<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:36:28"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M447-F" ref_strand="+" ref_description="SGN-M447-F TG587-F [rflp_markers_forward]">
      <seq>agaagctgatagtgaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagtgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggatcaattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtaggtgtagaattctaggttcttgccgaatctctttggttgacaatcaaatgagtgctgtagacaactgttttttcatatatattgagttgttaagtttatggttttctaacgtaattgagctcatagattatcaaattccgacttgatattgcaagtgagtgcaataccttatcaatgatcatgatgtcagcatacgcattatattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="71936" stop="73028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72236" g_stop="72728" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-M447-F" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M447-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72236" e_stop="72728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAACGTAATTGAGCTCAAAGATTATCAAATTCCGACTTGATATTGCAAGTGAGTGCAATACCTTATCAATTATCATGATGTCAGTATACGCATTATATTAT</genome_strand>
        <mrna_strand>AGAAGCTGATAGTG-AACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGGTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAACGTAATTGAGCTCATAGATTATCAAATTCCGACTTGATATTGCAAGTGAGTGCAATACCTTATCAATGATCATGATGTCAGCATACGCATTATATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M149-F" ref_strand="+" ref_description="SGN-M149-F TG464-F [rflp_markers_forward]">
      <seq>agaagctgatagtgaaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagtgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggatcaattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtagttgtagaattctaggttcttgccgaatctctttggttgacaatcaaatgagtgctgtagacaactgttttttcatatatattgagttgttaagtttatggttttctaacgtaattgagctcaaagattatcaaattccgacttgatattgcaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="71936" stop="72979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72236" g_stop="72679" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-M149-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M149-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="72236" e_stop="72679"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAACGTAATTGAGCTCAAAGATTATCAAATTCCGACTTGATATTGCAAGTGA</genome_strand>
        <mrna_strand>AGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAACGTAATTGAGCTCAAAGATTATCAAATTCCGACTTGATATTGCAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M447-R" ref_strand="+" ref_description="SGN-M447-R TG587-R [rflp_markers_reverse]">
      <seq>gcttgcatgcctgcagaagaaacaagtctctatcgtgcaaaaacttcaagaagaataactcagtgatgctcaaatcactagtcttttaacatgagtaaacagttaaactaaatcatctagacatcatgaaccagcagaaaacatacccaaaaaccccacatgacatttacaaaagaagtttcagggtgaggggtaataattgaggttgtggagaggaaacaagagtatatcaagcaaaaaattcaagaagaacaacgaatgctgaaaaccgagtctcttggcatggataaatgcataaagctcaagtcttgtcacaaaatttcaaggaaagggcaacttattaatgctcaaaactgaatcttttgacatgggcaaattcttacagctcaagtcttgtcacaaaatttcatggaaagagcaacttattaatgctcaaaactgaatattttgacatgggaaatgcttaaaactcaagtctcctcgcaaaatttacagaaaagtgtaacttaataatgctcaaaattcagtcttttgacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="74509" stop="73373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74211" g_stop="73673" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-M447-R" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M447-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74211" e_stop="73673"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGGATTTCTGCAGAAGAAACAAGTCTCTATCGTGCAAAAACTTCAAGAAGAATAACTCAGTGATGCTCAAATCACTAGTCTTTTAACATGAGTAAACAGTTAAACTAAATCATCTAGACATCATGAACCAGCAGAAAACATACCCAAAAACCCCACATGACATTTACAAAAGAAGTTTCAGGGTGAGGGGTAATAATTGAGGTTGTGGAGAGGAAACAAGAGTATATCAAGCAAAAAATTCAAGAAGAACAACGAATGCTGAAAACCGAGTCTCTTGGCATGGATAAATGCATAAAGCTCAAGTCTTGTCACAAAATTTCAAGGAAAGGGCAACTTATTAATGCTCAAAACTGAATCTTTTGACATGGGCAAATTCTTACAGCTCAAGTCTTGTCACAAAATTTCATGGAAAGAGCAACTTATTAATGCTCAAAACTGAATATTTTGACATGGGAAATGCTTAAAACTCAAGTCTCCTCGCAAAATTTACAGAAAAGTGTAACTTAATAATGCTCAAAATTCAGTCTTTTGACATG</genome_strand>
