<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:46:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284693" ref_strand="+" ref_description="SGN-E284693 [cLES-3-F5]">
      <seq>cgagatgttgtaagagttagtacactttcaaaggactggcaatataatttctagagaattccacatgtgaaattttatcaaacagtgtggaaaacacccgaggacttgacatcccctgccattggatttattccgattcttgatagtttgctcaggtttcatagaggaataatattgaaggtcaccctcaatattattagtctaataatgtgtcctaatgttgatcgtctaattttttccctcgacattgatcacattcaacattttgtccttgaaattccatttacttatcctccatttaggttgcccaacttcttttttattgttcagcattgaggcatttctatctcatgggatgtgaaatacaactttcatgtttctttaagggatttaataagttgattaggctaatattgaaatctgtatcgttatcttctgatccgtttgaaaatttgatctctaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="23626" stop="22559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23326" g_stop="22859" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="467" r_length="467" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E284693" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23326" e_stop="22859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGATAATATATTTGCTGGAGAATTCCACATGTGAAGTTTGATCAAACAGTATGGAAAACACCCGAGGACTTGACGTCCCCTACCATTGGATTTATTTCAATTCTTGATAGTTTCCTCAGGTTACATAGAGGAATAATATTGAAGGTCACCTTCAATATTATTAGTCTAATAGTGTGTCCTGATGTTGATCGTTTGAATTTTTCCCTCGACACTGATCATCTTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCTATACAGGTTGCCTAACTTCTTTTTTAATTGTTCAGCATTGAGGCATTTGTATCTCAAGGAATGTGAAATACAACTTCCGTGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATATGTCACGTTATCTTTTGATACGTTTGAAAGTTTGATCTCTAATTGC</genome_strand>
        <mrna_strand>CGAGATGTTGTAAGAGTTAGTACACTTTCAAAGGACTGGCAATATAATTTCTAGAGAATTCCACATGTGAAATTTTATCAAACAGTGTGGAAAACACCCGAGGACTTGACATCCCCTGCCATTGGATTTATTCCGATTCTTGATAGTTTGCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAGTCTAATAATGTGTCCTAATGTTGATCGTCTAATTTTTTCCCTCGACATTGATCACATTCAACATTTTGTCCTTGAAATTCCATTTACTTATCCTCCATTTAGGTTGCCCAACTTCTTTTTT-ATTGTTCAGCATTGAGGCATTTCTATCTCATGGGATGTGAAATACAACTTTCATGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATCTGTATCGTTATCTTCTGATCCGTTTGAAAATTTGATCTCTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="43628" stop="42551"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43328" g_stop="42851" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43328" e_stop="42851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAATCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTAAATGATATAGTGTTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGTTTTCTATTTGGAGTTGTCCGATGATATCTACTCAGTACCCGTGTTTCTTATTGACCTCTACTTTTATGTTTTCTTCTTG-ATATTTGTCGAGTGCAGCAAACGTGCCTTCGTCTTCAACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCCAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTTACT-ACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357033" ref_strand="+" ref_description="SGN-E357033 [cTOS-22-C24]">
      <seq>actgaatagatatcatcgcccaactcaaaatagaaatcaatatatatcaagnattatcataaaatcaactatgatactcaacatgtagcaacaacaagcactatatcattaacaattaccgtcacgttcacacatgaggactcaagcctcaataccatactcatttgggaatcatgttcattagatttagtatattaacatctttcaagattcattatctttatttctcttgtgacggaacatgacattccgctccctcatattcattaatcctcttgtgtgaacacatgacactccgatcccctaaatctacatgacagtttcatgaacgctatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="42703" stop="43709"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43003" g_stop="43339" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E357033" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>337</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43003" e_stop="43339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTGAGTAGATATCATCGGACAACTCCAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAACACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTC-GATTCGTGACACCCGATCC</genome_strand>
        <mrna_strand>ACTGAATAGATATCATCGCCCAACTCAAAATAGAAATCAATATATATCAAGNATTATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAGCACTATATCATTAACAATTACCGTCACGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATCATGTTCATTAGATTTAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGACGGAACATGACATTCCGCTCCCTCATATTCATTAATCCTCTTGTGTGAACACATGACACTCCGATCCCCTAAATCTACATGACAGTTTCATGA-ACGCTATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="43629" stop="42794"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43329" g_stop="43092" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43329" e_stop="43092"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAATCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTAAATGATATAGTGTTTGTTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E349726" ref_strand="+" ref_description="SGN-E349726 [cTOS-3-C5]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacacatagattaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcgggtgtcacgaaccgacacgtagatttaggggatcaggtgtcacgaaccgacacgtagatttaggggatcggagtgtcacgttccgacacgtagatttaggggatcagagtatcacgtaccgacacaagaagattaatgaatatganggagcggaatgtcacgtaccgacacaagagaaataaagacaatgaatcttgaaagatgttatatactcaatctaatgaacataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="44190" stop="42874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43890" g_stop="43174" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="717" r_length="717" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E349726" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43890" e_stop="43174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCGTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATCGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTAGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAGTTAGGGGATCGGGTATCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCCGGTGTCACCAACCGACACGTAGATTTAGGGGATCGGGTGTCATGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGG-GTGTCACGAATCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACATAG-ATTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCAGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGAGTGTCACGTTCCGACACGTAGATTTAGGGGATCAGAGTATCACGTACCGACACAAGAAGATTAATGAATATGANGGAGCGGAATGTCACGTACCGACACAAGAGAAATAAAGACAATGAATCTTGAAAGATGTT-ATATACTCAATCTAATGAACATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E347579" ref_strand="+" ref_description="SGN-E347579 [cTOF-26-K4]">
      <seq>aataaagaaaatagaaagaacaagagagagaggaagaatcgaacgagaagggagaaacaaagcttggagaaaaatttgcttgcttgatcactaatcttcggtggaggtaggttatggttttcatgctttcatagtaaactcttaatagagaatgatatgtattggtagtattgtaaaccctgctatatgcttaattgtatgcatgcatgaacgtgattatataattgtgattatattaagcatgatgaagttattgaatcccaaatcttgataaaaatctaatctcttattaatgatgatgccttggtatagaagaaggcttgatgaataaaagtaatgggattgatgatgccttggtatagagaaggcctgatgatttacagaatgatattagtggatcggagtgtcacgtaccgacacatgcaggggatcgggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaactggcacgtagaattaggggatcgggtgtcacgaaccggcacgtagattaggggatcaggtgtcacgaaccgacacgtagaattaggggatcgggtgtcacgaaccgacacgtagaattaggggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="51461" stop="43001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43981" g_stop="43371" g_length="611"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E347579" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43981" e_stop="43371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAATCGAACGAGGAAGAAAGAAGAACAAAGCTTTG-G--GAATTTGCTTGCTTGATCACTAGTCGTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATCGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTAGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGG-GTGTCACGAACCGACACGTAGAGTTAGGGGATCGGGTATCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCCGGTGTCACCAACCGACACGTAGATTTAGGGGATCGGGTGTCATGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGAT</genome_strand>
        <mrna_strand>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGAAGAATCGAACGA-GAAGGGAG-A-AACAAAGCTTGGAGAAAAATTTGCTTGCTTGATCACTAATCTTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGGTAGTATTGTAAACCCTGCTATATGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAATCTAATCTCTTATTAATGATGATGCCTTGGTATAGAAGAAGGCTTGATGAATAAAAGTAATGGGATTGATGATGCCTTGGT-ATAGAGAAGGCCTGATGA-TTTACAGAATGATATTAGTGGATCGGAGTGTCACGTACCGACAC--A-TG-CAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACTGGCACGTAGAATTAGGGGATCGGGTGTCACGAACCGGCACGTAGA-TTAGGGGATCAGGTGTCACGAACCGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="44190" stop="43191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43890" g_stop="43490" g_length="401"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="402" r_length="402" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>401</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43890" e_stop="43490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTCGTCGGTGGAGGTAGGTTATGGTTT-TC--ATGCT-TTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATCGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTAGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAGTTAGGGGATCGGGTATCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACG</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATA-TAAGCATGATGAAGTTATTGAATCCCAAATCTTG-TAAAAACCTAATCTCTTTTTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAGA-TTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="44942" stop="45719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45242" g_stop="45418" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45242" e_stop="45418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTCTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCAAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTAACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="46423" stop="47735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46723" g_stop="47435" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46723" e_stop="47435"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTGGAAACCGCGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGATTTTTCTCCCTCAACATCTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTGATGAACGTAGCAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGTCTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="46423" stop="47618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46723" g_stop="47318" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46723" e_stop="47318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTGGAAACCGCGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGATTTTTCTCCCTCAACATCTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTGATGAACGTAGCAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="46423" stop="47548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46723" g_stop="47248" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46723" e_stop="47248"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTGGAAACCGCGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGATTTTTCTCCCTCAACATCTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTGATGAACGTAGCAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="46494" stop="47772"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46794" g_stop="47473" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46794" e_stop="47473"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTGGAAACCGCGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGATTTTTCTCCCTCAACATCTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTGATGAACGTAGCAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="46494" stop="47452"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46794" g_stop="47152" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46794" e_stop="47152"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTGGAAACCGCGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGATTTTTCTCCCTCAACATCTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTGATGAACGTAGCAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355232" ref_strand="+" ref_description="SGN-E355232 [cTOS-18-A6]">
      <seq>tcaatgcgaggaagaggatacttgttcttaatagttaccttgttcagttgtctgtagtctatgcacattctaaaacttccatccttcttcttcacaaataaaactggagcaccccaaggagatgcacttggtctaatgaagaccttgctcaacaactcttgaagttgagcctttaactctcttaattcggcgggagccattctataagggggtatagaaatggggcgtgtgcctggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcaggaaacacgtccaaaaactcgcggactaccgaaaccgactcaattgagggtacttgagtagtgtcatccttgagatgtgccaagaaagctgaacaccctttactaaccattttcttagcacgaagaaaggatatgatacgcaccagattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaacgtcaccgttttagcattacaatccaagatcgcaaaatttggagaaagccaagtcatacccagaattacatcaatgtcacccatttctaaaaaaccaaatctacataagtgttgctccccacgaaattcnacaaaacagaactatgtaccttttcaactaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="46943" stop="48201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47243" g_stop="47901" g_length="659"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="658" r_length="658" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E355232" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47243" e_stop="47901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACTCGGTTCAAGATCAATACAGAAGTCGATATCCCTATCTAGGGGCATACCAGGAAGATTTGCAGGAAACACATCCAGAATCTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTTTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAACCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCACATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCAC</genome_strand>
        <mrna_strand>TCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAGTTGTCTGTAGTCTATGCACATTCTAAAACTTCCATCCTTCTTCTTCACAAATAAAACTGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACCTTGCTCAACAACTCTTGAAGTTGAGCCTTTAACTCTCTTAATTCGGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCTGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGAAACACGTCCAAAAACTCGCGGACTACCGAAACCGACTCAATTGAGGGTACTTGAGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTGAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGATATGATACGCACCAGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAATGTCACCCATTTCTAA-AAAACCAAATCTACATAAGTGTTGCTCCCCACGAAATTCNACAAAACAGAACTATGTACCTTTTCAACTACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="49039" stop="47031"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48739" g_stop="48567" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.936"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48566" i_stop="47823" i_length="744">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47822" g_stop="47295" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="48739" e_stop="48567"/>
          <exon e_start="47822" e_stop="47295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTTGTGCCTTATCCAGATATGCCACCCAACTTTGTTTCTGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAGAAGTGGTAGATATCGTGGTAGAGGTGGAAGGAGTGAAGCCAGATGAATTCACCATGGCATCGACATCAAAGAGATTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACTCTAGAGGACAGGGTTCCGGAGGTTACTCAGTTCGACCCATTCAGTCTTCACTACAGACTACAGTTGGGGGTCTACCTCAGACCAGTCAACACTTCTCTGAGAGACCCATGCTTGACTCTAGAGAGTGTTATGGATGTGGGGAGACTGGACATATTAGGAGGAATTGTCCCAAACAGAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGGACGTGGTGGTCGAGGTAATGGTGGTCACCAAAGCGGCCGGGGTGATAGGAAAATTGGAGCCACTACATCACAACATGGTAGGGGCAACGGATAAACAAACGAAAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACATTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATACCTATTCGTGTTTCTACTCTGGTGGGTAAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTGAACTTTGTGGGGAGCAACACTTATGTAGATGTGGTTATCTTAGAAATGGATGATTTTGATGTAATTCTAGGTATGACTTGGTTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCAGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGAAACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGATTCTGGATGTGTTTCCTGCAAATCTTCCTGGTATGCCCCTAGATAGGGATATCGACTTCTGTATTGATCTTGAACCGAGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="47012" stop="48373"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47312" g_stop="48073" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47312" e_stop="48073"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACTCGGTTCAAGATCAATACAGAAGTCGATATCCCTATCTAGGGGCATACCAGGAAGATTTGCAGGAAACACATCCAGAATCTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTTTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAACCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCACATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCAGAGTAGAAACACGAATAGGTATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="47012" stop="48272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47312" g_stop="47972" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47312" e_stop="47972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACTCGGTTCAAGATCAATACAGAAGTCGATATCCCTATCTAGGGGCATACCAGGAAGATTTGCAGGAAACACATCCAGAATCTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTTTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAACCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCACATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCAGAGTAGAAACACGAATAGGTATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="47622" stop="48780"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47922" g_stop="48480" g_length="559"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="47922" e_stop="48480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACACGAATAGGTATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTATCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCTATCACCCCGGCCGCTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACTGGTCTGAGGTAGACCCCCAACTGTAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="47706" stop="49095"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48006" g_stop="48795" g_length="790"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48006" e_stop="48795"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTATCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCTATCACCCCGGCCGCTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACTGGTCTGAGGTAGACCCCCAACTGTAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAATCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGATATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACAGAAACAAAGTTGGGTGGCATATCTGGATAAGGCACAAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTGAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATATTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="47708" stop="48841"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48008" g_stop="48541" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48008" e_stop="48541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTATCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCTATCACCCCGGCCGCTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACTGGTCTGAGGTAGACCCCCAACTGTAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAATCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="47782" stop="76473"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48082" g_stop="48779" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48082" e_stop="48779"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTATCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCTATCACCCCGGCCGCTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACTGGTCTGAGGTAGACCCCCAACTGTAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAATCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGATATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACAGAAACAAAGTTGGGTGGCATATCTGGATAAGGCACAAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTGAAGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236652" ref_strand="+" ref_description="SGN-E236652 [cLED-13-L8]">
