<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 02:35:08"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U340364" ref_strand="+" ref_description="SGN-U340364        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pentatricopeptide (PPR) repeat-containing protein, low similarity to fertility restorer (Petunia x hybrida) GI:22128587; contains Pfam profile PF01535: PPR repeat | chr5:17636175-17639095 FORWARD | Aliases: MQD19.18, MQD19_18(evalue: 2e-31, score=132) genbank/nr: gi|37536960|ref|NP_922782.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] gi|18855001|gb|AAL79693.1| hypothetical protein [Oryza sativa] gi|31433571|gb|AAP55069.1| hypothetical protein [Oryza sativa (japonica cultivar-group)](evalue: 2e-36, score=155)">
      <seq>aaggaagagatggagaagtggaatgagctacaatctcgattactatctcaattcaacaatgcttcttccatcattcagaggttacagattcttcaggattctaagaactatggtgctttgacatgtgttgaagccattcaggaagctgtcttgctgaaacagatgaattctctacaaaatatcttgctttcaatgaatgaaactatggaaaagtttcatgtggttgtgttgtcgcttgataagatggttcgtgatggtagacagctcataaaagggggatccgttcagaagaatgtgaaacagctacagcaacacgtcgggatgaagcctagcattgctgattgcttggatgggctacaacttctttatgagatgcaccaatcagagtaccgtctgaaattgtcggtcatatcagcaatttcagcatttgctttacagcctagtgcaactgatgatttagctgcacttcagcaactgttggatgatcagcctaacatccccaaagaggaagttcaagtcatttttgaaatcatatttgctgaagagatagcttgatgtctactaagcatggatccttggactgatgaagtgcttttggaacttgcaatgtgttttaagttaaggaagacttcagttctggctaaagagcangaaatatcttgcacttgggtgctacagtgctcgaactcttcaagtgtatgtgtcgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="2527" stop="6864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2827" g_stop="2913" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2914" i_stop="3044" i_length="131">
            <donor d_prob="0.980" d_score="1.00"/>
            <acceptor a_prob="0.742" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3045" g_stop="3163" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="206" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3164" i_stop="3935" i_length="772">
            <donor d_prob="0.035" d_score="1.00"/>
            <acceptor a_prob="0.932" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3936" g_stop="4115" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="386" r_length="180" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4116" i_stop="4683" i_length="568">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4684" g_stop="4740" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="387" r_stop="443" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4741" i_stop="5292" i_length="552">
            <donor d_prob="0.564" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="5293" g_stop="5360" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="511" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="5361" i_stop="6367" i_length="1007">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.771" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="6368" g_stop="6564" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="708" r_length="197" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U340364" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>708</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U340364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2827" e_stop="2913"/>
          <exon e_start="3045" e_stop="3163"/>
          <exon e_start="3936" e_stop="4115"/>
          <exon e_start="4684" e_stop="4740"/>
          <exon e_start="5293" e_stop="5360"/>
          <exon e_start="6368" e_stop="6564"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAAGAGATGGAGAAGTGGAATGAGCTACAATCTCGATTACTATCTCAATTCAACAATGCTTCTTCCATCATTCAGAGGTTACAGGTACTTTCCCCAGTTTTTTACCCATATTCCAATGGCTCAAAATCAGTGGCTGAGTCCGGATTTTTAAATTCAATATCTAGAAATATTGAGGGCTTTTGAAATAGCTCATAAAAGAATACATTTTTATGCAGATTCTTCAGGATTCTAAGAACTATGGTGCTTTGACATGTGTTGAAGCCATTCAGGAAGCTGTCTTGCTGAAACAGATGAATTCTCTACAAAATATCTTGCTTTCAATGAATGAAACTATGTAGGTCTTTCTAGTCCATGCTACTAAGTTCTGTCAATCCAAACTAATCCTTTTATCCATTTGGGAGCATTTTAATACCAAAAAATTGGAAAAGGTATGTTAAGTTAAGTAGTGCTTATCTTGAAATAGTGATTCTCAAGTCTCTAACTAGAATAAATTAACTACTGGAAAACACAATCTTTTGTCATTTTTATAACTCATAATATTGTTGTTTGACCTTTTTATATATGTTTCAGTATTGTTAAAAGCTAAAAGCGTAAAAAAGCTCTATGGTCATTTGGAGCTTTAAGCACAAAGAGAAAATAAAACGGGGGTTTAGTAAAAAGAAGGTGCAAATGGAGATAAAATACATGTATGATTAGTTCAAGTCTAATAATTATAAACATGAAAAACAAATATATGGATAGTGAAATTGAATATTTTGTAATGATGAAGTGATATACCACTTCTTAAGTGTCACCTCTTCAGGAAACACTCATTTGCTAGACAAATTTGTATTAGAGCCTTGATGGCAGGCACTGAAGTACACGGCACTCAACATTATTTGAGCCTCGCTTCAGGGTTTAAGCACGGCTTTGATAACACTGATTTGTTCTTTGTTCTTCTTTCTTGTATTTGATTATGCTAGTTAATGTTACTCCTTCGTAATGTTTTATAGCAGTAATTGAGTAGCTTCTGCAGTTGTATGTGCTTTAACTTCTTTGAGCTAGAAGTTGCTTTATCAACTAAGAAGGTTATTTTTTTGCCTCTTTATGTTTGGTTCAAAATCTAGGGAAAAGTTTCATGTGGTTGTGTTGTCGCTTGATAAGATGGTTCGTGATGGTAGACAGCTCATAAAAGGGGGATCCGTTCAGAAGAATGTGAAACAGCTACAGCAACACGTCGGGATGAAGCCTAGCATTGCTGATTGCTTGGATGGGCTACAACTTCTTTATGAGATGCACCAATCAGAGTATGCATAACGAAGAACATATATATTTTTCCTGTTTCTCTTTTCCTGCCTTGTTTGTCTTAAATGAGAAAATTTGTTGTCTTTTAGTACTAGCAAATTTCATCTTCGAGCCTTTATTAGGCATGAATATGTTGTTTTCCAAGTAAATTTTGTACTCTTTTTTTCCCCTTCTTTCTATCTTTGCCTTTTCTTTGTGATAGATGTACTTTGATCTTTCTTCCTAATAATTTGATAATCATATAATTATCCATAAAATAAAGCCAGATATCATGCAATCCGCCATCACCTTCTTAGTATTAGAAGATCACTTGCTCAATCAGGAGCTTTTTCTTGTTACTATGATAATGATTTGGTTGATCTATTTACTATGACAGGTAAGATGAAGAAACTTTCTGTTTGGAATCAAGTTTACCTCTTTCTTCTCTTTCTCCTCCAGGACCTCCTCACCTCCTCACCTCCAATGAATTTCATATAATCATTCTTCACTGTTGGAACTATTTCTAATCCTTGCATTATTTGTGATATTGCATCAAACTTATGTTACTGATTCCCCCAGTACTTTTTTCAGGTACCGTCTGAAATTGTCGGTCATATCAGCAATTTCAGCATTTGCTTTACAGCCTAGGTATGATGTGACAGTTTTTGCCATTTATTTCTTCTCTAGATCTCACTGGCAGAGGTTGTGGGATAGGTTGTAATTTAGTTGTCCTCTGTCAATTTGCTTGGTTCCCCAAGAAAAATGTATAGGTAATCCTAACTGATGAAAATAAAGACCTTAGCTCCTATCCAGTGACACCATTTTTTATTTCAAGTGTAATTTAACTAGTAAATAGGCCTCACATCAAGGTAAGAAGTAATAATGCAGCATAATAATTTTCTTCATTTGAATCAATGCACTAATGGTATGCAGACTGCAGGCCTCAGTAATTTCTAAACGTTTCATGAATTATCTCTACAGTTTTATGGCTGTATTGATTTTCAAGCTTTGGTCTACACACAATTTTTCTGTTCTTTCAAAGGCTATGATTTTATGTCAGTATTTTTCGAATGAATACTTCCTAGAAAAGGAACAAAATAGTCAAGAATATGCAGAACTACTTTAAATAGGCACTTTTCATTAGGTTCCGTCTCTCTCTCTAAACATTTATGCACATATTGTAACTCGACTATCTTGCAGTGCAACTGATGATTTAGCTGCACTTCAGCAACTGTTGGATGATCAGCCTAACATCCCCAAAGAGGAAGGTGAGTGAACCTAGTAAAGGAAATCAAGTGACTTGTTTATTGATATGGCATATGATGTGAGTTTGAATCTGTGCAAATCCCATTGTTAACGAAACTGGTGTAAGTATGAATCCAACCGTCTATCAGACAGTTCATCAATATAAGGCTGCTGTTATTCTTTCCTGTGAAATAAACATGTTGTCAGAACAAACTGTTATACCATGGAAACTGTTATACCATGGCACATTTATGAAGAGAAGAATTCAAAATGTATTTTGGTTTTGTCAACAGTTTGGTGTGGTGATTACAAAGTTCGATTTCTTTGAGAAAGGAAAGAAACACCTTTGTATTAGAGGTACCAGTCAGTGAGTATGCATTTGTCTGACATGAGTCGATAATTTTCTCAGACATGAGTATGTGGCAACCTTAAAATAGAAGGCAGAGGTTCCTTTGTTGTGGCCTGAAATAAAGATATGGATGTTGACTTGCTAATGCATGGAGAGATCTATTATGGAAGAAAAGAGAAGACCTGGATATTGCCCCTTACTCCTGGATTACCTGATCTCTAGGCTTACAGTCAACCTAGAAGGCTCAGGAGTTAACTTAAGAGATAGTAAATATTGAAACTGTATCAAATATATGAATTTTAACACTTTCAGTCTCAGATATTTAGATTCTGTGATTCCTCCTCTTCCCTTTGCTGATTAGGTATTTAGGCAGCTGTTACTCACCGTGATATTTTTTGAGTTACTGATGTTGTGTAACTTTGTTTAATCATCTCATCAAGTTATCTAAGTCCTGTAAGTTAAAGCTCCTCAGAAATATACTAGGTGAGAGCAACCATATGAAGCCTCTTAACCATGTTGTTTTGCTTGTAGCTACACTTAAACTTTATGCAGTAAGGTCTTGCTAGCTTGAATCGAGTTTCAGTTGTGTAAAAAAAGAAGCTTGTAAAGCATTGTTTTAACTGCCCACCATACATGTTATTGAACCCCAACTTCGACATTCTAATTGCTTCTCTTCTGCAGTTCAAGTCATTTTTGAAATCATATTTGCTGAAGAGATAGCTTGATGTCTACTAAGCATGGATCCTTGGACTGATGAAGTGCTTTTGGAACTTGCAATGTGTTTTAAGTTAAGGAAGACTTCAGTTCTGGCTAAAGAGCAGGAAATATCTTGCACTTGGGTGCTACAGTGCTCGAACTCTTCAAGTGTATGTGTCGGA</genome_strand>
        <mrna_strand>AAGGAAGAGATGGAGAAGTGGAATGAGCTACAATCTCGATTACTATCTCAATTCAACAATGCTTCTTCCATCATTCAGAGGTTACAG...................................................................................................................................ATTCTTCAGGATTCTAAGAACTATGGTGCTTTGACATGTGTTGAAGCCATTCAGGAAGCTGTCTTGCTGAAACAGATGAATTCTCTACAAAATATCTTGCTTTCAATGAATGAAACTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAAGTTTCATGTGGTTGTGTTGTCGCTTGATAAGATGGTTCGTGATGGTAGACAGCTCATAAAAGGGGGATCCGTTCAGAAGAATGTGAAACAGCTACAGCAACACGTCGGGATGAAGCCTAGCATTGCTGATTGCTTGGATGGGCTACAACTTCTTTATGAGATGCACCAATCAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCGTCTGAAATTGTCGGTCATATCAGCAATTTCAGCATTTGCTTTACAGCCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACTGATGATTTAGCTGCACTTCAGCAACTGTTGGATGATCAGCCTAACATCCCCAAAGAGGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGTCATTTTTGAAATCATATTTGCTGAAGAGATAGCTTGATGTCTACTAAGCATGGATCCTTGGACTGATGAAGTGCTTTTGGAACTTGCAATGTGTTTTAAGTTAAGGAAGACTTCAGTTCTGGCTAAAGAGCANGAAATATCTTGCACTTGGGTGCTACAGTGCTCGAACTCTTCAAGTGTATGTGTCGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343064" ref_strand="+" ref_description="SGN-U343064        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: non-functional(evalue: 7e-07, score=57.4)">
      <seq>attttccaaaaaccagtgtatttttagaggatccgccatgggtgtggcgacatttttggagaatccaagcaacaccgctttggtgaagcagagaattatcttgattgatcactgtagatggaaggttttggaccttggaaatggaagagatgactttaagtgttgtgtatactcagtttcatttatttatatgtctgcaactttgtataaacaaccttttgttttatttttccttggtcagtagcatggttttgattaaacagctaaatccaataatacaattttaacacaaattcttcctaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="6264" stop="7166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6564" g_stop="6871" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="308" r_length="308" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U343064" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>308</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6564" e_stop="6871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCCAAAAACCAGTGTATTTTTAGAGGATCCGCCATGGGTGTGGCGACATTTTTGGAGAATCCAAGCAACACCGCTTTGGTGAAGCAGAGAATTATCTTGATTGATCACTGTAGATGGAAGGTTTTGGACCTTGGAAATGGAAGAGATGACTTTAAGTGTTGTGTATACTCAGTTTCATTTATTTATATGTCTGCAACTTTGTATAAACAACCTTTTGTTTTATTTTTCCTTGGTCAGTAGCATGGTTTTGATTAAACAGCTAAATCCAATAATACAATTTTAACACAAATTCTTCCTAATGTCT</genome_strand>
        <mrna_strand>ATTTTCCAAAAACCAGTGTATTTTTAGAGGATCCGCCATGGGTGTGGCGACATTTTTGGAGAATCCAAGCAACACCGCTTTGGTGAAGCAGAGAATTATCTTGATTGATCACTGTAGATGGAAGGTTTTGGACCTTGGAAATGGAAGAGATGACTTTAAGTGTTGTGTATACTCAGTTTCATTTATTTATATGTCTGCAACTTTGTATAAACAACCTTTTGTTTTATTTTTCCTTGGTCAGTAGCATGGTTTTGATTAAACAGCTAAATCCAATAATACAATTTTAACACAAATTCTTCCTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325270" ref_strand="-" ref_description="SGN-U325270        Tomato 200607 #1 [5 ESTs aligned] arabidopsis/peptide: AT1G20780.1 | Symbol: None | armadillo/beta-catenin repeat protein-related / U-box domain-containing protein, low similarity to immediate-early fungal elicitor protein CMPG1 (Petroselinum crispum) GI:14582200; contains Pfam profile PF04564: U-box domain | chr1:7217117-7220773 FORWARD | Aliases: F2D10.27, F2D10_27 (evalue: 2e-110, score=395) genbank/nr: gi|42562204|ref|NP_564125.2| armadillo/beta-catenin repeat protein-related / U-box domain-containing protein [Arabidopsis thaliana] >gi|8886935|gb|AAF80621.1| F2D10.27 [Arabidopsis thaliana] (evalue: 2e-108, score=395)">
      <seq>tttgtttgtattcatctaaacccctgctgccagctccttttccttcctttcttcttcctcacccccaaaccaaccacaatccatgcccccattctaaccctaattcaagattcatggaagaaattgaattgtgcttaatttcatccttgggttttgtttgagaattgatttcataaattccctttgagtcttgtgagctgagtaacacagtcttgttttcataaaggtacaaagctttaatggctgaaagctgggatgggaatcatgatcctggtagcccgtctgaggagagttaccatctcgagagactgcacatagaaccaatttatgatgcattcatatgccctttgacaaaacaagtaatgcaggatcctgttactctggaaaatggcatgacttttgagagggaagctattgagaaatggttcaaggagtgtagggatagtggaagaaagcctgtttgccctttaacacatagagatctgaaaagcacagagctgaatccaagtatagctctacgaaataccattgaagaatggaatgcaaggaatgaagctgcacaaattgatatggctcgcagatcattatctatgggtagtgcggagggtgatattatgcaggctttaaagtttgttcagcacctttgccaaaaaagtcgcgccaacaaacatgttatcaggaatgcagatctcatacccatgattgtagacatgttaaaaaccagtagccgcagagttcgatgtaaagctcttgaaacgcttctagttgtggtagaggacgatgatgacaataaggaaacaatggctgagggcgacaatgtacgcacaatagtcaaattcttatcaaatgaacaatccaaagaaagagaggcagccatttctttgctgtatgagctatccaaatctaaaaatttgtgcggaaagatcggttcagttaatggggccattctaattctggttgggatggccagcagcaaatctgagaatcttgtgactgttgaaaaggctgagaatactctggagaatctggaaaagtgtgagattaatgtaaaacaaatggcagaaaatggccggctgcaacccctattaactctactacttgaaggatcatcagagaccaaactctccatggctgttttccttggtgagctggttcttaataatgatgtgaaagtgttagtggctagaactgttggttcatcactgatcagtatcatgagacatggtaatatgtcatcaagggaggctgctctaaaatctctaaatcaaatatcatctgatgagtctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="7489" stop="12541"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7789" g_stop="8014" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8015" i_stop="8742" i_length="728">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8743" g_stop="9310" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="794" r_length="568" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9311" i_stop="9443" i_length="133">
            <donor d_prob="0.776" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9444" g_stop="9753" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="795" r_stop="1104" r_length="310" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9754" i_stop="12056" i_length="2303">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.831" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12057" g_stop="12241" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1105" r_stop="1289" r_length="185" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U325270" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U325270" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="7789" e_stop="8014"/>
          <exon e_start="8743" e_stop="9310"/>
          <exon e_start="9444" e_stop="9753"/>
          <exon e_start="12057" e_stop="12241"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTTGTATTCATCTAAACCCCTGCTGCCAGCTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAGGTATGAACTTTTTCAGCTGACTTGTGAAAAGTTCAATTCTTTTCTAGTTTTCTTACAACCCCAAGTAGAAGTTTTTGTTTACTCTTTTTTTTTTTTGCTAGTTGAAATTGGGGTTCAAATGGTGTTGGTTTATATTGACTTTAGTGATTGAACTTTGATCAGGGAATTATTAGTTTTCCTGTTGGTCATTTATTTGGATCACTGTAATTGTGATCTTTGTTTGAAAAAGTACTAGTTGTAATTTCTCTTGTTTTGTTTTGTTCCCATTTTCAATGATGGAATTTTGTAGATACAGAAAGCATGATTTTGGTGTATATCAGCAAAGAAGAATAACGACAACAAGTGAATAGAAGTGAAATTGCCAATGGCTTGATAAATAATCAAAGCTTGGATAAAAAAATTCTTTAAGTGGACAATCACTTAGGATTGTGTATAGCATCCTATGAAGTTTCTTTTAGATTTTGGATTATCTTCTCTTCCCAATTTTTTTGTTTTCTTTGTTGGTGTTATGCGGTGTTGCTTTTAACTCGATAATATAACTCCAGAAAAATGGATAAGGGACATAGTGCTTCACTAATTTAGATTTTCTTTCTCAATGATATAATGGCAGCTGTAGTATTTCATATCAATGGTAGCGAACTCTTGCTCAAGAGGTCGGTTTATGCATAGCGTGTCATTTGTTTGAGATTCTGTGTCGGGATCTAAAGTTATGTTAGATGCTTTGACAGGTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAGGTTGTAGAACTTCGGTAAAATAATATTTATGTTGTTACCAAAGTCTGTTTTATGATGTTGATTATTCCTACTGTTTATGTTTTCCCTTATTAATTTTTTCTCTTTCGTTATATGCCCTGCTCCTTTCTTGCAGGAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAGGTACTTTACCTGATGTCTGAGTGTCCATCTCTTGACCCTCTTTGTATTACTTTAAATATTTGTTCCAATTGATTGTTAAATGAAATGGAGCATGGGCCTAAGACAACCCCAAAAGTTATGTGGGATTTCCTTCATGGGCAGGGTAGGATGTACACAAACCTTACACTCAAATAAACTCCTTTTGTCTTAGGCAACATATTTTACCGTTTCTTATGATTCTAGTAGGTATTGTACACCATACACAATTAGGGATTTTGATGATGTGGGAGTTTGTAGGAAGTTCTTTACTTCAAAGCATGTCTAAACCGCGTTTAGTAGTTTTTGATAGGAAATAAACGGAGAGTTTACCCTAGAATTTCTAGACAGAATATGAAAGCCAAAAGGCAAAATATCATTAAGAATAATGGTTGAATGTATTAGAAAGCTGAAATACAGCTCTATTTATAGGAAAAAGGACTTTTAACAATCCTCATCATAATAATCTAGAACTCCTAATAACTGTAAATCAGGAAACTGATTAAAGGAACTAAAAAAATAACATTTTAAAACAAGGGAGCAATCAATTGATAAGTTACCTAAAATTAATATGACCTAACTGATACCCCAACCCTATATGACTTCTACATAACTCACCACGTAGCAGTTTGTTACAATAACAATGAACTATTAAAATGACTTTGTGGAGTGTTTCATGAAAGTTTCTATCTTCATTTCTGCATCAGCTATCCTTGGGTGGGAAAAAAACCTCATCTCATGCTTGGACACTGTCGATCAATAAGATGTCCATGCAATCCTACATCCTTTCTTCCTTTACCTTTGCCCTTCCAGTTGAAGTTTCTTCATGTGTAGATCTTCGCATTGCTTCCCCTCCTTGTCGTAATTCACTTCCTTATGTAGCATCCATTTCCTTTTCCCTGGTAATTGAAGTTCTTTGCATGTGCAGCTCTCTTAGTTTGCATCGCTTCCCTTTGTCGTAAATTCGTAATCACTTCCTTATCTAGCATATAAGTTGATTCTAAATTATCATGTGCTTCAAGTGCATACTTTTCCTCTGAAATTATGTGATGAATCATGGCATGATAGCGATGCATTGCTTGATATTCATGAATATTTTCTAACGAAATCAGATCTGAGTTTCCATTCTGTAATAGACGAAGTCTTGACTTTCAAAACCTTAGTAGTTAAACAGTCAGGTAGTCGGGGTGTACCTGATGACAGTTGCTAGTCCCTCGCCCGTCCTAGTATGCCCGTTGGTGAAAATTTGATACATTTTGGAACTCTTCTTAAACCCATGGTAGTTATTGTTTTTCTCATCATCATTCTGTATAGCCATAGAACCGTCATAGTTTAGAGGAGATCCCTAACTATGGAACGTGCTCCTATTTTTCATCATCAGACTTTAGTTATAACTTTTTTTCCTGGAATACTTGCCCTGCGTCTGAAATTTCATAGCAACTATCATGATTATTGTGTAAGATTTTTACTTCCTCATTCATGAACTTATCAATTATTACAATATTCATTAAAGTTCTCTTTAATTTCGTCCAACTCTTTCTCTAACAGCGTAGACTGTCTCGATTACACCTCTTTCTTTTTGACGTATTTTTTTGGGGGTGTCATATCTGACTCTATGGTCTTGATTATACAAATAGCTCAAGATTGCCACTTTCTACTCACTCCCTCTCTCACTCCCACGGAAAAGAGGACATGCAGGGGTAGAAAGAGAGTTCCTTATCAAGAGTGTAATTAGTAGTTTTTAGACTACTAAGCAACTCCCTAATAGGATAGGTTAGCATGATTCCTTTTATGTACAAGATCTTTTCTTTAAGCACTTACTAAGGAATCATTTGGTAAGAGATCTAGTAGTGAAGAAACTAGTTGGAACTTCAACATGTACATGGGGGAACTTGCTCACAGACATGTATGTGTATCTAGTTTTGTGTGTTTAGTGACTTTTTTGTTGGTTGGAGCTGCGGGGTGGGTGGGTTTGGAGCACAACCCTTCTTCTGATGTCCATTCAGTTAACTAAAAAATCAAATACTGTTGGCTGTTCCATACTTTCATTTAAAATTTTCTCCTTCAGACTTGTGTACTTACTAAACTGATTACTTCATGCTCTGTGTTTGAGCTAAGTGGATGTGCCCAAACTCATCACCCATGAACATTTGGGAGCAATTTCCCGCATTTACCATACTTGCACTGTTGTTTTCCTTACACTGATTACGTCTCTCTGAGCAAAATCATTTTTTTTATTTCATTCAACATCTTCCAAGTTAATTTTATTGTCCCGTCAATTGTTCTAGGATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAAGGGAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAGT</genome_strand>
        <mrna_strand>TTTGTTTGTATTCATCTAAACCCCTGCTGCCAGCTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAG.....................................................................................................................................GAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAAGGGAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323687" ref_strand="+" ref_description="SGN-U323687        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | kelch repeat-containing F-box family protein, contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain | chr5:16953361-16955712 REVERSE | Aliases: MDH9.5, MDH9_5(evalue: 5e-155, score=544) genbank/nr: Cyclin-like(evalue: 6e-180, score=633)">
      <seq>aatgtgcttattgaggcttccatttataantctggtatatgcttagatggtgtgcgcgaaatggaaaaacttgacactgacacctcgtttctggcgaatgaggcaggaaggttcattccagcgtccatggttgtttctttttggagttgtaaaagatggttgttgttccgcagaaatacatgcatttgatgtttccttcaaccaatggcacaaaatgaattctgaagttctgaaagggaggtttttattctctgttgctggtatccatgatgatgtttacgtcgttggaggttgttctagcattgctaactttgggaaggttgataagagctcattcaagacacataaaagcgtgctcgcttttagtcccttgatgagaatgtggcgtaaagctgcaccaatgaagcatgcaagatcatcccctatcttaggtacttatgagatcagttcagattgtttaattattaggaatcaacaaactcgaggagacagaagattttaccgtccaagagttggtggtgtgtctgatgtttatgaagatcctcatagactttcagtgagacgccaatttcgccattcgctggatgagaacgaggttacatttttgcccaatgtgaaaccatacaagtttgtcaaacaaaaaagcgaacattcaaataaagatcaaagacgctttctcttgattgctgtaggaggtctcggttgctgggatgagcctctggattctggggaaatttatgattccatgtcaaataaatggacagagatccagaggcttcctgtagattttggaatagcttgttcaggggttgtgtgcaatgggttgttttatgtttattcagaaagtgataagctagcagcatatgacgttgagaagggctattgggttagaatccaaactagtccattccctccccgagttcatgaataccatcctaaacttatttgctgcaatagtcggctattcatgctctctgtctcctggtgtgaaggggaaggtcagattggcaggagaaacaaagcagtaaggaaactgtgggagctagatcttatgcctctaacttggagagaagtttcaatccatccagatgccccaatggattggaatgctgcatttatagctgataaaaactctatatttggagtcgaaatgttcaaaatattcgggcaggtgctagacttcttgaccgttggagatgtaactgatgctggaataaactggagccatatctcaaggaaccgtctcgcgcaagaattggatgctgcttcttgcttgacaaaatccatggcagtagtgcatttgtaaccgatcaagaactccaactagtcacaatatatgtgcagtcattttttctctctcctttattcttttgttgtggacgtttgatgatgtttaacttaaatctatattccatttgtttctattgatgttatgcaggtcattcaattgttctgtaatttgtcttttgagcagtgaaataataaactctggtttttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="16035" stop="13937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15735" g_stop="14237" g_length="1499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1499" r_length="1499" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1500" polyA_stop="1514"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U323687" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>1499</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15735" e_stop="14237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTGCTTATTGAGGCTTCCATTTATAAGTCTGGTGAATGCTAGGATGGTGTGCAAGAAATGGAGAAACTTGACACTGACACCTCGTTTCTGGCGAATGAGGCAGGAAGGTTCATTCCAGCGTCCATGGTTGTTTCTTTTTGGAGTTGTAAAAGATGGTTGTTGTTCCGCAGAAATACATGCATTTGATGTTTCCTTCAACCAATGGCACAAAATGAATTCTGAAGTTCTGAAAGGGAGGTTTTTATTCTCTGTTGCTGGTATCCATGATGATGTTTACGTCGTTGGAGGTTGTTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAATGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGATCCAGAGGCTTCCTGTAGATTTTGGAATAGCTTGTTCAGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATATTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGAGCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTTTGTTGTGGACGTTTGATGATGTTTAACTTAAATCTATATTCCATTTGTTTCTATTGATGTTATGCAGGTCATTCAATTGTTCTGTAATTTGTCTTTTGAGCAGTGAAATAATAAACTCTGGTTTTTAA</genome_strand>
        <mrna_strand>AATGTGCTTATTGAGGCTTCCATTTATAANTCTGGTATATGCTTAGATGGTGTGCGCGAAATGGAAAAACTTGACACTGACACCTCGTTTCTGGCGAATGAGGCAGGAAGGTTCATTCCAGCGTCCATGGTTGTTTCTTTTTGGAGTTGTAAAAGATGGTTGTTGTTCCGCAGAAATACATGCATTTGATGTTTCCTTCAACCAATGGCACAAAATGAATTCTGAAGTTCTGAAAGGGAGGTTTTTATTCTCTGTTGCTGGTATCCATGATGATGTTTACGTCGTTGGAGGTTGTTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAATGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGATCCAGAGGCTTCCTGTAGATTTTGGAATAGCTTGTTCAGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATATTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGAGCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTTTGTTGTGGACGTTTGATGATGTTTAACTTAAATCTATATTCCATTTGTTTCTATTGATGTTATGCAGGTCATTCAATTGTTCTGTAATTTGTCTTTTGAGCAGTGAAATAATAAACTCTGGTTTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331237" ref_strand="+" ref_description="SGN-U331237        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | kelch repeat-containing F-box family protein, contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain | chr5:16948762-16951231 FORWARD | Aliases: MDH9.4, MDH9_4(evalue: 1e-17, score=86.3) genbank/nr: Cyclin-like(evalue: 5e-27, score=123)">
      <seq>ctacttgtaatgataattaggttcttacctattttgattacaatttgtggggattcctttttaacattctttcacatgaggaccatttcatctttctgttgttgatccattcttgcttcactcagcttaaagatgctttctttttttgatatgacaacaagatctcatatggggttctgatttttttttctttttctaaaaaaaaaaatgaatcttgattcttgattgtggatccaaatggtctatggagctcaaatgacttgattaaagaggataataagatgacatcagaaagatttacaggagaagaatctcttcaacaagatttggagtctttaagcgtgtctaaaaggttagtcagaagtgtgagccaaaagttgaaaaagaagaaccttagaagtggaggagaagaagaggatgacagcaagggcatttccttgagatgtctaacactatatggcagagggggtggttgcaaagtgggtgctgacactggtgacgacctangggattcatgcggtagaagaagatcaaatgcaagtgaggaaggcaaaggatataacccgatatgtggaaatgaagaaacgtcagtagattgcttctcttatgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="17742" stop="15538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="17442" g_stop="17172" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="272" r_length="272" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="17171" i_stop="16179" i_length="993">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="16178" g_stop="15838" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="613" r_length="341" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U331237" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U331237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="17442" e_stop="17172"/>
          <exon e_start="16178" e_stop="15838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACTTGTAATGATAATTAGGTTCTTACCTATTTTGATTACAATTTGTGGGGATTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCT-AAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAGGTTTGCTAACATGGTTTCTGTCCCTTTTCTTTTTTTCTCCATTTGGGTATGTAACTATGTTTCTGGTTTTAAGATTTGTTTGTAATAAAGTTTTGATCTTGTGAGTTCTACAGTATGGTTTCAGCTCATGTATGTTTTGAGCTTATTTTGTCTCTGTGCTGTCTAAGCTTTTGGATTTGGTTTATCTGTTTCTTTTTGTCCTGGGGTGGGTGGTTGAAGGGATTCTGATTATTGGAGATTCAATTGATTTTCTAGGTTAAGGGATTAGTGATGGATACTGGAAGATATTTCAGGAAGAAAAATAGTCAATGAAATTTGAAGCATCTTTGTTCATTTTAACCTAAAAATTGTGTATTTGCAATGTATAGGAGGTCTTTCTTTAGATTCCTAGTGGCTGTAGAGTCTTATATTTTGATCACTCTTGAAAAAGGGATATGCATTCATTTGTTAGTACCTAGGACTAGGTGATAGATTTTCCGGGCTTTTGTTCCCTCTACTCTAAGGTGTATGTGAGTTTGAGGAGTTATATTTGTCATTGCTTCAAGAAAGATTAGGTCTCTGCAAACAAGATAGAAGAACAAAAAGGGATTTTTTTGGAGTCTATAGAGGTTGCTTTGTTTATTGGTATGAGAAAGATATGACTTATTACTACTATATATTTCAAATGAACTATTCATAAAAAGAAATTTTTTTGTGTGATTATGTGTATTCTATATTTACTTACGTTACCAATTATCAATTCTTTGGTCATTGTCATTGAGATTCATGTCTATTATTATTTAGGCATATAGATATTACCTCTTTTTTTTTCTCCTTTCAACCAAAGAAAAATGATTGTGTGATGTTGGTGCTTGGTGTGTATTTGAAGAAGTATCTAGGACTTGAATTTCTAACAACATGGTCAATTTATGTCACAAACATTCCACATTATGATCATTAAACAGTGGAAAGGGATCAGTTATATATTGATTGTCTTTTTTAATACTGTTGTAGGATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGCAGAGGGGGTGGTTGCAAAGTGGGTGCTGACACTGGTGACGACCTAGGGGATTCATGCGGTAGAAGAAGATCAAATGCAAGTGAGGAAGGCAAAGGATATAACCCGATATGTGGAAATGAAGAAACGTCAGTAGATTGCTTCTCTTATGGGAT</genome_strand>
        <mrna_strand>CTACTTGTAATGATAATTAGGTTCTTACCTATTTTGATTACAATTTGTGGGGATTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCTAAAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGCAGAGGGGGTGGTTGCAAAGTGGGTGCTGACACTGGTGACGACCTANGGGATTCATGCGGTAGAAGAAGATCAAATGCAAGTGAGGAAGGCAAAGGATATAACCCGATATGTGGAAATGAAGAAACGTCAGTAGATTGCTTCTCTTATGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342819" ref_strand="+" ref_description="SGN-U342819        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:15938670-15941301 FORWARD | Aliases: T8D8.4, T8D8_4(evalue: 3e-17, score=85.1) genbank/nr: Saposin(evalue: 4e-16, score=87.8)">
      <seq>agaaatcgggcaaatggcgattaagctgtgtacgagaggtattgttttgattgttgttattgctttcttatcggttttgccagctacgctttgcatcgaagataaatgttctgcttgttccgccattgctgaggagctcgagcatggactattgaaagaaaagccaagaaaccatttagacatgagacatcgcctggattctaaaggtcagcgtgaagggaaacttattgattacaggtcaaatattaatgatcaccttattgattaataaggtctttgctaaaatcaattcctaattgctttattcttttactttttcttacaacttcaaaatctgttacccagttgtatataagaactaacctaggtcacagttcaaaaatatttctctatatcccatcaactttcaggttgaagagctcattgatctatctgctgtgttgttcgctcataccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="19395" stop="21538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19695" g_stop="19824" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19825" i_stop="20097" i_length="273">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20098" g_stop="20124" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="157" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20125" i_stop="20937" i_length="813">
            <donor d_prob="0.995" d_score="0.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20938" g_stop="21238" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="458" r_length="301" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U342819" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>458</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19695" e_stop="19824"/>
          <exon e_start="20098" e_stop="20124"/>
          <exon e_start="20938" e_stop="21238"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAATCGGGCAAATGGCGATTAAGCTGTATACGAGATCTATTGTTTTGATTGTTGTTATTGCTTTCTTATCGGTTTTGCCAGCTACGCTTTGCATCGAAGATAAATGTTCTGCTTGTTCCGCCATTGCTGTAAGTACTTACACTCGCTTTTACTCATTTTACGCCAATGTGTATATGTTTACTGTAACTTATTTCATTCGCAACGATCTAGTTTAGAGGACTTTGAAACCGATTGAAGACAAATTATTGGATACAGGGAATTTATTTAGTGGACTTCGATTATTTTGAGATTGAGAAGTAGTTGATTTGTAGTTGTATGAGCGCTATGAATACTAGATAAACAATTGATTTCACTTGTTGTGCCTGATATGGACCTGACTAGTTTGTTTTCATGCTTCTCAGGAGGAGCTCGAGCATGGACTATTGAAAGTAAGAAAATCATGTAGCTTCGTTGATGTTTCTCTCTTTTGTTGTGTATTTACCTTGTAGAAGTTTTCACAGCTCAATGTATCAGAAAAATAAAAAGGAAGAAAAACAAATTATTCTAGCTACATGCCATGATGCCATTTGACTCTATGTTTAAAATGGAGATATTTAGTATCATCTAGTATGATTTTAAAATTGGATATCAAAAAGCTGAATTGAGAATTACATTTACTTCTAACAAGGAGATGGAAATGTTTGAAGTTGTGCTGTTCAAGATATGATGTTTTTGGAAGACAAATGATGTGTTAACTCTCCATTCTGAAATGGTTGAACTACTCCATTCTTGTGTCTCACTAGCTTATGTTTATGTATAAGCCTTTGATTTATACATGGTGATGTAAGACTGCTTAAAGTTGTGCCAATACCAAACTTGATTCACATTTGAGACGAGAAGTTGTTAATACAATGTCTCATTCTCTGATATCCATATTTCATGGCTACTATGACCTATCATATTGTTGGGTCTCTGAAACTGCAATTTACTATAAGCAATCTTCTAAAAAGGACGGAAGATTCAAATGCAGGGTTACCTACATGGCTAACTCCTTGAGAAAGAGGACATAGTTAATAGTGCTATCAATAGTTTTATAGAATTTTTAAAAATCGAACTGCTAAAATTGTTGATTACTAGGATAACATATTATACATTAGAAATAAAAGATGTCTGTTCAAGTTGTCTTTCACTTATTTAAAGTAGTATAGTTTTATGTCTATTCTTTGACATTCTCACTGGGCTAATATATGTATATTTTATAGGAAAAGCCAAGAAACCATTTAGACATGAGACATCGCCTGGATTCTAAAGGTCAGCGTGAAGGGAAACTTATTGATTACAGGTCAAATATTAATGATCACCTTATTGATTAATAAGGTCTTTGCTAAAATCAATTCCTAATTGCTTTATTCTTTTACTTTTTCTTACAACTTCAAAATCTGTTACCCAGTTGTATATAAGAACTAACCTAGGTCACAGTTCAAAAATATTTCTCTATATCCCATCAACTTTCAGGTTGAAGAGCTCATTGATCTATCTGCTGTGTTGTTCGCTCATACCACA</genome_strand>
        <mrna_strand>AGAAATCGGGCAAATGGCGATTAAGCTGTGTACGAGAGGTATTGTTTTGATTGTTGTTATTGCTTTCTTATCGGTTTTGCCAGCTACGCTTTGCATCGAAGATAAATGTTCTGCTTGTTCCGCCATTGCT.................................................................................................................................................................................................................................................................................GAGGAGCTCGAGCATGGACTATTGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGCCAAGAAACCATTTAGACATGAGACATCGCCTGGATTCTAAAGGTCAGCGTGAAGGGAAACTTATTGATTACAGGTCAAATATTAATGATCACCTTATTGATTAATAAGGTCTTTGCTAAAATCAATTCCTAATTGCTTTATTCTTTTACTTTTTCTTACAACTTCAAAATCTGTTACCCAGTTGTATATAAGAACTAACCTAGGTCACAGTTCAAAAATATTTCTCTATATCCCATCAACTTTCAGGTTGAAGAGCTCATTGATCTATCTGCTGTGTTGTTCGCTCATACCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U329494" ref_strand="+" ref_description="SGN-U329494        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tttccatagaagtataaacagtttgttacgtcctcatatttcttctgatatttttaacttaatacaacatacatttgtatgtccttccctcttttttattggaccatgtatcagtcatcccatgttgtactcaagatcaactaattttatcgatgaacaatatttactctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="23310" stop="24080"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23610" g_stop="23780" g_length="171"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="171" r_length="171" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="172" polyA_stop="188"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U329494" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>171</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U329494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23610" e_stop="23780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</genome_strand>
        <mrna_strand>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322466" ref_strand="+" ref_description="SGN-U322466        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: AT2G33700.1 | Symbol: None | protein phosphatase 2C, putative / PP2C, putative, contains PF00481: Protein phosphatase 2C domain; similar to protein phosphatase-2C (PP2C) (GI:3643085) (Mesembryanthemum crystallinum) | chr2:14260500-14263069 FORWARD | Aliases: T1B8.2, T1B8_2 (evalue: 7e-122, score=434) genbank/nr: gi|15226152|ref|NP_180926.1| protein phosphatase 2C (PP2C) [Arabidopsis thaliana] gi|25352223|pir||E84748 probable protein phosphatase 2C [imported] - Arabidopsis thaliana gi|1707015|gb|AAC69126.1| putative protein phosphatase 2C [Arabidopsis thaliana] gi|17979442|gb|AAL49863.1| putative protein phosphatase 2C [Arabidopsis thaliana] gi|20259093|gb|AAM14262.1| putative protein phosphatase 2C [Arabidopsis thaliana](evalue: 5e-120, score=434)">
      <seq>ttgtgcctttattttctcagttggatttagggtctccatttttagtaatttccattcttggtttcaccccctttacttcccaaaaaaggctaatcatctgtgacttccaccaaaatttcatcttttggtgtccgcttcaaatcattctgctttccgtggataagaatctctgaggctattgaatttatgctctgggaatgcatatggctgcatatacagatttttcaccaccatttgctatagtagaagggagttacagtaaggagaatacatctgctgttaaagatgaattacttgaggaatcaaatgaaataaagacaacaagtgataagccactacgagatccttctgttgtacagtattcagtgaactctactgcacttgtaggagacgctgatttagattttgaaataactgagaagggtttccaacacccttctgagggacaatcaaactttgaaccaatatttcgttctggaagttgtgctgagaaaggacccaaacagtacatggaggatgaacatatctgtatagatgatctaatcatacatgttaatgaaattgcaggttccacttcccctgcagcattttatggggtctttgatggccatgggggtactgatgcagcattatttgtgaggaataatattctcaagttcataatggaggacccctgttttcccatgtgtttagagaaggcactcaagaatgcttttctgaaagctgactatgcttttgccgacgatagttctattgacatatactctggcaccacagcattgacagctctaatgtttggaagaaacatgatcgttgctaatgcaggagattgtcgtgctgtgctagggaaacgaggtaaagccattgagttgtctaaggaccacaaaccaaatagcgcatctgaaagacatcgaatagaaaaacttggaggagtcatatatgacggatacttaaacggacagttatctatagcacgtgccttgggggattggcacatgaaaggcccaaaaggttctgcctaccccttgagtgcagagccggagttgcaggaaacattgttgaccgaggatgatgagttcctaatcatgggttgcgatggtctatgggatgttatgagcagccaatgtgctgttacgatggcccggaaagaactcatgctacataatgacccagaaagatgttcaagagaactggtaagggaagccctcaagcgcaacacatgtgataacttaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="29531" stop="24376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29231" g_stop="29083" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="149" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29082" i_stop="28462" i_length="621">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.162" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28461" g_stop="28210" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="401" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28209" i_stop="27196" i_length="1014">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.928" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27195" g_stop="27001" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="596" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27000" i_stop="25936" i_length="1065">
            <donor d_prob="0.963" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25935" g_stop="25730" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="802" r_length="206" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25729" i_stop="25109" i_length="621">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="25108" g_stop="24676" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="803" r_stop="1235" r_length="433" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U322466" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U322466" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29231" e_stop="29083"/>
          <exon e_start="28461" e_stop="28210"/>
          <exon e_start="27195" e_stop="27001"/>
          <exon e_start="25935" e_stop="25730"/>