        <mrna_strand>GCTTGCATGCCTGCAGAAGAAACAAGTCTCTATCGTGCAAAAACTTCAAGAAGAATAACTCAGTGATGCTCAAATCACTAGTCTTTTAACATGAGTAAACAGTTAAACTAAATCATCTAGACATCATGAACCAGCAGAAAACATACCCAAAAACCCCACATGACATTTACAAAAGAAGTTTCAGGGTGAGGGGTAATAATTGAGGTTGTGGAGAGGAAACAAGAGTATATCAAGCAAAAAATTCAAGAAGAACAACGAATGCTGAAAACCGAGTCTCTTGGCATGGATAAATGCATAAAGCTCAAGTCTTGTCACAAAATTTCAAGGAAAGGGCAACTTATTAATGCTCAAAACTGAATCTTTTGACATGGGCAAATTCTTACAGCTCAAGTCTTGTCACAAAATTTCATGGAAAGAGCAACTTATTAATGCTCAAAACTGAATATTTTGACATGGGAAATGCTTAAAACTCAAGTCTCCTCGCAAAATTTACAGAAAAGTGTAACTTAATAATGCTCAAAATTCAGTCTTTTGACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M149-R" ref_strand="+" ref_description="SGN-M149-R TG464-R [rflp_markers_reverse]">
      <seq>aagaacaagtctctatcgtgcaaaaacttcaagaagaataactcagtgatgctcaaatcactagtcttttaacatgagtaaacagttaaactaaatcatctagacatcatgaaccagcagaaaacatacccaaaaaccccacatgacatttacaaaagaagtttcagggtgaggggtaataattgaggttgtggagaggaaacaagagtatatcaagcaaaaaattcaagaagaacaacgaatgctgaaaaccgagtctcttggcatggataaatgcataaagctcaagtcttgtcacaaaatttcaaggaaagggcaacttattaatgctcaaaactgaatcttttgacatgggcaaattcttacagctcaagtcttgtcacaaaatttcatggaaagagcaacttattaatgctcaaaactgaatattttgacatgggaaatgcttaaaactcaagtctcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="74495" stop="73430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74195" g_stop="73730" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-M149-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M149-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74195" e_stop="73730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAACAAGTCTCTATCGTGCAAAAACTTCAAGAAGAATAACTCAGTGATGCTCAAATCACTAGTCTTTTAACATGAGTAAACAGTTAAACTAAATCATCTAGACATCATGAACCAGCAGAAAACATACCCAAAAACCCCACATGACATTTACAAAAGAAGTTTCAGGGTGAGGGGTAATAATTGAGGTTGTGGAGAGGAAACAAGAGTATATCAAGCAAAAAATTCAAGAAGAACAACGAATGCTGAAAACCGAGTCTCTTGGCATGGATAAATGCATAAAGCTCAAGTCTTGTCACAAAATTTCAAGGAAAGGGCAACTTATTAATGCTCAAAACTGAATCTTTTGACATGGGCAAATTCTTACAGCTCAAGTCTTGTCACAAAATTTCATGGAAAGAGCAACTTATTAATGCTCAAAACTGAATATTTTGACATGGGAAATGCTTAAAACTCAAGTCTCCTC</genome_strand>
        <mrna_strand>AAGAA-CAAGTCTCTATCGTGCAAAAACTTCAAGAAGAATAACTCAGTGATGCTCAAATCACTAGTCTTTTAACATGAGTAAACAGTTAAACTAAATCATCTAGACATCATGAACCAGCAGAAAACATACCCAAAAACCCCACATGACATTTACAAAAGAAGTTTCAGGGTGAGGGGTAATAATTGAGGTTGTGGAGAGGAAACAAGAGTATATCAAGCAAAAAATTCAAGAAGAACAACGAATGCTGAAAACCGAGTCTCTTGGCATGGATAAATGCATAAAGCTCAAGTCTTGTCACAAAATTTCAAGGAAAGGGCAACTTATTAATGCTCAAAACTGAATCTTTTGACATGGGCAAATTCTTACAGCTCAAGTCTTGTCACAAAATTTCATGGAAAGAGCAACTTATTAATGCTCAAAACTGAATATTTTGACATGGGAAATGCTTAAAACTCAAGTCTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2311" ref_strand="+" ref_description="SGN-M2311 T1841 [cos_markers]">
      <seq>aaaaacgaacgaacatggctcttttctcttttacaaaattttcactacttgttttattttcaatttctctcctggcctgcacctcattggctcgcgatcattccatcgttggatactcctctgatgacttgacttgcatcgataagctcataaatctctttgataaatggatggataaacatggaaagatttataagagcattgaagagaaattacataggtttgagattttcaaggaaaatttgaagcatattgatgaaaggaataaaatggttaccaactattggcttggtctaaatgagttctctgatttgagccatgatgagtttaaggaaatgtatttaggactgaaagttgatcaagagttgcttaataaaagagagaaattatctcaagaagaatttgcgtatagagattttgttgatttgcctaagtctgtggattggaggaaaaaaggtgctgttacccctgtgaagaaccagggtcaatgtgggagttgttgggcattttcaacggtggctgcagtagagggaattaaccaaataaaaacagggaatttgacatccttgtctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="93576" stop="94816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93876" g_stop="94367" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94368" i_stop="94433" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94434" g_stop="94516" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="575" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-M2311" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M2311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93876" e_stop="94367"/>