      <seq>tcgattctccttctctctctttctgttcttttctttttcttattcaaaccctccttcttttaccctaattagcatataattaagaataaaagatggaataataacccactaatttactcaaggttacctcttttaacccccaggtaattagacttattaacataaacccactaactttataattaaagtaggaatagtccaaaacgtcccttaaaacgtgtaaagaaatccgacccagactgggattacgcaacctgtgatggcccgtcgtgcctgcgacggtccgtcctgcaggtcgtcgcaaggttcagagactcaatttccaccaaagagtctgtgacggtccgtcacgcccgtgacggtccgtcgtgccattccgttacgaagttcagagagtcgatttttagtacccaatttcagaatttctaagtgttttgaaacgagactcctcgacggtccatcgtgctcatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="50824" stop="51890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51120" g_stop="51590" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E236652" ref_strand="+">
        <total_alignment_score>0.900</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51120" e_stop="51590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCCCTCTCTCTCT-TGT-TCTTTCTATTTTCTTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAAATGACAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTTGTGCCTGCGACGGTCCGTCCTGCAGGTCGTTACAAGGTTCAGAGAATGGATTTTCATTGAAGGCTCTGTTATGGTCCGTCACGCTTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAATGAGACCCCTCGACGGTCCGTCGTGCCCATGA</genome_strand>
        <mrna_strand>TCGATTCTCCTTCTCTCTCTTTCTGTTCTTTTCTTTTTCTTATTCAAACCCTCCTTCTTTTACCCTAATTAGCATATAATTAAGAATAAAAGATG-GAATAATAACCCACTAATTTACTCAAGGTTACCTCTTTTAACCCCCAGGTAATTAGACTTATTAACATAAACCCACTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGATGGCCCGTCGTGCCTGCGACGGTCCGTCCTGCAGGTCGTCGCAAGGTTCAGAGACTCAATTTCCACCAAAGAGTCTGTGACGGTCCGTCACGCCCGTGACGGTCCGTCGTGCCATTCCGTTACGAAGTTCAGAGAGTCGATTTTTAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAACGAGACTCCTCGACGGTCCATCGTGCTCATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E548274" ref_strand="+" ref_description="SGN-E548274 [TUS-59-L2]">
      <seq>tcgagatgttgtaagagttagtacactttcaaaggactggcaatataatttctagagaattccacatgtgaaattttatcaaacagtgtggaaaacacccgaggacttgacatcccctgccattggatttattccgattcttgatagtttgctcaggtttcatagaggaataatattgaaggtcaccctcaatattattagtctaataatgtgtcctaatgttgatcgtctaattttttccctcgacattgatcacattcaacattttgtccttgaaattccatttacttatcctccatttaggttgcccaacttcttttttattgttcagcattgaggcatttctatctcatgggatgtgaaatacaactttcatgtttctttaagggatttaataagttgattaggctaatattgaaatctgtatcgttatcttctgatacgtttgaaaatttgatctctaattgcccgttgcttgaggatttggtgctaaaagacacagacaattcgtacctcattattagtaattctcttaagctaaggtcatttgtctttcgtggcgatatacaattgatacatcttgaaaatgtccctgttctttccaatgttctgtatgcgcctagagaattagttctagaggacgaagatgattttgtcaatattttttcgtctattgttgctctccagtgtttcagcatggatctttttgagttcgataatggaacaactaaagttataccaacaaggcttccatcagttcttaactgtctgaaatgcctattcatgtcttggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="63707" stop="37043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="63407" g_stop="62696" g_length="712"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.906"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="62695" i_stop="62601" i_length="95">
            <donor d_prob="0.966" d_score="0.84"/>
            <acceptor a_prob="0.995" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="62600" g_stop="62516" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="712" r_stop="796" r_length="85" r_score="0.871"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E548274" ref_strand="+">
        <total_alignment_score>0.902</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="63407" e_stop="62696"/>
          <exon e_start="62600" e_stop="62516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAGATGTTGTAAGAGTTAGTACACTTTCGAAGGACTGACAATATATTTGCTGCAAAATTCCACATGTGAAGTTTGATCAAACAGTGTGGAAAACACCTGAGTACTTGACATCCCCTACCATTGGATCTATTCCAATTCTTGATAGTTTCCTCAAGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAATCTAATAGTGTTTCCTAATGTTGATCGTTTGATTTTTTCCCTCGATACTGATCACATTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCCATATAGTTTGCCTAACTTCATTTTTAATTGTTCTACATTGAGGCATTTGTATTTCAAGGAATGTGAAATACAACTTCCATGTTTGTTTCAGGGATTTAATAAGTTGATTAGCCTAATATTTAAATCTGTCATTTTATCTTCTGATGTGTTTGAAAGTTTGACCTCTAATTGCCCATTACTTGAGGATTTGGTGCTAAAAGACATAGACAATTCGTACCTCATGAGTATTAATGCTCCTAAGCTAAGGTCATTTGTCTTTCGTGGCGATATACAATTGATACATCTTGAAAATGTCTCTGTTCTTTCCAATGTTCTGTATGCGCCTAGAGAATTAGTTCTAGAGGACAAAGATGATTTTGTCAATATTTTTTCGTCTATTCCTGCTCTACAGTGTTTCAAATAGGATTTTTTTGAGGTAATGTTTCTTCATTTTACTTAATGTTAATGCATTTTCATATGTATTTTTTTTAGAAATTTCAGTCATCCTGATTTTTGTCATTTTATTCGTAGGTCGATAATGGATAACCTAAAGTTATACCAACCAGGCTTCCTTTAGTTCTTAACTGTCTGAAACGCCTATTAATGCCTTGGACTA</genome_strand>
        <mrna_strand>TCGAGATGTTGTAAGAGTTAGTACACTTTCAAAGGACTGGCAATATAATTTCTAGAGAATTCCACATGTGAAATTTTATCAAACAGTGTGGAAAACACCCGAGGACTTGACATCCCCTGCCATTGGATTTATTCCGATTCTTGATAGTTTGCTCAGGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAGTCTAATAATGTGTCCTAATGTTGATCGTCTAATTTTTTCCCTCGACATTGATCACATTCAACATTTTGTCCTTGAAATTCCATTTACTTATCCTCCATTTAGGTTGCCCAACTTC-TTTTTTATTGTTCAGCATTGAGGCATTTCTATCTCATGGGATGTGAAATACAACTTTCATGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATCTGTATCGTTATCTTCTGATACGTTTGAAAATTTGATCTCTAATTGCCCGTTGCTTGAGGATTTGGTGCTAAAAGACACAGACAATTCGTACCTCATTATTAGTAATTCTCTTAAGCTAAGGTCATTTGTCTTTCGTGGCGATATACAATTGATACATCTTGAAAATGTCCCTGTTCTTTCCAATGTTCTGTATGCGCCTAGAGAATTAGTTCTAGAGGACGAAGATGATTTTGTCAATATTTTTTCGTCTATTGTTGCTCTCCAGTGTTTCAGCATGGATCTTTTTGAG...............................................................................................TTCGATAATGGAACAACTAAAGTTATACCAACAAGGCTTCCATCAGTTCTTAACTGTCTGAAATGCCTATTCATGTCTTGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="73003" stop="74189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73303" g_stop="73889" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73303" e_stop="73889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAGAATGGTGTGGATCAAATCATCAACACGGGGCACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCCATTATTTCTTCTTTAGCCTCTCCTCGCAACACTTTATCTTGGATCCGGATCAATTTCTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGAAAAGAAGATCTTTCCTCCACACAAGCCAACAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCGTTAGCCAGAGTCTGAACCTCTCTAGCCAATGGACGTCTAGAAACTTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCGTCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCTTCTGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAGGCTACGATGATCCGTGTATACTTCACACTTAACCCCATATAGATAGTGTCTCCATTGCTTTAAGGCAAACACTACCGCAGCCAATTCCAAATCATGGGTCGGATAATTACATTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="73003" stop="74189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73303" g_stop="73889" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73303" e_stop="73889"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTATAAGAATGGTGTGGATCAAATCATCAACACGGGGCACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCCATTATTTCTTCTTTAGCCTCTCCTCGCAACACTTTATCTTGGATCCGGATCAATTTCTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGAAAAGAAGATCTTTCCTCCACACAAGCCAACAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCGTTAGCCAGAGTCTGAACCTCTCTAGCCAATGGACGTCTAGAAACTTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCGTCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCTTCTGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAGGCTACGATGATCCGTGTATACTTCACACTTAACCCCATATAGATAGTGTCTCCATTGCTTTAAGGCAAACACTACCGCAGCCAATTCCAAATCATGGGTCGGATAATTACATTCGTGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="74809" stop="75739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75109" g_stop="75439" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75109" e_stop="75439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATGACAATCCAAGATCGCAAAATTCGCAAAAATCCAAGTCATACCCAGAATTACTTCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAAAAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCTTTAGCAAATGCGGAAGATACATATGAAAATGTAGAGTCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="75737" stop="77055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76037" g_stop="76755" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76037" e_stop="76755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCATGCTCTAGGCTCAAAAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTAT-CCTATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGCTTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAATCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACTTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGTACTTGTTCATTTTCCCCAT-CCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGATTCACCGCCCTAGTATCAGATGATCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="75740" stop="77002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76040" g_stop="76702" g_length="663"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.916"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.916</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76040" e_stop="76702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCATGCTCTAGGCTCAAAAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTAT-CCTATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGCTTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAATCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACTTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATT-CCTCATTCTGTACTTGTTCATTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATT-TGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329287" ref_strand="+" ref_description="SGN-E329287 [cTOD-2-K13]">
