCCTGCTTCGTTCGTCTCAATTTATACAATGTAGTTTGACTTAATTCTTACAAAGTTTAAATTTTTTTTTGAAACTTGTAGTATAAAATAAATCATATATATATATATATATATATATATATATATATATATTTGTGTGTCTGTGGATCGCTTCATTAGGATAAAATAAACATTTTAAAGTTAAATTGTTATTATATTTATTGGAAATTAATTAAATTTGCTATTTATTGATCAGGCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGTATGTATGTGGACAACTTGACAAAGGGCATAATGCAGATTGATTAACCATCTC</genome_strand>
        <mrna_strand>GTGAATAGTACTTATTCCATCTCCAAAATTAGGTCTTACATATTTCTATACTCAATTATTGGCCCATTTTTGTATAGGTTTTCTAACTAGATCTAAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTAGCTTCTTCGACCTGTTAAG....................................................................................................................................GATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCCAGCACCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGGATATTCTTGGAAAGTATAAATTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGAATAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTGAGCTCAG...........................................................................................................................................................................................................................................................................................................GCAGATGAGAGGTGAGGAACTTGAAGGATTGAGTTTAGAAGAATTACAACAAATTGAGAAAAGACTTGAAGCTGGTTTCAACCGTGTGCTTGAGATTAAG.....................................................................................GGTAAACGAATAATGGATGAAATTACCAACCTTCAAAGAAAG.......................................................................................................................................................................................................................................................................................................................GGTGCTGAGCTGATGGAAGAAAACAAACAATTGAAACACAAA.....................................................................................................................................................ATGGAAATTATGAAAAAAGGGAAATTGCCTTTAGTGACTGACATGGTGATGGAAGAGGGCCAATCATCTGAGTCTATAATTACAACTAATAATCCTGATCAAGATGATTCATCAAATGCATCTTTGAAGTTAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGG...................................................................................................................................................................................................................................................................................................GCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGTATGTATGTGGACAACTTGACAAAGGGCATAATGCAGATTGATTAACCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U320377" ref_strand="+" ref_description="SGN-U320377        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>gttgatccttttagcttgagttaatttagtatcttgttgatattgctttctttttatcgttctataagtcaatggtttatggaaacaattttttttttatttttgaagataaagataaggttcgtgtgcacttttatctttcttaaacatgacttgtgaaattataaatatatttattagtgtttgttaccatcaacctaatttaacttgttatataacatgtttattgatcttatattctatgttacaagttttactaattactataatcttttgtctatgttgtaacagtggtactactgcagttgaagatgattgctcaattacatctttaaagttagggctaccattcagctaacaaactcaaaggaggaagcttttgttgaagattgtactaataataatttttggatgataacaatcagtggcatatatatatatatttgccttcttttggaaaaaatattacattggaatataattgtcactgcttaattctactatgtattatatgtatgtatgtggacaacttgacaaagggcataatgcagattgattaaccatctcaaaaaagggggggcccggtacccaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="78715" stop="80173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79015" g_stop="79356" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79357" i_stop="79647" i_length="291">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="79648" g_stop="79872" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="567" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U320377" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U320377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79015" e_stop="79356"/>
          <exon e_start="79648" e_stop="79872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGTTCCTTTTAGCTTGAGTTAATTTAGTATCTTGTTGATATTGCTTTCTTTTTATCGTTCTATAAGTCAATGGTTTATCGAAACAAATTTTTTTTTATTTTTGAAGATAAAGATAAGGTTCGTATGCACTTTTATCTTTCTTAAACATGACTTGTGAAATTATAAATATATTTATTAGTGTTTGTTACCATCAACCTAATTTAACTTGTTATATAACATGTTTATTGATCTTATATTCTATGTTACAAGTTTTACTAATTACTATAATCTTTTGTCTATGTTGTAACAGTGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGGGTAAGATTTGTTTATATTTTTCATAGAATCATGTATGTATGTATATATATATACACCCCTGCTTCGTTCGTCTCAATTTATACAATGTAGTTTGACTTAATTCTTACAAAGTTTAAATTTTTTTTTGAAACTTGTAGTATAAAATAAATCATATATATATATATATATATATATATATATATATATATTTGTGTGTCTGTGGATCGCTTCATTAGGATAAAATAAACATTTTAAAGTTAAATTGTTATTATATTTATTGGAAATTAATTAAATTTGCTATTTATTGATCAGGCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGTATGTATGTGGACAACTTGACAAAGGGCATAATGCAGATTGATTAACCATCTC</genome_strand>
        <mrna_strand>GTTGATCCTTTTAGCTTGAGTTAATTTAGTATCTTGTTGATATTGCTTTCTTTTTATCGTTCTATAAGTCAATGGTTTATGGAAACAATTTTTTTTTTATTTTTGAAGATAAAGATAAGGTTCGTGTGCACTTTTATCTTTCTTAAACATGACTTGTGAAATTATAAATATATTTATTAGTGTTTGTTACCATCAACCTAATTTAACTTGTTATATAACATGTTTATTGATCTTATATTCTATGTTACAAGTTTTACTAATTACTATAATCTTTTGTCTATGTTGTAACAGTGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGG...................................................................................................................................................................................................................................................................................................GCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGTATGTATGTGGACAACTTGACAAAGGGCATAATGCAGATTGATTAACCATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321322" ref_strand="+" ref_description="SGN-U321322        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein, contains Pfam profile PF00924: Mechanosensitive ion channel | chr1:21551852-21556750 REVERSE | Aliases: F16M22.2, F16M22_2(evalue: 0, score=652) genbank/nr: gi|12321837|gb|AAG50956.1| unknown protein [Arabidopsis thaliana] (evalue: 0, score=654)">
      <seq>ttttttcaagtgaagttgcttcactaatatcatcgattgtattggttttcaggttcagaagatataaaggttcttaccatatgcaatttaacattgtgacttttgggtgtcatttctttaagcatattagaaaatggcagtttctgtgtcactgctgctgccccgtgaattgggtattcacggaaaatgtggactaagcggtcagtctaagggcacggtgagcaggagtcagacagattcttgcagcatatttctgtcatcacattctatgcggcaggatccttggagcatctaccttctgaatactgtacacaggcctttgttttcccatccttcaccaactagatgtaatgtattactatgccgctccttgctaaagccaggtggaggatatgagagtcaagttctggaaacagcaacactgatttggaaaaggtcattaagtactatacatggaagcccacttgtgcttcagctgattccggccattggtgttcttgtttttgctgcatggggtctcactccactgatgcgctttggaagaaagcttttccttcatgaaagtgatagcaattggaaacagagtagctggcattatgttacagcttcctatcttaaacctgtacttttatggactggagcaatacttatatgcagagcaatagatccactggttctacctacagttcctagccaggcagtcaagcaaagatttcttaattttatacgatcattatcgacagtgatggcacttgcctactgtttatctagcttgattcagcaaacacaaaaattcctcgtggagacaaaagaccctgctgatgcaagaaatatggggttcgaatttgcaggaaaagctatatatactgcagtatgggttgctgccgtttcattgttcatggaattgcttggtttttctacacagaagtggctgacagctgggggtcttgggacagtattgctcactcttgctggtcgtgagatacttacaaacttcctctcgagcataatgatccatgcaacaaggccctttgttctaaatgactggatacagactaagatacagggatatgatgtctctggcacagtggagcacgtaggttggtggtcacctacagtcataagaggtgatgatcgtgaagcaattcatataccaaatcacaaattttcagtgaatatcgtcaggaatcttactcagaggactcactggcggatcaagactcaccttgccatcagccacttggatgtgaataagatcaacaacattgttgcggatatgcggaaggttttgtcaaaacatcctatggtggaacagcaacgattacatagacgagtttttctggataacgttgatccagagaatcaggctcttaagatactgatttcttgctttgtgaagactcctcgttttgaagagtacctccgagtgaaggaagttatattgctggatctacttcgagtaattagccatcatcgtgctcgacttgctacacctattcgtactgtgcagaaaacatctcgcgagattgatgcagatgatgtaccatttgctgattccattttttctcgtaaccggcctaaccgccaagtcctcctcatcgagccttcttataagatcagtagtgatgataaagccaaagcttctgctcgttcagtacaatctgatgaagaaaaagaccaaaaggttgaagcaacaattacatcacggaccgctgatgacacaaatggcaagccatcaactctcgttgaaaaggaagtcgataaggcttcatcagcatcaaatgctaatggtgatgtaaaagcagcaacttcaccatcagatggaaaatcactaaaacaaggatctaccagtccagttaaaagcaactctgagaaaaaccaagttgctggagaccccccgggattgacatcagataccaacattgagaagacagatgcagcgtcttctgcttcacaggcacaacaagataccgaaagaccaatttcttctccaccttcttcagttggaaggcccatgttagaagacaacattgttcttggtgttgcactggaagggtcaaaactaacacttccaattgaggaggacgaaacgactccaccttctccctcggaatcaaaagagttagctgcctgccggaatggtaatagctcaaccaactcaaacaaagataagacggacgataagatgccaggagctccaagcacacaaagtacatcaaatgaacaaaaagaacgcgaaaggtgattatttgaaggttgagcaatgtgcaataatgcgctaaggctatttttttagagcttgcattgtgcacactgtaaatgtttttctcatgaaatttattttattatatataattgtggagcattagttggcttgtatttagcatttggtaatgatcaatgaagacacaataataccactaacttttagcttaaggcttggtctaaccatccaccatctttagcttgcaattcaattgtactgttctaccataaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="93733" stop="85241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93433" g_stop="93382" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="93381" i_stop="92656" i_length="726">
            <donor d_prob="0.789" d_score="1.00"/>
            <acceptor a_prob="0.872" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="92655" g_stop="92497" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="211" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="92496" i_stop="92375" i_length="122">
            <donor d_prob="0.943" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="92374" g_stop="92315" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="271" r_length="60" r_score="0.950"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="92314" i_stop="91282" i_length="1033">
            <donor d_prob="0.593" d_score="0.98"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="91281" g_stop="91118" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="435" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="91117" i_stop="90746" i_length="372">
            <donor d_prob="0.952" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="90745" g_stop="90622" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="559" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="90621" i_stop="90521" i_length="101">
            <donor d_prob="0.904" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="90520" g_stop="90423" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="657" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="90422" i_stop="90332" i_length="91">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.918" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="90331" g_stop="90218" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="771" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="90217" i_stop="90033" i_length="185">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="90032" g_stop="89972" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="772" r_stop="832" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="89971" i_stop="89481" i_length="491">
            <donor d_prob="0.948" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="89480" g_stop="89331" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="833" r_stop="982" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="89330" i_stop="89136" i_length="195">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.836" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="89135" g_stop="89025" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="983" r_stop="1093" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="89024" i_stop="88549" i_length="476">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="88548" g_stop="88381" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1094" r_stop="1261" r_length="168" r_score="0.994"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="88380" i_stop="88280" i_length="101">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="88279" g_stop="88166" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1262" r_stop="1375" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="88165" i_stop="87285" i_length="881">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="87284" g_stop="87228" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1376" r_stop="1432" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="13">
          <gDNA_intron_boundary i_start="87227" i_stop="86605" i_length="623">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="14">
          <gDNA_exon_boundary g_start="86604" g_stop="85541" g_length="1064"/>
          <reference_exon_boundary r_type="cDNA" r_start="1433" r_stop="2496" r_length="1064" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2497" polyA_stop="2509"/>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U321322" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>2496</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93433" e_stop="93382"/>
          <exon e_start="92655" e_stop="92497"/>
          <exon e_start="92374" e_stop="92315"/>
          <exon e_start="91281" e_stop="91118"/>
          <exon e_start="90745" e_stop="90622"/>
          <exon e_start="90520" e_stop="90423"/>
          <exon e_start="90331" e_stop="90218"/>
          <exon e_start="90032" e_stop="89972"/>
          <exon e_start="89480" e_stop="89331"/>
          <exon e_start="89135" e_stop="89025"/>
          <exon e_start="88548" e_stop="88381"/>
          <exon e_start="88279" e_stop="88166"/>
          <exon e_start="87284" e_stop="87228"/>
          <exon e_start="86604" e_stop="85541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCAAGTGAAGTTGCTTCACTAATATCATCGATTGTATTGGTTTTCAGGTTCGTAATTACCTTGATTCGAGGATTAATGGTTCGTTTTTGTTGTTGTTGATGTGAAATTTAATTTTTATTTTTTGATGTTTGATGGTTGAGTGTTTTTTTTTTTTTGTTTGAAGATTTGGGAGTTTGATTAGGTAAGTGAAGAAGGAAAGGAGAAGATCTTTGTGAGTGTGTGGTGTAGTAGCAATGCTGTAATTTTAACTGTTCATTGTGTTAAGATTTTTTCTCGTCATGTTTTATGCATTAACTTGTAATTGTGCTTGATGTGGCGTAGCGTGGCTTAGTGATAGGATATATGAAATTTGTTGGAGTGAAGTCTTCAATAACATATACAGTGTAATCTCACAAAGTAGGCTGTTGGGAGGATAGGAGGTAGATAAATTGTTTCGATAGACATCAGTTCGAAGTCTTACTTTAGATACTTCTGTGATCAAAAATCTTGTGTAATCGATTGATCAGAGTGCTAGGTGGGAGAGGACTATCACTGCACTTGTTAATCTGTTGTGACAATGAGTGAAGAGTTAGTGTGTATAATGTCAAAAAGAATTTCAGCTATATTTAAGGTGGTGAGTGTGCCAGAGGAAGACACTGTTGCAAATCTATTACTGTGTTGGATAACTGGGACCTAATAAATCAGTTAAAGGAGGAGGCTTTCTTTATGCTTACTGTTAGGCAGGTTGCTTCTTGCTTAATTTGATGTTGATGCTGCACATTTTGTTTTTGTAGGTTCAGAAGATATAAAGGTTCTTACCATATGCAATTTAACATTGTGACTTTTGGGTGTCATTTCTTTAAGCATATTAGAAAATGGCAGTTTCTGTGTCACTGCTGCTGCCCCGTGAATTGGGTATTCACGGAAAATGTGGACTAAGCGGTCAGTCTAAGGTACAATAGGATTCTTGCGTTTGATTTTAGTTTTTAATGTATCAATAGAGTCAATGAAGTCGTCAATTGTTTATTGATAAAATAAGGACGCCCTCAGTTCTTACTTTTTTGTTTTTTCTTAGGGCAAGATGAGCAGGAGTCAGACAGATTCTTGCAGCATATTTCTGTCGTCACATTCTATGGTATGATTTGGGCTGAATTATAATCACCACAAGTCCCTTTAATTTTCACCCCTCCTCATTTTCTTTGCTAGCTTTTTTGATGATTCACTTTGTTGTCATTATGTTATTAAATAAACGTGGTTCAACAATTCGCTACCTCCACGAAGTAATGGTGAGGTCTGTGTACACATTCTACCCTCCCCAGACCTCATCGTGGGATTTCACGGGGTATGTTGTTGTATATCATGGACTTATCAATTATTTCAACTTTTTGTTGATCTTATTCTTTAAGAAGTTGATTCCTTTACTTCATTGCATTGCCTAAGCATCATGAAATTGACTCAAGAAAACTAAGCTTTATGTACTTGACGTGATCTTGAATAGTTCCATTAATAGGTTGAGTTTAGCAGACACACTAAAATTAACTTAAATATGCGCATCTTGGGTTGCTTATCTAAATATTGAGGGAGTCTTGAGCTCAAATTCATGTTTGTTAACTAGATGAATTTACTTATTTTGGCTTGTGATCTGATCGTAAAGCTTGATAATGTGGAAAGTTTTAGGAAATCCCTAAGAATGTGATGTGCCTTTATTGTCACGCAAGTGTATTTGCATTTGTAAAGTTCGATTTGATAAGTGTAGTTGCAGATAAATAAACTGAGATTGGTTCTAGCTTGAATTGTGGTGTATCGAGCTAATTCGAGTTAGAACTTGAGTTTTTTTGAATTCAGTATGCTCAAGCTGATATTGTTATAACAATTGAGCAAGCTTATTAAATAATCAACTCAAGTCATCTTGTTTATACCTCTACTTATTAGAATAATAATAATAATGATAACAATAATAATAATAATAATAATAATAATAATAATAATAATATTTATATATTTTTATAGTATTCTTGGAAGTTTTGAAAGTTGAATGAAGTAACGGAGCATTTGCTGCAATTATTCTACAAAACTCTCTTAAACTATATTATAATTCGTGGTTGTAGATTGATTCATAATTTTTACTGTCTCATTGACACTTGATATGTGGTGTACTGCATCTTCAGCGGCAGGATCCTTGGAGCATCTACCTTCTGAATACTGTACACAGGCCTTTGTTTTCCCATCCTTCACCAACTAGATGTAATGTATTACTATGCCGCTCCTTGCTAAAGCCAGGTGGAGGATATGAGAGTCAAGTTCTGGAAACAGCAACACTGATTTGGAAAAGGTAGATGGTTCTACATTTATTATCTTTTATCAAGTTGCATGGACATTTAGATCTCGGAGTTCTTAATAATTGATTCTTGTCATCCAATAATGCAACTCCTATCACCAATGAAGTTTCTAGTAATTGATTAGAATCTCCTTCTCAATGAGCATAAGTTCTTTTTTTTTCACAAATCACAACCCATTCTTCAGCCTTATAATTTATCTTGATCTTGATTTTCTGTCAAATTAAACGTCTGACGATTTCTTTACTTGAAAGTGGAATAATCACTCCTGATTAAAGCAACCCCACCTTCTCTATTTATCCCCCATCCATGACCCAATATTAATTTGATCAAAGTGGTACCTATTGAATTATTAATTTATTTTGCAGGTCATTAAGTACTATACATGGAAGCCCACTTGTGCTTCAGCTGATTCCGGCCATTGGTGTTCTTGTTTTTGCTGCATGGGGTCTCACTCCACTGATGCGCTTTGGAAGAAAGCTTTTCCTTCATGTACTGGCTTCTCTAGACAATCTTTCTTGCTGGCTTGCTGCAAGTTGTATACATCATTATCTCTTCCCAAATTAAAGCTTTGTCTGAAAATATTCTTGCAGGAAAGTGATAGCAATTGGAAACAGAGTAGCTGGCATTATGTTACAGCTTCCTATCTTAAACCTGTGCTTTTATGGACTGGAGCAATACTTATATGCAGGTTAAATGGCAGTGCAATTTAAACAAAGTTGAAATAAAGTTAGATATATGCTTTATAAAGCGCTCATGCTGCTGGTATTGAACGTTTGCAGAGCAATAGATCCACTGGTTCTACCTACAGTTTCTAGCCAGGCAGTCAAGCAAAGATTTCTTAATTTTATACGATCATTATCGACAGTGATGGCACTTGCCTACTGTTTATCTAGGTGATATGTTTGCTTTCAAAATTTGATTTTTGGATGCAATAGTGACAATTTTATTTATTCTTGCTCTTGGCCATAACATGACAGCTTATCATCATACTCTTGTTTTTTCTTATTAACTTAATGATGTAATGCTGATTAGTTTCTCTCTTTTTATGCGAAGCTGATCTTTATTATCCTTTTGGCAGCTTGATTCAGCAAACACAAAAATTCCTCGTGGAGACAAAAGACCCTGCTGATGCAAGAAATGTATGTCTGGGAATTATACGTTTACTACAATTTGTTGAAGCTTGGAGATTTTAAAACCTTTTGATAAATGCACAAATGTTTATGATGAAACTCCATATAGATATTTAAACATCACCTAGAGCTAATGCTAAATACGGCAACTAAATAACTGGAAACAGTTTACGTATCTGTCGAAAGCTTGTCGGTGGCTGTTAGTTGGTTCCCCTTTCTGCAAGACCATGTTCTTTTTCCGAAGAAATTCCTTTCTTGGCTAACTGATTAGGATCTAACTCCAGAACGGAGGCTTATTTTAGTTTGGCAGCTGCATACACTACTCTGTAATATTTTTTTACACCTTTCCTGTCCATATTTATGTAATCTAAACTATCACAACAATTAAACTCTTAAGGATTAAAGTTGCCTCAAAAGAAACATATGCAGCAAAATGTCGCTCATTGTTGCCTTCTTTGATCAAAGTCTTATTCTTCAAATATGTGTCTCGCTCTTTGCAGATGGGGTTCGAATTTGCAGGGAAAGCTATATATACTGCAGTATGGGTTGCTGCCGTTTCATTGTTCATGGAATTGCTTGGTTTTTCTACACAGAAGTGGCTGACAGCTGGGGGTCTTGGGACAGTATTGCTCACTCTTGCTGGTCGTGAGGTAATCTGAGCATTTATTTTGAATTCCTAGGTGCTGCTAAATCAGCTCTTATACTTTTCTCCATCTTATTTAGAACATTCTCACTATTGGTTGGTTGGACATCACTTTTTATTCACATTTCTTTTCTGGATAGAAATCTTGTTGCCACTTGCACTAGACCAACTTATTTTTTATAAACACTCTATTGCTTGTCAGATACTTACAAACTTCCTCTCGAGCATAATGATCCATGCAACAAGGCCCTTTGTTCTAAATGACTGGATACAGACTAAGATACAGGGATATGATGTCTCTGGCACAGTGGAGGTAACTATTTGGTCCTGCCACCAATTACTCCCCGTCCCTAATTACTTGTCCACTTTTAAATTGACACGTTTATTAAGAAAACAATAATTGACATAGTGAGTTTACCATTTTACCCCTATTAATTATAAAGTGGATAATTTGAATTTTCAAGAAGTTCTACCTTTTTCAAACTAATTAATTGAGGGTATAATAGGTAAAAACAATTTGTCCTTTCTTGACTTGTGAAAATGGACAAGTAATTAGGAACAACTATAAAAGGAAAAGTGGAGAAGTAATTAGGAACAGAGGGAGTAGATGATAAGAAACATAATAAACAATTACAATAACAAGAAGTATTGCATGCTTGATATGCAAGGATTTGCAATAAATAGCTGTGGTAGGGTAATAACTAACAAAATCTATTTGTGCTGAATAAGTTGAATAGAAAGCTAAATCATCGGATTGAACTGTTGCATGACTGCTTTCTTGTTGTTTAGCACGTAGGTTGGTGGTCACCTACAGTCATAAGAGGTGATGATCGTGAAGCAATTCATATACCAAATCACAAATTTTCAGTGAATATCGTCAGGAATCTTACTCAGAGGACTCACTGGCGGATCAAGACTCATCTTGCCATCAGCCACTTGGATGTGAATAAGATCAACGTTAGTGAATCAAATTTTCTAGTTAGATAAGATCCAATCCTCCTGTTTTTAATTAATAGTTCTGTTGGCTGATGCGAATTTCACGACTCCTTCATGTATAGAACATTGTTGCGGATATGCGGAAGGTTTTGTCAAAACATCCTATGGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATAACGTTGATCCAGAGAATCAGGCTCTTAAGGTGGGTGGTACCTCTTTCGCTATCTTATTCATTGCCTGAAATACAGTGGTAAACTGCATTGACAGCTATTCTGTAAGGCAACTAGTTATGGTCTTGATATTGTCTTCACGAGTTATAGGCTTGAACAATAATGGCATCTCAGTTGGCCGAATCATCTATTTAGCGCCGTGTTAGATTTATTAAGATTCTATAGAAACATAAACATGTAGGATTAGTCATGAGTGTTTATCTATATGATTTCTTTCCTTGATTGTTTATTTTAGCCTGTTTTGCCTACTTTGCTTCACTTGAGCCGAGGGTTTATCAAAAACAATTGTTCTACCTTCACAAGGTAGGGGTAAGGCTGCGTACACACCACCCTTCCCAGACCCCACTTGTGGGATTCAGCAGTACTGTTTGTTGTTTTGCCCACTTTCTTCACTTCGTTCCCTCTGGCAAAATGTTAAGAAGGCTAACTGCGTCTTATCCCCCTGCTTGATTTCTTTCATCCCTATTTGAGCTGTTCTTTCCTATTTGAAGAAATGTGTGGGACCGGTGGAGACTGATAAGGGGTGAAAGATCTCTCTCAATTATGCTTTTTGAAAATGTATTATCACCCTGAATAAGTAAATCCTCGTTATCCAGGGTGAAGATGCACATAAAGAGTAAGATAGAAGCCGTCGAAGTGCAGAGCCCAGTGCAAGTAGTGGGAACTTCTAGCCGCATCTAAGCTAGATCACTTTATTTATTGTGCAAGTGTGTCAACCTGTCTTCCGTACTAATTGTACATGTTATCTAATCTTGGCAATCTTTTGTTTTACATATTGTGCATTAAAAGTCTAAGGTATTGATTCCTTTTTAATAGTATGACTCATCTTTTGTAATCATTGCATGTGAAACAGATACTGATTTCTTGCTTTGTGAAGACTCCTCGTTTTGAAGAGTACCTCCGAGTGAAGGTACAAGTTTTATCCTTTCTTTCAATTAAGTAGTCCTAAGTCTAACTTTGTAAATCCATCTTTGATTACAGTACTGCTAGTTAACCAACCGCCACAACTTAATCAATTTATACTTGGTCATGTATAAGCTCTTTCACTTGGTGCCCTGATTGTAGATGATGCACATTCTATATGCTTTATGCATTCACTGTCCCGTCTGTCCTCTGTACGTCTGTTCCTCCTGCTCGTCTTACCTTTGCCAGAACTGTCTTCATGTAAACTACGGTTGGACTAGTTTGTTATATTGTGATGCCAAAGCCAACTCTCACAAGGAGTAATAAATGAAGCTTACATGAACTATGAAAAATGTGAAATTGATATTTTGATACCAACATTCAGAAGTAATACAAAATGTTGATAAGCATCTTTAGTATCTGCAGTTATTTGGTTCAAACTATAGTGCAGTATCTTCCAACTGTAACTCCAAATTGCAGGTACACGTAGATCCAATATGCTTCTAGCTTGAGGCCATTTTATTGATCTGCATCTGTGGTGTGTGTTTGTGTCACTCGAGGTACTTAGGTGTATTAGGAAAATCGTAACTTCCTGCTAACGATTCTCTCTGTCCAACTTTTGGTTTTCAGGAAGTTATATTGCTGGATCTACTTCGAGTAATTAGCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGCGAGATTGATGCAGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCCAAGTCCTCCTCATCGAGCCTTCTTATAAGATCAGTAGTGATGATAAAGCCAAAGCTTCTGCTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCAACAATTACATCACGGACCGCTGATGACACAAATGGCAAGCCATCAACTCTCGTTGAAAAGGAAGTCGATAAGGCCTCATCAGCATCAAATGCGAATGGTGATTTAAAAGCAGCAACTTCACCATCAGATGGAAAATCACTAAAACAAGGATCTACCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAGTTGCTGGAGACCCCCCGGGGTTGACATCAGATACCAACATTGAGAAGACAGATGCAGCGTCTTCTGCTTCACAGGCACAACAAGATACCGAAAGATCAATTTCTTCTCCACCTTCTTCAGTTGGAAGGCCCATGTTAGAAGACAACATTGTTCTTGGTGTTGCACTGGAAGGGTCAAAACTAACACTTCCAATTGAGGAGGACGAAACGACTCCACCTTCTCCCTCGGAATCAAAAGAGTTAGCTGCCTGCCGGAATGGTAATAGCTCAACCAACTCAAACAAAGATAAGACGGACGATAAGATGCCAGGAGCTCCAAGCACACAAAGTACATCAAATGAACAAAAAGAACGCGAAAGGTGATTATTTGAAGGTTGAGCAATGTGCAATAATGCGCTAAGGCTATTTTTTTAGAGCTTGCATTGTGCACACTGTAAATGTTTTTCTCATGAAATTTATTTTATTATATATAATTGTGGAGCATTAGTTGGCTTGTATTTAGCATTTGGTAATGATCAATGTAGACACAATAATACCACTAACTTTTAGCTTAAGGCTTGGTCTAACCATCCACCATCTTTAGCTTGCAATTCAATTGTACTGTTCTACCATAA</genome_strand>