          <exon e_start="94434" e_stop="94516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTGGTAAGTTGCGTCTTTTGGTTTCACAATAATTATGTTCAGATAATTAGTGTGACTGTATGTATGTAGGGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</genome_strand>
        <mrna_strand>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTG..................................................................GGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7070" ref_strand="+" ref_description="SGN-M7070 C2_At1g76440 [cosii_markers]">
      <seq>gaagtagagcggcgttcaattttggctacgaatctcttcaaaggagagggcttcagtgagggagcttacttgcttggtacagctgtaaaacatgaatccaaatgaatctgcaaagtctcatgccaaacccgatatcattctgactgggactgcaaaaacatgtccaattggaccgccacttggtttggttgacataggcagtagtgataatgcatatatttttcgtgttgcgcttcctggtgtaaggcataaatgtaatatccaatttgacatacagagagaagggagagtccggatagaaggtgtgattacagagagtgaggctttgaaaaactcactcaagggttatgagatgaaagttcagcagcttccttcccctgggccttttaccatatcgttcaatttgccaggacctgttgatcccagattatgttccccgcagtttagaaccgatggcattttggaagtcattgtgatgaaatatcagatacctttggtttcagcagaaggtttgcctgagaattggtacaatggctctttcccagctccttgaattctatttggtccacaatccctatgacacatgagaatcctacttactctacaactcttgtattgaatataacatggcatcagcaacgacttctcaacttctaggtagccatacctgtacaccaagggattttgcattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="99150" stop="95761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98850" g_stop="98791" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97304" g_stop="97111" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="254" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96499" g_stop="96061" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="693" r_length="439" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-M7070" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98850" e_stop="98791"/>
          <exon e_start="97304" e_stop="97111"/>
          <exon e_start="96499" e_stop="96061"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAGGCAAGTTTATCTCTTTCAATTTTTGTTTGCTAGTTATTTTTTTTAATTAGGGTTTTTTCTGGGATTTTACATTAGTGGATTTGTTGTTTTGTGTGATGTTTTTGGTTCTCCTACTTTGGTGCTACTGATTAGGCAAATGCTGGAGGTTTTTTCAGGAAAGGGCCATACTTTATGTGATGCTTCCCTTTTCATGTTAAAGACTGATATAAGAGTGTTAAAAATCCTATCTTTCATGATTGTTTTCTCATCTTTGGCTTAGGCTGTCCTAATGAGTGAAATGGGGGAGTAACCTTATGATTTAATTGTTTGCTCGGGTGCAGTGTGTTTCATCAACGCTAAAATGGTCACCACAGTAAATTTCCTGTCTCTTTGTGGCTTGTTTGTATTTACAAGACTTTGCAGAAAAAATCTGTTGTCTTTAAACTAACATAAATTTGAAATGTCCAGTTCCTACCTGCTACGGCTAAACACTTCGTCATTATGATGGTCAGCTGTAGATGGTGTCTCTTTTGTTTGAAGAATGTAATCGAGTCTTTAGGTTAAGTCAGTGGAGATTCCCTCAAATAAGGATAGGAACTTTTTCTGGAGTAAATAAATCAACTTATATATTAGATCTGTAGCATCTTTTAGCCTCTATATATATGTAAACATGGACTTGCAGATTGATGTTATAAATTAAGGACCCTGCAGCTTGTTCCACTGCTGATTTCTCTTCAGGAGTTGATGCATGTAAAACTGTTGTAGTTTGTGGAGGTGTTGAGGAGGATCGAGCGCTGCAATTATTTTGTAGCAGACTTCATTAAGTTTCATGCAATGTCTGTCAGGAGGCTTAATTTGTTAGAAATTTGTTTGTAAGGGTAATGGACAAAATCTATGGAACTTAAATCTTATTAGTACTCCCTCTGTCCCAAAGTAGATGAGCACTTTTTATTTTACATGGTGATTAAGAAGTCATTAGTAGATTGATCTACTTTACTATTACCCTTTGTTCATATTAATTAGCCTCTTGAAAAAAGAAATTCTTGGATCTTTAAAATATGGGACAAATACTTTGAGTAAGCTGCCCTACTAATATGGGACGGTGGAAGTACTGATTTTCCATATAGGCAAAATATTTTAGGAGTGGAATGAAAACACAGTTGAATAGGATAGAATAAATACATATGATTCAAACAACTAGGACCAACTAATATCGGATTTGAAGCATATTTGAATGATTGGGGCTATTTCTTTTTTCTTGTCAAAATCACACTCATCCTCAGATCTTTTTTTTTATTCAATCCTACAAAGTGAATGTGAACTTTAATACATATGCAAATGCATCAGTAGTCAAATTCTCTATGCTCTAATCCCTGAGGCTAATTCTCTGTCTTATAGCCTGCAGGAAGATCTTGCTTGACACATGTTTAAGCAAGAATTTAGAAATCTGCAGAGCCACCTCACACTTTTTCCCCTGAAGCTAAAGTCGTTATCTTATAAACTGCAGGGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAATGTAAGTACTTTTAAATTCCTCTGTAGGTTAATTGTTACTATTGTCTATTTTTTAGAGTGGGTATAGTTAATGGGTGCAACTAGGGATGGCAATGGTGGTGGTGCGGGTCGGGTTGAGCTTGCCCCACATCTGCTCTGCCCCATTTCCATCTCTAGGTGCAACACTGATTATTTGATGCATACACATACTTAAATCTCTTTGATCATAATATGATGATTCTGAAATGAGTCATTCCTAGAAATTGGAATATAAGAATGTATTACAAACACTTGCTATCAATCAATCAAAATTCAGCTACACGGCTACATTAAGTAATTGGGGTTGGTTGGGTAAGTCCCCTGAATTATAAGCACTTGCTATGCAGTGGTAAAATGATTGTAACATTAGGTTTTCGTAAAGTAGCATTTGCAAATTTCGTGCAGGAGTATCATCTATATTTTATATTAAAAGCAAGAGTCCTCAAATTATTAAAGTTGTAGATTCTAAAATCGATCACAGTTTTATCAACTTATAGCAATGCCGTACACTTGACTAGTATACTTAATGTGAAGGTAAGCAAAAAATTTATTTTCTGGAATTTAACAATCAATTGATGTGTATATACTGTACAGGTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTAT</genome_strand>