          <exon e_start="25108" e_stop="24676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCCTTTATTTTCTCAGTTGGATTTAGGGTCTCCATTTTTAGTAATTTCCATTCTTGGTTTCACCCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTGGTAATATAGATTCAACTTTTGATTATGAACTGAAGTTTGTTCATAAAGATCTATGTGCTAATTAGACTTATGGGTTACTGTTTTTGTTTGTTTTACTTAAGTTCCTACGGTTATTTTGCTTTGTGGGGTTGGTGAAATTTACTGAAATTATTGATCTTGCTTGGTTGTGGTGATTCTATGACAGAAAGGGGTTTCATTTCTGTTTATTTTGATTCTTGAATTGTTGCAATTTTAGAGCTTAGGGAGTTCACAAAGGTAGTCGAGGATATATCGGAAACAGCCTATATACCTTGTAGGATAAGATCTGTGTACACACTATCCTTACACCCCACTTGTGGGACTATTATGTTGTTGTTGGAGTCTAAAAGGATCTTTTTGGGTAGGGAAAGGGAAATTGGGGAGGGGATACTAGGTGGGGATCGATTAAAATGAACTGAGCTAGTAAAATTTCTTGTTTACAAGGGTCTTGAATTTGTTATCGAACCAAAGATTGAAGCTTTTTGTTTTTGTAGGACTGCTAAAGGCTTAACCTTGACAATTATTGTACTGCAAATTGTTCTCTCTCTCTTTTTGCCCTTTTACAAGTGATTGATTATCTTTTTTTGCATTTTTGGGGTCAAGCTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTAGTAAGTGGAAAGTGTTAAAGTTTGGTAGTGATCTTATCTCAGCATCTCGTTGCGTGTTTATATCCCTTATTGTGCTTGATAGTACTTTCTCCGTTCATTTTGTTTGTCTAGTTTTTACTTGGAAGTTCGCTCGGAATTTAAGGAAGTAAAGAAATTTTGAATTGTATAGTCTTAAACTAAAAGATGTATATAATGTGCCAGTATCCTTTAAGCTTGTTGTCTTAAACATGCATGCTATGTGGAAAGTTGAAATTTAAGAGTTGCTAAAAAAGGAAAGAGGCGTTCTTTTTTAAATGGATTAAAAGGGAATTAAGACAGACATATTGAAACTGAGGGAGTTCAGTTTTAGTGGGAATTGAGTTAGTGGTTAGATTTATGGAAGTCAAAGACAGTTCAATTAGATTCTTTGTTGTGCTTGATACTAACATTTAGAAAACAGTTTAGTTTTTAGCAGAAAAAACAATCTATGCGCAAGTAATTGCAGCTTTCGATTGGTGGTAGTAAACTAAATATGCATAAGTGATGAGGAAACGACAGATAGAATGTAGAATAAGAATACATGTATTAGTCTACGTGGATAAGCATATCTAAAGACAACTCGTTGCATTACATTCTACATGTCATTATTCATTGCATAACATTTCCTACAGTTTATTATTCATCGCAAAAATAGCCCATGCATTATAATCTTTACGTAACTAGTGAGAGAATCAAATGACTCCTAAGATCTAGATTGCATGAGTAAAGCAATTTATTAGTTGATCTGATTCTGCCTAAGAACGCAACATTTATGTTCCCCATGCCTTCCGGGTTTTTTTTCCTTCTTTTTTGGGTGGGGGTATTTTATTAAAGATCGAAGCTATAAAAGTTGTAGCAGTTAATCTCTTTATCTGCTAATAACTACATTAATTACTCCCCTTGAATTTTCTTCCTTTTCCATCCTTTTGATTTTTCAAACTTGTTTGTACCTTATTAAGGTCATGCAGCTAATATTATTTTTCTTACATCTACTAGGATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGGGTTTGTAGCTTTTGCACTTCATTTGATTATGCATTTTTGCATTGTAGATAGAAATACCCATATAATGTGCTATGTGTAGTGATGTTTCACCCTAAATGAATTACTCTTTTGTGTTGGTTATGTTCCTCTCATTGAATAGCATGTGAAGCAATTCATTTCAGATTCCCCTCACTGAATCAATCAAAATCTGACAACGGGGAGTTCAAGGGGGCCTGTTGGCCTTTATTGTCTATAGTTAGTAAGATAATAAGTGAGAAACAAACTTCGTAAAATGGAAAAATGAATGGCGAAGGATAGATAGAGGTCTTAAGTGTACAAAACGAGATAGACAAGAATCAGGAACTGGTTTGGGCTTTTTGAGCGCTCAGCAGTATCAACTATCAAGTGAATGATGACGTAGAAGGAAATGCTGTATGGATTGCTCCTTAGAAGGCTTCATGGGATCTATGATGTTCTTCAAGTGTGCAACATGTCCTCCGTCCAAACTCGTTTTAAATTTTCCTAGTCCGTAAAAGCATCAAACCAACTCTGCAAGCTTTTCTGGGATATACTCCTAACATATTTAAATTACCAAAAGATTTATTCTTTTCGAAATGCAGTAGGCTTTTTGGATGCATATGCCTAGGGAAAAGTCAAACTATGAAGACCTATCTGCTCTTGACACTTTGCTGAAGTACCACTGAAGCCGAGGATTCCTGAAAAAAAAAAAGAAAATCGATAATGAATTCTAAAAGTGGCCTAGTTCAATTTAAGAAAGATAACGGCAACTCAAATTTTAGTGTGCATACAGGTGGTAATTTATTTAGGCTTCATGCAAAATTGTAATATTTGGGTAAATTTACTTTCTTTATGTTTGCTTATGCCAAATAACTCAGGAGTTAGAGTTGAGGTGTAGCTGATTGATTGGTTGCTTTGCTGCGTATCTCATGGATTGTTCCATAAATGATATGCACCTAGTTTTCTTTTTGTTTCTCGATTAAGTCGTGTCATCTGGTCCTTGCACCGTTACTTGTACCTCCATCATTGGTATGATTTAGTAATAACGCTGTTACTAATTCCTTACAGGTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAGGTAACTAGATCTTCTGTTTCTTGTTTTCATATTTCTTGTCTAAATTATTTCTTAGAACAATGCAATATACTTGCTGAAGGGAAAAATAAGAACATTGGTTTTGTCTTTTATGTTTACTAAAAGCATGAAGGCAAATACACATATTTAGTTCCATTCATCTGGGCTATTTCTCCATGTGAAGCTCAATACGTATAACTGCTCTGGTTTCCATTTCATGTTGAAAGTGCAGATGCGATCATGCCGACATTTTGAACTATTACTCCCTCCTTTTCAATTTCTTTATGGTTTTGACTTTGACACAGAATTTGAGAAAGTCAACAAGACTTTTGAAACTTGTGGTCTTAAACTAAAGAATGTAGAATGTACCAAAATGGAAGGGACATTCCTTTTGAAACGGATTAAAAAGGGAAGTACGACAAATAAATTGAAACGGAAGGAGTAGAATAAGCTGAATTTGTTTTCATGAAATATTTTCTGAATGCATAGTCTGTTGTCTTCTGCTCCATGATCCACATTAACTGCTGTTGACAACATTCCTTATGTTTCTGATCGTTATGAGTATTTTATTCAAACAGGATTTGGTGCTGAATAGTCTGTAGTGTGATATGATTTGTTTTGCAGAAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTAGGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAAAGGCCCAAAAGGTTCTGCCTACCCCTTGAGTGCAGAGCCGGAGTTGCAGGAAACATTGTTGACCGAGGATGATGAGTTCCTAATCATGGGTTGCGATGGTCTATGGGATGTTATGAGCAGCCAATGTGCTGTTACGATGGCCCGGAAAGAACTCATGCTACATAATGACCCAGAAAGATGTTCAAGAGAACTGGTAAGGGAAGCCCTCAAGCGCAACACATGTGATAACTTAACA</genome_strand>
        <mrna_strand>TTGTGCCTTTATTTTCTCAGTTGGATTTAGGGTCTCCATTTTTAGTAATTTCCATTCTTGGTTTCACCCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTAGGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAAAGGCCCAAAAGGTTCTGCCTACCCCTTGAGTGCAGAGCCGGAGTTGCAGGAAACATTGTTGACCGAGGATGATGAGTTCCTAATCATGGGTTGCGATGGTCTATGGGATGTTATGAGCAGCCAATGTGCTGTTACGATGGCCCGGAAAGAACTCATGCTACATAATGACCCAGAAAGATGTTCAAGAGAACTGGTAAGGGAAGCCCTCAAGCGCAACACATGTGATAACTTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342498" ref_strand="+" ref_description="SGN-U342498        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutamate receptor family protein (GLR3.3), plant glutamate receptor family, PMID:11379626 | chr1:15975929-15979143 FORWARD | Aliases: T8D8.1, T8D8_1(evalue: 8e-68, score=253) genbank/nr: Ionotropic(evalue: 4e-67, score=257)">
      <seq>gtatagtatgctttggagtgtgttcagacgggttgagtaggaatggcacttcaaggcctgctgttgtgagtgttggagctatatttacatttgactctacaattggaagagctgccaagattgcaattcaggaggctgtgaaagatgttaattccaactctagcatcctccaaggaaccaaacttgttgtgcagttgcaaaattccaattgcagtgggtttcttggcatggttggagccttgaaatttatggagactgatgttgttgcagtaataggcccacaatcttctgtagttgcccataccatatcccatgttgccaatgaacttcaagttcctttcttatcatttgctgctactgatcccacactctcctctcttcagttcccttattttcttaggacaactcaaagtgatctatacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="32477" stop="33814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32777" g_stop="33013" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33014" i_stop="33328" i_length="315">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33329" g_stop="33514" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="423" r_length="186" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U342498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32777" e_stop="33013"/>
          <exon e_start="33329" e_stop="33514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATAGTATGCTTTGGAGTGTGTTCAGACGGGTTGAGTAGGAATGGCACTTCAAGGCCTGCTGTTGTGAGTGTTGGAGCTATATTTACATTTGACTCTACAATTGGAAGAGCTGCCAAGATTGCAATTCAGGAGGCTGTGAAAGATGTTAATTCCAACTCTAGCATCCTCCAAGGAACCAAACTTGTTGTGCAGTTGCAAAATTCCAATTGCAGTGGGTTTCTTGGCATGGTTGGAGGTACTTTGTTCACTGTTCATTTCCTTTAATATCCATTACACTGCCTTAGATGCTGGAAAATTTAGAATCAGGAAATAACAAGAGGAAACATAGTTAGTTCCTCCTTTAAGGAAACCAGTGATGCTTGGAAGTCATTGCTAATGTCAACACTCATTGTAGTTCATCATTCTCAGTTAATATAGATAGCTGATGGTTTGTGCTATTAGAATATGTGGCATTCATTCAAAATTTGATTCACATAGCCTAGAAAAGTTTCCAATTCTCTCATTTAAGGGTACATTTGAATATCTAGACTAACACTTCTTTTATTTGCAGCCTTGAAATTTATGGAGACTGATGTTGTTGCAGTAATAGGCCCACAATCTTCTGTAGTTGCCCATACCATATCCCATGTTGCCAATGAACTTCAAGTTCCTTTCTTATCATTTGCTGCTACTGATCCCACACTCTCCTCTCTTCAGTTCCCTTATTTTCTTAGGACAACTCAAAGTGATCTATACC</genome_strand>
        <mrna_strand>GTATAGTATGCTTTGGAGTGTGTTCAGACGGGTTGAGTAGGAATGGCACTTCAAGGCCTGCTGTTGTGAGTGTTGGAGCTATATTTACATTTGACTCTACAATTGGAAGAGCTGCCAAGATTGCAATTCAGGAGGCTGTGAAAGATGTTAATTCCAACTCTAGCATCCTCCAAGGAACCAAACTTGTTGTGCAGTTGCAAAATTCCAATTGCAGTGGGTTTCTTGGCATGGTTGGAG...........................................................................................................................................................................................................................................................................................................................CCTTGAAATTTATGGAGACTGATGTTGTTGCAGTAATAGGCCCACAATCTTCTGTAGTTGCCCATACCATATCCCATGTTGCCAATGAACTTCAAGTTCCTTTCTTATCATTTGCTGCTACTGATCCCACACTCTCCTCTCTTCAGTTCCCTTATTTTCTTAGGACAACTCAAAGTGATCTATACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346929" ref_strand="+" ref_description="SGN-U346929        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutamate receptor family protein (GLR3.3), plant glutamate receptor family, PMID:11379626 | chr1:15975929-15979143 FORWARD | Aliases: T8D8.1, T8D8_1(evalue: 4e-51, score=198) genbank/nr: Ionotropic(evalue: 2e-50, score=202)">
      <seq>tcatatggctctttgtcgttttgataataaattcaagttacacagcaagtttgacctccatcctcactgtgcaacaattatattctcctattaaaggtattgagagcttgaaagaaactgatgaaccaattgggtaccaagttggttcttttgcagaaaggtatttggaggaaattggtataccaaaatccagacttgttccccttgggtcaccggaagaatatgctacagcacttcaacgtggtcctgcaaacgggggtgtagctgcagtggtggatgaaagaccatacgttgaacttttcctgtcaaaccagtgcaaattcaggattgtaggtcaagagttcaccaaaagtgggtggggttttgtaagtttctctattcctacagtttttttcttttttcctcattctgtgtgccctcctgccttttctatttccttaatcctaattctgtaagtacaccttggtttattttgttgactaaaatcttgatgtcctggacatcttggtaggattttgtagcatatcactaagcacacttctatttcaagccgagtatttgtgtaaaaatcattgacgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="35959" stop="37138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36259" g_stop="36838" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U346929" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346929" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36259" e_stop="36838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATATGGCTCTTTGTCGTTTTGATAATAAATTCAAGTTACACAGCAAGTTTGACCTCCATCCTCACTGTGCAACAATTATATTCTCCTATTAAAGGTATTGAGAGCTTGAAAGAAACTGATGAACCAATTGGGTACCAAGTTGGTTCTTTTGCAGAAAGGTATTTGGAGGAAATTGGTATACCAAAATCCAGACTTGTTCCCCTTGGGTCACCGGAAGAATATGCTACAGCACTTCAACGTGGTCCTGCAAACGGGGGTGTAGCTGCAGTGGTGGATGAAAGACCATACGTTGAACTTTTCCTGTCAAACCAGTGCAAATTCAGGATTGTAGGTCAAGAGTTCACCAAAAGTGGGTGGGGTTTTGTAAGTTTCTCTATTCCTACAGTTTTTTTCTTTTTTCCTCATTCTGTGTGCCCTCCTGCCTTTTCTATTTCCTTAATCCTAATTCTGTAAGTACACCTTGGTTTATTTTGTTGACTAAAATCTTGATGTCCTGGACATCTTGGTAGGATTTTGTAGCATATCACTAAGCACACTTCTATTTCAAGCCGAGTATTTGTGTAAAAATCATTGACGTC</genome_strand>
        <mrna_strand>TCATATGGCTCTTTGTCGTTTTGATAATAAATTCAAGTTACACAGCAAGTTTGACCTCCATCCTCACTGTGCAACAATTATATTCTCCTATTAAAGGTATTGAGAGCTTGAAAGAAACTGATGAACCAATTGGGTACCAAGTTGGTTCTTTTGCAGAAAGGTATTTGGAGGAAATTGGTATACCAAAATCCAGACTTGTTCCCCTTGGGTCACCGGAAGAATATGCTACAGCACTTCAACGTGGTCCTGCAAACGGGGGTGTAGCTGCAGTGGTGGATGAAAGACCATACGTTGAACTTTTCCTGTCAAACCAGTGCAAATTCAGGATTGTAGGTCAAGAGTTCACCAAAAGTGGGTGGGGTTTTGTAAGTTTCTCTATTCCTACAGTTTTTTTCTTTTTTCCTCATTCTGTGTGCCCTCCTGCCTTTTCTATTTCCTTAATCCTAATTCTGTAAGTACACCTTGGTTTATTTTGTTGACTAAAATCTTGATGTCCTGGACATCTTGGTAGGATTTTGTAGCATATCACTAAGCACACTTCTATTTCAAGCCGAGTATTTGTGTAAAAATCATTGACGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327732" ref_strand="+" ref_description="SGN-U327732        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | glutamate receptor family protein (GLR3.3), plant glutamate receptor family, PMID:11379626 | chr1:15975929-15979143 FORWARD | Aliases: T8D8.1, T8D8_1(evalue: 6e-41, score=164) genbank/nr: gi|15217450|ref|NP_174978.1| glutamate receptor family (GLR3.3) [Arabidopsis thaliana] gi|25405080|pir||C96495 probable ligand-gated ion channel [imported] - Arabidopsis thaliana gi|12322630|gb|AAG51316.1| ligand-gated ion channel, putative [Arabidopsis thaliana](evalue: 4e-39, score=164)">
      <seq>cagaaatcatgatgttttgctctgtcattttgtgcttgttattctgattcaggcatttcctcgggactctccgttggcagtcgacttgtcaactgcaattttaacactatcagagaatggagacctccagcggatacatgacaagtggttagcaagaagtgcatgcagtttagacaatgctgagcttgaatcagatcgccttcacttgagaagcttttcaggcctctttcttatatgtgggattgcatgctttattgctctcctaatatatttcatccagattctgcgtaaattttgccggacttccaacgctgcagttgattcggatggtcagaatactacttcacgttccaaacgtcttcaaactttgctgtcaattattgatgagaaatcaaatagaggcagcaagcgaaggaaaatcgacagatcagtttctgatgacaacatagaaaatgacttgggaagggattccaggtggatagaaacacaggttccttctcaaaatgaaattcattagttcaattatgccagcttacatttcttatagggttcttaccaaagtttcaattttgacaacatagaattgtttataagattcagctgttaactgtatattagcacaatttttacacaatcaatatcatttagtagcttcaactctgatactttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="36600" stop="37871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36900" g_stop="37571" g_length="672"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="672" r_length="672" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U327732" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36900" e_stop="37571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAAATCATGATGTTTTTCTCTGTCATTTTGTGCTTGTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTCTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACCAAAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTTAACTGTATATTAGCACAATTTTTACACAATCAATATCATTTAGTAGCTTCAACTCTGATACTTTTTC</genome_strand>
        <mrna_strand>CAGAAATCATGATGTTTTGCTCTGTCATTTTGTGCTTGTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTCTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACCAAAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTTAACTGTATATTAGCACAATTTTTACACAATCAATATCATTTAGTAGCTTCAACTCTGATACTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326082" ref_strand="+" ref_description="SGN-U326082        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein / Ire1 homolog-1 (IRE1-1), identical to Ire1 homolog-1 (Arabidopsis thaliana) GI:15277137; cDNA Ire1 homolog-1 GI:15277136; | chr5:8316446-8319980 FORWARD | Aliases: K16H17.7, K16H17_7(evalue: 2e-54, score=208) genbank/nr: gi|10177897|dbj|BAB11229.1| gb|AAD32909.1~gene_id:K16H17.7~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 1e-52, score=208)">
      <seq>ccaaatccagagctaaaggccaaaagcagtagaggtattgcattcatcctttcttttggaattctgagatgcgactctcattcctccgagacgccagtgatagagtggaattagaggatagagaagatggatctgaacttttgggagcactggaaagtgttaagaccgtggcattgggtggtctgtggaatgataaaatggatagtgcatttatcaatgacattggtcgctacaggcgttacaaatacgatagtgtccgcgatttgttgcgtgttatcagaaataagttaaaccattacagagagctttcaaaggaaatacagggaattcttggacaggttcctgaaggttttgagagctatttctccaccaggtttcctagacttgtaattgaggtctacaaagtacttcatacctattgtttagaggaagatatctttcaaaaatacttcaaaggcaatcaaaattagctcaatactatctacatattaaacctatgtacatattgtaatttataattataataattatcatacttattaataagtcaaattaaaaagttgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="38640" stop="37522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38496" g_stop="38480" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38479" i_stop="38340" i_length="140">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38339" g_stop="37825" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="533" r_length="516" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="564" polyA_stop="576"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U326082" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.924" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38496" e_stop="38480"/>
          <exon e_start="38339" e_stop="37825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAATCCAGAGCTAAGGTAATGACATCATGGTTTTGAAATTTTTGGTCCTCTACATAGTATTGGTTCTCTGATATTATAAATTTGTAAGTTTTGTGTCATTGATATTATATTTGTACTTCCACTGATGGGGGCGTATGCCTTTCTGTTATCCCTTAGGCCAAAAGCAGTAGAGGTATTGCA-TCATCCTTTCTTTTGGAATTCTGAGATGCGACTCTCATTCCTCCGAGACGCCAGTGATAGAGTGGAATTAGAGGATAGAGAAGATGGATCTGAACTTTTGGGAGCACTGGAAAGTGTTAAGACCGTGGCATTGGGTGGTCTGTGGAATGATAAAATGGATAGTGCATTTATCAATGACATTGGTCGCTACAGGCGTTACAAATACGATAGTGTCCGCGATTTGTTGCGTGTTATCAGAAATAAGTTAAACCATTACAGAGAGCTTTCAAAGGAAATACAGGGAATTCTTGGACAGGTTCCTGAAGGTTTTGAGAGCTATTTCTCCACCAGGTTTCCTAGACTTGTAATTGAGGTCTACAAAGTACTTCATACCTATTGTTTAGAGGAAGATATCTTTCAAAAATACTTCAAAGGCAATCAAAATTAGCTCAATACTATCTACATATTAAACCTATGTACATATTGTAATTTATAATTATAATAATTATGA</genome_strand>
        <mrna_strand>CCAAATCCAGAGCTAAA............................................................................................................................................GGCCAAAAGCAGTAGAGGTATTGCATTCATCCTTTCTTTTGGAATTCTGAGATGCGACTCTCATTCCTCCGAGACGCCAGTGATAGAGTGGAATTAGAGGATAGAGAAGATGGATCTGAACTTTTGGGAGCACTGGAAAGTGTTAAGACCGTGGCATTGGGTGGTCTGTGGAATGATAAAATGGATAGTGCATTTATCAATGACATTGGTCGCTACAGGCGTTACAAATACGATAGTGTCCGCGATTTGTTGCGTGTTATCAGAAATAAGTTAAACCATTACAGAGAGCTTTCAAAGGAAATACAGGGAATTCTTGGACAGGTTCCTGAAGGTTTTGAGAGCTATTTCTCCACCAGGTTTCCTAGACTTGTAATTGAGGTCTACAAAGTACTTCATACCTATTGTTTAGAGGAAGATATCTTTCAAAAATACTTCAAAGGCAATCAAAATTAGCTCAATACTATCTACATATTAAACCTATGTACATATTGTAATTTATAATTATAATAATTATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330652" ref_strand="+" ref_description="SGN-U330652        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | protein kinase family protein / Ire1 homolog-1 (IRE1-1), identical to Ire1 homolog-1 (Arabidopsis thaliana) GI:15277137; cDNA Ire1 homolog-1 GI:15277136; | chr5:8316446-8319980 FORWARD | Aliases: K16H17.7, K16H17_7(evalue: 1e-54, score=208) genbank/nr: gi|10177897|dbj|BAB11229.1| gb|AAD32909.1~gene_id:K16H17.7~strong similarity to unknown protein [Arabidopsis thaliana](evalue: 2e-54, score=213)">
      <seq>tatcatcagtcacctgctcctaccaaaaacaattttctggagatgaccaggatgccggttgtttaagtgactgcactgtaaaagttcaatggaaatctggagacaaggatgacttcccgttatggaagcccagtggatatccttcagctcacctgttaaaattgatgagagatatggttcatggccttgctcatttgcatgaactgggaattgtacaccgtgacttgaagcctcagaatattcttatagtaaaagagagatctgtaagtgcaaagctttcagatatgggtatcagcaagcatcttgcaggggacatgtcttcattaaccaaaaattccactggctctgggagttcaggttggcaagcacctgagcaacttcgtcatgaacggcagacacgtgctgtggatttattcagtttaggctgtgtactctttttctgcataaccgggggaaaacatccgtatggggatagttttgaacgtgatgtaaatatagttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="40965" stop="38267"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40665" g_stop="40497" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="169" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40496" i_stop="39268" i_length="1229">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.653" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39267" g_stop="39095" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="342" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39094" i_stop="38727" i_length="368">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38726" g_stop="38567" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="502" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U330652" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40665" e_stop="40497"/>
          <exon e_start="39267" e_stop="39095"/>
          <exon e_start="38726" e_stop="38567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAGGTTGGTTTATTGTTATTATCGGTTTCTGATTTACTTTTATTAATCTGAATTCGTTCATTGTGTGGAGACTCACTTCAATGTCAAGTGTTCATTCTCATTGATCAGTCAATAACAAGTGCATGATCTATGGCTTTCTCAGCAAGATGACTCTAAACTGATAGTCACTCTCGTTAAACTGGGTAATCGGTACAATTTTCATTTGACATAACCATGCCTGGGAAACAGCTTCTCTTGGATTGTCCGACTCTGGGGCATGTCTAACTGGACTTCTTGAATGTTTATCCAACTGTTAATTCATATTTTACACGGTTCACGTCAATTTTTTCTTGAAGAATTGATCGAACAATGTGACATAGGAAATGTTCATGGTGACTTGAATCTTTTATATTATTGGTGTTGGATACAGAAATAGGTAAGTATATATTGAAGCTGGTTATTCTATAGCTTTTACTTCAGAAATTAAAAAATCATGTAGGGGTCCCAATTCGAACTGGAATAGACCATTAAAGTTAACATTGAAATAGTTCTTGTATATATGTACAGAATTATTTTGATGATAAATCTTTACCCCCCCACCCCCCAAAAAAATAAAATTATGTTGACAATTGTTAAATCTTTATCATTTTGCTTAGTGAACTGAACTCCTAGTGGTAACTCATGCTTTTTTTCATCAAATTACGCTAGAAATGTGTTCTAAAAAAGTAATTATTTATAGTGGATGATGTCAGGGCAGTTTTATCCTAATGATCCTTGTCACACCTGGTGAATTGAAGATGGAATATTTGTTACTACATGTAACATTGTGATTTACAGACAATTCAATGACGACTCTCAGGCAAATGAATCACAGCCTTTGGAACATTTAAGCTGAGAATTCTCACATCTATATTGCTAAAGCATCTAATAGGCTGTCATGGGAATTTCAGTATTCCCATGAAGCCTTTGAAGTTCATCTCATCTTTTTGTTAGAGTACTATATTATTTTGATCTCACAAAATATAAAGGCAATTAGCCTCTGAATCATTTGTTGAATCACATTTTATTTATTTGTTTGCCCTTTTGAACGAATACATACTAATTTTTCACACACATTTCAGGATGTGGACATTAGATTTTTTATGTATTTTACGTGCCTTTCGTTTCACCATTATTTAGTTACAGCTCTTTCAGACGTATTTGAGAGGCATTCAGAATTAACAATTAAGCCCTTTTATGATTGGTAATGGCAGAGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAGGGGACATGTCTTCATTAACCAAAAATTCCACTGGTAAGCCTTAGTTCAGAACTTGCATTTTTTTCTCTTGTGACAATTGACATTTTCAAGTGCATTACCCAGCCCCAATGCTACCTTATTTACTCTGAGTGGAGGGTGAGGGAGGCCTGCTTTTGTTGCTTTTTATTTTTCAATGTAATTAATACAAGTCCCATTCACTTCCTTTTTGTCCCAAATTTTTTGAAAAACTTCTATTCATTTCAATATGGAGTTGATAAATCTATATAGTGATTAGTGAAGCCATGCATTGGAGGCAGGCATTTCATTTGAAAATAGGGATATCTTGAAACTTTCTTCTGCATATCTATTTGCAACTATGTACGTGCATGAATGTCACTTATCCCGTGTTACAATATCTGTAGGCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACGGCAGACACGTGCTGTGGATTTATTCAGTTTAGGCTGTGTACTCTTTTTCTGCATAACCGGGGGAAAACATCCGTATGGGGATAGTTTTGAACGTGATGTAAATATAGTTAA</genome_strand>
        <mrna_strand>TATCATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAGGGGACATGTCTTCATTAACCAAAAATTCCACTG................................................................................................................................................................................................................................................................................................................................................................................GCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACGGCAGACACGTGCTGTGGATTTATTCAGTTTAGGCTGTGTACTCTTTTTCTGCATAACCGGGGGAAAACATCCGTATGGGGATAGTTTTGAACGTGATGTAAATATAGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312804" ref_strand="+" ref_description="SGN-U312804        Tomato 200607 #1 [58 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde-3-phosphate dehydrogenase B, chloroplast (GAPB) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit B, identical to SP:P25857 Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) {Arabidopsis thaliana} | chr1:16129874-16132283 FORWARD | Aliases: F13A11.3, F13A11_3(evalue: 0, score=692) genbank/nr: gi|77540212|gb|ABA86964.1| glyceraldehyde-3-phosphate dehydrogenase B subunit [Glycine max] (evalue: 0, score=731)">
      <seq>gggcgattggcggccaatcggccgaattgggtgggaacaaaccatattttaaaccatatataccaaaaaagaagtagctttcctcaagatcatttagttgcagccatggcttctcatgcagctttggcttcttcacgaattcctacaagcacaaggcttccttccaataagaactcctactcattccccacacaatgtttatccaagaaatttgaagtagctgaattttctggtctaagatcaagtggatgtgtgactttttccaacagagagtcttctttctttgatgttgtctctgcacaactcactccaaagactacaggatcagccccggctaagggagaaactgttgctaaattgaaggttgctatcaacggttttggtagaattggtaggaatttcctccgatgctggcatggtcgcaaagactcaccacttgatgttgtggttgtcaatgacagtggcggtgtcaagaacgcatctcacttgctaaagtatgattcaatgctgggaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcagctcaaggggaagctgaatggcattgctctccgagtgccaacacctaacgtctcagtcgttgaccttgttgtcaacgtcgagaagaaaggaattacagctgaggatgtgaatgcagcattcagaaaggctgctgatggtccactgaaaggcatattagatgtgtgtgatgcccctcttgtttcagttgacttccgatgctctgacgtttcatccaccatcgactcctccttgaccatggtcatgggagatgatatggtcaaggtcgttgcttggtatgacaacgagtggggatacagccaaagagttgtggacttggctcatctagtagcaagcaaatggccaggtgttgcagcaccaggaagtggagacccattggatgagttctgtgagacaaatccttctgatgaggaatgcaaagtctatgaataagacatttttgttataatttgagaacaacagtagttttgttatctacatgtttgatgtgtaaaactgagtgggaagtcccattagcttaagaaaataatatcacactcgtatgaattctttctatatcgatttaatcgagattgagaataaaaaaaaaaaactcaattctgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="49536" stop="46013"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49231" g_stop="49054" g_length="178"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="207" r_length="178" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183">
            <donor d_prob="0.984" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48870" g_stop="48763" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="315" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48401" g_stop="48240" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="477" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48143" g_stop="47976" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="645" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47621" g_stop="47461" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="806" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.952" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47376" g_stop="47315" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="807" r_stop="868" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="47233" g_stop="47184" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="869" r_stop="918" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.903" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47078" g_stop="46672" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="919" r_stop="1325" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="46596" g_stop="46295" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1326" r_stop="1627" r_length="302" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1630" polyA_stop="1647"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U312804" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1598</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312804" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49231" e_stop="49054"/>
          <exon e_start="48870" e_stop="48763"/>
          <exon e_start="48401" e_stop="48240"/>
          <exon e_start="48143" e_stop="47976"/>
          <exon e_start="47621" e_stop="47461"/>
          <exon e_start="47376" e_stop="47315"/>
          <exon e_start="47233" e_stop="47184"/>
          <exon e_start="47078" e_stop="46672"/>
          <exon e_start="46596" e_stop="46295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAGGTTTCTTTTCTTTCCTTTCCTTTTCAGTACTAAGATGCTAAGTATTGTCGCACTGGTGTGGTGTCAGATCCTCTGAAAATCCACTACTTTTGAAAGATCATATACAATCTCGGAGTCTGAGCAACATAGCTAATATGTTAGGAAATTATGGTCTTTCTGAATTTTCATGCTTTGTTTTTGCAGAAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAGGTAGCTCTTTGATTTCCCTACTTTTCAGCTTTTCTTATAAAGAATACTAAGCTCCCATTAATTGGCTTAGATGTTGAAGTTGAAACTTGAAAATCTATGTACAATAGTACCTACTATATATGTACCTTAATCCCAAAATCTAGCCAAGCTATAGCTTCTCTGTAGGTGGATTTACGCCATCAATATATTTTAACATGTCGTAGCAGGTTACTAATCACAGGGATATCAACGATTAGCTGTAGTTATCTTTTAAATGATCTTAATTATAGCATAATACTGTCACTGTAGGAAGGAAGTTTAAACTCTTTATAGGGTAGTAGGCTTGTGGAACTGATCTGTTTTTTATGGTATGAAAAACTAGACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAACGTGAGTCCAAATTCTTTGTTTTCGTTTGTGGCAACAATTAATTCAATTTAACTTCATTATTAATGGTTGAGTTTTGCTGCAAAATGCACTATGCAGGCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAGGTAAACTTCTTGTCTGCAGTCTGTTGAATACGTAAATAAGAAAATAAAAGTGTGTTCTCTTTTAACAGTTTAAGTTTTTAGATGAGTTGTTCATGCATTGTTAATGGTGTGATAACTGATATCATGTTCATTGAAGAAGTACTTTTATCCTGTTTAGGTTCAAATACTGGTTCTCATTGCGAATTTTAGAAATTGTATGCATAACCAGGATTAAATGATTTGCATGATAAGATTGAATTAATGAGGATCAAGGTAGACAAGTTGCAGTCCTCTGTGATCGGTGGAGTTCAAACATCTTACAACTCGATGATTCTGAGAAATGGTTCCGAGCTGATTATATTATTTGAATCACAGGGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAGGTCAGTCTTTCATCCTCAACTATATAAGACCTTCACAGTTTCATATTGTTCAAAATTTATAAGTTCTTTGCTTTGCAACTGCAGCAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTGGTAAGCAGCAAATTGTATTACAATAGCACTACATTGGCACAAATTTGTTTATTGTGTTAACTATTTCGATTCACATTTCAGGAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAGGTAATAAATCAATGAAACACTCACATATATGGTGTCTTCATGTCAATATATTGATGGTAGAAATATGCAACTCCGCACTTATATTGTTGATTCTGTGGCATTCAGAGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAGGTAAAGTTCAGTAACCATACGTGAAATTAACCAAAAACTTTCATGATGCTCATATATTATTTTTGTGAATTGCAGCCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</genome_strand>
        <mrna_strand>GGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG.......................................................................................................................................................................................AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG.........................................................................................................................................................................................................................................................................................................................................................................ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC................................................................................................GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG..................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG....................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG.........................................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG...........................................................................CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAAAAAAAAAAACTCAATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U318063" ref_strand="+" ref_description="SGN-U318063        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein localized to the inner membrane of the chloroplast. | chr1:16128235-16129727 FORWARD | Aliases: F13A11.2, F13A11_2(evalue: 3e-33, score=138) genbank/nr: gi|18400762|ref|NP_564482.1| expressed protein [Arabidopsis thaliana] gi|25373224|pir||B96497 unknown protein [imported] - Arabidopsis thaliana gi|12323056|gb|AAG51516.1| unknown protein [Arabidopsis thaliana] gi|13878131|gb|AAK44143.1| unknown protein [Arabidopsis thaliana] gi|17104807|gb|AAL34292.1| unknown protein [Arabidopsis thaliana](evalue: 2e-31, score=138)">
      <seq>ggaaaaatataaacgtactataacccattaatcacttctatggtgtaatcttctccacaatccaaatttgtttcactgcaaaaatgactgctctttcaaattcattgattttatccaaacccagaagcccttctctccatttctcctcaggttcttgcttgaagtcactggaccaaaatgttagtgctaccaagttgtccttcagtccaagtcacggaggaaaatcatattcttctaaaagatcattgatcattcaagcgtcatacagtgatggtggaaggtcaagcggaagcggtgctggcatctttgttggtggctttgttctgggaggaataattgttggcactcttggatgtgtgtttgcacctcagatcagcaaggcattagctggagctgataagaaggacctgatgagaaaattgcccaagtttatatatgacgaagacaaagcattagagaaacaacgcaagaagcttgctgaaaagattgaccagctgaactcggcgattgatgacatttctacccagttgaggtcagatgacacaccaaatggagctgctgtgaactcggatgatgttgaagctgttgtataagaaacatttctatcttcttagtatcaagtcagctgaggacatcgagtatatgggaatattcctagttcagttttgatgtttttggtattcgctacaatatgatatcccaaaatgaggaaacattatgtgattttatatgctgcttctgttttctattgacatggaactcttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaannnttgggggggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53561" stop="49579"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="53261" g_stop="53112" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="51523" g_stop="51406" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="268" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.931" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="51231" g_stop="51129" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="371" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.788" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="50971" g_stop="50885" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="458" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="50190" g_stop="49879" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="770" r_length="312" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="49583" g_stop="49579" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="775" r_length="5" r_score="0.600"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="777" polyA_stop="809"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U318063" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U318063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="53261" e_stop="53112"/>
          <exon e_start="51523" e_stop="51406"/>
          <exon e_start="51231" e_stop="51129"/>
          <exon e_start="50971" e_stop="50885"/>
          <exon e_start="50190" e_stop="49879"/>
          <exon e_start="49583" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAATATAAACGTACTATAACCCATTAATCACTTCTCTGTTGTAATCTTCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAGGTAATCTCTTCAATTTCCTTTTATTTTGGTTTTCGTTTGTTGATCTGATTGTATTGTTTGTTTGTTTATTTTTGTACTGATTTACATTGCTATCTGAGCTTTTTATTAGTTATTGACGGATTGTTGAATGGCTGTGTATTTGCTTTTGTTTTTCATTTCTCGATCTCGTTGGTCTGGCCTTTATTTTTTTGCTGAGTGAGCTTATGATTTGCGTCTGTCGAGCTCCGTACTATACCCAAATCGGGGTAGAGTGTGTTTATTCTTTGTTGATCTGGTTGTATTATTTAGTTTTGATGCTCTCATTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATTGTTAAAGATCAAATAAGCTTTTGATTTGATTCTGAATAGAATGGAAATTATACTTTATACGAATATAAAATACCAGGTAGCTCATTGAATGCTATAGTTTATTCATAATCTAATAGATATGAGGAATTATAGGAATTTTCTGCCAGGGATTCTCTTCACTATATCGAAAATAGGGTCATGTTAAGGTCAAAATTCACCTGGTATAATTCATGCTTGTGATTAATTATTTTCAGCGAAGCAATTGAAGGCAAATGTTATGATACAAATGAAATGCATGTTTCCAATACTGGAGCTTTTGTACTTTTTTCGTGGAAAGCATGATGGTTATATTTCTCAAAATTATGCCTGAGGGCTTTGGTATAGTGTTAAGAGTGCAACATGTGATGTGTGGGTTAGACACATGCTCGATTTTGAACTTTGTTGCAGATAAAAGCTTGGTACTTTAGTGGAGAATGATAGAGGACTGGCATGTATCCCGAGTTTTGAACATGCGCCATTGGCCTCGGGAATTTCTCAGTATTTTAAAAAAACATATATTACTTATATTTGTGTTTGGGCCTATAAATAACGTTAGTAGAACATTTATTGCACTCATGGTTTGCTGTCTTTCAGAACCTATGCGGTGTAAAACCTTTGACTTTGTTATTGTGCTAGGTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAGGTATTACCTTCTTGTATTCAATATGCAGCTTATGCATGAACTCTCTGCTTTGAGTTGGTTTCTGCCAAACAAAACAGCAGAACCCAGGAAATTTGTTTCTTTCATATATTGGTTATCCACCTAAACCTAATCGAGAAATTGTTGTATCAAATATTTCTCCTTCTGAATTGGCAGTGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAGGTAAATATGGAATTGCATTGGTTGCTGCCTTTATTGTGCTAAACATTAGTGAAAGTCACATCTTAATCTCATTGGTCATTTTTATATTTTATTCTCTTTCTGAGTGCTGCACTTTAGGGGAGGAGCCAGCTGATTGCCGTGTAATTCTTCTTAACAGATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAGGTAAGCTAGTGTTGTGCACATTTTTGATCATATAAGGAGATATCTTTGTGCTGGGAACCATCTCTTCTGATTAAAATATAGTTTCCTTGTGATTTTAGTCTCACTAATTGATGTGATTCTGTTTTCCCGAGTCTGTGTACCTTAATCTTCACTTACACTTGAGCTAAAAAGGTTATAACTCTAGTAAGTTGCCATGTTGTGTTCCTTCAAAGGACTTCTACTTTATCTTCCCTTTGTTGGTGAACAATGAAACTGAAAGAGTACTACTCTTATACCTATAACCTGCAATTGTCTTCTCCCATACTTGAATAAAAGGATTGTAATTGAACAAGTGCTGGTAGTTGTGACCATCATGTAGTTTTGAACTTGTCAACAGATTACGTTTTTGATAATGAATTCTGAAGAAACAGCTGAGCAGCAAAAGCTGCCAATTGTGTGTTGCTCCAGTTCTAAAAGTTTAGCTTCAGTATTCGTGCTACATGAATATTGATGCTTGACAATCCTAGTAGAAAGCTTTCTAGTAACTGTATTGGAGAGGCTACTCTTGATCCCCTAGTGAAAAGATGTTGGATCATCTCTATACATGTGTTACAGCCATTTACTTTCACACAGGATAAACCAATAAACCAACCGTTCGGGGTTATAATCTTGTATTCCCACTTCCTCTGACTCATGCATACTTTTCTGTCTGCAGAAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAACTCATCTTTGTCCTACAATTTTCTTAGTGTTCTTTTTCGAGGGGTAATATATTTTATAACTTGCTATCAAGACCAGCACGAGAAGCCTGTTGATTCATAAATTTGAACATGTGAATCTTTAATATTGGAGTACATTACACATGGTTCCACCACAATATACCCATCGTCGGGAAAAAGTAGTATGTACGTTACCCCTACCAAGTAGCTCAAAATAAAAGTTTACCTTCAGCAGTAGTATTAATATATTTTCACTTTTTTCCTAATGAATAGACGCTGATATTTACTATCGTTCCAGCAAAT</genome_strand>
        <mrna_strand>GGAAAAATATAAACGTACTATAACCCATTAATCACTTCTATGGTGTAATCTTCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG..............................................................................................................................................................................TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG.............................................................................................................................................................ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA.......................................................................................................................................................................................................................................................................................................AAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341150" ref_strand="+" ref_description="SGN-U341150        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttcactgatttaatatatcttagcttctaatactagtctcttgagctccttagactgttggttttggatattgttagagttctacattggttggtgagtgggcagtcctcccctcccgagctagcttttggggttgaatttgcctaaagtgttatatctttacacggtattagtgtcaggtccatgcccctttgagttctcaaccatgcttcagttaggatgggtgtgaggggtgttagaacaccagatgtttgctagtaacatgtgtgtgctagtagtaagccagtcttaacattgtagcatgaacttgtcaaatgtttatctgttaggatccagcgacccgtgttactaaagttatgagctctagcatccgaacaatgagccgtttggtggttacaactaccatatccatttgtacttctataagtttgatagggagatgcctaacttcttatactttcccctagttcacatattcatgcatgaaataggcgttttctgcaattgggttatattctgcttggtgataacgtgattccccctttttttatttgtcacacatttcttattcaattttgtatattttgttcaagtgataattgttgttgtttgtgattattattattattatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="53109" stop="51878"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52809" g_stop="52178" g_length="632"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="632" r_length="632" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U341150" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52809" e_stop="52178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATT</genome_strand>
        <mrna_strand>TTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAAGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U342957" ref_strand="+" ref_description="SGN-U342957        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G33640.1 | Symbol: None | zinc finger (DHHC type) family protein, contains Pfam profile PF01529: DHHC zinc finger domain | chr2:14246339-14249441 FORWARD | Aliases: F4P9.41, F4P9_41 (evalue: 8e-36, score=147) genbank/nr: gi|21805681|gb|AAM76752.1| hypothetical protein [Arabidopsis thaliana](evalue: 8e-34, score=147)">
      <seq>cttttcaatttccccaaaccctagaactggaaaatctaagtaaatgggtcgtcttgtttcttgattttaatatctgggtcgtttttttagttctcgttttgcgtatcagaatcttcaaacaagttcatttgctgcagaaaaaaggagcaatttttaatatttttatcttcaatattagtagttcattcacattggtggaagttggtttgttggcatttgttttttatggtttgagttgaaacgggtcggactcggttctctatggctcggcgtcatgggtggcaactaccggctcactcgtttcaggttgtggctataacagttttctgcctgctatctgttggcttctatgcattttttgctccatttctaggaaaagacatctttgagtacatagcaattggtgtttattccttcctggctctatgtgtgttcatactctatgttagatgcacagcaattgatcctgctgatcctgggattctcattgaagctgacaagtcaacggcctatcaatcacacaacgaaatagagttgcctggtgatatatctgctgcagggggtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="56848" stop="59645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57148" g_stop="57453" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57454" i_stop="58561" i_length="1108">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58562" g_stop="58675" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="420" r_length="114" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58676" i_stop="58775" i_length="100">
            <donor d_prob="0.043" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58776" g_stop="58896" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="541" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58897" i_stop="59321" i_length="425">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59322" g_stop="59345" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="542" r_stop="565" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U342957" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U342957" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="57148" e_stop="57453"/>