        <mrna_strand>TTTTTTCAAGTGAAGTTGCTTCACTAATATCATCGATTGTATTGGTTTTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGAAGATATAAAGGTTCTTACCATATGCAATTTAACATTGTGACTTTTGGGTGTCATTTCTTTAAGCATATTAGAAAATGGCAGTTTCTGTGTCACTGCTGCTGCCCCGTGAATTGGGTATTCACGGAAAATGTGGACTAAGCGGTCAGTCTAAG..........................................................................................................................GGCACGGTGAGCAGGAGTCAGACAGATTCTTGCAGCATATTTCTGTCATCACATTCTATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGGATCCTTGGAGCATCTACCTTCTGAATACTGTACACAGGCCTTTGTTTTCCCATCCTTCACCAACTAGATGTAATGTATTACTATGCCGCTCCTTGCTAAAGCCAGGTGGAGGATATGAGAGTCAAGTTCTGGAAACAGCAACACTGATTTGGAAAAG....................................................................................................................................................................................................................................................................................................................................................................................GTCATTAAGTACTATACATGGAAGCCCACTTGTGCTTCAGCTGATTCCGGCCATTGGTGTTCTTGTTTTTGCTGCATGGGGTCTCACTCCACTGATGCGCTTTGGAAGAAAGCTTTTCCTTCAT.....................................................................................................GAAAGTGATAGCAATTGGAAACAGAGTAGCTGGCATTATGTTACAGCTTCCTATCTTAAACCTGTACTTTTATGGACTGGAGCAATACTTATATGCAG...........................................................................................AGCAATAGATCCACTGGTTCTACCTACAGTTCCTAGCCAGGCAGTCAAGCAAAGATTTCTTAATTTTATACGATCATTATCGACAGTGATGGCACTTGCCTACTGTTTATCTAG.........................................................................................................................................................................................CTTGATTCAGCAAACACAAAAATTCCTCGTGGAGACAAAAGACCCTGCTGATGCAAGAAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGTTCGAATTTGCAGGAAAAGCTATATATACTGCAGTATGGGTTGCTGCCGTTTCATTGTTCATGGAATTGCTTGGTTTTTCTACACAGAAGTGGCTGACAGCTGGGGGTCTTGGGACAGTATTGCTCACTCTTGCTGGTCGTGAG...................................................................................................................................................................................................ATACTTACAAACTTCCTCTCGAGCATAATGATCCATGCAACAAGGCCCTTTGTTCTAAATGACTGGATACAGACTAAGATACAGGGATATGATGTCTCTGGCACAGTGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTAGGTTGGTGGTCACCTACAGTCATAAGAGGTGATGATCGTGAAGCAATTCATATACCAAATCACAAATTTTCAGTGAATATCGTCAGGAATCTTACTCAGAGGACTCACTGGCGGATCAAGACTCACCTTGCCATCAGCCACTTGGATGTGAATAAGATCAAC.....................................................................................................AACATTGTTGCGGATATGCGGAAGGTTTTGTCAAAACATCCTATGGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATAACGTTGATCCAGAGAATCAGGCTCTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGATTTCTTGCTTTGTGAAGACTCCTCGTTTTGAAGAGTACCTCCGAGTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTATATTGCTGGATCTACTTCGAGTAATTAGCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGCGAGATTGATGCAGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCCAAGTCCTCCTCATCGAGCCTTCTTATAAGATCAGTAGTGATGATAAAGCCAAAGCTTCTGCTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCAACAATTACATCACGGACCGCTGATGACACAAATGGCAAGCCATCAACTCTCGTTGAAAAGGAAGTCGATAAGGCTTCATCAGCATCAAATGCTAATGGTGATGTAAAAGCAGCAACTTCACCATCAGATGGAAAATCACTAAAACAAGGATCTACCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAGTTGCTGGAGACCCCCCGGGATTGACATCAGATACCAACATTGAGAAGACAGATGCAGCGTCTTCTGCTTCACAGGCACAACAAGATACCGAAAGACCAATTTCTTCTCCACCTTCTTCAGTTGGAAGGCCCATGTTAGAAGACAACATTGTTCTTGGTGTTGCACTGGAAGGGTCAAAACTAACACTTCCAATTGAGGAGGACGAAACGACTCCACCTTCTCCCTCGGAATCAAAAGAGTTAGCTGCCTGCCGGAATGGTAATAGCTCAACCAACTCAAACAAAGATAAGACGGACGATAAGATGCCAGGAGCTCCAAGCACACAAAGTACATCAAATGAACAAAAAGAACGCGAAAGGTGATTATTTGAAGGTTGAGCAATGTGCAATAATGCGCTAAGGCTATTTTTTTAGAGCTTGCATTGTGCACACTGTAAATGTTTTTCTCATGAAATTTATTTTATTATATATAATTGTGGAGCATTAGTTGGCTTGTATTTAGCATTTGGTAATGATCAATGAAGACACAATAATACCACTAACTTTTAGCTTAAGGCTTGGTCTAACCATCCACCATCTTTAGCTTGCAATTCAATTGTACTGTTCTACCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321323" ref_strand="+" ref_description="SGN-U321323        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein, contains Pfam profile PF00924: Mechanosensitive ion channel | chr1:21551852-21556750 REVERSE | Aliases: F16M22.2, F16M22_2(evalue: 1e-34, score=143) genbank/nr: gi|12321837|gb|AAG50956.1| unknown protein [Arabidopsis thaliana] (evalue: 1e-32, score=143)">
      <seq>tcagaggactcactggcggatcaagactcaccttgccatcagccacttggatgtgaataagatcaacaacattgttgcggatatgcggaaggttttgtcaaaacatcctatggtggaacagcaacgattacatagacgagtttttctggataacgttgatccagagaatcaggctcttaagatactgatttcttgctttgtgaagactcctcgttttgaagagtacctccgagtgaagtactgcttgttaaccaaccgccacaacttaatcaatttatacttggtcatgtataagctctttcacttggtgccctgattgtagatgatgcacattctatatgctttatgcattcactgtcccgtctgtcctctgaagttatattgctggatctacttcgagtaattagccatcatcgtgctcgacttgctacacctattcgtactgtgcagaaaacatctcgcgagattgatgcagatgatgtaccatttgctgattccattttttctcgtaaccggcctaaccgccaagtcctcctcatcgagccttcttataagatcagtagtgatgataaagccaaagcttctgctcgttcagtacaatctgatgaagaaaaagaccaaaaggttgaagcaacaattacatcacggaccgctgatgacacaaatggcaagccatcaactctcgttgaaaaggaagtcgataaggcttcatcagcatcaaatgctaatggtgatgtaaaagcagcaacttcaccatcagatggaaaatcactaaaacaaggatctaccagtccagttaaaagcaactctgagaaaaaccaagttgctggagaccccccgggattgacatcagatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="88747" stop="85820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88447" g_stop="88381" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="88380" i_stop="88280" i_length="101">
            <donor d_prob="0.888" d_score="0.98"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88279" g_stop="88166" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="181" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="88165" i_stop="87285" i_length="881">
            <donor d_prob="0.773" d_score="1.00"/>
            <acceptor a_prob="0.933" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="87284" g_stop="87228" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="238" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="87227" i_stop="87157" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.587" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="87156" g_stop="87023" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="372" r_length="134" r_score="0.993"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="87022" i_stop="86605" i_length="418">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="86604" g_stop="86120" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="857" r_length="485" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U321323" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U321323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88447" e_stop="88381"/>
          <exon e_start="88279" e_stop="88166"/>
          <exon e_start="87284" e_stop="87228"/>
          <exon e_start="87156" e_stop="87023"/>
          <exon e_start="86604" e_stop="86120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGGACTCACTGGCGGATCAAGACTCATCTTGCCATCAGCCACTTGGATGTGAATAAGATCAACGTTAGTGAATCAAATTTTCTAGTTAGATAAGATCCAATCCTCCTGTTTTTAATTAATAGTTCTGTTGGCTGATGCGAATTTCACGACTCCTTCATGTATAGAACATTGTTGCGGATATGCGGAAGGTTTTGTCAAAACATCCTATGGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATAACGTTGATCCAGAGAATCAGGCTCTTAAGGTGGGTGGTACCTCTTTCGCTATCTTATTCATTGCCTGAAATACAGTGGTAAACTGCATTGACAGCTATTCTGTAAGGCAACTAGTTATGGTCTTGATATTGTCTTCACGAGTTATAGGCTTGAACAATAATGGCATCTCAGTTGGCCGAATCATCTATTTAGCGCCGTGTTAGATTTATTAAGATTCTATAGAAACATAAACATGTAGGATTAGTCATGAGTGTTTATCTATATGATTTCTTTCCTTGATTGTTTATTTTAGCCTGTTTTGCCTACTTTGCTTCACTTGAGCCGAGGGTTTATCAAAAACAATTGTTCTACCTTCACAAGGTAGGGGTAAGGCTGCGTACACACCACCCTTCCCAGACCCCACTTGTGGGATTCAGCAGTACTGTTTGTTGTTTTGCCCACTTTCTTCACTTCGTTCCCTCTGGCAAAATGTTAAGAAGGCTAACTGCGTCTTATCCCCCTGCTTGATTTCTTTCATCCCTATTTGAGCTGTTCTTTCCTATTTGAAGAAATGTGTGGGACCGGTGGAGACTGATAAGGGGTGAAAGATCTCTCTCAATTATGCTTTTTGAAAATGTATTATCACCCTGAATAAGTAAATCCTCGTTATCCAGGGTGAAGATGCACATAAAGAGTAAGATAGAAGCCGTCGAAGTGCAGAGCCCAGTGCAAGTAGTGGGAACTTCTAGCCGCATCTAAGCTAGATCACTTTATTTATTGTGCAAGTGTGTCAACCTGTCTTCCGTACTAATTGTACATGTTATCTAATCTTGGCAATCTTTTGTTTTACATATTGTGCATTAAAAGTCTAAGGTATTGATTCCTTTTTAATAGTATGACTCATCTTTTGTAATCATTGCATGTGAAACAGATACTGATTTCTTGCTTTGTGAAGACTCCTCGTTTTGAAGAGTACCTCCGAGTGAAGGTACAAGTTTTATCCTTTCTTTCAATTAAGTAGTCCTAAGTCTAACTTTGTAAATCCATCTTTGATTACAGTACTGCTAGTTAACCAACCGCCACAACTTAATCAATTTATACTTGGTCATGTATAAGCTCTTTCACTTGGTGCCCTGATTGTAGATGATGCACATTCTATATGCTTTATGCATTCACTGTCCCGTCTGTCCTCTGTACGTCTGTTCCTCCTGCTCGTCTTACCTTTGCCAGAACTGTCTTCATGTAAACTACGGTTGGACTAGTTTGTTATATTGTGATGCCAAAGCCAACTCTCACAAGGAGTAATAAATGAAGCTTACATGAACTATGAAAAATGTGAAATTGATATTTTGATACCAACATTCAGAAGTAATACAAAATGTTGATAAGCATCTTTAGTATCTGCAGTTATTTGGTTCAAACTATAGTGCAGTATCTTCCAACTGTAACTCCAAATTGCAGGTACACGTAGATCCAATATGCTTCTAGCTTGAGGCCATTTTATTGATCTGCATCTGTGGTGTGTGTTTGTGTCACTCGAGGTACTTAGGTGTATTAGGAAAATCGTAACTTCCTGCTAACGATTCTCTCTGTCCAACTTTTGGTTTTCAGGAAGTTATATTGCTGGATCTACTTCGAGTAATTAGCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGCGAGATTGATGCAGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCCAAGTCCTCCTCATCGAGCCTTCTTATAAGATCAGTAGTGATGATAAAGCCAAAGCTTCTGCTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCAACAATTACATCACGGACCGCTGATGACACAAATGGCAAGCCATCAACTCTCGTTGAAAAGGAAGTCGATAAGGCCTCATCAGCATCAAATGCGAATGGTGATTTAAAAGCAGCAACTTCACCATCAGATGGAAAATCACTAAAACAAGGATCTACCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAGTTGCTGGAGACCCCCCGGGGTTGACATCAGATAC</genome_strand>
        <mrna_strand>TCAGAGGACTCACTGGCGGATCAAGACTCACCTTGCCATCAGCCACTTGGATGTGAATAAGATCAAC.....................................................................................................AACATTGTTGCGGATATGCGGAAGGTTTTGTCAAAACATCCTATGGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATAACGTTGATCCAGAGAATCAGGCTCTTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTGATTTCTTGCTTTGTGAAGACTCCTCGTTTTGAAGAGTACCTCCGAGTGAAG.......................................................................TACTGCTTGTTAACCAACCGCCACAACTTAATCAATTTATACTTGGTCATGTATAAGCTCTTTCACTTGGTGCCCTGATTGTAGATGATGCACATTCTATATGCTTTATGCATTCACTGTCCCGTCTGTCCTCT..................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTATATTGCTGGATCTACTTCGAGTAATTAGCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGCGAGATTGATGCAGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCCAAGTCCTCCTCATCGAGCCTTCTTATAAGATCAGTAGTGATGATAAAGCCAAAGCTTCTGCTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCAACAATTACATCACGGACCGCTGATGACACAAATGGCAAGCCATCAACTCTCGTTGAAAAGGAAGTCGATAAGGCTTCATCAGCATCAAATGCTAATGGTGATGTAAAAGCAGCAACTTCACCATCAGATGGAAAATCACTAAAACAAGGATCTACCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAGTTGCTGGAGACCCCCCGGGATTGACATCAGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U345234" ref_strand="+" ref_description="SGN-U345234        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chromosome-associated kinesin, putative, microtubule-associated motor KIF4 , Mus musculus, PIR:A54803 | chr5:24532624-24539737 REVERSE | Aliases: MSL3.50, MSL3_50(evalue: 6e-44, score=174) genbank/nr: gi|26451782|dbj|BAC42985.1| putative microtubule-associated motor [Arabidopsis thaliana](evalue: 3e-42, score=175)">
      <seq>agtgatttcccccagaaaatgtctccgggtgcaagaaattccaggatatttgcgcttgaaaacatgcttgccacttcatctagcacacttgtctccatggcatcacagttatcggaagcagaagagcgtgaacgcgcctttagtggtaggggcagatggaaccaagtccgatctcttgctgatgcaaaaaatattatgaactttttattgaaccttgcatcatcttctagatgccagctaagggatagggaagttgaatgcagagagaaggatgctgaaatcagggagctgaaggaaaaactcgtaaattttgtcagacagatagagttgcaaaagagtgaattgagacagctagagtcgcaaaacagtgaactgattcagcaggagaagttgatgaaattggctttagaacaccccattgaaaggacaaacaactctggctctaatgagataagaagcagcactgacgggcatgattatgacctgaggcaaaaggggaactccgagacttatgattcagttgttgacttggcgatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="107042" stop="109328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="107342" g_stop="107571" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="107572" i_stop="107662" i_length="91">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107663" g_stop="107828" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="396" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107829" i_stop="108054" i_length="226">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="108055" g_stop="108153" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="495" r_length="99" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="108154" i_stop="108985" i_length="832">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="108986" g_stop="109029" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="539" r_length="44" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U345234" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U345234" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="107342" e_stop="107571"/>
          <exon e_start="107663" e_stop="107828"/>
          <exon e_start="108055" e_stop="108153"/>
          <exon e_start="108986" e_stop="109029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATTTCCCCCAGAAAATGTCTCCGGGTGCAAGAAATTCCAGGATATTTGCGCTTGAAAACATGCTTGCCACTTCATCTAGCACACTTGTCTCCATGGCATCACAGTTATCGGAAGCAGAAGAGCGTGAACGCGCCTTTAGTGGTAGGGGCAGATGGAACCAAGTCCGATCTCTTGCTGATGCAAAAAATATTATGAACTTTTTATTGAACCTTGCATCATCTTCTAGGTAAATGTCTTCAAAACATACAAAGTCTTTGCTTCACGCTAACTTTCCTGAAATAAATTGTAACTGTTGCTCTGGTTCTGGTTTCCTGAAGATGCCAGCTAAGGGATAGGGAAGTTGAATGCAGAGAGAAGGATGCTGAAATCAGGGAGCTGAAGGAAAAACTCGTAAATTTTGTCAGACAGATAGAGTTGCAAAAGAGTGAATTGAGACAGCTAGAGTCGCAAAACAGTGAACTGATTCAGCAGGAGAAGTTGATGGTCAGTACATCTTTTGAATAAATTCGTAGAATATTGATTGAGTACATCTTGCTAACTTGCCTTCGATAATGAAGAGAAGAAACTAAGTTATTTTTCAAATCAACACACTTTCTTCACTTCAAGTGTTGAGATTTATCAATTGTTAAATCTATTTCCAAAGCAAGACTTGGAACCAAAAATTTGATTTTCCTGCATTTAATTGTTTTATTGTTTGAATTGCTTACAGAAATTGGCTTTAGAACACCCCATTGAAAGGACAAACAACTCTGGCTCTAATGAGATAAGAAGCAGCACTGACGGGCATGATTATGACCTGAGGCAAAAGGCATGTACCTTGGACCCTTGAATAAGTTAACAATGTACTTGTGTTACGGTTTGCTAACATGTGTCTGCCCTTTCTGTAGGGGAACCGGAGTTCCTTGATCTACGGTGGTAGATTGAACAAGCTTGAGCTAGAAGAAGATATGGATATATCTGATTCAGATCATTCAGATCATTCTGACACTGATTATGGTTCTTCAGGATGTTCGTGCGGTAAAAGGTCTTCATGCCTGACAAATAAATGTTTATGCCGGTACACAAATGGCTCTTGTGGGCCATCATGTGGTTGTAACCCTAAAAAGTGCAGTAACAGAGAGAGTTCTACCAAGAACCAGTTGTCCTCATTAGATGTCGTAGGTGATGAGGGAACTGATGAAGCTGAGAGTAGTCAAACACTAGTTTTTCAAGGCGCAATGTTACTTCAAAATGCGCTTTCTGAAAAGCCCATACAGTCAAAAGATGAGGGTGAAACTAAAAGAAAGCCTCTTTCTGACATTGGAAATACCAGGGTAAGCCACCCCCTAGCATGTCTGCTGATCTATTCATATTCTTCTGCACAACAACTGATGTGTTAACTTGTAATTTTACAGGCGAAATCAAATGCACCAAAACCTAATCAACGGAAGCAATGGCGGAAATCAACTATTCAACTTGTTCCTACTACCCCAATGACTCAAGCAAGTAATGCAGAAGCCCCAACAAAAACATCTCAATCAGTCAATGCTGATGCATCAGTAAAAACAGAAAACAAGGTTGGTGAGATTGATACTCCTGCATTAAAATTACCCAGAGCGATGCGTTCTGCATCAACAAACGGAAACAACACCTTAAGAGAAAGGAACTCCGAGACTTATGATTCAGTTGTTGACTTGGCGATACA</genome_strand>
        <mrna_strand>AGTGATTTCCCCCAGAAAATGTCTCCGGGTGCAAGAAATTCCAGGATATTTGCGCTTGAAAACATGCTTGCCACTTCATCTAGCACACTTGTCTCCATGGCATCACAGTTATCGGAAGCAGAAGAGCGTGAACGCGCCTTTAGTGGTAGGGGCAGATGGAACCAAGTCCGATCTCTTGCTGATGCAAAAAATATTATGAACTTTTTATTGAACCTTGCATCATCTTCTAG...........................................................................................ATGCCAGCTAAGGGATAGGGAAGTTGAATGCAGAGAGAAGGATGCTGAAATCAGGGAGCTGAAGGAAAAACTCGTAAATTTTGTCAGACAGATAGAGTTGCAAAAGAGTGAATTGAGACAGCTAGAGTCGCAAAACAGTGAACTGATTCAGCAGGAGAAGTTGATG..................................................................................................................................................................................................................................AAATTGGCTTTAGAACACCCCATTGAAAGGACAAACAACTCTGGCTCTAATGAGATAAGAAGCAGCACTGACGGGCATGATTATGACCTGAGGCAAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAACTCCGAGACTTATGATTCAGTTGTTGACTTGGCGATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343884" ref_strand="-" ref_description="SGN-U343884        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | chromosome-associated kinesin, putative, microtubule-associated motor KIF4 , Mus musculus, PIR:A54803 | chr5:24532624-24539737 REVERSE | Aliases: MSL3.50, MSL3_50(evalue: 2e-15, score=59.3) genbank/nr: gi|10177316|dbj|BAB10642.1| kinesin-like protein [Arabidopsis thaliana](evalue: 5e-13, score=78.2)">
      <seq>tcaacggaagcaatggcggaaatcaacacttcaacttgttcctactaccccaatgactcaagcaagtaatgcagaagccccaacaaaaacatctcaatcagttaatgctgatgatgcatcagtaaaaacagaaaacaaggttggtgagattgatactcctgcattaaaattacccagagcgatgcgttctgcatcaacaaacggaaacaacaccttaagagaaaggaactccgagacttatgattcagttgttgacttggcgatacctccagctcctaagagtcctctacggaagacgaaggtaaaggaggagaaagaaaattgagaagcatgatttccatttgtttgatccaaattgtatgtatagaggtttggtcttggctgttctgccactggatttttgtatggctaatcttttctaaccttaaaaagaggtgcctcaattgatcatagatcctgaaagtattaggatactagagtctggaggctttaatctgaagagcatctctgttgtaattcttcaaaaacttttccaatatttagtgaaattgattgtttttcggtgcataaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="108466" stop="109634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108766" g_stop="109334" g_length="569"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="573" polyA_stop="593"/>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U343884" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>569</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343884" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="108766" e_stop="109334"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACGGAAGCAATGGCGGAAATCAACTATTCAACTTGTTCCTACTACCCCAATGACTCAAGCAAGTAATGCAGAAGCCCCAACAAAAACATCTCAATCAGTCAATGCTGATG---CATCAGTAAAAACAGAAAACAAGGTTGGTGAGATTGATACTCCTGCATTAAAATTACCCAGAGCGATGCGTTCTGCATCAACAAACGGAAACAACACCTTAAGAGAAAGGAACTCCGAGACTTATGATTCAGTTGTTGACTTGGCGATACATCCAGCTCCTAAGAGTCCTCTACGGAAGACGAAGGTAAAGGAGGAGAAAGAAAATTGAGAAGCATGATTTCCATTTGTTTGATCCAAATTGTATGTATAGAGGTTTGGTCTTGGCTGTTCTGCCACTGGATTTTTGTATGGCTAATCTTTTCTAACCTTAAAAAGAGGTGCCTCAATTGATCATAGATCCTGAAAGTATTAGGATACTAGAGTCTGGAGGCTCTAATCTGAAGAGCATCTCTGTTGTAATTCTTCAAAAACTTTTCCAATATTTAGTGAAATTGATTGTTTTTCGGTGCATACAA</genome_strand>
        <mrna_strand>TCAACGGAAGCAATGGCGGAAATCAACACTTCAACTTGTTCCTACTACCCCAATGACTCAAGCAAGTAATGCAGAAGCCCCAACAAAAACATCTCAATCAGTTAATGCTGATGATGCATCAGTAAAAACAGAAAACAAGGTTGGTGAGATTGATACTCCTGCATTAAAATTACCCAGAGCGATGCGTTCTGCATCAACAAACGGAAACAACACCTTAAGAGAAAGGAACTCCGAGACTTATGATTCAGTTGTTGACTTGGCGATACCTCCAGCTCCTAAGAGTCCTCTACGGAAGACGAAGGTAAAGGAGGAGAAAGAAAATTGAGAAGCATGATTTCCATTTGTTTGATCCAAATTGTATGTATAGAGGTTTGGTCTTGGCTGTTCTGCCACTGGATTTTTGTATGGCTAATCTTTTCTAACCTTAAAAAGAGGTGCCTCAATTGATCATAGATCCTGAAAGTATTAGGATACTAGAGTCTGGAGGCTTTAATCTGAAGAGCATCTCTGTTGTAATTCTTCAAAAACTTTTCCAATATTTAGTGAAATTGATTGTTTTTCGGTGCATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U344006" ref_strand="+" ref_description="SGN-U344006        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | argininosuccinate lyase, putative / arginosuccinase, putative, similar to argininosuccinate lyase (Nostoc punctiforme) GI:7672743; contains Pfam profile PF00206: Lyase | chr5:3441753-3444143 FORWARD | Aliases: T30N20.190, T30N20_190(evalue: 1e-85, score=313) genbank/nr: gi|15238899|ref|NP_196653.1| argininosuccinate lyase (AtArgH) [Arabidopsis thaliana] gi|11269745|pir||T50801 argininosuccinate lyase (AtArgH) - Arabidopsis thaliana gi|8979726|emb|CAB96847.1| argininosuccinate lyase (AtArgH) [Arabidopsis thaliana] gi|24030227|gb|AAN41291.1| argininosuccinate lyase (AtArgH) [Arabidopsis thaliana](evalue: 7e-84, score=313)">
      <seq>ttctttgacaacttcccccattttctcttcatccaaacacgcccttactcctaaaccccaaagcctctctttcaactccaatgctcgtttagtattgttcacctgtgcagcgcagcagatgaattcaccaccctctacggcggcgacgacggcggaaaaggaagtgaagctatggggtggccgtttcgaagagagcgttaccgatgctgtggagaagttcactgagtccatttcgtttgataaagctctctataaacaggatatcatgggtagtaaagctcatgcttcaatgcttgctaaacagggattgatgagtgatattgatagagatactatcataaaaggtcttgaagagatagagaggcaaattgaggcaggtgaatttgtatggagaacagatagagaggatgtgcatatgaatattgaagcagcacttactgatttggttggtgaacctgccaaaaagcttcacactgcccggagtagaaatgatcaggttgcaactgattttcgcttgtggtgtcgtgatgctattgacggaatcatttcacgcattaagaatcttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="-" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="113827" stop="112492"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113527" g_stop="113224" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113223" i_stop="113055" i_length="169">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="113054" g_stop="112792" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="567" r_length="263" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="-" ref_id="SGN-U344006" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U344006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113527" e_stop="113224"/>
          <exon e_start="113054" e_stop="112792"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTGACAACTTCCCCCATTTTCTCTTCATCCAAACACGCCCTTACTCCTAAACCCCAAAGCCTCTCTTTCAACTCCAATGCTCGTTTAGTATTGTTCACCTGTGCAGCGCAGCAGATGAATTCACCACCCTCTACGGCGGCGACGACGGCGGAAAAGGAAGTGAAGCTATGGGGTGGCCGTTTCGAAGAGAGCGTTACCGATGCTGTGGAGAAGTTCACTGAGTCCATTTCGTTTGATAAAGCTCTCTATAAACAGGATATCATGGGTAGTAAAGCTCATGCTTCAATGCTTGCTAAACAGGTTAATTTATACGTTTTTCGTTTCTGGGTATTGCCAAGATTGGTTCTTTTCATTAAGGGGTTTTCTTATATTTACAAACAATCAGTATTAGCAGTTTAAATTGTGACATTTTGTTCTAATGAGGATAAAGGGTGTTTCTAATGTATGTGAATTTGCAATAATGTTGCAGGGATTGATGAGTGATATTGATAGAGATACTATCATAAAAGGTCTTGAAGAGATAGAGAGGCAAATTGAGGCAGGTGAATTTGTATGGAGAACAGATAGAGAGGATGTGCATATGAATATTGAAGCAGCACTTACTGATTTGGTTGGTGAACCTGCCAAAAAGCTTCACACTGCCCGGAGTAGAAATGATCAGGTTGCAACTGATTTTCGCTTGTGGTGTCGTGATGCTATTGACGGAATCATTTCATGCATTAAGAATCTTCA</genome_strand>
        <mrna_strand>TTCTTTGACAACTTCCCCCATTTTCTCTTCATCCAAACACGCCCTTACTCCTAAACCCCAAAGCCTCTCTTTCAACTCCAATGCTCGTTTAGTATTGTTCACCTGTGCAGCGCAGCAGATGAATTCACCACCCTCTACGGCGGCGACGACGGCGGAAAAGGAAGTGAAGCTATGGGGTGGCCGTTTCGAAGAGAGCGTTACCGATGCTGTGGAGAAGTTCACTGAGTCCATTTCGTTTGATAAAGCTCTCTATAAACAGGATATCATGGGTAGTAAAGCTCATGCTTCAATGCTTGCTAAACAG.........................................................................................................................................................................GGATTGATGAGTGATATTGATAGAGATACTATCATAAAAGGTCTTGAAGAGATAGAGAGGCAAATTGAGGCAGGTGAATTTGTATGGAGAACAGATAGAGAGGATGTGCATATGAATATTGAAGCAGCACTTACTGATTTGGTTGGTGAACCTGCCAAAAAGCTTCACACTGCCCGGAGTAGAAATGATCAGGTTGCAACTGATTTTCGCTTGTGGTGTCGTGATGCTATTGACGGAATCATTTCACGCATTAAGAATCTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U336646" ref_strand="+" ref_description="SGN-U336646        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr5:26193247-26195140 FORWARD | Aliases: MNA5.18(evalue: 7e-07, score=51.6) genbank/nr: gi|15144509|gb|AAK84476.1| unknown [Lycopersicon esculentum](evalue: 3e-27, score=125)">
      <seq>aaatctctgctcagctcttatgttttatagctgtttttatagttatttttaataatcaatttttctggttcggtggttgaattattgaaaactatgtaacaaaaatctcttatccctctaatttttagatgttttttttcagattaaagagcaaaaaacaagaattggggttatgagttcttgatgtaaattgtgggatttgcacaatttttggttttatttttgagtttccaagaatcttgatacattcgtctgactctgtgtccggtgctgtattggataagtttctggatataggaagaaatggccatgacatttacccccttgtcatggttgctctggagtggaaagcatcaagaacccaaaatttccaatggttctttaaattcatcacctgaatcgttattgtgggaatcggatactttgaagtttcctcttgatcgcaggagggacatgacttcctcatcaagaagggttaagcggaaatggcagagtcgtgaggaacgaaagattgacagggaatatgatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="125897" stop="128288"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126197" g_stop="126431" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126432" i_stop="127692" i_length="1261">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127693" g_stop="127988" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="531" r_length="296" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U336646" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U336646" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126197" e_stop="126431"/>