        <mrna_strand>GAAGTAGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7390" ref_strand="+" ref_description="SGN-M7390 C2_At2g33610 [cosii_markers]">
      <seq>tcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcggtgagcagtttatgggccctcctgaatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaagagaaggcgcctcacaccctttgctgatacaagcaacccaattatagcacaggctgctttcctctctgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="117492" stop="115031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="117326" g_stop="116939" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="116938" i_stop="116609" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="116608" g_stop="116237" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="760" r_length="372" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="116236" i_stop="115353" i_length="884">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="115352" g_stop="115331" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="761" r_stop="782" r_length="22" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-M7390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="117326" e_stop="116939"/>
          <exon e_start="116608" e_stop="116237"/>
          <exon e_start="115352" e_stop="115331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAGGTACTAAGTCACATTTCTTATTACATGGATGTTTTAGGATGTTAGATCAGTGTTTGGGAAGCAAGAAGCAAAAAACAGCGACAAGGGTTCGCTTTACAGAAGCGAGAAGCGTGAAGTTTGCGCACACTTTTTTCAGATAAAGCGGTATTTAGTATAAAAATAATAAAAAATATTAAATAACTGAATAGAAGTAACATATTCCTAGATTAAAAAGTAAATAGATTGTCAATAATCCTCGTGAGTCATAACATATAAAACAAATACATAACCAAATCACAAAGGATCAAACTCTTATTCTTCATTGTGACATTGAATAAGAAAATACAACTTACTACAAGCAAAGATAAAAGAGTAACTCAGTAATAGAACAACAAAAATACTGTAGAAAAAAATATAGAGACAGAACAGATCAGCAGCCAGCAAAAAAGAAAAAAAAAAGAAAAAAACAGAGCAGCAGTAAGTCAGTTAGATATACATGTTCTATTTAGTATTGTGGACCTTGAATATTAAAAAGAAACTGGACATCTGTTAAGTGCTTGTGCATACAATATTCCCTTGGATACTTTGCAAGTTCAATGTAGTTGCTGAAGCAATTCCAATTTCTACGCGATCAAGGGAACTTCGCTTCCCATCTGACTTTGAATTATTTACGTAGATCTTAAGACGTTCTGCTGAAGCAATTTCAATTTCTACACAATCAAGGAAACTTTGCTTCTCATCTTACTTTGATATGTTATATAGATCTAGGGTCATTCTTCTTCCTCATTGACTAAGAGTCTTTTGGGCTGCTGATTTCTTGAAGTAGACAAGTTGATTAATTAGGTCTTTAATAATAGTCAAGTTAGACTTCAACTGATTCCTCTTGTTTTTGAATCTTGCTGCAGGCTGCTTTCCTCTCTGCTCTTG</genome_strand>
        <mrna_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTTTCCTCTCTGCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>7</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="72236" PGL_stop="72728"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72236" e_stop="72728"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="72236" e_stop="72728" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72236" stop="72728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M447-F" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72236" stop="72679"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M149-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAACGTAATTGAGCTCAAAGATTATCAAATTCCGACTTGATATTGCAAGTGAGTGCAATACCTTATCAATTATCATGATGTCAGTATACGCATTATATTAT</gDNA_template>