          <exon e_start="58562" e_stop="58675"/>
          <exon e_start="58776" e_stop="58896"/>
          <exon e_start="59322" e_stop="59345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTCAATTTCCCCAAACCCTAGAACTGAAAAATCTAAGTAAATGGGTCGTCTTGTTTCTTGATTTTAATATCTGGGTCGTTTTTTTAGTTCTCGTTTTGCGTATCAGAATCTTCAAACAAGTTCATTTGCTGCAGAAAAAAGGAGCAATTTTTAATATTTTTATCTTCAATATTAGTAGTTCATTCACATTGGTGGAAGTTGGTTTGTTGGCATTTGTTTTTTATGGTTTGAGTTGAAACGGGTCGGACTCGGTTCTCTATGGCTCGGCGTCATGGGTGGCAACTACCGGCTCACTCGTTTCAGGTTCTTCATTTTGCTCTTTGTTGTATTTGGATCACTTGTAAAGCTGTAATGTTGGTGGTGTTGGATCTTTTGGGGTCTTTAGAGTGGGTTTATTGGTTTGGTTTGGTGATATTGCTGATTTGTTTCTTTTAGTCAACTGCACTTTGACACTCTTTTACTTTTCCTTTTTAAGTGATGTTTTAGTTAGTTATGCTTTGTAGATTTGTGATTTGCTCAAATTTTAGTTACAGTCGCTTTGCTATTTCTAGTGTTTCACATTCTGAAAAGATGCGATCTTTAGGTTCTGAGTTATGAATTTTACTTGAGTTACAGTAGCTTTATTTGGATTTTTTAAAGTTGGTTTTGGGCCTGTGATGAATTTGAGAAAAGGAGGTCAAATTTTAGTTTGTGGTAGAAATTTGTTTGACGGGTTCCCTTATTATTATTTTCTGCTCTGATAATTTCCAACTTTATGGTGATCACCCTGCATTGAAGGGGAGTCTTGGAGCAATGGTAAAGTTGTATCCAGATGACCTATAGGTCACGGGTGATCTTAACTGATGCTTGCATCATTGTAGGATGCCTACATCACACCCCTTTGCCCTTCCCTGGACCTGCATGAATGCGGGATGCTTAGTGCACCTGCTGCTCTTTTGTATGGCGATTACCTTGCATTGTAACAAGATTAAAATTTCTGACTGACTGAGATCAACCTTCCATCTCTCTTGATGAAATAATGTATATCTTCTTCATCCAGTTCCTTGTTGGACAAACTCTACTATTTAGTCTAAAGAGATTTTAGCTCTGAACCGCGTTCGCTGGATTGTCTAATGCAACTGTTCTGTATGTGTACTTGTAGCTTGGTCCCCGTGATATTCTTTCTTGTGGTCCGTCTGACAAAATAAAATACTTCATTGGTTTTTTGTGTGTAATCAGCATGCATTGCTTACTTCCGTACTCATTTTTCCATTTCTCAAGTCTCGGAATGATAAGTTGAACCTGAAGTTCTTCAGGAAGGCACAGCCCTTACTATTATTATTGATTAGTGACATCATATCGTATCGGCCTTTATGATTAGCTACTATTATCTATTGTTGTTGTGTACTCATTATTCCATGTCGCTGTGCAGGTTGTGGCTATAACAGTTTTCTGCCTGCTATCTGTTGCCTTCTATGCATTTTTTGCTCCATTTCTAGGAAAAGACATCTTTGAGTACATAGCAATTGGTGTTTATTCCTTCCTGGTGAGTGTATTAGGAATGAAGTTGCTTGCAATTTTTGATGCAAACACTCTATTCCTGTTTCACTTGTTACTTCTTGTCATCTTTTGACTCTTGCTTTCAGGCTCTATGTGTGTTCATACTCTATGTTAGATGCACAGCAATTGATCCTGCTGATCCTGGGATTCTCATTGAAGCTGACAAGTCAACGGCCTATCAATCACACAACGAAATAGAGTTGCCTGGTTAGTATTGGATGCAATATGATTCTTTTATTCTTCTTCCTTTGATAAAGGTGAATCTGCAACGGGATCAGAAAAACCTGAAGATACATCTGTTATCTTTTGGTTGGTAATCAAAGACCAAGTATTGTGTCTTTTGGATAAGTTGAAGATACTAGTAAACCCTTTGACCATCTAGACTTTCGGAAGTATAACAAAGCAAAATTATAAGAAATATCAAGTCTTACTAGTAGTCTAGTACTTAAACTGAAAGACTCAAGTTTTACAATAGATGAGAAAAGGGCAAAGGACTATCAAGTGTTAATTATATGCCTTTGTCGCTTTATCTTATTGGGGAGTGAGTGAATGAAAAGATGGAACAATTGGTATCTATTTGGTAATTTGACCACAATTCATCATCTTTTGACATCTTGAACTGCTTGTGATAGGTGATATATCTGCTGCAGGGGGTC</genome_strand>
        <mrna_strand>CTTTTCAATTTCCCCAAACCCTAGAACTGGAAAATCTAAGTAAATGGGTCGTCTTGTTTCTTGATTTTAATATCTGGGTCGTTTTTTTAGTTCTCGTTTTGCGTATCAGAATCTTCAAACAAGTTCATTTGCTGCAGAAAAAAGGAGCAATTTTTAATATTTTTATCTTCAATATTAGTAGTTCATTCACATTGGTGGAAGTTGGTTTGTTGGCATTTGTTTTTTATGGTTTGAGTTGAAACGGGTCGGACTCGGTTCTCTATGGCTCGGCGTCATGGGTGGCAACTACCGGCTCACTCGTTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGCTATAACAGTTTTCTGCCTGCTATCTGTTGGCTTCTATGCATTTTTTGCTCCATTTCTAGGAAAAGACATCTTTGAGTACATAGCAATTGGTGTTTATTCCTTCCTG....................................................................................................GCTCTATGTGTGTTCATACTCTATGTTAGATGCACAGCAATTGATCCTGCTGATCCTGGGATTCTCATTGAAGCTGACAAGTCAACGGCCTATCAATCACACAACGAAATAGAGTTGCCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATATCTGCTGCAGGGGGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U347114" ref_strand="+" ref_description="SGN-U347114        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G33640.1 | Symbol: None | zinc finger (DHHC type) family protein, contains Pfam profile PF01529: DHHC zinc finger domain | chr2:14246339-14249441 FORWARD | Aliases: F4P9.41, F4P9_41 (evalue: 2e-41, score=166) genbank/nr: Zinc(evalue: 3e-45, score=185)">
      <seq>cttgttctcttagggtttaatattctttttttcttctctgtttcaggccttatgtactgctgtttcactccttgcaactgtgcctttaggtgaattgttcttctttcacattattctcattcgtaagggtattacaacatatgagtatgttgttgcaatgagatctcaaagtgagccgcctggaccctctgtagatggaggtgatcagcagagtttgccatcatcgccgaccagctctgcggtgactgccatcagtggaagaagttctgttgggatgagcttgcaacataaaggtgcttggtgtactccttccaagagctcatatccgcccagtcgtgccagcagagaagacattgaaacatgtggccacagcatgagtaacttgagcagtcctcttgcccctaaccgaactccatctccattagcactgcagcatcacccttcaaatagagaccactttaacccaatatatcagtcatctgcaaatcaatctccgtggtcagcaaaagcatgccatgagaacgaatctctgccccctgacaatctctcagaggtatccactaggaagagtaatatgggcactccagagagtacaaggtcatcagttttctgggatcaagaagccgggcgatttgttactgctaatgctaacaggggtgctggttctacttcacaagtttctggaacagagcttacatacactggtcaatctatattttttggagggcctttactgaacgagaacatgaacagaggggcaagaagtagcggtacaccgtttgctggtggtccacagcggagttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="61318" stop="63367"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61618" g_stop="61744" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61745" i_stop="61847" i_length="103">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61848" g_stop="62026" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="306" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="62027" i_stop="62566" i_length="540">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62567" g_stop="63067" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="807" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U347114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>807</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U347114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="61618" e_stop="61744"/>
          <exon e_start="61848" e_stop="62026"/>
          <exon e_start="62567" e_stop="63067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCTCTTAGGGTTTAATATTCTTTTTTTCTTCTCTGTTTCAGGCCTTATGTACTGCTGTTTCACTCCTTGCAACTGTGCCTTTAGGTGAATTGTTCTTCTTTCACATTATTCTCATTCGTAAGGTATGCCCATTCATATCCTCATTCCTTCTCGATTTTTATCTGTGTATATGCGTGTACTTAGATATAAGAGATATTCTGGTACTGTTGTTATGCTGTATTACAGGGTATTACAACATATGAGTATGTTGTTGCAATGAGATCTCAAAGTGAGCCGCCTGGACCCTCTGTAGATGGAGGTGATCAGCAGAGTTTGCCATCATCGCCGACCAGCTCTGCGGTGACTGCCATCAGTGGAAGAAGTTCTGTTGGGATGAGCTTGCAACATAAAGGTGCTTGGTGTACTCCTCCAAGAATCTTCATGGATCATCAGGTTAAACTTCTTATGTGCTTCTAGTTTTGTGAGATTGATTAAGAAAGTTCTCTCTTTTTTTTCGGGTGGAGGATATAGGAAGGGAAGGAGAATGAGTTCTGACTCGAGCAACTAAGCTCATCCCTTGTCCTTGAGAAAAACAGTCAAATTATAGAACGGTACTGTTAATTTCATTCCTCTAACCACCTCGTGCAGGATGAAATTATTCCTCATCTTCAGCCTGGGCGATTGCCATCTACTGTTGATCCTGATGCACTAGACAAGGACAAAAAGGCATCCCACCGTCCAGTCCGAATTAGTGCATGGAAGCTGGCGAAACTAGATTCTAGTGAAGCAATCAAAGCTGGTGCCAAGGCTAGAGCTTCATCATCTGTGCTACGCCCAGTTGGTGCCAAGCACAATCCTTACGACGCTGATCATTTGTCCAGTGGCATGAGTGGTATAAGCAGTCCGGCAAGTACTAATCAAGGATTTTACGACAATAATGGTAGAGCTGGGACATCAAGGTTGTCTCCTTCCAAGAGCTCATATCCGCCCAGTCGTGCCAGCAGAGAAGACATTGAAACATGTGGCCACAGCATGAGTAACTTGAGCAGTCCTCTTGCCCCTAACCGAACTCCATCTCCATTAGCACTGCAGCATCACCCTTCAAATAGAGACCACTTTAACCCAATATATCAGTCATCTGCAAATCAATCTCCGTGGTCAGCAAAAGCATGCCATGAGAACGAATCTCTGCCCCCTGACAATCTCTCAGAGGTATCCACTAGGAAGAGTAATATGGGCACTCCAGAGAGTACAAGGTCATCAGTTTTCTGGGATCAAGAAGCCGGGCGATTTGTTACTGCTAATGCTAACAGGGGTGCTGGTTCTACTTCACAAGTTTCTGGAACAGAGCTTACATACACTGGTCAATCTATATTTTTTGGAGGGCCTTTACTGAACGAGAACATGAACAGAGGGGCAAGAAGTAGCGGTACACCGTTTGCTGGTGGTCCACAGCGGAGTTACTA</genome_strand>
        <mrna_strand>CTTGTTCTCTTAGGGTTTAATATTCTTTTTTTCTTCTCTGTTTCAGGCCTTATGTACTGCTGTTTCACTCCTTGCAACTGTGCCTTTAGGTGAATTGTTCTTCTTTCACATTATTCTCATTCGTAAG.......................................................................................................GGTATTACAACATATGAGTATGTTGTTGCAATGAGATCTCAAAGTGAGCCGCCTGGACCCTCTGTAGATGGAGGTGATCAGCAGAGTTTGCCATCATCGCCGACCAGCTCTGCGGTGACTGCCATCAGTGGAAGAAGTTCTGTTGGGATGAGCTTGCAACATAAAGGTGCTTGGTGTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTCCAAGAGCTCATATCCGCCCAGTCGTGCCAGCAGAGAAGACATTGAAACATGTGGCCACAGCATGAGTAACTTGAGCAGTCCTCTTGCCCCTAACCGAACTCCATCTCCATTAGCACTGCAGCATCACCCTTCAAATAGAGACCACTTTAACCCAATATATCAGTCATCTGCAAATCAATCTCCGTGGTCAGCAAAAGCATGCCATGAGAACGAATCTCTGCCCCCTGACAATCTCTCAGAGGTATCCACTAGGAAGAGTAATATGGGCACTCCAGAGAGTACAAGGTCATCAGTTTTCTGGGATCAAGAAGCCGGGCGATTTGTTACTGCTAATGCTAACAGGGGTGCTGGTTCTACTTCACAAGTTTCTGGAACAGAGCTTACATACACTGGTCAATCTATATTTTTTGGAGGGCCTTTACTGAACGAGAACATGAACAGAGGGGCAAGAAGTAGCGGTACACCGTTTGCTGGTGGTCCACAGCGGAGTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U331227" ref_strand="+" ref_description="SGN-U331227        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein, identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplast precursor (Ppiase) (Rotamase) (SP:Q9LM71)(Arabidopsis thaliana); similar to SP:P25138 FK506-binding protein (Peptidyl-prolyl cis-trans isomerase) (PPiase) (EC 5.2.1.8) (Rotamase) {Neisseria meningitidis}; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type | chr1:7232010-7233555 FORWARD | Aliases: F2D10.32, F2D10_32(evalue: 2e-51, score=198) genbank/nr: Peptidylprolyl(evalue: 5e-52, score=207)">
      <seq>gactcctgtaggtacattttgactgtgtatatcgtaatattactgcggtttcaagtcgagaatctaaactgttggctggtaatcggatcatttcacagtagccttacgagttccaggttggagctcctccagggaaagagcggaaacgtgattttgtggacaatccaaatggtttattttctgctcaagcagcaccaaaacctccaaaggcaatgtatacaataactgaagggatgaaagttggaggaaagaggactgtgatcgttcctccagaagctggatatggttcaaggggaatgaatgaaattccgccaggggctacattcaacctgaatattgaactattggaagtaaagtcatcagaacggaagcaataggtgtacccggactgtgccatatgttttgccttccctcttcttcattgttgtaaaagttgtgttcactcataaacaccaacagctatggaatcaacaacagttcccgctcacccttcacgtgatttgaaccacgacttattggataaaagagacggtgcctcatcaacagtgccatctcctctcatgatttttcttcccttcatgttaactgttcagtctttgttatgtagatgaagtaatttgcttccaattttttccacgcttcttcatgtgtatgtaaacttttacttcttaacttcccatgttactagatacatatatatatattagagagacatcacactatcttgacaatgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="64773" stop="67007"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65073" g_stop="65170" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65171" i_stop="65295" i_length="125">
            <donor d_prob="0.982" d_score="1.00"/>
            <acceptor a_prob="0.811" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65296" g_stop="65448" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="251" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65449" i_stop="65601" i_length="153">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.676" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65602" g_stop="65661" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="311" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65662" i_stop="66280" i_length="619">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66281" g_stop="66707" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="738" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="739" polyA_stop="748"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U331227" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>738</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U331227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65073" e_stop="65170"/>
          <exon e_start="65296" e_stop="65448"/>
          <exon e_start="65602" e_stop="65661"/>
          <exon e_start="66281" e_stop="66707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTCCTGTAGGTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAGGTCTGTTGTGATGACTTCTCATTAGAAATGAGTATGCTATAATTGAATTGACATCTTACGAATAGACATGTATTGCTGCCCTTGGATACATTTATTACTGATACATATGTCTTTCTACTCTTAAGTAGCCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAGGTGTGATGACATTTCATTTGTGCCTAAAATGTCTTTTTCTTTTATAATAGTTTCTATGTGTAAACTCTGATCTCTGAAAAGTTAATTAAAGTGTAACATAAACTGACAGCTAACTCATTACTTGCTGCTTGTCTTATGGTATCTTTTGCTCAGAGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCGGTATGAACCTCACTTTGTTTCATTCTTTGTTATCTTAGTTGACAAAGTTATTATTGTGGTTTGCTTCTTTTCAAAGAAATGTCAACTCGACCAAGGTCGATGAATTCACTGTATCTGTTAAATCACATTCACTTAGAAGTGAGTTTCTCTTGAGAGTAGCTTGGGCTCAAACGACTTTGCTATCCTGGTATCTATTCCAAGGCCTAACAATATTGTTGCGTGCTTGTTTAGTAATTAGTTATTCAAGGGGTAACCAGAATGTCCAATCAAAGTTCTTGACATGACCAAATATAGTATATAGCCGTTAGAAATAACTTATCGATGTACTTATTACCTGTGAGTGGTTGTTTTCAGCATCACTCACCAAATTGCGAAAAGCAAAGCTATCTGCAGATTAAACAACCCTTATCGATGTACTTATTACCTGTGAGTGGTTGTTTTCAGCATCACTCACCAAATTGCGAAAAGCAAAGCTATCTGCAGATTAAACAACCCTTATACTAGGAGTTCTTGGCTGAAGATGCACAGATATCTTATTCGATTTGATTGGTGTGCTTCTATCATCTTTAAGTCTCTTTAGTTTCGAGATCTAATGAATATTTCAACTTACATGGTGCAGCCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGATACATATATATATATTAGAGAGACATCACACTATCTTGACAATGAGAAA</genome_strand>
        <mrna_strand>GACTCCTGTAGGTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAG.............................................................................................................................TAGCCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAG.........................................................................................................................................................AGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGATACATATATATATATTAGAGAGACATCACACTATCTTGACAATGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317376" ref_strand="+" ref_description="SGN-U317376        Tomato 200607 #1 [17 ESTs aligned] arabidopsis/peptide: | Symbol: None | ribophorin I family protein, similar to ribophorin I (Sus scrofa) GI:9857227; contains Pfam profile PF04597: Ribophorin I | chr1:28663126-28666604 REVERSE | Aliases: F15M4.10, F15M4_10(evalue: 0, score=739) genbank/nr: Ribophorin(evalue: 0, score=800)">
      <seq>gtcagtagacagtagcgttcaactccgacgatggtctttttctctgtttgatatttttccgatctgatagccggagtagtataacgcataaagctaaaaggaagaatcagaaaangacgattcgtctttatttgttgttttcgtttttcgttttacttgctcaatggtcgcctgcactttccgatctagtcatctccaaagttgatcgaaagattgacctgacctctcaagtagtgcgtgtgactgcaaatctgaagatagaaaatactggtaatgatccaatttcagaggttctgttaccatttggagatcaccaggcaaaagatttagcatttttagtggcaacaaccagtgaagggaaagggaaaactaaaacttcttccaatagcctacctatcaaacttgttaaccctgaaggcatgccaccatcattgacttggtattctgtctccctaccgaaggagctggcaaaggggcagagcctaaatttggaagtcaggactgcatttacgcatgcactacagccatttcctgagaaaattactcaagctgatatccagctccttgtgtttcaggagagtgcctactatatttctccttatgcagttaatgtccaatctctcagtgtcaaattacccgaaccaaaagtcgaatcatacactaagttagagaacaccaaattttctggttcagaaattaaatatggaccttatgagaatcttcctcctttctcattctcgcatatagcagtacacttcgtgagcaataagccattcgcagttgcccaggagttagtgcgagagattgaagtctctcattggggaaatgttcagatcacagagcattataaccttgtcaatgctggtgccagaagcagtggggagttttcaaggctagagtaccaggcccgaccacatctcagaggtgcatcgtcattcggacatcttgttgccaaattgcctccaagagcccattccatttattacagagatgaaattggcaatatatcaacatccaatttatggggtgattcatcaaagacattgttacaaattgaacctaggtatccgatgtttggtggctggaaaacttcttttaccatcggctatgggctgccccttagggactatttgttccgtgcagaggggaaacgtttcttaaatatatcttttggttgcccaattgaggaggtggttgttgaaaaccttgttgtgaaggttgtactgccagaaggttcaaaggatatttctgtctcggtcccttttcctgtcaaagagtcaagagacacgaaattttccaatttggatatgattggtagaccagtggttgttcttgaaaagaccaatgctgtgcatgagcataaccaatatttccaggtctattacaggttcagcaatctgtcactgcttagagaaccaatgatgttaatttctggatttttcttcttattccttgcatgtatcatatatatgcatgcggacctaacaatctcaaagtcctctccttcttatcttgcaaaactgcagtgggatgaggtgcagactgctcttcagcagatccagagcataatgaaccattgtttgggcattcatgataaacttgaagcatcattacgagatctgtcaaggactggtgatgtgcaagcatgcaaagctgctcgtaaatcagctgataatatgttgaaggagcttttgaaggatttaaagcctttagtctcctttttgcagtcttctccgctgtctgcttcattatattctaaggttgaggatgttgttgcaaaggagaaagagctgcaggagaagctgatagtgaaacacaccacagttacagatagttatgaaaagaagtctggtggtcgagatattgagaaccgtattgcaccaatccagcaaagaattagagctttgagacaggaaattgatgatcttctggaaataattgatgagatataatttcagtgcagacaacattgatccaatataaatggctaaaatattgttgtgaggtgaacaacagaattaggatcaattcgagatattagttgatgcagctgtatgttgttgagaacctgaataactttgtagttgtagaattctaggttcttgccgaatctctttggttgacaatcaaatgagtgctgtagacaactgttttttcatatatattgagttgttaagtttatggttttctaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="66846" stop="72930"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67146" g_stop="67357" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67358" i_stop="68115" i_length="758">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68116" g_stop="68160" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="257" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68161" i_stop="68354" i_length="194">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="68355" g_stop="68989" g_length="635"/>
          <reference_exon_boundary r_type="cDNA" r_start="258" r_stop="892" r_length="635" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.444" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69075" g_stop="69222" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="893" r_stop="1040" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71">
            <donor d_prob="0.843" d_score="1.00"/>
            <acceptor a_prob="0.840" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69294" g_stop="69470" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1041" r_stop="1217" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.690" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69688" g_stop="69756" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1286" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69757" i_stop="69852" i_length="96">
            <donor d_prob="0.706" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69853" g_stop="69942" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1287" r_stop="1376" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="69943" i_stop="71540" i_length="1598">
            <donor d_prob="0.934" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="71541" g_stop="71699" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1377" r_stop="1535" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="71780" g_stop="72004" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1536" r_stop="1760" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="72199" g_stop="72631" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1761" r_stop="2193" r_length="433" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="2194" polyA_stop="2207"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U317376" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>2193</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317376" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67146" e_stop="67357"/>
          <exon e_start="68116" e_stop="68160"/>
          <exon e_start="68355" e_stop="68989"/>
          <exon e_start="69075" e_stop="69222"/>
          <exon e_start="69294" e_stop="69470"/>
          <exon e_start="69688" e_stop="69756"/>
          <exon e_start="69853" e_stop="69942"/>
          <exon e_start="71541" e_stop="71699"/>
          <exon e_start="71780" e_stop="72004"/>
          <exon e_start="72199" e_stop="72631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGTAGACAGTAGCGTTCAACTCCGACGATGGTCTTTTTCTCTGTTTGATATTTTTCCGATCTGATAGCCGGAGTAGTATAACGCATAAAGCTAAAAGGAAGAATCAGAAAATGACGATTCGTCTTTATTTGTTGTTTTCGTTTTTCGTTTTACTTGCTCAATGGTCGCCTGCACTTTCCGATCTAGTCATCTCCAAAGTTGATCGAAAGGTACGTTACGTCTGTGATTGGTGTTCAATTTGGTTTTGATTTGTTAATGTATGAATGTGCTATTCTTTTTCCCTATGATATTGAGGGTAAGTGGATTATATGATTAAGATCTAGTCGTTAATTGAGTAACCTTTTGGGAGAATTTGATAAATATTTTGGTTTGCAAACCTCCTTATACCTGCTGGTGGTGGAAGATGATAGGTACACGTACCAATTAGTTGAAGTAACCAAAAAAAAGTAGCAAATGTTGTAAGAGGAATTATATAGTCAAGTAATTTCAACAAAAGATGCTATTTTTTTATATTCCTTGCATTGGCATCAAAGGGAGCTGGTAGTTCTTAAAAAAATAGAGCTTTTTTAGGATTGACGAACTTTAAGTGATTAATTGTTCTTGCATAATAGTATAACTATAGTGCTCTGACTGTGATTAATTTCTGCCTATCCCCTGTTTCTTTTTCTTTTCTTTGTGTTTATTCTCAAGCATGATCAAGTTGACTGATGCATAGAATGTGAGGTCATAGTATAGTAATGATAGTCTTCACCCTTTCTTTTTGTAATTATCTTCTAAAAATTTAATGGTTCACTGCACGGTTGATACTATCTTTGATTGTCGTGTTGTCACTTGGATTATCAGTCATTCCACATTTTGGTGTAGTTTGAAAGAGAAAAACTGAGCTGTTAATTAGACTATTGGATCTAAATTGCTATTATGCATTCAATCATGCTTACTTCTGGCTGTCATGTATCTTGTATTGCAGATTGACCTGACCTCTCAAGTAGTGCGTGTGACTGCAAATCTGAAGGTTTGTGGTAATTGCTTGCGTTTTTTGAGATTCTGGACAAGTTTGTTGAATATTCCAAACCGCAGATAACGGATTTAATAGTCTATACTTTAATCGAGAAGTAGTTAATTGTATTTGAGAATTTGCAAAATTTAATGACTTAGTGTTACTATCTAACTAGTGATGCTTGTATTATTTCTTATTTGTATGTTCAGATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGTGGCAACAACCAGTGAAGGGAAAGGGAAAACTAAAACTTCTTCCAATAGCCTACCTATCAAACTTGTTAACCCTGAAGGCATGCCACCATCATTGACTTGGTATTCTGTCTCCCTACCGAAGGAGCTGGCAAAGGGGCAGAGCCTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAGGTACTATAATATTTTCTGATTAAGTTCAAGAATTATTAAGCTGGTTATATTTGACCAGGAAAGTCTCCCACTTTTAACATCACAGGCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAGGTTAGAAGACATACTTTCTGAAGCTTTCATGTAGCTTGTGTCTAGCTTAACACCATGCTCTCTGTTCGCAGACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAGGTAATACTTCTATAAGAACTGAATAGGCTTTAATTCCATATTTATAATGATGTAATTTAGTGTTATCACAAGAATCTAAAATATAATTTATTTAGAAGATGATGATATATTTTGTGCAAAAGAGGGCTTATGGTATAGTGTGATTGTATGGGCCTTTAATTTTTTTTTTCTTGAAAAATTCTTCAAGATAATGATGGAATTGTTTTCTGGAGAACAGGTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGACGTATGAGTAAATCTTAGTTTTTCTCCTCTGAAGTTCCTCTTGTATGATAACCTTTATTCCTCTAACATTCTATTACTTCTTATGTTTTATTTGCAGACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAGGTTTATAAGTTTATCTACAATGCTGTTGAAAGAACTGTATGTGGGAAGCATTGCATATGATCCTAGCTTAGCCAAGTCCATTTTGGGCATGAGTTAACCGGGCGTAGGTAGAATAATTCAGTTTAGACAGAGCCTCAGATATAAGGATTAGACTTGGTTCAATCTGAAAGGTTGAATGGTGGAATTTGAGCCGAACCTGAGCTAGATCATCCAGAGAAACCTTTTGGATTTAAGATTCAACTTTTTAGTTGATGAGAGAAACGCATCCCCCCCCCCCCCCCCCCCAAGAAAAGGGAAGAAGAGAGACTAGAAAGAAAATTACAGTAGTGGTCCTACTGGCTATAAGATCTCCGGGCGAAATTTTGGCTGTTGGTCTATTATACAAGAACAAACTAATTACAATGGGGTACAGACATGGGTGGAATATCTTCTATGAAATGGAGATTTTACATATCAGACTGTAGGCTTTAAATGGTGCGTCATATCATATCTAGTCAAAGCAAGCATTTCAGCATATGTTTGCTTGCATCTGGCTTATTCACATGCTACCCTGTGCATATTTGTACTGGATCAAGTTATTTAGGACAAATATTATCATCCTCCAGAAGAAAGGATGATGGAATATTTAAATAAGAACCACTTGTATCCGTGCTTTTGTGACCAAGCAAAATTGTAATAATCGTGTTGAAACTTATCTCATTGAACTCAGAGCATAAGATAAGATCCCATCACATCATATCCCTAATATCGACTATGATATGTAACCTATCAATTTGATAGGCATATACTCACAATGATGTAACATGTTGGAGAGTATCAGTATAAATTTAAAGTTATTAATTAAGCCTTACATCTTTCACTCTGATTTAAATTTGGGGTTATTGGTTATTAGAAGCACAATTGTGTTGATTAATATTCCTTACTCTTTCTATTTTGGTCAATAAGAAAGCCCAGTATGGCTTACCTGAGCCCAGCTCATGACTTCAAGATCTCTTCTTGGTTATTCTACCTTAATGACTTAAAGTTCAGGTGTCTGGTTGGGGGGTTTAATGCCTGAAAGAAGTCTTCAGAAATCAAATAAGAAGAATGCTTGTCTCCTTTAAAGGGGATAAGGCTTGTTGAATCATGAATGTGTTTGGGATCTTGTCAGGGATCCATACTTCTTTCATTTCCTTTCCTTTTTGTGGTTTTCTTTTGGGATTGGGAATAATTAATGCTCGTTTCACCATTCTGAGGTTTCATTGACACCCATTATATAGAACTAGAGTTCAATTGCCATGCAGAAAGTTTCTGTCCTGATCTGGGAAAACAAATCTTTTCCTTCTTGCTATTTTCTTTTCAGCGACTGGATGGGCAATACCACACATTACAGCAATTCTTCTCCTTTTTCTATCTCACTTTTGGCTTTCTTTTTATGTAAAAAATATTTCTGGTTCACTTATGATGGCCTCTCTATCTGGGAATTAGAATTCTTAAAAATCTGATCATGTGCTATAGCTTGTGAGTAGAACTTTCCCTGCATGGCCTGGACCACATTAGTTTCCCTGTTTTTGGCTTATGTTTTGTGTAGGTACTGACTGACGAAGCTTTCGTGACAGGTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAGGTATGCTAGTAGTAGTATAACTACTTATTTTGTGTCAATATTACAGAAAATAATTTTAATTTTTCCTTTGGTGTTTTCAGGTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAGGTTTGTCTATGTATTCTTTTCTTGCGGAAAGAATTTACCCATCATCTTGACAAAGATGGCCTACATTGAAGCACTCATAGATAGTCGACCCCATCTTATCTAATGAACTCCTTGTCATTGCAAACTTGGAATGACAACTTTATGGTCCTTAATCCATTGGTGCTAAAGCTATGTGGCTGTTTTATTTTATGAAGGTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAC</genome_strand>
        <mrna_strand>GTCAGTAGACAGTAGCGTTCAACTCCGACGATGGTCTTTTTCTCTGTTTGATATTTTTCCGATCTGATAGCCGGAGTAGTATAACGCATAAAGCTAAAAGGAAGAATCAGAAAANGACGATTCGTCTTTATTTGTTGTTTTCGTTTTTCGTTTTACTTGCTCAATGGTCGCCTGCACTTTCCGATCTAGTCATCTCCAAAGTTGATCGAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGACCTGACCTCTCAAGTAGTGCGTGTGACTGCAAATCTGAAG..................................................................................................................................................................................................ATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGTGGCAACAACCAGTGAAGGGAAAGGGAAAACTAAAACTTCTTCCAATAGCCTACCTATCAAACTTGTTAACCCTGAAGGCATGCCACCATCATTGACTTGGTATTCTGTCTCCCTACCGAAGGAGCTGGCAAAGGGGCAGAGCCTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG.....................................................................................GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG.......................................................................ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAG.........................................................................................................................................................................................................................GTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGAC................................................................................................ACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAG................................................................................GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG..................................................................................................................................................................................................GTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317136" ref_strand="+" ref_description="SGN-U317136        Tomato 200607 #1 [23 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28666817-28668683 FORWARD | Aliases: None(evalue: 1e-55, score=213) genbank/nr: gi|30699168|ref|NP_565130.3| auxin-regulated protein [Arabidopsis thaliana] gi|11762283|gb|AAG40412.1| At1g20810 [Arabidopsis thaliana] gi|15724260|gb|AAL06523.1| At1g20810/F2D10_27 [Arabidopsis thaliana] gi|18252259|gb|AAL62010.1| At1g20810/F2D10_27 [Arabidopsis thaliana](evalue: 1e-53, score=213)">
      <seq>tttgggtgtttatagagtctggttatccattcccagctgaagcaactcttccattcatatatatctagggtttaaccagttgggggttgggggattcttctacagtgaagaacacctgcatttaacagaaaatggagagctcacttcgttatgctggagattccaagagtctggtgattcatgccaaggagaaatttcctcttaacactttcacccatttgcagggtcatgcagaactagacaccaaaattggagcaccaacttatctctgtgctatgataaggcaatactttcctgatcaatatgctagtcttgctgtgggagtgcaatattataggcggcaaaagctctggtatactgttcgtggtaaaaaagaatttccagtgacggcaaataattcggttaactttcatattaagggcaagtacgatgtggacgaaaaacttttggagaaaaagtcgagagttgctgctgaatttacttgggatatcatggatgtgaaaaaagagcaagatgtgaggctcaaagttggatacgaagtcattgaaaaggtcccttactttcagtttagtgaaaacaactggactctcactgtcaacaatattgggaaatggaaagtaagatatgatttgtgatattactgatggacgcataaattgttcagttagagtggttataattgctagaaagaagaaaaccatcatccttcatctgtgtttctattacgtattttgacattctatcattgcaaaaaggcacattaccttgtgtaagatctggttttgagtattgttaacagagatagtgccattgcaatacaaaattgaaactcatgaaaattacctttcatttgtgtaagaaattttgctccccaaaaaaaaaaaaaaaaaaaaaaaaatctactgtgaagttaaagctaatacatatgattcgggagctgtgtttctgcaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="72913" stop="78664"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73213" g_stop="73436" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74789" g_stop="74863" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="299" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595">
            <donor d_prob="0.975" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="76459" g_stop="76611" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="452" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.720" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="77242" g_stop="77340" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="551" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625">
            <donor d_prob="0.985" d_score="0.98"/>
            <acceptor a_prob="0.941" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="77966" g_stop="78289" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="875" r_length="324" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="950" polyA_stop="962"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U317136" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>875</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317136" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73213" e_stop="73436"/>
          <exon e_start="74789" e_stop="74863"/>
          <exon e_start="76459" e_stop="76611"/>
          <exon e_start="77242" e_stop="77340"/>
          <exon e_start="77966" e_stop="78289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAGGTATTAACCATTTCCTAGTTTCTGTCCATGAAATTTTGTGACAACACTGAGTTTTAAGCATTTACCCATGTCAAAAGATTCGGTTTTTAGCATTAGTAAGTTGTTCTTTCCATGAAATTTTGTGACAAGACTTGAGTTTTAAGAATTTACCCATGTCAAAAGACTCAGTTTGAGCATTATTAAGTTTACTCTTTTCTATAAATTTTACGAGGAGACTTGAGTTTTAAGAATTTGCCCATGTCAAAAGACTGAATTTTGAGCATTATTAAGTTACACTTTTCTGTAAATTTTGCGAGGAGACTTGAGTTTTAAGCATTTCCCATGTCAAAATATTCAGTTTTGAGCATTAATAAGTTGCTCTTTCCATGAAATTTTGTGACAAGACTTGAGCTGTAAGAATTTGCCCATGTCAAAAGATTCAGTTTTGAGCATTAATAAGTTGCCCTTTCCTTGAAATTTTGTGACAAGACTTGAGCTTTATGCATTTATCCATGCCAAGAGACTCGGTTTTCAGCATTCGTTGTTCTTCTTGAATTTTTTGCTTGATATACTCTTGTTTCCTCTCCACAACCTCAATTATTACCCCTCACCCTGAAACTTCTTTTGTAAATGTCATGTGGGGTTTTTGGGTATGTTTTCTGCTGGTTCATGATGTCTAGATGATTTAGTTTAACTGTTTACTCATGTTAAAAGACTAGTGATTTGAGCATCACTGAGTTATTCTTCTTGAAGTTTTTGCACGATAGAGACTTGTTTCTTCTGCAGAAATCCAATTTTATTCCTTCATACTAATTACTTATATTAAAAATGCCAAGGAGGTTTTCATGCTAGTCAAAGATGTCTCCTCTATGCCTGGTTGATTTAGTGTAAGTGCTTGAAACAACATCCTCCCCAGACCCCAACTGTGGGATTTTACATGGTATGTTGTTTCTTGAAACAGCTTACAATGAGGGGTCGGGGTTCTGCATTTGAAGTCAATTCAGCTTATCTTCCCTTCTTTTATACCAAGATTGCATACTCTCATACAAGTATATATTTGGTTTGCTCATCATTATCTACAAACATGGGACATTATTGGATATATTGACAATGAATAAAGGGCTAAAATAGAGTAGAAAGCATATAGTTGAAACCAACTAGGTTGATAATGAAAATGCCTACGTCCGTTTCTTTTAAGGAAAATGGTTGATGATTATAGACATTTATCACTTCATATAAGGTTTAATGATTTTGCTGTAATTCTTGTACATATATAGATATGCGTATTTCTCCCAGGATAGGTATGCTGAGGTTATTATAAACCTTTTGAGCTGCTTAATGGCCTTTATCATGTGGGTTCTATTCATTGGCAGGGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGATGTATGTTCCTACCCTTTCTACAACAATTTGTTGCTTGTATATGTATGTAAATTTTCACCTTGAGCACTCCAAGAAGTTTAACTGAGCATGTGTAGTCTGATCTAACAAATAATTAGGGTCAATCTTTTAGCACTCTATTTATTCGTGTGCCTCAGTAACATATCGTGTCAAGCGCCCAGAGCTGATTTGATATCCACTATCTTACCTGCTTGAGACTAAGACTGGTCAACGGAACGGGACGTACCGGTACCGTTCCGGTTCGTCCCGTTTCGGTTGACTACGGGACGGGATAGTGTGAACCGGTACACGGAACGGAACGGAACGGAACCGTGATTTCGTACCGGTGTACCAATACCGGTTCATCCCGGTTCATTCCGGTTCCGGTCCGGTCCGGTTTATTTAATATATATTAATTTTTTTATATTCTATATTTTATATAATTTATATTTAATTTAATTTTTTTAAAATTACAAATTTTATTTATTTAATATTTACAAGATACAAGTTATAAATATAACTTATAAAATAAATATTAATGAATATAAGGTATAACTTATAAAGTATAAACTTCAAAAGATTTAAATTTTGAAAACTTTATTAGACTTTACTTGCAAACTTAACAACAACAAAAAAATTAATAAAATATCTTTAAAATAAACTTAAGTAAAAATTATAGTATAAATTTAAAAACTATTAATTTATTCTTAAAAAAAAATTATATTTTCGTAGTTCCAAAAAATATCGTCCCGTTAATTCCGTCTCGTTCCATCCCGGTCCGTTCCGGTTGATTCCGGTTCCATCCCGGTATATAGTGGAACGGGACGGAACCGATGAATCATCCCGGTAATTCCGGTCCGGTTCATCCCGGTACCGGTCAACATACCGGTCAACGGGTTCCGGTCCGATCCGGTACCGGTTCATTCCGGTCCGGTGAACCGGTTCCGGTCCGTTGACCAGTCTTTCGTGAGACCAGAAAAGGCGTTTTGCATAAACCAGTGTTCATCTCATACACTAAAATGAAACATTGTTTAATGACATCATCACACGGTTCTTATTTTTTCCCTTGAAATACTGGTGTAAATGCAGTATAAACCCGTGATTCTTTTTAGTGAGCTGACAAGTTGGGTTCTGGCACAAGCCGAAAAATGGAAATTTCATTGTGGGCAACTCAATCAAATTAAACGCCATTCCCATTACCCCCAAGAACAAGGGATAAATTAAAGAACAGAAGGCAGAAAATAAAAAAACATCTCCTTTCAAATTGAATGTTATGATTTTCCCTTTTAAGAGTCAACCTTCACATGATATTCTCCGATGTTTTAAATAATTCTAAAGCTATAACTTTTCTTCCTTCTTATTTTTGTTCTTTCTAAATATGTAAAATTTATTGTCAATAGCATAAATGAATTTTTTTTGCTTTGTCTCAAAGATTAAGCAATGCCTGTGTAAGTAGCCTGCTAAAAAAGAAATCTTTTCATTTTACTTCTGAATTGGCCAACTCTTAATAAGCTAATTGAGACATAATAGGTTGAATTGGTGTACATGAAATTTATGTTATGGTAGCTCAGGAAATTGACATGCTTTTGTACTTGTAGCAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAGGTTGGTAATTATTCAAAATGTGTAAAGTCTATACATGAGTGAAACCGTTGGTGTTTAAAAAATAATGATGTCGATTCTTTTCGAGCAACGATTGGGATATATATCTAGTAGTCTTACTCTAGGCTTGCCCAAGTAACAAATTAAAGGAATTTGGTTTTGAGTTGCATCCATGAATGAGTAATCACCCTTGTCAAAAAAAAAAAAAGGTTTGAAAGAGTAATCCCACTGTCATTTCGGGTATGTTCATATTTATGCAGTCTTATGTATTTCAATCTGAAGGTATCAGTTATATTCTTATGTTGGCTTGAAGATCAAAATTCTAATCAAAATTTTCAGTTATCTGCATCTAGGAGTGTTATAACTTGTATATCTATTCCTTTGACCAAGCATGTAATCATATTAAATTGATGGGTTTTTTTTCAATGATTTATCTTGTCCAGTATTAGAGTGAAATTGCTATACAGAGTAAAATAGGTATAGAGGATCTGTATAGCTAAGCTAACTAAGTAAGAATTGAGGCATAGTTAATCATCCTGATATATCTTGTAATTTGACATGTTGCTTAAATATTTGGTTTAAAGTAACAGTCTTACAGAAACCTTCGTACTTTGCTTATTTCAAAACTTCCAGAAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAGGTAAATCATTTTGCTAATCTTCAAGTAGTGTACTCCGTCTCCCATCTTCCCACCAATCAATTAGTGTTGAAACAAATGTAGAGATATGGTTTGTGAAAATGGTCACTTGAGCTTCTCTAGCTCTCATCATAAATGCATGGCATTGTCTTGTACCTTTGAATCTCATAAATGAATATAGTATATACTATAGTGTTTTGATACTACATTTCTTGTCCAAAGAGATAAGATATAGTTCCGATGCTAGAAAGTAGAGACTGCACTTTATCTGTGTTGCATGCACAAGTGTTGCAGGTTCCTTACTTTCATGAAAAATCTAAGCTTTATTACCCAGCAAACAACAAAATTAAGTTGCTTAAATTGTCAAACATTCTCCTGCTGATAATTGGTGTAAGCTTTAACGAGGTAAGGACCTTCCTACTATGTTTTTGTACATGTCATTTCCATTATTGGGTTATGGTCTATACGTCGTCGTTTTTCATGTATTTCCTCTTTCTTACTATTTTGTTGGTCTGATTCATCTGACAGTTAGTTCCACTTTTGAGAGTCCATTGCATGTCTCTTGTATGGATCTCACCAACATGTTACCCTGCAGTTTGAAGTTCTGTTTAATTCTCTCTTTTTCCAGGTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAT</genome_strand>
        <mrna_strand>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGAGCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323433" ref_strand="+" ref_description="SGN-U323433        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT4G35300.1 | Symbol: None | transporter-related, low similarity to hexose transporter (Solanum tuberosum) GI:8347246; contains Pfam profile PF00083: major facilitator superfamily protein | chr4:16796261-16799558 REVERSE | Aliases: F23E12.140, F23E12_140 (evalue: 0, score=755) genbank/nr: gi|63334145|gb|AAY40466.1| putative hexose transporter [Vitis vinifera] (evalue: 0, score=814)">
      <seq>gaatctcctcgatggctagtcagtaaaggaagaatggtcgaggcaaaacaagttttgcagaaattgcgtggcatagaggatgtttcaggggagatggcattgcttgttgagggtttggctgttggcattgaaccatcaatagaagagtatatcattggtccagctgatgagcttactgaggatcaggacctggctactgacaaagatcatatcaagttgtacggcccagaggaaggcctctcgtgggtggccaagccagttactggacagagtagtctagctcttgtgtccaggcaagggagcatggtgcagcagagtgtgcctcttatggatcctcttgtgactctatttggtagtgtccatgagaagctccctgatacaggaagtatgaggagcatgctattccccaatttcggaagcatgatcagcaccatggatcctcatgtcaaagatgatcactgggatgaggagagtctgcagagagaaggtgatgattatccttcggatggcggtgcagattctgatgacaatctacaaagtccattgatatcacgtcaaacaaccgctgtggaaaccgtagtccctcatccccatggcagcactatgagcgtgaggcggcatagcagcctaatgcaaggcaatgctggagagggtgtaggcagcatgggcattggtggtggttggcagttggcatggaaatggtctgaaagggaaggtgaagatggaattaaagaaggaggcttcaaaaggatatatttgcatcaggaggcgggccctagctctcgacgtgggtctctcgtttcagttcctggtggcgatattcatgaagatggtgaattcatacaagctgcggctttggtaagtcagcctgcactttactctaaggaacttatggatcagcatcctgtgggaccagcaatggtccatccatctgaaactgcttcaaaaggtccgagttgggctgctcttcttgaaccaggagtcaagcgagcgctcatagttggaattggaattcaaatattgcaacagttctctggtataaatggagtcatgtactacactcctcaaatccttgagcaggcaggtgtaggagttcttctttctaactttggcatcgcatcagactcagcatccttcctcatcagtgcgttaacaaacttcctgatgctcccttctgtagcaattgcaatgcggttcatggatgtggctggcagaaggtcgctgctgctgtacactattcctgttctcatactatcactcatctgtcttgtcattggtaacactgtcaacctggggagtgtagctcatgcagtcgtttctactatttgcgtgattctctacttttgtttctttgtgacgggctatggacccatcccaaatatcctctgctcagaaatttttccaactagggttcgtggtttgtgcatcgccatctgtgctctcgtcttctggatatgtgatgtcattgtgacttacacactgcctgtgatgctcaactcgattggtttatctggcgtgtttggtatttatgccattgtctgtgtcatttcttggattttcgtcttcttaagggttcccgaaaccaaaggcatgcccttagaagtcattacagagttctttgctgttggtgcaagacaagctgctgctatcgcaaagcatgagtagttagttttaaggtatcttctgtccgatttactacaagtatgtagtaaaatttgtagaaaataaaaaaatgttatcctctctaggtgtcctccattttacatccatctggtactggcatttctcaatagttattactgctatatttgtccaccattttgagatgtccaaattagtatctttctttttaaaaaaaaaaaaaggaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="87959" stop="83531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87659" g_stop="87572" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87571" i_stop="86868" i_length="704">
            <donor d_prob="0.944" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86867" g_stop="85927" g_length="941"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="1029" r_length="941" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="85926" i_stop="85337" i_length="590">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.796" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="85336" g_stop="85149" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="1030" r_stop="1217" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="85148" i_stop="84465" i_length="684">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="84464" g_stop="83845" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="1218" r_stop="1837" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1852" polyA_stop="1865"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U323433" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1837</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U323433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="87659" e_stop="87572"/>