      <seq>acctagcccatctggtactaaggcggtgacacctccaccaactgaggaagtggtaagagagggtgaggatggggagaatgaacaagtgcagaatgaggaattgccaccccaacctacccaagagatgatcaatcaggttcttgcttaccttagcgggttatctgatcaaggccaagcacctccagtgttttctgcactagcacctcaggctccggaggtacaacatgcgcctactgtgactccccgcatcgatacctcattggaaataggaacgtttccccgtctgactacagggcctataatgacaaatgatcagcatgaactttttagtaagttcttgaaattgaaacctcaagtctacaagggtgttgaatctgaggatgcctacgattttctggttgactgtcatgagctactacacaagatgggtatagtagaacggtttggtgttgagtttgtgacttatcagtttcaagggaacgccaaaatgtggtggcggtcacatgttgagtgtcaaccaacagaggcaccacgtatgacttgggcatcattct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="77059" stop="75907"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76759" g_stop="76207" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E329287" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76759" e_stop="76207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAGATCATCTGATACTAGGGCGGTGAATCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAAGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGATTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAAGCAGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATAGG-ATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</genome_strand>
        <mrna_strand>ACCTAGCCCATCTGGTACTAAGGCGGTGACACCTCCACCAACTGAGGAAGTGGTAAGAGAGGGTGAGGATGGGGAGAATGAACAAGTGCAGAATGAGGAATTGCCACCCCAACCTACCCAAGAGATGATCAATCAGGTTCTTGCTTACCTTAGCGGGTTATCTGATCAAGGCCAAGCACCTCCAGTGTTTTCTGCACTAGCACCTCAGGCTCCGGAGGTACAACATGCGCCTACTGTGACTCCCCGCATCGATACCTCATTGGAAATAGGAACGTTTCCCCGTCTGACTACAGGGCCTATAATGACAAATGATCAGCATGAACTTTTTAGTAAGTTCTTGAAATTGAAACCTCAAGTCTACAAGGGTGTTGAATCTGAGGATGCCTACGATTTTCTGGTTGACTGTCATGAGCTACTACACAAGATGGGTATAGTAGAACGGTTTGGTGTTGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACGTATGACTTGGGCATCATTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="+" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="76094" stop="77127"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76394" g_stop="76826" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="+" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76394" e_stop="76826"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAATCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACTTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGTACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGATTCACCGCCCTAGTATCAGATGATCTAGGTGCTCGTCCTCTTGCTCTAGAGGACATCCTCCCACGACCTCTACCACGGCTTCTTGCCGCTACTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="77417" stop="76533"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77117" g_stop="76833" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77117" e_stop="76833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTAAGCCAGCCACT-GGGCTGTAG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E298638" ref_strand="+" ref_description="SGN-E298638 [cLET-44-A20]">
      <seq>tcattacatcggatttcagggtgagctaacgcttctagcttggactggatcttcttcttcatgtcttgatgccttgaagttccggcatggactagctgtttatgtattttagcttcttagatactcttagatttagtaatttgaagtacatgttcttgtgatgatgactgccagattttggggataataatagttgttgagtttttagaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="77794" stop="69901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77494" g_stop="77276" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E298638" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77494" e_stop="77276"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTACATCGGATTTCAGGGTAAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCT-TTTACTTATTTTAGCTTCTTAGAATACTCTTAG-TTTAGTAATTTAATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</genome_strand>
        <mrna_strand>TCATTACATCGGATTTCAGGGTGAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAAGTTCCGGCATGGACTAGCTGTTTATGTATTTTAGCTTCTTAG-ATACTCTTAGATTTAGTAATTTGA-AGTACATGTTCTTGTGATGATGACTGCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549437" ref_strand="+" ref_description="SGN-E549437 [TUS-70-G14]">
      <seq>tgatcatgaaatagggagacaacttggtgctcctgacatttcttcatttcaagctgcgccaaatttcactcctgaacaatataatcatatactgaaaatgattgataaagactcgtcttctcagaatgttgttgccaacatggcaggacctttgcaatggcaaggtgagggggattggtaaggaagaaggaggtctctacatacttccgtctaccaaaaggccatcacttgccactgctgatccttcaccacctgttgctactgtttttcagtcaactgcttcatctacatctaatccatctacgtccaatccatctgatatatctctttggcatctcagacttggacatgctcctgccactgtactcaagagaattgattttttgaagcctcaccttcaaagtagtatttttcattcttgttccatatgtcctcttgcaaggcaaactagatttccttttcctcgtagtgttacaaaaactgtatctccttttgaacttcttcacatggatgtttggggaccttataaacaatgtacttataatggtcatagattttttcttacgattgttgatgactattcaagaatgacttggattttcttgttgagatttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="115007" stop="113440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114707" g_stop="114562" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114561" i_stop="114212" i_length="350">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114211" g_stop="113733" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="625" r_length="479" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E549437" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549437" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114707" e_stop="114562"/>
          <exon e_start="114211" e_stop="113733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATGAAATAGGGGGACAACTTGGTGCTCCTGACATTTCTTCATTTCAAGCAGCACCAAATTTCACTCCTGAACAATATAATCATATACTGAAAATGATTGATAAAGACTCGTCTTCTCAGAATGTTGTTGCCAACATGGCAGGTATAGCTCATGAAGCCTCCTCTACATTTAGTACATTCAATGCTTGTTTTCCTACAGGTCATGATACAGTTCCTTGGGTTGTGGATACTGGAGCAACTCATCACATGGTTTCTAGCTTGGATGTTCTTTTTAGTCCAAATATGGTTTCATCTGAGTCCAGCAATGTCCATTTACCAAATGGTCAAACCACTATTGTTACTCACAGAGGTTCTGCCACACTATTTGACACCAATGACCTGCATGATGTCTTATATCTCCCTCACTTTTCTTATAATCTCTTGTCAATCTCTAAACTCACTAAAGAACTAAATTGTTGTGTTTGTTTCTATCCCAATTTTTGTCTTTTCCAGGACCTTTGCAATGGCAAGGTGAGGGGGATTGGTAAGGAAGAAGGAGGTATCTACATACTTCCATCTACCAAAAGGCCATCACTTGCCACTGTTGATCCTTCACCACCGGTTGCTACTGTTTTTCAGTCAACTGCTTCATCTACATCTAATCCATCTATGTCCAATCCATCTGATATATCTCTTTGGCATCTCAGACTTGGGCATGCTCCTGCCACTGTACTCAACAAAATTGATTTTTTGAAGCCTCACCTTCAAAATAGTATTTTTCATTCTTGTTCCATATGTCCTCTTGCAAGGCAAACTAGATTTCCTTTTCCTCATAGTGTTACAAAAACTGTATCTCCTTTTGAACTTCTTCACATGGATGTTTGGGGACCTTATAAACAATGTACTTATAATGGTCATAGATTTTTTCTTACCATTGTTGATGACTATTCAAGAATGACTTGGATTTTCTTGTTGAGATTTAAAACTCAATT</genome_strand>
        <mrna_strand>TGATCATGAAATAGGGAGACAACTTGGTGCTCCTGACATTTCTTCATTTCAAGCTGCGCCAAATTTCACTCCTGAACAATATAATCATATACTGAAAATGATTGATAAAGACTCGTCTTCTCAGAATGTTGTTGCCAACATGGCAG..............................................................................................................................................................................................................................................................................................................................................................GACCTTTGCAATGGCAAGGTGAGGGGGATTGGTAAGGAAGAAGGAGGTCTCTACATACTTCCGTCTACCAAAAGGCCATCACTTGCCACTGCTGATCCTTCACCACCTGTTGCTACTGTTTTTCAGTCAACTGCTTCATCTACATCTAATCCATCTACGTCCAATCCATCTGATATATCTCTTTGGCATCTCAGACTTGGACATGCTCCTGCCACTGTACTCAAGAGAATTGATTTTTTGAAGCCTCACCTTCAAAGTAGTATTTTTCATTCTTGTTCCATATGTCCTCTTGCAAGGCAAACTAGATTTCCTTTTCCTCGTAGTGTTACAAAAACTGTATCTCCTTTTGAACTTCTTCACATGGATGTTTGGGGACCTTATAAACAATGTACTTATAATGGTCATAGATTTTTTCTTACGATTGTTGATGACTATTCAAGAATGACTTGGATTTTCTTGTTGAGATTTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E546838" ref_strand="+" ref_description="SGN-E546838 [TUS-70-G14](-)">
      <seq>tgatcatgaaatagggagacaacttggtgctcctgacatttcttcatttcaagctgcgccaaatttcactcctgaacaatataatcatatactgaaaatgattgataaagactcgtcttctcagaatgttgttgccaacatggcaggacctttgcaatggcaaggtgagggggattggtaaggaagaaggaggtctctacatacttccgtctaccaaaaggccatcacttgccactgctgatccttcaccacctgttgctactgtttttcagtcaactgcttcatctacatctaatccatctacgtccaatccatctgatatatctctttggcatctcagacttggacatgctcctgccactgtactcaagagaattgattttttgaagcctcaccttcaaagtagtatttttcattcttgttccatatgtcctcttgcaaggcaaactagatttccttttcctcgtagtgttacaaaaactgtatctccttttgaacttcttcacatggatgtttggggaccttataaacaatgtacttataatggtcatagattttttcttacgattgttgatgactattcaagaatgacttggattttcttgttgagatttaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="115007" stop="113440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114707" g_stop="114562" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114561" i_stop="114212" i_length="350">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114211" g_stop="113740" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="618" r_length="472" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="619" polyA_stop="634"/>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E546838" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>618</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E546838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114707" e_stop="114562"/>