            <first_frame> R  S  *  *  *  N  T  P  Q  L  Q  I  V  M  K  R  S  L  V  V  E  I  L  R  T  V  L  H  Q  S  S  K  E  L  E  L  *  D  R  K  L  M  I  F  W  K  *  L  M  R  Y  N  F  S  A  D  N  I  D  P  I  *  M  A  K  I  L  L  *  G  E  Q  Q  N  *  D  Q  F  E  I  L  V  D  A  A  V  C  C  *  E  P  E  *  L  C  S  C  R  I  L  G  S  C  R  I  S  L  V  D  N  Q  M  S  A  V  D  N  C  F  F  I  Y  I  E  L  L  S  L  W  F  S  N  V  I  E  L  K  D  Y  Q  I  P  T  *  Y  C  K  *  V  Q  Y  L  I  N  Y  H  D  V  S  I  R  I  I  L  </first_frame>
            <second_frame>  E  A  D  S  E  T  H  H  S  Y  R  *  L  *  K  E  V  W  W  S  R  Y  *  E  P  Y  C  T  N  P  A  K  N  *  S  F  E  T  G  N  *  *  S  S  G  N  N  *  *  D  I  I  S  V  Q  T  T  L  I  Q  Y  K  W  L  K  Y  C  C  E  V  N  N  R  I  R  I  N  S  R  Y  *  L  M  Q  L  Y  V  V  E  N  L  N  N  F  V  V  V  E  F  *  V  L  A  E  S  L  W  L  T  I  K  *  V  L  *  T  T  V  F  S  Y  I  L  S  C  *  V  Y  G  F  L  T  *  L  S  S  K  I  I  K  F  R  L  D  I  A  S  E  C  N  T  L  S  I  I  M  M  S  V  Y  A  L  Y  Y </second_frame>
            <third_frame>   K  L  I  V  K  H  T  T  V  T  D  S  Y  E  K  K  S  G  G  R  D  I  E  N  R  I  A  P  I  Q  Q  R  I  R  A  L  R  Q  E  I  D  D  L  L  E  I  I  D  E  I  *  F  Q  C  R  Q  H  *  S  N  I  N  G  *  N  I  V  V  R  *  T  T  E  L  G  S  I  R  D  I  S  *  C  S  C  M  L  L  R  T  *  I  T  L  *  L  *  N  S  R  F  L  P  N  L  F  G  *  Q  S  N  E  C  C  R  Q  L  F  F  H  I  Y  *  V  V  K  F  M  V  F  *  R  N  *  A  Q  R  L  S  N  S  D  L  I  L  Q  V  S  A  I  P  Y  Q  L  S  *  C  Q  Y  T  H  Y  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="74211" PGL_stop="73673"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74211" e_stop="73673"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="74211" e_stop="73673" e_length="539"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74211" stop="73673"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M447-R" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74195" stop="73730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M149-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTGGATTTCTGCAGAAGAAACAAGTCTCTATCGTGCAAAAACTTCAAGAAGAATAACTCAGTGATGCTCAAATCACTAGTCTTTTAACATGAGTAAACAGTTAAACTAAATCATCTAGACATCATGAACCAGCAGAAAACATACCCAAAAACCCCACATGACATTTACAAAAGAAGTTTCAGGGTGAGGGGTAATAATTGAGGTTGTGGAGAGGAAACAAGAGTATATCAAGCAAAAAATTCAAGAAGAACAACGAATGCTGAAAACCGAGTCTCTTGGCATGGATAAATGCATAAAGCTCAAGTCTTGTCACAAAATTTCAAGGAAAGGGCAACTTATTAATGCTCAAAACTGAATCTTTTGACATGGGCAAATTCTTACAGCTCAAGTCTTGTCACAAAATTTCATGGAAAGAGCAACTTATTAATGCTCAAAACTGAATATTTTGACATGGGAAATGCTTAAAACTCAAGTCTCCTCGCAAAATTTACAGAAAAGTGTAACTTAATAATGCTCAAAATTCAGTCTTTTGACATG</gDNA_template>
            <first_frame> N  W  I  S  A  E  E  T  S  L  Y  R  A  K  T  S  R  R  I  T  Q  *  C  S  N  H  *  S  F  N  M  S  K  Q  L  N  *  I  I  *  T  S  *  T  S  R  K  H  T  Q  K  P  H  M  T  F  T  K  E  V  S  G  *  G  V  I  I  E  V  V  E  R  K  Q  E  Y  I  K  Q  K  I  Q  E  E  Q  R  M  L  K  T  E  S  L  G  M  D  K  C  I  K  L  K  S  C  H  K  I  S  R  K  G  Q  L  I  N  A  Q  N  *  I  F  *  H  G  Q  I  L  T  A  Q  V  L  S  Q  N  F  M  E  R  A  T  Y  *  C  S  K  L  N  I  L  T  W  E  M  L  K  T  Q  V  S  S  Q  N  L  Q  K  S  V  T  *  *  C  S  K  F  S  L  L  T   </first_frame>
            <second_frame>  I  G  F  L  Q  K  K  Q  V  S  I  V  Q  K  L  Q  E  E  *  L  S  D  A  Q  I  T  S  L  L  T  *  V  N  S  *  T  K  S  S  R  H  H  E  P  A  E  N  I  P  K  N  P  T  *  H  L  Q  K  K  F  Q  G  E  G  *  *  L  R  L  W  R  G  N  K  S  I  S  S  K  K  F  K  K  N  N  E  C  *  K  P  S  L  L  A  W  I  N  A  *  S  S  S  L  V  T  K  F  Q  G  K  G  N  L  L  M  L  K  T  E  S  F  D  M  G  K  F  L  Q  L  K  S  C  H  K  I  S  W  K  E  Q  L  I  N  A  Q  N  *  I  F  *  H  G  K  C  L  K  L  K  S  P  R  K  I  Y  R  K  V  *  L  N  N  A  Q  N  S  V  F  *  H  </second_frame>