          <exon e_start="127693" e_stop="127988"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTCTGCTCAGCTCTTATGTTTTATAGCTGTTTTTATAGTTATTTTTAATAATCAATTTTTCTGGTTCGGTGGTTGAATTATTGAAAACTATGTAACAAAAATCTCTTATCCCTCTAATTTTTAGATGTTTTTTTTCAGATTAAAGAGCAAAAAACAAGAATTGGGGTTATGAGTTCTTGATGTAAATTGTGGGATTTGCACAATTTTTGGTTTTATTTTTGAGTTTCCAAGGTATATTATACATTGGGTTAAAGTATTTTAATTTGTGTTCCCTTTAGTGGAGTTTTCTTGTTTTTTTTTCTGCAACTGAATCTTTTATAAAAAAAAATGTTCCAAGTTTGATGGAGAAGGGAAGTTTTTTAAGGTTCATTCATAAAGTTAGTAACTTTTTTGTTGTAGTTATCTGAAAATCAGATTAATTTTGAAAAAAAAAAAGATTTTATTTTTCTGTTATTTAAGAGGTGGTATAATTGGAAGGTGTAATTTTTCTTTTGGGGTTTTCTTGTTCTTATGTGACTGAATCTTTTATTAAAAAATGTTCCAAGTTTGATGGAGAAGGAAAGTTTTTAAGGTTCTTTATGAGACACCCAAGCTGGAAATCTCATAAAGTTTGTAACTTTTTTTTGTTGTAGTTATCTGAAAATTAGATTAATTTTTTAATAAAAGGTTTTATTTTTCTGTTTATTTATGAGGAGGTTGAATTGGAAAAAGCTGTAACTTTTCATCTGGGGTTTAGTTGAAAAATGTTTATTTTTATTTCTTGAAATTTTAGGTGCTAAATTCAGCTATTCTTCAGGGTCAAATGTTAGTTGTTGTATTCTATTATGACCTATTTTTGTGGGGTTTTTATTAGCTGTCAATTTTCTTGCCTTTGGTTCAAGTTGAATTGGAAAAAGCTGTAATTTTTCATCTGGGGTTTAATTGAAAAATGTTTATTTTTATTTCTTGAAATTTTAGGGTTCTAAATTCAGCTATTCTTCAGGGTCAAAATTCAAATATTAGTTGTTGTATTCTATTATGACCTATTTTTGTGGGGGGTTTATTAGCTGTCAATTTTCTTGCCTTTAGTTCAAGTTGAACTTGAACATGGTTTGAAAACTTGACTAAGTTAATTGCTAATAAAAAGGTAGAAGACAAAAAGGTGAAGAATTTGAATTATGTTGCATATTGTTTGTTTTATATATTAGAGAACTTGTTTATGTCTTACCTACCTGAATAATGACAACATTATAGGCCAGATACAATGGAAGGAAATCCCTCTTCCTTTGGGGTTCCATGGTTATAATATAAATAGAGATTCAAGGTTTCTGAACTCTTTTGTACTATTAATATGATAAAATAATTATAAGGATCTCTTTTCTTGATTTTGGCTTAAGCAATACATGCCTGTCTTGATGTTTGTTTGCCATCAATTTCATTGTGTTCATTTTCTTACCTTATCTGTCTTGGAATAGGAACAAATCACTCATTTAGTGTTTCATTGAGGTTCCAGAATCTTGATACATTCGTCTGACTCTGTGTCCGGTGCTGTATTGGATAAGTTTCTGGATATAGGAAGAAATGGCCATGACATTTACCCCCTTGTCATGGTTGCTCTGGAGTGGAAAGCATCAAGAACCCAAAATTTCCAATGGTTCTTTAAATTCATCACCTGAATCGTTATTGTGGGAATCGGATACTTTGAAGTTTCCTCTTGATCGCAGGAGGGACATGACTTCCTCATCAAGAAGGGTTAAGCGGAAATGGCAGAGTCGTGAGGAACGAAAGATTGACAGGGAATATGATATT</genome_strand>
        <mrna_strand>AAATCTCTGCTCAGCTCTTATGTTTTATAGCTGTTTTTATAGTTATTTTTAATAATCAATTTTTCTGGTTCGGTGGTTGAATTATTGAAAACTATGTAACAAAAATCTCTTATCCCTCTAATTTTTAGATGTTTTTTTTCAGATTAAAGAGCAAAAAACAAGAATTGGGGTTATGAGTTCTTGATGTAAATTGTGGGATTTGCACAATTTTTGGTTTTATTTTTGAGTTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTTGATACATTCGTCTGACTCTGTGTCCGGTGCTGTATTGGATAAGTTTCTGGATATAGGAAGAAATGGCCATGACATTTACCCCCTTGTCATGGTTGCTCTGGAGTGGAAAGCATCAAGAACCCAAAATTTCCAATGGTTCTTTAAATTCATCACCTGAATCGTTATTGTGGGAATCGGATACTTTGAAGTTTCCTCTTGATCGCAGGAGGGACATGACTTCCTCATCAAGAAGGGTTAAGCGGAAATGGCAGAGTCGTGAGGAACGAAAGATTGACAGGGAATATGATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318858" ref_strand="+" ref_description="SGN-U318858        Tomato 200607 #1 [14 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr4:17873003-17874801 REVERSE | Aliases: None(evalue: 9e-14, score=74.7) genbank/nr: gi|15144509|gb|AAK84476.1| unknown [Lycopersicon esculentum](evalue: 5e-39, score=164)">
      <seq>tcggtggttgaattattgaaaactatgtaacaaaaatctcttatccctctaatttttagatgttttttttcagattaaagagcaaaaaacaagaattggggttatgagttcttgatgtaaattgtgggatttgcacaatttttggttttatttttgagtttccaaggaacaaatcactcatttagtgtttcattgaggttccagaatcttgatacattcgtctgactctgtgtccggtgctgtattggataagtttctggatataggaagaaatggccatgacatttacccccttgtcatggttgctctggagtggaaagcatcaagaacccaaaatttccaatggttctttaaattcatcacctgaatcgttattgtgggaatcggatactttgaagtttcctcttgatcgcaggagggacatgacttcctcatcaagaagggttaagcggaaatggcagagtcgtgaggaacgaaagattgacagggaatatgatattgttattgtgccatcagatggtggatgtgtttcagggtctgagtccgaggattcagattggtcagttggatggttggagcctcatggacctggattcaatagtgatgatgatttagatgatagctttgctgtgcttgttccttgctatggctacggttgtgcaaatgtggaagaaaatgcccaagataagtttctgcaagccattggaaacttgaaggatttatatgatactgagaataagaagtatatggagcactgggtctcatctctgagagatcactgaaatccagcagcgcctatggtgctgatcagaacttgttttctgctgcctatcctgattctattttgcagtggatcaaacttgagctgttatggttactcattacaagcttagatatgaactctgtagaaatataaagatataatcctacaacaaaacgaaaaaaaaaaagagtgtggaaataatgtatattcgtagaaagatgagtgagcttgaagggctttaatatttgaggagaagaaacagcagacgatataggtatctgctgcttccaatccacctgatgcatctcgaaaaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="125966" stop="130064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126266" g_stop="126431" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="126432" i_stop="127654" i_length="1223">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.856" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="127655" g_stop="128220" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="732" r_length="566" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="128221" i_stop="129411" i_length="1191">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="129412" g_stop="129767" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="733" r_stop="1089" r_length="357" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U318858" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1088</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U318858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126266" e_stop="126431"/>
          <exon e_start="127655" e_stop="128220"/>
          <exon e_start="129412" e_stop="129767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTGGTTGAATTATTGAAAACTATGTAACAAAAATCTCTTATCCCTCTAATTTTTAGATGTTTTTTTTCAGATTAAAGAGCAAAAAACAAGAATTGGGGTTATGAGTTCTTGATGTAAATTGTGGGATTTGCACAATTTTTGGTTTTATTTTTGAGTTTCCAAGGTATATTATACATTGGGTTAAAGTATTTTAATTTGTGTTCCCTTTAGTGGAGTTTTCTTGTTTTTTTTTCTGCAACTGAATCTTTTATAAAAAAAAATGTTCCAAGTTTGATGGAGAAGGGAAGTTTTTTAAGGTTCATTCATAAAGTTAGTAACTTTTTTGTTGTAGTTATCTGAAAATCAGATTAATTTTGAAAAAAAAAAAGATTTTATTTTTCTGTTATTTAAGAGGTGGTATAATTGGAAGGTGTAATTTTTCTTTTGGGGTTTTCTTGTTCTTATGTGACTGAATCTTTTATTAAAAAATGTTCCAAGTTTGATGGAGAAGGAAAGTTTTTAAGGTTCTTTATGAGACACCCAAGCTGGAAATCTCATAAAGTTTGTAACTTTTTTTTGTTGTAGTTATCTGAAAATTAGATTAATTTTTTAATAAAAGGTTTTATTTTTCTGTTTATTTATGAGGAGGTTGAATTGGAAAAAGCTGTAACTTTTCATCTGGGGTTTAGTTGAAAAATGTTTATTTTTATTTCTTGAAATTTTAGGTGCTAAATTCAGCTATTCTTCAGGGTCAAATGTTAGTTGTTGTATTCTATTATGACCTATTTTTGTGGGGTTTTTATTAGCTGTCAATTTTCTTGCCTTTGGTTCAAGTTGAATTGGAAAAAGCTGTAATTTTTCATCTGGGGTTTAATTGAAAAATGTTTATTTTTATTTCTTGAAATTTTAGGGTTCTAAATTCAGCTATTCTTCAGGGTCAAAATTCAAATATTAGTTGTTGTATTCTATTATGACCTATTTTTGTGGGGGGTTTATTAGCTGTCAATTTTCTTGCCTTTAGTTCAAGTTGAACTTGAACATGGTTTGAAAACTTGACTAAGTTAATTGCTAATAAAAAGGTAGAAGACAAAAAGGTGAAGAATTTGAATTATGTTGCATATTGTTTGTTTTATATATTAGAGAACTTGTTTATGTCTTACCTACCTGAATAATGACAACATTATAGGCCAGATACAATGGAAGGAAATCCCTCTTCCTTTGGGGTTCCATGGTTATAATATAAATAGAGATTCAAGGTTTCTGAACTCTTTTGTACTATTAATATGATAAAATAATTATAAGGATCTCTTTTCTTGATTTTGGCTTAAGCAATACATGCCTGTCTTGATGTTTGTTTGCCATCAATTTCATTGTGTTCATTTTCTTACCTTATCTGTCTTGGAATAGGAACAAATCACTCATTTAGTGTTTCATTGAGGTTCCAGAATCTTGATACATTCGTCTGACTCTGTGTCCGGTGCTGTATTGGATAAGTTTCTGGATATAGGAAGAAATGGCCATGACATTTACCCCCTTGTCATGGTTGCTCTGGAGTGGAAAGCATCAAGAACCCAAAATTTCCAATGGTTCTTTAAATTCATCACCTGAATCGTTATTGTGGGAATCGGATACTTTGAAGTTTCCTCTTGATCGCAGGAGGGACATGACTTCCTCATCAAGAAGGGTTAAGCGGAAATGGCAGAGTCGTGAGGAACGAAAGATTGACAGGGAATATGATATTGTTATTGTGCCATCAGATGGTGGATGTGTTTCAGGGTCTGAGTCCGAGGATTCAGATTGGTCAGTTGGATGGTTGGAGCCTCATGGACCTGGATTCAATAGTGATGATGATTTAGATGATAGCTTTGCTGTGCTTGTTCCTTGCTATGGCTACGGTTGTGCAAATGTGGAAGAAAATGCCCAAGATAAGTTTCTGCAAGCCATTGGAAACTTGAAGGATTTATATGATACTGGTACGAGTCTCTGGCTGTTATGTTCTTGTTATAGGAATATTGTTTCTAATATTGTATGTATCTCTTGGATGACGCGGAAAATTGAGTCTTGACCAATGCTTTTCAAAGATTATTATACTCATTGTTGTAGAAAACCTTATATTGTAAAAGACTACAGGCTAATCACAGATTGCTGGCAACCTAGGCTATCTAAGAGAAACACAAGTGGTGATGTTCATAAAGATTTGCTGCATTTGCAAAATACCCGACTCACAACAAGCTCTATTCATTGAAAAGGTCCTTCCCCAGTTACAATCATTATAACCATGTGGATGATGAGGATATATGCCAGTACTCTTCGCTATATAAATCAATGCATTACTGGTTCCTCATTTAGTTTTAACATACCTAACATGAGATTAGACCATTAGGGTTGACACAAAGTACTGCAGTAGTTGTTGCAGTTATAATAAGAGAGTATGCAATGCCCAAGTGAGTAACAGATGTCATGAGGCTAGAATTCCAACACGTGACACTTCGCCACTAGGTTGATACCTTAGGGACCTCATTGATCAAAGGAGTTATAAATTCCAAAACCTGTATTGATAGAGTATGAATGATGATACAATTGCTTCTTGACACCAAGAGAGGAATGTGGCAATGCTTCTAAACCAACTAACTTAATGAATGTTTCAGTTGCTTTACTATGTTTACAGATCTGAGTATTCGGTTTAGCTGAAAATTGAAATGGTTTCACTTTTGCTAGTTTCGTTTGATCAAAAAGTCGTAATCTTGCTTCAAGGATATAATCAGTTCAATTTAACTCTTCCTGCTTTTTAACTTTGCTGTTATCAGAGAGACCTAATTTTTTCTCAACATTGTTCTATAGCTATTACAAGTAATTTTAAAAACTTATTCGTTTCTATGTAATTGAACATAAATATCGGCAACAACCCCTCTACCTCTCACAATATAGGGGTAAGGTCTGCATGCACCCCACCCTCCCCTGACCCCAGTTGTGGGATCACACTGGGTATATGCTGTTGTTGCTTATTGTATCTGATTGAACATAAAGTCATCAATAATGCATTGAATTAGTTAAAGAGACAAAAAATAAGATCTATGATGAGTAAATTATATTCAGCTTTCCCTTTTCGTCACAGTTCTTAGTTTTGTACCTTGTATGATTTAGGCTTCTTGATTTCGTTGCAGAGAATAAGAAGTATATGGAGCACTGGGTCTCATCTCTGAGAGATCACTGAAATCCAGCAGCGCCTATGGTGCTGATCAGAACTTGTTTTCTGCTGCCTATCCTGATTCTATTTTGCAGTGGATCAAACTTGAGCTGTTATGGTTACTCATTACAAGCTTAGATATGAACTCTGTAGAAATATAAAGATATAATCCTACAACAAAACG-AAAAAAAAAAGAGTGTGGAAATAATGTATATTCGTAGAAAGATGAGTGAGCTTGAAGGGCTTTAATATTTGAGGAGAAGAAACAGCAGACGATATAGGTATCTGCTGCTTCCAATCCACCTGATGCATCTCGAAAAGGAAAAAAAATGA</genome_strand>
        <mrna_strand>TCGGTGGTTGAATTATTGAAAACTATGTAACAAAAATCTCTTATCCCTCTAATTTTTAGATGTTTTTTTTCAGATTAAAGAGCAAAAAACAAGAATTGGGGTTATGAGTTCTTGATGTAAATTGTGGGATTTGCACAATTTTTGGTTTTATTTTTGAGTTTCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAAATCACTCATTTAGTGTTTCATTGAGGTTCCAGAATCTTGATACATTCGTCTGACTCTGTGTCCGGTGCTGTATTGGATAAGTTTCTGGATATAGGAAGAAATGGCCATGACATTTACCCCCTTGTCATGGTTGCTCTGGAGTGGAAAGCATCAAGAACCCAAAATTTCCAATGGTTCTTTAAATTCATCACCTGAATCGTTATTGTGGGAATCGGATACTTTGAAGTTTCCTCTTGATCGCAGGAGGGACATGACTTCCTCATCAAGAAGGGTTAAGCGGAAATGGCAGAGTCGTGAGGAACGAAAGATTGACAGGGAATATGATATTGTTATTGTGCCATCAGATGGTGGATGTGTTTCAGGGTCTGAGTCCGAGGATTCAGATTGGTCAGTTGGATGGTTGGAGCCTCATGGACCTGGATTCAATAGTGATGATGATTTAGATGATAGCTTTGCTGTGCTTGTTCCTTGCTATGGCTACGGTTGTGCAAATGTGGAAGAAAATGCCCAAGATAAGTTTCTGCAAGCCATTGGAAACTTGAAGGATTTATATGATACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATAAGAAGTATATGGAGCACTGGGTCTCATCTCTGAGAGATCACTGAAATCCAGCAGCGCCTATGGTGCTGATCAGAACTTGTTTTCTGCTGCCTATCCTGATTCTATTTTGCAGTGGATCAAACTTGAGCTGTTATGGTTACTCATTACAAGCTTAGATATGAACTCTGTAGAAATATAAAGATATAATCCTACAACAAAACGAAAAAAAAAAAGAGTGTGGAAATAATGTATATTCGTAGAAAGATGAGTGAGCTTGAAGGGCTTTAATATTTGAGGAGAAGAAACAGCAGACGATATAGGTATCTGCTGCTTCCAATCCACCTGATGCATCTCGAAAAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325776" ref_strand="+" ref_description="SGN-U325776        Tomato 200607 #1 [5 ESTs aligned]">
      <seq>ttcccacaaggctttagtatttcatggtatttgatctccagaattgtctccgaagatgtgacctctacttgcaatgcttcttcatgaacattggtgtaaattttcgatgtaaagtgactggaaggagacagaaagaaatggatgatggaggacacaatattcttaaaaagagggtaaggcacagctgtgtgttctgctttatatcattctttgatgtaaatatatctgtgaatatgtaaatatgttcatctagtttgtaaatacgtcgtgtgaagtttgataaccttcataagtattgtaaataattgtaaacctcagacagcatttgtttgcaataatatgcctcttgctgtttaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0272I08-UIDS8/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0272I08.1" temp_strand="+" temp_description="C04HBa0272I08.1  CU468638.8 htgs_phase:3 submitted_to_sgn_as:C04HBa0272I08 sequenced_by:sanger upload_account_name:uk">
        <position start="129496" stop="130440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129796" g_stop="130135" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="351" r_length="340" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="370"/>
      <MATCH_line gen_id="C04HBa0272I08.1" gen_strand="+" ref_id="SGN-U325776" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>340</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0272I08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129796" e_stop="130135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTAGTATTTCATGGTATTTGATCTCCAGAATTGTCTCCGAAGATGTGACCTCTACTTGCAATGCTTCTTCATGAACATTGGTGTAAATTTTCGATGTAAAGTGACTGGAAGGAGACAGAAAGAAATGGATGATGGAGGACACAATATTCTTAAAAAGAGGGTAAGGCACAGCTGTGTGTTCTGCTTTATATCATTCTTTGATGTAAATATATCTGTGAATATGTAAATATGTTCATCTAGTTTGTAAATACGTCGCGTGAAGTTTGATAACCTTCATAAGTATTGTAAATAATTGTAAACCTCAGACAGCATTTGTTTGCAATAATATGCCTCTTGCT</genome_strand>
        <mrna_strand>CTTTAGTATTTCATGGTATTTGATCTCCAGAATTGTCTCCGAAGATGTGACCTCTACTTGCAATGCTTCTTCATGAACATTGGTGTAAATTTTCGATGTAAAGTGACTGGAAGGAGACAGAAAGAAATGGATGATGGAGGACACAATATTCTTAAAAAGAGGGTAAGGCACAGCTGTGTGTTCTGCTTTATATCATTCTTTGATGTAAATATATCTGTGAATATGTAAATATGTTCATCTAGTTTGTAAATACGTCGTGTGAAGTTTGATAACCTTCATAAGTATTGTAAATAATTGTAAACCTCAGACAGCATTTGTTTGCAATAATATGCCTCTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>23</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1677" PGL_stop="1221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1677" e_stop="1221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="1677" e_stop="1221" e_length="457"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1677" stop="1221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343296" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAGAACTTGAACCTCTACAATCTTCTTAGTGGCTTAAATAACTTTCGTCTATCTATGGTGGTCTTATGCGTTATGCAACCTGTCAGACTGAAGTCTTTTATTCTGTTGTAAGTTTCCTATTCTCTGTCTCTGGGGACCATTCTCACCACAATGCTTGTATTTGGTCACCGCTGGGATGACTACGTGTTTCTTTCATTCATCATTTTGGAGGCATTGTTCTTCTGACTACTATTCCGGTAATTCTTTCAGAATTTTTCAAGCAAAACATTCCAGAAAATTACGTTTCTACTGTTTCTTCATAATTTTGGAGTCTCCAAATTTTAGCTTTCGATAACTGTTTGGGGGGGGGGGGGGGGGGAGTTTTTTACTCTCTTTTTCCTCACGGTAGTTAAGAGTACTGAGATTCTCCTCTGAGCATTGAATTCCTAGAAAAGATTTTTTTTTGCCTACTTTTC</gDNA_template>
            <first_frame> N  R  T  *  T  S  T  I  F  L  V  A  *  I  T  F  V  Y  L  W  W  S  Y  A  L  C  N  L  S  D  *  S  L  L  F  C  C  K  F  P  I  L  C  L  W  G  P  F  S  P  Q  C  L  Y  L  V  T  A  G  M  T  T  C  F  F  H  S  S  F  W  R  H  C  S  S  D  Y  Y  S  G  N  S  F  R  I  F  Q  A  K  H  S  R  K  L  R  F  Y  C  F  F  I  I  L  E  S  P  N  F  S  F  R  *  L  F  G  G  G  G  G  G  S  F  L  L  S  F  S  S  R  *  L  R  V  L  R  F  S  S  E  H  *  I  P  R  K  D  F  F  L  P  T  F  </first_frame>
            <second_frame>  I  E  L  E  P  L  Q  S  S  *  W  L  K  *  L  S  S  I  Y  G  G  L  M  R  Y  A  T  C  Q  T  E  V  F  Y  S  V  V  S  F  L  F  S  V  S  G  D  H  S  H  H  N  A  C  I  W  S  P  L  G  *  L  R  V  S  F  I  H  H  F  G  G  I  V  L  L  T  T  I  P  V  I  L  S  E  F  F  K  Q  N  I  P  E  N  Y  V  S  T  V  S  S  *  F  W  S  L  Q  I  L  A  F  D  N  C  L  G  G  G  G  G  G  V  F  Y  S  L  F  P  H  G  S  *  E  Y  *  D  S  P  L  S  I  E  F  L  E  K  I  F  F  C  L  L  F </second_frame>
            <third_frame>   *  N  L  N  L  Y  N  L  L  S  G  L  N  N  F  R  L  S  M  V  V  L  C  V  M  Q  P  V  R  L  K  S  F  I  L  L  *  V  S  Y  S  L  S  L  G  T  I  L  T  T  M  L  V  F  G  H  R  W  D  D  Y  V  F  L  S  F  I  I  L  E  A  L  F  F  *  L  L  F  R  *  F  F  Q  N  F  S  S  K  T  F  Q  K  I  T  F  L  L  F  L  H  N  F  G  V  S  K  F  *  L  S  I  T  V  W  G  G  G  G  G  E  F  F  T  L  F  F  L  T  V  V  K  S  T  E  I  L  L  *  A  L  N  S  *  K  R  F  F  F  A  Y  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1584" stop="1342"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLFCCKFPILCLWGPFSPQCLYLVTAGMTTCFFHSSFWRHCSSDYYSGNSFRIFQAKHSRKLRFYCFFIILESPNFSFR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="21427" PGL_stop="25445"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21427" e_stop="21511"/>
            <exon e_start="21623" e_stop="21835"/>
            <exon e_start="22182" e_stop="22276"/>
            <exon e_start="22327" e_stop="22835"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="0.976"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.000" e_score="0.758"/>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="21427" e_stop="21511" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="21512" i_stop="21622" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21623" e_stop="21835" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21836" i_stop="22181" i_length="346"/>
          </intron>
          <exon e_serial="3" e_score="0.758">
            <gDNA_exon_boundary e_start="22182" e_stop="22276" e_length="95"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22277" i_stop="22326" i_length="50"/>
          </intron>
          <exon e_serial="4" e_score="0.927">
            <gDNA_exon_boundary e_start="22327" e_stop="22835" e_length="509"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21427" stop="21511"/>
              <exon start="21623" stop="21835"/>
              <exon start="22182" stop="22276"/>
              <exon start="22327" stop="22835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324273" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGTAAATCGTATGAGAGGGCTAAGAAAAAGTTAAAAGTGGTGGAGGCTCCTAATGTCCTCACTGTTGCATTGAAGAGATTTCAG : TCAGGTAAATTTGGGAAGCTAAACAAGACAATCAAATTCCCTGAGTTTTTGAACCTGGCACCATATATGAGTGGGACAAGTGATAAGTCACCAGTTTATCAGCTGTATGGAGTTGTGGTTCACCTGGACGTAATGAATGCTGCATTTTCTGGTCACTATGTGTGTTACGTGAGGAACTTTCAGAACAAGTGGTATAAAGTTGATGATAGTTCG : GTTAAATCTGTGGAACTAGAAAGAGTCTTGTCGAAGGGAGCGTACATGCTTCTTTATTCAAGGTAAAATTATAGACGCATCTCCTTCTAGTTGAG : TTTTTTAGGTGCTCGCCACGGGCCCCGAGGATAATGAGGAGTCTGAAATCAAGATCCCATACAAGAAGTCCATGGGACTCTTCACATGGCGACTCAACTAGTAAAACTTGCAAGGGATGTTCTTATCCTAGTCATACAAGTGTGAGGCCTATTAGGTCTATATTTGAGGAGGACTCTTCGAGTGAACAATCATCTTTCTTCTCTGAGCTTGGTTCTTGCAGTACAGACAGCACTAACAGGGATTCAACGAGCACAGATGACTTAAATATTGATATATTTGGCGACTCTGGGGTCTGTTGGAATAGCCTCTGGAGGAGTTCATCTGATTCTGACACATCCTCATCCTCATCTTCTCCTTCCCCTCTGTACTCGAGGCATTCACCCCTTGCTGATTTGGACCGTTATGCTTCTGCTCGTGAAGAGACCAGTTGCAGCGTCAACCCAGAAACAGCTGGGGATGGTCAGGGTTTTTGGACAGGGTTACGTGATCGTAACAGTTATACTGGCGT</gDNA_template>
            <first_frame> M  *  I  V  *  E  G  *  E  K  V  K  S  G  G  G  S  *  C  P  H  C  C  I  E  E  I  S   : V  R  *  I  W  E  A  K  Q  D  N  Q  I  P  *  V  F  E  P  G  T  I  Y  E  W  D  K  *  *  V  T  S  L  S  A  V  W  S  C  G  S  P  G  R  N  E  C  C  I  F  W  S  L  C  V  L  R  E  E  L  S  E  Q  V  V  *  S  *  *  *  F   : G  *  I  C  G  T  R  K  S  L  V  E  G  S  V  H  A  S  L  F  K  V  K  L  *  T  H  L  L  L  V  E  :  F  F  R  C  S  P  R  A  P  R  I  M  R  S  L  K  S  R  S  H  T  R  S  P  W  D  S  S  H  G  D  S  T  S  K  T  C  K  G  C  S  Y  P  S  H  T  S  V  R  P  I  R  S  I  F  E  E  D  S  S  S  E  Q  S  S  F  F  S  E  L  G  S  C  S  T  D  S  T  N  R  D  S  T  S  T  D  D  L  N  I  D  I  F  G  D  S  G  V  C  W  N  S  L  W  R  S  S  S  D  S  D  T  S  S  S  S  S  S  P  S  P  L  Y  S  R  H  S  P  L  A  D  L  D  R  Y  A  S  A  R  E  E  T  S  C  S  V  N  P  E  T  A  G  D  G  Q  G  F  W  T  G  L  R  D  R  N  S  Y  T  G   </first_frame>
            <second_frame>  C  K  S  Y  E  R  A  K  K  K  L  K  V  V  E  A  P  N  V  L  T  V  A  L  K  R  F  Q  :  S  G  K  F  G  K  L  N  K  T  I  K  F  P  E  F  L  N  L  A  P  Y  M  S  G  T  S  D  K  S  P  V  Y  Q  L  Y  G  V  V  V  H  L  D  V  M  N  A  A  F  S  G  H  Y  V  C  Y  V  R  N  F  Q  N  K  W  Y  K  V  D  D  S  S  :  V  K  S  V  E  L  E  R  V  L  S  K  G  A  Y  M  L  L  Y  S  R  *  N  Y  R  R  I  S  F  *  L  S :   F  L  G  A  R  H  G  P  R  G  *  *  G  V  *  N  Q  D  P  I  Q  E  V  H  G  T  L  H  M  A  T  Q  L  V  K  L  A  R  D  V  L  I  L  V  I  Q  V  *  G  L  L  G  L  Y  L  R  R  T  L  R  V  N  N  H  L  S  S  L  S  L  V  L  A  V  Q  T  A  L  T  G  I  Q  R  A  Q  M  T  *  I  L  I  Y  L  A  T  L  G  S  V  G  I  A  S  G  G  V  H  L  I  L  T  H  P  H  P  H  L  L  L  P  L  C  T  R  G  I  H  P  L  L  I  W  T  V  M  L  L  L  V  K  R  P  V  A  A  S  T  Q  K  Q  L  G  M  V  R  V  F  G  Q  G  Y  V  I  V  T  V  I  L  A  </second_frame>
            <third_frame>   V  N  R  M  R  G  L  R  K  S  *  K  W  W  R  L  L  M  S  S  L  L  H  *  R  D  F  S :   Q  V  N  L  G  S  *  T  R  Q  S  N  S  L  S  F  *  T  W  H  H  I  *  V  G  Q  V  I  S  H  Q  F  I  S  C  M  E  L  W  F  T  W  T  *  *  M  L  H  F  L  V  T  M  C  V  T  *  G  T  F  R  T  S  G  I  K  L  M  I  V  R :   L  N  L  W  N  *  K  E  S  C  R  R  E  R  T  C  F  F  I  Q  G  K  I  I  D  A  S  P  S  S  *   : V  F  *  V  L  A  T  G  P  E  D  N  E  E  S  E  I  K  I  P  Y  K  K  S  M  G  L  F  T  W  R  L  N  *  *  N  L  Q  G  M  F  L  S  *  S  Y  K  C  E  A  Y  *  V  Y  I  *  G  G  L  F  E  *  T  I  I  F  L  L  *  A  W  F  L  Q  Y  R  Q  H  *  Q  G  F  N  E  H  R  *  L  K  Y  *  Y  I  W  R  L  W  G  L  L  E  *  P  L  E  E  F  I  *  F  *  H  I  L  I  L  I  F  S  F  P  S  V  L  E  A  F  T  P  C  *  F  G  P  L  C  F  C  S  *  R  D  Q  L  Q  R  Q  P  R  N  S  W  G  W  S  G  F  L  D  R  V  T  *  S  *  Q  L  Y  W  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22256" stop="22276"/>
                    <exon start="22327" stop="22833"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THLLLVEFFRCSPRAPRIMRSLKSRSHTRSPWDSSHGDSTSKTCKGCSYPSHTSVRPIRSIFEEDSSSEQSSFFSELGSCSTDSTNRDSTSTDDLNIDIFGDSGVCWNSLWRSSSDSDTSSSSSSPSPLYSRHSPLADLDRYASAREETSCSVNPETAGDGQGFWTGLRDRNSYTG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21428" stop="21511"/>
                    <exon start="21623" stop="21835"/>
                    <exon start="22182" stop="22247"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CKSYERAKKKLKVVEAPNVLTVALKRFQSGKFGKLNKTIKFPEFLNLAPYMSGTSDKSPVYQLYGVVVHLDVMNAAFSGHYVCYVRNFQNKWYKVDDSSVKSVELERVLSKGAYMLLYSR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="21458" e_stop="21511"/>
            <exon e_start="21623" e_stop="21835"/>
            <exon e_start="22182" e_stop="22243"/>
            <exon e_start="22335" e_stop="23169"/>
            <exon e_start="25392" e_stop="25445"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.900" e_score="1.000"/>
          <exon-intron don_prob="0.965" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.989"/>
          <exon-only e_score="0.630"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21458" e_stop="21511" e_length="54"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.900">
            <gDNA_intron_boundary i_start="21512" i_stop="21622" i_length="111"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21623" e_stop="21835" e_length="213"/>
          </exon>
          <intron i_serial="2" don_prob="0.965" acc_prob="0.999">
            <gDNA_intron_boundary i_start="21836" i_stop="22181" i_length="346"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="22182" e_stop="22243" e_length="62"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="1.000">
            <gDNA_intron_boundary i_start="22244" i_stop="22334" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="22335" e_stop="23169" e_length="835"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="23170" i_stop="25391" i_length="2222"/>
          </intron>
          <exon e_serial="5" e_score="0.630">
            <gDNA_exon_boundary e_start="25392" e_stop="25445" e_length="54"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21458" stop="21511"/>
              <exon start="21623" stop="21835"/>
              <exon start="22182" stop="22243"/>
              <exon start="22335" stop="23169"/>