          <exon e_start="114211" e_stop="113740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCATGAAATAGGGGGACAACTTGGTGCTCCTGACATTTCTTCATTTCAAGCAGCACCAAATTTCACTCCTGAACAATATAATCATATACTGAAAATGATTGATAAAGACTCGTCTTCTCAGAATGTTGTTGCCAACATGGCAGGTATAGCTCATGAAGCCTCCTCTACATTTAGTACATTCAATGCTTGTTTTCCTACAGGTCATGATACAGTTCCTTGGGTTGTGGATACTGGAGCAACTCATCACATGGTTTCTAGCTTGGATGTTCTTTTTAGTCCAAATATGGTTTCATCTGAGTCCAGCAATGTCCATTTACCAAATGGTCAAACCACTATTGTTACTCACAGAGGTTCTGCCACACTATTTGACACCAATGACCTGCATGATGTCTTATATCTCCCTCACTTTTCTTATAATCTCTTGTCAATCTCTAAACTCACTAAAGAACTAAATTGTTGTGTTTGTTTCTATCCCAATTTTTGTCTTTTCCAGGACCTTTGCAATGGCAAGGTGAGGGGGATTGGTAAGGAAGAAGGAGGTATCTACATACTTCCATCTACCAAAAGGCCATCACTTGCCACTGTTGATCCTTCACCACCGGTTGCTACTGTTTTTCAGTCAACTGCTTCATCTACATCTAATCCATCTATGTCCAATCCATCTGATATATCTCTTTGGCATCTCAGACTTGGGCATGCTCCTGCCACTGTACTCAACAAAATTGATTTTTTGAAGCCTCACCTTCAAAATAGTATTTTTCATTCTTGTTCCATATGTCCTCTTGCAAGGCAAACTAGATTTCCTTTTCCTCATAGTGTTACAAAAACTGTATCTCCTTTTGAACTTCTTCACATGGATGTTTGGGGACCTTATAAACAATGTACTTATAATGGTCATAGATTTTTTCTTACCATTGTTGATGACTATTCAAGAATGACTTGGATTTTCTTGTTGAGATTTAAAA</genome_strand>
        <mrna_strand>TGATCATGAAATAGGGAGACAACTTGGTGCTCCTGACATTTCTTCATTTCAAGCTGCGCCAAATTTCACTCCTGAACAATATAATCATATACTGAAAATGATTGATAAAGACTCGTCTTCTCAGAATGTTGTTGCCAACATGGCAG..............................................................................................................................................................................................................................................................................................................................................................GACCTTTGCAATGGCAAGGTGAGGGGGATTGGTAAGGAAGAAGGAGGTCTCTACATACTTCCGTCTACCAAAAGGCCATCACTTGCCACTGCTGATCCTTCACCACCTGTTGCTACTGTTTTTCAGTCAACTGCTTCATCTACATCTAATCCATCTACGTCCAATCCATCTGATATATCTCTTTGGCATCTCAGACTTGGACATGCTCCTGCCACTGTACTCAAGAGAATTGATTTTTTGAAGCCTCACCTTCAAAGTAGTATTTTTCATTCTTGTTCCATATGTCCTCTTGCAAGGCAAACTAGATTTCCTTTTCCTCGTAGTGTTACAAAAACTGTATCTCCTTTTGAACTTCTTCACATGGATGTTTGGGGACCTTATAAACAATGTACTTATAATGGTCATAGATTTTTTCTTACGATTGTTGATGACTATTCAAGAATGACTTGGATTTTCTTGTTGAGATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362905" ref_strand="+" ref_description="SGN-E362905 [cLPP-2-N24]">
      <seq>gatcatgaaatagggagacaacttggtgctcctgacatttcttcatttcaagctgcgccaaatttcactcctgaacaatataatcatatactgaaaatgattgataaagactcgtcttctcagaatgttgttgccaacatggcaggacctttgcaatggcaaggtgagggggattggtaaggaagaaggaggtctctacatacttccgtctaccaaaaggccatcacttgccactgctgatccttcaccacctgttgctactgtttttcagtcaactgcttcatctacatctaatccatctacgtccaatccatctgatatatctctttggcatctcagacttggacatgctcctgccactgtactcaagagaattgattttttgaagcctcaccttcaaagtagtatttttcattcttgttccatatgtcctcttgcaaggcaaactagatttccttttcctcgtagtgttacaaaaactgtatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="115006" stop="113571"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114706" g_stop="114562" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="114561" i_stop="114212" i_length="350">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="114211" g_stop="113871" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="486" r_length="341" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E362905" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362905" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114706" e_stop="114562"/>
          <exon e_start="114211" e_stop="113871"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCATGAAATAGGGGGACAACTTGGTGCTCCTGACATTTCTTCATTTCAAGCAGCACCAAATTTCACTCCTGAACAATATAATCATATACTGAAAATGATTGATAAAGACTCGTCTTCTCAGAATGTTGTTGCCAACATGGCAGGTATAGCTCATGAAGCCTCCTCTACATTTAGTACATTCAATGCTTGTTTTCCTACAGGTCATGATACAGTTCCTTGGGTTGTGGATACTGGAGCAACTCATCACATGGTTTCTAGCTTGGATGTTCTTTTTAGTCCAAATATGGTTTCATCTGAGTCCAGCAATGTCCATTTACCAAATGGTCAAACCACTATTGTTACTCACAGAGGTTCTGCCACACTATTTGACACCAATGACCTGCATGATGTCTTATATCTCCCTCACTTTTCTTATAATCTCTTGTCAATCTCTAAACTCACTAAAGAACTAAATTGTTGTGTTTGTTTCTATCCCAATTTTTGTCTTTTCCAGGACCTTTGCAATGGCAAGGTGAGGGGGATTGGTAAGGAAGAAGGAGGTATCTACATACTTCCATCTACCAAAAGGCCATCACTTGCCACTGTTGATCCTTCACCACCGGTTGCTACTGTTTTTCAGTCAACTGCTTCATCTACATCTAATCCATCTATGTCCAATCCATCTGATATATCTCTTTGGCATCTCAGACTTGGGCATGCTCCTGCCACTGTACTCAACAAAATTGATTTTTTGAAGCCTCACCTTCAAAATAGTATTTTTCATTCTTGTTCCATATGTCCTCTTGCAAGGCAAACTAGATTTCCTTTTCCTCATAGTGTTACAAAAACTGTATC</genome_strand>
        <mrna_strand>GATCATGAAATAGGGAGACAACTTGGTGCTCCTGACATTTCTTCATTTCAAGCTGCGCCAAATTTCACTCCTGAACAATATAATCATATACTGAAAATGATTGATAAAGACTCGTCTTCTCAGAATGTTGTTGCCAACATGGCAG..............................................................................................................................................................................................................................................................................................................................................................GACCTTTGCAATGGCAAGGTGAGGGGGATTGGTAAGGAAGAAGGAGGTCTCTACATACTTCCGTCTACCAAAAGGCCATCACTTGCCACTGCTGATCCTTCACCACCTGTTGCTACTGTTTTTCAGTCAACTGCTTCATCTACATCTAATCCATCTACGTCCAATCCATCTGATATATCTCTTTGGCATCTCAGACTTGGACATGCTCCTGCCACTGTACTCAAGAGAATTGATTTTTTGAAGCCTCACCTTCAAAGTAGTATTTTTCATTCTTGTTCCATATGTCCTCTTGCAAGGCAAACTAGATTTCCTTTTCCTCGTAGTGTTACAAAAACTGTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E549469" ref_strand="+" ref_description="SGN-E549469 [TUS-70-L7]">
      <seq>tcactgtttcttccattcttttcttcatctcacaattattctctcaactgccataacaatggcaaggtagctatcactcaacatggtatcagagccaccaatactctagctgctaagagagagttttttttcttttttgcatcattcaaattggacgaatagtggaataccgacgtcggagataatcggaaactatggtggatgcaattaggtcatcggaggtgcaagataactccaatcgagaacagatcgacaaattcactgatatccacccaaggaatcctttatatcttcatccatccgatactccaggtagcattttaatccctcaacaacttactggtatagaaaattatactgggtggagtaattctatgagagtagcattgttagctaagaataaaattggatttattgatggtacttgttgtaaacatcactacaaaggagatctgaatcatgaatgggagagatgtaatgcctttgtgctatcgtggattacaaactctgtttcgaaggaattagcaaatggcttaatgttttcatcaaatgcccataatgtttggaaggatctganagagaggtttgacaaacgtaatctcactagaatataccaggttcatcgcgaaatcagtacaatgagtcaaggaacttttacagtttctgagtattattccaaattgcgaaaactttgggatgagtatgtatcattggttcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="116235" stop="114917"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115935" g_stop="115217" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E549469" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E549469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115935" e_stop="115217"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTGTTTCTTCCATTCTTTTCTTCATCTCACAATTATTCTTTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCT-AGAGAGAGTTTTTTTTGTTGTTCTGCATCATTCAAATTGGACGAACAGTGGAATACCGACGTCGGAGATAATCGGAAACTATGGTGGATGCAATTAGGTCATCGGAGGTGCAAGACAACTCCAATCGAGAACAGATCGAAAAATTCACTGATATACATCCAAGGAATCCTTTATATCTTCATCCATCTGATACTCCAGGTAGCATTTTAATCCCTCAACAACTTACTGGTATAGAAAATTATACTGGGTGGAGTAATTCTATGAGAGTAGCATTGTTAGCTAAGAATAAAATTGGATTTATTGATGATACTTGTTGTAAACATCACTACAAAGGAGATCTGAATCATGAATGGGAGAGATGTAATGCTTTTGTGCTATCGTGGATCACAAACTCTGTTTCGAAGGAATTAGCAAATGGCTTAATGTTTTCATCAAATGCCCATAATGTTTGGAAGGATCTGAAAGAGAGGTTTGACAAACGTAATCTCACTAGAATATACCAGGTTCATCGCGAAATCAGTACAATGAGTCAAGGAACTTTTACAGTTTCTGAGTATTATTCCAAATTGAGAAATCTTTGGGATGAGTATGGATCATTGGTTCCT</genome_strand>
        <mrna_strand>TCACTGTTTCTTCCATTCTTTTCTTCATCTCACAATTATTCTCTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCTAAGAGAGAGTTTTTTTTCTT-TTTTGCATCATTCAAATTGGACGAATAGTGGAATACCGACGTCGGAGATAATCGGAAACTATGGTGGATGCAATTAGGTCATCGGAGGTGCAAGATAACTCCAATCGAGAACAGATCGACAAATTCACTGATATCCACCCAAGGAATCCTTTATATCTTCATCCATCCGATACTCCAGGTAGCATTTTAATCCCTCAACAACTTACTGGTATAGAAAATTATACTGGGTGGAGTAATTCTATGAGAGTAGCATTGTTAGCTAAGAATAAAATTGGATTTATTGATGGTACTTGTTGTAAACATCACTACAAAGGAGATCTGAATCATGAATGGGAGAGATGTAATGCCTTTGTGCTATCGTGGATTACAAACTCTGTTTCGAAGGAATTAGCAAATGGCTTAATGTTTTCATCAAATGCCCATAATGTTTGGAAGGATCTGANAGAGAGGTTTGACAAACGTAATCTCACTAGAATATACCAGGTTCATCGCGAAATCAGTACAATGAGTCAAGGAACTTTTACAGTTTCTGAGTATTATTCCAAATTGCGAAAACTTTGGGATGAGTATGTATCATTGGTTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E360288" ref_strand="+" ref_description="SGN-E360288 [cLPP-8-C9]">
      <seq>tttttttctcactgtttcttccattcttttcttcatctcacaattattctctcaactgccataacaatggcaaggtagctatcactcaacatggtatcagagccaccaatactctagctgctaagagagagttttttttcttttttgcatcattcaaattggacgaatagtggaataccgacgtcggagataatcggaaactatggtggatgcaattaggtcatcggaggtgcaagataactccaatcgagaacagatcgacaaattcactgatatccacccaaggaatcctttatatcttcatccatccgatactccaggtagcattttaatccctcaacaacttactggtatagaaaattatactgggtggagtaattctatgagagtagcattgttagctaagaataaaattggatttattgatggtacttgttgtaaacatcactacaaaggagatctgaatcatgaatgggagagatgtaatgcctttgtgctatcgtggattacaaactctgtttcgaaggaattagcaaatggcttaatgttttcatcaaatgcccataatgtttggaaggatctgaaagagaggtttgacaaacgtaatctcactagaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="116244" stop="115023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115943" g_stop="115323" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="621" r_length="621" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E360288" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E360288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115943" e_stop="115323"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTCCTCACTGTTTCTTCCATTCTTTTCTTCATCTCACAATTATTCTTTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCT-AGAGAGAGTTTTTTTTGTTGTTCTGCATCATTCAAATTGGACGAACAGTGGAATACCGACGTCGGAGATAATCGGAAACTATGGTGGATGCAATTAGGTCATCGGAGGTGCAAGACAACTCCAATCGAGAACAGATCGAAAAATTCACTGATATACATCCAAGGAATCCTTTATATCTTCATCCATCTGATACTCCAGGTAGCATTTTAATCCCTCAACAACTTACTGGTATAGAAAATTATACTGGGTGGAGTAATTCTATGAGAGTAGCATTGTTAGCTAAGAATAAAATTGGATTTATTGATGATACTTGTTGTAAACATCACTACAAAGGAGATCTGAATCATGAATGGGAGAGATGTAATGCTTTTGTGCTATCGTGGATCACAAACTCTGTTTCGAAGGAATTAGCAAATGGCTTAATGTTTTCATCAAATGCCCATAATGTTTGGAAGGATCTGAAAGAGAGGTTTGACAAACGTAATCTCACTAGAATATA</genome_strand>