            <third_frame>   L  D  F  C  R  R  N  K  S  L  S  C  K  N  F  K  K  N  N  S  V  M  L  K  S  L  V  F  *  H  E  *  T  V  K  L  N  H  L  D  I  M  N  Q  Q  K  T  Y  P  K  T  P  H  D  I  Y  K  R  S  F  R  V  R  G  N  N  *  G  C  G  E  E  T  R  V  Y  Q  A  K  N  S  R  R  T  T  N  A  E  N  R  V  S  W  H  G  *  M  H  K  A  Q  V  L  S  Q  N  F  K  E  R  A  T  Y  *  C  S  K  L  N  L  L  T  W  A  N  S  Y  S  S  S  L  V  T  K  F  H  G  K  S  N  L  L  M  L  K  T  E  Y  F  D  M  G  N  A  *  N  S  S  L  L  A  K  F  T  E  K  C  N  L  I  M  L  K  I  Q  S  F  D  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="93876" PGL_stop="94516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93876" e_stop="94367"/>
            <exon e_start="94434" e_stop="94516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93876" e_stop="94367" e_length="492"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94368" i_stop="94433" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94434" e_stop="94516" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93876" stop="94367"/>
              <exon start="94434" stop="94516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2311" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTG : GGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</gDNA_template>
            <first_frame> K  N  E  R  T  W  L  F  S  L  L  Q  N  F  H  Y  L  F  Y  F  Q  F  L  S  W  P  A  P  H  W  L  A  I  I  P  S  L  D  T  P  L  M  T  *  L  A  S  I  S  S  *  I  S  L  I  N  G  W  I  N  M  E  R  F  I  R  A  L  K  R  N  Y  I  G  L  R  F  S  R  K  I  *  S  I  L  M  K  G  I  K  W  L  P  T  I  G  L  V  *  M  S  S  L  I  *  A  M  M  S  L  R  K  C  I  *  D  *  K  L  I  K  S  C  L  I  K  E  R  N  Y  L  K  K  N  L  R  I  E  I  L  L  I  C  L  S  L  W  I  G  G  K  K  V  L  L  P  L  *  R  T  R  V  N  V  :  G  V  V  G  H  F  Q  R  W  L  Q  *  R  E  L  T  K  *  K  Q  G  I  *  H  P  C  L   </first_frame>
            <second_frame>  K  T  N  E  H  G  S  F  L  F  Y  K  I  F  T  T  C  F  I  F  N  F  S  P  G  L  H  L  I  G  S  R  S  F  H  R  W  I  L  L  *  *  L  D  L  H  R  *  A  H  K  S  L  *  *  M  D  G  *  T  W  K  D  L  *  E  H  *  R  E  I  T  *  V  *  D  F  Q  G  K  F  E  A  Y  *  *  K  E  *  N  G  Y  Q  L  L  A  W  S  K  *  V  L  *  F  E  P  *  *  V  *  G  N  V  F  R  T  E  S  *  S  R  V  A  *  *  K  R  E  I  I  S  R  R  I  C  V  *  R  F  C  *  F  A  *  V  C  G  L  E  E  K  R  C  C  Y  P  C  E  E  P  G  S  M  W :   E  L  L  G  I  F  N  G  G  C  S  R  G  N  *  P  N  K  N  R  E  F  D  I  L  V  *  </second_frame>
            <third_frame>   K  R  T  N  M  A  L  F  S  F  T  K  F  S  L  L  V  L  F  S  I  S  L  L  A  C  T  S  L  A  R  D  H  S  I  V  G  Y  S  S  D  D  L  T  C  I  D  K  L  I  N  L  F  D  K  W  M  D  K  H  G  K  I  Y  K  S  I  E  E  K  L  H  R  F  E  I  F  K  E  N  L  K  H  I  D  E  R  N  K  M  V  T  N  Y  W  L  G  L  N  E  F  S  D  L  S  H  D  E  F  K  E  M  Y  L  G  L  K  V  D  Q  E  L  L  N  K  R  E  K  L  S  Q  E  E  F  A  Y  R  D  F  V  D  L  P  K  S  V  D  W  R  K  K  G  A  V  T  P  V  K  N  Q  G  Q  C   : G  S  C  W  A  F  S  T  V  A  A  V  E  G  I  N  Q  I  K  T  G  N  L  T  S  L  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93878" stop="94367"/>
                    <exon start="94434" stop="94516"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTNMALFSFTKFSLLVLFSISLLACTSLARDHSIVGYSSDDLTCIDKLINLFDKWMDKHGKIYKSIEEKLHRFEIFKENLKHIDERNKMVTNYWLGLNEFSDLSHDEFKEMYLGLKVDQELLNKREKLSQEEFAYRDFVDLPKSVDWRKKGAVTPVKNQGQCGSCWAFSTVAAVEGINQIKTGNLTSLSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="98850" PGL_stop="96061"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98850" e_stop="98791"/>
            <exon e_start="97304" e_stop="97111"/>
            <exon e_start="96499" e_stop="96061"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.827" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98850" e_stop="98791" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.827">