              <exon start="25392" stop="25445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U324274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAAAAGTGGTGGAGGCTCCTAATGTCCTCACTGTTGCATTGAAGAGATTTCAG : TCAGGTAAATTTGGGAAGCTAAACAAGACAATCAAATTCCCTGAGTTTTTGAACCTGGCACCATATATGAGTGGGACAAGTGATAAGTCACCAGTTTATCAGCTGTATGGAGTTGTGGTTCACCTGGACGTAATGAATGCTGCATTTTCTGGTCACTATGTGTGTTACGTGAGGAACTTTCAGAACAAGTGGTATAAAGTTGATGATAGTTCG : GTTAAATCTGTGGAACTAGAAAGAGTCTTGTCGAAGGGAGCGTACATGCTTCTTTATTCAAG : GTGCTCGCCACGGGCCCCGAGGATAATGAGGAGTCTGAAATCAAGATCCCATACAAGAAGTCCATGGGACTCTTCACATGGCGACTCAACTAGTAAAACTTGCAAGGGATGTTCTTATCCTAGTCATACAAGTGTGAGGCCTATTAGGTCTATATTTGAGGAGGACTCTTCGAGTGAACAATCATCTTTCTTCTCTGAGCTTGGTTCTTGCAGTACAGACAGCACTAACAGGGATTCAACGAGCACAGATGACTTAAATATTGATATATTTGGCGACTCTGGGGTCTGTTGGAATAGCCTCTGGAGGAGTTCATCTGATTCTGACACATCCTCATCCTCATCTTCTCCTTCCCCTCTGTACTCGAGGCATTCACCCCTTGCTGATTTGGACCGTTATGCTTCTGCTCGTGAAGAGACCAGTTGCAGCGTCAACCCAGAAACAGCTGGGGATGGTCAGGGTTTTTGGACAGGGTTACGTGATCGTAACAGTTATACTGGCGTTCCAGAAACCAGCGGAAGGACACCACCTCTCTGTCCCAACCCAACTAAACATTGTAGAAAAGTAGTTAGTAGTCATAGTAGTAGTAATACCGACTCCAGTAGATTAGGTCGGGTTAACCCTTGTGACAAGTCGAAATCTCCTGTAACTTGTAGAGATCGATGAGGGGAAAAGGTGCCTTCTGGACATCGGTGTTATAAAGTATTTTTGTATTCTAGAGGGAGGGAAATAAAAGAATTTGGGAGGCACAGGGGGTTTAGGGAGTGGTTGTATGTATTATATACATTGGCTATTAGCTGTGTTCAAAACAACAAGGAGGCCATAATTTTGTCACTC : AAATAATTAATATAAAATAATAAATCGTCAATAAAATAAGTAAAATATATACAA</gDNA_template>
            <first_frame> L  K  V  V  E  A  P  N  V  L  T  V  A  L  K  R  F  Q  :  S  G  K  F  G  K  L  N  K  T  I  K  F  P  E  F  L  N  L  A  P  Y  M  S  G  T  S  D  K  S  P  V  Y  Q  L  Y  G  V  V  V  H  L  D  V  M  N  A  A  F  S  G  H  Y  V  C  Y  V  R  N  F  Q  N  K  W  Y  K  V  D  D  S  S  :  V  K  S  V  E  L  E  R  V  L  S  K  G  A  Y  M  L  L  Y  S  R :   C  S  P  R  A  P  R  I  M  R  S  L  K  S  R  S  H  T  R  S  P  W  D  S  S  H  G  D  S  T  S  K  T  C  K  G  C  S  Y  P  S  H  T  S  V  R  P  I  R  S  I  F  E  E  D  S  S  S  E  Q  S  S  F  F  S  E  L  G  S  C  S  T  D  S  T  N  R  D  S  T  S  T  D  D  L  N  I  D  I  F  G  D  S  G  V  C  W  N  S  L  W  R  S  S  S  D  S  D  T  S  S  S  S  S  S  P  S  P  L  Y  S  R  H  S  P  L  A  D  L  D  R  Y  A  S  A  R  E  E  T  S  C  S  V  N  P  E  T  A  G  D  G  Q  G  F  W  T  G  L  R  D  R  N  S  Y  T  G  V  P  E  T  S  G  R  T  P  P  L  C  P  N  P  T  K  H  C  R  K  V  V  S  S  H  S  S  S  N  T  D  S  S  R  L  G  R  V  N  P  C  D  K  S  K  S  P  V  T  C  R  D  R  *  G  E  K  V  P  S  G  H  R  C  Y  K  V  F  L  Y  S  R  G  R  E  I  K  E  F  G  R  H  R  G  F  R  E  W  L  Y  V  L  Y  T  L  A  I  S  C  V  Q  N  N  K  E  A  I  I  L  S  L  :  K  *  L  I  *  N  N  K  S  S  I  K  *  V  K  Y  I  Q </first_frame>
            <second_frame>  *  K  W  W  R  L  L  M  S  S  L  L  H  *  R  D  F  S :   Q  V  N  L  G  S  *  T  R  Q  S  N  S  L  S  F  *  T  W  H  H  I  *  V  G  Q  V  I  S  H  Q  F  I  S  C  M  E  L  W  F  T  W  T  *  *  M  L  H  F  L  V  T  M  C  V  T  *  G  T  F  R  T  S  G  I  K  L  M  I  V  R :   L  N  L  W  N  *  K  E  S  C  R  R  E  R  T  C  F  F  I  Q   : G  A  R  H  G  P  R  G  *  *  G  V  *  N  Q  D  P  I  Q  E  V  H  G  T  L  H  M  A  T  Q  L  V  K  L  A  R  D  V  L  I  L  V  I  Q  V  *  G  L  L  G  L  Y  L  R  R  T  L  R  V  N  N  H  L  S  S  L  S  L  V  L  A  V  Q  T  A  L  T  G  I  Q  R  A  Q  M  T  *  I  L  I  Y  L  A  T  L  G  S  V  G  I  A  S  G  G  V  H  L  I  L  T  H  P  H  P  H  L  L  L  P  L  C  T  R  G  I  H  P  L  L  I  W  T  V  M  L  L  L  V  K  R  P  V  A  A  S  T  Q  K  Q  L  G  M  V  R  V  F  G  Q  G  Y  V  I  V  T  V  I  L  A  F  Q  K  P  A  E  G  H  H  L  S  V  P  T  Q  L  N  I  V  E  K  *  L  V  V  I  V  V  V  I  P  T  P  V  D  *  V  G  L  T  L  V  T  S  R  N  L  L  *  L  V  E  I  D  E  G  K  R  C  L  L  D  I  G  V  I  K  Y  F  C  I  L  E  G  G  K  *  K  N  L  G  G  T  G  G  L  G  S  G  C  M  Y  Y  I  H  W  L  L  A  V  F  K  T  T  R  R  P  *  F  C  H  S :   N  N  *  Y  K  I  I  N  R  Q  *  N  K  *  N  I  Y   </second_frame>
            <third_frame>   K  S  G  G  G  S  *  C  P  H  C  C  I  E  E  I  S   : V  R  *  I  W  E  A  K  Q  D  N  Q  I  P  *  V  F  E  P  G  T  I  Y  E  W  D  K  *  *  V  T  S  L  S  A  V  W  S  C  G  S  P  G  R  N  E  C  C  I  F  W  S  L  C  V  L  R  E  E  L  S  E  Q  V  V  *  S  *  *  *  F   : G  *  I  C  G  T  R  K  S  L  V  E  G  S  V  H  A  S  L  F  K  :  V  L  A  T  G  P  E  D  N  E  E  S  E  I  K  I  P  Y  K  K  S  M  G  L  F  T  W  R  L  N  *  *  N  L  Q  G  M  F  L  S  *  S  Y  K  C  E  A  Y  *  V  Y  I  *  G  G  L  F  E  *  T  I  I  F  L  L  *  A  W  F  L  Q  Y  R  Q  H  *  Q  G  F  N  E  H  R  *  L  K  Y  *  Y  I  W  R  L  W  G  L  L  E  *  P  L  E  E  F  I  *  F  *  H  I  L  I  L  I  F  S  F  P  S  V  L  E  A  F  T  P  C  *  F  G  P  L  C  F  C  S  *  R  D  Q  L  Q  R  Q  P  R  N  S  W  G  W  S  G  F  L  D  R  V  T  *  S  *  Q  L  Y  W  R  S  R  N  Q  R  K  D  T  T  S  L  S  Q  P  N  *  T  L  *  K  S  S  *  *  S  *  *  *  *  Y  R  L  Q  *  I  R  S  G  *  P  L  *  Q  V  E  I  S  C  N  L  *  R  S  M  R  G  K  G  A  F  W  T  S  V  L  *  S  I  F  V  F  *  R  E  G  N  K  R  I  W  E  A  Q  G  V  *  G  V  V  V  C  I  I  Y  I  G  Y  *  L  C  S  K  Q  Q  G  G  H  N  F  V  T   : Q  I  I  N  I  K  *  *  I  V  N  K  I  S  K  I  Y  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21458" stop="21511"/>
                    <exon start="21623" stop="21835"/>
                    <exon start="22182" stop="22243"/>
                    <exon start="22335" stop="22998"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>990</number_coding_nucleotides>
                  <number_encoded_amino_acids>330</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKVVEAPNVLTVALKRFQSGKFGKLNKTIKFPEFLNLAPYMSGTSDKSPVYQLYGVVVHLDVMNAAFSGHYVCYVRNFQNKWYKVDDSSVKSVELERVLSKGAYMLLYSRCSPRAPRIMRSLKSRSHTRSPWDSSHGDSTSKTCKGCSYPSHTSVRPIRSIFEEDSSSEQSSFFSELGSCSTDSTNRDSTSTDDLNIDIFGDSGVCWNSLWRSSSDSDTSSSSSSPSPLYSRHSPLADLDRYASAREETSCSVNPETAGDGQGFWTGLRDRNSYTGVPETSGRTPPLCPNPTKHCRKVVSSHSSSNTDSSRLGRVNPCDKSKSPVTCRDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="34787" PGL_stop="36172"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34787" e_stop="35254"/>
            <exon e_start="35359" e_stop="36172"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.993" e_score="0.994"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="34787" e_stop="35254" e_length="468"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.993">
            <gDNA_intron_boundary i_start="35255" i_stop="35358" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.988">
            <gDNA_exon_boundary e_start="35359" e_stop="36172" e_length="814"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34787" stop="35254"/>
              <exon start="35359" stop="35521"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35444" stop="36172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325022" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACACAAACACTATGTTTGGTAAAATTCATCATCACCACCAAAATCAATCTCCTCAATCTTTTCAACACCACCACCACCTTCACCAGCAGCAGCAGCAGCAGCACCACCACAATTTTCAACATCCACCGTTTCAGCTGACGCGAGAATGCCAAACTTCGGAGGAAGCAGACAGTACTGCGAACAGAAACGATACTTTAAACCCTCAACCGGTTAATGCAGTAGCACCGCCGTCGCAGCAGCAGCAACCCGCCGGTAACGACGGTGCTACGATTGAGGTTGTTCGCCGTCCCCGTGGCCGGCCGCCTGGTTCGAAAAACAAACCTAAACCACCTGTTATCATTACTCGCGATGCGGAACCATCTATGAGTCCTTATATACTTGAAATTCCGACTGGTGTTGATATAATCAACTCTGTTACCAAATTCTGTAGAAAACGGAATATGGGTCTTTGTGTTCTTAACGGTTCAG : GTACTGTAACGAATGTAACTCTCCGGCAACCATCAACTACGCCGGTTTCGACGGTTACCTTTCATGGCAGATTCGATATATTGTCGATTTCTGCCACTGTTGTTCAGCCGAATGCGAATATTCCATCGAACAATGGGATAGCAAATGGGTTCACAATTTCATTAGCAGGTCCACAAGGTCAAGTAGTAGGTGGTGGTGTAGTTGGGCCTCTAGTTACGGCCGGGACGGTTTACCTAATCGCTGCAACTTTTAACGGTCCGTCTTTTCATCGGTTACCGGCGGAGGAGGAATTAGCAAGGAATAATTCTGGTGGTGGAAATGAAGATGGATCGTCTCCGCAGCAGCATGCGGAGGTTTCCGGTGGAGGAGATGGTGGACATCCACCGTCAACGACGGCGCCGGAAAGTTGTGGGATGTCGATGTACAGCTGTCATTTGCCGTCGGATGTGATATGGGCTCCTACTGCTAGACAACCACAACCACCGCCTTACTGAAAATTCTTGGGATCTGTGCTCTCTTATGCTGTCAAATTTTCTTCACTAATCTGGGTTTTTGTAATTTGGGACTTTTTTTTTTTTAGTTATTTATTTAGTTGACTTTAGTTTATTTTTGTTATCTTTTATGTTAATCAAAAAACAAATGTACTGTGGATTAGTCCTTTTTTTTTAAAAAAAATTTGTTGTTTATTTTAGTAGGGAAAGAGGAGAATGTTTTGGTACTAATTGAAGTAGTATTATTGTTGAAACACATTAGCCATGAGATATTTTATTGATTACTCAAAATATTATTTCGATCATATTTCTATTTCGTGAAG</gDNA_template>
            <first_frame> T  Q  T  L  C  L  V  K  F  I  I  T  T  K  I  N  L  L  N  L  F  N  T  T  T  T  F  T  S  S  S  S  S  S  T  T  T  I  F  N  I  H  R  F  S  *  R  E  N  A  K  L  R  R  K  Q  T  V  L  R  T  E  T  I  L  *  T  L  N  R  L  M  Q  *  H  R  R  R  S  S  S  N  P  P  V  T  T  V  L  R  L  R  L  F  A  V  P  V  A  G  R  L  V  R  K  T  N  L  N  H  L  L  S  L  L  A  M  R  N  H  L  *  V  L  I  Y  L  K  F  R  L  V  L  I  *  S  T  L  L  P  N  S  V  E  N  G  I  W  V  F  V  F  L  T  V  Q  :  V  L  *  R  M  *  L  S  G  N  H  Q  L  R  R  F  R  R  L  P  F  M  A  D  S  I  Y  C  R  F  L  P  L  L  F  S  R  M  R  I  F  H  R  T  M  G  *  Q  M  G  S  Q  F  H  *  Q  V  H  K  V  K  *  *  V  V  V  *  L  G  L  *  L  R  P  G  R  F  T  *  S  L  Q  L  L  T  V  R  L  F  I  G  Y  R  R  R  R  N  *  Q  G  I  I  L  V  V  E  M  K  M  D  R  L  R  S  S  M  R  R  F  P  V  E  E  M  V  D  I  H  R  Q  R  R  R  R  K  V  V  G  C  R  C  T  A  V  I  C  R  R  M  *  Y  G  L  L  L  L  D  N  H  N  H  R  L  T  E  N  S  W  D  L  C  S  L  M  L  S  N  F  L  H  *  S  G  F  L  *  F  G  T  F  F  F  L  V  I  Y  L  V  D  F  S  L  F  L  L  S  F  M  L  I  K  K  Q  M  Y  C  G  L  V  L  F  F  *  K  K  F  V  V  Y  F  S  R  E  R  G  E  C  F  G  T  N  *  S  S  I  I  V  E  T  H  *  P  *  D  I  L  L  I  T  Q  N  I  I  S  I  I  F  L  F  R  E  </first_frame>
            <second_frame>  H  K  H  Y  V  W  *  N  S  S  S  P  P  K  S  I  S  S  I  F  S  T  P  P  P  P  S  P  A  A  A  A  A  A  P  P  Q  F  S  T  S  T  V  S  A  D  A  R  M  P  N  F  G  G  S  R  Q  Y  C  E  Q  K  R  Y  F  K  P  S  T  G  *  C  S  S  T  A  V  A  A  A  A  T  R  R  *  R  R  C  Y  D  *  G  C  S  P  S  P  W  P  A  A  W  F  E  K  Q  T  *  T  T  C  Y  H  Y  S  R  C  G  T  I  Y  E  S  L  Y  T  *  N  S  D  W  C  *  Y  N  Q  L  C  Y  Q  I  L  *  K  T  E  Y  G  S  L  C  S  *  R  F  R :   Y  C  N  E  C  N  S  P  A  T  I  N  Y  A  G  F  D  G  Y  L  S  W  Q  I  R  Y  I  V  D  F  C  H  C  C  S  A  E  C  E  Y  S  I  E  Q  W  D  S  K  W  V  H  N  F  I  S  R  S  T  R  S  S  S  R  W  W  C  S  W  A  S  S  Y  G  R  D  G  L  P  N  R  C  N  F  *  R  S  V  F  S  S  V  T  G  G  G  G  I  S  K  E  *  F  W  W  W  K  *  R  W  I  V  S  A  A  A  C  G  G  F  R  W  R  R  W  W  T  S  T  V  N  D  G  A  G  K  L  W  D  V  D  V  Q  L  S  F  A  V  G  C  D  M  G  S  Y  C  *  T  T  T  T  T  A  L  L  K  I  L  G  I  C  A  L  L  C  C  Q  I  F  F  T  N  L  G  F  C  N  L  G  L  F  F  F  *  L  F  I  *  L  T  L  V  Y  F  C  Y  L  L  C  *  S  K  N  K  C  T  V  D  *  S  F  F  F  K  K  N  L  L  F  I  L  V  G  K  E  E  N  V  L  V  L  I  E  V  V  L  L  L  K  H  I  S  H  E  I  F  Y  *  L  L  K  I  L  F  R  S  Y  F  Y  F  V  K </second_frame>
            <third_frame>   T  N  T  M  F  G  K  I  H  H  H  H  Q  N  Q  S  P  Q  S  F  Q  H  H  H  H  L  H  Q  Q  Q  Q  Q  Q  H  H  H  N  F  Q  H  P  P  F  Q  L  T  R  E  C  Q  T  S  E  E  A  D  S  T  A  N  R  N  D  T  L  N  P  Q  P  V  N  A  V  A  P  P  S  Q  Q  Q  Q  P  A  G  N  D  G  A  T  I  E  V  V  R  R  P  R  G  R  P  P  G  S  K  N  K  P  K  P  P  V  I  I  T  R  D  A  E  P  S  M  S  P  Y  I  L  E  I  P  T  G  V  D  I  I  N  S  V  T  K  F  C  R  K  R  N  M  G  L  C  V  L  N  G  S   : G  T  V  T  N  V  T  L  R  Q  P  S  T  T  P  V  S  T  V  T  F  H  G  R  F  D  I  L  S  I  S  A  T  V  V  Q  P  N  A  N  I  P  S  N  N  G  I  A  N  G  F  T  I  S  L  A  G  P  Q  G  Q  V  V  G  G  G  V  V  G  P  L  V  T  A  G  T  V  Y  L  I  A  A  T  F  N  G  P  S  F  H  R  L  P  A  E  E  E  L  A  R  N  N  S  G  G  G  N  E  D  G  S  S  P  Q  Q  H  A  E  V  S  G  G  G  D  G  G  H  P  P  S  T  T  A  P  E  S  C  G  M  S  M  Y  S  C  H  L  P  S  D  V  I  W  A  P  T  A  R  Q  P  Q  P  P  P  Y  *  K  F  L  G  S  V  L  S  Y  A  V  K  F  S  S  L  I  W  V  F  V  I  W  D  F  F  F  F  S  Y  L  F  S  *  L  *  F  I  F  V  I  F  Y  V  N  Q  K  T  N  V  L  W  I  S  P  F  F  L  K  K  I  C  C  L  F  *  *  G  K  R  R  M  F  W  Y  *  L  K  *  Y  Y  C  *  N  T  L  A  M  R  Y  F  I  D  Y  S  K  Y  Y  F  D  H  I  S  I  S  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34789" stop="35254"/>
                    <exon start="35359" stop="35852"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNTMFGKIHHHHQNQSPQSFQHHHHLHQQQQQQHHHNFQHPPFQLTRECQTSEEADSTANRNDTLNPQPVNAVAPPSQQQQPAGNDGATIEVVRRPRGRPPGSKNKPKPPVIITRDAEPSMSPYILEIPTGVDIINSVTKFCRKRNMGLCVLNGSGTVTNVTLRQPSTTPVSTVTFHGRFDILSISATVVQPNANIPSNNGIANGFTISLAGPQGQVVGGGVVGPLVTAGTVYLIAATFNGPSFHRLPAEEELARNNSGGGNEDGSSPQQHAEVSGGGDGGHPPSTTAPESCGMSMYSCHLPSDVIWAPTARQPQPPPY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="48511" PGL_stop="39116"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48511" e_stop="48361"/>
            <exon e_start="47334" e_stop="47240"/>
            <exon e_start="45672" e_stop="45469"/>
            <exon e_start="44773" e_stop="44657"/>
            <exon e_start="44527" e_stop="44399"/>
            <exon e_start="43978" e_stop="43849"/>
            <exon e_start="43628" e_stop="43525"/>
            <exon e_start="43414" e_stop="43310"/>
            <exon e_start="43121" e_stop="43103"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.881" e_score="0.993"/>
          <exon-intron don_prob="0.988" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.529" acc_prob="0.993" e_score="0.995"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.632" acc_prob="0.893" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.946" e_score="0.985"/>
          <exon-intron don_prob="0.901" acc_prob="0.972" e_score="0.990"/>
          <exon-intron don_prob="0.997" acc_prob="0.993" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="48511" e_stop="48361" e_length="151"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.881">
            <gDNA_intron_boundary i_start="48360" i_stop="47335" i_length="1026"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="47334" e_stop="47240" e_length="95"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.995">
            <gDNA_intron_boundary i_start="47239" i_stop="45673" i_length="1567"/>
          </intron>
          <exon e_serial="3" e_score="0.995">
            <gDNA_exon_boundary e_start="45672" e_stop="45469" e_length="204"/>
          </exon>
          <intron i_serial="3" don_prob="0.529" acc_prob="0.993">
            <gDNA_intron_boundary i_start="45468" i_stop="44774" i_length="695"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44773" e_stop="44657" e_length="117"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="44656" i_stop="44528" i_length="129"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44527" e_stop="44399" e_length="129"/>
          </exon>
          <intron i_serial="5" don_prob="0.632" acc_prob="0.893">
            <gDNA_intron_boundary i_start="44398" i_stop="43979" i_length="420"/>
          </intron>
          <exon e_serial="6" e_score="0.985">
            <gDNA_exon_boundary e_start="43978" e_stop="43849" e_length="130"/>
          </exon>
          <intron i_serial="6" don_prob="0.945" acc_prob="0.946">
            <gDNA_intron_boundary i_start="43848" i_stop="43629" i_length="220"/>
          </intron>
          <exon e_serial="7" e_score="0.990">
            <gDNA_exon_boundary e_start="43628" e_stop="43525" e_length="104"/>
          </exon>
          <intron i_serial="7" don_prob="0.901" acc_prob="0.972">
            <gDNA_intron_boundary i_start="43524" i_stop="43415" i_length="110"/>
          </intron>
          <exon e_serial="8" e_score="0.990">
            <gDNA_exon_boundary e_start="43414" e_stop="43310" e_length="105"/>
          </exon>
          <intron i_serial="8" don_prob="0.997" acc_prob="0.993">
            <gDNA_intron_boundary i_start="43309" i_stop="43122" i_length="188"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="43121" e_stop="43103" e_length="19"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48511" stop="48361"/>
              <exon start="47334" stop="47240"/>
              <exon start="45672" stop="45469"/>
              <exon start="44773" stop="44657"/>
              <exon start="44527" stop="44399"/>
              <exon start="43978" stop="43849"/>
              <exon start="43628" stop="43525"/>
              <exon start="43414" stop="43310"/>
              <exon start="43121" stop="43103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48435" stop="48361"/>
              <exon start="47334" stop="47240"/>
              <exon start="45672" stop="45469"/>
              <exon start="44773" stop="44682"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336999" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAGAATGAAAAAAATCAGAGATAAAACGTGAGAATAAATTAAGACAAGTATCAGGAGAAGCGAAAAACTCCATCTCAGCGAAATAGCAACCATGATTTCTCAGTTCTTTGTGCTTTCTCAGAGAGGCGACAGCATCGTCTTCCGCGACT : ATCGGGGTGATGTACCAAAAGGAAGTGCAGAGATCTTCTTCCGGAAAGTGAAGTTTTGGAAAGAAGATGGCGGAGAGGAAGCACCTCCTGTATTT : AATGTGGATGGTGTGAACTACTTCCATGTGAAGGTAGTTGGTCTGCTTTTTGTTGCGACATCTAGGACAAATTTGTCGCCTTCTCTAGTATTGGAGCTTCTCCAGAGGATTGCACGTGTAATCAAAGATTACCTTGGTGTTCTAAATGAAGACTCATTGCGGAAAAATTTTGTGCTGGTGTATGAGCTTCTTGATGAAGTTGTT : GATTTTGGTTATGTGCAAACAACGTCGACAGAAATCTTAAAGTCTTACATATTTAATGAGCCAATTATGATTGACGCTGGCCGCTTGCCACCCCTTGGTCCTGCAGCCATGTTCATG : CAAGGATCCAAAAGAATGCCAGGGACAGCAATTACTAAATCTGTTGTGGCAAATGAACCTGGGGGGAGAAAGAGGGAGGAAATTTTCGTGGATATAATTGAAAAAATCAGCATTACTTTCAGCTCAAGT : GGATATATATTGACTTCTGAAATTGATGGGACCATTCAAATGAAGAGTTATCTTACTGGTAATCCAGAAATCAGATTAGCTCTCAATGAGGATCTGGGCATTGGAAGGGCCGGTGGGAGATCAGCTTACG : ATTATGGAGGTTCGGCTGGGTCTGGAGCAGTAGTACTGGATGATTGCAATTTCCATGAATCGGTGCAACTTGATAGTTTTGATGTGGACAGGACCTTGACTCTG : GTTCCTCCGGATGGTGAATTTCCTGTCATGAATTACCGGATAACCCAGGAATTCAAGCCTCCCTTTCGTATTAATACTTTGATTGAAGAAGCTGGATCACTTAAG : GCTGAAGTTATCTTGAAAA</gDNA_template>
            <first_frame> E  R  M  K  K  I  R  D  K  T  *  E  *  I  K  T  S  I  R  R  S  E  K  L  H  L  S  E  I  A  T  M  I  S  Q  F  F  V  L  S  Q  R  G  D  S  I  V  F  R  D   : Y  R  G  D  V  P  K  G  S  A  E  I  F  F  R  K  V  K  F  W  K  E  D  G  G  E  E  A  P  P  V  F  :  N  V  D  G  V  N  Y  F  H  V  K  V  V  G  L  L  F  V  A  T  S  R  T  N  L  S  P  S  L  V  L  E  L  L  Q  R  I  A  R  V  I  K  D  Y  L  G  V  L  N  E  D  S  L  R  K  N  F  V  L  V  Y  E  L  L  D  E  V  V  :  D  F  G  Y  V  Q  T  T  S  T  E  I  L  K  S  Y  I  F  N  E  P  I  M  I  D  A  G  R  L  P  P  L  G  P  A  A  M  F  M  :  Q  G  S  K  R  M  P  G  T  A  I  T  K  S  V  V  A  N  E  P  G  G  R  K  R  E  E  I  F  V  D  I  I  E  K  I  S  I  T  F  S  S  S  :  G  Y  I  L  T  S  E  I  D  G  T  I  Q  M  K  S  Y  L  T  G  N  P  E  I  R  L  A  L  N  E  D  L  G  I  G  R  A  G  G  R  S  A  Y   : D  Y  G  G  S  A  G  S  G  A  V  V  L  D  D  C  N  F  H  E  S  V  Q  L  D  S  F  D  V  D  R  T  L  T  L  :  V  P  P  D  G  E  F  P  V  M  N  Y  R  I  T  Q  E  F  K  P  P  F  R  I  N  T  L  I  E  E  A  G  S  L  K  :  A  E  V  I  L  K  </first_frame>
            <second_frame>  K  E  *  K  K  S  E  I  K  R  E  N  K  L  R  Q  V  S  G  E  A  K  N  S  I  S  A  K  *  Q  P  *  F  L  S  S  L  C  F  L  R  E  A  T  A  S  S  S  A  T  :  I  G  V  M  Y  Q  K  E  V  Q  R  S  S  S  G  K  *  S  F  G  K  K  M  A  E  R  K  H  L  L  Y  L :   M  W  M  V  *  T  T  S  M  *  R  *  L  V  C  F  L  L  R  H  L  G  Q  I  C  R  L  L  *  Y  W  S  F  S  R  G  L  H  V  *  S  K  I  T  L  V  F  *  M  K  T  H  C  G  K  I  L  C  W  C  M  S  F  L  M  K  L  L :   I  L  V  M  C  K  Q  R  R  Q  K  S  *  S  L  T  Y  L  M  S  Q  L  *  L  T  L  A  A  C  H  P  L  V  L  Q  P  C  S  C :   K  D  P  K  E  C  Q  G  Q  Q  L  L  N  L  L  W  Q  M  N  L  G  G  E  R  G  R  K  F  S  W  I  *  L  K  K  S  A  L  L  S  A  Q  V :   D  I  Y  *  L  L  K  L  M  G  P  F  K  *  R  V  I  L  L  V  I  Q  K  S  D  *  L  S  M  R  I  W  A  L  E  G  P  V  G  D  Q  L  T  :  I  M  E  V  R  L  G  L  E  Q  *  Y  W  M  I  A  I  S  M  N  R  C  N  L  I  V  L  M  W  T  G  P  *  L  W :   F  L  R  M  V  N  F  L  S  *  I  T  G  *  P  R  N  S  S  L  P  F  V  L  I  L  *  L  K  K  L  D  H  L  R :   L  K  L  S  *  K </second_frame>
            <third_frame>   K  N  E  K  N  Q  R  *  N  V  R  I  N  *  D  K  Y  Q  E  K  R  K  T  P  S  Q  R  N  S  N  H  D  F  S  V  L  C  A  F  S  E  R  R  Q  H  R  L  P  R  L :   S  G  *  C  T  K  R  K  C  R  D  L  L  P  E  S  E  V  L  E  R  R  W  R  R  G  S  T  S  C  I   : *  C  G  W  C  E  L  L  P  C  E  G  S  W  S  A  F  C  C  D  I  *  D  K  F  V  A  F  S  S  I  G  A  S  P  E  D  C  T  C  N  Q  R  L  P  W  C  S  K  *  R  L  I  A  E  K  F  C  A  G  V  *  A  S  *  *  S  C   : *  F  W  L  C  A  N  N  V  D  R  N  L  K  V  L  H  I  *  *  A  N  Y  D  *  R  W  P  L  A  T  P  W  S  C  S  H  V  H   : A  R  I  Q  K  N  A  R  D  S  N  Y  *  I  C  C  G  K  *  T  W  G  E  K  E  G  G  N  F  R  G  Y  N  *  K  N  Q  H  Y  F  Q  L  K   : W  I  Y  I  D  F  *  N  *  W  D  H  S  N  E  E  L  S  Y  W  *  S  R  N  Q  I  S  S  Q  *  G  S  G  H  W  K  G  R  W  E  I  S  L  R :   L  W  R  F  G  W  V  W  S  S  S  T  G  *  L  Q  F  P  *  I  G  A  T  *  *  F  *  C  G  Q  D  L  D  S   : G  S  S  G  W  *  I  S  C  H  E  L  P  D  N  P  G  I  Q  A  S  L  S  Y  *  Y  F  D  *  R  S  W  I  T  *   : G  *  S  Y  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48472" stop="48361"/>
                    <exon start="47334" stop="47240"/>
                    <exon start="45672" stop="45469"/>
                    <exon start="44773" stop="44657"/>
                    <exon start="44527" stop="44399"/>
                    <exon start="43978" stop="43849"/>
                    <exon start="43628" stop="43525"/>
                    <exon start="43414" stop="43310"/>
                    <exon start="43121" stop="43104"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1014</number_coding_nucleotides>
                  <number_encoded_amino_acids>338</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKTSIRRSEKLHLSEIATMISQFFVLSQRGDSIVFRDYRGDVPKGSAEIFFRKVKFWKEDGGEEAPPVFNVDGVNYFHVKVVGLLFVATSRTNLSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVVDFGYVQTTSTEILKSYIFNEPIMIDAGRLPPLGPAAMFMQGSKRMPGTAITKSVVANEPGGRKREEIFVDIIEKISITFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEDLGIGRAGGRSAYDYGGSAGSGAVVLDDCNFHESVQLDSFDVDRTLTLVPPDGEFPVMNYRITQEFKPPFRINTLIEEAGSLKAEVILK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="43199" e_stop="42496"/>
            <exon e_start="42391" e_stop="42331"/>
            <exon e_start="42219" e_stop="42146"/>
            <exon e_start="41432" e_stop="41096"/>
            <exon e_start="39165" e_stop="39116"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.969"/>
          <exon-intron don_prob="0.914" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.738" e_score="0.994"/>
          <exon-only e_score="0.760"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.969">
            <gDNA_exon_boundary e_start="43199" e_stop="42496" e_length="704"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42495" i_stop="42392" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42391" e_stop="42331" e_length="61"/>
          </exon>