        <mrna_strand>TTTTTTTCTCACTGTTTCTTCCATTCTTTTCTTCATCTCACAATTATTCTCTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCTAAGAGAGAGTTTTTTTTCTT-TTTTGCATCATTCAAATTGGACGAATAGTGGAATACCGACGTCGGAGATAATCGGAAACTATGGTGGATGCAATTAGGTCATCGGAGGTGCAAGATAACTCCAATCGAGAACAGATCGACAAATTCACTGATATCCACCCAAGGAATCCTTTATATCTTCATCCATCCGATACTCCAGGTAGCATTTTAATCCCTCAACAACTTACTGGTATAGAAAATTATACTGGGTGGAGTAATTCTATGAGAGTAGCATTGTTAGCTAAGAATAAAATTGGATTTATTGATGGTACTTGTTGTAAACATCACTACAAAGGAGATCTGAATCATGAATGGGAGAGATGTAATGCCTTTGTGCTATCGTGGATTACAAACTCTGTTTCGAAGGAATTAGCAAATGGCTTAATGTTTTCATCAAATGCCCATAATGTTTGGAAGGATCTGAAAGAGAGGTTTGACAAACGTAATCTCACTAGAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E362559" ref_strand="+" ref_description="SGN-E362559 [cLPP-1-G14]">
      <seq>ttttttctcactgtttcttccattcttttcttcatctcacaattattctctcaactgccataacaatggcaaggtagctatcactcaacatggtatcagagccaccaatactctagctgctagagagagtttttttttcttttttgcatcattcaaattggacgaacagtggaataccgacgtcggagataatcggaaactatggtggatgcaattaggtcatcggaggtgcaagataactccaatcgagaacagatctccaatcgagaacagatcgacaaattcactgatatccacccaaggaatcctttatatcttcatccatctgatactccaggtagcattttaatccctcaacaacttactggtatagaaaattatactgggtggagtaattctatgagagtagcattgttagctaagaataaaattggatttattgatggtacttgttgtaaacatcactacaaaggagatctgaatcatgaatgggagagatgtaatgcctttgtgctatcgtggattacaaactctgtttcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="116243" stop="115120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115942" g_stop="115420" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.908"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E362559" ref_strand="+">
        <total_alignment_score>0.908</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E362559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115942" e_stop="115420"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTCCTCACTGTTTCTTCCATTCTTTTCTTCATCTCACAATTATTCTTTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCTAGAGAGAGTTTTTTTTGTTGTTCTGCATCATTCAAATTGGACGAACAGTGGAATACCGACGTCGGAGATAATCGGAAACTATGGTGGATGCAATTAGGTCATCGGAGGT----G-------C-A---AG-ACA-A-CTCCAATCGAGAACAGATCGAAAAATTCACTGATATACATCCAAGGAATCCTTTATATCTTCATCCATCTGATACTCCAGGTAGCATTTTAATCCCTCAACAACTTACTGGTATAGAAAATTATACTGGGTGGAGTAATTCTATGAGAGTAGCATTGTTAGCTAAGAATAAAATTGGATTTATTGATGATACTTGTTGTAAACATCACTACAAAGGAGATCTGAATCATGAATGGGAGAGATGTAATGCTTTTGTGCTATCGTGGATCACAAACTCTGTTTCGA</genome_strand>
        <mrna_strand>TTTTTTCTCACTGTTTCTTCCATTCTTTTCTTCATCTCACAATTATTCTCTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCTAGAGAGAGTTTTTTTTTCTTTTTTGCATCATTCAAATTGGACGAACAGTGGAATACCGACGTCGGAGATAATCGGAAACTATGGTGGATGCAATTAGGTCATCGGAGGTGCAAGATAACTCCAATCGAGAACAGATCTCCAATCGAGAACAGATCGACAAATTCACTGATATCCACCCAAGGAATCCTTTATATCTTCATCCATCTGATACTCCAGGTAGCATTTTAATCCCTCAACAACTTACTGGTATAGAAAATTATACTGGGTGGAGTAATTCTATGAGAGTAGCATTGTTAGCTAAGAATAAAATTGGATTTATTGATGGTACTTGTTGTAAACATCACTACAAAGGAGATCTGAATCATGAATGGGAGAGATGTAATGCCTTTGTGCTATCGTGGATTACAAACTCTGTTTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E361593" ref_strand="+" ref_description="SGN-E361593 [cLPP-6-H12]">
      <seq>ttctctcaactgccatagcaatggcaaggtagctatcactcaacatggtatcagagccaccaatactctagctgctaagagagagttatttttcttttttgcatcattcaaattggacgaatagtggaataccgacgtcggagataatcggaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0304N09-Qc9by/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0304N09.1" temp_strand="-" temp_description="C04HBa0304N09.1  CU914529.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0304N09 sequenced_by:sanger upload_account_name:uk">
        <position start="116197" stop="115441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="115897" g_stop="115741" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0304N09.1" gen_strand="-" ref_id="SGN-E361593" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>157</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0304N09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E361593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="115897" e_stop="115741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCT-AGAGAGAGTTTTTTTTGTTGTTCTGCATCATTCAAATTGGACGAACAGTGGAATACCGACGTCGGAGATAATCGGAAACTA</genome_strand>
        <mrna_strand>TTCTCTCAACTGCCATAGCAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCTAAGAGAGAGTTATTTTTCTT-TTTTGCATCATTCAAATTGGACGAATAGTGGAATACCGACGTCGGAGATAATCGGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>39</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="23326" PGL_stop="22859"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23326" e_stop="22859"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="23326" e_stop="22859" e_length="468"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23326" stop="22859"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284693" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAGATGTTGTTAGAGTTAGTACACTTTCGAAGGACTGATAATATATTTGCTGGAGAATTCCACATGTGAAGTTTGATCAAACAGTATGGAAAACACCCGAGGACTTGACGTCCCCTACCATTGGATTTATTTCAATTCTTGATAGTTTCCTCAGGTTACATAGAGGAATAATATTGAAGGTCACCTTCAATATTATTAGTCTAATAGTGTGTCCTGATGTTGATCGTTTGAATTTTTCCCTCGACACTGATCATCTTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCTATACAGGTTGCCTAACTTCTTTTTTAATTGTTCAGCATTGAGGCATTTGTATCTCAAGGAATGTGAAATACAACTTCCGTGTTTCTTTAAGGGATTTAATAAGTTGATTAGGCTAATATTGAAATATGTCACGTTATCTTTTGATACGTTTGAAAGTTTGATCTCTAATTGC</gDNA_template>
            <first_frame> R  D  V  V  R  V  S  T  L  S  K  D  *  *  Y  I  C  W  R  I  P  H  V  K  F  D  Q  T  V  W  K  T  P  E  D  L  T  S  P  T  I  G  F  I  S  I  L  D  S  F  L  R  L  H  R  G  I  I  L  K  V  T  F  N  I  I  S  L  I  V  C  P  D  V  D  R  L  N  F  S  L  D  T  D  H  L  Q  H  F  V  L  K  L  P  F  T  Y  P  L  Y  R  L  P  N  F  F  F  N  C  S  A  L  R  H  L  Y  L  K  E  C  E  I  Q  L  P  C  F  F  K  G  F  N  K  L  I  R  L  I  L  K  Y  V  T  L  S  F  D  T  F  E  S  L  I  S  N  C </first_frame>
            <second_frame>  E  M  L  L  E  L  V  H  F  R  R  T  D  N  I  F  A  G  E  F  H  M  *  S  L  I  K  Q  Y  G  K  H  P  R  T  *  R  P  L  P  L  D  L  F  Q  F  L  I  V  S  S  G  Y  I  E  E  *  Y  *  R  S  P  S  I  L  L  V  *  *  C  V  L  M  L  I  V  *  I  F  P  S  T  L  I  I  F  N  I  L  S  L  N  F  H  L  L  I  L  Y  T  G  C  L  T  S  F  L  I  V  Q  H  *  G  I  C  I  S  R  N  V  K  Y  N  F  R  V  S  L  R  D  L  I  S  *  L  G  *  Y  *  N  M  S  R  Y  L  L  I  R  L  K  V  *  S  L  I   </second_frame>
            <third_frame>   R  C  C  *  S  *  Y  T  F  E  G  L  I  I  Y  L  L  E  N  S  T  C  E  V  *  S  N  S  M  E  N  T  R  G  L  D  V  P  Y  H  W  I  Y  F  N  S  *  *  F  P  Q  V  T  *  R  N  N  I  E  G  H  L  Q  Y  Y  *  S  N  S  V  S  *  C  *  S  F  E  F  F  P  R  H  *  S  S  S  T  F  C  P  *  T  S  I  Y  L  S  S  I  Q  V  A  *  L  L  F  *  L  F  S  I  E  A  F  V  S  Q  G  M  *  N  T  T  S  V  F  L  *  G  I  *  *  V  D  *  A  N  I  E  I  C  H  V  I  F  *  Y  V  *  K  F  D  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23284" stop="22859"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YICWRIPHVKFDQTVWKTPEDLTSPTIGFISILDSFLRLHRGIILKVTFNIISLIVCPDVDRLNFSLDTDHLQHFVLKLPFTYPLYRLPNFFFNCSALRHLYLKECEIQLPCFFKGFNKLIRLILKYVTLSFDTFESLISNC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="43981" PGL_stop="42851"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43981" e_stop="42851"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.926">
            <gDNA_exon_boundary e_start="43981" e_stop="42851" e_length="1131"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43981" stop="43371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43890" stop="43174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349726" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43890" stop="43490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43329" stop="43092"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43328" stop="42851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAAAGAAAATAGAAAGAACAAGAGAGAGAGGGAGAATCGAACGAGGAAGAAAGAAGAACAAAGCTTTGGGAATTTGCTTGCTTGATCACTAGTCGTCGGTGGAGGTAGGTTATGGTTTTCATGCTTTCATAGTAAACTCTTAATAGAGAATGATATGTATTGATCGTATTGTAAACCCTGCTATGTGCTTAATTGTATGCATGCATGAACGTGATTATATAATTGTGATTATATTAAGCATGATGAAGTTATTGAATCCCAAATCTTGATAAAAACCTAATCTCTTTTTAATGATGATGCCTTAGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAGTTGATAGAATGAGATTAGGGGATCGGGTGTCACGAACCGACACGTAGAGTTAGGGGATCGGGTATCACAAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGAATTAGGGGATCCGGTGTCACCAACCGACACGTAGATTTAGGGGATCGGGTGTCATGAACTGACACGTAGAATTAGGGGATCGGGTGTCACGAACCGACATGTAGATTTAGGGGATCGGGTGTCACGAACCGACACGTAGATTTAGGGGATCGGGTGTCACGAATCGACACATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTAAATGATATAGTGTTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGTTTTCTATTTGGAGTTGTCCGATGATATCTACTCAGTACCCGTGTTTCTTATTGACCTCTACTTTTATGTTTTCTTCTTGATATTTGTCGAGTGCAGCAAACGTGCCTTCGTCTTCAACTCAACAGTAATTCTAGCCAGTCTTCGTCACACCGGATCTTCAGGGTGAGCTAACGCTTCCAGCTTGGACT</gDNA_template>