            <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97304" e_stop="97111" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="96499" e_stop="96061" e_length="439"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98850" stop="98791"/>
              <exon start="97304" stop="97111"/>
              <exon start="96499" stop="96061"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7070" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTAGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG : GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT : GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTAT</gDNA_template>
            <first_frame> E  V  E  R  R  S  I  L  A  T  N  L  F  K  G  E  G  F  S  E  :  G  A  Y  L  L  G  T  A  V  K  H  E  S  K  *  I  C  K  V  S  C  Q  T  R  Y  H  S  D  W  D  C  K  N  M  S  N  W  T  A  T  W  F  G  *  H  R  Q  *  *  *  C  I  Y  F  S  C  C  A  S  W  C  K  A  *  M :   *  Y  P  I  *  H  T  E  R  R  E  S  P  D  R  R  C  D  Y  R  E  *  G  F  E  K  L  T  Q  G  L  *  D  E  S  S  A  A  S  F  P  W  A  F  Y  H  I  V  Q  F  A  R  T  C  *  S  Q  I  M  F  P  A  V  *  N  R  W  H  F  G  S  H  C  D  E  I  S  D  T  F  G  F  S  R  R  F  A  *  E  L  V  Q  W  L  F  P  S  S  L  N  S  I  W  S  T  I  P  M  T  H  E  N  P  T  Y  S  T  T  L  V  L  N  I  T  W  H  Q  Q  R  L  L  N  F  *  V  A  I  P  V  H  Q  G  I  L  H  Y </first_frame>
            <second_frame>  K  *  S  G  V  Q  F  W  L  R  I  S  S  K  E  R  A  S  V  R :   E  L  T  C  L  V  Q  L  *  N  M  N  P  N  E  S  A  K  S  H  A  K  P  D  I  I  L  T  G  T  A  K  T  C  P  I  G  P  P  L  G  L  V  D  I  G  S  S  D  N  A  Y  I  F  R  V  A  L  P  G  V  R  H  K   : C  N  I  Q  F  D  I  Q  R  E  G  R  V  R  I  E  G  V  I  T  E  S  E  A  L  K  N  S  L  K  G  Y  E  M  K  V  Q  Q  L  P  S  P  G  P  F  T  I  S  F  N  L  P  G  P  V  D  P  R  L  C  S  P  Q  F  R  T  D  G  I  L  E  V  I  V  M  K  Y  Q  I  P  L  V  S  A  E  G  L  P  E  N  W  Y  N  G  S  F  P  A  P  *  I  L  F  G  P  Q  S  L  *  H  M  R  I  L  L  T  L  Q  L  L  Y  *  I  *  H  G  I  S  N  D  F  S  T  S  R  *  P  Y  L  Y  T  K  G  F  C  I   </second_frame>
            <third_frame>   S  R  A  A  F  N  F  G  Y  E  S  L  Q  R  R  G  L  Q  *   : G  S  L  L  A  W  Y  S  C  K  T  *  I  Q  M  N  L  Q  S  L  M  P  N  P  I  S  F  *  L  G  L  Q  K  H  V  Q  L  D  R  H  L  V  W  L  T  *  A  V  V  I  M  H  I  F  F  V  L  R  F  L  V  *  G  I  N  :  V  I  S  N  L  T  Y  R  E  K  G  E  S  G  *  K  V  *  L  Q  R  V  R  L  *  K  T  H  S  R  V  M  R  *  K  F  S  S  F  L  P  L  G  L  L  P  Y  R  S  I  C  Q  D  L  L  I  P  D  Y  V  P  R  S  L  E  P  M  A  F  W  K  S  L  *  *  N  I  R  Y  L  W  F  Q  Q  K  V  C  L  R  I  G  T  M  A  L  S  Q  L  L  E  F  Y  L  V  H  N  P  Y  D  T  *  E  S  Y  L  L  Y  N  S  C  I  E  Y  N  M  A  S  A  T  T  S  Q  L  L  G  S  H  T  C  T  P  R  D  F  A  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97276" stop="97111"/>
                    <exon start="96499" stop="96201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMNPNESAKSHAKPDIILTGTAKTCPIGPPLGLVDIGSSDNAYIFRVALPGVRHKCNIQFDIQREGRVRIEGVITESEALKNSLKGYEMKVQQLPSPGPFTISFNLPGPVDPRLCSPQFRTDGILEVIVMKYQIPLVSAEGLPENWYNGSFPAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="117326" PGL_stop="115331"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="117326" e_stop="116939"/>
            <exon e_start="116608" e_stop="116237"/>
            <exon e_start="115352" e_stop="115331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="117326" e_stop="116939" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="116938" i_stop="116609" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="116608" e_stop="116237" e_length="372"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="1.000">
            <gDNA_intron_boundary i_start="116236" i_stop="115353" i_length="884"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="115352" e_stop="115331" e_length="22"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="117326" stop="116939"/>