          <exon e_start="86867" e_stop="85927"/>
          <exon e_start="85336" e_stop="85149"/>
          <exon e_start="84464" e_stop="83845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCTCCTCGATGGCTAGTCAGTAAAGGAAGAATGGTCGAGGCAAAACAAGTTTTGCAGAAATTGCGTGGCATAGAGGATGTTTCAGGTATGCTATCTGCTATTCTTTGGGAACATTTCCCTTTTGTGTCAGCTGGCTGTTTAAATATTCAGAACATGTTGACTGTGGATTGTGCTTTCTCAGGGATTTTATTAGATCGTTGAAAGTAGTGGTATGAATATTTAGTATAACTCTTTTTGTAACGTTCATACTGATTTCACAATCTGCTATGGAGTAGCTCCCTAAATAGGAATGCATCTAAACTTGAGTTTCCTCTATTATTTATCGTTCTCCATTTTTTACCCCTCTTAACTATCCACTATTCAGTCAGTGCCTATCTTTGTCAAATTCTTTTCAAAGTTTATTTTTTTAATGAAAAATGACAGATTTGCTTATTGATTTGTAATCACTCATTTTCTATATTTTCTTTCTCCCAGATTCTACTATCTTTCATGAATTATTTTAGTTACTTCCATATAAGTGAGAAATCAGGATCTGGAGAACACTCATTATATCATACCATATCAAAACACAACGCCATCCAATATTCCCTGATTCCTTCCTTTTAGGTTTTATTTCCTTGGAGGCAATAAGGCTCACCATCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTGGTTCTCTAGTCAGTAGAACACTCTTCTTTTAAGTTCTTTCATATTCATCTCGTGATTCCTATTTGTTAAAGACACTGATTTCATCATATTGATTTTGTTAACTATTCTGTGCATAGGGGAGATGGCATTGCTTGTTGAGGGTTTGGCTGTTGGCATTGAACCATCAATAGAAGAGTATATCATTGGTCCAGCTGATGAGCTTACTGAGGATCAGGACCTGGCTACTGACAAAGATCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCAGTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTTGGAATTGGAATTCAAATATTGCAACAGGTAAAGTATTATTCTTTCGTCATTCTGTTGCTTCTTTTGGTTGTTTTACTAGGATTAAATTTGATAGCTACAAAATTTCAGCATGCTGTGTTTGAATGTATACGAAATGGACTTAGTTTTATATATTATATCCTTGAGTTGAGAATTCTGTTTCTTCTTTAAATATAAGTATCTTGGGGTTGTGATTGTGATTAGCATAGGATCATGTAAGGATTACATGACCAAACTAGACAGTACATCCTCATATCATTTATCTGGAAGCAGATACAAAGTTTTAAGAAAATATTTTGGTGTGTTTTATCTGAAGCATTATTATAATCGCAACAAACATTTCTACAGTTTTTTTTTTTTGTGTTTAGTTCAACTTTGTTGATAGGGTGGGGATGAGTTATTTTCTCCATTAGTGTATTTTCCTTTGTTATCTTTACGGAGTCTCTTCTTCTGTATTTACTTCATTATGTAGTTTTTATACTGAGAACTACCTTGTAATTAATAATCCCAAATTATTGAGGCAAAACTGTGCGCTCACTGTCATTAGACAACAAGGCTTGGAATGTTGCCATCTTACGACTGTAATATTTTATCTGCAGTTCTCTGGTATAAATGGAGTCATGTACTACACTCCTCAAATCCTTGAGCAGGCAGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAGGTAATGTTCTCTTGATTCCTTTCTTCTGCATTAGATTAAGGATGGTTTTGGTTATGTCCTCAAGATTTATTGCTGGAAAATCCATGAAATATGTGCAGTGAGTCTCGATTTGCATGTAGGACCATATCTTTTCCTTATATTGGCTGTAGTAGTCTCCTCGGAATTTTTCCAAGCCATATATATATATATATATCCAAGGTTGGAAAATCGATGCCCTATCTTCCATGAGACTAAATTTCAAATTGGTTAGTTTTTGAGTTTGTGTTTCATGACAGGTAGTATTCCCTCTATCCAATTTACACCACAAAGATGACATCATTCTGTAAATAATTAGTTACTCAAAGTTTATACATCTCAATAATTCAAATTCAATAAACTAATCCAGTTTAGATGTAGATGAGATGTTCTCTGTCTAACCAACTTTTCGACTAGTATTACTTAATATATTTTCTGTTTACTGCTTGACAATACACAAGCCATATATCATCTTAAACTTGTTTGAAAATGTTTTTCCTTGAGTCGAGGGTCTATCGAAACAACCTCTCTACCTTCCTATCCTCCCTAGACGCCACTAGTGGTGTGTATGTTGTTGTTGATTGATTATAATAAAAAAAATACAAACTCTTCATCGTTGTATTGTTTATTTTATGCTGTAGAATGTGTCATTAAAATGATAACTTGCAGGTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTTTTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTAGGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTCAATAGTTATTACTGCTATATTTGTCCACCATTTTGAGATGTCCAAATTA</genome_strand>
        <mrna_strand>GAATCTCCTCGATGGCTAGTCAGTAAAGGAAGAATGGTCGAGGCAAAACAAGTTTTGCAGAAATTGCGTGGCATAGAGGATGTTTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGATGGCATTGCTTGTTGAGGGTTTGGCTGTTGGCATTGAACCATCAATAGAAGAGTATATCATTGGTCCAGCTGATGAGCTTACTGAGGATCAGGACCTGGCTACTGACAAAGATCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCACTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTTGGAATTGGAATTCAAATATTGCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCTGGTATAAATGGAGTCATGTACTACACTCCTCAAATCCTTGAGCAGGCAGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTTTTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTAGGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTCAATAGTTATTACTGCTATATTTGTCCACCATTTTGAGATGTCCAAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333349" ref_strand="+" ref_description="SGN-U333349        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | cysteine endopeptidase, papain-type (XCP1), identical to papain-type cysteine endopeptidase XCP1 GI:6708181 from (Arabidopsis thaliana) | chr4:16810487-16812009 FORWARD | Aliases: None(evalue: 2e-62, score=235) genbank/nr: gi|37780039|gb|AAP32192.1| cysteine protease 14 [Trifolium repens](evalue: 2e-68, score=261)">
      <seq>aaaaacgaacgaacatggctcttttctcttttacaaaattttcactacttgttttattttcaatttctctcctggcctgcacctcattggctcgcgatcattccatcgttggatactcctctgatgacttgacttgcatcgataagctcataaatctctttgataaatggatggataaacatggaaagatttataagagcattgaagagaaattacataggtttgagattttcaaggaaaatttgaagcatattgatgaaaggaataaaatggttaccaactattggcttggtctaaatgagttctctgatttgagccatgatgagtttaaggaaatgtatttaggactgaaagttgatcaagagttgcttaataaaagagagaaattatctcaagaagaatttgcgtatagagattttgttgatttgcctaagtctgtggattggaggaaaaaaggtgctgttacccctgtgaagaaccagggtcaatgtgggagttgttgggcattttcaacggtggctgcagtagagggaattaaccaaataaaaacagggaatttgacatccttgtctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="93576" stop="94816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="93876" g_stop="94367" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="492" r_length="492" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94368" i_stop="94433" i_length="66">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94434" g_stop="94516" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="493" r_stop="575" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U333349" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U333349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="93876" e_stop="94367"/>
          <exon e_start="94434" e_stop="94516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTGGTAAGTTGCGTCTTTTGGTTTCACAATAATTATGTTCAGATAATTAGTGTGACTGTATGTATGTAGGGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</genome_strand>
        <mrna_strand>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTG..................................................................GGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326827" ref_strand="+" ref_description="SGN-U326827        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:28687041-28688644 REVERSE | Aliases: F15M4.6(evalue: 7e-33, score=137) genbank/nr: gi|15223046|ref|NP_177770.1| expressed protein [Arabidopsis thaliana] gi|25406447|pir||B96792 hypothetical protein F14G6.4 [imported] - Arabidopsis thaliana gi|6554475|gb|AAF16657.1| hypothetical protein; 22462-23090 [Arabidopsis thaliana] gi|12323972|gb|AAG51943.1| hypothetical protein; 19301-18673 [Arabidopsis thaliana] gi|22135998|gb|AAM91581.1| unknown protein [Arabidopsis thaliana] gi|23198326|gb|AAN15690.1| unknown protein [Arabidopsis thaliana](evalue: 5e-31, score=137)">
      <seq>gaagtagagcggcgttcaattttggctacgaatctcttcaaaggagagggcttcagtgagggagcttacttgcttggtacagctgtaaaacatgaatccaaatgaatctgcaaagtctcatgccaaacccgatatcattctgactgggactgcaaaaacatgtccaattggaccgccacttggtttggttgacataggcagtagtgataatgcatatatttttcgtgttgcgcttcctggtgtaaggcataaatgtaatatccaatttgacatacagagagaagggagagtccggatagaaggtgtgattacagagagtgaggctttgaaaaactcactcaagggttatgagatgaaagttcagcagcttccttcccctgggccttttaccatatcgttcaatttgccaggacctgttgatcccagattatgttccccgcagtttagaaccgatggcattttggaagtcattgtgatgaaatatcagatacctttggtttcagcagaaggtttgcctgagaattggtacaatggctctttcccagctccttgaattctatttggtccacaatccctatgacacatgagaatcctacttactctacaactcttgtattgaatataacatggcatcagcaacgacttctcaacttctaggtagccatacctgtacaccaagggattttgcattatatgttccattttggcaatgttgacttgttttttgaatcaactgtactttatggcaaaaaaaaaaaaaacttgggagcattgaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="99150" stop="95677"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98850" g_stop="98791" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.827" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97304" g_stop="97111" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="254" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="96499" g_stop="95977" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="777" r_length="523" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="790"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U326827" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98850" e_stop="98791"/>
          <exon e_start="97304" e_stop="97111"/>
          <exon e_start="96499" e_stop="95977"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTAGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAGGCAAGTTTATCTCTTTCAATTTTTGTTTGCTAGTTATTTTTTTTAATTAGGGTTTTTTCTGGGATTTTACATTAGTGGATTTGTTGTTTTGTGTGATGTTTTTGGTTCTCCTACTTTGGTGCTACTGATTAGGCAAATGCTGGAGGTTTTTTCAGGAAAGGGCCATACTTTATGTGATGCTTCCCTTTTCATGTTAAAGACTGATATAAGAGTGTTAAAAATCCTATCTTTCATGATTGTTTTCTCATCTTTGGCTTAGGCTGTCCTAATGAGTGAAATGGGGGAGTAACCTTATGATTTAATTGTTTGCTCGGGTGCAGTGTGTTTCATCAACGCTAAAATGGTCACCACAGTAAATTTCCTGTCTCTTTGTGGCTTGTTTGTATTTACAAGACTTTGCAGAAAAAATCTGTTGTCTTTAAACTAACATAAATTTGAAATGTCCAGTTCCTACCTGCTACGGCTAAACACTTCGTCATTATGATGGTCAGCTGTAGATGGTGTCTCTTTTGTTTGAAGAATGTAATCGAGTCTTTAGGTTAAGTCAGTGGAGATTCCCTCAAATAAGGATAGGAACTTTTTCTGGAGTAAATAAATCAACTTATATATTAGATCTGTAGCATCTTTTAGCCTCTATATATATGTAAACATGGACTTGCAGATTGATGTTATAAATTAAGGACCCTGCAGCTTGTTCCACTGCTGATTTCTCTTCAGGAGTTGATGCATGTAAAACTGTTGTAGTTTGTGGAGGTGTTGAGGAGGATCGAGCGCTGCAATTATTTTGTAGCAGACTTCATTAAGTTTCATGCAATGTCTGTCAGGAGGCTTAATTTGTTAGAAATTTGTTTGTAAGGGTAATGGACAAAATCTATGGAACTTAAATCTTATTAGTACTCCCTCTGTCCCAAAGTAGATGAGCACTTTTTATTTTACATGGTGATTAAGAAGTCATTAGTAGATTGATCTACTTTACTATTACCCTTTGTTCATATTAATTAGCCTCTTGAAAAAAGAAATTCTTGGATCTTTAAAATATGGGACAAATACTTTGAGTAAGCTGCCCTACTAATATGGGACGGTGGAAGTACTGATTTTCCATATAGGCAAAATATTTTAGGAGTGGAATGAAAACACAGTTGAATAGGATAGAATAAATACATATGATTCAAACAACTAGGACCAACTAATATCGGATTTGAAGCATATTTGAATGATTGGGGCTATTTCTTTTTTCTTGTCAAAATCACACTCATCCTCAGATCTTTTTTTTTATTCAATCCTACAAAGTGAATGTGAACTTTAATACATATGCAAATGCATCAGTAGTCAAATTCTCTATGCTCTAATCCCTGAGGCTAATTCTCTGTCTTATAGCCTGCAGGAAGATCTTGCTTGACACATGTTTAAGCAAGAATTTAGAAATCTGCAGAGCCACCTCACACTTTTTCCCCTGAAGCTAAAGTCGTTATCTTATAAACTGCAGGGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAATGTAAGTACTTTTAAATTCCTCTGTAGGTTAATTGTTACTATTGTCTATTTTTTAGAGTGGGTATAGTTAATGGGTGCAACTAGGGATGGCAATGGTGGTGGTGCGGGTCGGGTTGAGCTTGCCCCACATCTGCTCTGCCCCATTTCCATCTCTAGGTGCAACACTGATTATTTGATGCATACACATACTTAAATCTCTTTGATCATAATATGATGATTCTGAAATGAGTCATTCCTAGAAATTGGAATATAAGAATGTATTACAAACACTTGCTATCAATCAATCAAAATTCAGCTACACGGCTACATTAAGTAATTGGGGTTGGTTGGGTAAGTCCCCTGAATTATAAGCACTTGCTATGCAGTGGTAAAATGATTGTAACATTAGGTTTTCGTAAAGTAGCATTTGCAAATTTCGTGCAGGAGTATCATCTATATTTTATATTAAAAGCAAGAGTCCTCAAATTATTAAAGTTGTAGATTCTAAAATCGATCACAGTTTTATCAACTTATAGCAATGCCGTACACTTGACTAGTATACTTAATGTGAAGGTAAGCAAAAAATTTATTTTCTGGAATTTAACAATCAATTGATGTGTATATACTGTACAGGTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTATATGTTCCATTTTGGCAATGTTGACTTGTTTTTTGAATCAACTGTACTTTATGGCAAAAAAAAAAAAAACTTGGGAGCATTGACA</genome_strand>
        <mrna_strand>GAAGTAGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTATATGTTCCATTTTGGCAATGTTGACTTGTTTTTTGAATCAACTGTACTTTATGGCAAAAAAAAAAAAAACTTGGGAGCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343099" ref_strand="+" ref_description="SGN-U343099        Tomato 200607 #1 [1 ESTs aligned] genbank/nr: gi|3402817|emb|CAA07704.1| lacZ' [Cloning vector pGreen](evalue: 1e-19, score=99.8)">
      <seq>ttgatggaagcaactttgttttcccctgcgcgctgcaaaggtgaattttatatgcaccattatagtagctttgaggctgattcaagcgtaaaaaactaatcagatgtccgagttcttcgattaggccttcagtgcctgctctgtttgtaccagccaattggaggcaagaagctgatgagactttggaggattccttcgtcaccttcacttgaaaattttgactttcttattgctctttgtaaaggaacacattgattacacagggtatattgaacggatcaaggtgttttttgtcccaaacagacttgaggtggttccagttttgtacgtggacatggttagcttgtaatcatcattaaaaccaaattcctattctgaaaaatccctacttataactcttgtatgtatctttcttttttgcataaattcagctgaggctatctggaactcttgtaatcagtcaatttctgttgcttttgattataatagtggaacttttgcgttaagttggttacttgggtcattcaatgaaattcttactatgaggccaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="100048" stop="98896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99748" g_stop="99199" g_length="550"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="550" polyA_stop="561"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U343099" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="99748" e_stop="99199"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATGGAAGCAACTTTGTTTTCCCCTGCGCGCTGCAAAGGTGAATTTTATATGCACCATTATAGTAGCTTTGAGGCTGATTCAAGCGTAAAAAACTAATCAGATGTCCGAGTTCTTCGATTAGGCCTTCAGTGCCTGCTCTGTTTGTACCAGCCAATTGGAGGCAAGAAGCTGATGATACTTTGGAGGATTCCTTCGTCACCTTCACTTGAAAATTTTGACTTTCTTATTGCTCTTTGTAAAGGAACACATTGATTACACAGGGTATATTGAACGGATCAAGGTGTTTTTTGTCCCAAACAGACTTGAGGTGGTTCCAGTTTTGTACGTGGACATGGTTAGCTTGTAATCATCATTAAAACCAAATTCCTATTCTGAAAAATCCCTACTTATAACTCTTGTATGTATCTTTCTTTTTTGCATAAATTCAGCTGAGGCTATCTGGAACTCTTGTAATCAGTCAATTTCTGTTGCTTTTGATATATAATAGTGGAACTTTTGCGTTAAGTTGGTTACTTGGGTCATTCAATGAAATTCTTACTATGAGGCC</genome_strand>
        <mrna_strand>TTGATGGAAGCAACTTTGTTTTCCCCTGCGCGCTGCAAAGGTGAATTTTATATGCACCATTATAGTAGCTTTGAGGCTGATTCAAGCGTAAAAAACTAATCAGATGTCCGAGTTCTTCGATTAGGCCTTCAGTGCCTGCTCTGTTTGTACCAGCCAATTGGAGGCAAGAAGCTGATGAGACTTTGGAGGATTCCTTCGTCACCTTCACTTGAAAATTTTGACTTTCTTATTGCTCTTTGTAAAGGAACACATTGATTACACAGGGTATATTGAACGGATCAAGGTGTTTTTTGTCCCAAACAGACTTGAGGTGGTTCCAGTTTTGTACGTGGACATGGTTAGCTTGTAATCATCATTAAAACCAAATTCCTATTCTGAAAAATCCCTACTTATAACTCTTGTATGTATCTTTCTTTTTTGCATAAATTCAGCTGAGGCTATCTGGAACTCTTGTAATCAGTCAATTTCTGTTGCTTTTGAT-TATAATAGTGGAACTTTTGCGTTAAGTTGGTTACTTGGGTCATTCAATGAAATTCTTACTATGAGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326112" ref_strand="+" ref_description="SGN-U326112        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein | chr1:7259091-7260764 REVERSE | Aliases: F9H16.15, F9H16_15(evalue: 8e-41, score=164) genbank/nr: HSP20-like(evalue: 4e-43, score=177)">
      <seq>tgcataaaacatggctgttgcaacataaagtttgaaaaagcttgggtgttcaatgaataggaattagttttggagttggataactgttgaatgcttacagtatgtttctgatgaaagatatggtgaacatggaaagtcagtaaatgtcaaacatggaatgcttacatcctaaaaagaagattaagagaatactttggaagcggtccaaggagaaatcgaatggggaagactctgctggaaatggtacatcattgatgaagatggaacacaatgtgacaaagaggcatcattctgattcaatgaccagtggtgtagacaggccttgcatgatgtcacttctccctcttcccaacttggaatattgtaactcggggggccctgctatcttgacaggaacggcatgcaaaggggtagctggaccacctgttggagttgttgatatcggtgttagcatatctgcttactattttcgtattgctctacctggagtcaagaaagatcctggtgagttcaactgtgagattgaaaaagatgggaaggtccttattcggggggtgacatcaactggtggaagaaccgtatcaagatattctcgggtctttgatatgaaaattcagcaacaatgtccatctggtcctttcaccgtctcctttcgtttgcccgggcctgtcgatccgaggttgttttcaccaaatttcagatcagatggcatttttgaagctgttgtaatgaaatacgagcagtagctagttcatgtaaacaaccattaaagtcagaacccaccacagaaagctgtctgctcttgnatttcttgttatgattagtggtgggctgaaagctaatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="-" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="106328" stop="102869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106028" g_stop="105968" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="105967" i_stop="105015" i_length="953">
            <donor d_prob="0.697" d_score="1.00"/>
            <acceptor a_prob="0.637" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="105014" g_stop="104572" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="504" r_length="443" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="104571" i_stop="103510" i_length="1062">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="103509" g_stop="103169" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="845" r_length="341" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="-" ref_id="SGN-U326112" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106028" e_stop="105968"/>
          <exon e_start="105014" e_stop="104572"/>
          <exon e_start="103509" e_stop="103169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGGGTTAAAAAGCTCTTACTCTTTTGCTTAGTTTATATCTTTGTTTTAGATTTTCTGTAAACTGACTGACTATTCTGTTTGTCAAGTTACTGAGTTATGTTCTGAACTAACTAATAGTAATGACGAGTTGGTTGATAGATTTGAACATGAAGTGGCTCATGCTTGCAGTTATAGGTAGTCGCTGATTTTGTTAACGTTCCAATTGTAACCAGAAAATCCCATTCCCTAGGGCACACTAAACCTCTTTTTGACCCAAGTAGTTTTTGTCCCACTCAGGCTAGGCATGTGGATTGAACAAATAACTGATTTTCCTATTGTTTTAGTGCCAGTAATTAAATGTATATGCCTATTATAATGTCACGAACTTACTTACTTCTCCAATTTTCCTCTAATTTATGTTTTCAACTGTTAGTAAGGTTGACACCAGCCTAGGAGTTAGTTTCTTCTATTTGAATCCCTCCTCTCTCCATATGTGCTGGTGACATGTGTGTAAACCAGGGATTAATGGCTTATAGAACATCTAGGGATTTGGTTAATGCTTTACATTTAGTAGCTTGCTTATGCTCAGTGGTTTAGTAGCTTGTAGAACATCTGTTGATCCTGGAGGTTCAGTTAATGCTTTACACTAAGTAGCTTGCTTATGTTCAGGGTCAGTTCCAGTTAAACCTGTCAATAAACTCACCTCATCTCTCTTTTCTTTATTTTATTGGCCTCTTGACACTGGGTATTGCCATAGCATATAGCTACTAAAAGCACATCTCCTAGGTATTTGCACATACTGTAATGGACTTGCTTATAGATTCTATGTAGTAGTATAACTTGCATATTACAGTATTTTCTCTGAATTTCTTTTTGTGCCCAAGGGTTCTTTCTTTTTCCCAGTTTAAACCTTTTTTGGTAGTTGTTCTTTTTGACCTTTTTCCTACCTGAGTTCTTCTTGCTTCTTTTGATGGCAGAATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTGGTTTGTTACTTTACCTTTTACTTTGTTGCCTTTCCGTAATATGTTTGAATGTGCTAATTTGCTTTAAGGTCTTAGTCAGCAGAGATCTTGGTTATAATTTATGTGGATCAGATATTACAGAACTGATATTACCAAGCTGTTACTGCAGAAGGACCTAAAGCAAATAGTAGTTCATGAAGCTTGTGCTTTTGACCAATCACATATGGTTGCCCTTTGACTGATTTACTCTATTATATGACTAAGGCCTTGTGAGTCAATGGTCCCACAGATATTCATGGAAGTATCGCATAACATCTATGTTGCTGATCTTTTTTTACCACTGACCATCAGCCGAGGAACTTATCATATTGCATGCAATGAAATCCACATCCAGTCACAATATAGAGAGTTGGGAAGCATGCCGAATGTGAGAAATATGGCTTGAATTGGGAAGTTCATTATGCTGCATGTCTCTGATTGCAGTTAGGGGATGTGGATGAGTCTGATATGAATTTAATTTTGTGCATTTGTTTTCACTGATGATAGGATACTATTTCGACAGAAATTAAAACAAATAGATGGGAATTTCTATGTGTAACTTGTTCATTTTCCTAATGCACACTCAGCTAGGATTGGTTGATGGATGTAGTCCAATATAAACAAAAAGATAAATTTAACAACCATATTCCTGTGTTAAGCTTCTAACGCTACCTCATGATGTCTATTTGAGAAAGAAATATATGGGCAATTATTATGTGGAGATGCTTCTGAATTTACTCATTATTGGCCTGTCTATGATCCTTATATAGTTTTTTTTCGATATCTAGCAATCACGACATTATCATAGAAAAGCTGCTATCCTGATAGAATTCTTGTATGTCAGATTTCTCTGCCTAGCACTCAGAAAACGAGATTGGCTGATACCGTTTAAGTTCTTGTTCTCCATATTGACTGATCCTGTTTTCTGATTTTACTACAGAGTAAAGACTGCATCCATTGGTGCAAATAGATTCACAAACTTCCATGACCATGGTGGTATCTCCATCATATTTACTAAATGAACACTTTAACCCCTTGTTGCAGGTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGGGCCTGTCGATCCGAGGTTGTTTTCACCAAATTTCAGATCAGATGGCATTTTTGAAGCTGTTGTAATGAAATACGAGCAGTAGCTAGTTCATGTAAACAACCATTAAAGTCAGAACCCACCACAGAAAGCTGTCTGCTCTTGGATTTCTTGTTATGATTAGTGGTGGGCTGAAGGCTAATGT</genome_strand>
        <mrna_strand>TGCATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGGGCCTGTCGATCCGAGGTTGTTTTCACCAAATTTCAGATCAGATGGCATTTTTGAAGCTGTTGTAATGAAATACGAGCAGTAGCTAGTTCATGTAAACAACCATTAAAGTCAGAACCCACCACAGAAAGCTGTCTGCTCTTGNATTTCTTGTTATGATTAGTGGTGGGCTGAAAGCTAATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327344" ref_strand="+" ref_description="SGN-U327344        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: AT2G33630.1 | Symbol: None | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain; similar to NAD(P)-dependent cholesterol dehydrogenase (Nocardia sp.) (GI:216809) | chr2:14243467-14245866 REVERSE | Aliases: F4P9.40, F4P9_40 (evalue: 2e-100, score=362) genbank/nr: gi|15226138|ref|NP_180921.1| 3-beta hydroxysteroid dehydrogenase/isomerase family [Arabidopsis thaliana] gi|25408295|pir||H84747 probable steroid dehydrogenase [imported] - Arabidopsis thaliana gi|2459443|gb|AAB80678.1| putative steroid dehydrogenase [Arabidopsis thaliana] gi|16226673|gb|AAL16229.1| At2g33630/F4P9.40 [Arabidopsis thaliana] gi|20260208|gb|AAM13002.1| putative steroid dehydrogenase [Arabidopsis thaliana](evalue: 1e-98, score=362)">
      <seq>gaaggagagaaaaatgcatctgagcgaaaacgaagggatagagaagaagagtttcgtggttactggtggacttggttttataggcgccgcactttgtgttgaactcttcagaaggggtgctcgtcttgtcaaagcatttgatcttagaacccattctccttggtcatctcaactccgtcaatgtggggttcaaatcattcaaggggatataacagacaaacaacaagtccagaaagcactacaagggtcagattgtgttttccatcttgcttcttatggcatgtccgggaaagaaatgcttcagtatagtcgtgttgatgaggttaatattaatggaacctgccacattattgatgcttgccttcaccatcacattaagaggcttgtttatgtcagcacacctaatgttgtttatggtggtaaggaaattcttaatggcaatgagaacctaccttatttcccaatagatgaccatgttgatccatatggacgaagcaaatcaattgctgaacaattggtcctaaagagcaaccgtcgtcccttcactaagaacaatggtgaatgcctttacacctgcgcaattcgtccagctgctatatatggtccaggtgaagaaaggcacctgccaaggatcataactcttacaaagctaggtctgtttccctttaaaatcggttcaccaaatgtaaaatcagattgggtgtacgtcgacaatcttgtattggcgcttttattggctagcatgggacttttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="109510" stop="111594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109810" g_stop="110012" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="203" r_length="203" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="110013" i_stop="110268" i_length="256">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="110269" g_stop="110611" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="546" r_length="343" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110612" i_stop="111081" i_length="470">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111082" g_stop="111294" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="759" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U327344" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327344" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109810" e_stop="110012"/>
          <exon e_start="110269" e_stop="110611"/>
          <exon e_start="111082" e_stop="111294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCGTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAGGTATCCCTTATCCACATTTCCCATTCAACTCAACTTTTCTGATTCAGTTTACATTTCACTCGTTCTTGCTCAAAATATTCTGTTCAATTCAACATTTGGCGGATTGACTAGAATCCCAATTCCGATTAATATGAGGTGCCGGCTTTATTGATTGATTATTAAGGAATTTGTCACTCCTCTTTCTATGATTCCAGAAACGGATGATATATATATGTATATTCACTATTACACTCGTTCCTTTCTGCTCAATGGTCAGGGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCACGTAAGTTATTTTTTACATCAACATTTCATTCACAATCCACTGAAATATATCCTGTAAATGTATGCTCTTTATACAATCTACTGCAGTGACCTATCATTATGTACCATATGCTACATACTATAGAAAATAGCTGATGTCTAGACTAAATAGTTGCATTTGCAAGATTGTTTTTACTGGAGGATAAGTTTCCTTTTTTATAGAAATTACAAAATGAGCAAAATCTCTTCGGCTTTCCTTTGCTAGTGCAAACTTTTTTTAATCAGTCTCTCCAAGTCAAACATGTATGACAAAAAGCTGCCAAAACCCTTTGTAGTGATGCTAGTAACCCCTCAGCTGTTTGGCCTTTTCAGCTCTGCGTGTGTATATGTATATTTATGATTGTTTACAGCAAGAACTGCTACTTGATATTGTATTGACATAATTTTATATGGGTGTTTTCTCTCTTCTTGGCATGTATCTTCATTGGACAGTAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGA</genome_strand>
        <mrna_strand>GAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCTTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAG................................................................................................................................................................................................................................................................GGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U327132" ref_strand="+" ref_description="SGN-U327132        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: AT2G33630.1 | Symbol: None | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain; similar to NAD(P)-dependent cholesterol dehydrogenase (Nocardia sp.) (GI:216809) | chr2:14243467-14245866 REVERSE | Aliases: F4P9.40, F4P9_40 (evalue: 3e-95, score=345) genbank/nr: gi|15226138|ref|NP_180921.1| 3-beta hydroxysteroid dehydrogenase/isomerase family [Arabidopsis thaliana] gi|25408295|pir||H84747 probable steroid dehydrogenase [imported] - Arabidopsis thaliana gi|2459443|gb|AAB80678.1| putative steroid dehydrogenase [Arabidopsis thaliana] gi|16226673|gb|AAL16229.1| At2g33630/F4P9.40 [Arabidopsis thaliana] gi|20260208|gb|AAM13002.1| putative steroid dehydrogenase [Arabidopsis thaliana](evalue: 2e-93, score=345)">
      <seq>ttttggatgacatccctggcagagaagggcatccaattgctgctggtcaaccttattttatatcagatggttctcctatcaacagtttcgagttccttcgccctttactgaaaagcctggattatgatctaccaaagacatcactagctgtctctcatgcacttcttctgggaagaattttctgggctttctactcctttctgtatccttggttgaatagtaggtggcttcctcaacctctgatccttcctgctgaagtctacaaggttggtgtcactcattacttctctttcctaaaagcaaaagaggaacttggttacgtcccaatggtaagttctaaggagggcatggcagcaacaattgcatattggcaagaaagaaaacgtaggagtttggacggacctacaatatgggcatggctgttttgtgtaattggaatgttggggttgtttgctgctgcatatctgcccgactatggacccattcccttaattagagcagttcatctcttcttctttcgctctatattggcgttgaaagtgatatttgttctagcagctgctgcacatgtaggtgaagctatatatgcatggaatgttgcaaaaacaatagatcctgcaaatgcaagaggatggttttggcagacatttgctttggggatattttccctacgattacttctgaagagagctaaaaagtagggatcagcggccatatttctcttttaaaaaatatgaaggtttttttttataataaacgagtttaacttgtgatcctaatcttgtactgctttgcatctcctggactggattgtcccagaaaatccagggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110985" stop="113067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111285" g_stop="111353" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111580" g_stop="111776" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="266" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112201" g_stop="112773" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="838" r_length="572" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="839" polyA_stop="860"/>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U327132" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U327132" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111285" e_stop="111353"/>
          <exon e_start="111580" e_stop="111776"/>
          <exon e_start="112201" e_stop="112773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATGGTAAATACTCGTTGGCTTATATTTGTTGTGTAGGAATGTGGAATCTTGCTTTGGACCAAGTAGAGGTGTAATTACTAATTTCTAATTAAGATTATTCTTTTAGCATTCTCCAGAGACTTTAGAATCTAATTGCTTTTATCGGAGTAAAAAATGTTTCTATAAGCAGAGCAGTTTTTACTTGCTACTTACTGCATCACCTTCCTTCATCAATGATCTTCTGTTGCAGGTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTAGTGCTTCATATTTGAATCTATGTTTGCTTCTTTTATTCAAATGGATAGGCTTCACTAGCATTATCAAAAACCAGTTTTGTATACTACATATCTTTCCACCGGCTTTTACTCAGTTTATGGCATTTCTTACTACTGTGGAATTGATAATATATCTATACCTTGTGCATATCTAATTGGGCAAATGTAGCAGATTCTTTTTTATTTTTGTCACGAAGATGGTCTATATTGGTCAATAACTGTCAAATGGTTAAATACCTTAATTGTTTGACCTTGCGACAAGACTTGTTCCCTTAAGTCGTTACTTGTCCCTGTTCACACCTGTATTGATATCAAGCAATAGTAAACTCTCTCTGGTCACGGACACAACAATTGTATAAGAGGCAGAATTGTAGTTGATATTTGGTTTTCTGGTTGTGCTAGGTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAAGGAAATTGAAG</genome_strand>
        <mrna_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG..................................................................................................................................................................................................................................GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTT-AAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCCAGAAAATCCAGGGAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U338442" ref_strand="+" ref_description="SGN-U338442        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: AT2G33630.1 | Symbol: None | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain; similar to NAD(P)-dependent cholesterol dehydrogenase (Nocardia sp.) (GI:216809) | chr2:14243467-14245866 REVERSE | Aliases: F4P9.40, F4P9_40 (evalue: 1e-75, score=209) genbank/nr: gi|15226138|ref|NP_180921.1| 3-beta hydroxysteroid dehydrogenase/isomerase family [Arabidopsis thaliana] gi|25408295|pir||H84747 probable steroid dehydrogenase [imported] - Arabidopsis thaliana gi|2459443|gb|AAB80678.1| putative steroid dehydrogenase [Arabidopsis thaliana] gi|16226673|gb|AAL16229.1| At2g33630/F4P9.40 [Arabidopsis thaliana] gi|20260208|gb|AAM13002.1| putative steroid dehydrogenase [Arabidopsis thaliana](evalue: 1e-73, score=209)">
      <seq>ttttggatgacatccctggcagagaaaggcatccaattgctgctggtcaaccttattttatatcagatggttctcctatcaacagtttcgagttccttcgccctttactgaaaagcctggattatgatctaccaaagacatcactagctgtctctcatgcaccnnnttnntnnccntttnttnnnccctgggaagaattttctgggctttctactcctttctgtatccttggttgaatagtaggtggcttcctcaacctctgatccttcctgctgaagtctacaaggttggtgtcactcattacttctctttcctaaaagcaaaagaggaacttggttacgtcccaatggtaagttctaaggagggcatggcagcaacaattgcatattggcaagaaagaaaacgtatgagtttggacggacctacaatatgggcatggctgttttgtgtaattggaatgttggggttgtttgctgctgcatatctgcccgactatggacccattcccttaattagagcagttcatctcttcttctttcgctctatattggcgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0289C05-jzeIQ/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0289C05.1" temp_strand="+" temp_description="C04HBa0289C05.1  CU074308.13 htgs_phase:3 submitted_to_sgn_as:C04HBa0289C05 sequenced_by:sanger upload_account_name:uk">
        <position start="110985" stop="112770"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111285" g_stop="111353" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226">
            <donor d_prob="0.977" d_score="0.98"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111580" g_stop="111776" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="286" r_length="217" r_score="0.797"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="112201" g_stop="112470" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="556" r_length="270" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0289C05.1" gen_strand="+" ref_id="SGN-U338442" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>536</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0289C05.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U338442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="111285" e_stop="111353"/>
          <exon e_start="111580" e_stop="111776"/>
          <exon e_start="112201" e_stop="112470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATGGTAAATACTCGTTGGCTTATATTTGTTGTGTAGGAATGTGGAATCTTGCTTTGGACCAAGTAGAGGTGTAATTACTAATTTCTAATTAAGATTATTCTTTTAGCATTCTCCAGAGACTTTAGAATCTAATTGCTTTTATCGGAGTAAAAAATGTTTCTATAAGCAGAGCAGTTTTTACTTGCTACTTACTGCATCACCTTCCTTCATCAATGATCTTCTGTTGCAGGTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCA-C----T--T---C-----TT-----CTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAGGTTAGTGCTTCATATTTGAATCTATGTTTGCTTCTTTTATTCAAATGGATAGGCTTCACTAGCATTATCAAAAACCAGTTTTGTATACTACATATCTTTCCACCGGCTTTTACTCAGTTTATGGCATTTCTTACTACTGTGGAATTGATAATATATCTATACCTTGTGCATATCTAATTGGGCAAATGTAGCAGATTCTTTTTTATTTTTGTCACGAAGATGGTCTATATTGGTCAATAACTGTCAAATGGTTAAATACCTTAATTGTTTGACCTTGCGACAAGACTTGTTCCCTTAAGTCGTTACTTGTCCCTGTTCACACCTGTATTGATATCAAGCAATAGTAAACTCTCTCTGGTCACGGACACAACAATTGTATAAGAGGCAGAATTGTAGTTGATATTTGGTTTTCTGGTTGTGCTAGGTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTG</genome_strand>
        <mrna_strand>TTTTGGATGACATCCCTGGCAGAGAAAGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG..................................................................................................................................................................................................................................GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACCNNNTTNNTNNCCNTTTNTTNNNCCCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTATGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="2827" PGL_stop="6871"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2827" e_stop="2913"/>
            <exon e_start="3045" e_stop="3163"/>
            <exon e_start="3936" e_stop="4115"/>
            <exon e_start="4684" e_stop="4740"/>
            <exon e_start="5293" e_stop="5360"/>
            <exon e_start="6368" e_stop="6871"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.980" acc_prob="0.742" e_score="1.000"/>
          <exon-intron don_prob="0.035" acc_prob="0.932" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.564" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.771" e_score="1.000"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2827" e_stop="2913" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.980" acc_prob="0.742">
            <gDNA_intron_boundary i_start="2914" i_stop="3044" i_length="131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="3045" e_stop="3163" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.035" acc_prob="0.932">
            <gDNA_intron_boundary i_start="3164" i_stop="3935" i_length="772"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3936" e_stop="4115" e_length="180"/>
          </exon>
          <intron i_serial="3" don_prob="0.955" acc_prob="0.983">
            <gDNA_intron_boundary i_start="4116" i_stop="4683" i_length="568"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4684" e_stop="4740" e_length="57"/>
          </exon>
          <intron i_serial="4" don_prob="0.564" acc_prob="0.995">
            <gDNA_intron_boundary i_start="4741" i_stop="5292" i_length="552"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="5293" e_stop="5360" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.964" acc_prob="0.771">
            <gDNA_intron_boundary i_start="5361" i_stop="6367" i_length="1007"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="6368" e_stop="6871" e_length="504"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2827" stop="2913"/>
              <exon start="3045" stop="3163"/>
              <exon start="3936" stop="4115"/>
              <exon start="4684" stop="4740"/>
              <exon start="5293" stop="5360"/>
              <exon start="6368" stop="6564"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U340364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6564" stop="6871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343064" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGAAGAGATGGAGAAGTGGAATGAGCTACAATCTCGATTACTATCTCAATTCAACAATGCTTCTTCCATCATTCAGAGGTTACAG : ATTCTTCAGGATTCTAAGAACTATGGTGCTTTGACATGTGTTGAAGCCATTCAGGAAGCTGTCTTGCTGAAACAGATGAATTCTCTACAAAATATCTTGCTTTCAATGAATGAAACTAT : GGAAAAGTTTCATGTGGTTGTGTTGTCGCTTGATAAGATGGTTCGTGATGGTAGACAGCTCATAAAAGGGGGATCCGTTCAGAAGAATGTGAAACAGCTACAGCAACACGTCGGGATGAAGCCTAGCATTGCTGATTGCTTGGATGGGCTACAACTTCTTTATGAGATGCACCAATCAGA : GTACCGTCTGAAATTGTCGGTCATATCAGCAATTTCAGCATTTGCTTTACAGCCTAG : TGCAACTGATGATTTAGCTGCACTTCAGCAACTGTTGGATGATCAGCCTAACATCCCCAAAGAGGAAG : TTCAAGTCATTTTTGAAATCATATTTGCTGAAGAGATAGCTTGATGTCTACTAAGCATGGATCCTTGGACTGATGAAGTGCTTTTGGAACTTGCAATGTGTTTTAAGTTAAGGAAGACTTCAGTTCTGGCTAAAGAGCAGGAAATATCTTGCACTTGGGTGCTACAGTGCTCGAACTCTTCAAGTGTATGTGTCGGATTTTCCAAAAACCAGTGTATTTTTAGAGGATCCGCCATGGGTGTGGCGACATTTTTGGAGAATCCAAGCAACACCGCTTTGGTGAAGCAGAGAATTATCTTGATTGATCACTGTAGATGGAAGGTTTTGGACCTTGGAAATGGAAGAGATGACTTTAAGTGTTGTGTATACTCAGTTTCATTTATTTATATGTCTGCAACTTTGTATAAACAACCTTTTGTTTTATTTTTCCTTGGTCAGTAGCATGGTTTTGATTAAACAGCTAAATCCAATAATACAATTTTAACACAAATTCTTCCTAATGTCT</gDNA_template>
            <first_frame> K  E  E  M  E  K  W  N  E  L  Q  S  R  L  L  S  Q  F  N  N  A  S  S  I  I  Q  R  L  Q  :  I  L  Q  D  S  K  N  Y  G  A  L  T  C  V  E  A  I  Q  E  A  V  L  L  K  Q  M  N  S  L  Q  N  I  L  L  S  M  N  E  T  M :   E  K  F  H  V  V  V  L  S  L  D  K  M  V  R  D  G  R  Q  L  I  K  G  G  S  V  Q  K  N  V  K  Q  L  Q  Q  H  V  G  M  K  P  S  I  A  D  C  L  D  G  L  Q  L  L  Y  E  M  H  Q  S  E :   Y  R  L  K  L  S  V  I  S  A  I  S  A  F  A  L  Q  P  S :   A  T  D  D  L  A  A  L  Q  Q  L  L  D  D  Q  P  N  I  P  K  E  E   : V  Q  V  I  F  E  I  I  F  A  E  E  I  A  *  C  L  L  S  M  D  P  W  T  D  E  V  L  L  E  L  A  M  C  F  K  L  R  K  T  S  V  L  A  K  E  Q  E  I  S  C  T  W  V  L  Q  C  S  N  S  S  S  V  C  V  G  F  S  K  N  Q  C  I  F  R  G  S  A  M  G  V  A  T  F  L  E  N  P  S  N  T  A  L  V  K  Q  R  I  I  L  I  D  H  C  R  W  K  V  L  D  L  G  N  G  R  D  D  F  K  C  C  V  Y  S  V  S  F  I  Y  M  S  A  T  L  Y  K  Q  P  F  V  L  F  F  L  G  Q  *  H  G  F  D  *  T  A  K  S  N  N  T  I  L  T  Q  I  L  P  N  V  </first_frame>
            <second_frame>  R  K  R  W  R  S  G  M  S  Y  N  L  D  Y  Y  L  N  S  T  M  L  L  P  S  F  R  G  Y  R :   F  F  R  I  L  R  T  M  V  L  *  H  V  L  K  P  F  R  K  L  S  C  *  N  R  *  I  L  Y  K  I  S  C  F  Q  *  M  K  L   : W  K  S  F  M  W  L  C  C  R  L  I  R  W  F  V  M  V  D  S  S  *  K  G  D  P  F  R  R  M  *  N  S  Y  S  N  T  S  G  *  S  L  A  L  L  I  A  W  M  G  Y  N  F  F  M  R  C  T  N  Q   : S  T  V  *  N  C  R  S  Y  Q  Q  F  Q  H  L  L  Y  S  L   : V  Q  L  M  I  *  L  H  F  S  N  C  W  M  I  S  L  T  S  P  K  R  K  :  F  K  S  F  L  K  S  Y  L  L  K  R  *  L  D  V  Y  *  A  W  I  L  G  L  M  K  C  F  W  N  L  Q  C  V  L  S  *  G  R  L  Q  F  W  L  K  S  R  K  Y  L  A  L  G  C  Y  S  A  R  T  L  Q  V  Y  V  S  D  F  P  K  T  S  V  F  L  E  D  P  P  W  V  W  R  H  F  W  R  I  Q  A  T  P  L  W  *  S  R  E  L  S  *  L  I  T  V  D  G  R  F  W  T  L  E  M  E  E  M  T  L  S  V  V  Y  T  Q  F  H  L  F  I  C  L  Q  L  C  I  N  N  L  L  F  Y  F  S  L  V  S  S  M  V  L  I  K  Q  L  N  P  I  I  Q  F  *  H  K  F  F  L  M  S </second_frame>