            <first_frame> N  K  E  N  R  K  N  K  R  E  R  E  N  R  T  R  K  K  E  E  Q  S  F  G  N  L  L  A  *  S  L  V  V  G  G  G  R  L  W  F  S  C  F  H  S  K  L  L  I  E  N  D  M  Y  *  S  Y  C  K  P  C  Y  V  L  N  C  M  H  A  *  T  *  L  Y  N  C  D  Y  I  K  H  D  E  V  I  E  S  Q  I  L  I  K  T  *  S  L  F  N  D  D  A  L  V  R  E  K  A  *  *  T  K  V  M  R  L  M  M  P  W  *  G  R  R  L  D  E  L  I  E  *  D  *  G  I  G  C  H  E  P  T  R  R  V  R  G  S  G  I  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  N  *  G  I  R  C  H  Q  P  T  R  R  F  R  G  S  G  V  M  N  *  H  V  E  L  G  D  R  V  S  R  T  D  M  *  I  *  G  I  G  C  H  E  P  T  R  R  F  R  G  S  G  V  T  N  R  H  I  D  L  G  D  R  S  V  T  Y  R  H  K  R  I  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  K  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  *  M  I  *  C  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  F  S  I  W  S  C  P  M  I  S  T  Q  Y  P  C  F  L  L  T  S  T  F  M  F  S  S  *  Y  L  S  S  A  A  N  V  P  S  S  S  T  Q  Q  *  F  *  P  V  F  V  T  P  D  L  Q  G  E  L  T  L  P  A  W  T </first_frame>
            <second_frame>  I  K  K  I  E  R  T  R  E  R  G  R  I  E  R  G  R  K  K  N  K  A  L  G  I  C  L  L  D  H  *  S  S  V  E  V  G  Y  G  F  H  A  F  I  V  N  S  *  *  R  M  I  C  I  D  R  I  V  N  P  A  M  C  L  I  V  C  M  H  E  R  D  Y  I  I  V  I  I  L  S  M  M  K  L  L  N  P  K  S  *  *  K  P  N  L  F  L  M  M  M  P  *  *  G  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  G  E  G  L  M  S  *  *  N  E  I  R  G  S  G  V  T  N  R  H  V  E  L  G  D  R  V  S  Q  T  D  T  *  I  *  G  I  G  C  H  E  P  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  *  T  D  T  *  N  *  G  I  G  C  H  E  P  T  C  R  F  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  I  D  T  *  I  *  G  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  N  E  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  C  K  *  Y  S  V  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  C  F  L  F  G  V  V  R  *  Y  L  L  S  T  R  V  S  Y  *  P  L  L  L  C  F  L  L  D  I  C  R  V  Q  Q  T  C  L  R  L  Q  L  N  S  N  S  S  Q  S  S  S  H  R  I  F  R  V  S  *  R  F  Q  L  G   </second_frame>
            <third_frame>   *  R  K  *  K  E  Q  E  R  E  G  E  S  N  E  E  E  R  R  T  K  L  W  E  F  A  C  L  I  T  S  R  R  W  R  *  V  M  V  F  M  L  S  *  *  T  L  N  R  E  *  Y  V  L  I  V  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  *  A  *  *  S  Y  *  I  P  N  L  D  K  N  L  I  S  F  *  *  *  C  L  S  K  G  E  G  L  M  N  *  S  N  E  I  D  D  A  L  V  R  E  K  A  *  *  V  D  R  M  R  L  G  D  R  V  S  R  T  D  T  *  S  *  G  I  G  Y  H  K  P  T  R  R  F  R  G  S  G  V  T  N  R  H  V  E  L  G  D  P  V  S  P  T  D  T  *  I  *  G  I  G  C  H  E  L  T  R  R  I  R  G  S  G  V  T  N  R  H  V  D  L  G  D  R  V  S  R  T  D  T  *  I  *  G  I  G  C  H  E  S  T  H  R  F  R  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  M  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  V  N  D  I  V  F  V  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  V  F  Y  L  E  L  S  D  D  I  Y  S  V  P  V  F  L  I  D  L  Y  F  Y  V  F  F  L  I  F  V  E  C  S  K  R  A  F  V  F  N  S  T  V  I  L  A  S  L  R  H  T  G  S  S  G  *  A  N  A  S  S  L  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0304N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="43003" PGL_stop="43339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="43003" e_stop="43339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="43003" e_stop="43339" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43003" stop="43339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357033" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTGAGTAGATATCATCGGACAACTCCAAATAGAAAACAATATATACCAAGTAATATCATAAAATCAACTATGATACTCAACATGTAGCAACAACAAACACTATATCATTTACAATTACCGTCAAGTTCACACATGAGGACTCAAGCCTCAATACCATACTCATTTGGGAATTATGTTCATTAGATTGAGTATATTAACATCTTTCAAGATTCATTATCTTTATTTCTCTTGTGTCGGTACGTGACACTCCGCTCCCTCATATTCATTAATCCTCTTGTGTCGGTACGTGACACTCCGATCCCCTAAATCTATGTGTCGATTCGTGACACCCGATCC</gDNA_template>
            <first_frame> T  E  *  I  S  S  D  N  S  K  *  K  T  I  Y  T  K  *  Y  H  K  I  N  Y  D  T  Q  H  V  A  T  T  N  T  I  S  F  T  I  T  V  K  F  T  H  E  D  S  S  L  N  T  I  L  I  W  E  L  C  S  L  D  *  V  Y  *  H  L  S  R  F  I  I  F  I  S  L  V  S  V  R  D  T  P  L  P  H  I  H  *  S  S  C  V  G  T  *  H  S  D  P  L  N  L  C  V  D  S  *  H  P  I  </first_frame>
            <second_frame>  L  S  R  Y  H  R  T  T  P  N  R  K  Q  Y  I  P  S  N  I  I  K  S  T  M  I  L  N  M  *  Q  Q  Q  T  L  Y  H  L  Q  L  P  S  S  S  H  M  R  T  Q  A  S  I  P  Y  S  F  G  N  Y  V  H  *  I  E  Y  I  N  I  F  Q  D  S  L  S  L  F  L  L  C  R  Y  V  T  L  R  S  L  I  F  I  N  P  L  V  S  V  R  D  T  P  I  P  *  I  Y  V  S  I  R  D  T  R  S </second_frame>
            <third_frame>   *  V  D  I  I  G  Q  L  Q  I  E  N  N  I  Y  Q  V  I  S  *  N  Q  L  *  Y  S  T  C  S  N  N  K  H  Y  I  I  Y  N  Y  R  Q  V  H  T  *  G  L  K  P  Q  Y  H  T  H  L  G  I  M  F  I  R  L  S  I  L  T  S  F  K  I  H  Y  L  Y  F  S  C  V  G  T  *  H  S  A  P  S  Y  S  L  I  L  L  C  R  Y  V  T  L  R  S  P  K  S  M  C  R  F  V  T  P  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0304N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="45242" PGL_stop="45418"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45242" e_stop="45418"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="45242" e_stop="45418" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45242" stop="45418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGAGTGATAGCTATTATTCTATGAAAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACACATGCGCAAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTAACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  S  M  L  E  *  *  L  L  F  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  Q  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  E  P  Y  Q  C  L  S  D  S  Y  Y  S  M  K  I  P  L  R  V  R  S  Y  P  N  G  H  Q  T  L  S  H  M  R  K  A  Y  P  P  T  L  E  S  F  A  Q  T  N  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  S  H  I  N  A  *  V  I  A  I  I  L  *  K  F  R  *  G  *  E  A  I  P  M  A  T  K  L  Y  H  T  C  A  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0304N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="46723" PGL_stop="48795"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="46723" e_stop="48795"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="46723" e_stop="48795" e_length="2073"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46723" stop="47435"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46723" stop="47318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46723" stop="47248"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46794" stop="47473"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46794" stop="47152"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47243" stop="47901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47312" stop="48073"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47312" stop="47972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47922" stop="48480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48006" stop="48795"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48008" stop="48541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48082" stop="48779"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTTTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAAGATCCACCATCACTCCATCCTTGGAAACCGCGTGCCCCAAGAAGGACACTGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGATTTTTCTCCCTCAACATCTCCAATACCCTTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATGAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCATTCATCAAACTGATGAACGTAGCAGGGGCATTCGTAAGACCAAAAGACATTACCACAAATTCATAATGCCCATACCTAGTTCGAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTAATCGAACAAGTCATCAATGCGAGGAAGAGGATACTTGTTCTTAATAGTTACCTTGTTCAATTGTCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGCCCTTGCTCAACAACTCTTGAAGTTGGGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACTCGGTTCAAGATCAATACAGAAGTCGATATCCCTATCTAGGGGCATACCAGGAAGATTTGCAGGAAACACATCCAGAATCTCACGGACCACCGAAACCGACTCAATCGAAGGTACTTGGGTAGTTTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATACGCACTGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGTGGAGAAAACCAAGTCATACCTAGAATTACATCAAAATCATCCATTTCTAAGATAACCACATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTTACCCACCAGAGTAGAAACACGAATAGGTATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTTTCGTTTGTTTATCCGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAATTTTCCTATCACCCCGGCCGCTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTCTGTTTGGGACAATTCCTCCTAATATGTCCAGTCTCCCCACATCCATAACACTCTCTAGAGTCAAGCATGGGTCTCTCAGAGAAGTGTTGACTGGTCTGAGGTAGACCCCCAACTGTAGTCTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCGGAACCCTGTCCTCTAGAGTAAGAACCATTAAACTCACCTCCCTTTCGAAATCTCTTTGATGTCGATGCCATGGTGAATTCATCTGGCTTCACTCCTTCCACCTCTACCACGATATCTACCACTTCTTGGAAGGATTTTGCCGTAGCCGCTACTTGTAAGGCTGAAATCCGCAACTCTGACCTCAACCCCTTCACAAAACGACGAATCCGCTCTTGTGGACAGAAACAAAGTTGGGTGGCATATCTGGATAAGGCACAAAACTTAGCCTCATATGCATTGACCGACATCCTACCTTGCTCTAGGCTGAAGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATATTT</gDNA_template>