          <intron i_serial="2" don_prob="0.914" acc_prob="1.000">
            <gDNA_intron_boundary i_start="42330" i_stop="42220" i_length="111"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="42219" e_stop="42146" e_length="74"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="42145" i_stop="41433" i_length="713"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="41432" e_stop="41096" e_length="337"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.738">
            <gDNA_intron_boundary i_start="41095" i_stop="39166" i_length="1930"/>
          </intron>
          <exon e_serial="5" e_score="0.760">
            <gDNA_exon_boundary e_start="39165" e_stop="39116" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43199" stop="42496"/>
              <exon start="42391" stop="42331"/>
              <exon start="42219" stop="42146"/>
              <exon start="41432" stop="41096"/>
              <exon start="39165" stop="39116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42391" stop="42331"/>
              <exon start="42219" stop="42146"/>
              <exon start="41432" stop="41097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321996" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTGTAACTTCTTCTTTCTTTTCATATTGTAGTTTTACAATTATGTTGATAACTCAGACTTCTTCTCCTCTATTAGGCTGAAGTTATCTTGAAAATCCGTGCTGAATTTCCTTCGGACATTACTGCAAATACAATCTTGGTACAAATGCCGCTGCCTACATATACAAGCAGGTAGTCTTTACTTCTACTTCTGCTCCAGAGCACATGCATGGATTTTACCTTTTCTTTTCCTGGCATTTTTTTGTGGTATTCTCGTCATCAACTAGGCACTCTGGTACTTTCTAACTAATCGTGCTTTTTGAGGGAGAAAGATAATGTGAAAGTTTCTGTCTGAGTTATTGCCTGTTTGTGTGAGAGAAAGTGGACATCTATTTATTTATTATGAAGCAATTCGGTTCTGATGTGACTCTGTACTTCTCTTTTAGCAATTTGAATTGAAGCAATGATTAACAGAAACAACTCTCCATTCTTTGCAATCTTTTATGGTTGATGAAGTATTTCTGACTCTTAATTTATCCTGCGAAGTTCATTGCTTTCATATTTTTGGAGTATTTATTATGTTGAAGGTGCACCAAAGTGGTAACTGATTTTGTCTACCCTCACTAATTTTGTAGAGTAAGCTTTGAGTTGGAACCTGGAACAGTTGGCCAAACAACTGATTTTAAGGAATCCAATAAGAGGCTTGAGTGGAATTTGAAGAAG : GTTGTCGGTGGATCAGACCATACATTACGTGCCAAGCTAACATTTTCACAAGAGTCACATG : GAAATATCACCAAGGAAGCTGGACCAGTGAGCATGACCTTCACAATCCCAATGTACAATCCTTCAAGGCTTCAG : GTGAAATATCTGCAAATTGCAAAGAAGTCAAAGACATATAATCCTTATCGGTGGGTGAGATATGTGACTCAGGCCAATTCATATGTTGCTCGTATATGATGGCTGTTGAGACCTTTTCCAGCATTACCCTCCTCGGTTTCTTCTTCTCTTTTTCACTTCTTCCTAAACATCTTTTGCCCACTCCCTGTTGAGGTGTCTTGAGTTCTAAATTGTCTTTTCTAACTCTGGTTTTGGGCTTTCAATGTTTGTACTATATTGTCTAGATAATGATGGAGGGCTCTTTGGTGATTCTCATTTTAAAAAATTGTGCAACTAATGGAAAATTTTGCTATTTAAA : AAAAAGGGATAAGAATCCACAAAGAGAAAAAAAAAAAAAAAAAAAAAAAG</gDNA_template>
            <first_frame> F  L  *  L  L  L  S  F  H  I  V  V  L  Q  L  C  *  *  L  R  L  L  L  L  Y  *  A  E  V  I  L  K  I  R  A  E  F  P  S  D  I  T  A  N  T  I  L  V  Q  M  P  L  P  T  Y  T  S  R  *  S  L  L  L  L  L  L  Q  S  T  C  M  D  F  T  F  S  F  P  G  I  F  L  W  Y  S  R  H  Q  L  G  T  L  V  L  S  N  *  S  C  F  L  R  E  K  D  N  V  K  V  S  V  *  V  I  A  C  L  C  E  R  K  W  T  S  I  Y  L  L  *  S  N  S  V  L  M  *  L  C  T  S  L  L  A  I  *  I  E  A  M  I  N  R  N  N  S  P  F  F  A  I  F  Y  G  *  *  S  I  S  D  S  *  F  I  L  R  S  S  L  L  S  Y  F  W  S  I  Y  Y  V  E  G  A  P  K  W  *  L  I  L  S  T  L  T  N  F  V  E  *  A  L  S  W  N  L  E  Q  L  A  K  Q  L  I  L  R  N  P  I  R  G  L  S  G  I  *  R  R :   L  S  V  D  Q  T  I  H  Y  V  P  S  *  H  F  H  K  S  H  M  :  E  I  S  P  R  K  L  D  Q  *  A  *  P  S  Q  S  Q  C  T  I  L  Q  G  F  R :   *  N  I  C  K  L  Q  R  S  Q  R  H  I  I  L  I  G  G  *  D  M  *  L  R  P  I  H  M  L  L  V  Y  D  G  C  *  D  L  F  Q  H  Y  P  P  R  F  L  L  L  F  F  T  S  S  *  T  S  F  A  H  S  L  L  R  C  L  E  F  *  I  V  F  S  N  S  G  F  G  L  S  M  F  V  L  Y  C  L  D  N  D  G  G  L  F  G  D  S  H  F  K  K  L  C  N  *  W  K  I  L  L  F  K  :  K  K  G  *  E  S  T  K  R  K  K  K  K  K  K  K   </first_frame>
            <second_frame>  F  C  N  F  F  F  L  F  I  L  *  F  Y  N  Y  V  D  N  S  D  F  F  S  S  I  R  L  K  L  S  *  K  S  V  L  N  F  L  R  T  L  L  Q  I  Q  S  W  Y  K  C  R  C  L  H  I  Q  A  G  S  L  Y  F  Y  F  C  S  R  A  H  A  W  I  L  P  F  L  F  L  A  F  F  C  G  I  L  V  I  N  *  A  L  W  Y  F  L  T  N  R  A  F  *  G  R  K  I  M  *  K  F  L  S  E  L  L  P  V  C  V  R  E  S  G  H  L  F  I  Y  Y  E  A  I  R  F  *  C  D  S  V  L  L  F  *  Q  F  E  L  K  Q  *  L  T  E  T  T  L  H  S  L  Q  S  F  M  V  D  E  V  F  L  T  L  N  L  S  C  E  V  H  C  F  H  I  F  G  V  F  I  M  L  K  V  H  Q  S  G  N  *  F  C  L  P  S  L  I  L  *  S  K  L  *  V  G  T  W  N  S  W  P  N  N  *  F  *  G  I  Q  *  E  A  *  V  E  F  E  E   : G  C  R  W  I  R  P  Y  I  T  C  Q  A  N  I  F  T  R  V  T  W :   K  Y  H  Q  G  S  W  T  S  E  H  D  L  H  N  P  N  V  Q  S  F  K  A  S   : G  E  I  S  A  N  C  K  E  V  K  D  I  *  S  L  S  V  G  E  I  C  D  S  G  Q  F  I  C  C  S  Y  M  M  A  V  E  T  F  S  S  I  T  L  L  G  F  F  F  S  F  S  L  L  P  K  H  L  L  P  T  P  C  *  G  V  L  S  S  K  L  S  F  L  T  L  V  L  G  F  Q  C  L  Y  Y  I  V  *  I  M  M  E  G  S  L  V  I  L  I  L  K  N  C  A  T  N  G  K  F  C  Y  L  K :   K  R  D  K  N  P  Q  R  E  K  K  K  K  K  K  K  </second_frame>
            <third_frame>   S  V  T  S  S  F  F  S  Y  C  S  F  T  I  M  L  I  T  Q  T  S  S  P  L  L  G  *  S  Y  L  E  N  P  C  *  I  S  F  G  H  Y  C  K  Y  N  L  G  T  N  A  A  A  Y  I  Y  K  Q  V  V  F  T  S  T  S  A  P  E  H  M  H  G  F  Y  L  F  F  S  W  H  F  F  V  V  F  S  S  S  T  R  H  S  G  T  F  *  L  I  V  L  F  E  G  E  R  *  C  E  S  F  C  L  S  Y  C  L  F  V  *  E  K  V  D  I  Y  L  F  I  M  K  Q  F  G  S  D  V  T  L  Y  F  S  F  S  N  L  N  *  S  N  D  *  Q  K  Q  L  S  I  L  C  N  L  L  W  L  M  K  Y  F  *  L  L  I  Y  P  A  K  F  I  A  F  I  F  L  E  Y  L  L  C  *  R  C  T  K  V  V  T  D  F  V  Y  P  H  *  F  C  R  V  S  F  E  L  E  P  G  T  V  G  Q  T  T  D  F  K  E  S  N  K  R  L  E  W  N  L  K  K  :  V  V  G  G  S  D  H  T  L  R  A  K  L  T  F  S  Q  E  S  H   : G  N  I  T  K  E  A  G  P  V  S  M  T  F  T  I  P  M  Y  N  P  S  R  L  Q  :  V  K  Y  L  Q  I  A  K  K  S  K  T  Y  N  P  Y  R  W  V  R  Y  V  T  Q  A  N  S  Y  V  A  R  I  *  W  L  L  R  P  F  P  A  L  P  S  S  V  S  S  S  L  F  H  F  F  L  N  I  F  C  P  L  P  V  E  V  S  *  V  L  N  C  L  F  *  L  W  F  W  A  F  N  V  C  T  I  L  S  R  *  *  W  R  A  L  W  *  F  S  F  *  K  I  V  Q  L  M  E  N  F  A  I  *   : K  K  G  I  R  I  H  K  E  K  K  K  K  K  K  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42591" stop="42496"/>
                    <exon start="42391" stop="42331"/>
                    <exon start="42219" stop="42146"/>
                    <exon start="41432" stop="41334"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCRVSFELEPGTVGQTTDFKESNKRLEWNLKKVVGGSDHTLRAKLTFSQESHGNITKEAGPVSMTFTIPMYNPSRLQVKYLQIAKKSKTYNPYRWVRYVTQANSYVARI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="41745" PGL_stop="42545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="41745" e_stop="42545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="41745" e_stop="42545" e_length="801"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="41745" stop="42545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321994" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCTCGAACAAAATTATTTGATGTGGCTACTTCACACCTCTTTCCAGTTCAATCCCTTCAAAATGGGAACATACATCTGCTGAAGAGATGAGGTAGCAAAATTGATGAAACAACTAGTTTGAGGAAATTTTCATGCAGCTCCACCTCTGTGGTCTTTCCAGTTGGCTGTTGTCTAAAAGGATCTCATTCTAACAATTACTCGTCCAGAAAAATTATCAATGATTCATTGCATTTAATTTATCTTTTAGAATGCAGGAGGAGAGAAAAAGATCAAACAGAAATTCTTCGGAAAACCAAAACAAAATTCAAATTGATACACAAACAAATTTTAACATCCCTACTAGGTGAGATGCCATTTTTCTTGTTCTTATGACGAGGAATCTAACTTCACAACTGTTCACCTGAAGCCTTGAAGGATTGTACATTGGGATTGTGAAGGTCATGCTCACTGGTCCAGCTTCCTTGGTGATATTTCCTGTATTAGGGACAAAGCAGAATTACAATTACCAAGTCATATTGTATCTAAGATAACAGAACTTCAGGATACATTGCTGGGACAACAAGTGAGATTGAATATTCTTCATACCATGTGACTCTTGTGAAAATGTTAGCTTGGCACGTAATGTATGGTCTGATCCACCGACAACCTGTTTCAAATTGCAGATCAGTAATTATTTTAAAGAAGTCTTAGATAACAAGTCTACCTAAAATAGGTAAGAAAAATCGCTTGGAAATGAGATGGATATATTACCTTCTTCAAATTCCACTCAAGCCTCTTATTGGATTCCTTAAAATCAGTTG</gDNA_template>
            <first_frame> P  S  N  K  I  I  *  C  G  Y  F  T  P  L  S  S  S  I  P  S  K  W  E  H  T  S  A  E  E  M  R  *  Q  N  *  *  N  N  *  F  E  E  I  F  M  Q  L  H  L  C  G  L  S  S  W  L  L  S  K  R  I  S  F  *  Q  L  L  V  Q  K  N  Y  Q  *  F  I  A  F  N  L  S  F  R  M  Q  E  E  R  K  R  S  N  R  N  S  S  E  N  Q  N  K  I  Q  I  D  T  Q  T  N  F  N  I  P  T  R  *  D  A  I  F  L  V  L  M  T  R  N  L  T  S  Q  L  F  T  *  S  L  E  G  L  Y  I  G  I  V  K  V  M  L  T  G  P  A  S  L  V  I  F  P  V  L  G  T  K  Q  N  Y  N  Y  Q  V  I  L  Y  L  R  *  Q  N  F  R  I  H  C  W  D  N  K  *  D  *  I  F  F  I  P  C  D  S  C  E  N  V  S  L  A  R  N  V  W  S  D  P  P  T  T  C  F  K  L  Q  I  S  N  Y  F  K  E  V  L  D  N  K  S  T  *  N  R  *  E  K  S  L  G  N  E  M  D  I  L  P  S  S  N  S  T  Q  A  S  Y  W  I  P  *  N  Q  L </first_frame>
            <second_frame>  P  R  T  K  L  F  D  V  A  T  S  H  L  F  P  V  Q  S  L  Q  N  G  N  I  H  L  L  K  R  *  G  S  K  I  D  E  T  T  S  L  R  K  F  S  C  S  S  T  S  V  V  F  P  V  G  C  C  L  K  G  S  H  S  N  N  Y  S  S  R  K  I  I  N  D  S  L  H  L  I  Y  L  L  E  C  R  R  R  E  K  D  Q  T  E  I  L  R  K  T  K  T  K  F  K  L  I  H  K  Q  I  L  T  S  L  L  G  E  M  P  F  F  L  F  L  *  R  G  I  *  L  H  N  C  S  P  E  A  L  K  D  C  T  L  G  L  *  R  S  C  S  L  V  Q  L  P  W  *  Y  F  L  Y  *  G  Q  S  R  I  T  I  T  K  S  Y  C  I  *  D  N  R  T  S  G  Y  I  A  G  T  T  S  E  I  E  Y  S  S  Y  H  V  T  L  V  K  M  L  A  W  H  V  M  Y  G  L  I  H  R  Q  P  V  S  N  C  R  S  V  I  I  L  K  K  S  *  I  T  S  L  P  K  I  G  K  K  N  R  L  E  M  R  W  I  Y  Y  L  L  Q  I  P  L  K  P  L  I  G  F  L  K  I  S   </second_frame>
            <third_frame>   L  E  Q  N  Y  L  M  W  L  L  H  T  S  F  Q  F  N  P  F  K  M  G  T  Y  I  C  *  R  D  E  V  A  K  L  M  K  Q  L  V  *  G  N  F  H  A  A  P  P  L  W  S  F  Q  L  A  V  V  *  K  D  L  I  L  T  I  T  R  P  E  K  L  S  M  I  H  C  I  *  F  I  F  *  N  A  G  G  E  K  K  I  K  Q  K  F  F  G  K  P  K  Q  N  S  N  *  Y  T  N  K  F  *  H  P  Y  *  V  R  C  H  F  S  C  S  Y  D  E  E  S  N  F  T  T  V  H  L  K  P  *  R  I  V  H  W  D  C  E  G  H  A  H  W  S  S  F  L  G  D  I  S  C  I  R  D  K  A  E  L  Q  L  P  S  H  I  V  S  K  I  T  E  L  Q  D  T  L  L  G  Q  Q  V  R  L  N  I  L  H  T  M  *  L  L  *  K  C  *  L  G  T  *  C  M  V  *  S  T  D  N  L  F  Q  I  A  D  Q  *  L  F  *  R  S  L  R  *  Q  V  Y  L  K  *  V  R  K  I  A  W  K  *  D  G  Y  I  T  F  F  K  F  H  S  S  L  L  L  D  S  L  K  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="41836" stop="42117"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSKIDETTSLRKFSCSSTSVVFPVGCCLKGSHSNNYSSRKIINDSLHLIYLLECRRREKDQTEILRKTKTKFKLIHKQILTSLLGEMPFFLFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="60623" PGL_stop="56160"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60623" e_stop="60553"/>
            <exon e_start="58822" e_stop="58672"/>
            <exon e_start="58392" e_stop="58282"/>
            <exon e_start="58016" e_stop="57906"/>
            <exon e_start="57667" e_stop="57557"/>
            <exon e_start="56743" e_stop="56160"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.952" acc_prob="0.993" e_score="0.944"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="0.993"/>
          <exon-intron don_prob="0.983" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.999" e_score="0.964"/>
          <exon-intron don_prob="0.989" acc_prob="0.998" e_score="0.991"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="60623" e_stop="60553" e_length="71"/>
          </exon>
          <intron i_serial="1" don_prob="0.952" acc_prob="0.993">
            <gDNA_intron_boundary i_start="60552" i_stop="58823" i_length="1730"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="58822" e_stop="58672" e_length="151"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58671" i_stop="58393" i_length="279"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58392" e_stop="58282" e_length="111"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.999">
            <gDNA_intron_boundary i_start="58281" i_stop="58017" i_length="265"/>
          </intron>
          <exon e_serial="4" e_score="0.964">
            <gDNA_exon_boundary e_start="58016" e_stop="57906" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.930" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57905" i_stop="57668" i_length="238"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="57667" e_stop="57557" e_length="111"/>
          </exon>
          <intron i_serial="5" don_prob="0.989" acc_prob="0.998">
            <gDNA_intron_boundary i_start="57556" i_stop="56744" i_length="813"/>
          </intron>
          <exon e_serial="6" e_score="0.978">
            <gDNA_exon_boundary e_start="56743" e_stop="56160" e_length="584"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60623" stop="60553"/>
              <exon start="58822" stop="58672"/>
              <exon start="58392" stop="58282"/>
              <exon start="58016" stop="57906"/>
              <exon start="57667" stop="57557"/>
              <exon start="56743" stop="56160"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U332361" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAGGTTGTTAATTGAAGGAGAGTTATTGAGAATAAAAAAAAAAGTAGCTGGTATAAGATAGCTGCAAACA : CCAAGGTCCTTTTCCGGGAAAAGCAGATGCAAAGCAGGCAGAAGGGATGATAGAAGTAGAGTTAGGCTCAGAAAAACACAAGGAAGAAGAAAGCCAAAAAATAAAGCGAGACAAAATGACGAACACACCCAAGTCAAGCAGCAAAAAATCT : GATTCTGGACCTTCGTCGAGCAAATCACCAGAAAAGCACAAGGAAGAGGAAAGCCGGAAAAAAAAGCGAGACAAAATGCCAACCACACCCAAGTCAAGCAGCAAAAATTCT : GATTCTGGAAATTCTTCGAGCAAATCACCAGATAAACATAAGGAAGAGGAAAGCCGGGAAACAAAGCGAGACAAAATGCCGGACACACCCAAATCAAGCAGCAAAGAATCT : GAGTCTGGACATTCGTCGAGCAAATCACCAGAAAAGCATGAGGAAGAGGAAAGCCGAAAAAGAAAGCGAGACAAAATGCCGAACAAACCCAAATCAAGCAGCAAAGAATCT : GTGGCAGCTTCAGCTGGAAAACATACACTGAGCGCACGCCAAGTAAAAGTAATGCGCGAGCTTGGTTTAATGGCTCCGTCTGGGTCTCCATTTGATAAAAGGAAACATGTTGTTGCTCCTCCAAAACTCCCAATTATTCCCAAGGACCGTGTTTCTACGCCTAAAAGGCTTCCATCCAATCCTAAGGAACGTCTTCCCGCAATTGATAGAATAGTTGTTTGTGGTCTAGCTGCTGCTGGATTTGTCAATCGTGTGATGAAGTAGCTTTTGTTTCTCAACTGTTTGATCCTCAGTAACTTAGAGTTTGATGACAACCTAAACTACCAATATAGTGCTGAAGCTGTCAGCAGTGTTATACGAGAGGGGATGTAGGATTACAAGCTAGTGGGCGCGGAGTACTGTGCACCCACACTTGTTTTTGTAACAATGAGAATAAGTTATAAACTTAGCTTTTAGTGATACAGTTTAGAACATCTCAATTATAGGTATACCTCAAACAAAGAAGCGGGTACAGGTACACCCGCATCCCTCTACCCCATGTCTATGGTGATGTTGTGATATCAACTGTAGAAATGCACATTATG</gDNA_template>
            <first_frame> T  G  C  *  L  K  E  S  Y  *  E  *  K  K  K  *  L  V  *  D  S  C  K  H :   Q  G  P  F  P  G  K  A  D  A  K  Q  A  E  G  M  I  E  V  E  L  G  S  E  K  H  K  E  E  E  S  Q  K  I  K  R  D  K  M  T  N  T  P  K  S  S  S  K  K  S  :  D  S  G  P  S  S  S  K  S  P  E  K  H  K  E  E  E  S  R  K  K  K  R  D  K  M  P  T  T  P  K  S  S  S  K  N  S  :  D  S  G  N  S  S  S  K  S  P  D  K  H  K  E  E  E  S  R  E  T  K  R  D  K  M  P  D  T  P  K  S  S  S  K  E  S  :  E  S  G  H  S  S  S  K  S  P  E  K  H  E  E  E  E  S  R  K  R  K  R  D  K  M  P  N  K  P  K  S  S  S  K  E  S  :  V  A  A  S  A  G  K  H  T  L  S  A  R  Q  V  K  V  M  R  E  L  G  L  M  A  P  S  G  S  P  F  D  K  R  K  H  V  V  A  P  P  K  L  P  I  I  P  K  D  R  V  S  T  P  K  R  L  P  S  N  P  K  E  R  L  P  A  I  D  R  I  V  V  C  G  L  A  A  A  G  F  V  N  R  V  M  K  *  L  L  F  L  N  C  L  I  L  S  N  L  E  F  D  D  N  L  N  Y  Q  Y  S  A  E  A  V  S  S  V  I  R  E  G  M  *  D  Y  K  L  V  G  A  E  Y  C  A  P  T  L  V  F  V  T  M  R  I  S  Y  K  L  S  F  *  *  Y  S  L  E  H  L  N  Y  R  Y  T  S  N  K  E  A  G  T  G  T  P  A  S  L  Y  P  M  S  M  V  M  L  *  Y  Q  L  *  K  C  T  L   </first_frame>
            <second_frame>  Q  V  V  N  *  R  R  V  I  E  N  K  K  K  S  S  W  Y  K  I  A  A  N   : T  K  V  L  F  R  E  K  Q  M  Q  S  R  Q  K  G  *  *  K  *  S  *  A  Q  K  N  T  R  K  K  K  A  K  K  *  S  E  T  K  *  R  T  H  P  S  Q  A  A  K  N  L :   I  L  D  L  R  R  A  N  H  Q  K  S  T  R  K  R  K  A  G  K  K  S  E  T  K  C  Q  P  H  P  S  Q  A  A  K  I  L :   I  L  E  I  L  R  A  N  H  Q  I  N  I  R  K  R  K  A  G  K  Q  S  E  T  K  C  R  T  H  P  N  Q  A  A  K  N  L :   S  L  D  I  R  R  A  N  H  Q  K  S  M  R  K  R  K  A  E  K  E  S  E  T  K  C  R  T  N  P  N  Q  A  A  K  N  L :   W  Q  L  Q  L  E  N  I  H  *  A  H  A  K  *  K  *  C  A  S  L  V  *  W  L  R  L  G  L  H  L  I  K  G  N  M  L  L  L  L  Q  N  S  Q  L  F  P  R  T  V  F  L  R  L  K  G  F  H  P  I  L  R  N  V  F  P  Q  L  I  E  *  L  F  V  V  *  L  L  L  D  L  S  I  V  *  *  S  S  F  C  F  S  T  V  *  S  S  V  T  *  S  L  M  T  T  *  T  T  N  I  V  L  K  L  S  A  V  L  Y  E  R  G  C  R  I  T  S  *  W  A  R  S  T  V  H  P  H  L  F  L  *  Q  *  E  *  V  I  N  L  A  F  S  D  T  V  *  N  I  S  I  I  G  I  P  Q  T  K  K  R  V  Q  V  H  P  H  P  S  T  P  C  L  W  *  C  C  D  I  N  C  R  N  A  H  Y  </second_frame>
            <third_frame>   R  L  L  I  E  G  E  L  L  R  I  K  K  K  V  A  G  I  R  *  L  Q  T  :  P  R  S  F  S  G  K  S  R  C  K  A  G  R  R  D  D  R  S  R  V  R  L  R  K  T  Q  G  R  R  K  P  K  N  K  A  R  Q  N  D  E  H  T  Q  V  K  Q  Q  K  I   : *  F  W  T  F  V  E  Q  I  T  R  K  A  Q  G  R  G  K  P  E  K  K  A  R  Q  N  A  N  H  T  Q  V  K  Q  Q  K  F   : *  F  W  K  F  F  E  Q  I  T  R  *  T  *  G  R  G  K  P  G  N  K  A  R  Q  N  A  G  H  T  Q  I  K  Q  Q  R  I   : *  V  W  T  F  V  E  Q  I  T  R  K  A  *  G  R  G  K  P  K  K  K  A  R  Q  N  A  E  Q  T  Q  I  K  Q  Q  R  I   : C  G  S  F  S  W  K  T  Y  T  E  R  T  P  S  K  S  N  A  R  A  W  F  N  G  S  V  W  V  S  I  *  *  K  E  T  C  C  C  S  S  K  T  P  N  Y  S  Q  G  P  C  F  Y  A  *  K  A  S  I  Q  S  *  G  T  S  S  R  N  *  *  N  S  C  L  W  S  S  C  C  W  I  C  Q  S  C  D  E  V  A  F  V  S  Q  L  F  D  P  Q  *  L  R  V  *  *  Q  P  K  L  P  I  *  C  *  S  C  Q  Q  C  Y  T  R  G  D  V  G  L  Q  A  S  G  R  G  V  L  C  T  H  T  C  F  C  N  N  E  N  K  L  *  T  *  L  L  V  I  Q  F  R  T  S  Q  L  *  V  Y  L  K  Q  R  S  G  Y  R  Y  T  R  I  P  L  P  H  V  Y  G  D  V  V  I  S  T  V  E  M  H  I  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60566" stop="60553"/>
                    <exon start="58822" stop="58672"/>
                    <exon start="58392" stop="58282"/>
                    <exon start="58016" stop="57906"/>
                    <exon start="57667" stop="57557"/>
                    <exon start="56743" stop="56480"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSCKHQGPFPGKADAKQAEGMIEVELGSEKHKEEESQKIKRDKMTNTPKSSSKKSDSGPSSSKSPEKHKEEESRKKKRDKMPTTPKSSSKNSDSGNSSSKSPDKHKEEESRETKRDKMPDTPKSSSKESESGHSSSKSPEKHEEEESRKRKRDKMPNKPKSSSKESVAASAGKHTLSARQVKVMRELGLMAPSGSPFDKRKHVVAPPKLPIIPKDRVSTPKRLPSNPKERLPAIDRIVVCGLAAAGFVNRVMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="63044" PGL_stop="66409"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63044" e_stop="63086"/>
            <exon e_start="65899" e_stop="66409"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="63044" e_stop="63086" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="63087" i_stop="65898" i_length="2812"/>
          </intron>
          <exon e_serial="2" e_score="0.969">
            <gDNA_exon_boundary e_start="65899" e_stop="66409" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63044" stop="63086"/>
              <exon start="65899" stop="66409"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345874" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGATTATCACTTGTGACGGCTGTTAAAGGAGATAAAATCAAG : GTAGCAATAATGGTGGAATGGTGGTGGTCTGTTCTTGGAGCTGCAGTACCAGCTGTAATGGCAGGGCAAGCTTTCAGGACGAAAAAAAGGAGAGATGAGGAGGAGAGGTCAAACAGGGCCAGAGGTCGTGAGAAGAACTCCGATGATATCTTTGTTTGTGAAAGAGTGTGTACTTCAAACAGGATGCTGAAGAAGGTTGGTGCATTTTCTAAAGACCCGACACCTGATACTTGTGTTACTGTTTGTGGTGTTTCTGAGCTCGATGCTTGTGCTGATGCGTGTGCTCGGACTGTTTGTGTTAACCAGCACCAAGTACCTAACTGGAATGATATCTGTCTTAAGAGGTGTCAAAGTGAGTGTCTTAGGCTCTCACAATCTTCTGTAGTGTCTTCTTAGCACATTGCTCTCAACATTTTGCTTCCACCATTTCAACAATTCTGGTTCTATTGACAATCTTATCAAGTTGATGAATACTATTTATGGGTATCTATTTCGACTATTCATCGAGATA</gDNA_template>
            <first_frame> L  I  I  T  C  D  G  C  *  R  R  *  N  Q   : G  S  N  N  G  G  M  V  V  V  C  S  W  S  C  S  T  S  C  N  G  R  A  S  F  Q  D  E  K  K  E  R  *  G  G  E  V  K  Q  G  Q  R  S  *  E  E  L  R  *  Y  L  C  L  *  K  S  V  Y  F  K  Q  D  A  E  E  G  W  C  I  F  *  R  P  D  T  *  Y  L  C  Y  C  L  W  C  F  *  A  R  C  L  C  *  C  V  C  S  D  C  L  C  *  P  A  P  S  T  *  L  E  *  Y  L  S  *  E  V  S  K  *  V  S  *  A  L  T  I  F  C  S  V  F  L  A  H  C  S  Q  H  F  A  S  T  I  S  T  I  L  V  L  L  T  I  L  S  S  *  *  I  L  F  M  G  I  Y  F  D  Y  S  S  R   </first_frame>
            <second_frame>  *  L  S  L  V  T  A  V  K  G  D  K  I  K  :  V  A  I  M  V  E  W  W  W  S  V  L  G  A  A  V  P  A  V  M  A  G  Q  A  F  R  T  K  K  R  R  D  E  E  E  R  S  N  R  A  R  G  R  E  K  N  S  D  D  I  F  V  C  E  R  V  C  T  S  N  R  M  L  K  K  V  G  A  F  S  K  D  P  T  P  D  T  C  V  T  V  C  G  V  S  E  L  D  A  C  A  D  A  C  A  R  T  V  C  V  N  Q  H  Q  V  P  N  W  N  D  I  C  L  K  R  C  Q  S  E  C  L  R  L  S  Q  S  S  V  V  S  S  *  H  I  A  L  N  I  L  L  P  P  F  Q  Q  F  W  F  Y  *  Q  S  Y  Q  V  D  E  Y  Y  L  W  V  S  I  S  T  I  H  R  D  </second_frame>
            <third_frame>   D  Y  H  L  *  R  L  L  K  E  I  K  S  R :   *  Q  *  W  W  N  G  G  G  L  F  L  E  L  Q  Y  Q  L  *  W  Q  G  K  L  S  G  R  K  K  G  E  M  R  R  R  G  Q  T  G  P  E  V  V  R  R  T  P  M  I  S  L  F  V  K  E  C  V  L  Q  T  G  C  *  R  R  L  V  H  F  L  K  T  R  H  L  I  L  V  L  L  F  V  V  F  L  S  S  M  L  V  L  M  R  V  L  G  L  F  V  L  T  S  T  K  Y  L  T  G  M  I  S  V  L  R  G  V  K  V  S  V  L  G  S  H  N  L  L  *  C  L  L  S  T  L  L  S  T  F  C  F  H  H  F  N  N  S  G  S  I  D  N  L  I  K  L  M  N  T  I  Y  G  Y  L  F  R  L  F  I  E  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63048" stop="63086"/>
                    <exon start="65899" stop="66294"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>432</number_coding_nucleotides>
                  <number_encoded_amino_acids>144</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSLVTAVKGDKIKVAIMVEWWWSVLGAAVPAVMAGQAFRTKKRRDEEERSNRARGREKNSDDIFVCERVCTSNRMLKKVGAFSKDPTPDTCVTVCGVSELDACADACARTVCVNQHQVPNWNDICLKRCQSECLRLSQSSVVSS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="68255" PGL_stop="65781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68255" e_stop="66660"/>
            <exon e_start="65837" e_stop="65781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.967"/>