            <third_frame>   G  R  D  G  E  V  E  *  A  T  I  S  I  T  I  S  I  Q  Q  C  F  F  H  H  S  E  V  T   : D  S  S  G  F  *  E  L  W  C  F  D  M  C  *  S  H  S  G  S  C  L  A  E  T  D  E  F  S  T  K  Y  L  A  F  N  E  *  N  Y  :  G  K  V  S  C  G  C  V  V  A  *  *  D  G  S  *  W  *  T  A  H  K  R  G  I  R  S  E  E  C  E  T  A  T  A  T  R  R  D  E  A  *  H  C  *  L  L  G  W  A  T  T  S  L  *  D  A  P  I  R  :  V  P  S  E  I  V  G  H  I  S  N  F  S  I  C  F  T  A  *  :  C  N  *  *  F  S  C  T  S  A  T  V  G  *  S  A  *  H  P  Q  R  G  S :   S  S  H  F  *  N  H  I  C  *  R  D  S  L  M  S  T  K  H  G  S  L  D  *  *  S  A  F  G  T  C  N  V  F  *  V  K  E  D  F  S  S  G  *  R  A  G  N  I  L  H  L  G  A  T  V  L  E  L  F  K  C  M  C  R  I  F  Q  K  P  V  Y  F  *  R  I  R  H  G  C  G  D  I  F  G  E  S  K  Q  H  R  F  G  E  A  E  N  Y  L  D  *  S  L  *  M  E  G  F  G  P  W  K  W  K  R  *  L  *  V  L  C  I  L  S  F  I  Y  L  Y  V  C  N  F  V  *  T  T  F  C  F  I  F  P  W  S  V  A  W  F  *  L  N  S  *  I  Q  *  Y  N  F  N  T  N  S  S  *  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2827" stop="2913"/>
                    <exon start="3045" stop="3163"/>
                    <exon start="3936" stop="4115"/>
                    <exon start="4684" stop="4740"/>
                    <exon start="5293" stop="5360"/>
                    <exon start="6368" stop="6411"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>552</number_coding_nucleotides>
                  <number_encoded_amino_acids>184</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEEMEKWNELQSRLLSQFNNASSIIQRLQILQDSKNYGALTCVEAIQEAVLLKQMNSLQNILLSMNETMEKFHVVVLSLDKMVRDGRQLIKGGSVQKNVKQLQQHVGMKPSIADCLDGLQLLYEMHQSEYRLKLSVISAISAFALQPSATDDLAALQQLLDDQPNIPKEEVQVIFEIIFAEEIA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6412" stop="6807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLLSMDPWTDEVLLELAMCFKLRKTSVLAKEQEISCTWVLQCSNSSSVCVGFSKNQCIFRGSAMGVATFLENPSNTALVKQRIILIDHCRWKVLDLGNGRDDFKCCVYSVSFIYMSATLYKQPFVLFFLGQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="7789" PGL_stop="12241"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7789" e_stop="8014"/>
            <exon e_start="8743" e_stop="9310"/>
            <exon e_start="9444" e_stop="9753"/>
            <exon e_start="12057" e_stop="12241"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.981" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.776" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.831" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="7789" e_stop="8014" e_length="226"/>
          </exon>
          <intron i_serial="1" don_prob="0.981" acc_prob="0.987">
            <gDNA_intron_boundary i_start="8015" i_stop="8742" i_length="728"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8743" e_stop="9310" e_length="568"/>
          </exon>
          <intron i_serial="2" don_prob="0.776" acc_prob="0.998">
            <gDNA_intron_boundary i_start="9311" i_stop="9443" i_length="133"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9444" e_stop="9753" e_length="310"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.831">
            <gDNA_intron_boundary i_start="9754" i_stop="12056" i_length="2303"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="12057" e_stop="12241" e_length="185"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7789" stop="8014"/>
              <exon start="8743" stop="9310"/>
              <exon start="9444" stop="9753"/>
              <exon start="12057" stop="12241"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325270" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGTTTGTATTCATCTAAACCCCTGCTGCCAGCTCCTTTTCCTTCCTTTCTTCTTCCTCACCCCCAAACCAACCACAATCCATGCCCCCATTCTAACCCTAATTCAAGATTCATGGAAGAAATTGAATTGTGCTTAATTTCATCCTTGGGTTTTGTTTGAGAATTGATTTCATAAATTCCCTTTGAGTCTTGTGAGCTGAGTAACACAGTCTTGTTTTCATAAAG : GTACAAAGCTTTAATGGCTGAAAGCTGGGATGGGAATCATGATCCTGGTAGCCCGTCTGAGGAGAGTTACCATCTCGAGAGACTGCACATAGAACCAATTTATGATGCATTCATATGCCCTTTGACAAAACAAGTAATGCAGGATCCTGTTACTCTGGAAAATGGCATGACTTTTGAGAGGGAAGCTATTGAGAAATGGTTCAAGGAGTGTAGGGATAGTGGAAGAAAGCCTGTTTGCCCTTTAACACATAGAGATCTGAAAAGCACAGAGCTGAATCCAAGTATAGCTCTACGAAATACCATTGAAGAATGGAATGCAAGGAATGAAGCTGCACAAATTGATATGGCTCGCAGATCATTATCTATGGGTAGTGCGGAGGGTGATATTATGCAGGCTTTAAAGTTTGTTCAGCACCTTTGCCAAAAAAGTCGCGCCAACAAACATGTTATCAGGAATGCAGATCTCATACCCATGATTGTAGACATGTTAAAAACCAGTAGCCGCAGAGTTCGATGTAAAGCTCTTGAAACGCTTCTAGTTGTGGTAGAGGACGATGATGACAATAAG : GAAACAATGGCTGAGGGCGACAATGTACGCACAATAGTCAAATTCTTATCAAATGAACAATCCAAAGAAAGAGAGGCAGCCATTTCTTTGCTGTATGAGCTATCCAAATCTAAAAATTTGTGCGGAAAGATCGGTTCAGTTAATGGGGCCATTCTAATTCTGGTTGGGATGGCCAGCAGCAAATCTGAGAATCTTGTGACTGTTGAAAAGGCTGAGAATACTCTGGAGAATCTGGAAAAGTGTGAGATTAATGTAAAACAAATGGCAGAAAATGGCCGGCTGCAACCCCTATTAACTCTACTACTTGAAG : GATCATCAGAGACCAAACTCTCCATGGCTGTTTTCCTTGGTGAGCTGGTTCTTAATAATGATGTGAAAGTGTTAGTGGCTAGAACTGTTGGTTCATCACTGATCAGTATCATGAGACATGGTAATATGTCATCAAGGGAGGCTGCTCTAAAATCTCTAAATCAAATATCATCTGATGAGTCTAGT</gDNA_template>
            <first_frame> F  V  C  I  H  L  N  P  C  C  Q  L  L  F  L  P  F  F  F  L  T  P  K  P  T  T  I  H  A  P  I  L  T  L  I  Q  D  S  W  K  K  L  N  C  A  *  F  H  P  W  V  L  F  E  N  *  F  H  K  F  P  L  S  L  V  S  *  V  T  Q  S  C  F  H  K   : G  T  K  L  *  W  L  K  A  G  M  G  I  M  I  L  V  A  R  L  R  R  V  T  I  S  R  D  C  T  *  N  Q  F  M  M  H  S  Y  A  L  *  Q  N  K  *  C  R  I  L  L  L  W  K  M  A  *  L  L  R  G  K  L  L  R  N  G  S  R  S  V  G  I  V  E  E  S  L  F  A  L  *  H  I  E  I  *  K  A  Q  S  *  I  Q  V  *  L  Y  E  I  P  L  K  N  G  M  Q  G  M  K  L  H  K  L  I  W  L  A  D  H  Y  L  W  V  V  R  R  V  I  L  C  R  L  *  S  L  F  S  T  F  A  K  K  V  A  P  T  N  M  L  S  G  M  Q  I  S  Y  P  *  L  *  T  C  *  K  P  V  A  A  E  F  D  V  K  L  L  K  R  F  *  L  W  *  R  T  M  M  T  I  R :   K  Q  W  L  R  A  T  M  Y  A  Q  *  S  N  S  Y  Q  M  N  N  P  K  K  E  R  Q  P  F  L  C  C  M  S  Y  P  N  L  K  I  C  A  E  R  S  V  Q  L  M  G  P  F  *  F  W  L  G  W  P  A  A  N  L  R  I  L  *  L  L  K  R  L  R  I  L  W  R  I  W  K  S  V  R  L  M  *  N  K  W  Q  K  M  A  G  C  N  P  Y  *  L  Y  Y  L  K  :  D  H  Q  R  P  N  S  P  W  L  F  S  L  V  S  W  F  L  I  M  M  *  K  C  *  W  L  E  L  L  V  H  H  *  S  V  S  *  D  M  V  I  C  H  Q  G  R  L  L  *  N  L  *  I  K  Y  H  L  M  S  L   </first_frame>
            <second_frame>  L  F  V  F  I  *  T  P  A  A  S  S  F  S  F  L  S  S  S  S  P  P  N  Q  P  Q  S  M  P  P  F  *  P  *  F  K  I  H  G  R  N  *  I  V  L  N  F  I  L  G  F  C  L  R  I  D  F  I  N  S  L  *  V  L  *  A  E  *  H  S  L  V  F  I  K  :  V  Q  S  F  N  G  *  K  L  G  W  E  S  *  S  W  *  P  V  *  G  E  L  P  S  R  E  T  A  H  R  T  N  L  *  C  I  H  M  P  F  D  K  T  S  N  A  G  S  C  Y  S  G  K  W  H  D  F  *  E  G  S  Y  *  E  M  V  Q  G  V  *  G  *  W  K  K  A  C  L  P  F  N  T  *  R  S  E  K  H  R  A  E  S  K  Y  S  S  T  K  Y  H  *  R  M  E  C  K  E  *  S  C  T  N  *  Y  G  S  Q  I  I  I  Y  G  *  C  G  G  *  Y  Y  A  G  F  K  V  C  S  A  P  L  P  K  K  S  R  Q  Q  T  C  Y  Q  E  C  R  S  H  T  H  D  C  R  H  V  K  N  Q  *  P  Q  S  S  M  *  S  S  *  N  A  S  S  C  G  R  G  R  *  *  Q  *   : G  N  N  G  *  G  R  Q  C  T  H  N  S  Q  I  L  I  K  *  T  I  Q  R  K  R  G  S  H  F  F  A  V  *  A  I  Q  I  *  K  F  V  R  K  D  R  F  S  *  W  G  H  S  N  S  G  W  D  G  Q  Q  Q  I  *  E  S  C  D  C  *  K  G  *  E  Y  S  G  E  S  G  K  V  *  D  *  C  K  T  N  G  R  K  W  P  A  A  T  P  I  N  S  T  T  *  R :   I  I  R  D  Q  T  L  H  G  C  F  P  W  *  A  G  S  *  *  *  C  E  S  V  S  G  *  N  C  W  F  I  T  D  Q  Y  H  E  T  W  *  Y  V  I  K  G  G  C  S  K  I  S  K  S  N  I  I  *  *  V  *  </second_frame>
            <third_frame>   C  L  Y  S  S  K  P  L  L  P  A  P  F  P  S  F  L  L  P  H  P  Q  T  N  H  N  P  C  P  H  S  N  P  N  S  R  F  M  E  E  I  E  L  C  L  I  S  S  L  G  F  V  *  E  L  I  S  *  I  P  F  E  S  C  E  L  S  N  T  V  L  F  S  *  R :   Y  K  A  L  M  A  E  S  W  D  G  N  H  D  P  G  S  P  S  E  E  S  Y  H  L  E  R  L  H  I  E  P  I  Y  D  A  F  I  C  P  L  T  K  Q  V  M  Q  D  P  V  T  L  E  N  G  M  T  F  E  R  E  A  I  E  K  W  F  K  E  C  R  D  S  G  R  K  P  V  C  P  L  T  H  R  D  L  K  S  T  E  L  N  P  S  I  A  L  R  N  T  I  E  E  W  N  A  R  N  E  A  A  Q  I  D  M  A  R  R  S  L  S  M  G  S  A  E  G  D  I  M  Q  A  L  K  F  V  Q  H  L  C  Q  K  S  R  A  N  K  H  V  I  R  N  A  D  L  I  P  M  I  V  D  M  L  K  T  S  S  R  R  V  R  C  K  A  L  E  T  L  L  V  V  V  E  D  D  D  D  N  K  :  E  T  M  A  E  G  D  N  V  R  T  I  V  K  F  L  S  N  E  Q  S  K  E  R  E  A  A  I  S  L  L  Y  E  L  S  K  S  K  N  L  C  G  K  I  G  S  V  N  G  A  I  L  I  L  V  G  M  A  S  S  K  S  E  N  L  V  T  V  E  K  A  E  N  T  L  E  N  L  E  K  C  E  I  N  V  K  Q  M  A  E  N  G  R  L  Q  P  L  L  T  L  L  L  E   : G  S  S  E  T  K  L  S  M  A  V  F  L  G  E  L  V  L  N  N  D  V  K  V  L  V  A  R  T  V  G  S  S  L  I  S  I  M  R  H  G  N  M  S  S  R  E  A  A  L  K  S  L  N  Q  I  S  S  D  E  S  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8013" stop="8014"/>
                    <exon start="8743" stop="9310"/>
                    <exon start="9444" stop="9753"/>
                    <exon start="12057" stop="12241"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1065</number_coding_nucleotides>
                  <number_encoded_amino_acids>355</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYKALMAESWDGNHDPGSPSEESYHLERLHIEPIYDAFICPLTKQVMQDPVTLENGMTFEREAIEKWFKECRDSGRKPVCPLTHRDLKSTELNPSIALRNTIEEWNARNEAAQIDMARRSLSMGSAEGDIMQALKFVQHLCQKSRANKHVIRNADLIPMIVDMLKTSSRRVRCKALETLLVVVEDDDDNKETMAEGDNVRTIVKFLSNEQSKEREAAISLLYELSKSKNLCGKIGSVNGAILILVGMASSKSENLVTVEKAENTLENLEKCEINVKQMAENGRLQPLLTLLLEGSSETKLSMAVFLGELVLNNDVKVLVARTVGSSLISIMRHGNMSSREAALKSLNQISSDESS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="15735" PGL_stop="14237"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15735" e_stop="14237"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="15735" e_stop="14237" e_length="1499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15735" stop="14237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323687" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTGCTTATTGAGGCTTCCATTTATAAGTCTGGTGAATGCTAGGATGGTGTGCAAGAAATGGAGAAACTTGACACTGACACCTCGTTTCTGGCGAATGAGGCAGGAAGGTTCATTCCAGCGTCCATGGTTGTTTCTTTTTGGAGTTGTAAAAGATGGTTGTTGTTCCGCAGAAATACATGCATTTGATGTTTCCTTCAACCAATGGCACAAAATGAATTCTGAAGTTCTGAAAGGGAGGTTTTTATTCTCTGTTGCTGGTATCCATGATGATGTTTACGTCGTTGGAGGTTGTTCTAGCATTGCTAACTTTGGGAAGGTTGATAAGAGCTCATTCAAGACACATAAAAGCGTGCTCGCTTTTAGTCCCTTGATGAGAATGTGGCGTAAAGCTGCACCAATGAAGCATGCAAGATCATCCCCTATCTTAGGTACTTATGAGATCAGTTCAGATTGTTTAATTATTAGGAATCAACAAACTCGAGGAGACAGAAGATTTTACCGTCCAAGAGTTGGTGGTGTGTCTGATGTTTATGAAGATCCTCATAGACTTTCAGTGAGACGCCAATTTCGCCATTCGCTGGATGAGAACGAGGTTACATTTTTGCCCAATGTGAAACCATACAAGTTTGTCAAACAAAAAAGCGAACATTCAAATAAAGATCAAAGACGCTTTCTCTTGATTGCTGTAGGAGGTCTCGGTTGCTGGGATGAGCCTCTGGATTCTGGGGAAATTTATGATTCCATGTCAAATAAATGGACAGAGATCCAGAGGCTTCCTGTAGATTTTGGAATAGCTTGTTCAGGGGTTGTGTGCAATGGGTTGTTTTATGTTTATTCAGAAAGTGATAAGCTAGCAGCATATGACGTTGAGAAGGGCTATTGGGTTAGAATCCAAACTAGTCCATTCCCTCCCCGAGTTCATGAATACCATCCTAAACTTATTTGCTGCAATAGTCGGCTATTCATGCTCTCTGTCTCCTGGTGTGAAGGGGAAGGTCAGATTGGCAGGAGAAACAAAGCAGTAAGGAAACTGTGGGAGCTAGATCTTATGCCTCTAACTTGGAGAGAAGTTTCAATCCATCCAGATGCCCCAATGGATTGGAATGCTGCATTTATAGCTGATAAAAACTCTATATTTGGAGTCGAAATGTTCAAAATATTCGGGCAGGTGCTAGACTTCTTGACCGTTGGAGATGTAACTGATGCTGGAATAAACTGGAGCCATATCTCAAGGAACCGTCTCGCGCAAGAATTGGATGCTGCTTCTTGCTTGACAAAATCCATGGCAGTAGTGCATTTGTAACCGATCAAGAACTCCAACTAGTCACAATATATGTGCAGTCATTTTTTCTCTCTCCTTTATTCTTTTGTTGTGGACGTTTGATGATGTTTAACTTAAATCTATATTCCATTTGTTTCTATTGATGTTATGCAGGTCATTCAATTGTTCTGTAATTTGTCTTTTGAGCAGTGAAATAATAAACTCTGGTTTTTAA</gDNA_template>
            <first_frame> N  V  L  I  E  A  S  I  Y  K  S  G  E  C  *  D  G  V  Q  E  M  E  K  L  D  T  D  T  S  F  L  A  N  E  A  G  R  F  I  P  A  S  M  V  V  S  F  W  S  C  K  R  W  L  L  F  R  R  N  T  C  I  *  C  F  L  Q  P  M  A  Q  N  E  F  *  S  S  E  R  E  V  F  I  L  C  C  W  Y  P  *  *  C  L  R  R  W  R  L  F  *  H  C  *  L  W  E  G  *  *  E  L  I  Q  D  T  *  K  R  A  R  F  *  S  L  D  E  N  V  A  *  S  C  T  N  E  A  C  K  I  I  P  Y  L  R  Y  L  *  D  Q  F  R  L  F  N  Y  *  E  S  T  N  S  R  R  Q  K  I  L  P  S  K  S  W  W  C  V  *  C  L  *  R  S  S  *  T  F  S  E  T  P  I  S  P  F  A  G  *  E  R  G  Y  I  F  A  Q  C  E  T  I  Q  V  C  Q  T  K  K  R  T  F  K  *  R  S  K  T  L  S  L  D  C  C  R  R  S  R  L  L  G  *  A  S  G  F  W  G  N  L  *  F  H  V  K  *  M  D  R  D  P  E  A  S  C  R  F  W  N  S  L  F  R  G  C  V  Q  W  V  V  L  C  L  F  R  K  *  *  A  S  S  I  *  R  *  E  G  L  L  G  *  N  P  N  *  S  I  P  S  P  S  S  *  I  P  S  *  T  Y  L  L  Q  *  S  A  I  H  A  L  C  L  L  V  *  R  G  R  S  D  W  Q  E  K  Q  S  S  K  E  T  V  G  A  R  S  Y  A  S  N  L  E  R  S  F  N  P  S  R  C  P  N  G  L  E  C  C  I  Y  S  *  *  K  L  Y  I  W  S  R  N  V  Q  N  I  R  A  G  A  R  L  L  D  R  W  R  C  N  *  C  W  N  K  L  E  P  Y  L  K  E  P  S  R  A  R  I  G  C  C  F  L  L  D  K  I  H  G  S  S  A  F  V  T  D  Q  E  L  Q  L  V  T  I  Y  V  Q  S  F  F  L  S  P  L  F  F  C  C  G  R  L  M  M  F  N  L  N  L  Y  S  I  C  F  Y  *  C  Y  A  G  H  S  I  V  L  *  F  V  F  *  A  V  K  *  *  T  L  V  F   </first_frame>
            <second_frame>  M  C  L  L  R  L  P  F  I  S  L  V  N  A  R  M  V  C  K  K  W  R  N  L  T  L  T  P  R  F  W  R  M  R  Q  E  G  S  F  Q  R  P  W  L  F  L  F  G  V  V  K  D  G  C  C  S  A  E  I  H  A  F  D  V  S  F  N  Q  W  H  K  M  N  S  E  V  L  K  G  R  F  L  F  S  V  A  G  I  H  D  D  V  Y  V  V  G  G  C  S  S  I  A  N  F  G  K  V  D  K  S  S  F  K  T  H  K  S  V  L  A  F  S  P  L  M  R  M  W  R  K  A  A  P  M  K  H  A  R  S  S  P  I  L  G  T  Y  E  I  S  S  D  C  L  I  I  R  N  Q  Q  T  R  G  D  R  R  F  Y  R  P  R  V  G  G  V  S  D  V  Y  E  D  P  H  R  L  S  V  R  R  Q  F  R  H  S  L  D  E  N  E  V  T  F  L  P  N  V  K  P  Y  K  F  V  K  Q  K  S  E  H  S  N  K  D  Q  R  R  F  L  L  I  A  V  G  G  L  G  C  W  D  E  P  L  D  S  G  E  I  Y  D  S  M  S  N  K  W  T  E  I  Q  R  L  P  V  D  F  G  I  A  C  S  G  V  V  C  N  G  L  F  Y  V  Y  S  E  S  D  K  L  A  A  Y  D  V  E  K  G  Y  W  V  R  I  Q  T  S  P  F  P  P  R  V  H  E  Y  H  P  K  L  I  C  C  N  S  R  L  F  M  L  S  V  S  W  C  E  G  E  G  Q  I  G  R  R  N  K  A  V  R  K  L  W  E  L  D  L  M  P  L  T  W  R  E  V  S  I  H  P  D  A  P  M  D  W  N  A  A  F  I  A  D  K  N  S  I  F  G  V  E  M  F  K  I  F  G  Q  V  L  D  F  L  T  V  G  D  V  T  D  A  G  I  N  W  S  H  I  S  R  N  R  L  A  Q  E  L  D  A  A  S  C  L  T  K  S  M  A  V  V  H  L  *  P  I  K  N  S  N  *  S  Q  Y  M  C  S  H  F  F  S  L  L  Y  S  F  V  V  D  V  *  *  C  L  T  *  I  Y  I  P  F  V  S  I  D  V  M  Q  V  I  Q  L  F  C  N  L  S  F  E  Q  *  N  N  K  L  W  F  L  </second_frame>
            <third_frame>   C  A  Y  *  G  F  H  L  *  V  W  *  M  L  G  W  C  A  R  N  G  E  T  *  H  *  H  L  V  S  G  E  *  G  R  K  V  H  S  S  V  H  G  C  F  F  L  E  L  *  K  M  V  V  V  P  Q  K  Y  M  H  L  M  F  P  S  T  N  G  T  K  *  I  L  K  F  *  K  G  G  F  Y  S  L  L  L  V  S  M  M  M  F  T  S  L  E  V  V  L  A  L  L  T  L  G  R  L  I  R  A  H  S  R  H  I  K  A  C  S  L  L  V  P  *  *  E  C  G  V  K  L  H  Q  *  S  M  Q  D  H  P  L  S  *  V  L  M  R  S  V  Q  I  V  *  L  L  G  I  N  K  L  E  E  T  E  D  F  T  V  Q  E  L  V  V  C  L  M  F  M  K  I  L  I  D  F  Q  *  D  A  N  F  A  I  R  W  M  R  T  R  L  H  F  C  P  M  *  N  H  T  S  L  S  N  K  K  A  N  I  Q  I  K  I  K  D  A  F  S  *  L  L  *  E  V  S  V  A  G  M  S  L  W  I  L  G  K  F  M  I  P  C  Q  I  N  G  Q  R  S  R  G  F  L  *  I  L  E  *  L  V  Q  G  L  C  A  M  G  C  F  M  F  I  Q  K  V  I  S  *  Q  H  M  T  L  R  R  A  I  G  L  E  S  K  L  V  H  S  L  P  E  F  M  N  T  I  L  N  L  F  A  A  I  V  G  Y  S  C  S  L  S  P  G  V  K  G  K  V  R  L  A  G  E  T  K  Q  *  G  N  C  G  S  *  I  L  C  L  *  L  G  E  K  F  Q  S  I  Q  M  P  Q  W  I  G  M  L  H  L  *  L  I  K  T  L  Y  L  E  S  K  C  S  K  Y  S  G  R  C  *  T  S  *  P  L  E  M  *  L  M  L  E  *  T  G  A  I  S  Q  G  T  V  S  R  K  N  W  M  L  L  L  A  *  Q  N  P  W  Q  *  C  I  C  N  R  S  R  T  P  T  S  H  N  I  C  A  V  I  F  S  L  S  F  I  L  L  L  W  T  F  D  D  V  *  L  K  S  I  F  H  L  F  L  L  M  L  C  R  S  F  N  C  S  V  I  C  L  L  S  S  E  I  I  N  S  G  F  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15734" stop="14430"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1302</number_coding_nucleotides>
                  <number_encoded_amino_acids>434</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MCLLRLPFISLVNARMVCKKWRNLTLTPRFWRMRQEGSFQRPWLFLFGVVKDGCCSAEIHAFDVSFNQWHKMNSEVLKGRFLFSVAGIHDDVYVVGGCSSIANFGKVDKSSFKTHKSVLAFSPLMRMWRKAAPMKHARSSPILGTYEISSDCLIIRNQQTRGDRRFYRPRVGGVSDVYEDPHRLSVRRQFRHSLDENEVTFLPNVKPYKFVKQKSEHSNKDQRRFLLIAVGGLGCWDEPLDSGEIYDSMSNKWTEIQRLPVDFGIACSGVVCNGLFYVYSESDKLAAYDVEKGYWVRIQTSPFPPRVHEYHPKLICCNSRLFMLSVSWCEGEGQIGRRNKAVRKLWELDLMPLTWREVSIHPDAPMDWNAAFIADKNSIFGVEMFKIFGQVLDFLTVGDVTDAGINWSHISRNRLAQELDAASCLTKSMAVVHL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="17442" PGL_stop="15838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="17442" e_stop="17172"/>
            <exon e_start="16178" e_stop="15838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.998" e_score="0.993"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="17442" e_stop="17172" e_length="271"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.998">
            <gDNA_intron_boundary i_start="17171" i_stop="16179" i_length="993"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="16178" e_stop="15838" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="17442" stop="17172"/>
              <exon start="16178" stop="15838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331237" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACTTGTAATGATAATTAGGTTCTTACCTATTTTGATTACAATTTGTGGGGATTCCTTTTTAACATTCTTTCACATGAGGACCATTTCATCTTTCTGTTGTTGATCCATTCTTGCTTCACTCAGCTTAAAGATGCTTTCTTTTTTTGATATGACAACAAGATCTCATATGGGGTTCTGATTTTTTTTTCTTTTTCTAAAAAAAAAATGAATCTTGATTCTTGATTGTGGATCCAAATGGTCTATGGAGCTCAAATGACTTGATTAAAGAG : GATAATAAGATGACATCAGAAAGATTTACAGGAGAAGAATCTCTTCAACAAGATTTGGAGTCTTTAAGCGTGTCTAAAAGGTTAGTCAGAAGTGTGAGCCAAAAGTTGAAAAAGAAGAACCTTAGAAGTGGAGGAGAAGAAGAGGATGACAGCAAGGGCATTTCCTTGAGATGTCTAACACTATATGGCAGAGGGGGTGGTTGCAAAGTGGGTGCTGACACTGGTGACGACCTAGGGGATTCATGCGGTAGAAGAAGATCAAATGCAAGTGAGGAAGGCAAAGGATATAACCCGATATGTGGAAATGAAGAAACGTCAGTAGATTGCTTCTCTTATGGGAT</gDNA_template>
            <first_frame> L  L  V  M  I  I  R  F  L  P  I  L  I  T  I  C  G  D  S  F  L  T  F  F  H  M  R  T  I  S  S  F  C  C  *  S  I  L  A  S  L  S  L  K  M  L  S  F  F  D  M  T  T  R  S  H  M  G  F  *  F  F  F  L  F  L  K  K  K  *  I  L  I  L  D  C  G  S  K  W  S  M  E  L  K  *  L  D  *  R   : G  *  *  D  D  I  R  K  I  Y  R  R  R  I  S  S  T  R  F  G  V  F  K  R  V  *  K  V  S  Q  K  C  E  P  K  V  E  K  E  E  P  *  K  W  R  R  R  R  G  *  Q  Q  G  H  F  L  E  M  S  N  T  I  W  Q  R  G  W  L  Q  S  G  C  *  H  W  *  R  P  R  G  F  M  R  *  K  K  I  K  C  K  *  G  R  Q  R  I  *  P  D  M  W  K  *  R  N  V  S  R  L  L  L  L  W  D </first_frame>
            <second_frame>  Y  L  *  *  *  L  G  S  Y  L  F  *  L  Q  F  V  G  I  P  F  *  H  S  F  T  *  G  P  F  H  L  S  V  V  D  P  F  L  L  H  S  A  *  R  C  F  L  F  L  I  *  Q  Q  D  L  I  W  G  S  D  F  F  F  F  F  *  K  K  N  E  S  *  F  L  I  V  D  P  N  G  L  W  S  S  N  D  L  I  K  E  :  D  N  K  M  T  S  E  R  F  T  G  E  E  S  L  Q  Q  D  L  E  S  L  S  V  S  K  R  L  V  R  S  V  S  Q  K  L  K  K  K  N  L  R  S  G  G  E  E  E  D  D  S  K  G  I  S  L  R  C  L  T  L  Y  G  R  G  G  G  C  K  V  G  A  D  T  G  D  D  L  G  D  S  C  G  R  R  R  S  N  A  S  E  E  G  K  G  Y  N  P  I  C  G  N  E  E  T  S  V  D  C  F  S  Y  G   </second_frame>
            <third_frame>   T  C  N  D  N  *  V  L  T  Y  F  D  Y  N  L  W  G  F  L  F  N  I  L  S  H  E  D  H  F  I  F  L  L  L  I  H  S  C  F  T  Q  L  K  D  A  F  F  F  *  Y  D  N  K  I  S  Y  G  V  L  I  F  F  S  F  S  K  K  K  M  N  L  D  S  *  L  W  I  Q  M  V  Y  G  A  Q  M  T  *  L  K  R :   I  I  R  *  H  Q  K  D  L  Q  E  K  N  L  F  N  K  I  W  S  L  *  A  C  L  K  G  *  S  E  V  *  A  K  S  *  K  R  R  T  L  E  V  E  E  K  K  R  M  T  A  R  A  F  P  *  D  V  *  H  Y  M  A  E  G  V  V  A  K  W  V  L  T  L  V  T  T  *  G  I  H  A  V  E  E  D  Q  M  Q  V  R  K  A  K  D  I  T  R  Y  V  E  M  K  K  R  Q  *  I  A  S  L  M  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="17225" stop="17172"/>
                    <exon start="16178" stop="15840"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLIVDPNGLWSSNDLIKEDNKMTSERFTGEESLQQDLESLSVSKRLVRSVSQKLKKKNLRSGGEEEDDSKGISLRCLTLYGRGGGCKVGADTGDDLGDSCGRRRSNASEEGKGYNPICGNEETSVDCFSYG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19695" PGL_stop="21238"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19695" e_stop="19824"/>
            <exon e_start="20098" e_stop="20124"/>
            <exon e_start="20938" e_stop="21238"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.963" e_score="0.977"/>
          <exon-intron don_prob="0.995" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="19695" e_stop="19824" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.963">
            <gDNA_intron_boundary i_start="19825" i_stop="20097" i_length="273"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20098" e_stop="20124" e_length="27"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.992">
            <gDNA_intron_boundary i_start="20125" i_stop="20937" i_length="813"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20938" e_stop="21238" e_length="301"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19695" stop="19824"/>
              <exon start="20098" stop="20124"/>
              <exon start="20938" stop="21238"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342819" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAATCGGGCAAATGGCGATTAAGCTGTATACGAGATCTATTGTTTTGATTGTTGTTATTGCTTTCTTATCGGTTTTGCCAGCTACGCTTTGCATCGAAGATAAATGTTCTGCTTGTTCCGCCATTGCT : GAGGAGCTCGAGCATGGACTATTGAAA : GAAAAGCCAAGAAACCATTTAGACATGAGACATCGCCTGGATTCTAAAGGTCAGCGTGAAGGGAAACTTATTGATTACAGGTCAAATATTAATGATCACCTTATTGATTAATAAGGTCTTTGCTAAAATCAATTCCTAATTGCTTTATTCTTTTACTTTTTCTTACAACTTCAAAATCTGTTACCCAGTTGTATATAAGAACTAACCTAGGTCACAGTTCAAAAATATTTCTCTATATCCCATCAACTTTCAGGTTGAAGAGCTCATTGATCTATCTGCTGTGTTGTTCGCTCATACCACA</gDNA_template>
            <first_frame> R  N  R  A  N  G  D  *  A  V  Y  E  I  Y  C  F  D  C  C  Y  C  F  L  I  G  F  A  S  Y  A  L  H  R  R  *  M  F  C  L  F  R  H  C   : *  G  A  R  A  W  T  I  E   : R  K  A  K  K  P  F  R  H  E  T  S  P  G  F  *  R  S  A  *  R  E  T  Y  *  L  Q  V  K  Y  *  *  S  P  Y  *  L  I  R  S  L  L  K  S  I  P  N  C  F  I  L  L  L  F  L  T  T  S  K  S  V  T  Q  L  Y  I  R  T  N  L  G  H  S  S  K  I  F  L  Y  I  P  S  T  F  R  L  K  S  S  L  I  Y  L  L  C  C  S  L  I  P   </first_frame>
            <second_frame>  E  I  G  Q  M  A  I  K  L  Y  T  R  S  I  V  L  I  V  V  I  A  F  L  S  V  L  P  A  T  L  C  I  E  D  K  C  S  A  C  S  A  I  A  :  E  E  L  E  H  G  L  L  K  :  E  K  P  R  N  H  L  D  M  R  H  R  L  D  S  K  G  Q  R  E  G  K  L  I  D  Y  R  S  N  I  N  D  H  L  I  D  *  *  G  L  C  *  N  Q  F  L  I  A  L  F  F  Y  F  F  L  Q  L  Q  N  L  L  P  S  C  I  *  E  L  T  *  V  T  V  Q  K  Y  F  S  I  S  H  Q  L  S  G  *  R  A  H  *  S  I  C  C  V  V  R  S  Y  H  </second_frame>
            <third_frame>   K  S  G  K  W  R  L  S  C  I  R  D  L  L  F  *  L  L  L  L  L  S  Y  R  F  C  Q  L  R  F  A  S  K  I  N  V  L  L  V  P  P  L  L :   R  S  S  S  M  D  Y  *  K :   K  S  Q  E  T  I  *  T  *  D  I  A  W  I  L  K  V  S  V  K  G  N  L  L  I  T  G  Q  I  L  M  I  T  L  L  I  N  K  V  F  A  K  I  N  S  *  L  L  Y  S  F  T  F  S  Y  N  F  K  I  C  Y  P  V  V  Y  K  N  *  P  R  S  Q  F  K  N  I  S  L  Y  P  I  N  F  Q  V  E  E  L  I  D  L  S  A  V  L  F  A  H  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19696" stop="19824"/>
                    <exon start="20098" stop="20124"/>
                    <exon start="20938" stop="21048"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EIGQMAIKLYTRSIVLIVVIAFLSVLPATLCIEDKCSACSAIAEELEHGLLKEKPRNHLDMRHRLDSKGQREGKLIDYRSNINDHLID*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21045" stop="21236"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRSLLKSIPNCFILLLFLTTSKSVTQLYIRTNLGHSSKIFLYIPSTFRLKSSLIYLLCCSLIP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="23610" PGL_stop="23780"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23610" e_stop="23780"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="23610" e_stop="23780" e_length="171"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23610" stop="23780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U329494" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTCCATAGAAGTATAAACAGTTTGTTACGTCCTCATATTTCTTCTGATATTTTTAACTTAATACAACATACATTTGTATGTCCTTCCCTCTTTTTTATTGGACCATGTATCAGTCATCCCATGTTGTACTCAAGATCAACTAATTTTATCGATGAACAATATTTACTCTC</gDNA_template>
            <first_frame> F  P  *  K  Y  K  Q  F  V  T  S  S  Y  F  F  *  Y  F  *  L  N  T  T  Y  I  C  M  S  F  P  L  F  Y  W  T  M  Y  Q  S  S  H  V  V  L  K  I  N  *  F  Y  R  *  T  I  F  T  L </first_frame>
            <second_frame>  F  H  R  S  I  N  S  L  L  R  P  H  I  S  S  D  I  F  N  L  I  Q  H  T  F  V  C  P  S  L  F  F  I  G  P  C  I  S  H  P  M  L  Y  S  R  S  T  N  F  I  D  E  Q  Y  L  L   </second_frame>
            <third_frame>   S  I  E  V  *  T  V  C  Y  V  L  I  F  L  L  I  F  L  T  *  Y  N  I  H  L  Y  V  L  P  S  F  L  L  D  H  V  S  V  I  P  C  C  T  Q  D  Q  L  I  L  S  M  N  N  I  Y  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="29231" PGL_stop="24676"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="29231" e_stop="29083"/>
            <exon e_start="28461" e_stop="28210"/>
            <exon e_start="27195" e_stop="27001"/>
            <exon e_start="25935" e_stop="25730"/>
            <exon e_start="25108" e_stop="24676"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.162" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.928" e_score="1.000"/>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="29231" e_stop="29083" e_length="149"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.162">
            <gDNA_intron_boundary i_start="29082" i_stop="28462" i_length="621"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="28461" e_stop="28210" e_length="252"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.928">
            <gDNA_intron_boundary i_start="28209" i_stop="27196" i_length="1014"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27195" e_stop="27001" e_length="195"/>
          </exon>
          <intron i_serial="3" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="27000" i_stop="25936" i_length="1065"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25935" e_stop="25730" e_length="206"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25729" i_stop="25109" i_length="621"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25108" e_stop="24676" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29231" stop="29083"/>
              <exon start="28461" stop="28210"/>
              <exon start="27195" stop="27001"/>
              <exon start="25935" stop="25730"/>
              <exon start="25108" stop="24676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322466" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGCCTTTATTTTCTCAGTTGGATTTAGGGTCTCCATTTTTAGTAATTTCCATTCTTGGTTTCACCCCCTTTACTTCCCAAAAAAGGCTAATCATCTGTGACTTCCACCAAAATTTCATCTTTTGGTGTCCGCTTCAAATCATTCTG : CTTTCCGTGGATAAGAATCTCTGAGGCTATTGAATTTATGCTCTGGGAATGCATATGGCTGCATATACAGATTTTTCACCACCATTTGCTATAGTAGAAGGGAGTTACAGTAAGGAGAATACATCTGCTGTTAAAGATGAATTACTTGAGGAATCAAATGAAATAAAGACAACAAGTGATAAGCCACTACGAGATCCTTCTGTTGTACAGTATTCAGTGAACTCTACTGCACTTGTAGGAGACGCTGATTTA : GATTTTGAAATAACTGAGAAGGGTTTCCAACACCCTTCTGAGGGACAATCAAACTTTGAACCAATATTTCGTTCTGGAAGTTGTGCTGAGAAAGGACCCAAACAGTACATGGAGGATGAACATATCTGTATAGATGATCTAATCATACATGTTAATGAAATTGCAGGTTCCACTTCCCCTGCAGCATTTTATGGG : GTCTTTGATGGCCATGGGGGTACTGATGCAGCATTATTTGTGAGGAATAATATTCTCAAGTTCATAATGGAGGACCCCTGTTTTCCCATGTGTTTAGAGAAGGCACTCAAGAATGCTTTTCTGAAAGCTGACTATGCTTTTGCCGACGATAGTTCTATTGACATATACTCTGGCACCACAGCATTGACAGCTCTAATGTTTGGAAG : AAACATGATCGTTGCTAATGCAGGAGATTGTCGTGCTGTGCTAGGGAAACGAGGTAAAGCCATTGAGTTGTCTAAGGACCACAAACCAAATAGCGCATCTGAAAGACATCGAATAGAAAAACTTGGAGGAGTCATATATGACGGATACTTAAACGGACAGTTATCTATAGCACGTGCCTTGGGGGATTGGCACATGAAAGGCCCAAAAGGTTCTGCCTACCCCTTGAGTGCAGAGCCGGAGTTGCAGGAAACATTGTTGACCGAGGATGATGAGTTCCTAATCATGGGTTGCGATGGTCTATGGGATGTTATGAGCAGCCAATGTGCTGTTACGATGGCCCGGAAAGAACTCATGCTACATAATGACCCAGAAAGATGTTCAAGAGAACTGGTAAGGGAAGCCCTCAAGCGCAACACATGTGATAACTTAACA</gDNA_template>
            <first_frame> L  C  L  Y  F  L  S  W  I  *  G  L  H  F  *  *  F  P  F  L  V  S  P  P  L  L  P  K  K  G  *  S  S  V  T  S  T  K  I  S  S  F  G  V  R  F  K  S  F  C :   F  P  W  I  R  I  S  E  A  I  E  F  M  L  W  E  C  I  W  L  H  I  Q  I  F  H  H  H  L  L  *  *  K  G  V  T  V  R  R  I  H  L  L  L  K  M  N  Y  L  R  N  Q  M  K  *  R  Q  Q  V  I  S  H  Y  E  I  L  L  L  Y  S  I  Q  *  T  L  L  H  L  *  E  T  L  I  * :   I  L  K  *  L  R  R  V  S  N  T  L  L  R  D  N  Q  T  L  N  Q  Y  F  V  L  E  V  V  L  R  K  D  P  N  S  T  W  R  M  N  I  S  V  *  M  I  *  S  Y  M  L  M  K  L  Q  V  P  L  P  L  Q  H  F  M  G :   S  L  M  A  M  G  V  L  M  Q  H  Y  L  *  G  I  I  F  S  S  S  *  W  R  T  P  V  F  P  C  V  *  R  R  H  S  R  M  L  F  *  K  L  T  M  L  L  P  T  I  V  L  L  T  Y  T  L  A  P  Q  H  *  Q  L  *  C  L  E   : E  T  *  S  L  L  M  Q  E  I  V  V  L  C  *  G  N  E  V  K  P  L  S  C  L  R  T  T  N  Q  I  A  H  L  K  D  I  E  *  K  N  L  E  E  S  Y  M  T  D  T  *  T  D  S  Y  L  *  H  V  P  W  G  I  G  T  *  K  A  Q  K  V  L  P  T  P  *  V  Q  S  R  S  C  R  K  H  C  *  P  R  M  M  S  S  *  S  W  V  A  M  V  Y  G  M  L  *  A  A  N  V  L  L  R  W  P  G  K  N  S  C  Y  I  M  T  Q  K  D  V  Q  E  N  W  *  G  K  P  S  S  A  T  H  V  I  T  *   </first_frame>
            <second_frame>  C  A  F  I  F  S  V  G  F  R  V  S  I  F  S  N  F  H  S  W  F  H  P  L  Y  F  P  K  K  A  N  H  L  *  L  P  P  K  F  H  L  L  V  S  A  S  N  H  S   : A  F  R  G  *  E  S  L  R  L  L  N  L  C  S  G  N  A  Y  G  C  I  Y  R  F  F  T  T  I  C  Y  S  R  R  E  L  Q  *  G  E  Y  I  C  C  *  R  *  I  T  *  G  I  K  *  N  K  D  N  K  *  *  A  T  T  R  S  F  C  C  T  V  F  S  E  L  Y  C  T  C  R  R  R  *  F   : R  F  *  N  N  *  E  G  F  P  T  P  F  *  G  T  I  K  L  *  T  N  I  S  F  W  K  L  C  *  E  R  T  Q  T  V  H  G  G  *  T  Y  L  Y  R  *  S  N  H  T  C  *  *  N  C  R  F  H  F  P  C  S  I  L  W   : G  L  *  W  P  W  G  Y  *  C  S  I  I  C  E  E  *  Y  S  Q  V  H  N  G  G  P  L  F  S  H  V  F  R  E  G  T  Q  E  C  F  S  E  S  *  L  C  F  C  R  R  *  F  Y  *  H  I  L  W  H  H  S  I  D  S  S  N  V  W  K  :  K  H  D  R  C  *  C  R  R  L  S  C  C  A  R  E  T  R  *  S  H  *  V  V  *  G  P  Q  T  K  *  R  I  *  K  T  S  N  R  K  T  W  R  S  H  I  *  R  I  L  K  R  T  V  I  Y  S  T  C  L  G  G  L  A  H  E  R  P  K  R  F  C  L  P  L  E  C  R  A  G  V  A  G  N  I  V  D  R  G  *  *  V  P  N  H  G  L  R  W  S  M  G  C  Y  E  Q  P  M  C  C  Y  D  G  P  E  R  T  H  A  T  *  *  P  R  K  M  F  K  R  T  G  K  G  S  P  Q  A  Q  H  M  *  *  L  N  </second_frame>
            <third_frame>   V  P  L  F  S  Q  L  D  L  G  S  P  F  L  V  I  S  I  L  G  F  T  P  F  T  S  Q  K  R  L  I  I  C  D  F  H  Q  N  F  I  F  W  C  P  L  Q  I  I  L  :  L  S  V  D  K  N  L  *  G  Y  *  I  Y  A  L  G  M  H  M  A  A  Y  T  D  F  S  P  P  F  A  I  V  E  G  S  Y  S  K  E  N  T  S  A  V  K  D  E  L  L  E  E  S  N  E  I  K  T  T  S  D  K  P  L  R  D  P  S  V  V  Q  Y  S  V  N  S  T  A  L  V  G  D  A  D  L  :  D  F  E  I  T  E  K  G  F  Q  H  P  S  E  G  Q  S  N  F  E  P  I  F  R  S  G  S  C  A  E  K  G  P  K  Q  Y  M  E  D  E  H  I  C  I  D  D  L  I  I  H  V  N  E  I  A  G  S  T  S  P  A  A  F  Y  G  :  V  F  D  G  H  G  G  T  D  A  A  L  F  V  R  N  N  I  L  K  F  I  M  E  D  P  C  F  P  M  C  L  E  K  A  L  K  N  A  F  L  K  A  D  Y  A  F  A  D  D  S  S  I  D  I  Y  S  G  T  T  A  L  T  A  L  M  F  G  R :   N  M  I  V  A  N  A  G  D  C  R  A  V  L  G  K  R  G  K  A  I  E  L  S  K  D  H  K  P  N  S  A  S  E  R  H  R  I  E  K  L  G  G  V  I  Y  D  G  Y  L  N  G  Q  L  S  I  A  R  A  L  G  D  W  H  M  K  G  P  K  G  S  A  Y  P  L  S  A  E  P  E  L  Q  E  T  L  L  T  E  D  D  E  F  L  I  M  G  C  D  G  L  W  D  V  M  S  S  Q  C  A  V  T  M  A  R  K  E  L  M  L  H  N  D  P  E  R  C  S  R  E  L  V  R  E  A  L  K  R  N  T  C  D  N  L  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28428" stop="28210"/>
                    <exon start="27195" stop="27001"/>
                    <exon start="25935" stop="25730"/>
                    <exon start="25108" stop="24676"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1053</number_coding_nucleotides>
                  <number_encoded_amino_acids>351</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYALGMHMAAYTDFSPPFAIVEGSYSKENTSAVKDELLEESNEIKTTSDKPLRDPSVVQYSVNSTALVGDADLDFEITEKGFQHPSEGQSNFEPIFRSGSCAEKGPKQYMEDEHICIDDLIIHVNEIAGSTSPAAFYGVFDGHGGTDAALFVRNNILKFIMEDPCFPMCLEKALKNAFLKADYAFADDSSIDIYSGTTALTALMFGRNMIVANAGDCRAVLGKRGKAIELSKDHKPNSASERHRIEKLGGVIYDGYLNGQLSIARALGDWHMKGPKGSAYPLSAEPELQETLLTEDDEFLIMGCDGLWDVMSSQCAVTMARKELMLHNDPERCSRELVREALKRNTCDNLT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="32777" PGL_stop="33514"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32777" e_stop="33013"/>
            <exon e_start="33329" e_stop="33514"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32777" e_stop="33013" e_length="237"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="33014" i_stop="33328" i_length="315"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33329" e_stop="33514" e_length="186"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32777" stop="33013"/>
              <exon start="33329" stop="33514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342498" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTATAGTATGCTTTGGAGTGTGTTCAGACGGGTTGAGTAGGAATGGCACTTCAAGGCCTGCTGTTGTGAGTGTTGGAGCTATATTTACATTTGACTCTACAATTGGAAGAGCTGCCAAGATTGCAATTCAGGAGGCTGTGAAAGATGTTAATTCCAACTCTAGCATCCTCCAAGGAACCAAACTTGTTGTGCAGTTGCAAAATTCCAATTGCAGTGGGTTTCTTGGCATGGTTGGAG : CCTTGAAATTTATGGAGACTGATGTTGTTGCAGTAATAGGCCCACAATCTTCTGTAGTTGCCCATACCATATCCCATGTTGCCAATGAACTTCAAGTTCCTTTCTTATCATTTGCTGCTACTGATCCCACACTCTCCTCTCTTCAGTTCCCTTATTTTCTTAGGACAACTCAAAGTGATCTATACC</gDNA_template>
            <first_frame> V  *  Y  A  L  E  C  V  Q  T  G  *  V  G  M  A  L  Q  G  L  L  L  *  V  L  E  L  Y  L  H  L  T  L  Q  L  E  E  L  P  R  L  Q  F  R  R  L  *  K  M  L  I  P  T  L  A  S  S  K  E  P  N  L  L  C  S  C  K  I  P  I  A  V  G  F  L  A  W  L  E  :  P  *  N  L  W  R  L  M  L  L  Q  *  *  A  H  N  L  L  *  L  P  I  P  Y  P  M  L  P  M  N  F  K  F  L  S  Y  H  L  L  L  L  I  P  H  S  P  L  F  S  S  L  I  F  L  G  Q  L  K  V  I  Y  T </first_frame>
            <second_frame>  Y  S  M  L  W  S  V  F  R  R  V  E  *  E  W  H  F  K  A  C  C  C  E  C  W  S  Y  I  Y  I  *  L  Y  N  W  K  S  C  Q  D  C  N  S  G  G  C  E  R  C  *  F  Q  L  *  H  P  P  R  N  Q  T  C  C  A  V  A  K  F  Q  L  Q  W  V  S  W  H  G  W  S :   L  E  I  Y  G  D  *  C  C  C  S  N  R  P  T  I  F  C  S  C  P  Y  H  I  P  C  C  Q  *  T  S  S  S  F  L  I  I  C  C  Y  *  S  H  T  L  L  S  S  V  P  L  F  S  *  D  N  S  K  *  S  I   </second_frame>