              <exon start="116608" stop="116237"/>
              <exon start="115352" stop="115331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG : TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG : GCTGCTTTCCTCTCTGCTCTTG</gDNA_template>
            <first_frame> S  L  S  S  *  I  L  *  W  K  V  A  F  Q  E  P  *  D  I  Q  I  L  *  E  Y  Y  Y  S  *  I  Q  R  *  P  H  *  K  D  N  L  Y  *  G  S  Q  D  H  C  W  R  R  R  L  N  S  *  G  F  R  F  L  R  D  M  G  F  D  Q  L  H  C  *  L  F  Q  V  S  D  Q  V  G  R  K  R  V  K  V  N  I  C  L  S  S  A  K  C  *  R  Q  W  N  V  H  *  F  Y  S  P  Q  E  K  N  L  Q  S  L  Q  N  S  L  Q  D  C  L  F  R  F  *  *   : V  *  F  D  S  L  C  K  M  L  C  *  *  *  *  *  S  W  R  E  *  F  R  A  S  T  G  *  D  *  *  G  S  *  D  R  L  D  *  Q  R  D  F  A  P  F  R  S  S  Y  A  L  W  R  *  L  E  E  G  C  *  A  C  W  W  Q  K  H  *  G  M  C  G  *  I  C  Q  A  S  F  R  *  A  V  Y  G  P  S  *  I  C  R  N  G  *  *  I  Q  V  *  N  Y  V  S  S  V  *  E  K  A  P  H  T  L  C  *  Y  K  Q  P  N  Y  S  T   : G  C  F  P  L  C  S   </first_frame>
            <second_frame>  R  F  L  P  E  F  F  D  G  R  S  P  S  K  N  P  K  T  Y  K  Y  Y  R  N  T  I  I  R  R  F  R  D  N  P  T  K  K  I  T  F  T  E  A  R  K  T  I  V  G  D  V  G  S  I  R  R  V  F  D  F  S  E  T  W  G  L  I  N  Y  T  A  N  S  S  K  S  L  I  K  W  E  E  K  E  S  K  S  T  S  A  S  A  P  Q  N  A  D  A  N  G  T  S  T  D  F  T  L  P  K  K  R  I  C  N  L  C  K  T  V  C  R  I  A  C  F  A  S  D  K  :  Y  D  L  T  L  C  A  R  C  Y  V  S  N  D  N  R  V  G  V  N  N  S  E  L  R  R  V  E  I  S  E  E  V  K  T  D  W  T  D  K  E  T  L  H  L  L  E  A  L  M  H  Y  G  D  D  W  K  K  V  A  E  H  V  G  G  R  S  T  K  E  C  V  A  R  F  V  K  L  P  F  G  E  Q  F  M  G  P  P  E  S  A  E  M  D  S  E  S  R  S  E  T  M  Y  L  Q  S  K  R  R  R  L  T  P  F  A  D  T  S  N  P  I  I  A  Q  :  A  A  F  L  S  A  L  </second_frame>
            <third_frame>   A  F  F  L  N  S  L  M  E  G  R  L  P  R  T  L  R  H  T  N  T  I  G  I  L  L  F  V  D  S  E  I  T  P  L  K  R  *  P  L  L  R  L  A  R  P  L  L  E  T  S  A  Q  F  V  G  F  S  I  S  Q  R  H  G  V  *  S  I  T  L  L  T  L  P  S  L  *  S  S  G  K  K  K  S  Q  S  Q  H  L  P  Q  L  R  K  M  L  T  P  M  E  R  P  L  I  L  L  S  P  R  K  E  S  A  I  S  A  K  Q  F  A  G  L  L  V  S  L  L  I  S :   M  I  *  L  F  V  Q  D  A  M  L  V  M  I  I  E  L  A  *  I  I  Q  S  F  D  G  L  R  L  V  R  K  L  R  Q  I  G  L  T  K  R  L  C  T  F  *  K  L  L  C  I  M  A  M  I  G  R  R  L  L  S  M  L  V  A  E  A  L  R  N  V  W  L  D  L  S  S  F  L  S  V  S  S  L  W  A  L  L  N  L  Q  K  W  I  V  N  P  G  L  K  L  C  I  F  S  L  R  E  G  A  S  H  P  L  L  I  Q  A  T  Q  L  *  H  R :   L  L  S  S  L  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="117325" stop="116939"/>
                    <exon start="116608" stop="116237"/>
                    <exon start="115352" stop="115332"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>780</number_coding_nucleotides>
                  <number_encoded_amino_acids>260</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLPEFFDGRSPSKNPKTYKYYRNTIIRRFRDNPTKKITFTEARKTIVGDVGSIRRVFDFSETWGLINYTANSSKSLIKWEEKESKSTSASAPQNADANGTSTDFTLPKKRICNLCKTVCRIACFASDKYDLTLCARCYVSNDNRVGVNNSELRRVEISEEVKTDWTDKETLHLLEALMHYGDDWKKVAEHVGGRSTKECVARFVKLPFGEQFMGPPESAEMDSESRSETMYLQSKRRRLTPFADTSNPIIAQAAFLSAL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 16 chains have been computed
$ 
$ memory statistics:
$ 14744 bytes spliced alignments in total
$ 7 spliced alignments have been stored
$ 2106 bytes was the average size of a spliced alignment
$ 10392 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2078 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:36:38
-->