          <exon-only e_score="0.632"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="68255" e_stop="66660" e_length="1596"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="66659" i_stop="65838" i_length="822"/>
          </intron>
          <exon e_serial="2" e_score="0.632">
            <gDNA_exon_boundary e_start="65837" e_stop="65781" e_length="57"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68255" stop="66660"/>
              <exon start="65837" stop="65781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCTTTTTACACTCGACAGTTACACCCCACTACCCCCCACCCCCTCTTCCTCTTCCCCAAATCATCCATCAATTTCTCCGTCTCCATTTCAGATCAAACCCCCAAAGCCCTAAAATCCCCAAAAATTGAGGAAAAAATGGAGCATCATACAACTACAAGCAGAGCAGAAGCAGAGAGACTGTTAGGAGTTGCAGAAAAGCTGTTAAGAGATAAAGAATTTGCCCCTTGTAAAGATTTTGCACTTCTTGCTCAAGAAACTGAGCCTTTACTTGAAGGACCTGACCAGATCTTAGCAATTGCTGAAGTTCTTTTAGCTTCTGTTAAACGAATCAACAATCACCATGATTGGTACTCTATTCTTCAAATCCAAGGTCGTACTGAAGATTCAGAGCTTATCAAGAAACAGTATCGTCGTCTTGCTCTTCTTCTTCATCCTGATAAAAACAAATACCCATCTTCAGATACTGCTTTCGGCCTTGTTGCTGATGCTTGGGCTGTTCTTTCAGATCCATCAAAAAAGGGTCTTTATGATAATGAACTTTCCCTTTTTGGTAGAGTTAAATTGACTCCTTCTGCTCGACGAGGAAGACCTAGAGGGAGTTATAATAAGCAGAAGAAAGGAGATGCGAAGTTACCTGTGAGGAGGAGTAGTCGAGCGAGTAATTCGGGTTCGGGTCAAAATCAGAACCCTAATCCCAGTCCGGTGAGTCAGAAGAGTTATCATAGTGCGCCGCCGAAGGCTACGGCGCCGGCGCCGATGAGTGGTGCGATGAGAGGGCAAAGGGTGGTGAATTTGTGGACGGCGTGTCCGTATTGTTACAATTTGTATGAGTATCCTAGGGTTTATGAAGGGTGTTGTTTACGATGTGATAAATGTAAAAGGGCTTTTACTGCTACTGAGATTTTGTCAATGCCACCAATGGTGCCAGGGAAAGAAGCTTATTATTGCATTTGGGGGTTTTTTCCAATGGGTTTTGTGAATGGGAATTTGGAGGATTTGGGTACTGTGAAAGGAGCTGCTGCTGCTGCTGCAACTACTGGTGCATTTCCAACTTGGATGCCACCGATGTTTTCGACTCAAAATGCTGCGAATAATCAACAAAATGCTACTCCAATTCCAGCTACGGTTCAGGTAACGAATCCAGCGCCAGCGCGGCCTCAGGCTCCTCCACCTCCTCCTGCTGCTGCTGCTGCTGCTCCCAGACCAATGTCGACAGGACCTAAGAAAAGAGGTAGGCCTAGGAAGTATAACTAAAAAAGGTTTGATTTTTATGGTTTGTCTCAAGAATTTTGAGTCTTATGGAGATTATAATGTTTAGTTTGATCAAGTCGACTGGAATTGAATGATCGATCGCATCTTGTAGTAAGTTGAGTAGTGAGCAAAAGTAGTTGCTTTTCTACTCATCATATGAAGAAGTATATAACTGCAGAACTGTGCTGTAGCTTGTTCTTGTTAGATGCCTTGTGTTTGTAGAAATTTCTCGTTGTTGGTAGATTTTCTGCGGTTTGTAGGTACTATATTTATTCAATTGTCAAGACTCGTTTTGTAATTGAATGATCTTTATGCCAAATTTCGAAATTCTAATTTCTGTCTT : GTGTAAAATAAGAATTAGCATAACAACACAAACAACTTAAACGTAAAACAAAACAAA</gDNA_template>
            <first_frame> N  L  F  T  L  D  S  Y  T  P  L  P  P  T  P  S  S  S  S  P  N  H  P  S  I  S  P  S  P  F  Q  I  K  P  P  K  P  *  N  P  Q  K  L  R  K  K  W  S  I  I  Q  L  Q  A  E  Q  K  Q  R  D  C  *  E  L  Q  K  S  C  *  E  I  K  N  L  P  L  V  K  I  L  H  F  L  L  K  K  L  S  L  Y  L  K  D  L  T  R  S  *  Q  L  L  K  F  F  *  L  L  L  N  E  S  T  I  T  M  I  G  T  L  F  F  K  S  K  V  V  L  K  I  Q  S  L  S  R  N  S  I  V  V  L  L  F  F  F  I  L  I  K  T  N  T  H  L  Q  I  L  L  S  A  L  L  L  M  L  G  L  F  F  Q  I  H  Q  K  R  V  F  M  I  M  N  F  P  F  L  V  E  L  N  *  L  L  L  L  D  E  E  D  L  E  G  V  I  I  S  R  R  K  E  M  R  S  Y  L  *  G  G  V  V  E  R  V  I  R  V  R  V  K  I  R  T  L  I  P  V  R  *  V  R  R  V  I  I  V  R  R  R  R  L  R  R  R  R  R  *  V  V  R  *  E  G  K  G  W  *  I  C  G  R  R  V  R  I  V  T  I  C  M  S  I  L  G  F  M  K  G  V  V  Y  D  V  I  N  V  K  G  L  L  L  L  L  R  F  C  Q  C  H  Q  W  C  Q  G  K  K  L  I  I  A  F  G  G  F  F  Q  W  V  L  *  M  G  I  W  R  I  W  V  L  *  K  E  L  L  L  L  L  Q  L  L  V  H  F  Q  L  G  C  H  R  C  F  R  L  K  M  L  R  I  I  N  K  M  L  L  Q  F  Q  L  R  F  R  *  R  I  Q  R  Q  R  G  L  R  L  L  H  L  L  L  L  L  L  L  L  L  P  D  Q  C  R  Q  D  L  R  K  E  V  G  L  G  S  I  T  K  K  G  L  I  F  M  V  C  L  K  N  F  E  S  Y  G  D  Y  N  V  *  F  D  Q  V  D  W  N  *  M  I  D  R  I  L  *  *  V  E  *  *  A  K  V  V  A  F  L  L  I  I  *  R  S  I  *  L  Q  N  C  A  V  A  C  S  C  *  M  P  C  V  C  R  N  F  S  L  L  V  D  F  L  R  F  V  G  T  I  F  I  Q  L  S  R  L  V  L  *  L  N  D  L  Y  A  K  F  R  N  S  N  F  C  L  :  V  *  N  K  N  *  H  N  N  T  N  N  L  N  V  K  Q  N  K </first_frame>
            <second_frame>  I  F  L  H  S  T  V  T  P  H  Y  P  P  P  P  L  P  L  P  Q  I  I  H  Q  F  L  R  L  H  F  R  S  N  P  Q  S  P  K  I  P  K  N  *  G  K  N  G  A  S  Y  N  Y  K  Q  S  R  S  R  E  T  V  R  S  C  R  K  A  V  K  R  *  R  I  C  P  L  *  R  F  C  T  S  C  S  R  N  *  A  F  T  *  R  T  *  P  D  L  S  N  C  *  S  S  F  S  F  C  *  T  N  Q  Q  S  P  *  L  V  L  Y  S  S  N  P  R  S  Y  *  R  F  R  A  Y  Q  E  T  V  S  S  S  C  S  S  S  S  S  *  *  K  Q  I  P  I  F  R  Y  C  F  R  P  C  C  *  C  L  G  C  S  F  R  S  I  K  K  G  S  L  *  *  *  T  F  P  F  W  *  S  *  I  D  S  F  C  S  T  R  K  T  *  R  E  L  *  *  A  E  E  R  R  C  E  V  T  C  E  E  E  *  S  S  E  *  F  G  F  G  S  K  S  E  P  *  S  Q  S  G  E  S  E  E  L  S  *  C  A  A  E  G  Y  G  A  G  A  D  E  W  C  D  E  R  A  K  G  G  E  F  V  D  G  V  S  V  L  L  Q  F  V  *  V  S  *  G  L  *  R  V  L  F  T  M  *  *  M  *  K  G  F  Y  C  Y  *  D  F  V  N  A  T  N  G  A  R  E  R  S  L  L  L  H  L  G  V  F  S  N  G  F  C  E  W  E  F  G  G  F  G  Y  C  E  R  S  C  C  C  C  C  N  Y  W  C  I  S  N  L  D  A  T  D  V  F  D  S  K  C  C  E  *  S  T  K  C  Y  S  N  S  S  Y  G  S  G  N  E  S  S  A  S  A  A  S  G  S  S  T  S  S  C  C  C  C  C  C  S  Q  T  N  V  D  R  T  *  E  K  R  *  A  *  E  V  *  L  K  K  V  *  F  L  W  F  V  S  R  I  L  S  L  M  E  I  I  M  F  S  L  I  K  S  T  G  I  E  *  S  I  A  S  C  S  K  L  S  S  E  Q  K  *  L  L  F  Y  S  S  Y  E  E  V  Y  N  C  R  T  V  L  *  L  V  L  V  R  C  L  V  F  V  E  I  S  R  C  W  *  I  F  C  G  L  *  V  L  Y  L  F  N  C  Q  D  S  F  C  N  *  M  I  F  M  P  N  F  E  I  L  I  S  V  L :   C  K  I  R  I  S  I  T  T  Q  T  T  *  T  *  N  K  T   </second_frame>
            <third_frame>   S  F  Y  T  R  Q  L  H  P  T  T  P  H  P  L  F  L  F  P  K  S  S  I  N  F  S  V  S  I  S  D  Q  T  P  K  A  L  K  S  P  K  I  E  E  K  M  E  H  H  T  T  T  S  R  A  E  A  E  R  L  L  G  V  A  E  K  L  L  R  D  K  E  F  A  P  C  K  D  F  A  L  L  A  Q  E  T  E  P  L  L  E  G  P  D  Q  I  L  A  I  A  E  V  L  L  A  S  V  K  R  I  N  N  H  H  D  W  Y  S  I  L  Q  I  Q  G  R  T  E  D  S  E  L  I  K  K  Q  Y  R  R  L  A  L  L  L  H  P  D  K  N  K  Y  P  S  S  D  T  A  F  G  L  V  A  D  A  W  A  V  L  S  D  P  S  K  K  G  L  Y  D  N  E  L  S  L  F  G  R  V  K  L  T  P  S  A  R  R  G  R  P  R  G  S  Y  N  K  Q  K  K  G  D  A  K  L  P  V  R  R  S  S  R  A  S  N  S  G  S  G  Q  N  Q  N  P  N  P  S  P  V  S  Q  K  S  Y  H  S  A  P  P  K  A  T  A  P  A  P  M  S  G  A  M  R  G  Q  R  V  V  N  L  W  T  A  C  P  Y  C  Y  N  L  Y  E  Y  P  R  V  Y  E  G  C  C  L  R  C  D  K  C  K  R  A  F  T  A  T  E  I  L  S  M  P  P  M  V  P  G  K  E  A  Y  Y  C  I  W  G  F  F  P  M  G  F  V  N  G  N  L  E  D  L  G  T  V  K  G  A  A  A  A  A  A  T  T  G  A  F  P  T  W  M  P  P  M  F  S  T  Q  N  A  A  N  N  Q  Q  N  A  T  P  I  P  A  T  V  Q  V  T  N  P  A  P  A  R  P  Q  A  P  P  P  P  P  A  A  A  A  A  A  P  R  P  M  S  T  G  P  K  K  R  G  R  P  R  K  Y  N  *  K  R  F  D  F  Y  G  L  S  Q  E  F  *  V  L  W  R  L  *  C  L  V  *  S  S  R  L  E  L  N  D  R  S  H  L  V  V  S  *  V  V  S  K  S  S  C  F  S  T  H  H  M  K  K  Y  I  T  A  E  L  C  C  S  L  F  L  L  D  A  L  C  L  *  K  F  L  V  V  G  R  F  S  A  V  C  R  Y  Y  I  Y  S  I  V  K  T  R  F  V  I  E  *  S  L  C  Q  I  S  K  F  *  F  L  S   : C  V  K  *  E  L  A  *  Q  H  K  Q  L  K  R  K  T  K  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68253" stop="67000"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1251</number_coding_nucleotides>
                  <number_encoded_amino_acids>417</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFYTRQLHPTTPHPLFLFPKSSINFSVSISDQTPKALKSPKIEEKMEHHTTTSRAEAERLLGVAEKLLRDKEFAPCKDFALLAQETEPLLEGPDQILAIAEVLLASVKRINNHHDWYSILQIQGRTEDSELIKKQYRRLALLLHPDKNKYPSSDTAFGLVADAWAVLSDPSKKGLYDNELSLFGRVKLTPSARRGRPRGSYNKQKKGDAKLPVRRSSRASNSGSGQNQNPNPSPVSQKSYHSAPPKATAPAPMSGAMRGQRVVNLWTACPYCYNLYEYPRVYEGCCLRCDKCKRAFTATEILSMPPMVPGKEAYYCIWGFFPMGFVNGNLEDLGTVKGAAAAAATTGAFPTWMPPMFSTQNAANNQQNATPIPATVQVTNPAPARPQAPPPPPAAAAAAPRPMSTGPKKRGRPRKYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73654" PGL_stop="79872"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73654" e_stop="73857"/>
            <exon e_start="73990" e_stop="74172"/>
            <exon e_start="76622" e_stop="76700"/>
            <exon e_start="77301" e_stop="77362"/>
            <exon e_start="77662" e_stop="77761"/>
            <exon e_start="77847" e_stop="77888"/>
            <exon e_start="78200" e_stop="78241"/>
            <exon e_start="78391" e_stop="78524"/>
            <exon e_start="79306" e_stop="79356"/>
            <exon e_start="79648" e_stop="79872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="0.995"/>
          <exon-intron don_prob="0.997" acc_prob="0.996" e_score="0.995"/>
          <exon-intron don_prob="0.998" acc_prob="0.995" e_score="0.987"/>
          <exon-intron don_prob="0.998" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="0.952"/>
          <exon-intron don_prob="0.998" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="73654" e_stop="73857" e_length="204"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="73858" i_stop="73989" i_length="132"/>
          </intron>
          <exon e_serial="2" e_score="0.995">
            <gDNA_exon_boundary e_start="73990" e_stop="74172" e_length="183"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74173" i_stop="76621" i_length="2449"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="76622" e_stop="76700" e_length="79"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.995">
            <gDNA_intron_boundary i_start="76701" i_stop="77300" i_length="600"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="77301" e_stop="77362" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77363" i_stop="77661" i_length="299"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="77662" e_stop="77761" e_length="100"/>
          </exon>
          <intron i_serial="5" don_prob="0.996" acc_prob="0.998">
            <gDNA_intron_boundary i_start="77762" i_stop="77846" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="0.952">
            <gDNA_exon_boundary e_start="77847" e_stop="77888" e_length="42"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="77889" i_stop="78199" i_length="311"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="78200" e_stop="78241" e_length="42"/>
          </exon>
          <intron i_serial="7" don_prob="0.998" acc_prob="0.992">
            <gDNA_intron_boundary i_start="78242" i_stop="78390" i_length="149"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="78391" e_stop="78524" e_length="134"/>
          </exon>
          <intron i_serial="8" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="78525" i_stop="79305" i_length="781"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="79306" e_stop="79356" e_length="51"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79357" i_stop="79647" i_length="291"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="79648" e_stop="79872" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73654" stop="73857"/>
              <exon start="73990" stop="74172"/>
              <exon start="76622" stop="76700"/>
              <exon start="77301" stop="77362"/>
              <exon start="77662" stop="77761"/>
              <exon start="77847" stop="77888"/>
              <exon start="78200" stop="78241"/>
              <exon start="78391" stop="78524"/>
              <exon start="79306" stop="79356"/>
              <exon start="79648" stop="79872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAATAGTACTTATTCCATCTCCAAAATTAGGTCTTACATATTTCTATACTCAATTATTGGCCCATTTTTGTATAGGTTTTCTAACTAGATCTAAAGTTTTCCTCTTTTATTAGGGTTTCTTACAATTTCTTACTATTTATATCTTTTGTGAGATTTCTTAGAAAGTTTGAGGAAAGATAATTATCTTCTTCGACCTGTTAAG : GATGGCAAGGGAAAAGATAAAAATAAAAAAGATAGATAATATAACAGCAAGACAAGTAACATTTTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCTGAAGAGCTTTCTGTTCTTTGTGATGCTGATGTTGCTCTTATCATTTTTTCTGCTACTGGAAAGCTATTTGATTTTGCTAGCACCAG : CATGAAGGATATTCTTGGAAAGTATAAGTTGCAATCAGCTAGCCTTGAGAAAGTTGACCAACCTTCCCTTGATTTACAG : CTAGAGAATAGCCTCAACATGAGATTAAGCAAGCAGGTAGCTGATAAAACTCGTGAGCTCAG : GCAGATGAGAGGTGAGGAACTTGAAGGATTGAGTTTAGAAGAATTACAACAAATTGAGAAAAGACTTGAAGCTGGTTTCAACCGTGTGCTTGAGATTAAG : GGTAAACGAATTATGGATGAAATTACCAACCTCCAAAGAAAG : GGTGCTGAGCTGATGGAAGAAAACAAACAATTGAAACACAAA : ATGGAAATTATGAAAAAAGGGAAATTGCCTTTAGTGACTGACATGGTGATGGAAGAGGGCCAATCATCTGAGTCTATAATTACAACTAATAATCCTGATCAAGATGATTCATCAAATGCATCTTTGAAGTTAGG : TGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGG : GCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGTATGTATGTGGACAACTTGACAAAGGGCATAATGCAGATTGATTAACCATCTC</gDNA_template>
            <first_frame> V  N  S  T  Y  S  I  S  K  I  R  S  Y  I  F  L  Y  S  I  I  G  P  F  L  Y  R  F  S  N  *  I  *  S  F  P  L  L  L  G  F  L  T  I  S  Y  Y  L  Y  L  L  *  D  F  L  E  S  L  R  K  D  N  Y  L  L  R  P  V  K  :  D  G  K  G  K  D  K  N  K  K  D  R  *  Y  N  S  K  T  S  N  I  F  K  E  E  K  R  A  F  *  E  S  *  R  A  F  C  S  L  *  C  *  C  C  S  Y  H  F  F  C  Y  W  K  A  I  *  F  C  *  H  Q  :  H  E  G  Y  S  W  K  V  *  V  A  I  S  *  P  *  E  S  *  P  T  F  P  *  F  T   : A  R  E  *  P  Q  H  E  I  K  Q  A  G  S  *  *  N  S  *  A  Q  :  A  D  E  R  *  G  T  *  R  I  E  F  R  R  I  T  T  N  *  E  K  T  *  S  W  F  Q  P  C  A  *  D  *   : G  *  T  N  Y  G  *  N  Y  Q  P  P  K  K   : G  C  *  A  D  G  R  K  Q  T  I  E  T  Q   : N  G  N  Y  E  K  R  E  I  A  F  S  D  *  H  G  D  G  R  G  P  I  I  *  V  Y  N  Y  N  *  *  S  *  S  R  *  F  I  K  C  I  F  E  V  R  :  W  Y  Y  C  S  *  R  *  L  L  N  Y  I  F  K  V  R  :  A  T  I  Q  L  T  N  S  K  E  E  A  F  V  E  D  C  T  N  N  N  F  W  M  I  T  I  S  G  I  Y  I  Y  I  C  L  L  L  E  K  I  L  H  W  N  I  I  V  T  A  *  F  Y  Y  V  L  Y  V  C  M  W  T  T  *  Q  R  A  *  C  R  L  I  N  H  L </first_frame>
            <second_frame>  *  I  V  L  I  P  S  P  K  L  G  L  T  Y  F  Y  T  Q  L  L  A  H  F  C  I  G  F  L  T  R  S  K  V  F  L  F  Y  *  G  F  L  Q  F  L  T  I  Y  I  F  C  E  I  S  *  K  V  *  G  K  I  I  I  F  F  D  L  L  R :   M  A  R  E  K  I  K  I  K  K  I  D  N  I  T  A  R  Q  V  T  F  S  K  R  R  R  G  L  F  K  K  A  E  E  L  S  V  L  C  D  A  D  V  A  L  I  I  F  S  A  T  G  K  L  F  D  F  A  S  T  S :   M  K  D  I  L  G  K  Y  K  L  Q  S  A  S  L  E  K  V  D  Q  P  S  L  D  L  Q  :  L  E  N  S  L  N  M  R  L  S  K  Q  V  A  D  K  T  R  E  L  R :   Q  M  R  G  E  E  L  E  G  L  S  L  E  E  L  Q  Q  I  E  K  R  L  E  A  G  F  N  R  V  L  E  I  K  :  G  K  R  I  M  D  E  I  T  N  L  Q  R  K  :  G  A  E  L  M  E  E  N  K  Q  L  K  H  K  :  M  E  I  M  K  K  G  K  L  P  L  V  T  D  M  V  M  E  E  G  Q  S  S  E  S  I  I  T  T  N  N  P  D  Q  D  D  S  S  N  A  S  L  K  L  G :   G  T  T  A  V  E  D  D  C  S  I  T  S  L  K  L  G :   L  P  F  S  *  Q  T  Q  R  R  K  L  L  L  K  I  V  L  I  I  I  F  G  *  *  Q  S  V  A  Y  I  Y  I  F  A  F  F  W  K  K  Y  Y  I  G  I  *  L  S  L  L  N  S  T  M  Y  Y  M  Y  V  C  G  Q  L  D  K  G  H  N  A  D  *  L  T  I   </second_frame>
            <third_frame>   E  *  Y  L  F  H  L  Q  N  *  V  L  H  I  S  I  L  N  Y  W  P  I  F  V  *  V  F  *  L  D  L  K  F  S  S  F  I  R  V  S  Y  N  F  L  L  F  I  S  F  V  R  F  L  R  K  F  E  E  R  *  L  S  S  S  T  C  *   : G  W  Q  G  K  R  *  K  *  K  R  *  I  I  *  Q  Q  D  K  *  H  F  Q  R  G  E  E  G  F  L  R  K  L  K  S  F  L  F  F  V  M  L  M  L  L  L  S  F  F  L  L  L  E  S  Y  L  I  L  L  A  P   : A  *  R  I  F  L  E  S  I  S  C  N  Q  L  A  L  R  K  L  T  N  L  P  L  I  Y  S :   *  R  I  A  S  T  *  D  *  A  S  R  *  L  I  K  L  V  S  S   : G  R  *  E  V  R  N  L  K  D  *  V  *  K  N  Y  N  K  L  R  K  D  L  K  L  V  S  T  V  C  L  R  L  R :   V  N  E  L  W  M  K  L  P  T  S  K  E  R :   V  L  S  *  W  K  K  T  N  N  *  N  T  K :   W  K  L  *  K  K  G  N  C  L  *  *  L  T  W  *  W  K  R  A  N  H  L  S  L  *  L  Q  L  I  I  L  I  K  M  I  H  Q  M  H  L  *  S  *   : V  V  L  L  Q  L  K  M  I  A  Q  L  H  L  *  S  *   : G  Y  H  S  A  N  K  L  K  G  G  S  F  C  *  R  L  Y  *  *  *  F  L  D  D  N  N  Q  W  H  I  Y  I  Y  L  P  S  F  G  K  N  I  T  L  E  Y  N  C  H  C  L  I  L  L  C  I  I  C  M  Y  V  D  N  L  T  K  G  I  M  Q  I  D  *  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73826" stop="73857"/>
                    <exon start="73990" stop="74172"/>
                    <exon start="76622" stop="76700"/>
                    <exon start="77301" stop="77362"/>
                    <exon start="77662" stop="77761"/>
                    <exon start="77847" stop="77888"/>
                    <exon start="78200" stop="78241"/>
                    <exon start="78391" stop="78524"/>
                    <exon start="79306" stop="79356"/>
                    <exon start="79648" stop="79663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKIIIFFDLLRMAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSATGKLFDFASTSMKDILGKYKLQSASLEKVDQPSLDLQLENSLNMRLSKQVADKTRELRQMRGEELEGLSLEELQQIEKRLEAGFNRVLEIKGKRIMDEITNLQRKGAELMEENKQLKHKMEIMKKGKLPLVTDMVMEEGQSSESIITTNNPDQDDSSNASLKLGGTTAVEDDCSITSLKLGLPFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="79015" e_stop="79356"/>
            <exon e_start="79648" e_stop="79872"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="0.988"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.988">
            <gDNA_exon_boundary e_start="79015" e_stop="79356" e_length="342"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79357" i_stop="79647" i_length="291"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="79648" e_stop="79872" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79015" stop="79356"/>
              <exon start="79648" stop="79872"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U320377" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTGTTCCTTTTAGCTTGAGTTAATTTAGTATCTTGTTGATATTGCTTTCTTTTTATCGTTCTATAAGTCAATGGTTTATCGAAACAAATTTTTTTTTATTTTTGAAGATAAAGATAAGGTTCGTATGCACTTTTATCTTTCTTAAACATGACTTGTGAAATTATAAATATATTTATTAGTGTTTGTTACCATCAACCTAATTTAACTTGTTATATAACATGTTTATTGATCTTATATTCTATGTTACAAGTTTTACTAATTACTATAATCTTTTGTCTATGTTGTAACAGTGGTACTACTGCAGTTGAAGATGATTGCTCAATTACATCTTTAAAGTTAGG : GCTACCATTCAGCTAACAAACTCAAAGGAGGAAGCTTTTGTTGAAGATTGTACTAATAATAATTTTTGGATGATAACAATCAGTGGCATATATATATATATTTGCCTTCTTTTGGAAAAAATATTACATTGGAATATAATTGTCACTGCTTAATTCTACTATGTATTATATGTATGTATGTGGACAACTTGACAAAGGGCATAATGCAGATTGATTAACCATCTC</gDNA_template>
            <first_frame> V  V  P  F  S  L  S  *  F  S  I  L  L  I  L  L  S  F  Y  R  S  I  S  Q  W  F  I  E  T  N  F  F  L  F  L  K  I  K  I  R  F  V  C  T  F  I  F  L  K  H  D  L  *  N  Y  K  Y  I  Y  *  C  L  L  P  S  T  *  F  N  L  L  Y  N  M  F  I  D  L  I  F  Y  V  T  S  F  T  N  Y  Y  N  L  L  S  M  L  *  Q  W  Y  Y  C  S  *  R  *  L  L  N  Y  I  F  K  V  R  :  A  T  I  Q  L  T  N  S  K  E  E  A  F  V  E  D  C  T  N  N  N  F  W  M  I  T  I  S  G  I  Y  I  Y  I  C  L  L  L  E  K  I  L  H  W  N  I  I  V  T  A  *  F  Y  Y  V  L  Y  V  C  M  W  T  T  *  Q  R  A  *  C  R  L  I  N  H  L </first_frame>
            <second_frame>  L  F  L  L  A  *  V  N  L  V  S  C  *  Y  C  F  L  F  I  V  L  *  V  N  G  L  S  K  Q  I  F  F  Y  F  *  R  *  R  *  G  S  Y  A  L  L  S  F  L  N  M  T  C  E  I  I  N  I  F  I  S  V  C  Y  H  Q  P  N  L  T  C  Y  I  T  C  L  L  I  L  Y  S  M  L  Q  V  L  L  I  T  I  I  F  C  L  C  C  N  S  G  T  T  A  V  E  D  D  C  S  I  T  S  L  K  L  G :   L  P  F  S  *  Q  T  Q  R  R  K  L  L  L  K  I  V  L  I  I  I  F  G  *  *  Q  S  V  A  Y  I  Y  I  F  A  F  F  W  K  K  Y  Y  I  G  I  *  L  S  L  L  N  S  T  M  Y  Y  M  Y  V  C  G  Q  L  D  K  G  H  N  A  D  *  L  T  I   </second_frame>
            <third_frame>   C  S  F  *  L  E  L  I  *  Y  L  V  D  I  A  F  F  L  S  F  Y  K  S  M  V  Y  R  N  K  F  F  F  I  F  E  D  K  D  K  V  R  M  H  F  Y  L  S  *  T  *  L  V  K  L  *  I  Y  L  L  V  F  V  T  I  N  L  I  *  L  V  I  *  H  V  Y  *  S  Y  I  L  C  Y  K  F  Y  *  L  L  *  S  F  V  Y  V  V  T  V  V  L  L  Q  L  K  M  I  A  Q  L  H  L  *  S  *   : G  Y  H  S  A  N  K  L  K  G  G  S  F  C  *  R  L  Y  *  *  *  F  L  D  D  N  N  Q  W  H  I  Y  I  Y  L  P  S  F  G  K  N  I  T  L  E  Y  N  C  H  C  L  I  L  L  C  I  I  C  M  Y  V  D  N  L  T  K  G  I  M  Q  I  D  *  P  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="79133" stop="79356"/>
                    <exon start="79648" stop="79663"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSYALLSFLNMTCEIINIFISVCYHQPNLTCYITCLLILYSMLQVLLITIIFCLCCNSGTTAVEDDCSITSLKLGLPFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="93433" PGL_stop="85541"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93433" e_stop="93382"/>
            <exon e_start="92655" e_stop="92497"/>
            <exon e_start="92374" e_stop="92315"/>
            <exon e_start="91281" e_stop="91118"/>
            <exon e_start="90745" e_stop="90622"/>
            <exon e_start="90520" e_stop="90423"/>
            <exon e_start="90331" e_stop="90218"/>
            <exon e_start="90032" e_stop="89972"/>
            <exon e_start="89480" e_stop="89331"/>
            <exon e_start="89135" e_stop="89025"/>
            <exon e_start="88548" e_stop="88381"/>
            <exon e_start="88279" e_stop="88166"/>
            <exon e_start="87284" e_stop="87228"/>
            <exon e_start="86604" e_stop="85541"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.789" acc_prob="0.872" e_score="1.000"/>
          <exon-intron don_prob="0.943" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.593" acc_prob="0.985" e_score="0.950"/>
          <exon-intron don_prob="0.952" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.904" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.918" e_score="0.990"/>
          <exon-intron don_prob="0.000" acc_prob="0.983" e_score="0.991"/>
          <exon-intron don_prob="0.948" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.836" e_score="0.993"/>
          <exon-intron don_prob="0.964" acc_prob="0.980" e_score="1.000"/>
          <exon-intron don_prob="0.888" acc_prob="0.915" e_score="0.994"/>
          <exon-intron don_prob="0.773" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93433" e_stop="93382" e_length="52"/>
          </exon>
          <intron i_serial="1" don_prob="0.789" acc_prob="0.872">
            <gDNA_intron_boundary i_start="93381" i_stop="92656" i_length="726"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="92655" e_stop="92497" e_length="159"/>
          </exon>
          <intron i_serial="2" don_prob="0.943" acc_prob="0.996">
            <gDNA_intron_boundary i_start="92496" i_stop="92375" i_length="122"/>
          </intron>