            <third_frame>   I  V  C  F  G  V  C  S  D  G  L  S  R  N  G  T  S  R  P  A  V  V  S  V  G  A  I  F  T  F  D  S  T  I  G  R  A  A  K  I  A  I  Q  E  A  V  K  D  V  N  S  N  S  S  I  L  Q  G  T  K  L  V  V  Q  L  Q  N  S  N  C  S  G  F  L  G  M  V  G   : A  L  K  F  M  E  T  D  V  V  A  V  I  G  P  Q  S  S  V  V  A  H  T  I  S  H  V  A  N  E  L  Q  V  P  F  L  S  F  A  A  T  D  P  T  L  S  S  L  Q  F  P  Y  F  L  R  T  T  Q  S  D  L  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32779" stop="33013"/>
                    <exon start="33329" stop="33513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IVCFGVCSDGLSRNGTSRPAVVSVGAIFTFDSTIGRAAKIAIQEAVKDVNSNSSILQGTKLVVQLQNSNCSGFLGMVGALKFMETDVVAVIGPQSSVVAHTISHVANELQVPFLSFAATDPTLSSLQFPYFLRTTQSDLY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="36259" PGL_stop="36838"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36259" e_stop="36838"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36259" e_stop="36838" e_length="580"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36259" stop="36838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346929" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCATATGGCTCTTTGTCGTTTTGATAATAAATTCAAGTTACACAGCAAGTTTGACCTCCATCCTCACTGTGCAACAATTATATTCTCCTATTAAAGGTATTGAGAGCTTGAAAGAAACTGATGAACCAATTGGGTACCAAGTTGGTTCTTTTGCAGAAAGGTATTTGGAGGAAATTGGTATACCAAAATCCAGACTTGTTCCCCTTGGGTCACCGGAAGAATATGCTACAGCACTTCAACGTGGTCCTGCAAACGGGGGTGTAGCTGCAGTGGTGGATGAAAGACCATACGTTGAACTTTTCCTGTCAAACCAGTGCAAATTCAGGATTGTAGGTCAAGAGTTCACCAAAAGTGGGTGGGGTTTTGTAAGTTTCTCTATTCCTACAGTTTTTTTCTTTTTTCCTCATTCTGTGTGCCCTCCTGCCTTTTCTATTTCCTTAATCCTAATTCTGTAAGTACACCTTGGTTTATTTTGTTGACTAAAATCTTGATGTCCTGGACATCTTGGTAGGATTTTGTAGCATATCACTAAGCACACTTCTATTTCAAGCCGAGTATTTGTGTAAAAATCATTGACGTC</gDNA_template>
            <first_frame> S  Y  G  S  L  S  F  *  *  *  I  Q  V  T  Q  Q  V  *  P  P  S  S  L  C  N  N  Y  I  L  L  L  K  V  L  R  A  *  K  K  L  M  N  Q  L  G  T  K  L  V  L  L  Q  K  G  I  W  R  K  L  V  Y  Q  N  P  D  L  F  P  L  G  H  R  K  N  M  L  Q  H  F  N  V  V  L  Q  T  G  V  *  L  Q  W  W  M  K  D  H  T  L  N  F  S  C  Q  T  S  A  N  S  G  L  *  V  K  S  S  P  K  V  G  G  V  L  *  V  S  L  F  L  Q  F  F  S  F  F  L  I  L  C  A  L  L  P  F  L  F  P  *  S  *  F  C  K  Y  T  L  V  Y  F  V  D  *  N  L  D  V  L  D  I  L  V  G  F  C  S  I  S  L  S  T  L  L  F  Q  A  E  Y  L  C  K  N  H  *  R  </first_frame>
            <second_frame>  H  M  A  L  C  R  F  D  N  K  F  K  L  H  S  K  F  D  L  H  P  H  C  A  T  I  I  F  S  Y  *  R  Y  *  E  L  E  R  N  *  *  T  N  W  V  P  S  W  F  F  C  R  K  V  F  G  G  N  W  Y  T  K  I  Q  T  C  S  P  W  V  T  G  R  I  C  Y  S  T  S  T  W  S  C  K  R  G  C  S  C  S  G  G  *  K  T  I  R  *  T  F  P  V  K  P  V  Q  I  Q  D  C  R  S  R  V  H  Q  K  W  V  G  F  C  K  F  L  Y  S  Y  S  F  F  L  F  S  S  F  C  V  P  S  C  L  F  Y  F  L  N  P  N  S  V  S  T  P  W  F  I  L  L  T  K  I  L  M  S  W  T  S  W  *  D  F  V  A  Y  H  *  A  H  F  Y  F  K  P  S  I  C  V  K  I  I  D  V </second_frame>
            <third_frame>   I  W  L  F  V  V  L  I  I  N  S  S  Y  T  A  S  L  T  S  I  L  T  V  Q  Q  L  Y  S  P  I  K  G  I  E  S  L  K  E  T  D  E  P  I  G  Y  Q  V  G  S  F  A  E  R  Y  L  E  E  I  G  I  P  K  S  R  L  V  P  L  G  S  P  E  E  Y  A  T  A  L  Q  R  G  P  A  N  G  G  V  A  A  V  V  D  E  R  P  Y  V  E  L  F  L  S  N  Q  C  K  F  R  I  V  G  Q  E  F  T  K  S  G  W  G  F  V  S  F  S  I  P  T  V  F  F  F  F  P  H  S  V  C  P  P  A  F  S  I  S  L  I  L  I  L  *  V  H  L  G  L  F  C  *  L  K  S  *  C  P  G  H  L  G  R  I  L  *  H  I  T  K  H  T  S  I  S  S  R  V  F  V  *  K  S  L  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36261" stop="36713"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLKETDEPIGYQVGSFAERYLEEIGIPKSRLVPLGSPEEYATALQRGPANGGVAAVVDERPYVELFLSNQCKFRIVGQEFTKSGWGFVSFSIPTVFFFFPHSVCPPAFSISLILIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="36900" PGL_stop="37571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36900" e_stop="37571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="36900" e_stop="37571" e_length="672"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36900" stop="37571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327732" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGAAATCATGATGTTTTTCTCTGTCATTTTGTGCTTGTTATTCTGATTCAGGCATTTCCTCGGGACTCTCCGTTGGCAGTCGACTTGTCAACTGCAATTTTAACACTATCAGAGAATGGAGACCTCCAGCGGATACATGACAAGTGGTTAGCAAGAAGTGCATGCAGTTTAGACAATGCTGAGCTTGAATCAGATCGCCTTCACTTGAGAAGCTTTTCAGGCCTCTTTCTTATATGTGGGATTGCATGCTTTATTGCTCTCCTAATATATTTCATCCAGATTCTGCGTAAATTTTGCCGGACTTCCAACGCTGCAGTTGATTCGGATGGTCAGAATACTACTTCACGTTCCAAACGTCTTCAAACTTTGCTGTCAATTATTGATGAGAAATCAAATAGAGGCAGCAAGCGAAGGAAAATCGACAGATCAGTTTCTGATGACAACATAGAAAATGACTTGGGAAGGGATTCCAGGTGGATAGAAACACAGGTTCCTTCTCAAAATGAAATTCATTAGTTCAATTATGCCAGCTTACATTTCTTATAGGGTTCTTACCAAAGTTTCAATTTTGACAACATAGAATTGTTTATAAGATTCAGCTGTTAACTGTATATTAGCACAATTTTTACACAATCAATATCATTTAGTAGCTTCAACTCTGATACTTTTTC</gDNA_template>
            <first_frame> Q  K  S  *  C  F  S  L  S  F  C  A  C  Y  S  D  S  G  I  S  S  G  L  S  V  G  S  R  L  V  N  C  N  F  N  T  I  R  E  W  R  P  P  A  D  T  *  Q  V  V  S  K  K  C  M  Q  F  R  Q  C  *  A  *  I  R  S  P  S  L  E  K  L  F  R  P  L  S  Y  M  W  D  C  M  L  Y  C  S  P  N  I  F  H  P  D  S  A  *  I  L  P  D  F  Q  R  C  S  *  F  G  W  S  E  Y  Y  F  T  F  Q  T  S  S  N  F  A  V  N  Y  *  *  E  I  K  *  R  Q  Q  A  K  E  N  R  Q  I  S  F  *  *  Q  H  R  K  *  L  G  K  G  F  Q  V  D  R  N  T  G  S  F  S  K  *  N  S  L  V  Q  L  C  Q  L  T  F  L  I  G  F  L  P  K  F  Q  F  *  Q  H  R  I  V  Y  K  I  Q  L  L  T  V  Y  *  H  N  F  Y  T  I  N  I  I  *  *  L  Q  L  *  Y  F  F </first_frame>
            <second_frame>  R  N  H  D  V  F  L  C  H  F  V  L  V  I  L  I  Q  A  F  P  R  D  S  P  L  A  V  D  L  S  T  A  I  L  T  L  S  E  N  G  D  L  Q  R  I  H  D  K  W  L  A  R  S  A  C  S  L  D  N  A  E  L  E  S  D  R  L  H  L  R  S  F  S  G  L  F  L  I  C  G  I  A  C  F  I  A  L  L  I  Y  F  I  Q  I  L  R  K  F  C  R  T  S  N  A  A  V  D  S  D  G  Q  N  T  T  S  R  S  K  R  L  Q  T  L  L  S  I  I  D  E  K  S  N  R  G  S  K  R  R  K  I  D  R  S  V  S  D  D  N  I  E  N  D  L  G  R  D  S  R  W  I  E  T  Q  V  P  S  Q  N  E  I  H  *  F  N  Y  A  S  L  H  F  L  *  G  S  Y  Q  S  F  N  F  D  N  I  E  L  F  I  R  F  S  C  *  L  Y  I  S  T  I  F  T  Q  S  I  S  F  S  S  F  N  S  D  T  F   </second_frame>
            <third_frame>   E  I  M  M  F  F  S  V  I  L  C  L  L  F  *  F  R  H  F  L  G  T  L  R  W  Q  S  T  C  Q  L  Q  F  *  H  Y  Q  R  M  E  T  S  S  G  Y  M  T  S  G  *  Q  E  V  H  A  V  *  T  M  L  S  L  N  Q  I  A  F  T  *  E  A  F  Q  A  S  F  L  Y  V  G  L  H  A  L  L  L  S  *  Y  I  S  S  R  F  C  V  N  F  A  G  L  P  T  L  Q  L  I  R  M  V  R  I  L  L  H  V  P  N  V  F  K  L  C  C  Q  L  L  M  R  N  Q  I  E  A  A  S  E  G  K  S  T  D  Q  F  L  M  T  T  *  K  M  T  W  E  G  I  P  G  G  *  K  H  R  F  L  L  K  M  K  F  I  S  S  I  M  P  A  Y  I  S  Y  R  V  L  T  K  V  S  I  L  T  T  *  N  C  L  *  D  S  A  V  N  C  I  L  A  Q  F  L  H  N  Q  Y  H  L  V  A  S  T  L  I  L  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36901" stop="37416"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNHDVFLCHFVLVILIQAFPRDSPLAVDLSTAILTLSENGDLQRIHDKWLARSACSLDNAELESDRLHLRSFSGLFLICGIACFIALLIYFIQILRKFCRTSNAAVDSDGQNTTSRSKRLQTLLSIIDEKSNRGSKRRKIDRSVSDDNIENDLGRDSRWIETQVPSQNEIH*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="38496" PGL_stop="37825"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38496" e_stop="38480"/>
            <exon e_start="38339" e_stop="37825"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.941"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.941">
            <gDNA_exon_boundary e_start="38496" e_stop="38480" e_length="17"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="38479" i_stop="38340" i_length="140"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="38339" e_stop="37825" e_length="515"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38496" stop="38480"/>
              <exon start="38339" stop="37825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326082" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCAAATCCAGAGCTAAG : GGCCAAAAGCAGTAGAGGTATTGCATCATCCTTTCTTTTGGAATTCTGAGATGCGACTCTCATTCCTCCGAGACGCCAGTGATAGAGTGGAATTAGAGGATAGAGAAGATGGATCTGAACTTTTGGGAGCACTGGAAAGTGTTAAGACCGTGGCATTGGGTGGTCTGTGGAATGATAAAATGGATAGTGCATTTATCAATGACATTGGTCGCTACAGGCGTTACAAATACGATAGTGTCCGCGATTTGTTGCGTGTTATCAGAAATAAGTTAAACCATTACAGAGAGCTTTCAAAGGAAATACAGGGAATTCTTGGACAGGTTCCTGAAGGTTTTGAGAGCTATTTCTCCACCAGGTTTCCTAGACTTGTAATTGAGGTCTACAAAGTACTTCATACCTATTGTTTAGAGGAAGATATCTTTCAAAAATACTTCAAAGGCAATCAAAATTAGCTCAATACTATCTACATATTAAACCTATGTACATATTGTAATTTATAATTATAATAATTATGA</gDNA_template>
            <first_frame> P  N  P  E  L  R :   A  K  S  S  R  G  I  A  S  S  F  L  L  E  F  *  D  A  T  L  I  P  P  R  R  Q  *  *  S  G  I  R  G  *  R  R  W  I  *  T  F  G  S  T  G  K  C  *  D  R  G  I  G  W  S  V  E  *  *  N  G  *  C  I  Y  Q  *  H  W  S  L  Q  A  L  Q  I  R  *  C  P  R  F  V  A  C  Y  Q  K  *  V  K  P  L  Q  R  A  F  K  G  N  T  G  N  S  W  T  G  S  *  R  F  *  E  L  F  L  H  Q  V  S  *  T  C  N  *  G  L  Q  S  T  S  Y  L  L  F  R  G  R  Y  L  S  K  I  L  Q  R  Q  S  K  L  A  Q  Y  Y  L  H  I  K  P  M  Y  I  L  *  F  I  I  I  I  I  M  </first_frame>
            <second_frame>  Q  I  Q  S  *   : G  P  K  A  V  E  V  L  H  H  P  F  F  W  N  S  E  M  R  L  S  F  L  R  D  A  S  D  R  V  E  L  E  D  R  E  D  G  S  E  L  L  G  A  L  E  S  V  K  T  V  A  L  G  G  L  W  N  D  K  M  D  S  A  F  I  N  D  I  G  R  Y  R  R  Y  K  Y  D  S  V  R  D  L  L  R  V  I  R  N  K  L  N  H  Y  R  E  L  S  K  E  I  Q  G  I  L  G  Q  V  P  E  G  F  E  S  Y  F  S  T  R  F  P  R  L  V  I  E  V  Y  K  V  L  H  T  Y  C  L  E  E  D  I  F  Q  K  Y  F  K  G  N  Q  N  *  L  N  T  I  Y  I  L  N  L  C  T  Y  C  N  L  *  L  *  *  L  * </second_frame>
            <third_frame>   K  S  R  A  K  :  G  Q  K  Q  *  R  Y  C  I  I  L  S  F  G  I  L  R  C  D  S  H  S  S  E  T  P  V  I  E  W  N  *  R  I  E  K  M  D  L  N  F  W  E  H  W  K  V  L  R  P  W  H  W  V  V  C  G  M  I  K  W  I  V  H  L  S  M  T  L  V  A  T  G  V  T  N  T  I  V  S  A  I  C  C  V  L  S  E  I  S  *  T  I  T  E  S  F  Q  R  K  Y  R  E  F  L  D  R  F  L  K  V  L  R  A  I  S  P  P  G  F  L  D  L  *  L  R  S  T  K  Y  F  I  P  I  V  *  R  K  I  S  F  K  N  T  S  K  A  I  K  I  S  S  I  L  S  T  Y  *  T  Y  V  H  I  V  I  Y  N  Y  N  N  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38480" stop="37888"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>450</number_coding_nucleotides>
                  <number_encoded_amino_acids>150</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GPKAVEVLHHPFFWNSEMRLSFLRDASDRVELEDREDGSELLGALESVKTVALGGLWNDKMDSAFINDIGRYRRYKYDSVRDLLRVIRNKLNHYRELSKEIQGILGQVPEGFESYFSTRFPRLVIEVYKVLHTYCLEEDIFQKYFKGNQN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="40665" PGL_stop="38567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40665" e_stop="40497"/>
            <exon e_start="39267" e_stop="39095"/>
            <exon e_start="38726" e_stop="38567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.653" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40665" e_stop="40497" e_length="169"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.653">
            <gDNA_intron_boundary i_start="40496" i_stop="39268" i_length="1229"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39267" e_stop="39095" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="39094" i_stop="38727" i_length="368"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38726" e_stop="38567" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40665" stop="40497"/>
              <exon start="39267" stop="39095"/>
              <exon start="38726" stop="38567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATCATCAGTCACCTGCTCCTACCAAAAACAATTTTCTGGAGATGACCAGGATGCCGGTTGTTTAAGTGACTGCACTGTAAAAGTTCAATGGAAATCTGGAGACAAGGATGACTTCCCGTTATGGAAGCCCAGTGGATATCCTTCAGCTCACCTGTTAAAATTGATGAG : AGATATGGTTCATGGCCTTGCTCATTTGCATGAACTGGGAATTGTACACCGTGACTTGAAGCCTCAGAATATTCTTATAGTAAAAGAGAGATCTGTAAGTGCAAAGCTTTCAGATATGGGTATCAGCAAGCATCTTGCAGGGGACATGTCTTCATTAACCAAAAATTCCACTG : GCTCTGGGAGTTCAGGTTGGCAAGCACCTGAGCAACTTCGTCATGAACGGCAGACACGTGCTGTGGATTTATTCAGTTTAGGCTGTGTACTCTTTTTCTGCATAACCGGGGGAAAACATCCGTATGGGGATAGTTTTGAACGTGATGTAAATATAGTTAA</gDNA_template>
            <first_frame> Y  H  Q  S  P  A  P  T  K  N  N  F  L  E  M  T  R  M  P  V  V  *  V  T  A  L  *  K  F  N  G  N  L  E  T  R  M  T  S  R  Y  G  S  P  V  D  I  L  Q  L  T  C  *  N  *  *   : E  I  W  F  M  A  L  L  I  C  M  N  W  E  L  Y  T  V  T  *  S  L  R  I  F  L  *  *  K  R  D  L  *  V  Q  S  F  Q  I  W  V  S  A  S  I  L  Q  G  T  C  L  H  *  P  K  I  P  L  :  A  L  G  V  Q  V  G  K  H  L  S  N  F  V  M  N  G  R  H  V  L  W  I  Y  S  V  *  A  V  Y  S  F  S  A  *  P  G  E  N  I  R  M  G  I  V  L  N  V  M  *  I  *  L  </first_frame>
            <second_frame>  I  I  S  H  L  L  L  P  K  T  I  F  W  R  *  P  G  C  R  L  F  K  *  L  H  C  K  S  S  M  E  I  W  R  Q  G  *  L  P  V  M  E  A  Q  W  I  S  F  S  S  P  V  K  I  D  E  :  R  Y  G  S  W  P  C  S  F  A  *  T  G  N  C  T  P  *  L  E  A  S  E  Y  S  Y  S  K  R  E  I  C  K  C  K  A  F  R  Y  G  Y  Q  Q  A  S  C  R  G  H  V  F  I  N  Q  K  F  H  W :   L  W  E  F  R  L  A  S  T  *  A  T  S  S  *  T  A  D  T  C  C  G  F  I  Q  F  R  L  C  T  L  F  L  H  N  R  G  K  T  S  V  W  G  *  F  *  T  *  C  K  Y  S  * </second_frame>
            <third_frame>   S  S  V  T  C  S  Y  Q  K  Q  F  S  G  D  D  Q  D  A  G  C  L  S  D  C  T  V  K  V  Q  W  K  S  G  D  K  D  D  F  P  L  W  K  P  S  G  Y  P  S  A  H  L  L  K  L  M  R :   D  M  V  H  G  L  A  H  L  H  E  L  G  I  V  H  R  D  L  K  P  Q  N  I  L  I  V  K  E  R  S  V  S  A  K  L  S  D  M  G  I  S  K  H  L  A  G  D  M  S  S  L  T  K  N  S  T   : G  S  G  S  S  G  W  Q  A  P  E  Q  L  R  H  E  R  Q  T  R  A  V  D  L  F  S  L  G  C  V  L  F  F  C  I  T  G  G  K  H  P  Y  G  D  S  F  E  R  D  V  N  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40663" stop="40497"/>
                    <exon start="39267" stop="39095"/>
                    <exon start="38726" stop="38569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSVTCSYQKQFSGDDQDAGCLSDCTVKVQWKSGDKDDFPLWKPSGYPSAHLLKLMRDMVHGLAHLHELGIVHRDLKPQNILIVKERSVSAKLSDMGISKHLAGDMSSLTKNSTGSGSSGWQAPEQLRHERQTRAVDLFSLGCVLFFCITGGKHPYGDSFERDVNIV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="49231" PGL_stop="46295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="49231" e_stop="49054"/>
            <exon e_start="48870" e_stop="48763"/>
            <exon e_start="48401" e_stop="48240"/>
            <exon e_start="48143" e_stop="47976"/>
            <exon e_start="47621" e_stop="47461"/>
            <exon e_start="47376" e_stop="47315"/>
            <exon e_start="47233" e_stop="47184"/>
            <exon e_start="47078" e_stop="46672"/>
            <exon e_start="46596" e_stop="46295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.984" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.970" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.952" e_score="1.000"/>
          <exon-intron don_prob="0.982" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.903" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="49231" e_stop="49054" e_length="178"/>
          </exon>
          <intron i_serial="1" don_prob="0.984" acc_prob="0.996">
            <gDNA_intron_boundary i_start="49053" i_stop="48871" i_length="183"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="48870" e_stop="48763" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="48762" i_stop="48402" i_length="361"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48401" e_stop="48240" e_length="162"/>
          </exon>
          <intron i_serial="3" don_prob="0.962" acc_prob="0.995">
            <gDNA_intron_boundary i_start="48239" i_stop="48144" i_length="96"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48143" e_stop="47976" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.970">
            <gDNA_intron_boundary i_start="47975" i_stop="47622" i_length="354"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47621" e_stop="47461" e_length="161"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.952">
            <gDNA_intron_boundary i_start="47460" i_stop="47377" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="47376" e_stop="47315" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.982" acc_prob="0.996">
            <gDNA_intron_boundary i_start="47314" i_stop="47234" i_length="81"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="47233" e_stop="47184" e_length="50"/>
          </exon>
          <intron i_serial="7" don_prob="1.000" acc_prob="0.903">
            <gDNA_intron_boundary i_start="47183" i_stop="47079" i_length="105"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="47078" e_stop="46672" e_length="407"/>
          </exon>
          <intron i_serial="8" don_prob="0.975" acc_prob="0.999">
            <gDNA_intron_boundary i_start="46671" i_stop="46597" i_length="75"/>
          </intron>
          <exon e_serial="9" e_score="0.977">
            <gDNA_exon_boundary e_start="46596" e_stop="46295" e_length="302"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49231" stop="49054"/>
              <exon start="48870" stop="48763"/>
              <exon start="48401" stop="48240"/>
              <exon start="48143" stop="47976"/>
              <exon start="47621" stop="47461"/>
              <exon start="47376" stop="47315"/>
              <exon start="47233" stop="47184"/>
              <exon start="47078" stop="46672"/>
              <exon start="46596" stop="46295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312804" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGGAACAAACCATATTTTAAACCATATATACCAAAAAAGAAGTAGCTTTCCTCAAGATCATTTAGTTGCAGCCATGGCTTCTCATGCAGCTTTGGCTTCTTCACGAATTCCTACAAGCACAAGGCTTCCTTCCAATAAGAACTCCTACTCATTCCCCACACAATGTTTATCCAAG : AAATTTGAAGTAGCTGAATTTTCTGGTCTAAGATCAAGTGGATGTGTGACTTTTTCCAACAGAGAGTCTTCTTTCTTTGATGTTGTCTCTGCACAACTCACTCCAAAG : ACTACAGGATCAGCCCCGGCTAAGGGAGAAACTGTTGCTAAATTGAAGGTTGCTATCAACGGTTTTGGTAGAATTGGTAGGAATTTCCTCCGATGCTGGCATGGTCGCAAAGACTCACCACTTGATGTTGTGGTTGTCAATGACAGTGGCGGTGTCAAGAAC : GCATCTCACTTGCTAAAGTATGATTCAATGCTGGGAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG : GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG : CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG : GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG : AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCAGCTCAAGGGGAAGCTGAATGGCATTGCTCTCCGAGTGCCAACACCTAACGTCTCAGTCGTTGACCTTGTTGTCAACGTCGAGAAGAAAGGAATTACAGCTGAGGATGTGAATGCAGCATTCAGAAAGGCTGCTGATGGTCCACTGAAAGGCATATTAGATGTGTGTGATGCCCCTCTTGTTTCAGTTGACTTCCGATGCTCTGACGTTTCATCCACCATCGACTCCTCCTTGACCATGGTCATGGGAGATGATATGGTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGATACAG : CCAAAGAGTTGTGGACTTGGCTCATCTAGTAGCAAGCAAATGGCCAGGTGTTGCAGCACCAGGAAGTGGAGACCCATTGGATGAGTTCTGTGAGACAAATCCTTCTGATGAGGAATGCAAAGTCTATGAATAAGACATTTTTGTTATAATTTGAGAACAACAGTAGTTTTGTTATCTACATGTTTGATGTGTAAAACTGAGTGGGAAGTCCCATTAGCTTAAGAAAATAATATCACACTCGTATGAATTCTTTCTATATCGATTTAATCGAGATTGAGAATAAATTTGATGATCTCAATTCT</gDNA_template>
            <first_frame> G  G  N  K  P  Y  F  K  P  Y  I  P  K  K  K  *  L  S  S  R  S  F  S  C  S  H  G  F  S  C  S  F  G  F  F  T  N  S  Y  K  H  K  A  S  F  Q  *  E  L  L  L  I  P  H  T  M  F  I  Q   : E  I  *  S  S  *  I  F  W  S  K  I  K  W  M  C  D  F  F  Q  Q  R  V  F  F  L  *  C  C  L  C  T  T  H  S  K   : D  Y  R  I  S  P  G  *  G  R  N  C  C  *  I  E  G  C  Y  Q  R  F  W  *  N  W  *  E  F  P  P  M  L  A  W  S  Q  R  L  T  T  *  C  C  G  C  Q  *  Q  W  R  C  Q  E   : R  I  S  L  A  K  V  *  F  N  A  G  N  I  Q  S  *  C  Q  N  S  G  *  *  N  H  *  C  *  W  K  A  H  Q  G  S  F  *  Q  G  S  P  Q  A  S  L  G  *  T  W  H  *  H  C  Y  *   : G  N  W  C  V  C  *  W  S  R  C  R  E  A  H  P  S  W  C  Q  E  S  Y  H  H  C  T  S  K  R  C  *  H  S  N  L  C  C  W  S  E  R  A  R  L  L  S  *  D  C  *  H  H  K  :  Q  C  L  L  H  H  *  L  L  G  S  I  C  E  S  H  G  *  R  T  W :   N  C  E  G  Y  N  D  N  N  S  L  L  H  R  R  S   : E  A  S  R  C  F  T  P  *  L  K  E  S  E  S  S  S  I  E  H  C  P  N  Q  Y  W  C  S  Q  G  S  V  F  S  A  T  S  A  Q  G  E  A  E  W  H  C  S  P  S  A  N  T  *  R  L  S  R  *  P  C  C  Q  R  R  E  E  R  N  Y  S  *  G  C  E  C  S  I  Q  K  G  C  *  W  S  T  E  R  H  I  R  C  V  *  C  P  S  C  F  S  *  L  P  M  L  *  R  F  I  H  H  R  L  L  L  D  H  G  H  G  R  *  Y  G  Q  G  R  C  L  V  *  Q  R  V  G  I  Q  :  P  K  S  C  G  L  G  S  S  S  S  K  Q  M  A  R  C  C  S  T  R  K  W  R  P  I  G  *  V  L  *  D  K  S  F  *  *  G  M  Q  S  L  *  I  R  H  F  C  Y  N  L  R  T  T  V  V  L  L  S  T  C  L  M  C  K  T  E  W  E  V  P  L  A  *  E  N  N  I  T  L  V  *  I  L  S  I  S  I  *  S  R  L  R  I  N  L  M  I  S  I   </first_frame>
            <second_frame>  V  G  T  N  H  I  L  N  H  I  Y  Q  K  R  S  S  F  P  Q  D  H  L  V  A  A  M  A  S  H  A  A  L  A  S  S  R  I  P  T  S  T  R  L  P  S  N  K  N  S  Y  S  F  P  T  Q  C  L  S  K  :  K  F  E  V  A  E  F  S  G  L  R  S  S  G  C  V  T  F  S  N  R  E  S  S  F  F  D  V  V  S  A  Q  L  T  P  K  :  T  T  G  S  A  P  A  K  G  E  T  V  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  V  V  V  N  D  S  G  G  V  K  N  :  A  S  H  L  L  K  Y  D  S  M  L  G  T  F  K  A  D  V  K  I  V  D  N  E  T  I  S  V  D  G  K  H  I  K  V  V  S  S  R  D  P  L  K  L  P  W  A  E  L  G  I  D  I  V  I  E  :  G  T  G  V  F  V  D  G  P  G  A  G  K  H  I  Q  A  G  A  K  K  V  I  I  T  A  P  A  K  G  A  D  I  P  T  Y  V  V  G  V  N  E  Q  D  Y  S  H  E  I  A  N  I  I  S :   N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  M  D  E  E  L   : G  I  V  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  :  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  S  L  V  L  P  Q  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  N  V  E  K  K  G  I  T  A  E  D  V  N  A  A  F  R  K  A  A  D  G  P  L  K  G  I  L  D  V  C  D  A  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  I  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  V  A  W  Y  D  N  E  W  G  Y  S :   Q  R  V  V  D  L  A  H  L  V  A  S  K  W  P  G  V  A  A  P  G  S  G  D  P  L  D  E  F  C  E  T  N  P  S  D  E  E  C  K  V  Y  E  *  D  I  F  V  I  I  *  E  Q  Q  *  F  C  Y  L  H  V  *  C  V  K  L  S  G  K  S  H  *  L  K  K  I  I  S  H  S  Y  E  F  F  L  Y  R  F  N  R  D  *  E  *  I  *  *  S  Q  F  </second_frame>
            <third_frame>   W  E  Q  T  I  F  *  T  I  Y  T  K  K  E  V  A  F  L  K  I  I  *  L  Q  P  W  L  L  M  Q  L  W  L  L  H  E  F  L  Q  A  Q  G  F  L  P  I  R  T  P  T  H  S  P  H  N  V  Y  P  R :   N  L  K  *  L  N  F  L  V  *  D  Q  V  D  V  *  L  F  P  T  E  S  L  L  S  L  M  L  S  L  H  N  S  L  Q  R :   L  Q  D  Q  P  R  L  R  E  K  L  L  L  N  *  R  L  L  S  T  V  L  V  E  L  V  G  I  S  S  D  A  G  M  V  A  K  T  H  H  L  M  L  W  L  S  M  T  V  A  V  S  R  T :   H  L  T  C  *  S  M  I  Q  C  W  E  H  S  K  L  M  S  K  *  W  I  M  K  P  L  V  L  M  E  S  T  S  R  *  F  L  A  G  I  P  S  S  F  L  G  L  N  L  A  L  T  L  L  L  R :   E  L  V  C  L  L  M  V  Q  V  Q  G  S  T  S  K  L  V  P  R  K  L  S  S  L  H  Q  Q  K  V  L  T  F  Q  P  M  L  L  E  *  T  S  K  T  T  L  M  R  L  L  T  S  *   : A  M  P  L  A  P  L  T  A  W  L  H  L  *  K  S  W  M  K  N  L  :  E  L  *  R  V  Q  *  Q  Q  L  T  L  T  P  E  I  R :   G  F  S  M  L  H  T  V  T  *  G  E  R  E  Q  Q  H  *  T  L  S  Q  P  V  L  V  Q  P  R  Q  C  L  *  C  Y  L  S  S  R  G  S  *  M  A  L  L  S  E  C  Q  H  L  T  S  Q  S  L  T  L  L  S  T  S  R  R  K  E  L  Q  L  R  M  *  M  Q  H  S  E  R  L  L  M  V  H  *  K  A  Y  *  M  C  V  M  P  L  L  F  Q  L  T  S  D  A  L  T  F  H  P  P  S  T  P  P  *  P  W  S  W  E  M  I  W  S  R  S  L  L  G  M  T  T  S  G  D  T   : A  K  E  L  W  T  W  L  I  *  *  Q  A  N  G  Q  V  L  Q  H  Q  E  V  E  T  H  W  M  S  S  V  R  Q  I  L  L  M  R  N  A  K  S  M  N  K  T  F  L  L  *  F  E  N  N  S  S  F  V  I  Y  M  F  D  V  *  N  *  V  G  S  P  I  S  L  R  K  *  Y  H  T  R  M  N  S  F  Y  I  D  L  I  E  I  E  N  K  F  D  D  L  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49230" stop="49054"/>
                    <exon start="48870" stop="48763"/>
                    <exon start="48401" stop="48240"/>
                    <exon start="48143" stop="47976"/>
                    <exon start="47621" stop="47461"/>
                    <exon start="47376" stop="47315"/>
                    <exon start="47233" stop="47184"/>
                    <exon start="47078" stop="46672"/>
                    <exon start="46596" stop="46464"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1425</number_coding_nucleotides>
                  <number_encoded_amino_acids>475</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGTNHILNHIYQKRSSFPQDHLVAAMASHAALASSRIPTSTRLPSNKNSYSFPTQCLSKKFEVAEFSGLRSSGCVTFSNRESSFFDVVSAQLTPKTTGSAPAKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEIANIISNASCTTNCLAPFVKVMDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGITAEDVNAAFRKAADGPLKGILDVCDAPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGVAAPGSGDPLDEFCETNPSDEECKVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="53261" PGL_stop="49579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="53261" e_stop="53112"/>
            <exon e_start="51523" e_stop="51406"/>
            <exon e_start="51231" e_stop="51129"/>
            <exon e_start="50971" e_stop="50885"/>
            <exon e_start="50190" e_stop="49879"/>
            <exon e_start="49583" e_stop="49579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.922" e_score="0.987"/>
          <exon-intron don_prob="0.971" acc_prob="0.931" e_score="1.000"/>
          <exon-intron don_prob="0.987" acc_prob="0.788" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.600"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="53261" e_stop="53112" e_length="150"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.922">
            <gDNA_intron_boundary i_start="53111" i_stop="51524" i_length="1588"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="51523" e_stop="51406" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.971" acc_prob="0.931">
            <gDNA_intron_boundary i_start="51405" i_stop="51232" i_length="174"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="51231" e_stop="51129" e_length="103"/>
          </exon>
          <intron i_serial="3" don_prob="0.987" acc_prob="0.788">
            <gDNA_intron_boundary i_start="51128" i_stop="50972" i_length="157"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="50971" e_stop="50885" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="50884" i_stop="50191" i_length="694"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="50190" e_stop="49879" e_length="312"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.850">
            <gDNA_intron_boundary i_start="49878" i_stop="49584" i_length="295"/>
          </intron>
          <exon e_serial="6" e_score="0.600">
            <gDNA_exon_boundary e_start="49583" e_stop="49579" e_length="5"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="53261" stop="53112"/>
              <exon start="51523" stop="51406"/>
              <exon start="51231" stop="51129"/>
              <exon start="50971" stop="50885"/>
              <exon start="50190" stop="49879"/>
              <exon start="49583" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U318063" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAAAATATAAACGTACTATAACCCATTAATCACTTCTCTGTTGTAATCTTCTCCACAATCCAAATTTGTTTCACTGCAAAAATGACTGCTCTTTCAAATTCATTGATTTTATCCAAACCCAGAAGCCCTTCTCTCCATTTCTCCTCAG : GTTCTTGCTTGAAGTCACTGGACCAAAATGTTAGTGCTACCAAGTTGTCCTTCAGTCCAAGTCACGGAGGAAAATCATATTCTTCTAAAAGATCATTGATCATTCAAGCGTCATACAG : TGATGGTGGAAGGTCAAGCGGAAGCGGTGCTGGCATCTTTGTTGGTGGCTTTGTTCTGGGAGGAATAATTGTTGGCACTCTTGGATGTGTGTTTGCACCTCAG : ATCAGCAAGGCATTAGCTGGAGCTGATAAGAAGGACCTGATGAGAAAATTGCCCAAGTTTATATATGACGAAGACAAAGCATTAGAG : AAACAACGCAAGAAGCTTGCTGAAAAGATTGACCAGCTGAACTCGGCGATTGATGACATTTCTACCCAGTTGAGGTCAGATGACACACCAAATGGAGCTGCTGTGAACTCGGATGATGTTGAAGCTGTTGTATAAGAAACATTTCTATCTTCTTAGTATCAAGTCAGCTGAGGACATCGAGTATATGGGAATATTCCTAGTTCAGTTTTGATGTTTTTGGTATTCGCTACAATATGATATCCCAAAATGAGGAAACATTATGTGATTTTATATGCTGCTTCTGTTTTCTATTGACATGGAACTCTTTTAAAA : CAAAT</gDNA_template>
            <first_frame> G  K  I  *  T  Y  Y  N  P  L  I  T  S  L  L  *  S  S  P  Q  S  K  F  V  S  L  Q  K  *  L  L  F  Q  I  H  *  F  Y  P  N  P  E  A  L  L  S  I  S  P  Q  :  V  L  A  *  S  H  W  T  K  M  L  V  L  P  S  C  P  S  V  Q  V  T  E  E  N  H  I  L  L  K  D  H  *  S  F  K  R  H  T   : V  M  V  E  G  Q  A  E  A  V  L  A  S  L  L  V  A  L  F  W  E  E  *  L  L  A  L  L  D  V  C  L  H  L  R :   S  A  R  H  *  L  E  L  I  R  R  T  *  *  E  N  C  P  S  L  Y  M  T  K  T  K  H  *  R :   N  N  A  R  S  L  L  K  R  L  T  S  *  T  R  R  L  M  T  F  L  P  S  *  G  Q  M  T  H  Q  M  E  L  L  *  T  R  M  M  L  K  L  L  Y  K  K  H  F  Y  L  L  S  I  K  S  A  E  D  I  E  Y  M  G  I  F  L  V  Q  F  *  C  F  W  Y  S  L  Q  Y  D  I  P  K  *  G  N  I  M  *  F  Y  M  L  L  L  F  S  I  D  M  E  L  F  *  N :   K  </first_frame>
            <second_frame>  E  K  Y  K  R  T  I  T  H  *  S  L  L  C  C  N  L  L  H  N  P  N  L  F  H  C  K  N  D  C  S  F  K  F  I  D  F  I  Q  T  Q  K  P  F  S  P  F  L  L  R :   F  L  L  E  V  T  G  P  K  C  *  C  Y  Q  V  V  L  Q  S  K  S  R  R  K  I  I  F  F  *  K  I  I  D  H  S  S  V  I  Q  :  *  W  W  K  V  K  R  K  R  C  W  H  L  C  W  W  L  C  S  G  R  N  N  C  W  H  S  W  M  C  V  C  T  S   : D  Q  Q  G  I  S  W  S  *  *  E  G  P  D  E  K  I  A  Q  V  Y  I  *  R  R  Q  S  I  R   : E  T  T  Q  E  A  C  *  K  D  *  P  A  E  L  G  D  *  *  H  F  Y  P  V  E  V  R  *  H  T  K  W  S  C  C  E  L  G  *  C  *  S  C  C  I  R  N  I  S  I  F  L  V  S  S  Q  L  R  T  S  S  I  W  E  Y  S  *  F  S  F  D  V  F  G  I  R  Y  N  M  I  S  Q  N  E  E  T  L  C  D  F  I  C  C  F  C  F  L  L  T  W  N  S  F  K   : T  N </second_frame>
            <third_frame>   K  N  I  N  V  L  *  P  I  N  H  F  S  V  V  I  F  S  T  I  Q  I  C  F  T  A  K  M  T  A  L  S  N  S  L  I  L  S  K  P  R  S  P  S  L  H  F  S  S   : G  S  C  L  K  S  L  D  Q  N  V  S  A  T  K  L  S  F  S  P  S  H  G  G  K  S  Y  S  S  K  R  S  L  I  I  Q  A  S  Y  S :   D  G  G  R  S  S  G  S  G  A  G  I  F  V  G  G  F  V  L  G  G  I  I  V  G  T  L  G  C  V  F  A  P  Q  :  I  S  K  A  L  A  G  A  D  K  K  D  L  M  R  K  L  P  K  F  I  Y  D  E  D  K  A  L  E  :  K  Q  R  K  K  L  A  E  K  I  D  Q  L  N  S  A  I  D  D  I  S  T  Q  L  R  S  D  D  T  P  N  G  A  A  V  N  S  D  D  V  E  A  V  V  *  E  T  F  L  S  S  *  Y  Q  V  S  *  G  H  R  V  Y  G  N  I  P  S  S  V  L  M  F  L  V  F  A  T  I  *  Y  P  K  M  R  K  H  Y  V  I  L  Y  A  A  S  V  F  Y  *  H  G  T  L  L  K  :  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="53238" stop="53112"/>
                    <exon start="51523" stop="51406"/>
                    <exon start="51231" stop="51129"/>
                    <exon start="50971" stop="50885"/>
                    <exon start="50190" stop="50056"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>567</number_coding_nucleotides>
                  <number_encoded_amino_acids>189</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PINHFSVVIFSTIQICFTAKMTALSNSLILSKPRSPSLHFSSGSCLKSLDQNVSATKLSFSPSHGGKSYSSKRSLIIQASYSDGGRSSGSGAGIFVGGFVLGGIIVGTLGCVFAPQISKALAGADKKDLMRKLPKFIYDEDKALEKQRKKLAEKIDQLNSAIDDISTQLRSDDTPNGAAVNSDDVEAVV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="52809" e_stop="52178"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="52809" e_stop="52178" e_length="632"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52809" stop="52178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341150" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCACTGATTTAATATATCTTAGCTTCTAATACTAGTCTCTTGAGCTCCTTAGACTGTTGGTTTTGGATATTGTTAGAGTTCTACATTGGTTGGTGAGTGGGCAGTCCTCCCCTCCCGAGCTAGCTTTTGGGGTTGAATTTGCCTAAGGTGTTATATCTTTACACGGTATTAGTGTCAGGTCCATGCCCCTTTGAGTTCTCAACCATGCTTCAGTTAGGATGGGTGTGAGGGGTGTTAGAACACCAGATGTTTGCTAGTAACATGTGTGTGCTAGTAGTAAGCCAGTCTTAACATTGTAGCATGAACTTGTCAAATGTTTATCTGTTAGGATCCAGCGACCCGTGTTACTAAAGTTATGAGCTCTAGCATCCGAACAATGAGCCGTTTGGTGGTTACAACTACCATATCCATTTGTACTTCTATAAGTTTGATAGGGAGATGCCTAACTTCTTATACTTTCCCCTAGTTCACATATTCATGCATGAAATAGGCGTTTTCTGCAATTGGGTTATATTCTGCTTGGTGATAACGTGATTCCCCCTTTTTTTATTTGTCACACATTTCTTATTCAATTTTGTATATTTTGTTCAAGTGATAATTGTTGTTGTTTGTGATTATTATTATTATTATT</gDNA_template>
            <first_frame> F  T  D  L  I  Y  L  S  F  *  Y  *  S  L  E  L  L  R  L  L  V  L  D  I  V  R  V  L  H  W  L  V  S  G  Q  S  S  P  P  E  L  A  F  G  V  E  F  A  *  G  V  I  S  L  H  G  I  S  V  R  S  M  P  L  *  V  L  N  H  A  S  V  R  M  G  V  R  G  V  R  T  P  D  V  C  *  *  H  V  C  A  S  S  K  P  V  L  T  L  *  H  E  L  V  K  C  L  S  V  R  I  Q  R  P  V  L  L  K  L  *  A  L  A  S  E  Q  *  A  V  W  W  L  Q  L  P  Y  P  F  V  L  L  *  V  *  *  G  D  A  *  L  L  I  L  S  P  S  S  H  I  H  A  *  N  R  R  F  L  Q  L  G  Y  I  L  L  G  D  N  V  I  P  P  F  F  I  C  H  T  F  L  I  Q  F  C  I  F  C  S  S  D  N  C  C  C  L  *  L  L  L  L  L   </first_frame>
            <second_frame>  S  L  I  *  Y  I  L  A  S  N  T  S  L  L  S  S  L  D  C  W  F  W  I  L  L  E  F  Y  I  G  W  *  V  G  S  P  P  L  P  S  *  L  L  G  L  N  L  P  K  V  L  Y  L  Y  T  V  L  V  S  G  P  C  P  F  E  F  S  T  M  L  Q  L  G  W  V  *  G  V  L  E  H  Q  M  F  A  S  N  M  C  V  L  V  V  S  Q  S  *  H  C  S  M  N  L  S  N  V  Y  L  L  G  S  S  D  P  C  Y  *  S  Y  E  L  *  H  P  N  N  E  P  F  G  G  Y  N  Y  H  I  H  L  Y  F  Y  K  F  D  R  E  M  P  N  F  L  Y  F  P  L  V  H  I  F  M  H  E  I  G  V  F  C  N  W  V  I  F  C  L  V  I  T  *  F  P  L  F  L  F  V  T  H  F  L  F  N  F  V  Y  F  V  Q  V  I  I  V  V  V  C  D  Y  Y  Y  Y  Y  </second_frame>
            <third_frame>   H  *  F  N  I  S  *  L  L  I  L  V  S  *  A  P  *  T  V  G  F  G  Y  C  *  S  S  T  L  V  G  E  W  A  V  L  P  S  R  A  S  F  W  G  *  I  C  L  R  C  Y  I  F  T  R  Y  *  C  Q  V  H  A  P  L  S  S  Q  P  C  F  S  *  D  G  C  E  G  C  *  N  T  R  C  L  L  V  T  C  V  C  *  *  *  A  S  L  N  I  V  A  *  T  C  Q  M  F  I  C  *  D  P  A  T  R  V  T  K  V  M  S  S  S  I  R  T  M  S  R  L  V  V  T  T  T  I  S  I  C  T  S  I  S  L  I  G  R  C  L  T  S  Y  T  F  P  *  F  T  Y  S  C  M  K  *  A  F  S  A  I  G  L  Y  S  A  W  *  *  R  D  S  P  F  F  Y  L  S  H  I  S  Y  S  I  L  Y  I  L  F  K  *  *  L  L  L  F  V  I  I  I  I  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="57148" PGL_stop="59345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57148" e_stop="57453"/>
            <exon e_start="58562" e_stop="58675"/>
            <exon e_start="58776" e_stop="58896"/>
            <exon e_start="59322" e_stop="59345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.985" e_score="0.997"/>
          <exon-intron don_prob="0.043" acc_prob="0.985" e_score="0.991"/>
          <exon-intron don_prob="0.995" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="57148" e_stop="57453" e_length="306"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.985">
            <gDNA_intron_boundary i_start="57454" i_stop="58561" i_length="1108"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="58562" e_stop="58675" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.043" acc_prob="0.985">