          <exon e_serial="3" e_score="0.950">
            <gDNA_exon_boundary e_start="92374" e_stop="92315" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.593" acc_prob="0.985">
            <gDNA_intron_boundary i_start="92314" i_stop="91282" i_length="1033"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="91281" e_stop="91118" e_length="164"/>
          </exon>
          <intron i_serial="4" don_prob="0.952" acc_prob="1.000">
            <gDNA_intron_boundary i_start="91117" i_stop="90746" i_length="372"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="90745" e_stop="90622" e_length="124"/>
          </exon>
          <intron i_serial="5" don_prob="0.904" acc_prob="0.996">
            <gDNA_intron_boundary i_start="90621" i_stop="90521" i_length="101"/>
          </intron>
          <exon e_serial="6" e_score="0.990">
            <gDNA_exon_boundary e_start="90520" e_stop="90423" e_length="98"/>
          </exon>
          <intron i_serial="6" don_prob="0.000" acc_prob="0.918">
            <gDNA_intron_boundary i_start="90422" i_stop="90332" i_length="91"/>
          </intron>
          <exon e_serial="7" e_score="0.991">
            <gDNA_exon_boundary e_start="90331" e_stop="90218" e_length="114"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="90217" i_stop="90033" i_length="185"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="90032" e_stop="89972" e_length="61"/>
          </exon>
          <intron i_serial="8" don_prob="0.948" acc_prob="0.999">
            <gDNA_intron_boundary i_start="89971" i_stop="89481" i_length="491"/>
          </intron>
          <exon e_serial="9" e_score="0.993">
            <gDNA_exon_boundary e_start="89480" e_stop="89331" e_length="150"/>
          </exon>
          <intron i_serial="9" don_prob="0.995" acc_prob="0.836">
            <gDNA_intron_boundary i_start="89330" i_stop="89136" i_length="195"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="89135" e_stop="89025" e_length="111"/>
          </exon>
          <intron i_serial="10" don_prob="0.964" acc_prob="0.980">
            <gDNA_intron_boundary i_start="89024" i_stop="88549" i_length="476"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="88548" e_stop="88381" e_length="168"/>
          </exon>
          <intron i_serial="11" don_prob="0.888" acc_prob="0.915">
            <gDNA_intron_boundary i_start="88380" i_stop="88280" i_length="101"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="88279" e_stop="88166" e_length="114"/>
          </exon>
          <intron i_serial="12" don_prob="0.773" acc_prob="0.933">
            <gDNA_intron_boundary i_start="88165" i_stop="87285" i_length="881"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="87284" e_stop="87228" e_length="57"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="87227" i_stop="86605" i_length="623"/>
          </intron>
          <exon e_serial="14" e_score="0.994">
            <gDNA_exon_boundary e_start="86604" e_stop="85541" e_length="1064"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93433" stop="93382"/>
              <exon start="92655" stop="92497"/>
              <exon start="92374" stop="92315"/>
              <exon start="91281" stop="91118"/>
              <exon start="90745" stop="90622"/>
              <exon start="90520" stop="90423"/>
              <exon start="90331" stop="90218"/>
              <exon start="90032" stop="89972"/>
              <exon start="89480" stop="89331"/>
              <exon start="89135" stop="89025"/>
              <exon start="88548" stop="88381"/>
              <exon start="88279" stop="88166"/>
              <exon start="87284" stop="87228"/>
              <exon start="86604" stop="85541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCAAGTGAAGTTGCTTCACTAATATCATCGATTGTATTGGTTTTCAG : GTTCAGAAGATATAAAGGTTCTTACCATATGCAATTTAACATTGTGACTTTTGGGTGTCATTTCTTTAAGCATATTAGAAAATGGCAGTTTCTGTGTCACTGCTGCTGCCCCGTGAATTGGGTATTCACGGAAAATGTGGACTAAGCGGTCAGTCTAAG : GGCAAGATGAGCAGGAGTCAGACAGATTCTTGCAGCATATTTCTGTCGTCACATTCTATG : CGGCAGGATCCTTGGAGCATCTACCTTCTGAATACTGTACACAGGCCTTTGTTTTCCCATCCTTCACCAACTAGATGTAATGTATTACTATGCCGCTCCTTGCTAAAGCCAGGTGGAGGATATGAGAGTCAAGTTCTGGAAACAGCAACACTGATTTGGAAAAG : GTCATTAAGTACTATACATGGAAGCCCACTTGTGCTTCAGCTGATTCCGGCCATTGGTGTTCTTGTTTTTGCTGCATGGGGTCTCACTCCACTGATGCGCTTTGGAAGAAAGCTTTTCCTTCAT : GAAAGTGATAGCAATTGGAAACAGAGTAGCTGGCATTATGTTACAGCTTCCTATCTTAAACCTGTGCTTTTATGGACTGGAGCAATACTTATATGCAG : AGCAATAGATCCACTGGTTCTACCTACAGTTTCTAGCCAGGCAGTCAAGCAAAGATTTCTTAATTTTATACGATCATTATCGACAGTGATGGCACTTGCCTACTGTTTATCTAG : CTTGATTCAGCAAACACAAAAATTCCTCGTGGAGACAAAAGACCCTGCTGATGCAAGAAAT : ATGGGGTTCGAATTTGCAGGGAAAGCTATATATACTGCAGTATGGGTTGCTGCCGTTTCATTGTTCATGGAATTGCTTGGTTTTTCTACACAGAAGTGGCTGACAGCTGGGGGTCTTGGGACAGTATTGCTCACTCTTGCTGGTCGTGAG : ATACTTACAAACTTCCTCTCGAGCATAATGATCCATGCAACAAGGCCCTTTGTTCTAAATGACTGGATACAGACTAAGATACAGGGATATGATGTCTCTGGCACAGTGGAG : CACGTAGGTTGGTGGTCACCTACAGTCATAAGAGGTGATGATCGTGAAGCAATTCATATACCAAATCACAAATTTTCAGTGAATATCGTCAGGAATCTTACTCAGAGGACTCACTGGCGGATCAAGACTCATCTTGCCATCAGCCACTTGGATGTGAATAAGATCAAC : AACATTGTTGCGGATATGCGGAAGGTTTTGTCAAAACATCCTATGGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATAACGTTGATCCAGAGAATCAGGCTCTTAAG : ATACTGATTTCTTGCTTTGTGAAGACTCCTCGTTTTGAAGAGTACCTCCGAGTGAAG : GAAGTTATATTGCTGGATCTACTTCGAGTAATTAGCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGCGAGATTGATGCAGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCCAAGTCCTCCTCATCGAGCCTTCTTATAAGATCAGTAGTGATGATAAAGCCAAAGCTTCTGCTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCAACAATTACATCACGGACCGCTGATGACACAAATGGCAAGCCATCAACTCTCGTTGAAAAGGAAGTCGATAAGGCCTCATCAGCATCAAATGCGAATGGTGATTTAAAAGCAGCAACTTCACCATCAGATGGAAAATCACTAAAACAAGGATCTACCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAGTTGCTGGAGACCCCCCGGGGTTGACATCAGATACCAACATTGAGAAGACAGATGCAGCGTCTTCTGCTTCACAGGCACAACAAGATACCGAAAGATCAATTTCTTCTCCACCTTCTTCAGTTGGAAGGCCCATGTTAGAAGACAACATTGTTCTTGGTGTTGCACTGGAAGGGTCAAAACTAACACTTCCAATTGAGGAGGACGAAACGACTCCACCTTCTCCCTCGGAATCAAAAGAGTTAGCTGCCTGCCGGAATGGTAATAGCTCAACCAACTCAAACAAAGATAAGACGGACGATAAGATGCCAGGAGCTCCAAGCACACAAAGTACATCAAATGAACAAAAAGAACGCGAAAGGTGATTATTTGAAGGTTGAGCAATGTGCAATAATGCGCTAAGGCTATTTTTTTAGAGCTTGCATTGTGCACACTGTAAATGTTTTTCTCATGAAATTTATTTTATTATATATAATTGTGGAGCATTAGTTGGCTTGTATTTAGCATTTGGTAATGATCAATGTAGACACAATAATACCACTAACTTTTAGCTTAAGGCTTGGTCTAACCATCCACCATCTTTAGCTTGCAATTCAATTGTACTGTTCTACCATAA</gDNA_template>
            <first_frame> F  F  Q  V  K  L  L  H  *  Y  H  R  L  Y  W  F  S   : G  S  E  D  I  K  V  L  T  I  C  N  L  T  L  *  L  L  G  V  I  S  L  S  I  L  E  N  G  S  F  C  V  T  A  A  A  P  *  I  G  Y  S  R  K  M  W  T  K  R  S  V  *   : G  Q  D  E  Q  E  S  D  R  F  L  Q  H  I  S  V  V  T  F  Y   : A  A  G  S  L  E  H  L  P  S  E  Y  C  T  Q  A  F  V  F  P  S  F  T  N  *  M  *  C  I  T  M  P  L  L  A  K  A  R  W  R  I  *  E  S  S  S  G  N  S  N  T  D  L  E  K  :  V  I  K  Y  Y  T  W  K  P  T  C  A  S  A  D  S  G  H  W  C  S  C  F  C  C  M  G  S  H  S  T  D  A  L  W  K  K  A  F  P  S   : *  K  *  *  Q  L  E  T  E  *  L  A  L  C  Y  S  F  L  S  *  T  C  A  F  M  D  W  S  N  T  Y  M  Q  :  S  N  R  S  T  G  S  T  Y  S  F  *  P  G  S  Q  A  K  I  S  *  F  Y  T  I  I  I  D  S  D  G  T  C  L  L  F  I  *  :  L  D  S  A  N  T  K  I  P  R  G  D  K  R  P  C  *  C  K  K   : Y  G  V  R  I  C  R  E  S  Y  I  Y  C  S  M  G  C  C  R  F  I  V  H  G  I  A  W  F  F  Y  T  E  V  A  D  S  W  G  S  W  D  S  I  A  H  S  C  W  S  *   : D  T  Y  K  L  P  L  E  H  N  D  P  C  N  K  A  L  C  S  K  *  L  D  T  D  *  D  T  G  I  *  C  L  W  H  S  G   : A  R  R  L  V  V  T  Y  S  H  K  R  *  *  S  *  S  N  S  Y  T  K  S  Q  I  F  S  E  Y  R  Q  E  S  Y  S  E  D  S  L  A  D  Q  D  S  S  C  H  Q  P  L  G  C  E  *  D  Q   : Q  H  C  C  G  Y  A  E  G  F  V  K  T  S  Y  G  G  T  A  T  I  T  *  T  S  F  S  G  *  R  *  S  R  E  S  G  S  *   : D  T  D  F  L  L  C  E  D  S  S  F  *  R  V  P  P  S  E   : G  S  Y  I  A  G  S  T  S  S  N  *  P  S  S  C  S  T  C  Y  T  Y  S  Y  C  A  E  N  I  S  R  D  *  C  R  *  C  T  I  C  *  F  H  F  F  S  *  P  A  *  P  P  S  P  P  H  R  A  F  L  *  D  Q  *  *  *  *  S  Q  S  F  C  S  F  S  T  I  *  *  R  K  R  P  K  G  *  S  N  N  Y  I  T  D  R  *  *  H  K  W  Q  A  I  N  S  R  *  K  G  S  R  *  G  L  I  S  I  K  C  E  W  *  F  K  S  S  N  F  T  I  R  W  K  I  T  K  T  R  I  Y  Q  S  S  *  K  Q  L  *  E  K  P  S  C  W  R  P  P  G  V  D  I  R  Y  Q  H  *  E  D  R  C  S  V  F  C  F  T  G  T  T  R  Y  R  K  I  N  F  F  S  T  F  F  S  W  K  A  H  V  R  R  Q  H  C  S  W  C  C  T  G  R  V  K  T  N  T  S  N  *  G  G  R  N  D  S  T  F  S  L  G  I  K  R  V  S  C  L  P  E  W  *  *  L  N  Q  L  K  Q  R  *  D  G  R  *  D  A  R  S  S  K  H  T  K  Y  I  K  *  T  K  R  T  R  K  V  I  I  *  R  L  S  N  V  Q  *  C  A  K  A  I  F  L  E  L  A  L  C  T  L  *  M  F  F  S  *  N  L  F  Y  Y  I  *  L  W  S  I  S  W  L  V  F  S  I  W  *  *  S  M  *  T  Q  *  Y  H  *  L  L  A  *  G  L  V  *  P  S  T  I  F  S  L  Q  F  N  C  T  V  L  P  * </first_frame>
            <second_frame>  F  F  K  *  S  C  F  T  N  I  I  D  C  I  G  F  Q  :  V  Q  K  I  *  R  F  L  P  Y  A  I  *  H  C  D  F  W  V  S  F  L  *  A  Y  *  K  M  A  V  S  V  S  L  L  L  P  R  E  L  G  I  H  G  K  C  G  L  S  G  Q  S  K  :  G  K  M  S  R  S  Q  T  D  S  C  S  I  F  L  S  S  H  S  M  :  R  Q  D  P  W  S  I  Y  L  L  N  T  V  H  R  P  L  F  S  H  P  S  P  T  R  C  N  V  L  L  C  R  S  L  L  K  P  G  G  G  Y  E  S  Q  V  L  E  T  A  T  L  I  W  K  R :   S  L  S  T  I  H  G  S  P  L  V  L  Q  L  I  P  A  I  G  V  L  V  F  A  A  W  G  L  T  P  L  M  R  F  G  R  K  L  F  L  H  :  E  S  D  S  N  W  K  Q  S  S  W  H  Y  V  T  A  S  Y  L  K  P  V  L  L  W  T  G  A  I  L  I  C  R :   A  I  D  P  L  V  L  P  T  V  S  S  Q  A  V  K  Q  R  F  L  N  F  I  R  S  L  S  T  V  M  A  L  A  Y  C  L  S  S :   L  I  Q  Q  T  Q  K  F  L  V  E  T  K  D  P  A  D  A  R  N  :  M  G  F  E  F  A  G  K  A  I  Y  T  A  V  W  V  A  A  V  S  L  F  M  E  L  L  G  F  S  T  Q  K  W  L  T  A  G  G  L  G  T  V  L  L  T  L  A  G  R  E  :  I  L  T  N  F  L  S  S  I  M  I  H  A  T  R  P  F  V  L  N  D  W  I  Q  T  K  I  Q  G  Y  D  V  S  G  T  V  E  :  H  V  G  W  W  S  P  T  V  I  R  G  D  D  R  E  A  I  H  I  P  N  H  K  F  S  V  N  I  V  R  N  L  T  Q  R  T  H  W  R  I  K  T  H  L  A  I  S  H  L  D  V  N  K  I  N  :  N  I  V  A  D  M  R  K  V  L  S  K  H  P  M  V  E  Q  Q  R  L  H  R  R  V  F  L  D  N  V  D  P  E  N  Q  A  L  K  :  I  L  I  S  C  F  V  K  T  P  R  F  E  E  Y  L  R  V  K  :  E  V  I  L  L  D  L  L  R  V  I  S  H  H  R  A  R  L  A  T  P  I  R  T  V  Q  K  T  S  R  E  I  D  A  D  D  V  P  F  A  D  S  I  F  S  R  N  R  P  N  R  Q  V  L  L  I  E  P  S  Y  K  I  S  S  D  D  K  A  K  A  S  A  R  S  V  Q  S  D  E  E  K  D  Q  K  V  E  A  T  I  T  S  R  T  A  D  D  T  N  G  K  P  S  T  L  V  E  K  E  V  D  K  A  S  S  A  S  N  A  N  G  D  L  K  A  A  T  S  P  S  D  G  K  S  L  K  Q  G  S  T  S  P  V  K  S  N  S  E  K  N  Q  V  A  G  D  P  P  G  L  T  S  D  T  N  I  E  K  T  D  A  A  S  S  A  S  Q  A  Q  Q  D  T  E  R  S  I  S  S  P  P  S  S  V  G  R  P  M  L  E  D  N  I  V  L  G  V  A  L  E  G  S  K  L  T  L  P  I  E  E  D  E  T  T  P  P  S  P  S  E  S  K  E  L  A  A  C  R  N  G  N  S  S  T  N  S  N  K  D  K  T  D  D  K  M  P  G  A  P  S  T  Q  S  T  S  N  E  Q  K  E  R  E  R  *  L  F  E  G  *  A  M  C  N  N  A  L  R  L  F  F  *  S  L  H  C  A  H  C  K  C  F  S  H  E  I  Y  F  I  I  Y  N  C  G  A  L  V  G  L  Y  L  A  F  G  N  D  Q  C  R  H  N  N  T  T  N  F  *  L  K  A  W  S  N  H  P  P  S  L  A  C  N  S  I  V  L  F  Y  H   </second_frame>
            <third_frame>   F  S  S  E  V  A  S  L  I  S  S  I  V  L  V  F  R :   F  R  R  Y  K  G  S  Y  H  M  Q  F  N  I  V  T  F  G  C  H  F  F  K  H  I  R  K  W  Q  F  L  C  H  C  C  C  P  V  N  W  V  F  T  E  N  V  D  *  A  V  S  L  R :   A  R  *  A  G  V  R  Q  I  L  A  A  Y  F  C  R  H  I  L  C :   G  R  I  L  G  A  S  T  F  *  I  L  Y  T  G  L  C  F  P  I  L  H  Q  L  D  V  M  Y  Y  Y  A  A  P  C  *  S  Q  V  E  D  M  R  V  K  F  W  K  Q  Q  H  *  F  G  K   : G  H  *  V  L  Y  M  E  A  H  L  C  F  S  *  F  R  P  L  V  F  L  F  L  L  H  G  V  S  L  H  *  C  A  L  E  E  S  F  S  F  M :   K  V  I  A  I  G  N  R  V  A  G  I  M  L  Q  L  P  I  L  N  L  C  F  Y  G  L  E  Q  Y  L  Y  A   : E  Q  *  I  H  W  F  Y  L  Q  F  L  A  R  Q  S  S  K  D  F  L  I  L  Y  D  H  Y  R  Q  *  W  H  L  P  T  V  Y  L   : A  *  F  S  K  H  K  N  S  S  W  R  Q  K  T  L  L  M  Q  E  I :   W  G  S  N  L  Q  G  K  L  Y  I  L  Q  Y  G  L  L  P  F  H  C  S  W  N  C  L  V  F  L  H  R  S  G  *  Q  L  G  V  L  G  Q  Y  C  S  L  L  L  V  V  R :   Y  L  Q  T  S  S  R  A  *  *  S  M  Q  Q  G  P  L  F  *  M  T  G  Y  R  L  R  Y  R  D  M  M  S  L  A  Q  W  S :   T  *  V  G  G  H  L  Q  S  *  E  V  M  I  V  K  Q  F  I  Y  Q  I  T  N  F  Q  *  I  S  S  G  I  L  L  R  G  L  T  G  G  S  R  L  I  L  P  S  A  T  W  M  *  I  R  S  T :   T  L  L  R  I  C  G  R  F  C  Q  N  I  L  W  W  N  S  N  D  Y  I  D  E  F  F  W  I  T  L  I  Q  R  I  R  L  L  R :   Y  *  F  L  A  L  *  R  L  L  V  L  K  S  T  S  E  *  R :   K  L  Y  C  W  I  Y  F  E  *  L  A  I  I  V  L  D  L  L  H  L  F  V  L  C  R  K  H  L  A  R  L  M  Q  M  M  Y  H  L  L  I  P  F  F  L  V  T  G  L  T  A  K  S  S  S  S  S  L  L  I  R  S  V  V  M  I  K  P  K  L  L  L  V  Q  Y  N  L  M  K  K  K  T  K  R  L  K  Q  Q  L  H  H  G  P  L  M  T  Q  M  A  S  H  Q  L  S  L  K  R  K  S  I  R  P  H  Q  H  Q  M  R  M  V  I  *  K  Q  Q  L  H  H  Q  M  E  N  H  *  N  K  D  L  P  V  Q  L  K  A  T  L  R  K  T  K  L  L  E  T  P  R  G  *  H  Q  I  P  T  L  R  R  Q  M  Q  R  L  L  L  H  R  H  N  K  I  P  K  D  Q  F  L  L  H  L  L  Q  L  E  G  P  C  *  K  T  T  L  F  L  V  L  H  W  K  G  Q  N  *  H  F  Q  L  R  R  T  K  R  L  H  L  L  P  R  N  Q  K  S  *  L  P  A  G  M  V  I  A  Q  P  T  Q  T  K  I  R  R  T  I  R  C  Q  E  L  Q  A  H  K  V  H  Q  M  N  K  K  N  A  K  G  D  Y  L  K  V  E  Q  C  A  I  M  R  *  G  Y  F  F  R  A  C  I  V  H  T  V  N  V  F  L  M  K  F  I  L  L  Y  I  I  V  E  H  *  L  A  C  I  *  H  L  V  M  I  N  V  D  T  I  I  P  L  T  F  S  L  R  L  G  L  T  I  H  H  L  *  L  A  I  Q  L  Y  C  S  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92577" stop="92497"/>
                    <exon start="92374" stop="92315"/>
                    <exon start="91281" stop="91118"/>
                    <exon start="90745" stop="90622"/>
                    <exon start="90520" stop="90423"/>
                    <exon start="90331" stop="90218"/>
                    <exon start="90032" stop="89972"/>
                    <exon start="89480" stop="89331"/>
                    <exon start="89135" stop="89025"/>
                    <exon start="88548" stop="88381"/>
                    <exon start="88279" stop="88166"/>
                    <exon start="87284" stop="87228"/>
                    <exon start="86604" stop="85792"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>2112</number_coding_nucleotides>
                  <number_encoded_amino_acids>704</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KMAVSVSLLLPRELGIHGKCGLSGQSKGKMSRSQTDSCSIFLSSHSMRQDPWSIYLLNTVHRPLFSHPSPTRCNVLLCRSLLKPGGGYESQVLETATLIWKRSLSTIHGSPLVLQLIPAIGVLVFAAWGLTPLMRFGRKLFLHESDSNWKQSSWHYVTASYLKPVLLWTGAILICRAIDPLVLPTVSSQAVKQRFLNFIRSLSTVMALAYCLSSLIQQTQKFLVETKDPADARNMGFEFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREILTNFLSSIMIHATRPFVLNDWIQTKIQGYDVSGTVEHVGWWSPTVIRGDDREAIHIPNHKFSVNIVRNLTQRTHWRIKTHLAISHLDVNKINNIVADMRKVLSKHPMVEQQRLHRRVFLDNVDPENQALKILISCFVKTPRFEEYLRVKEVILLDLLRVISHHRARLATPIRTVQKTSREIDADDVPFADSIFSRNRPNRQVLLIEPSYKISSDDKAKASARSVQSDEEKDQKVEATITSRTADDTNGKPSTLVEKEVDKASSASNANGDLKAATSPSDGKSLKQGSTSPVKSNSEKNQVAGDPPGLTSDTNIEKTDAASSASQAQQDTERSISSPPSSVGRPMLEDNIVLGVALEGSKLTLPIEEDETTPPSPSESKELAACRNGNSSTNSNKDKTDDKMPGAPSTQSTSNEQKERER*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="88447" e_stop="88381"/>
            <exon e_start="88279" e_stop="88166"/>
            <exon e_start="87284" e_stop="87228"/>
            <exon e_start="87156" e_stop="87023"/>
            <exon e_start="86604" e_stop="86120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.915" e_score="0.985"/>
          <exon-intron don_prob="0.773" acc_prob="0.933" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.587" e_score="1.000"/>
          <exon-intron don_prob="0.820" acc_prob="0.957" e_score="0.993"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.985">
            <gDNA_exon_boundary e_start="88447" e_stop="88381" e_length="67"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.915">
            <gDNA_intron_boundary i_start="88380" i_stop="88280" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="88279" e_stop="88166" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.773" acc_prob="0.933">
            <gDNA_intron_boundary i_start="88165" i_stop="87285" i_length="881"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="87284" e_stop="87228" e_length="57"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.587">
            <gDNA_intron_boundary i_start="87227" i_stop="87157" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="0.993">
            <gDNA_exon_boundary e_start="87156" e_stop="87023" e_length="134"/>
          </exon>
          <intron i_serial="4" don_prob="0.820" acc_prob="0.957">
            <gDNA_intron_boundary i_start="87022" i_stop="86605" i_length="418"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="86604" e_stop="86120" e_length="485"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88447" stop="88381"/>
              <exon start="88279" stop="88166"/>
              <exon start="87284" stop="87228"/>
              <exon start="87156" stop="87023"/>
              <exon start="86604" stop="86120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321323" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGAGGACTCACTGGCGGATCAAGACTCATCTTGCCATCAGCCACTTGGATGTGAATAAGATCAAC : AACATTGTTGCGGATATGCGGAAGGTTTTGTCAAAACATCCTATGGTGGAACAGCAACGATTACATAGACGAGTTTTTCTGGATAACGTTGATCCAGAGAATCAGGCTCTTAAG : ATACTGATTTCTTGCTTTGTGAAGACTCCTCGTTTTGAAGAGTACCTCCGAGTGAAG : TACTGCTAGTTAACCAACCGCCACAACTTAATCAATTTATACTTGGTCATGTATAAGCTCTTTCACTTGGTGCCCTGATTGTAGATGATGCACATTCTATATGCTTTATGCATTCACTGTCCCGTCTGTCCTCT : GAAGTTATATTGCTGGATCTACTTCGAGTAATTAGCCATCATCGTGCTCGACTTGCTACACCTATTCGTACTGTGCAGAAAACATCTCGCGAGATTGATGCAGATGATGTACCATTTGCTGATTCCATTTTTTCTCGTAACCGGCCTAACCGCCAAGTCCTCCTCATCGAGCCTTCTTATAAGATCAGTAGTGATGATAAAGCCAAAGCTTCTGCTCGTTCAGTACAATCTGATGAAGAAAAAGACCAAAAGGTTGAAGCAACAATTACATCACGGACCGCTGATGACACAAATGGCAAGCCATCAACTCTCGTTGAAAAGGAAGTCGATAAGGCCTCATCAGCATCAAATGCGAATGGTGATTTAAAAGCAGCAACTTCACCATCAGATGGAAAATCACTAAAACAAGGATCTACCAGTCCAGTTAAAAGCAACTCTGAGAAAAACCAAGTTGCTGGAGACCCCCCGGGGTTGACATCAGATAC</gDNA_template>
            <first_frame> S  E  D  S  L  A  D  Q  D  S  S  C  H  Q  P  L  G  C  E  *  D  Q   : Q  H  C  C  G  Y  A  E  G  F  V  K  T  S  Y  G  G  T  A  T  I  T  *  T  S  F  S  G  *  R  *  S  R  E  S  G  S  *   : D  T  D  F  L  L  C  E  D  S  S  F  *  R  V  P  P  S  E   : V  L  L  V  N  Q  P  P  Q  L  N  Q  F  I  L  G  H  V  *  A  L  S  L  G  A  L  I  V  D  D  A  H  S  I  C  F  M  H  S  L  S  R  L  S  S  :  E  V  I  L  L  D  L  L  R  V  I  S  H  H  R  A  R  L  A  T  P  I  R  T  V  Q  K  T  S  R  E  I  D  A  D  D  V  P  F  A  D  S  I  F  S  R  N  R  P  N  R  Q  V  L  L  I  E  P  S  Y  K  I  S  S  D  D  K  A  K  A  S  A  R  S  V  Q  S  D  E  E  K  D  Q  K  V  E  A  T  I  T  S  R  T  A  D  D  T  N  G  K  P  S  T  L  V  E  K  E  V  D  K  A  S  S  A  S  N  A  N  G  D  L  K  A  A  T  S  P  S  D  G  K  S  L  K  Q  G  S  T  S  P  V  K  S  N  S  E  K  N  Q  V  A  G  D  P  P  G  L  T  S  D   </first_frame>
            <second_frame>  Q  R  T  H  W  R  I  K  T  H  L  A  I  S  H  L  D  V  N  K  I  N  :  N  I  V  A  D  M  R  K  V  L  S  K  H  P  M  V  E  Q  Q  R  L  H  R  R  V  F  L  D  N  V  D  P  E  N  Q  A  L  K  :  I  L  I  S  C  F  V  K  T  P  R  F  E  E  Y  L  R  V  K  :  Y  C  *  L  T  N  R  H  N  L  I  N  L  Y  L  V  M  Y  K  L  F  H  L  V  P  *  L  *  M  M  H  I  L  Y  A  L  C  I  H  C  P  V  C  P  L :   K  L  Y  C  W  I  Y  F  E  *  L  A  I  I  V  L  D  L  L  H  L  F  V  L  C  R  K  H  L  A  R  L  M  Q  M  M  Y  H  L  L  I  P  F  F  L  V  T  G  L  T  A  K  S  S  S  S  S  L  L  I  R  S  V  V  M  I  K  P  K  L  L  L  V  Q  Y  N  L  M  K  K  K  T  K  R  L  K  Q  Q  L  H  H  G  P  L  M  T  Q  M  A  S  H  Q  L  S  L  K  R  K  S  I  R  P  H  Q  H  Q  M  R  M  V  I  *  K  Q  Q  L  H  H  Q  M  E  N  H  *  N  K  D  L  P  V  Q  L  K  A  T  L  R  K  T  K  L  L  E  T  P  R  G  *  H  Q  I  </second_frame>
            <third_frame>   R  G  L  T  G  G  S  R  L  I  L  P  S  A  T  W  M  *  I  R  S  T :   T  L  L  R  I  C  G  R  F  C  Q  N  I  L  W  W  N  S  N  D  Y  I  D  E  F  F  W  I  T  L  I  Q  R  I  R  L  L  R :   Y  *  F  L  A  L  *  R  L  L  V  L  K  S  T  S  E  *  S :   T  A  S  *  P  T  A  T  T  *  S  I  Y  T  W  S  C  I  S  S  F  T  W  C  P  D  C  R  *  C  T  F  Y  M  L  Y  A  F  T  V  P  S  V  L   : *  S  Y  I  A  G  S  T  S  S  N  *  P  S  S  C  S  T  C  Y  T  Y  S  Y  C  A  E  N  I  S  R  D  *  C  R  *  C  T  I  C  *  F  H  F  F  S  *  P  A  *  P  P  S  P  P  H  R  A  F  L  *  D  Q  *  *  *  *  S  Q  S  F  C  S  F  S  T  I  *  *  R  K  R  P  K  G  *  S  N  N  Y  I  T  D  R  *  *  H  K  W  Q  A  I  N  S  R  *  K  G  S  R  *  G  L  I  S  I  K  C  E  W  *  F  K  S  S  N  F  T  I  R  W  K  I  T  K  T  R  I  Y  Q  S  S  *  K  Q  L  *  E  K  P  S  C  W  R  P  P  G  V  D  I  R  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87100" stop="87023"/>
                    <exon start="86604" stop="86122"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>561</number_coding_nucleotides>
                  <number_encoded_amino_acids>187</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALSLGALIVDDAHSICFMHSLSRLSSEVILLDLLRVISHHRARLATPIRTVQKTSREIDADDVPFADSIFSRNRPNRQVLLIEPSYKISSDDKAKASARSVQSDEEKDQKVEATITSRTADDTNGKPSTLVEKEVDKASSASNANGDLKAATSPSDGKSLKQGSTSPVKSNSEKNQVAGDPPGLTSD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88446" stop="88381"/>
                    <exon start="88279" stop="88166"/>
                    <exon start="87284" stop="87228"/>
                    <exon start="87156" stop="87148"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRTHWRIKTHLAISHLDVNKINNIVADMRKVLSKHPMVEQQRLHRRVFLDNVDPENQALKILISCFVKTPRFEEYLRVKYC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="107342" PGL_stop="109334"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="107342" e_stop="107571"/>
            <exon e_start="107663" e_stop="107828"/>
            <exon e_start="108055" e_stop="108153"/>
            <exon e_start="108986" e_stop="109029"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.970" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.955"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="107342" e_stop="107571" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.970" acc_prob="0.997">
            <gDNA_intron_boundary i_start="107572" i_stop="107662" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107663" e_stop="107828" e_length="166"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.998">
            <gDNA_intron_boundary i_start="107829" i_stop="108054" i_length="226"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="108055" e_stop="108153" e_length="99"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="108154" i_stop="108985" i_length="832"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="108986" e_stop="109029" e_length="44"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="107342" stop="107571"/>
              <exon start="107663" stop="107828"/>
              <exon start="108055" stop="108153"/>
              <exon start="108986" stop="109029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U345234" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGTGATTTCCCCCAGAAAATGTCTCCGGGTGCAAGAAATTCCAGGATATTTGCGCTTGAAAACATGCTTGCCACTTCATCTAGCACACTTGTCTCCATGGCATCACAGTTATCGGAAGCAGAAGAGCGTGAACGCGCCTTTAGTGGTAGGGGCAGATGGAACCAAGTCCGATCTCTTGCTGATGCAAAAAATATTATGAACTTTTTATTGAACCTTGCATCATCTTCTAG : ATGCCAGCTAAGGGATAGGGAAGTTGAATGCAGAGAGAAGGATGCTGAAATCAGGGAGCTGAAGGAAAAACTCGTAAATTTTGTCAGACAGATAGAGTTGCAAAAGAGTGAATTGAGACAGCTAGAGTCGCAAAACAGTGAACTGATTCAGCAGGAGAAGTTGATG : AAATTGGCTTTAGAACACCCCATTGAAAGGACAAACAACTCTGGCTCTAATGAGATAAGAAGCAGCACTGACGGGCATGATTATGACCTGAGGCAAAAG : AGGAACTCCGAGACTTATGATTCAGTTGTTGACTTGGCGATACA</gDNA_template>
            <first_frame> S  D  F  P  Q  K  M  S  P  G  A  R  N  S  R  I  F  A  L  E  N  M  L  A  T  S  S  S  T  L  V  S  M  A  S  Q  L  S  E  A  E  E  R  E  R  A  F  S  G  R  G  R  W  N  Q  V  R  S  L  A  D  A  K  N  I  M  N  F  L  L  N  L  A  S  S  S  R :   C  Q  L  R  D  R  E  V  E  C  R  E  K  D  A  E  I  R  E  L  K  E  K  L  V  N  F  V  R  Q  I  E  L  Q  K  S  E  L  R  Q  L  E  S  Q  N  S  E  L  I  Q  Q  E  K  L  M  :  K  L  A  L  E  H  P  I  E  R  T  N  N  S  G  S  N  E  I  R  S  S  T  D  G  H  D  Y  D  L  R  Q  K  :  R  N  S  E  T  Y  D  S  V  V  D  L  A  I   </first_frame>
            <second_frame>  V  I  S  P  R  K  C  L  R  V  Q  E  I  P  G  Y  L  R  L  K  T  C  L  P  L  H  L  A  H  L  S  P  W  H  H  S  Y  R  K  Q  K  S  V  N  A  P  L  V  V  G  A  D  G  T  K  S  D  L  L  L  M  Q  K  I  L  *  T  F  Y  *  T  L  H  H  L  L   : D  A  S  *  G  I  G  K  L  N  A  E  R  R  M  L  K  S  G  S  *  R  K  N  S  *  I  L  S  D  R  *  S  C  K  R  V  N  *  D  S  *  S  R  K  T  V  N  *  F  S  R  R  S  *  * :   N  W  L  *  N  T  P  L  K  G  Q  T  T  L  A  L  M  R  *  E  A  A  L  T  G  M  I  M  T  *  G  K  R :   G  T  P  R  L  M  I  Q  L  L  T  W  R  Y  </second_frame>
            <third_frame>   *  F  P  P  E  N  V  S  G  C  K  K  F  Q  D  I  C  A  *  K  H  A  C  H  F  I  *  H  T  C  L  H  G  I  T  V  I  G  S  R  R  A  *  T  R  L  *  W  *  G  Q  M  E  P  S  P  I  S  C  *  C  K  K  Y  Y  E  L  F  I  E  P  C  I  I  F  *  :  M  P  A  K  G  *  G  S  *  M  Q  R  E  G  C  *  N  Q  G  A  E  G  K  T  R  K  F  C  Q  T  D  R  V  A  K  E  *  I  E  T  A  R  V  A  K  Q  *  T  D  S  A  G  E  V  D   : E  I  G  F  R  T  P  H  *  K  D  K  Q  L  W  L  *  *  D  K  K  Q  H  *  R  A  *  L  *  P  E  A  K   : E  E  L  R  D  L  *  F  S  C  *  L  G  D  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="107342" stop="107571"/>
                    <exon start="107663" stop="107828"/>
                    <exon start="108055" stop="108153"/>
                    <exon start="108986" stop="109027"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDFPQKMSPGARNSRIFALENMLATSSSTLVSMASQLSEAEERERAFSGRGRWNQVRSLADAKNIMNFLLNLASSSRCQLRDREVECREKDAEIRELKEKLVNFVRQIELQKSELRQLESQNSELIQQEKLMKLALEHPIERTNNSGSNEIRSSTDGHDYDLRQKRNSETYDSVVDLAI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="108766" e_stop="109334"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="108766" e_stop="109334" e_length="569"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108766" stop="109334"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343884" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAACGGAAGCAATGGCGGAAATCAACTATTCAACTTGTTCCTACTACCCCAATGACTCAAGCAAGTAATGCAGAAGCCCCAACAAAAACATCTCAATCAGTCAATGCTGATGCATCAGTAAAAACAGAAAACAAGGTTGGTGAGATTGATACTCCTGCATTAAAATTACCCAGAGCGATGCGTTCTGCATCAACAAACGGAAACAACACCTTAAGAGAAAGGAACTCCGAGACTTATGATTCAGTTGTTGACTTGGCGATACATCCAGCTCCTAAGAGTCCTCTACGGAAGACGAAGGTAAAGGAGGAGAAAGAAAATTGAGAAGCATGATTTCCATTTGTTTGATCCAAATTGTATGTATAGAGGTTTGGTCTTGGCTGTTCTGCCACTGGATTTTTGTATGGCTAATCTTTTCTAACCTTAAAAAGAGGTGCCTCAATTGATCATAGATCCTGAAAGTATTAGGATACTAGAGTCTGGAGGCTCTAATCTGAAGAGCATCTCTGTTGTAATTCTTCAAAAACTTTTCCAATATTTAGTGAAATTGATTGTTTTTCGGTGCATACAA</gDNA_template>
            <first_frame> S  T  E  A  M  A  E  I  N  Y  S  T  C  S  Y  Y  P  N  D  S  S  K  *  C  R  S  P  N  K  N  I  S  I  S  Q  C  *  C  I  S  K  N  R  K  Q  G  W  *  D  *  Y  S  C  I  K  I  T  Q  S  D  A  F  C  I  N  K  R  K  Q  H  L  K  R  K  E  L  R  D  L  *  F  S  C  *  L  G  D  T  S  S  S  *  E  S  S  T  E  D  E  G  K  G  G  E  R  K  L  R  S  M  I  S  I  C  L  I  Q  I  V  C  I  E  V  W  S  W  L  F  C  H  W  I  F  V  W  L  I  F  S  N  L  K  K  R  C  L  N  *  S  *  I  L  K  V  L  G  Y  *  S  L  E  A  L  I  *  R  A  S  L  L  *  F  F  K  N  F  S  N  I  *  *  N  *  L  F  F  G  A  Y   </first_frame>
            <second_frame>  Q  R  K  Q  W  R  K  S  T  I  Q  L  V  P  T  T  P  M  T  Q  A  S  N  A  E  A  P  T  K  T  S  Q  S  V  N  A  D  A  S  V  K  T  E  N  K  V  G  E  I  D  T  P  A  L  K  L  P  R  A  M  R  S  A  S  T  N  G  N  N  T  L  R  E  R  N  S  E  T  Y  D  S  V  V  D  L  A  I  H  P  A  P  K  S  P  L  R  K  T  K  V  K  E  E  K  E  N  *  E  A  *  F  P  F  V  *  S  K  L  Y  V  *  R  F  G  L  G  C  S  A  T  G  F  L  Y  G  *  S  F  L  T  L  K  R  G  A  S  I  D  H  R  S  *  K  Y  *  D  T  R  V  W  R  L  *  S  E  E  H  L  C  C  N  S  S  K  T  F  P  I  F  S  E  I  D  C  F  S  V  H  T  </second_frame>
            <third_frame>   N  G  S  N  G  G  N  Q  L  F  N  L  F  L  L  P  Q  *  L  K  Q  V  M  Q  K  P  Q  Q  K  H  L  N  Q  S  M  L  M  H  Q  *  K  Q  K  T  R  L  V  R  L  I  L  L  H  *  N  Y  P  E  R  C  V  L  H  Q  Q  T  E  T  T  P  *  E  K  G  T  P  R  L  M  I  Q  L  L  T  W  R  Y  I  Q  L  L  R  V  L  Y  G  R  R  R  *  R  R  R  K  K  I  E  K  H  D  F  H  L  F  D  P  N  C  M  Y  R  G  L  V  L  A  V  L  P  L  D  F  C  M  A  N  L  F  *  P  *  K  E  V  P  Q  L  I  I  D  P  E  S  I  R  I  L  E  S  G  G  S  N  L  K  S  I  S  V  V  I  L  Q  K  L  F  Q  Y  L  V  K  L  I  V  F  R  C  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108767" stop="109087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QRKQWRKSTIQLVPTTPMTQASNAEAPTKTSQSVNADASVKTENKVGEIDTPALKLPRAMRSASTNGNNTLRERNSETYDSVVDLAIHPAPKSPLRKTKVKEEKEN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="113527" PGL_stop="112792"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113527" e_stop="113224"/>
            <exon e_start="113054" e_stop="112792"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="113527" e_stop="113224" e_length="304"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.999">
            <gDNA_intron_boundary i_start="113223" i_stop="113055" i_length="169"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="113054" e_stop="112792" e_length="263"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113527" stop="113224"/>
              <exon start="113054" stop="112792"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U344006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCTTTGACAACTTCCCCCATTTTCTCTTCATCCAAACACGCCCTTACTCCTAAACCCCAAAGCCTCTCTTTCAACTCCAATGCTCGTTTAGTATTGTTCACCTGTGCAGCGCAGCAGATGAATTCACCACCCTCTACGGCGGCGACGACGGCGGAAAAGGAAGTGAAGCTATGGGGTGGCCGTTTCGAAGAGAGCGTTACCGATGCTGTGGAGAAGTTCACTGAGTCCATTTCGTTTGATAAAGCTCTCTATAAACAGGATATCATGGGTAGTAAAGCTCATGCTTCAATGCTTGCTAAACAG : GGATTGATGAGTGATATTGATAGAGATACTATCATAAAAGGTCTTGAAGAGATAGAGAGGCAAATTGAGGCAGGTGAATTTGTATGGAGAACAGATAGAGAGGATGTGCATATGAATATTGAAGCAGCACTTACTGATTTGGTTGGTGAACCTGCCAAAAAGCTTCACACTGCCCGGAGTAGAAATGATCAGGTTGCAACTGATTTTCGCTTGTGGTGTCGTGATGCTATTGACGGAATCATTTCATGCATTAAGAATCTTCA</gDNA_template>
            <first_frame> F  F  D  N  F  P  H  F  L  F  I  Q  T  R  P  Y  S  *  T  P  K  P  L  F  Q  L  Q  C  S  F  S  I  V  H  L  C  S  A  A  D  E  F  T  T  L  Y  G  G  D  D  G  G  K  G  S  E  A  M  G  W  P  F  R  R  E  R  Y  R  C  C  G  E  V  H  *  V  H  F  V  *  *  S  S  L  *  T  G  Y  H  G  *  *  S  S  C  F  N  A  C  *  T   : G  I  D  E  *  Y  *  *  R  Y  Y  H  K  R  S  *  R  D  R  E  A  N  *  G  R  *  I  C  M  E  N  R  *  R  G  C  A  Y  E  Y  *  S  S  T  Y  *  F  G  W  *  T  C  Q  K  A  S  H  C  P  E  *  K  *  S  G  C  N  *  F  S  L  V  V  S  *  C  Y  *  R  N  H  F  M  H  *  E  S  S </first_frame>
            <second_frame>  S  L  T  T  S  P  I  F  S  S  S  K  H  A  L  T  P  K  P  Q  S  L  S  F  N  S  N  A  R  L  V  L  F  T  C  A  A  Q  Q  M  N  S  P  P  S  T  A  A  T  T  A  E  K  E  V  K  L  W  G  G  R  F  E  E  S  V  T  D  A  V  E  K  F  T  E  S  I  S  F  D  K  A  L  Y  K  Q  D  I  M  G  S  K  A  H  A  S  M  L  A  K  Q  :  G  L  M  S  D  I  D  R  D  T  I  I  K  G  L  E  E  I  E  R  Q  I  E  A  G  E  F  V  W  R  T  D  R  E  D  V  H  M  N  I  E  A  A  L  T  D  L  V  G  E  P  A  K  K  L  H  T  A  R  S  R  N  D  Q  V  A  T  D  F  R  L  W  C  R  D  A  I  D  G  I  I  S  C  I  K  N  L   </second_frame>
            <third_frame>   L  *  Q  L  P  P  F  S  L  H  P  N  T  P  L  L  L  N  P  K  A  S  L  S  T  P  M  L  V  *  Y  C  S  P  V  Q  R  S  R  *  I  H  H  P  L  R  R  R  R  R  R  K  R  K  *  S  Y  G  V  A  V  S  K  R  A  L  P  M  L  W  R  S  S  L  S  P  F  R  L  I  K  L  S  I  N  R  I  S  W  V  V  K  L  M  L  Q  C  L  L  N  R :   D  *  *  V  I  L  I  E  I  L  S  *  K  V  L  K  R  *  R  G  K  L  R  Q  V  N  L  Y  G  E  Q  I  E  R  M  C  I  *  I  L  K  Q  H  L  L  I  W  L  V  N  L  P  K  S  F  T  L  P  G  V  E  M  I  R  L  Q  L  I  F  A  C  G  V  V  M  L  L  T  E  S  F  H  A  L  R  I  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="113526" stop="113224"/>
                    <exon start="113054" stop="112794"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLTTSPIFSSSKHALTPKPQSLSFNSNARLVLFTCAAQQMNSPPSTAATTAEKEVKLWGGRFEESVTDAVEKFTESISFDKALYKQDIMGSKAHASMLAKQGLMSDIDRDTIIKGLEEIERQIEAGEFVWRTDREDVHMNIEAALTDLVGEPAKKLHTARSRNDQVATDFRLWCRDAIDGIISCIKNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="126197" PGL_stop="129767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126197" e_stop="126431"/>
            <exon e_start="127693" e_stop="127988"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126197" e_stop="126431" e_length="235"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="126432" i_stop="127692" i_length="1261"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127693" e_stop="127988" e_length="296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126197" stop="126431"/>
              <exon start="127693" stop="127988"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U336646" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATCTCTGCTCAGCTCTTATGTTTTATAGCTGTTTTTATAGTTATTTTTAATAATCAATTTTTCTGGTTCGGTGGTTGAATTATTGAAAACTATGTAACAAAAATCTCTTATCCCTCTAATTTTTAGATGTTTTTTTTCAGATTAAAGAGCAAAAAACAAGAATTGGGGTTATGAGTTCTTGATGTAAATTGTGGGATTTGCACAATTTTTGGTTTTATTTTTGAGTTTCCAAG : AATCTTGATACATTCGTCTGACTCTGTGTCCGGTGCTGTATTGGATAAGTTTCTGGATATAGGAAGAAATGGCCATGACATTTACCCCCTTGTCATGGTTGCTCTGGAGTGGAAAGCATCAAGAACCCAAAATTTCCAATGGTTCTTTAAATTCATCACCTGAATCGTTATTGTGGGAATCGGATACTTTGAAGTTTCCTCTTGATCGCAGGAGGGACATGACTTCCTCATCAAGAAGGGTTAAGCGGAAATGGCAGAGTCGTGAGGAACGAAAGATTGACAGGGAATATGATATT</gDNA_template>
            <first_frame> K  S  L  L  S  S  Y  V  L  *  L  F  L  *  L  F  L  I  I  N  F  S  G  S  V  V  E  L  L  K  T  M  *  Q  K  S  L  I  P  L  I  F  R  C  F  F  S  D  *  R  A  K  N  K  N  W  G  Y  E  F  L  M  *  I  V  G  F  A  Q  F  L  V  L  F  L  S  F  Q   : E  S  *  Y  I  R  L  T  L  C  P  V  L  Y  W  I  S  F  W  I  *  E  E  M  A  M  T  F  T  P  L  S  W  L  L  W  S  G  K  H  Q  E  P  K  I  S  N  G  S  L  N  S  S  P  E  S  L  L  W  E  S  D  T  L  K  F  P  L  D  R  R  R  D  M  T  S  S  S  R  R  V  K  R  K  W  Q  S  R  E  E  R  K  I  D  R  E  Y  D  I </first_frame>
            <second_frame>  N  L  C  S  A  L  M  F  Y  S  C  F  Y  S  Y  F  *  *  S  I  F  L  V  R  W  L  N  Y  *  K  L  C  N  K  N  L  L  S  L  *  F  L  D  V  F  F  Q  I  K  E  Q  K  T  R  I  G  V  M  S  S  *  C  K  L  W  D  L  H  N  F  W  F  Y  F  *  V  S  K  :  N  L  D  T  F  V  *  L  C  V  R  C  C  I  G  *  V  S  G  Y  R  K  K  W  P  *  H  L  P  P  C  H  G  C  S  G  V  E  S  I  K  N  P  K  F  P  M  V  L  *  I  H  H  L  N  R  Y  C  G  N  R  I  L  *  S  F  L  L  I  A  G  G  T  *  L  P  H  Q  E  G  L  S  G  N  G  R  V  V  R  N  E  R  L  T  G  N  M  I   </second_frame>
            <third_frame>   I  S  A  Q  L  L  C  F  I  A  V  F  I  V  I  F  N  N  Q  F  F  W  F  G  G  *  I  I  E  N  Y  V  T  K  I  S  Y  P  S  N  F  *  M  F  F  F  R  L  K  S  K  K  Q  E  L  G  L  *  V  L  D  V  N  C  G  I  C  T  I  F  G  F  I  F  E  F  P  R :   I  L  I  H  S  S  D  S  V  S  G  A  V  L  D  K  F  L  D  I  G  R  N  G  H  D  I  Y  P  L  V  M  V  A  L  E  W  K  A  S  R  T  Q  N  F  Q  W  F  F  K  F  I  T  *  I  V  I  V  G  I  G  Y  F  E  V  S  S  *  S  Q  E  G  H  D  F  L  I  K  K  G  *  A  E  M  A  E  S  *  G  T  K  D  *  Q  G  I  *  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127755" stop="127988"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEMAMTFTPLSWLLWSGKHQEPKISNGSLNSSPESLLWESDTLKFPLDRRRDMTSSSRRVKRKWQSREERKIDREYDI</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="126373" stop="126431"/>
                    <exon start="127693" stop="127855"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLDVNCGICTIFGFIFEFPRILIHSSDSVSGAVLDKFLDIGRNGHDIYPLVMVALEWKASRTQNFQWFFKFIT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="126266" e_stop="126431"/>
            <exon e_start="127655" e_stop="128220"/>
            <exon e_start="129412" e_stop="129767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.856" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="126266" e_stop="126431" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.856">
            <gDNA_intron_boundary i_start="126432" i_stop="127654" i_length="1223"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="127655" e_stop="128220" e_length="566"/>
          </exon>
          <intron i_serial="2" don_prob="0.982" acc_prob="0.997">
            <gDNA_intron_boundary i_start="128221" i_stop="129411" i_length="1191"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="129412" e_stop="129767" e_length="356"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126266" stop="126431"/>
              <exon start="127655" stop="128220"/>
              <exon start="129412" stop="129767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGGTGGTTGAATTATTGAAAACTATGTAACAAAAATCTCTTATCCCTCTAATTTTTAGATGTTTTTTTTCAGATTAAAGAGCAAAAAACAAGAATTGGGGTTATGAGTTCTTGATGTAAATTGTGGGATTTGCACAATTTTTGGTTTTATTTTTGAGTTTCCAAG : GAACAAATCACTCATTTAGTGTTTCATTGAGGTTCCAGAATCTTGATACATTCGTCTGACTCTGTGTCCGGTGCTGTATTGGATAAGTTTCTGGATATAGGAAGAAATGGCCATGACATTTACCCCCTTGTCATGGTTGCTCTGGAGTGGAAAGCATCAAGAACCCAAAATTTCCAATGGTTCTTTAAATTCATCACCTGAATCGTTATTGTGGGAATCGGATACTTTGAAGTTTCCTCTTGATCGCAGGAGGGACATGACTTCCTCATCAAGAAGGGTTAAGCGGAAATGGCAGAGTCGTGAGGAACGAAAGATTGACAGGGAATATGATATTGTTATTGTGCCATCAGATGGTGGATGTGTTTCAGGGTCTGAGTCCGAGGATTCAGATTGGTCAGTTGGATGGTTGGAGCCTCATGGACCTGGATTCAATAGTGATGATGATTTAGATGATAGCTTTGCTGTGCTTGTTCCTTGCTATGGCTACGGTTGTGCAAATGTGGAAGAAAATGCCCAAGATAAGTTTCTGCAAGCCATTGGAAACTTGAAGGATTTATATGATACTG : AGAATAAGAAGTATATGGAGCACTGGGTCTCATCTCTGAGAGATCACTGAAATCCAGCAGCGCCTATGGTGCTGATCAGAACTTGTTTTCTGCTGCCTATCCTGATTCTATTTTGCAGTGGATCAAACTTGAGCTGTTATGGTTACTCATTACAAGCTTAGATATGAACTCTGTAGAAATATAAAGATATAATCCTACAACAAAACGAAAAAAAAAAGAGTGTGGAAATAATGTATATTCGTAGAAAGATGAGTGAGCTTGAAGGGCTTTAATATTTGAGGAGAAGAAACAGCAGACGATATAGGTATCTGCTGCTTCCAATCCACCTGATGCATCTCGAAAAGGAAAAAAAATGA</gDNA_template>
            <first_frame> S  V  V  E  L  L  K  T  M  *  Q  K  S  L  I  P  L  I  F  R  C  F  F  S  D  *  R  A  K  N  K  N  W  G  Y  E  F  L  M  *  I  V  G  F  A  Q  F  L  V  L  F  L  S  F  Q   : G  T  N  H  S  F  S  V  S  L  R  F  Q  N  L  D  T  F  V  *  L  C  V  R  C  C  I  G  *  V  S  G  Y  R  K  K  W  P  *  H  L  P  P  C  H  G  C  S  G  V  E  S  I  K  N  P  K  F  P  M  V  L  *  I  H  H  L  N  R  Y  C  G  N  R  I  L  *  S  F  L  L  I  A  G  G  T  *  L  P  H  Q  E  G  L  S  G  N  G  R  V  V  R  N  E  R  L  T  G  N  M  I  L  L  L  C  H  Q  M  V  D  V  F  Q  G  L  S  P  R  I  Q  I  G  Q  L  D  G  W  S  L  M  D  L  D  S  I  V  M  M  I  *  M  I  A  L  L  C  L  F  L  A  M  A  T  V  V  Q  M  W  K  K  M  P  K  I  S  F  C  K  P  L  E  T  *  R  I  Y  M  I  L  :  R  I  R  S  I  W  S  T  G  S  H  L  *  E  I  T  E  I  Q  Q  R  L  W  C  *  S  E  L  V  F  C  C  L  S  *  F  Y  F  A  V  D  Q  T  *  A  V  M  V  T  H  Y  K  L  R  Y  E  L  C  R  N  I  K  I  *  S  Y  N  K  T  K  K  K  R  V  W  K  *  C  I  F  V  E  R  *  V  S  L  K  G  F  N  I  *  G  E  E  T  A  D  D  I  G  I  C  C  F  Q  S  T  *  C  I  S  K  R  K  K  N   </first_frame>
            <second_frame>  R  W  L  N  Y  *  K  L  C  N  K  N  L  L  S  L  *  F  L  D  V  F  F  Q  I  K  E  Q  K  T  R  I  G  V  M  S  S  *  C  K  L  W  D  L  H  N  F  W  F  Y  F  *  V  S  K  :  E  Q  I  T  H  L  V  F  H  *  G  S  R  I  L  I  H  S  S  D  S  V  S  G  A  V  L  D  K  F  L  D  I  G  R  N  G  H  D  I  Y  P  L  V  M  V  A  L  E  W  K  A  S  R  T  Q  N  F  Q  W  F  F  K  F  I  T  *  I  V  I  V  G  I  G  Y  F  E  V  S  S  *  S  Q  E  G  H  D  F  L  I  K  K  G  *  A  E  M  A  E  S  *  G  T  K  D  *  Q  G  I  *  Y  C  Y  C  A  I  R  W  W  M  C  F  R  V  *  V  R  G  F  R  L  V  S  W  M  V  G  A  S  W  T  W  I  Q  *  *  *  *  F  R  *  *  L  C  C  A  C  S  L  L  W  L  R  L  C  K  C  G  R  K  C  P  R  *  V  S  A  S  H  W  K  L  E  G  F  I  *  Y  * :   E  *  E  V  Y  G  A  L  G  L  I  S  E  R  S  L  K  S  S  S  A  Y  G  A  D  Q  N  L  F  S  A  A  Y  P  D  S  I  L  Q  W  I  K  L  E  L  L  W  L  L  I  T  S  L  D  M  N  S  V  E  I  *  R  Y  N  P  T  T  K  R  K  K  K  E  C  G  N  N  V  Y  S  *  K  D  E  *  A  *  R  A  L  I  F  E  E  K  K  Q  Q  T  I  *  V  S  A  A  S  N  P  P  D  A  S  R  K  G  K  K  M  </second_frame>
            <third_frame>   G  G  *  I  I  E  N  Y  V  T  K  I  S  Y  P  S  N  F  *  M  F  F  F  R  L  K  S  K  K  Q  E  L  G  L  *  V  L  D  V  N  C  G  I  C  T  I  F  G  F  I  F  E  F  P  R :   N  K  S  L  I  *  C  F  I  E  V  P  E  S  *  Y  I  R  L  T  L  C  P  V  L  Y  W  I  S  F  W  I  *  E  E  M  A  M  T  F  T  P  L  S  W  L  L  W  S  G  K  H  Q  E  P  K  I  S  N  G  S  L  N  S  S  P  E  S  L  L  W  E  S  D  T  L  K  F  P  L  D  R  R  R  D  M  T  S  S  S  R  R  V  K  R  K  W  Q  S  R  E  E  R  K  I  D  R  E  Y  D  I  V  I  V  P  S  D  G  G  C  V  S  G  S  E  S  E  D  S  D  W  S  V  G  W  L  E  P  H  G  P  G  F  N  S  D  D  D  L  D  D  S  F  A  V  L  V  P  C  Y  G  Y  G  C  A  N  V  E  E  N  A  Q  D  K  F  L  Q  A  I  G  N  L  K  D  L  Y  D  T   : E  N  K  K  Y  M  E  H  W  V  S  S  L  R  D  H  *  N  P  A  A  P  M  V  L  I  R  T  C  F  L  L  P  I  L  I  L  F  C  S  G  S  N  L  S  C  Y  G  Y  S  L  Q  A  *  I  *  T  L  *  K  Y  K  D  I  I  L  Q  Q  N  E  K  K  K  S  V  E  I  M  Y  I  R  R  K  M  S  E  L  E  G  L  *  Y  L  R  R  R  N  S  R  R  Y  R  Y  L  L  L  P  I  H  L  M  H  L  E  K  E  K  K  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127755" stop="128220"/>
                    <exon start="129412" stop="129461"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EEMAMTFTPLSWLLWSGKHQEPKISNGSLNSSPESLLWESDTLKFPLDRRRDMTSSSRRVKRKWQSREERKIDREYDIVIVPSDGGCVSGSESEDSDWSVGWLEPHGPGFNSDDDLDDSFAVLVPCYGYGCANVEENAQDKFLQAIGNLKDLYDTENKKYMEHWVSSLRDH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="129796" PGL_stop="130135"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="129796" e_stop="130135"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="129796" e_stop="130135" e_length="340"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129796" stop="130135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTAGTATTTCATGGTATTTGATCTCCAGAATTGTCTCCGAAGATGTGACCTCTACTTGCAATGCTTCTTCATGAACATTGGTGTAAATTTTCGATGTAAAGTGACTGGAAGGAGACAGAAAGAAATGGATGATGGAGGACACAATATTCTTAAAAAGAGGGTAAGGCACAGCTGTGTGTTCTGCTTTATATCATTCTTTGATGTAAATATATCTGTGAATATGTAAATATGTTCATCTAGTTTGTAAATACGTCGCGTGAAGTTTGATAACCTTCATAAGTATTGTAAATAATTGTAAACCTCAGACAGCATTTGTTTGCAATAATATGCCTCTTGCT</gDNA_template>
            <first_frame> L  *  Y  F  M  V  F  D  L  Q  N  C  L  R  R  C  D  L  Y  L  Q  C  F  F  M  N  I  G  V  N  F  R  C  K  V  T  G  R  R  Q  K  E  M  D  D  G  G  H  N  I  L  K  K  R  V  R  H  S  C  V  F  C  F  I  S  F  F  D  V  N  I  S  V  N  M  *  I  C  S  S  S  L  *  I  R  R  V  K  F  D  N  L  H  K  Y  C  K  *  L  *  T  S  D  S  I  C  L  Q  *  Y  A  S  C  </first_frame>
            <second_frame>  F  S  I  S  W  Y  L  I  S  R  I  V  S  E  D  V  T  S  T  C  N  A  S  S  *  T  L  V  *  I  F  D  V  K  *  L  E  G  D  R  K  K  W  M  M  E  D  T  I  F  L  K  R  G  *  G  T  A  V  C  S  A  L  Y  H  S  L  M  *  I  Y  L  *  I  C  K  Y  V  H  L  V  C  K  Y  V  A  *  S  L  I  T  F  I  S  I  V  N  N  C  K  P  Q  T  A  F  V  C  N  N  M  P  L  A </second_frame>
            <third_frame>   L  V  F  H  G  I  *  S  P  E  L  S  P  K  M  *  P  L  L  A  M  L  L  H  E  H  W  C  K  F  S  M  *  S  D  W  K  E  T  E  R  N  G  *  W  R  T  Q  Y  S  *  K  E  G  K  A  Q  L  C  V  L  L  Y  I  I  L  *  C  K  Y  I  C  E  Y  V  N  M  F  I  *  F  V  N  T  S  R  E  V  *  *  P  S  *  V  L  *  I  I  V  N  L  R  Q  H  L  F  A  I  I  C  L  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0272I08.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129802" stop="130023"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YFMVFDLQNCLRRCDLYLQCFFMNIGVNFRCKVTGRRQKEMDDGGHNILKKRVRHSCVFCFISFFDVNISVNM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 29 chains have been computed
$ 
$ memory statistics:
$ 160424 bytes spliced alignments in total
$ 23 spliced alignments have been stored
$ 6974 bytes was the average size of a spliced alignment
$ 23296 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1664 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 35 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:51:10
-->