            <gDNA_intron_boundary i_start="58676" i_stop="58775" i_length="100"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="58776" e_stop="58896" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.996">
            <gDNA_intron_boundary i_start="58897" i_stop="59321" i_length="425"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59322" e_stop="59345" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57148" stop="57453"/>
              <exon start="58562" stop="58675"/>
              <exon start="58776" stop="58896"/>
              <exon start="59322" stop="59345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U342957" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTTTCAATTTCCCCAAACCCTAGAACTGAAAAATCTAAGTAAATGGGTCGTCTTGTTTCTTGATTTTAATATCTGGGTCGTTTTTTTAGTTCTCGTTTTGCGTATCAGAATCTTCAAACAAGTTCATTTGCTGCAGAAAAAAGGAGCAATTTTTAATATTTTTATCTTCAATATTAGTAGTTCATTCACATTGGTGGAAGTTGGTTTGTTGGCATTTGTTTTTTATGGTTTGAGTTGAAACGGGTCGGACTCGGTTCTCTATGGCTCGGCGTCATGGGTGGCAACTACCGGCTCACTCGTTTCAG : GTTGTGGCTATAACAGTTTTCTGCCTGCTATCTGTTGCCTTCTATGCATTTTTTGCTCCATTTCTAGGAAAAGACATCTTTGAGTACATAGCAATTGGTGTTTATTCCTTCCTG : GCTCTATGTGTGTTCATACTCTATGTTAGATGCACAGCAATTGATCCTGCTGATCCTGGGATTCTCATTGAAGCTGACAAGTCAACGGCCTATCAATCACACAACGAAATAGAGTTGCCTG : GTGATATATCTGCTGCAGGGGGTC</gDNA_template>
            <first_frame> L  F  N  F  P  K  P  *  N  *  K  I  *  V  N  G  S  S  C  F  L  I  L  I  S  G  S  F  F  *  F  S  F  C  V  S  E  S  S  N  K  F  I  C  C  R  K  K  E  Q  F  L  I  F  L  S  S  I  L  V  V  H  S  H  W  W  K  L  V  C  W  H  L  F  F  M  V  *  V  E  T  G  R  T  R  F  S  M  A  R  R  H  G  W  Q  L  P  A  H  S  F  Q  :  V  V  A  I  T  V  F  C  L  L  S  V  A  F  Y  A  F  F  A  P  F  L  G  K  D  I  F  E  Y  I  A  I  G  V  Y  S  F  L  :  A  L  C  V  F  I  L  Y  V  R  C  T  A  I  D  P  A  D  P  G  I  L  I  E  A  D  K  S  T  A  Y  Q  S  H  N  E  I  E  L  P   : G  D  I  S  A  A  G  G  </first_frame>
            <second_frame>  F  S  I  S  P  N  P  R  T  E  K  S  K  *  M  G  R  L  V  S  *  F  *  Y  L  G  R  F  F  S  S  R  F  A  Y  Q  N  L  Q  T  S  S  F  A  A  E  K  R  S  N  F  *  Y  F  Y  L  Q  Y  *  *  F  I  H  I  G  G  S  W  F  V  G  I  C  F  L  W  F  E  L  K  R  V  G  L  G  S  L  W  L  G  V  M  G  G  N  Y  R  L  T  R  F  R :   L  W  L  *  Q  F  S  A  C  Y  L  L  P  S  M  H  F  L  L  H  F  *  E  K  T  S  L  S  T  *  Q  L  V  F  I  P  S  W :   L  Y  V  C  S  Y  S  M  L  D  A  Q  Q  L  I  L  L  I  L  G  F  S  L  K  L  T  S  Q  R  P  I  N  H  T  T  K  *  S  C  L  :  V  I  Y  L  L  Q  G  V </second_frame>
            <third_frame>   F  Q  F  P  Q  T  L  E  L  K  N  L  S  K  W  V  V  L  F  L  D  F  N  I  W  V  V  F  L  V  L  V  L  R  I  R  I  F  K  Q  V  H  L  L  Q  K  K  G  A  I  F  N  I  F  I  F  N  I  S  S  S  F  T  L  V  E  V  G  L  L  A  F  V  F  Y  G  L  S  *  N  G  S  D  S  V  L  Y  G  S  A  S  W  V  A  T  T  G  S  L  V  S   : G  C  G  Y  N  S  F  L  P  A  I  C  C  L  L  C  I  F  C  S  I  S  R  K  R  H  L  *  V  H  S  N  W  C  L  F  L  P   : G  S  M  C  V  H  T  L  C  *  M  H  S  N  *  S  C  *  S  W  D  S  H  *  S  *  Q  V  N  G  L  S  I  T  Q  R  N  R  V  A  W :   *  Y  I  C  C  R  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57382" stop="57453"/>
                    <exon start="58562" stop="58675"/>
                    <exon start="58776" stop="58896"/>
                    <exon start="59322" stop="59344"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VETGRTRFSMARRHGWQLPAHSFQVVAITVFCLLSVAFYAFFAPFLGKDIFEYIAIGVYSFLALCVFILYVRCTAIDPADPGILIEADKSTAYQSHNEIELPGDISAAGG</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57150" stop="57386"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQFPQTLELKNLSKWVVLFLDFNIWVVFLVLVLRIRIFKQVHLLQKKGAIFNIFIFNISSSFTLVEVGLLAFVFYGLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="61618" PGL_stop="63067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61618" e_stop="61744"/>
            <exon e_start="61848" e_stop="62026"/>
            <exon e_start="62567" e_stop="63067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61618" e_stop="61744" e_length="127"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="61745" i_stop="61847" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="61848" e_stop="62026" e_length="179"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="62027" i_stop="62566" i_length="540"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="62567" e_stop="63067" e_length="501"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61618" stop="61744"/>
              <exon start="61848" stop="62026"/>
              <exon start="62567" stop="63067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U347114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGTTCTCTTAGGGTTTAATATTCTTTTTTTCTTCTCTGTTTCAGGCCTTATGTACTGCTGTTTCACTCCTTGCAACTGTGCCTTTAGGTGAATTGTTCTTCTTTCACATTATTCTCATTCGTAAG : GGTATTACAACATATGAGTATGTTGTTGCAATGAGATCTCAAAGTGAGCCGCCTGGACCCTCTGTAGATGGAGGTGATCAGCAGAGTTTGCCATCATCGCCGACCAGCTCTGCGGTGACTGCCATCAGTGGAAGAAGTTCTGTTGGGATGAGCTTGCAACATAAAGGTGCTTGGTGTAC : TCCTTCCAAGAGCTCATATCCGCCCAGTCGTGCCAGCAGAGAAGACATTGAAACATGTGGCCACAGCATGAGTAACTTGAGCAGTCCTCTTGCCCCTAACCGAACTCCATCTCCATTAGCACTGCAGCATCACCCTTCAAATAGAGACCACTTTAACCCAATATATCAGTCATCTGCAAATCAATCTCCGTGGTCAGCAAAAGCATGCCATGAGAACGAATCTCTGCCCCCTGACAATCTCTCAGAGGTATCCACTAGGAAGAGTAATATGGGCACTCCAGAGAGTACAAGGTCATCAGTTTTCTGGGATCAAGAAGCCGGGCGATTTGTTACTGCTAATGCTAACAGGGGTGCTGGTTCTACTTCACAAGTTTCTGGAACAGAGCTTACATACACTGGTCAATCTATATTTTTTGGAGGGCCTTTACTGAACGAGAACATGAACAGAGGGGCAAGAAGTAGCGGTACACCGTTTGCTGGTGGTCCACAGCGGAGTTACTA</gDNA_template>
            <first_frame> L  V  L  L  G  F  N  I  L  F  F  F  S  V  S  G  L  M  Y  C  C  F  T  P  C  N  C  A  F  R  *  I  V  L  L  S  H  Y  S  H  S  *   : G  Y  Y  N  I  *  V  C  C  C  N  E  I  S  K  *  A  A  W  T  L  C  R  W  R  *  S  A  E  F  A  I  I  A  D  Q  L  C  G  D  C  H  Q  W  K  K  F  C  W  D  E  L  A  T  *  R  C  L  V  Y  :  S  F  Q  E  L  I  S  A  Q  S  C  Q  Q  R  R  H  *  N  M  W  P  Q  H  E  *  L  E  Q  S  S  C  P  *  P  N  S  I  S  I  S  T  A  A  S  P  F  K  *  R  P  L  *  P  N  I  S  V  I  C  K  S  I  S  V  V  S  K  S  M  P  *  E  R  I  S  A  P  *  Q  S  L  R  G  I  H  *  E  E  *  Y  G  H  S  R  E  Y  K  V  I  S  F  L  G  S  R  S  R  A  I  C  Y  C  *  C  *  Q  G  C  W  F  Y  F  T  S  F  W  N  R  A  Y  I  H  W  S  I  Y  I  F  W  R  A  F  T  E  R  E  H  E  Q  R  G  K  K  *  R  Y  T  V  C  W  W  S  T  A  E  L  L </first_frame>
            <second_frame>  L  F  S  *  G  L  I  F  F  F  S  S  L  F  Q  A  L  C  T  A  V  S  L  L  A  T  V  P  L  G  E  L  F  F  F  H  I  I  L  I  R  K  :  G  I  T  T  Y  E  Y  V  V  A  M  R  S  Q  S  E  P  P  G  P  S  V  D  G  G  D  Q  Q  S  L  P  S  S  P  T  S  S  A  V  T  A  I  S  G  R  S  S  V  G  M  S  L  Q  H  K  G  A  W  C  T :   P  S  K  S  S  Y  P  P  S  R  A  S  R  E  D  I  E  T  C  G  H  S  M  S  N  L  S  S  P  L  A  P  N  R  T  P  S  P  L  A  L  Q  H  H  P  S  N  R  D  H  F  N  P  I  Y  Q  S  S  A  N  Q  S  P  W  S  A  K  A  C  H  E  N  E  S  L  P  P  D  N  L  S  E  V  S  T  R  K  S  N  M  G  T  P  E  S  T  R  S  S  V  F  W  D  Q  E  A  G  R  F  V  T  A  N  A  N  R  G  A  G  S  T  S  Q  V  S  G  T  E  L  T  Y  T  G  Q  S  I  F  F  G  G  P  L  L  N  E  N  M  N  R  G  A  R  S  S  G  T  P  F  A  G  G  P  Q  R  S  Y   </second_frame>
            <third_frame>   C  S  L  R  V  *  Y  S  F  F  L  L  C  F  R  P  Y  V  L  L  F  H  S  L  Q  L  C  L  *  V  N  C  S  S  F  T  L  F  S  F  V  R :   V  L  Q  H  M  S  M  L  L  Q  *  D  L  K  V  S  R  L  D  P  L  *  M  E  V  I  S  R  V  C  H  H  R  R  P  A  L  R  *  L  P  S  V  E  E  V  L  L  G  *  A  C  N  I  K  V  L  G  V   : L  L  P  R  A  H  I  R  P  V  V  P  A  E  K  T  L  K  H  V  A  T  A  *  V  T  *  A  V  L  L  P  L  T  E  L  H  L  H  *  H  C  S  I  T  L  Q  I  E  T  T  L  T  Q  Y  I  S  H  L  Q  I  N  L  R  G  Q  Q  K  H  A  M  R  T  N  L  C  P  L  T  I  S  Q  R  Y  P  L  G  R  V  I  W  A  L  Q  R  V  Q  G  H  Q  F  S  G  I  K  K  P  G  D  L  L  L  L  M  L  T  G  V  L  V  L  L  H  K  F  L  E  Q  S  L  H  T  L  V  N  L  Y  F  L  E  G  L  Y  *  T  R  T  *  T  E  G  Q  E  V  A  V  H  R  L  L  V  V  H  S  G  V  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61631" stop="61744"/>
                    <exon start="61848" stop="62026"/>
                    <exon start="62567" stop="63065"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>792</number_coding_nucleotides>
                  <number_encoded_amino_acids>264</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GLIFFFSSLFQALCTAVSLLATVPLGELFFFHIILIRKGITTYEYVVAMRSQSEPPGPSVDGGDQQSLPSSPTSSAVTAISGRSSVGMSLQHKGAWCTPSKSSYPPSRASREDIETCGHSMSNLSSPLAPNRTPSPLALQHHPSNRDHFNPIYQSSANQSPWSAKACHENESLPPDNLSEVSTRKSNMGTPESTRSSVFWDQEAGRFVTANANRGAGSTSQVSGTELTYTGQSIFFGGPLLNENMNRGARSSGTPFAGGPQRSY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="65073" PGL_stop="66707"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="65073" e_stop="65170"/>
            <exon e_start="65296" e_stop="65448"/>
            <exon e_start="65602" e_stop="65661"/>
            <exon e_start="66281" e_stop="66707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.982" acc_prob="0.811" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.676" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65073" e_stop="65170" e_length="98"/>
          </exon>
          <intron i_serial="1" don_prob="0.982" acc_prob="0.811">
            <gDNA_intron_boundary i_start="65171" i_stop="65295" i_length="125"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="65296" e_stop="65448" e_length="153"/>
          </exon>
          <intron i_serial="2" don_prob="0.972" acc_prob="0.676">
            <gDNA_intron_boundary i_start="65449" i_stop="65601" i_length="153"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65602" e_stop="65661" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65662" i_stop="66280" i_length="619"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="66281" e_stop="66707" e_length="427"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65073" stop="65170"/>
              <exon start="65296" stop="65448"/>
              <exon start="65602" stop="65661"/>
              <exon start="66281" stop="66707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U331227" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GACTCCTGTAGGTACATTTTGACTGTGTATATCGTAATATTACTGCGGTTTCAAGTCGAGAATCTAAACTGTTGGCTGGTAATCGGATCATTTCACAG : TAGCCTTACGAGTTCCAGGTTGGAGCTCCTCCAGGGAAAGAGCGGAAACGTGATTTTGTGGACAATCCAAATGGTTTATTTTCTGCTCAAGCAGCACCAAAACCTCCAAAGGCAATGTATACAATAACTGAAGGGATGAAAGTTGGAGGAAAG : AGGACTGTGATCGTTCCTCCAGAAGCTGGATATGGTTCAAGGGGAATGAATGAAATTCCG : CCAGGGGCTACATTCAACCTGAATATTGAACTATTGGAAGTAAAGTCATCAGAACGGAAGCAATAGGTGTACCCGGACTGTGCCATATGTTTTGCCTTCCCTCTTCTTCATTGTTGTAAAAGTTGTGTTCACTCATAAACACCAACAGCTATGGAATCAACAACAGTTCCCGCTCACCCTTCACGTGATTTGAACCACGACTTATTGGATAAAAGAGACGGTGCCTCATCAACAGTGCCATCTCCTCTCATGATTTTTCTTCCCTTCATGTTAACTGTTCAGTCTTTGTTATGTAGATGAAGTAATTTGCTTCCAATTTTTTCCACGCTTCTTCATGTGTATGTAAACTTTTACTTCTTAACTTCCCATGTTACTAGATACATATATATATATTAGAGAGACATCACACTATCTTGACAATGAGAAA</gDNA_template>
            <first_frame> D  S  C  R  Y  I  L  T  V  Y  I  V  I  L  L  R  F  Q  V  E  N  L  N  C  W  L  V  I  G  S  F  H  S :   S  L  T  S  S  R  L  E  L  L  Q  G  K  S  G  N  V  I  L  W  T  I  Q  M  V  Y  F  L  L  K  Q  H  Q  N  L  Q  R  Q  C  I  Q  *  L  K  G  *  K  L  E  E  R :   G  L  *  S  F  L  Q  K  L  D  M  V  Q  G  E  *  M  K  F  R :   Q  G  L  H  S  T  *  I  L  N  Y  W  K  *  S  H  Q  N  G  S  N  R  C  T  R  T  V  P  Y  V  L  P  S  L  F  F  I  V  V  K  V  V  F  T  H  K  H  Q  Q  L  W  N  Q  Q  Q  F  P  L  T  L  H  V  I  *  T  T  T  Y  W  I  K  E  T  V  P  H  Q  Q  C  H  L  L  S  *  F  F  F  P  S  C  *  L  F  S  L  C  Y  V  D  E  V  I  C  F  Q  F  F  P  R  F  F  M  C  M  *  T  F  T  S  *  L  P  M  L  L  D  T  Y  I  Y  I  R  E  T  S  H  Y  L  D  N  E  K </first_frame>
            <second_frame>  T  P  V  G  T  F  *  L  C  I  S  *  Y  Y  C  G  F  K  S  R  I  *  T  V  G  W  *  S  D  H  F  T   : V  A  L  R  V  P  G  W  S  S  S  R  E  R  A  E  T  *  F  C  G  Q  S  K  W  F  I  F  C  S  S  S  T  K  T  S  K  G  N  V  Y  N  N  *  R  D  E  S  W  R  K   : E  D  C  D  R  S  S  R  S  W  I  W  F  K  G  N  E  *  N  S   : A  R  G  Y  I  Q  P  E  Y  *  T  I  G  S  K  V  I  R  T  E  A  I  G  V  P  G  L  C  H  M  F  C  L  P  S  S  S  L  L  *  K  L  C  S  L  I  N  T  N  S  Y  G  I  N  N  S  S  R  S  P  F  T  *  F  E  P  R  L  I  G  *  K  R  R  C  L  I  N  S  A  I  S  S  H  D  F  S  S  L  H  V  N  C  S  V  F  V  M  *  M  K  *  F  A  S  N  F  F  H  A  S  S  C  V  C  K  L  L  L  L  N  F  P  C  Y  *  I  H  I  Y  I  L  E  R  H  H  T  I  L  T  M  R   </second_frame>
            <third_frame>   L  L  *  V  H  F  D  C  V  Y  R  N  I  T  A  V  S  S  R  E  S  K  L  L  A  G  N  R  I  I  S  Q  :  *  P  Y  E  F  Q  V  G  A  P  P  G  K  E  R  K  R  D  F  V  D  N  P  N  G  L  F  S  A  Q  A  A  P  K  P  P  K  A  M  Y  T  I  T  E  G  M  K  V  G  G  K  :  R  T  V  I  V  P  P  E  A  G  Y  G  S  R  G  M  N  E  I  P  :  P  G  A  T  F  N  L  N  I  E  L  L  E  V  K  S  S  E  R  K  Q  *  V  Y  P  D  C  A  I  C  F  A  F  P  L  L  H  C  C  K  S  C  V  H  S  *  T  P  T  A  M  E  S  T  T  V  P  A  H  P  S  R  D  L  N  H  D  L  L  D  K  R  D  G  A  S  S  T  V  P  S  P  L  M  I  F  L  P  F  M  L  T  V  Q  S  L  L  C  R  *  S  N  L  L  P  I  F  S  T  L  L  H  V  Y  V  N  F  Y  F  L  T  S  H  V  T  R  Y  I  Y  I  Y  *  R  D  I  T  L  S  *  Q  *  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65299" stop="65448"/>
                    <exon start="65602" stop="65661"/>
                    <exon start="66281" stop="66346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYEFQVGAPPGKERKRDFVDNPNGLFSAQAAPKPPKAMYTITEGMKVGGKRTVIVPPEAGYGSRGMNEIPPGATFNLNIELLEVKSSERKQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65073" stop="65170"/>
                    <exon start="65296" stop="65422"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSCRYILTVYIVILLRFQVENLNCWLVIGSFHSSLTSSRLELLQGKSGNVILWTIQMVYFLLKQHQNLQRQCIQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="67146" PGL_stop="72631"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67146" e_stop="67357"/>
            <exon e_start="68116" e_stop="68160"/>
            <exon e_start="68355" e_stop="68989"/>
            <exon e_start="69075" e_stop="69222"/>
            <exon e_start="69294" e_stop="69470"/>
            <exon e_start="69688" e_stop="69756"/>
            <exon e_start="69853" e_stop="69942"/>
            <exon e_start="71541" e_stop="71699"/>
            <exon e_start="71780" e_stop="72004"/>
            <exon e_start="72199" e_stop="72631"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="0.995"/>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.444" e_score="1.000"/>
          <exon-intron don_prob="0.843" acc_prob="0.840" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.690" e_score="1.000"/>
          <exon-intron don_prob="0.706" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.934" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="67146" e_stop="67357" e_length="212"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67358" i_stop="68115" i_length="758"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68116" e_stop="68160" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68161" i_stop="68354" i_length="194"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="68355" e_stop="68989" e_length="635"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.444">
            <gDNA_intron_boundary i_start="68990" i_stop="69074" i_length="85"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69075" e_stop="69222" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.843" acc_prob="0.840">
            <gDNA_intron_boundary i_start="69223" i_stop="69293" i_length="71"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69294" e_stop="69470" e_length="177"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.690">
            <gDNA_intron_boundary i_start="69471" i_stop="69687" i_length="217"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69688" e_stop="69756" e_length="69"/>
          </exon>
          <intron i_serial="6" don_prob="0.706" acc_prob="0.996">
            <gDNA_intron_boundary i_start="69757" i_stop="69852" i_length="96"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="69853" e_stop="69942" e_length="90"/>
          </exon>
          <intron i_serial="7" don_prob="0.934" acc_prob="0.000">
            <gDNA_intron_boundary i_start="69943" i_stop="71540" i_length="1598"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="71541" e_stop="71699" e_length="159"/>
          </exon>
          <intron i_serial="8" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="71700" i_stop="71779" i_length="80"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="71780" e_stop="72004" e_length="225"/>
          </exon>
          <intron i_serial="9" don_prob="0.842" acc_prob="0.994">
            <gDNA_intron_boundary i_start="72005" i_stop="72198" i_length="194"/>
          </intron>
          <exon e_serial="10" e_score="0.998">
            <gDNA_exon_boundary e_start="72199" e_stop="72631" e_length="433"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67146" stop="67357"/>
              <exon start="68116" stop="68160"/>
              <exon start="68355" stop="68989"/>
              <exon start="69075" stop="69222"/>
              <exon start="69294" stop="69470"/>
              <exon start="69688" stop="69756"/>
              <exon start="69853" stop="69942"/>
              <exon start="71541" stop="71699"/>
              <exon start="71780" stop="72004"/>
              <exon start="72199" stop="72631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317376" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCAGTAGACAGTAGCGTTCAACTCCGACGATGGTCTTTTTCTCTGTTTGATATTTTTCCGATCTGATAGCCGGAGTAGTATAACGCATAAAGCTAAAAGGAAGAATCAGAAAATGACGATTCGTCTTTATTTGTTGTTTTCGTTTTTCGTTTTACTTGCTCAATGGTCGCCTGCACTTTCCGATCTAGTCATCTCCAAAGTTGATCGAAAG : ATTGACCTGACCTCTCAAGTAGTGCGTGTGACTGCAAATCTGAAG : ATAGAAAATACTGGTAATGATCCAATTTCAGAGGTTCTGTTACCATTTGGAGATCACCAGGCAAAAGATTTAGCATTTTTAGTGGCAACAACCAGTGAAGGGAAAGGGAAAACTAAAACTTCTTCCAATAGCCTACCTATCAAACTTGTTAACCCTGAAGGCATGCCACCATCATTGACTTGGTATTCTGTCTCCCTACCGAAGGAGCTGGCAAAGGGGCAGAGCCTAAATTTGGAAGTCAGGACTGCATTTACGCATGCACTACAGCCATTTCCTGAGAAAATTACTCAAGCTGATATCCAGCTCCTTGTGTTTCAGGAGAGTGCCTACTATATTTCTCCTTATGCAGTTAATGTCCAATCTCTCAGTGTCAAATTACCCGAACCAAAAGTCGAATCATACACTAAGTTAGAGAACACCAAATTTTCTGGTTCAGAAATTAAATATGGACCTTATGAGAATCTTCCTCCTTTCTCATTCTCGCATATAGCAGTACACTTCGTGAGCAATAAGCCATTCGCAGTTGCCCAGGAGTTAGTGCGAGAGATTGAAGTCTCTCATTGGGGAAATGTTCAGATCACAGAGCATTATAACCTTGTCAATGCTGGTGCCAGAAGCAGTGGGGAGTTTTCAAG : GCTAGAGTACCAGGCCCGACCACATCTCAGAGGTGCATCGTCATTCGGACATCTTGTTGCCAAATTGCCTCCAAGAGCCCATTCCATTTATTACAGAGATGAAATTGGCAATATATCAACATCCAATTTATGGGGTGATTCATCAAAG : ACATTGTTACAAATTGAACCTAGGTATCCGATGTTTGGTGGCTGGAAAACTTCTTTTACCATCGGCTATGGGCTGCCCCTTAGGGACTATTTGTTCCGTGCAGAGGGGAAACGTTTCTTAAATATATCTTTTGGTTGCCCAATTGAGGAGGTGGTTGTTGAAAACCTTGTTGTGAAG : GTTGTACTGCCAGAAGGTTCAAAGGATATTTCTGTCTCGGTCCCTTTTCCTGTCAAAGAGTCAAGAGAC : ACGAAATTTTCCAATTTGGATATGATTGGTAGACCAGTGGTTGTTCTTGAAAAGACCAATGCTGTGCATGAGCATAACCAATATTTCCAG : GTCTATTACAGGTTCAGCAATCTGTCACTGCTTAGAGAACCAATGATGTTAATTTCTGGATTTTTCTTCTTATTCCTTGCATGTATCATATATATGCATGCGGACCTAACAATCTCAAAGTCCTCTCCTTCTTATCTTGCAAAACTGCAGTGGGATGAG : GTGCAGACTGCTCTTCAGCAGATCCAGAGCATAATGAACCATTGTTTGGGCATTCATGATAAACTTGAAGCATCATTACGAGATCTGTCAAGGACTGGTGATGTGCAAGCATGCAAAGCTGCTCGTAAATCAGCTGATAATATGTTGAAGGAGCTTTTGAAGGATTTAAAGCCTTTAGTCTCCTTTTTGCAGTCTTCTCCGCTGTCTGCTTCATTATATTCTAAG : GTTGAGGATGTTGTTGCAAAGGAGAAAGAGCTGCAGGAGAAGCTGATAGTGAAACACACCACAGTTACAGATAGTTATGAAAAGAAGTCTGGTGGTCGAGATATTGAGAACCGTATTGCACCAATCCAGCAAAGAATTAGAGCTTTGAGACAGGAAATTGATGATCTTCTGGAAATAATTGATGAGATATAATTTCAGTGCAGACAACATTGATCCAATATAAATGGCTAAAATATTGTTGTGAGGTGAACAACAGAATTAGGATCAATTCGAGATATTAGTTGATGCAGCTGTATGTTGTTGAGAACCTGAATAACTTTGTAGTTGTAGAATTCTAGGTTCTTGCCGAATCTCTTTGGTTGACAATCAAATGAGTGCTGTAGACAACTGTTTTTTCATATATATTGAGTTGTTAAGTTTATGGTTTTCTAAC</gDNA_template>
            <first_frame> V  S  R  Q  *  R  S  T  P  T  M  V  F  F  S  V  *  Y  F  S  D  L  I  A  G  V  V  *  R  I  K  L  K  G  R  I  R  K  *  R  F  V  F  I  C  C  F  R  F  S  F  Y  L  L  N  G  R  L  H  F  P  I  *  S  S  P  K  L  I  E  R :   L  T  *  P  L  K  *  C  V  *  L  Q  I  *  R :   *  K  I  L  V  M  I  Q  F  Q  R  F  C  Y  H  L  E  I  T  R  Q  K  I  *  H  F  *  W  Q  Q  P  V  K  G  K  G  K  L  K  L  L  P  I  A  Y  L  S  N  L  L  T  L  K  A  C  H  H  H  *  L  G  I  L  S  P  Y  R  R  S  W  Q  R  G  R  A  *  I  W  K  S  G  L  H  L  R  M  H  Y  S  H  F  L  R  K  L  L  K  L  I  S  S  S  L  C  F  R  R  V  P  T  I  F  L  L  M  Q  L  M  S  N  L  S  V  S  N  Y  P  N  Q  K  S  N  H  T  L  S  *  R  T  P  N  F  L  V  Q  K  L  N  M  D  L  M  R  I  F  L  L  S  H  S  R  I  *  Q  Y  T  S  *  A  I  S  H  S  Q  L  P  R  S  *  C  E  R  L  K  S  L  I  G  E  M  F  R  S  Q  S  I  I  T  L  S  M  L  V  P  E  A  V  G  S  F  Q   : G  *  S  T  R  P  D  H  I  S  E  V  H  R  H  S  D  I  L  L  P  N  C  L  Q  E  P  I  P  F  I  T  E  M  K  L  A  I  Y  Q  H  P  I  Y  G  V  I  H  Q  R :   H  C  Y  K  L  N  L  G  I  R  C  L  V  A  G  K  L  L  L  P  S  A  M  G  C  P  L  G  T  I  C  S  V  Q  R  G  N  V  S  *  I  Y  L  L  V  A  Q  L  R  R  W  L  L  K  T  L  L  *  R :   L  Y  C  Q  K  V  Q  R  I  F  L  S  R  S  L  F  L  S  K  S  Q  E  T :   R  N  F  P  I  W  I  *  L  V  D  Q  W  L  F  L  K  R  P  M  L  C  M  S  I  T  N  I  S  R :   S  I  T  G  S  A  I  C  H  C  L  E  N  Q  *  C  *  F  L  D  F  S  S  Y  S  L  H  V  S  Y  I  C  M  R  T  *  Q  S  Q  S  P  L  L  L  I  L  Q  N  C  S  G  M  R :   C  R  L  L  F  S  R  S  R  A  *  *  T  I  V  W  A  F  M  I  N  L  K  H  H  Y  E  I  C  Q  G  L  V  M  C  K  H  A  K  L  L  V  N  Q  L  I  I  C  *  R  S  F  *  R  I  *  S  L  *  S  P  F  C  S  L  L  R  C  L  L  H  Y  I  L  R :   L  R  M  L  L  Q  R  R  K  S  C  R  R  S  *  *  *  N  T  P  Q  L  Q  I  V  M  K  R  S  L  V  V  E  I  L  R  T  V  L  H  Q  S  S  K  E  L  E  L  *  D  R  K  L  M  I  F  W  K  *  L  M  R  Y  N  F  S  A  D  N  I  D  P  I  *  M  A  K  I  L  L  *  G  E  Q  Q  N  *  D  Q  F  E  I  L  V  D  A  A  V  C  C  *  E  P  E  *  L  C  S  C  R  I  L  G  S  C  R  I  S  L  V  D  N  Q  M  S  A  V  D  N  C  F  F  I  Y  I  E  L  L  S  L  W  F  S  N </first_frame>
            <second_frame>  S  V  D  S  S  V  Q  L  R  R  W  S  F  S  L  F  D  I  F  P  I  *  *  P  E  *  Y  N  A  *  S  *  K  E  E  S  E  N  D  D  S  S  L  F  V  V  F  V  F  R  F  T  C  S  M  V  A  C  T  F  R  S  S  H  L  Q  S  *  S  K   : D  *  P  D  L  S  S  S  A  C  D  C  K  S  E   : D  R  K  Y  W  *  *  S  N  F  R  G  S  V  T  I  W  R  S  P  G  K  R  F  S  I  F  S  G  N  N  Q  *  R  E  R  E  N  *  N  F  F  Q  *  P  T  Y  Q  T  C  *  P  *  R  H  A  T  I  I  D  L  V  F  C  L  P  T  E  G  A  G  K  G  A  E  P  K  F  G  S  Q  D  C  I  Y  A  C  T  T  A  I  S  *  E  N  Y  S  S  *  Y  P  A  P  C  V  S  G  E  C  L  L  Y  F  S  L  C  S  *  C  P  I  S  Q  C  Q  I  T  R  T  K  S  R  I  I  H  *  V  R  E  H  Q  I  F  W  F  R  N  *  I  W  T  L  *  E  S  S  S  F  L  I  L  A  Y  S  S  T  L  R  E  Q  *  A  I  R  S  C  P  G  V  S  A  R  D  *  S  L  S  L  G  K  C  S  D  H  R  A  L  *  P  C  Q  C  W  C  Q  K  Q  W  G  V  F  K  :  A  R  V  P  G  P  T  T  S  Q  R  C  I  V  I  R  T  S  C  C  Q  I  A  S  K  S  P  F  H  L  L  Q  R  *  N  W  Q  Y  I  N  I  Q  F  M  G  *  F  I  K   : D  I  V  T  N  *  T  *  V  S  D  V  W  W  L  E  N  F  F  Y  H  R  L  W  A  A  P  *  G  L  F  V  P  C  R  G  E  T  F  L  K  Y  I  F  W  L  P  N  *  G  G  G  C  *  K  P  C  C  E   : G  C  T  A  R  R  F  K  G  Y  F  C  L  G  P  F  S  C  Q  R  V  K  R   : H  E  I  F  Q  F  G  Y  D  W  *  T  S  G  C  S  *  K  D  Q  C  C  A  *  A  *  P  I  F  P   : G  L  L  Q  V  Q  Q  S  V  T  A  *  R  T  N  D  V  N  F  W  I  F  L  L  I  P  C  M  Y  H  I  Y  A  C  G  P  N  N  L  K  V  L  S  F  L  S  C  K  T  A  V  G  *   : G  A  D  C  S  S  A  D  P  E  H  N  E  P  L  F  G  H  S  *  *  T  *  S  I  I  T  R  S  V  K  D  W  *  C  A  S  M  Q  S  C  S  *  I  S  *  *  Y  V  E  G  A  F  E  G  F  K  A  F  S  L  L  F  A  V  F  S  A  V  C  F  I  I  F  *   : G  *  G  C  C  C  K  G  E  R  A  A  G  E  A  D  S  E  T  H  H  S  Y  R  *  L  *  K  E  V  W  W  S  R  Y  *  E  P  Y  C  T  N  P  A  K  N  *  S  F  E  T  G  N  *  *  S  S  G  N  N  *  *  D  I  I  S  V  Q  T  T  L  I  Q  Y  K  W  L  K  Y  C  C  E  V  N  N  R  I  R  I  N  S  R  Y  *  L  M  Q  L  Y  V  V  E  N  L  N  N  F  V  V  V  E  F  *  V  L  A  E  S  L  W  L  T  I  K  *  V  L  *  T  T  V  F  S  Y  I  L  S  C  *  V  Y  G  F  L   </second_frame>
            <third_frame>   Q  *  T  V  A  F  N  S  D  D  G  L  F  L  C  L  I  F  F  R  S  D  S  R  S  S  I  T  H  K  A  K  R  K  N  Q  K  M  T  I  R  L  Y  L  L  F  S  F  F  V  L  L  A  Q  W  S  P  A  L  S  D  L  V  I  S  K  V  D  R  K  :  I  D  L  T  S  Q  V  V  R  V  T  A  N  L  K  :  I  E  N  T  G  N  D  P  I  S  E  V  L  L  P  F  G  D  H  Q  A  K  D  L  A  F  L  V  A  T  T  S  E  G  K  G  K  T  K  T  S  S  N  S  L  P  I  K  L  V  N  P  E  G  M  P  P  S  L  T  W  Y  S  V  S  L  P  K  E  L  A  K  G  Q  S  L  N  L  E  V  R  T  A  F  T  H  A  L  Q  P  F  P  E  K  I  T  Q  A  D  I  Q  L  L  V  F  Q  E  S  A  Y  Y  I  S  P  Y  A  V  N  V  Q  S  L  S  V  K  L  P  E  P  K  V  E  S  Y  T  K  L  E  N  T  K  F  S  G  S  E  I  K  Y  G  P  Y  E  N  L  P  P  F  S  F  S  H  I  A  V  H  F  V  S  N  K  P  F  A  V  A  Q  E  L  V  R  E  I  E  V  S  H  W  G  N  V  Q  I  T  E  H  Y  N  L  V  N  A  G  A  R  S  S  G  E  F  S  R :   L  E  Y  Q  A  R  P  H  L  R  G  A  S  S  F  G  H  L  V  A  K  L  P  P  R  A  H  S  I  Y  Y  R  D  E  I  G  N  I  S  T  S  N  L  W  G  D  S  S  K  :  T  L  L  Q  I  E  P  R  Y  P  M  F  G  G  W  K  T  S  F  T  I  G  Y  G  L  P  L  R  D  Y  L  F  R  A  E  G  K  R  F  L  N  I  S  F  G  C  P  I  E  E  V  V  V  E  N  L  V  V  K  :  V  V  L  P  E  G  S  K  D  I  S  V  S  V  P  F  P  V  K  E  S  R  D  :  T  K  F  S  N  L  D  M  I  G  R  P  V  V  V  L  E  K  T  N  A  V  H  E  H  N  Q  Y  F  Q  :  V  Y  Y  R  F  S  N  L  S  L  L  R  E  P  M  M  L  I  S  G  F  F  F  L  F  L  A  C  I  I  Y  M  H  A  D  L  T  I  S  K  S  S  P  S  Y  L  A  K  L  Q  W  D  E  :  V  Q  T  A  L  Q  Q  I  Q  S  I  M  N  H  C  L  G  I  H  D  K  L  E  A  S  L  R  D  L  S  R  T  G  D  V  Q  A  C  K  A  A  R  K  S  A  D  N  M  L  K  E  L  L  K  D  L  K  P  L  V  S  F  L  Q  S  S  P  L  S  A  S  L  Y  S  K  :  V  E  D  V  V  A  K  E  K  E  L  Q  E  K  L  I  V  K  H  T  T  V  T  D  S  Y  E  K  K  S  G  G  R  D  I  E  N  R  I  A  P  I  Q  Q  R  I  R  A  L  R  Q  E  I  D  D  L  L  E  I  I  D  E  I  *  F  Q  C  R  Q  H  *  S  N  I  N  G  *  N  I  V  V  R  *  T  T  E  L  G  S  I  R  D  I  S  *  C  S  C  M  L  L  R  T  *  I  T  L  *  L  *  N  S  R  F  L  P  N  L  F  G  *  Q  S  N  E  C  C  R  Q  L  F  F  H  I  Y  *  V  V  K  F  M  V  F  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67154" stop="67357"/>
                    <exon start="68116" stop="68160"/>
                    <exon start="68355" stop="68989"/>
                    <exon start="69075" stop="69222"/>
                    <exon start="69294" stop="69470"/>
                    <exon start="69688" stop="69756"/>
                    <exon start="69853" stop="69942"/>
                    <exon start="71541" stop="71699"/>
                    <exon start="71780" stop="72004"/>
                    <exon start="72199" stop="72390"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1941</number_coding_nucleotides>
                  <number_encoded_amino_acids>647</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVAFNSDDGLFLCLIFFRSDSRSSITHKAKRKNQKMTIRLYLLFSFFVLLAQWSPALSDLVISKVDRKIDLTSQVVRVTANLKIENTGNDPISEVLLPFGDHQAKDLAFLVATTSEGKGKTKTSSNSLPIKLVNPEGMPPSLTWYSVSLPKELAKGQSLNLEVRTAFTHALQPFPEKITQADIQLLVFQESAYYISPYAVNVQSLSVKLPEPKVESYTKLENTKFSGSEIKYGPYENLPPFSFSHIAVHFVSNKPFAVAQELVREIEVSHWGNVQITEHYNLVNAGARSSGEFSRLEYQARPHLRGASSFGHLVAKLPPRAHSIYYRDEIGNISTSNLWGDSSKTLLQIEPRYPMFGGWKTSFTIGYGLPLRDYLFRAEGKRFLNISFGCPIEEVVVENLVVKVVLPEGSKDISVSVPFPVKESRDTKFSNLDMIGRPVVVLEKTNAVHEHNQYFQVYYRFSNLSLLREPMMLISGFFFLFLACIIYMHADLTISKSSPSYLAKLQWDEVQTALQQIQSIMNHCLGIHDKLEASLRDLSRTGDVQACKAARKSADNMLKELLKDLKPLVSFLQSSPLSASLYSKVEDVVAKEKELQEKLIVKHTTVTDSYEKKSGGRDIENRIAPIQQRIRALRQEIDDLLEIIDEI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="+" PGL_start="73213" PGL_stop="78289"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73213" e_stop="73436"/>
            <exon e_start="74789" e_stop="74863"/>
            <exon e_start="76459" e_stop="76611"/>
            <exon e_start="77242" e_stop="77340"/>
            <exon e_start="77966" e_stop="78289"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.975" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.720" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.941" e_score="0.990"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73213" e_stop="73436" e_length="224"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73437" i_stop="74788" i_length="1352"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74789" e_stop="74863" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.975" acc_prob="0.954">
            <gDNA_intron_boundary i_start="74864" i_stop="76458" i_length="1595"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="76459" e_stop="76611" e_length="153"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.720">
            <gDNA_intron_boundary i_start="76612" i_stop="77241" i_length="630"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="77242" e_stop="77340" e_length="99"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.941">
            <gDNA_intron_boundary i_start="77341" i_stop="77965" i_length="625"/>
          </intron>
          <exon e_serial="5" e_score="0.997">
            <gDNA_exon_boundary e_start="77966" e_stop="78289" e_length="324"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73213" stop="73436"/>
              <exon start="74789" stop="74863"/>
              <exon start="76459" stop="76611"/>
              <exon start="77242" stop="77340"/>
              <exon start="77966" stop="78289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317136" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGTGTTTATAGAGTCTGGTTATCCATTCCCAGCTGAAGCAACTCTTCCATTCATATATATCTAGGGTTTAACCAGTTGGGGGTTGGGGGATTCTTCTACAGTGAAGAACACCTGCATTTAACAGAAAATGGAGAGCTCACTTCGTTATGCTGGAGATTCCAAGAGTCTGGTGATTCATGCCAAGGAGAAATTTCCTCTTAACACTTTCACCCATTTGCAG : GGTCATGCAGAACTAGACACCAAAATTGGAGCACCAACTTATCTCTGTGCTATGATAAGGCAATACTTTCCTGAT : CAATATGCTAGTCTTGCTGTGGGAGTGCAATATTATAGGCGGCAAAAGCTCTGGTATACTGTTCGTGGTAAAAAAGAATTTCCAGTGACGGCAAATAATTCGGTTAACTTTCATATTAAGGGCAAGTACGATGTGGACGAAAAACTTTTGGAG : AAAAAGTCGAGAGTTGCTGCTGAATTTACTTGGGATATCATGGATGTGAAAAAAGACCAAGATGTGAGGCTCAAAGTTGGATACGAAGTCATTGAAAAG : GTCCCTTACTTTCAGTTTAGTGAAAACAACTGGACTCTCACTGTCAACAATATTGGGAAATGGAAAGTAAGATATGATTTGTGATATTACTGATGGACGCATAAATTGTTCAGTTAGAGTGGTTATAATTGCTAGAAAGAAGAAAACCATCATCCTTCATCTGTGTTTCTATTACGTATTTTGACATTCTATCATTGCAAAAAGGCACATTACCTTGTGTAAGATCTGGTTTTGAGTATTGTTAACAGAGATAGTGCCATTGCAATACAAAATTGAAACTCATGAAAATTACCTTTCATTTGTGTAAGAAATTTTGCTCCCCAT</gDNA_template>
            <first_frame> F  G  C  L  *  S  L  V  I  H  S  Q  L  K  Q  L  F  H  S  Y  I  S  R  V  *  P  V  G  G  W  G  I  L  L  Q  *  R  T  P  A  F  N  R  K  W  R  A  H  F  V  M  L  E  I  P  R  V  W  *  F  M  P  R  R  N  F  L  L  T  L  S  P  I  C  R :   V  M  Q  N  *  T  P  K  L  E  H  Q  L  I  S  V  L  *  *  G  N  T  F  L  I :   N  M  L  V  L  L  W  E  C  N  I  I  G  G  K  S  S  G  I  L  F  V  V  K  K  N  F  Q  *  R  Q  I  I  R  L  T  F  I  L  R  A  S  T  M  W  T  K  N  F  W  R :   K  S  R  E  L  L  L  N  L  L  G  I  S  W  M  *  K  K  T  K  M  *  G  S  K  L  D  T  K  S  L  K  R :   S  L  T  F  S  L  V  K  T  T  G  L  S  L  S  T  I  L  G  N  G  K  *  D  M  I  C  D  I  T  D  G  R  I  N  C  S  V  R  V  V  I  I  A  R  K  K  K  T  I  I  L  H  L  C  F  Y  Y  V  F  *  H  S  I  I  A  K  R  H  I  T  L  C  K  I  W  F  *  V  L  L  T  E  I  V  P  L  Q  Y  K  I  E  T  H  E  N  Y  L  S  F  V  *  E  I  L  L  P   </first_frame>
            <second_frame>  L  G  V  Y  R  V  W  L  S  I  P  S  *  S  N  S  S  I  H  I  Y  L  G  F  N  Q  L  G  V  G  G  F  F  Y  S  E  E  H  L  H  L  T  E  N  G  E  L  T  S  L  C  W  R  F  Q  E  S  G  D  S  C  Q  G  E  I  S  S  *  H  F  H  P  F  A   : G  S  C  R  T  R  H  Q  N  W  S  T  N  L  S  L  C  Y  D  K  A  I  L  S  *   : S  I  C  *  S  C  C  G  S  A  I  L  *  A  A  K  A  L  V  Y  C  S  W  *  K  R  I  S  S  D  G  K  *  F  G  *  L  S  Y  *  G  Q  V  R  C  G  R  K  T  F  G   : E  K  V  E  S  C  C  *  I  Y  L  G  Y  H  G  C  E  K  R  P  R  C  E  A  Q  S  W  I  R  S  H  *  K   : G  P  L  L  S  V  *  *  K  Q  L  D  S  H  C  Q  Q  Y  W  E  M  E  S  K  I  *  F  V  I  L  L  M  D  A  *  I  V  Q  L  E  W  L  *  L  L  E  R  R  K  P  S  S  F  I  C  V  S  I  T  Y  F  D  I  L  S  L  Q  K  G  T  L  P  C  V  R  S  G  F  E  Y  C  *  Q  R  *  C  H  C  N  T  K  L  K  L  M  K  I  T  F  H  L  C  K  K  F  C  S  P  </second_frame>
            <third_frame>   W  V  F  I  E  S  G  Y  P  F  P  A  E  A  T  L  P  F  I  Y  I  *  G  L  T  S  W  G  L  G  D  S  S  T  V  K  N  T  C  I  *  Q  K  M  E  S  S  L  R  Y  A  G  D  S  K  S  L  V  I  H  A  K  E  K  F  P  L  N  T  F  T  H  L  Q  :  G  H  A  E  L  D  T  K  I  G  A  P  T  Y  L  C  A  M  I  R  Q  Y  F  P  D  :  Q  Y  A  S  L  A  V  G  V  Q  Y  Y  R  R  Q  K  L  W  Y  T  V  R  G  K  K  E  F  P  V  T  A  N  N  S  V  N  F  H  I  K  G  K  Y  D  V  D  E  K  L  L  E  :  K  K  S  R  V  A  A  E  F  T  W  D  I  M  D  V  K  K  D  Q  D  V  R  L  K  V  G  Y  E  V  I  E  K  :  V  P  Y  F  Q  F  S  E  N  N  W  T  L  T  V  N  N  I  G  K  W  K  V  R  Y  D  L  *  Y  Y  *  W  T  H  K  L  F  S  *  S  G  Y  N  C  *  K  E  E  N  H  H  P  S  S  V  F  L  L  R  I  L  T  F  Y  H  C  K  K  A  H  Y  L  V  *  D  L  V  L  S  I  V  N  R  D  S  A  I  A  I  Q  N  *  N  S  *  K  L  P  F  I  C  V  R  N  F  A  P  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73338" stop="73436"/>
                    <exon start="74789" stop="74863"/>
                    <exon start="76459" stop="76611"/>
                    <exon start="77242" stop="77340"/>
                    <exon start="77966" stop="78049"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKMESSLRYAGDSKSLVIHAKEKFPLNTFTHLQGHAELDTKIGAPTYLCAMIRQYFPDQYASLAVGVQYYRRQKLWYTVRGKKEFPVTANNSVNFHIKGKYDVDEKLLEKKSRVAAEFTWDIMDVKKDQDVRLKVGYEVIEKVPYFQFSENNWTLTVNNIGKWKVRYDL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="87659" PGL_stop="83845"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87659" e_stop="87572"/>
            <exon e_start="86867" e_stop="85927"/>
            <exon e_start="85336" e_stop="85149"/>
            <exon e_start="84464" e_stop="83845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.944" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.796" e_score="0.999"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87659" e_stop="87572" e_length="88"/>
          </exon>
          <intron i_serial="1" don_prob="0.944" acc_prob="0.998">
            <gDNA_intron_boundary i_start="87571" i_stop="86868" i_length="704"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="86867" e_stop="85927" e_length="941"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.796">
            <gDNA_intron_boundary i_start="85926" i_stop="85337" i_length="590"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="85336" e_stop="85149" e_length="188"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="85148" i_stop="84465" i_length="684"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="84464" e_stop="83845" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87659" stop="87572"/>
              <exon start="86867" stop="85927"/>
              <exon start="85336" stop="85149"/>
              <exon start="84464" stop="83845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323433" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCTCCTCGATGGCTAGTCAGTAAAGGAAGAATGGTCGAGGCAAAACAAGTTTTGCAGAAATTGCGTGGCATAGAGGATGTTTCAG : GGGAGATGGCATTGCTTGTTGAGGGTTTGGCTGTTGGCATTGAACCATCAATAGAAGAGTATATCATTGGTCCAGCTGATGAGCTTACTGAGGATCAGGACCTGGCTACTGACAAAGATCATATCAAGTTGTACGGCCCAGAGGAAGGCCTCTCGTGGGTGGCCAAGCCAGTTACTGGACAGAGTAGTCTAGCTCTTGTGTCCAGGCAAGGGAGCATGGTGCAGCAGAGTGTGCCTCTTATGGATCCTCTTGTGACTCTATTTGGTAGTGTCCATGAGAAGCTCCCTGATACAGGAAGTATGAGGAGCATGCTATTCCCCAATTTCGGAAGCATGATCAGCACCATGGATCCTCATGTCAAAGATGATCACTGGGATGAGGAGAGTCTGCAGAGAGAAGGTGATGATTATCCTTCGGATGGCGGTGCAGATTCTGATGACAATCTACAAAGTCCATTGATATCACGTCAAACAACCGCTGTGGAAACCGTAGTCCCTCATCCCCATGGCAGCACTATGAGCGTGAGGCGGCATAGCAGCCTAATGCAAGGCAATGCTGGAGAGGGTGTAGGCAGCATGGGCATTGGTGGTGGTTGGCAGTTGGCATGGAAATGGTCTGAAAGGGAAGGTGAAGATGGAATTAAAGAAGGAGGCTTCAAAAGGATATATTTGCATCAGGAGGCGGGCCCTAGCTCTCGACGTGGGTCTCTCGTTTCAGTTCCTGGTGGCGATATTCATGAAGATGGTGAATTCATACAAGCTGCGGCTTTGGTAAGTCAGCCTGCAGTTTACTCTAAGGAACTTATGGATCAGCATCCTGTGGGACCAGCAATGGTCCATCCATCTGAAACTGCTTCAAAAGGTCCGAGTTGGGCTGCTCTTCTTGAACCAGGAGTCAAGCGAGCGCTCATAGTTGGAATTGGAATTCAAATATTGCAACAG : TTCTCTGGTATAAATGGAGTCATGTACTACACTCCTCAAATCCTTGAGCAGGCAGGTGTAGGAGTTCTTCTTTCTAACTTTGGCATCGCATCAGACTCAGCATCCTTCCTCATCAGTGCGTTAACAAACTTCCTGATGCTCCCTTCTGTAGCAATTGCAATGCGGTTCATGGATGTGGCTGGCAGAAG : GTCGCTGCTGCTGTACACTATTCCTGTTCTCATACTATCACTCATCTGTCTTGTCATTGGTAACACTGTCAACCTGGGGAGTGTAGCTCATGCAGTCGTTTCTACTATTTGCGTGATTCTCTACTTTTGTTTCTTTGTGACGGGCTATGGACCCATCCCAAATATCCTCTGCTCAGAAATTTTTCCAACTAGGGTTCGTGGTTTGTGCATCGCCATCTGTGCTCTCGTCTTCTGGATATGTGATGTCATTGTGACTTACACACTGCCTGTGATGCTCAACTCGATTGGTTTATCTGGCGTGTTTGGTATTTATGCCATTGTCTGTGTCATTTCTTGGATTTTCGTCTTCTTAAGGGTTCCCGAAACCAAAGGCATGCCCTTAGAAGTCATTACAGAGTTCTTTGCTGTTGGTGCAAGACAAGCTGCTGCTATCGCAAAGCATGAGTAGTTAGTTTTAAGGTATCTTCTGTCCGATTTACTACAAGTATGTAGTAAAATTTGTAGAAAATAAAAAAATGTTATCCTCTCTAGGTGTCCTCCATTTTACATCCATCTGGTACTGGCATTTCTCAATAGTTATTACTGCTATATTTGTCCACCATTTTGAGATGTCCAAATTA</gDNA_template>
            <first_frame> E  S  P  R  W  L  V  S  K  G  R  M  V  E  A  K  Q  V  L  Q  K  L  R  G  I  E  D  V  S   : G  E  M  A  L  L  V  E  G  L  A  V  G  I  E  P  S  I  E  E  Y  I  I  G  P  A  D  E  L  T  E  D  Q  D  L  A  T  D  K  D  H  I  K  L  Y  G  P  E  E  G  L  S  W  V  A  K  P  V  T  G  Q  S  S  L  A  L  V  S  R  Q  G  S  M  V  Q  Q  S  V  P  L  M  D  P  L  V  T  L  F  G  S  V  H  E  K  L  P  D  T  G  S  M  R  S  M  L  F  P  N  F  G  S  M  I  S  T  M  D  P  H  V  K  D  D  H  W  D  E  E  S  L  Q  R  E  G  D  D  Y  P  S  D  G  G  A  D  S  D  D  N  L  Q  S  P  L  I  S  R  Q  T  T  A  V  E  T  V  V  P  H  P  H  G  S  T  M  S  V  R  R  H  S  S  L  M  Q  G  N  A  G  E  G  V  G  S  M  G  I  G  G  G  W  Q  L  A  W  K  W  S  E  R  E  G  E  D  G  I  K  E  G  G  F  K  R  I  Y  L  H  Q  E  A  G  P  S  S  R  R  G  S  L  V  S  V  P  G  G  D  I  H  E  D  G  E  F  I  Q  A  A  A  L  V  S  Q  P  A  V  Y  S  K  E  L  M  D  Q  H  P  V  G  P  A  M  V  H  P  S  E  T  A  S  K  G  P  S  W  A  A  L  L  E  P  G  V  K  R  A  L  I  V  G  I  G  I  Q  I  L  Q  Q  :  F  S  G  I  N  G  V  M  Y  Y  T  P  Q  I  L  E  Q  A  G  V  G  V  L  L  S  N  F  G  I  A  S  D  S  A  S  F  L  I  S  A  L  T  N  F  L  M  L  P  S  V  A  I  A  M  R  F  M  D  V  A  G  R  R :   S  L  L  L  Y  T  I  P  V  L  I  L  S  L  I  C  L  V  I  G  N  T  V  N  L  G  S  V  A  H  A  V  V  S  T  I  C  V  I  L  Y  F  C  F  F  V  T  G  Y  G  P  I  P  N  I  L  C  S  E  I  F  P  T  R  V  R  G  L  C  I  A  I  C  A  L  V  F  W  I  C  D  V  I  V  T  Y  T  L  P  V  M  L  N  S  I  G  L  S  G  V  F  G  I  Y  A  I  V  C  V  I  S  W  I  F  V  F  L  R  V  P  E  T  K  G  M  P  L  E  V  I  T  E  F  F  A  V  G  A  R  Q  A  A  A  I  A  K  H  E  *  L  V  L  R  Y  L  L  S  D  L  L  Q  V  C  S  K  I  C  R  K  *  K  N  V  I  L  S  R  C  P  P  F  Y  I  H  L  V  L  A  F  L  N  S  Y  Y  C  Y  I  C  P  P  F  *  D  V  Q  I  </first_frame>
            <second_frame>  N  L  L  D  G  *  S  V  K  E  E  W  S  R  Q  N  K  F  C  R  N  C  V  A  *  R  M  F  Q  :  G  R  W  H  C  L  L  R  V  W  L  L  A  L  N  H  Q  *  K  S  I  S  L  V  Q  L  M  S  L  L  R  I  R  T  W  L  L  T  K  I  I  S  S  C  T  A  Q  R  K  A  S  R  G  W  P  S  Q  L  L  D  R  V  V  *  L  L  C  P  G  K  G  A  W  C  S  R  V  C  L  L  W  I  L  L  *  L  Y  L  V  V  S  M  R  S  S  L  I  Q  E  V  *  G  A  C  Y  S  P  I  S  E  A  *  S  A  P  W  I  L  M  S  K  M  I  T  G  M  R  R  V  C  R  E  K  V  M  I  I  L  R  M  A  V  Q  I  L  M  T  I  Y  K  V  H  *  Y  H  V  K  Q  P  L  W  K  P  *  S  L  I  P  M  A  A  L  *  A  *  G  G  I  A  A  *  C  K  A  M  L  E  R  V  *  A  A  W  A  L  V  V  V  G  S  W  H  G  N  G  L  K  G  K  V  K  M  E  L  K  K  E  A  S  K  G  Y  I  C  I  R  R  R  A  L  A  L  D  V  G  L  S  F  Q  F  L  V  A  I  F  M  K  M  V  N  S  Y  K  L  R  L  W  *  V  S  L  Q  F  T  L  R  N  L  W  I  S  I  L  W  D  Q  Q  W  S  I  H  L  K  L  L  Q  K  V  R  V  G  L  L  F  L  N  Q  E  S  S  E  R  S  *  L  E  L  E  F  K  Y  C  N  S :   S  L  V  *  M  E  S  C  T  T  L  L  K  S  L  S  R  Q  V  *  E  F  F  F  L  T  L  A  S  H  Q  T  Q  H  P  S  S  S  V  R  *  Q  T  S  *  C  S  L  L  *  Q  L  Q  C  G  S  W  M  W  L  A  E   : G  R  C  C  C  T  L  F  L  F  S  Y  Y  H  S  S  V  L  S  L  V  T  L  S  T  W  G  V  *  L  M  Q  S  F  L  L  F  A  *  F  S  T  F  V  S  L  *  R  A  M  D  P  S  Q  I  S  S  A  Q  K  F  F  Q  L  G  F  V  V  C  A  S  P  S  V  L  S  S  S  G  Y  V  M  S  L  *  L  T  H  C  L  *  C  S  T  R  L  V  Y  L  A  C  L  V  F  M  P  L  S  V  S  F  L  G  F  S  S  S  *  G  F  P  K  P  K  A  C  P  *  K  S  L  Q  S  S  L  L  L  V  Q  D  K  L  L  L  S  Q  S  M  S  S  *  F  *  G  I  F  C  P  I  Y  Y  K  Y  V  V  K  F  V  E  N  K  K  M  L  S  S  L  G  V  L  H  F  T  S  I  W  Y  W  H  F  S  I  V  I  T  A  I  F  V  H  H  F  E  M  S  K  L </second_frame>
            <third_frame>   I  S  S  M  A  S  Q  *  R  K  N  G  R  G  K  T  S  F  A  E  I  A  W  H  R  G  C  F  R :   G  D  G  I  A  C  *  G  F  G  C  W  H  *  T  I  N  R  R  V  Y  H  W  S  S  *  *  A  Y  *  G  S  G  P  G  Y  *  Q  R  S  Y  Q  V  V  R  P  R  G  R  P  L  V  G  G  Q  A  S  Y  W  T  E  *  S  S  S  C  V  Q  A  R  E  H  G  A  A  E  C  A  S  Y  G  S  S  C  D  S  I  W  *  C  P  *  E  A  P  *  Y  R  K  Y  E  E  H  A  I  P  Q  F  R  K  H  D  Q  H  H  G  S  S  C  Q  R  *  S  L  G  *  G  E  S  A  E  R  R  *  *  L  S  F  G  W  R  C  R  F  *  *  Q  S  T  K  S  I  D  I  T  S  N  N  R  C  G  N  R  S  P  S  S  P  W  Q  H  Y  E  R  E  A  A  *  Q  P  N  A  R  Q  C  W  R  G  C  R  Q  H  G  H  W  W  W  L  A  V  G  M  E  M  V  *  K  G  R  *  R  W  N  *  R  R  R  L  Q  K  D  I  F  A  S  G  G  G  P  *  L  S  T  W  V  S  R  F  S  S  W  W  R  Y  S  *  R  W  *  I  H  T  S  C  G  F  G  K  S  A  C  S  L  L  *  G  T  Y  G  S  A  S  C  G  T  S  N  G  P  S  I  *  N  C  F  K  R  S  E  L  G  C  S  S  *  T  R  S  Q  A  S  A  H  S  W  N  W  N  S  N  I  A  T   : V  L  W  Y  K  W  S  H  V  L  H  S  S  N  P  *  A  G  R  C  R  S  S  S  F  *  L  W  H  R  I  R  L  S  I  L  P  H  Q  C  V  N  K  L  P  D  A  P  F  C  S  N  C  N  A  V  H  G  C  G  W  Q  K  :  V  A  A  A  V  H  Y  S  C  S  H  T  I  T  H  L  S  C  H  W  *  H  C  Q  P  G  E  C  S  S  C  S  R  F  Y  Y  L  R  D  S  L  L  L  F  L  C  D  G  L  W  T  H  P  K  Y  P  L  L  R  N  F  S  N  *  G  S  W  F  V  H  R  H  L  C  S  R  L  L  D  M  *  C  H  C  D  L  H  T  A  C  D  A  Q  L  D  W  F  I  W  R  V  W  Y  L  C  H  C  L  C  H  F  L  D  F  R  L  L  K  G  S  R  N  Q  R  H  A  L  R  S  H  Y  R  V  L  C  C  W  C  K  T  S  C  C  Y  R  K  A  *  V  V  S  F  K  V  S  S  V  R  F  T  T  S  M  *  *  N  L  *  K  I  K  K  C  Y  P  L  *  V  S  S  I  L  H  P  S  G  T  G  I  S  Q  *  L  L  L  L  Y  L  S  T  I  L  R  C  P  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87659" stop="87572"/>
                    <exon start="86867" stop="85927"/>
                    <exon start="85336" stop="85149"/>
                    <exon start="84464" stop="84017"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1662</number_coding_nucleotides>
                  <number_encoded_amino_acids>554</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESPRWLVSKGRMVEAKQVLQKLRGIEDVSGEMALLVEGLAVGIEPSIEEYIIGPADELTEDQDLATDKDHIKLYGPEEGLSWVAKPVTGQSSLALVSRQGSMVQQSVPLMDPLVTLFGSVHEKLPDTGSMRSMLFPNFGSMISTMDPHVKDDHWDEESLQREGDDYPSDGGADSDDNLQSPLISRQTTAVETVVPHPHGSTMSVRRHSSLMQGNAGEGVGSMGIGGGWQLAWKWSEREGEDGIKEGGFKRIYLHQEAGPSSRRGSLVSVPGGDIHEDGEFIQAAALVSQPAVYSKELMDQHPVGPAMVHPSETASKGPSWAALLEPGVKRALIVGIGIQILQQFSGINGVMYYTPQILEQAGVGVLLSNFGIASDSASFLISALTNFLMLPSVAIAMRFMDVAGRRSLLLYTIPVLILSLICLVIGNTVNLGSVAHAVVSTICVILYFCFFVTGYGPIPNILCSEIFPTRVRGLCIAICALVFWICDVIVTYTLPVMLNSIGLSGVFGIYAIVCVISWIFVFLRVPETKGMPLEVITEFFAVGARQAAAIAKHE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="93876" PGL_stop="94516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="93876" e_stop="94367"/>
            <exon e_start="94434" e_stop="94516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="93876" e_stop="94367" e_length="492"/>
          </exon>
          <intron i_serial="1" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="94368" i_stop="94433" i_length="66"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="94434" e_stop="94516" e_length="83"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="93876" stop="94367"/>
              <exon start="94434" stop="94516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACGAACGAACATGGCTCTTTTCTCTTTTACAAAATTTTCACTACTTGTTTTATTTTCAATTTCTCTCCTGGCCTGCACCTCATTGGCTCGCGATCATTCCATCGTTGGATACTCCTCTGATGACTTGACTTGCATCGATAAGCTCATAAATCTCTTTGATAAATGGATGGATAAACATGGAAAGATTTATAAGAGCATTGAAGAGAAATTACATAGGTTTGAGATTTTCAAGGAAAATTTGAAGCATATTGATGAAAGGAATAAAATGGTTACCAACTATTGGCTTGGTCTAAATGAGTTCTCTGATTTGAGCCATGATGAGTTTAAGGAAATGTATTTAGGACTGAAAGTTGATCAAGAGTTGCTTAATAAAAGAGAGAAATTATCTCAAGAAGAATTTGCGTATAGAGATTTTGTTGATTTGCCTAAGTCTGTGGATTGGAGGAAAAAAGGTGCTGTTACCCCTGTGAAGAACCAGGGTCAATGTG : GGAGTTGTTGGGCATTTTCAACGGTGGCTGCAGTAGAGGGAATTAACCAAATAAAAACAGGGAATTTGACATCCTTGTCTGAA</gDNA_template>
            <first_frame> K  N  E  R  T  W  L  F  S  L  L  Q  N  F  H  Y  L  F  Y  F  Q  F  L  S  W  P  A  P  H  W  L  A  I  I  P  S  L  D  T  P  L  M  T  *  L  A  S  I  S  S  *  I  S  L  I  N  G  W  I  N  M  E  R  F  I  R  A  L  K  R  N  Y  I  G  L  R  F  S  R  K  I  *  S  I  L  M  K  G  I  K  W  L  P  T  I  G  L  V  *  M  S  S  L  I  *  A  M  M  S  L  R  K  C  I  *  D  *  K  L  I  K  S  C  L  I  K  E  R  N  Y  L  K  K  N  L  R  I  E  I  L  L  I  C  L  S  L  W  I  G  G  K  K  V  L  L  P  L  *  R  T  R  V  N  V  :  G  V  V  G  H  F  Q  R  W  L  Q  *  R  E  L  T  K  *  K  Q  G  I  *  H  P  C  L   </first_frame>
            <second_frame>  K  T  N  E  H  G  S  F  L  F  Y  K  I  F  T  T  C  F  I  F  N  F  S  P  G  L  H  L  I  G  S  R  S  F  H  R  W  I  L  L  *  *  L  D  L  H  R  *  A  H  K  S  L  *  *  M  D  G  *  T  W  K  D  L  *  E  H  *  R  E  I  T  *  V  *  D  F  Q  G  K  F  E  A  Y  *  *  K  E  *  N  G  Y  Q  L  L  A  W  S  K  *  V  L  *  F  E  P  *  *  V  *  G  N  V  F  R  T  E  S  *  S  R  V  A  *  *  K  R  E  I  I  S  R  R  I  C  V  *  R  F  C  *  F  A  *  V  C  G  L  E  E  K  R  C  C  Y  P  C  E  E  P  G  S  M  W :   E  L  L  G  I  F  N  G  G  C  S  R  G  N  *  P  N  K  N  R  E  F  D  I  L  V  *  </second_frame>
            <third_frame>   K  R  T  N  M  A  L  F  S  F  T  K  F  S  L  L  V  L  F  S  I  S  L  L  A  C  T  S  L  A  R  D  H  S  I  V  G  Y  S  S  D  D  L  T  C  I  D  K  L  I  N  L  F  D  K  W  M  D  K  H  G  K  I  Y  K  S  I  E  E  K  L  H  R  F  E  I  F  K  E  N  L  K  H  I  D  E  R  N  K  M  V  T  N  Y  W  L  G  L  N  E  F  S  D  L  S  H  D  E  F  K  E  M  Y  L  G  L  K  V  D  Q  E  L  L  N  K  R  E  K  L  S  Q  E  E  F  A  Y  R  D  F  V  D  L  P  K  S  V  D  W  R  K  K  G  A  V  T  P  V  K  N  Q  G  Q  C   : G  S  C  W  A  F  S  T  V  A  A  V  E  G  I  N  Q  I  K  T  G  N  L  T  S  L  S  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93878" stop="94367"/>
                    <exon start="94434" stop="94516"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTNMALFSFTKFSLLVLFSISLLACTSLARDHSIVGYSSDDLTCIDKLINLFDKWMDKHGKIYKSIEEKLHRFEIFKENLKHIDERNKMVTNYWLGLNEFSDLSHDEFKEMYLGLKVDQELLNKREKLSQEEFAYRDFVDLPKSVDWRKKGAVTPVKNQGQCGSCWAFSTVAAVEGINQIKTGNLTSLSE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="98850" PGL_stop="95977"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98850" e_stop="98791"/>
            <exon e_start="97304" e_stop="97111"/>
            <exon e_start="96499" e_stop="95977"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.827" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="98850" e_stop="98791" e_length="60"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.827">
            <gDNA_intron_boundary i_start="98790" i_stop="97305" i_length="1486"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97304" e_stop="97111" e_length="194"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97110" i_stop="96500" i_length="611"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="96499" e_stop="95977" e_length="523"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98850" stop="98791"/>
              <exon start="97304" stop="97111"/>
              <exon start="96499" stop="95977"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326827" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTAGAGCGGCGTTCAATTTTGGCTACGAATCTCTTCAAAGGAGAGGGCTTCAGTGAG : GGAGCTTACTTGCTTGGTACAGCTGTAAAACATGAATCCAAATGAATCTGCAAAGTCTCATGCCAAACCCGATATCATTCTGACTGGGACTGCAAAAACATGTCCAATTGGACCGCCACTTGGTTTGGTTGACATAGGCAGTAGTGATAATGCATATATTTTTCGTGTTGCGCTTCCTGGTGTAAGGCATAAAT : GTAATATCCAATTTGACATACAGAGAGAAGGGAGAGTCCGGATAGAAGGTGTGATTACAGAGAGTGAGGCTTTGAAAAACTCACTCAAGGGTTATGAGATGAAAGTTCAGCAGCTTCCTTCCCCTGGGCCTTTTACCATATCGTTCAATTTGCCAGGACCTGTTGATCCCAGATTATGTTCCCCGCAGTTTAGAACCGATGGCATTTTGGAAGTCATTGTGATGAAATATCAGATACCTTTGGTTTCAGCAGAAGGTTTGCCTGAGAATTGGTACAATGGCTCTTTCCCAGCTCCTTGAATTCTATTTGGTCCACAATCCCTATGACACATGAGAATCCTACTTACTCTACAACTCTTGTATTGAATATAACATGGCATCAGCAACGACTTCTCAACTTCTAGGTAGCCATACCTGTACACCAAGGGATTTTGCATTATATGTTCCATTTTGGCAATGTTGACTTGTTTTTTGAATCAACTGTACTTTATGGCAAAAAAAAAAAAAACTTGGGAGCATTGACA</gDNA_template>
            <first_frame> E  V  E  R  R  S  I  L  A  T  N  L  F  K  G  E  G  F  S  E  :  G  A  Y  L  L  G  T  A  V  K  H  E  S  K  *  I  C  K  V  S  C  Q  T  R  Y  H  S  D  W  D  C  K  N  M  S  N  W  T  A  T  W  F  G  *  H  R  Q  *  *  *  C  I  Y  F  S  C  C  A  S  W  C  K  A  *  M :   *  Y  P  I  *  H  T  E  R  R  E  S  P  D  R  R  C  D  Y  R  E  *  G  F  E  K  L  T  Q  G  L  *  D  E  S  S  A  A  S  F  P  W  A  F  Y  H  I  V  Q  F  A  R  T  C  *  S  Q  I  M  F  P  A  V  *  N  R  W  H  F  G  S  H  C  D  E  I  S  D  T  F  G  F  S  R  R  F  A  *  E  L  V  Q  W  L  F  P  S  S  L  N  S  I  W  S  T  I  P  M  T  H  E  N  P  T  Y  S  T  T  L  V  L  N  I  T  W  H  Q  Q  R  L  L  N  F  *  V  A  I  P  V  H  Q  G  I  L  H  Y  M  F  H  F  G  N  V  D  L  F  F  E  S  T  V  L  Y  G  K  K  K  K  N  L  G  A  L  T </first_frame>
            <second_frame>  K  *  S  G  V  Q  F  W  L  R  I  S  S  K  E  R  A  S  V  R :   E  L  T  C  L  V  Q  L  *  N  M  N  P  N  E  S  A  K  S  H  A  K  P  D  I  I  L  T  G  T  A  K  T  C  P  I  G  P  P  L  G  L  V  D  I  G  S  S  D  N  A  Y  I  F  R  V  A  L  P  G  V  R  H  K   : C  N  I  Q  F  D  I  Q  R  E  G  R  V  R  I  E  G  V  I  T  E  S  E  A  L  K  N  S  L  K  G  Y  E  M  K  V  Q  Q  L  P  S  P  G  P  F  T  I  S  F  N  L  P  G  P  V  D  P  R  L  C  S  P  Q  F  R  T  D  G  I  L  E  V  I  V  M  K  Y  Q  I  P  L  V  S  A  E  G  L  P  E  N  W  Y  N  G  S  F  P  A  P  *  I  L  F  G  P  Q  S  L  *  H  M  R  I  L  L  T  L  Q  L  L  Y  *  I  *  H  G  I  S  N  D  F  S  T  S  R  *  P  Y  L  Y  T  K  G  F  C  I  I  C  S  I  L  A  M  L  T  C  F  L  N  Q  L  Y  F  M  A  K  K  K  K  T  W  E  H  *   </second_frame>
            <third_frame>   S  R  A  A  F  N  F  G  Y  E  S  L  Q  R  R  G  L  Q  *   : G  S  L  L  A  W  Y  S  C  K  T  *  I  Q  M  N  L  Q  S  L  M  P  N  P  I  S  F  *  L  G  L  Q  K  H  V  Q  L  D  R  H  L  V  W  L  T  *  A  V  V  I  M  H  I  F  F  V  L  R  F  L  V  *  G  I  N  :  V  I  S  N  L  T  Y  R  E  K  G  E  S  G  *  K  V  *  L  Q  R  V  R  L  *  K  T  H  S  R  V  M  R  *  K  F  S  S  F  L  P  L  G  L  L  P  Y  R  S  I  C  Q  D  L  L  I  P  D  Y  V  P  R  S  L  E  P  M  A  F  W  K  S  L  *  *  N  I  R  Y  L  W  F  Q  Q  K  V  C  L  R  I  G  T  M  A  L  S  Q  L  L  E  F  Y  L  V  H  N  P  Y  D  T  *  E  S  Y  L  L  Y  N  S  C  I  E  Y  N  M  A  S  A  T  T  S  Q  L  L  G  S  H  T  C  T  P  R  D  F  A  L  Y  V  P  F  W  Q  C  *  L  V  F  *  I  N  C  T  L  W  Q  K  K  K  K  L  G  S  I  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97276" stop="97111"/>
                    <exon start="96499" stop="96201"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMNPNESAKSHAKPDIILTGTAKTCPIGPPLGLVDIGSSDNAYIFRVALPGVRHKCNIQFDIQREGRVRIEGVITESEALKNSLKGYEMKVQQLPSPGPFTISFNLPGPVDPRLCSPQFRTDGILEVIVMKYQIPLVSAEGLPENWYNGSFPAP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="-" PGL_start="99748" PGL_stop="99199"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="99748" e_stop="99199"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="99748" e_stop="99199" e_length="550"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99748" stop="99199"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGATGGAAGCAACTTTGTTTTCCCCTGCGCGCTGCAAAGGTGAATTTTATATGCACCATTATAGTAGCTTTGAGGCTGATTCAAGCGTAAAAAACTAATCAGATGTCCGAGTTCTTCGATTAGGCCTTCAGTGCCTGCTCTGTTTGTACCAGCCAATTGGAGGCAAGAAGCTGATGATACTTTGGAGGATTCCTTCGTCACCTTCACTTGAAAATTTTGACTTTCTTATTGCTCTTTGTAAAGGAACACATTGATTACACAGGGTATATTGAACGGATCAAGGTGTTTTTTGTCCCAAACAGACTTGAGGTGGTTCCAGTTTTGTACGTGGACATGGTTAGCTTGTAATCATCATTAAAACCAAATTCCTATTCTGAAAAATCCCTACTTATAACTCTTGTATGTATCTTTCTTTTTTGCATAAATTCAGCTGAGGCTATCTGGAACTCTTGTAATCAGTCAATTTCTGTTGCTTTTGATATATAATAGTGGAACTTTTGCGTTAAGTTGGTTACTTGGGTCATTCAATGAAATTCTTACTATGAGGCC</gDNA_template>
            <first_frame> L  M  E  A  T  L  F  S  P  A  R  C  K  G  E  F  Y  M  H  H  Y  S  S  F  E  A  D  S  S  V  K  N  *  S  D  V  R  V  L  R  L  G  L  Q  C  L  L  C  L  Y  Q  P  I  G  G  K  K  L  M  I  L  W  R  I  P  S  S  P  S  L  E  N  F  D  F  L  I  A  L  C  K  G  T  H  *  L  H  R  V  Y  *  T  D  Q  G  V  F  C  P  K  Q  T  *  G  G  S  S  F  V  R  G  H  G  *  L  V  I  I  I  K  T  K  F  L  F  *  K  I  P  T  Y  N  S  C  M  Y  L  S  F  L  H  K  F  S  *  G  Y  L  E  L  L  *  S  V  N  F  C  C  F  *  Y  I  I  V  E  L  L  R  *  V  G  Y  L  G  H  S  M  K  F  L  L  *  G  </first_frame>
            <second_frame>  *  W  K  Q  L  C  F  P  L  R  A  A  K  V  N  F  I  C  T  I  I  V  A  L  R  L  I  Q  A  *  K  T  N  Q  M  S  E  F  F  D  *  A  F  S  A  C  S  V  C  T  S  Q  L  E  A  R  S  *  *  Y  F  G  G  F  L  R  H  L  H  L  K  I  L  T  F  L  L  L  F  V  K  E  H  I  D  Y  T  G  Y  I  E  R  I  K  V  F  F  V  P  N  R  L  E  V  V  P  V  L  Y  V  D  M  V  S  L  *  S  S  L  K  P  N  S  Y  S  E  K  S  L  L  I  T  L  V  C  I  F  L  F  C  I  N  S  A  E  A  I  W  N  S  C  N  Q  S  I  S  V  A  F  D  I  *  *  W  N  F  C  V  K  L  V  T  W  V  I  Q  *  N  S  Y  Y  E  A </second_frame>
            <third_frame>   D  G  S  N  F  V  F  P  C  A  L  Q  R  *  I  L  Y  A  P  L  *  *  L  *  G  *  F  K  R  K  K  L  I  R  C  P  S  S  S  I  R  P  S  V  P  A  L  F  V  P  A  N  W  R  Q  E  A  D  D  T  L  E  D  S  F  V  T  F  T  *  K  F  *  L  S  Y  C  S  L  *  R  N  T  L  I  T  Q  G  I  L  N  G  S  R  C  F  L  S  Q  T  D  L  R  W  F  Q  F  C  T  W  T  W  L  A  C  N  H  H  *  N  Q  I  P  I  L  K  N  P  Y  L  *  L  L  Y  V  S  F  F  F  A  *  I  Q  L  R  L  S  G  T  L  V  I  S  Q  F  L  L  L  L  I  Y  N  S  G  T  F  A  L  S  W  L  L  G  S  F  N  E  I  L  T  M  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0289C05.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="24" PGL_strand="-" PGL_start="106028" PGL_stop="103169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106028" e_stop="105968"/>
            <exon e_start="105014" e_stop="104572"/>
            <exon e_start="103509" e_stop="103169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.697" acc_prob="0.637" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106028" e_stop="105968" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.697" acc_prob="0.637">
            <gDNA_intron_boundary i_start="105967" i_stop="105015" i_length="953"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="105014" e_stop="104572" e_length="443"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.999">
            <gDNA_intron_boundary i_start="104571" i_stop="103510" i_length="1062"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="103509" e_stop="103169" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106028" stop="105968"/>
              <exon start="105014" stop="104572"/>
              <exon start="103509" stop="103169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="24" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGCATAAAACATGGCTGTTGCAACATAAAGTTTGAAAAAGCTTGGGTGTTCAATGAATAGG : AATTAGTTTTGGAGTTGGATAACTGTTGAATGCTTACAGTATGTTTCTGATGAAAGATATGGTGAACATGGAAAGTCAGTAAATGTCAAACATGGAATGCTTACATCCTAAAAAGAAGATTAAGAGAATACTTTGGAAGCGGTCCAAGGAGAAATCGAATGGGGAAGACTCTGCTGGAAATGGTACATCATTGATGAAGATGGAACACAATGTGACAAAGAGGCATCATTCTGATTCAATGACCAGTGGTGTAGACAGGCCTTGCATGATGTCACTTCTCCCTCTTCCCAACTTGGAATATTGTAACTCGGGGGGCCCTGCTATCTTGACAGGAACGGCATGCAAAGGGGTAGCTGGACCACCTGTTGGAGTTGTTGATATCGGTGTTAGCATATCTGCTTACTATTTTCGTATTGCTCTACCTGGAGTCAAGAAAGATCCTG : GTGAGTTCAACTGTGAGATTGAAAAAGATGGGAAGGTCCTTATTCGGGGGGTGACATCAACTGGTGGAAGAACCGTATCAAGATATTCTCGGGTCTTTGATATGAAAATTCAGCAACAATGTCCATCTGGTCCTTTCACCGTCTCCTTTCGTTTGCCCGGGCCTGTCGATCCGAGGTTGTTTTCACCAAATTTCAGATCAGATGGCATTTTTGAAGCTGTTGTAATGAAATACGAGCAGTAGCTAGTTCATGTAAACAACCATTAAAGTCAGAACCCACCACAGAAAGCTGTCTGCTCTTGGATTTCTTGTTATGATTAGTGGTGGGCTGAAGGCTAATGT</gDNA_template>
            <first_frame> C  I  K  H  G  C  C  N  I  K  F  E  K  A  W  V  F  N  E  *   : E  L  V  L  E  L  D  N  C  *  M  L  T  V  C  F  *  *  K  I  W  *  T  W  K  V  S  K  C  Q  T  W  N  A  Y  I  L  K  R  R  L  R  E  Y  F  G  S  G  P  R  R  N  R  M  G  K  T  L  L  E  M  V  H  H  *  *  R  W  N  T  M  *  Q  R  G  I  I  L  I  Q  *  P  V  V  *  T  G  L  A  *  C  H  F  S  L  F  P  T  W  N  I  V  T  R  G  A  L  L  S  *  Q  E  R  H  A  K  G  *  L  D  H  L  L  E  L  L  I  S  V  L  A  Y  L  L  T  I  F  V  L  L  Y  L  E  S  R  K  I  L  :  V  S  S  T  V  R  L  K  K  M  G  R  S  L  F  G  G  *  H  Q  L  V  E  E  P  Y  Q  D  I  L  G  S  L  I  *  K  F  S  N  N  V  H  L  V  L  S  P  S  P  F  V  C  P  G  L  S  I  R  G  C  F  H  Q  I  S  D  Q  M  A  F  L  K  L  L  *  *  N  T  S  S  S  *  F  M  *  T  T  I  K  V  R  T  H  H  R  K  L  S  A  L  G  F  L  V  M  I  S  G  G  L  K  A  N   </first_frame>
            <second_frame>  A  *  N  M  A  V  A  T  *  S  L  K  K  L  G  C  S  M  N  R  :  N  *  F  W  S  W  I  T  V  E  C  L  Q  Y  V  S  D  E  R  Y  G  E  H  G  K  S  V  N  V  K  H  G  M  L  T  S  *  K  E  D  *  E  N  T  L  E  A  V  Q  G  E  I  E  W  G  R  L  C  W  K  W  Y  I  I  D  E  D  G  T  Q  C  D  K  E  A  S  F  *  F  N  D  Q  W  C  R  Q  A  L  H  D  V  T  S  P  S  S  Q  L  G  I  L  *  L  G  G  P  C  Y  L  D  R  N  G  M  Q  R  G  S  W  T  T  C  W  S  C  *  Y  R  C  *  H  I  C  L  L  F  S  Y  C  S  T  W  S  Q  E  R  S  W :   *  V  Q  L  *  D  *  K  R  W  E  G  P  Y  S  G  G  D  I  N  W  W  K  N  R  I  K  I  F  S  G  L  *  Y  E  N  S  A  T  M  S  I  W  S  F  H  R  L  L  S  F  A  R  A  C  R  S  E  V  V  F  T  K  F  Q  I  R  W  H  F  *  S  C  C  N  E  I  R  A  V  A  S  S  C  K  Q  P  L  K  S  E  P  T  T  E  S  C  L  L  L  D  F  L  L  *  L  V  V  G  *  R  L  M  </second_frame>
            <third_frame>   H  K  T  W  L  L  Q  H  K  V  *  K  S  L  G  V  Q  *  I  G :   I  S  F  G  V  G  *  L  L  N  A  Y  S  M  F  L  M  K  D  M  V  N  M  E  S  Q  *  M  S  N  M  E  C  L  H  P  K  K  K  I  K  R  I  L  W  K  R  S  K  E  K  S  N  G  E  D  S  A  G  N  G  T  S  L  M  K  M  E  H  N  V  T  K  R  H  H  S  D  S  M  T  S  G  V  D  R  P  C  M  M  S  L  L  P  L  P  N  L  E  Y  C  N  S  G  G  P  A  I  L  T  G  T  A  C  K  G  V  A  G  P  P  V  G  V  V  D  I  G  V  S  I  S  A  Y  Y  F  R  I  A  L  P  G  V  K  K  D  P   : G  E  F  N  C  E  I  E  K  D  G  K  V  L  I  R  G  V  T  S  T  G  G  R  T  V  S  R  Y  S  R  V  F  D  M  K  I  Q  Q  Q  C  P  S  G  P  F  T  V  S  F  R  L  P  G  P  V  D  P  R  L  F  S  P  N  F  R  S  D  G  I  F  E  A  V  V  M  K  Y  E  Q  *  L  V  H  V  N  N  H  *  S  Q  N  P  P  Q  K  A  V  C  S  W  I  S  C  Y  D  *  W  W  A  E  G  *  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="-"/>
                <serials PGL_serial="24" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104932" stop="104572"/>
                    <exon start="103509" stop="103268"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>600</number_coding_nucleotides>
                  <number_encoded_amino_acids>200</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MSNMECLHPKKKIKRILWKRSKEKSNGEDSAGNGTSLMKMEHNVTKRHHSDSMTSGVDRPCMMSLLPLPNLEYCNSGGPAILTGTACKGVAGPPVGVVDIGVSISAYYFRIALPGVKKDPGEFNCEIEKDGKVLIRGVTSTGGRTVSRYSRVFDMKIQQQCPSGPFTVSFRLPGPVDPRLFSPNFRSDGIFEAVVMKYEQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="25" PGL_strand="+" PGL_start="109810" PGL_stop="112773"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109810" e_stop="110012"/>
            <exon e_start="110269" e_stop="110611"/>
            <exon e_start="111082" e_stop="111353"/>
            <exon e_start="111580" e_stop="111776"/>
            <exon e_start="112201" e_stop="112773"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.996" acc_prob="0.993" e_score="0.995"/>
          <exon-intron don_prob="1.000" acc_prob="0.983" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="109810" e_stop="110012" e_length="203"/>
          </exon>
          <intron i_serial="1" don_prob="0.996" acc_prob="0.993">
            <gDNA_intron_boundary i_start="110013" i_stop="110268" i_length="256"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="110269" e_stop="110611" e_length="343"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.983">
            <gDNA_intron_boundary i_start="110612" i_stop="111081" i_length="470"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111082" e_stop="111353" e_length="272"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.992">
            <gDNA_intron_boundary i_start="111354" i_stop="111579" i_length="226"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="111580" e_stop="111776" e_length="197"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="111777" i_stop="112200" i_length="424"/>
          </intron>
          <exon e_serial="5" e_score="0.986">
            <gDNA_exon_boundary e_start="112201" e_stop="112773" e_length="573"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109810" stop="110012"/>
              <exon start="110269" stop="110611"/>
              <exon start="111082" stop="111294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327344" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111285" stop="111353"/>
              <exon start="111580" stop="111776"/>
              <exon start="112201" stop="112773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U327132" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111285" stop="111353"/>
              <exon start="111580" stop="111776"/>
              <exon start="112201" stop="112470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U338442" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="25" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAGGAGAGAAAAATGCATCTGAGCGAAAACGAAGGGATAGAGAAGAAGAGTTTCGTGGTTACTGGTGGACTTGGTTTTATAGGCGCCGCACTTTGTGTTGAACTCGTCAGAAGGGGTGCTCGTCTTGTCAAAGCATTTGATCTTAGAACCCATTCTCCTTGGTCATCTCAACTCCGTCAATGTGGGGTTCAAATCATTCAAG : GGGATATAACAGACAAACAACAAGTCCAGAAAGCACTACAAGGGTCAGATTGTGTTTTCCATCTTGCTTCTTATGGCATGTCCGGGAAAGAAATGCTTCAGTATAGTCGTGTTGATGAGGTTAATATTAATGGAACCTGCCACATTATTGATGCTTGCCTTCACCATCACATTAAGAGGCTTGTTTATGTCAGCACACCTAATGTTGTTTATGGTGGTAAGGAAATTCTTAATGGCAATGAGAACCTACCTTATTTCCCAATAGATGACCATGTTGATCCATATGGACGAAGCAAATCAATTGCTGAACAATTGGTCCTAAAGAGCAACCGTCGTCCCTTCAC : TAAGAACAATGGTGAATGCCTTTACACCTGCGCAATTCGTCCAGCTGCTATATATGGTCCAGGTGAAGAAAGGCACCTGCCAAGGATCATAACTCTTACAAAGCTAGGTCTGTTTCCCTTTAAAATCGGTTCACCAAATGTAAAATCAGATTGGGTGTACGTCGACAATCTTGTATTGGCGCTTTTATTGGCTAGCATGGGACTTTTGGATGACATCCCTGGCAGAGAAGGGCATCCAATTGCTGCTGGTCAACCTTATTTTATATCAGATG : GTTCTCCTATCAACAGTTTCGAGTTCCTTCGCCCTTTACTGAAAAGCCTGGATTATGATCTACCAAAGACATCACTAGCTGTCTCTCATGCACTTCTTCTGGGAAGAATTTTCTGGGCTTTCTACTCCTTTCTGTATCCTTGGTTGAATAGTAGGTGGCTTCCTCAACCTCTGATCCTTCCTGCTGAAGTCTACAAG : GTTGGTGTCACTCATTACTTCTCTTTCCTAAAAGCAAAAGAGGAACTTGGTTACGTCCCAATGGTAAGTTCTAAGGAGGGCATGGCAGCAACAATTGCATATTGGCAAGAAAGAAAACGTAGGAGTTTGGACGGACCTACAATATGGGCATGGCTGTTTTGTGTAATTGGAATGTTGGGGTTGTTTGCTGCTGCATATCTGCCCGACTATGGACCCATTCCCTTAATTAGAGCAGTTCATCTCTTCTTCTTTCGCTCTATATTGGCGTTGAAAGTGATATTTGTTCTAGCAGCTGCTGCACATGTAGGTGAAGCTATATATGCATGGAATGTTGCAAAAACAATAGATCCTGCAAATGCAAGAGGATGGTTTTGGCAGACATTTGCTTTGGGGATATTTTCCCTACGATTACTTCTGAAGAGAGCTAAAAAGTAGGGATCAGCGGCCATATTTCTCTTTTAAAAAAATATGAAGGTTTTTTTTTATAATAAACGAGTTTAACTTGTGATCCTAATCTTGTACTGCTTTGCATCTCCTGGACTGGATTGTCCAAGAAAATCAAGGAAATTGAAG</gDNA_template>
            <first_frame> E  G  E  K  N  A  S  E  R  K  R  R  D  R  E  E  E  F  R  G  Y  W  W  T  W  F  Y  R  R  R  T  L  C  *  T  R  Q  K  G  C  S  S  C  Q  S  I  *  S  *  N  P  F  S  L  V  I  S  T  P  S  M  W  G  S  N  H  S  R :   G  Y  N  R  Q  T  T  S  P  E  S  T  T  R  V  R  L  C  F  P  S  C  F  L  W  H  V  R  E  R  N  A  S  V  *  S  C  *  *  G  *  Y  *  W  N  L  P  H  Y  *  C  L  P  S  P  S  H  *  E  A  C  L  C  Q  H  T  *  C  C  L  W  W  *  G  N  S  *  W  Q  *  E  P  T  L  F  P  N  R  *  P  C  *  S  I  W  T  K  Q  I  N  C  *  T  I  G  P  K  E  Q  P  S  S  L  H  :  *  E  Q  W  *  M  P  L  H  L  R  N  S  S  S  C  Y  I  W  S  R  *  R  K  A  P  A  K  D  H  N  S  Y  K  A  R  S  V  S  L  *  N  R  F  T  K  C  K  I  R  L  G  V  R  R  Q  S  C  I  G  A  F  I  G  *  H  G  T  F  G  *  H  P  W  Q  R  R  A  S  N  C  C  W  S  T  L  F  Y  I  R  W :   F  S  Y  Q  Q  F  R  V  P  S  P  F  T  E  K  P  G  L  *  S  T  K  D  I  T  S  C  L  S  C  T  S  S  G  K  N  F  L  G  F  L  L  L  S  V  S  L  V  E  *  *  V  A  S  S  T  S  D  P  S  C  *  S  L  Q   : G  W  C  H  S  L  L  L  F  P  K  S  K  R  G  T  W  L  R  P  N  G  K  F  *  G  G  H  G  S  N  N  C  I  L  A  R  K  K  T  *  E  F  G  R  T  Y  N  M  G  M  A  V  L  C  N  W  N  V  G  V  V  C  C  C  I  S  A  R  L  W  T  H  S  L  N  *  S  S  S  S  L  L  L  S  L  Y  I  G  V  E  S  D  I  C  S  S  S  C  C  T  C  R  *  S  Y  I  C  M  E  C  C  K  N  N  R  S  C  K  C  K  R  M  V  L  A  D  I  C  F  G  D  I  F  P  T  I  T  S  E  E  S  *  K  V  G  I  S  G  H  I  S  L  L  K  K  Y  E  G  F  F  L  *  *  T  S  L  T  C  D  P  N  L  V  L  L  C  I  S  W  T  G  L  S  K  K  I  K  E  I  E  </first_frame>
            <second_frame>  K  E  R  K  M  H  L  S  E  N  E  G  I  E  K  K  S  F  V  V  T  G  G  L  G  F  I  G  A  A  L  C  V  E  L  V  R  R  G  A  R  L  V  K  A  F  D  L  R  T  H  S  P  W  S  S  Q  L  R  Q  C  G  V  Q  I  I  Q   : G  D  I  T  D  K  Q  Q  V  Q  K  A  L  Q  G  S  D  C  V  F  H  L  A  S  Y  G  M  S  G  K  E  M  L  Q  Y  S  R  V  D  E  V  N  I  N  G  T  C  H  I  I  D  A  C  L  H  H  H  I  K  R  L  V  Y  V  S  T  P  N  V  V  Y  G  G  K  E  I  L  N  G  N  E  N  L  P  Y  F  P  I  D  D  H  V  D  P  Y  G  R  S  K  S  I  A  E  Q  L  V  L  K  S  N  R  R  P  F  T :   K  N  N  G  E  C  L  Y  T  C  A  I  R  P  A  A  I  Y  G  P  G  E  E  R  H  L  P  R  I  I  T  L  T  K  L  G  L  F  P  F  K  I  G  S  P  N  V  K  S  D  W  V  Y  V  D  N  L  V  L  A  L  L  L  A  S  M  G  L  L  D  D  I  P  G  R  E  G  H  P  I  A  A  G  Q  P  Y  F  I  S  D   : G  S  P  I  N  S  F  E  F  L  R  P  L  L  K  S  L  D  Y  D  L  P  K  T  S  L  A  V  S  H  A  L  L  L  G  R  I  F  W  A  F  Y  S  F  L  Y  P  W  L  N  S  R  W  L  P  Q  P  L  I  L  P  A  E  V  Y  K  :  V  G  V  T  H  Y  F  S  F  L  K  A  K  E  E  L  G  Y  V  P  M  V  S  S  K  E  G  M  A  A  T  I  A  Y  W  Q  E  R  K  R  R  S  L  D  G  P  T  I  W  A  W  L  F  C  V  I  G  M  L  G  L  F  A  A  A  Y  L  P  D  Y  G  P  I  P  L  I  R  A  V  H  L  F  F  F  R  S  I  L  A  L  K  V  I  F  V  L  A  A  A  A  H  V  G  E  A  I  Y  A  W  N  V  A  K  T  I  D  P  A  N  A  R  G  W  F  W  Q  T  F  A  L  G  I  F  S  L  R  L  L  L  K  R  A  K  K  *  G  S  A  A  I  F  L  F  *  K  N  M  K  V  F  F  Y  N  K  R  V  *  L  V  I  L  I  L  Y  C  F  A  S  P  G  L  D  C  P  R  K  S  R  K  L  K </second_frame>
            <third_frame>   R  R  E  K  C  I  *  A  K  T  K  G  *  R  R  R  V  S  W  L  L  V  D  L  V  L  *  A  P  H  F  V  L  N  S  S  E  G  V  L  V  L  S  K  H  L  I  L  E  P  I  L  L  G  H  L  N  S  V  N  V  G  F  K  S  F  K  :  G  I  *  Q  T  N  N  K  S  R  K  H  Y  K  G  Q  I  V  F  S  I  L  L  L  M  A  C  P  G  K  K  C  F  S  I  V  V  L  M  R  L  I  L  M  E  P  A  T  L  L  M  L  A  F  T  I  T  L  R  G  L  F  M  S  A  H  L  M  L  F  M  V  V  R  K  F  L  M  A  M  R  T  Y  L  I  S  Q  *  M  T  M  L  I  H  M  D  E  A  N  Q  L  L  N  N  W  S  *  R  A  T  V  V  P  S   : L  R  T  M  V  N  A  F  T  P  A  Q  F  V  Q  L  L  Y  M  V  Q  V  K  K  G  T  C  Q  G  S  *  L  L  Q  S  *  V  C  F  P  L  K  S  V  H  Q  M  *  N  Q  I  G  C  T  S  T  I  L  Y  W  R  F  Y  W  L  A  W  D  F  W  M  T  S  L  A  E  K  G  I  Q  L  L  L  V  N  L  I  L  Y  Q  M  :  V  L  L  S  T  V  S  S  S  F  A  L  Y  *  K  A  W  I  M  I  Y  Q  R  H  H  *  L  S  L  M  H  F  F  W  E  E  F  S  G  L  S  T  P  F  C  I  L  G  *  I  V  G  G  F  L  N  L  *  S  F  L  L  K  S  T  R :   L  V  S  L  I  T  S  L  S  *  K  Q  K  R  N  L  V  T  S  Q  W  *  V  L  R  R  A  W  Q  Q  Q  L  H  I  G  K  K  E  N  V  G  V  W  T  D  L  Q  Y  G  H  G  C  F  V  *  L  E  C  W  G  C  L  L  L  H  I  C  P  T  M  D  P  F  P  *  L  E  Q  F  I  S  S  S  F  A  L  Y  W  R  *  K  *  Y  L  F  *  Q  L  L  H  M  *  V  K  L  Y  M  H  G  M  L  Q  K  Q  *  I  L  Q  M  Q  E  D  G  F  G  R  H  L  L  W  G  Y  F  P  Y  D  Y  F  *  R  E  L  K  S  R  D  Q  R  P  Y  F  S  F  K  K  I  *  R  F  F  F  I  I  N  E  F  N  L  *  S  *  S  C  T  A  L  H  L  L  D  W  I  V  Q  E  N  Q  G  N  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0289C05.1" strand="+"/>
                <serials PGL_serial="25" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109811" stop="110012"/>
                    <exon start="110269" stop="110611"/>
                    <exon start="111082" stop="111353"/>
                    <exon start="111580" stop="111776"/>
                    <exon start="112201" stop="112635"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1446</number_coding_nucleotides>
                  <number_encoded_amino_acids>482</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KERKMHLSENEGIEKKSFVVTGGLGFIGAALCVELVRRGARLVKAFDLRTHSPWSSQLRQCGVQIIQGDITDKQQVQKALQGSDCVFHLASYGMSGKEMLQYSRVDEVNINGTCHIIDACLHHHIKRLVYVSTPNVVYGGKEILNGNENLPYFPIDDHVDPYGRSKSIAEQLVLKSNRRPFTKNNGECLYTCAIRPAAIYGPGEERHLPRIITLTKLGLFPFKIGSPNVKSDWVYVDNLVLALLLASMGLLDDIPGREGHPIAAGQPYFISDGSPINSFEFLRPLLKSLDYDLPKTSLAVSHALLLGRIFWAFYSFLYPWLNSRWLPQPLILPAEVYKVGVTHYFSFLKAKEELGYVPMVSSKEGMAATIAYWQERKRRSLDGPTIWAWLFCVIGMLGLFAAAYLPDYGPIPLIRAVHLFFFRSILALKVIFVLAAAAHVGEAIYAWNVAKTIDPANARGWFWQTFALGIFSLRLLLKRAKK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 36 chains have been computed
$ 
$ memory statistics:
$ 57784 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 1992 bytes was the average size of a spliced alignment
$ 35920 bytes predicted gene locations in total
$ 25 predicted gene locations have been stored
$ 1436 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 39 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 02:36:18
-->