            <first_frame> E  S  L  D  E  S  A  V  V  A  S  *  P  N  K  A  P  Y  F  *  H  I  S  R  S  Y  P  I  L  H  C  L  N  L  R  K  I  H  H  H  S  I  L  G  N  R  V  P  Q  E  G  H  C  I  *  P  K  L  T  L  R  E  L  G  I  K  I  F  L  P  Q  H  L  Q  Y  P  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  E  Y  D  H  K  E  I  Q  I  W  L  K  N  P  I  H  Q  T  D  E  R  S  R  G  I  R  K  T  K  R  H  Y  H  K  F  I  M  P  I  P  S  S  K  S  S  L  W  H  I  R  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  R  K  R  I  L  V  L  N  S  Y  L  V  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  H  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  E  A  L  A  Q  Q  L  L  K  L  G  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  R  F  K  I  N  T  E  V  D  I  P  I  *  G  H  T  R  K  I  C  R  K  H  I  Q  N  L  T  D  H  R  N  R  L  N  R  R  Y  L  G  S  F  I  L  E  M  C  Q  E  S  *  T  P  F  T  N  H  F  L  S  T  K  K  G  D  D  T  H  W  I  G  S  V  V  T  L  P  H  *  R  I  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  W  R  K  P  S  H  T  *  N  Y  I  K  I  I  H  F  *  D  N  H  I  Y  I  S  V  A  P  H  K  V  H  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  Q  S  R  N  T  N  R  Y  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  C  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  F  V  C  L  S  V  A  P  T  M  L  *  C  S  G  S  N  F  P  I  T  P  A  A  L  V  T  T  I  T  S  T  T  T  S  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  F  G  T  I  P  P  N  M  S  S  L  P  T  S  I  T  L  S  R  V  K  H  G  S  L  R  E  V  L  T  G  L  R  *  T  P  N  C  S  L  *  *  R  L  N  G  S  N  *  V  T  S  G  T  L  S  S  R  V  R  T  I  K  L  T  S  L  S  K  S  L  *  C  R  C  H  G  E  F  I  W  L  H  S  F  H  L  Y  H  D  I  Y  H  F  L  E  G  F  C  R  S  R  Y  L  *  G  *  N  P  Q  L  *  P  Q  P  L  H  K  T  T  N  P  L  L  W  T  E  T  K  L  G  G  I  S  G  *  G  T  K  L  S  L  I  C  I  D  R  H  P  T  L  L  *  A  E  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  F </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  F  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  R  S  T  I  T  P  S  L  E  T  A  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  R  F  F  S  L  N  I  S  N  T  L  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  M  N  T  I  T  K  R  S  K  Y  G  L  K  I  P  F  I  K  L  M  N  V  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  V  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  G  R  G  Y  L  F  L  I  V  T  L  F  N  C  R  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  M  K  P  L  L  N  N  S  *  S  W  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  L  G  S  R  S  I  Q  K  S  I  S  L  S  R  G  I  P  G  R  F  A  G  N  T  S  R  I  S  R  T  T  E  T  D  S  I  E  G  T  W  V  V  S  S  L  R  C  A  K  K  A  K  H  P  L  L  T  I  F  L  A  R  R  K  E  M  I  R  T  G  L  E  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  N  Q  V  I  P  R  I  T  S  K  S  S  I  S  K  I  T  T  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  L  P  T  R  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  Y  P  L  P  L  P  C  C  D  V  V  A  P  I  F  L  S  P  R  P  L  W  *  P  P  L  P  R  P  P  R  P  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  L  L  I  C  P  V  S  P  H  P  *  H  S  L  E  S  S  M  G  L  S  E  K  C  *  L  V  *  G  R  P  P  T  V  V  C  S  E  D  *  M  G  R  T  E  *  P  P  E  P  C  P  L  E  *  E  P  L  N  S  P  P  F  R  N  L  F  D  V  D  A  M  V  N  S  S  G  F  T  P  S  T  S  T  T  I  S  T  T  S  W  K  D  F  A  V  A  A  T  C  K  A  E  I  R  N  S  D  L  N  P  F  T  K  R  R  I  R  S  C  G  Q  K  Q  S  W  V  A  Y  L  D  K  A  Q  N  L  A  S  Y  A  L  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y   </second_frame>
            <third_frame>   I  P  *  R  I  G  G  S  S  *  L  T  Q  Q  S  S  L  F  L  T  H  *  *  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  W  K  P  R  A  P  R  R  T  L  H  L  A  K  T  H  T  *  R  T  W  H  K  D  F  S  P  S  T  S  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  Q  R  D  P  N  M  A  *  K  S  H  S  S  N  *  *  T  *  Q  G  H  S  *  D  Q  K  T  L  P  Q  I  H  N  A  H  T  *  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  N  R  T  S  H  Q  C  E  E  E  D  T  C  S  *  *  L  P  C  S  I  V  G  S  L  C  T  S  E  N  S  H  P  S  S  S  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  P  C  S  T  T  L  E  V  G  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  S  V  Q  D  Q  Y  R  S  R  Y  P  Y  L  G  A  Y  Q  E  D  L  Q  E  T  H  P  E  S  H  G  P  P  K  P  T  Q  S  K  V  L  G  *  F  H  P  *  D  V  P  R  K  L  N  T  L  Y  *  P  F  S  *  H  E  E  R  R  *  Y  A  L  D  W  K  C  S  H  P  P  T  L  T  D  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  V  E  K  T  K  S  Y  L  E  L  H  Q  N  H  P  F  L  R  *  P  H  L  H  K  C  C  S  P  Q  S  S  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  Y  P  P  E  *  K  H  E  *  V  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  M  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  F  R  L  F  I  R  C  P  Y  H  V  V  M  *  W  L  Q  F  S  Y  H  P  G  R  F  G  D  H  H  Y  L  D  H  H  V  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  S  V  W  D  N  S  S  *  Y  V  Q  S  P  H  I  H  N  T  L  *  S  Q  A  W  V  S  Q  R  S  V  D  W  S  E  V  D  P  Q  L  *  S  V  V  K  T  E  W  V  E  L  S  N  L  R  N  P  V  L  *  S  K  N  H  *  T  H  L  P  F  E  I  S  L  M  S  M  P  W  *  I  H  L  A  S  L  L  P  P  L  P  R  Y  L  P  L  L  G  R  I  L  P  *  P  L  L  V  R  L  K  S  A  T  L  T  S  T  P  S  Q  N  D  E  S  A  L  V  D  R  N  K  V  G  W  H  I  W  I  R  H  K  T  *  P  H  M  H  *  P  T  S  Y  L  A  L  G  *  R  T  H  P  F  S  Y  P  S  K  S  G  G  Y  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48464" stop="48793"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRNLFDVDAMVNSSGFTPSTSTTISTTSWKDFAVAATCKAEIRNSDLNPFTKRRIRSCGQKQSWVAYLDKAQNLASYALTDILPCSRLKNSSLFLSLKVRGIY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="47450" stop="47695"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVLGSRSIQKSISLSRGIPGRFAGNTSRISRTTETDSIEGTWVVSSLRCAKKAKHPLLTIFLARRKEMIRTGLEV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46987" stop="47226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINEYDHKEIQIWLKNPIHQTDERSRGIRKTKRHYHKFIMPIPSSKSSLWHIRCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48154" stop="48387"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CSGSNFPITPAALVTTITSTTTSSRITASTMTTSTSSYWGSITLFGTIPPNMSSLPTSITLSRVKHGSLREVLTGLR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="48739" PGL_stop="47295"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="48739" e_stop="48567"/>
            <exon e_start="47822" e_stop="47295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.936"/>
          <exon-only e_score="0.902"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.936">
            <gDNA_exon_boundary e_start="48739" e_stop="48567" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="48566" i_stop="47823" i_length="744"/>
          </intron>
          <exon e_serial="2" e_score="0.902">
            <gDNA_exon_boundary e_start="47822" e_stop="47295" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48739" stop="48567"/>
              <exon start="47822" stop="47295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCGGTCAATGCATATGAGGCTAAGTTTTGTGCCTTATCCAGATATGCCACCCAACTTTGTTTCTGTCCACAAGAGCGGATTCGTCGTTTTGTGAAGGGGTTGAGGTCAGAGTTGCGGATTTCAGCCTTACAAGTAGCGGCTACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGATGTAATTCTAGGTATGACTTGGTTTTCTCCACAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGACTACACTTCCAATCCAGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATGAAACTACCCAAGTACCTTCGATTGAGTCGGTTTCGGTGGTCCGTGAGATTCTGGATGTGTTTCCTGCAAATCTTCCTGGTATGCCCCTAGATAGGGATATCGACTTCTGTATTGATCTTGAACCGAGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCCCAACTTCAAGAGTTGTTGAGCAAGGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTGAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACC</gDNA_template>
            <first_frame> A  R  *  D  V  G  Q  C  I  *  G  *  V  L  C  L  I  Q  I  C  H  P  T  L  F  L  S  T  R  A  D  S  S  F  C  E  G  V  E  V  R  V  A  D  F  S  L  T  S  S  G  Y  G  K  I  L  P  R :   N  G  *  F  *  C  N  S  R  Y  D  L  V  F  S  T  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  Q  S  S  A  Y  H  L  L  S  S  C  *  E  N  G  *  *  R  V  F  S  F  L  G  T  S  Q  G  *  N  Y  P  S  T  F  D  *  V  G  F  G  G  P  *  D  S  G  C  V  S  C  K  S  S  W  Y  A  P  R  *  G  Y  R  L  L  Y  *  S  *  T  E  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  P  T  S  R  V  V  E  Q  G  L  H  *  T  K  C  I  S  L  G  C  S  G  F  V  C  E  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  C  P  Q  E  R  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  V  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  I  L  G  M  T  W  F  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  N  P  V  R  I  I  S  F  L  R  A  K  K  M  V  S  K  G  C  L  A  F  L  A  H  L  K  D  E  T  T  Q  V  P  S  I  E  S  V  S  V  V  R  E  I  L  D  V  F  P  A  N  L  P  G  M  P  L  D  R  D  I  D  F  C  I  D  L  E  P  S  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  R  S  M  H  M  R  L  S  F  V  P  Y  P  D  M  P  P  N  F  V  S  V  H  K  S  G  F  V  V  L  *  R  G  *  G  Q  S  C  G  F  Q  P  Y  K  *  R  L  R  Q  N  P  S  K  :  K  W  M  I  L  M  *  F  *  V  *  L  G  F  L  H  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  I  R  *  C  G  R  V  T  T  L  P  I  Q  C  V  S  S  P  F  F  V  L  R  K  W  L  V  K  G  V  *  L  S  W  H  I  S  R  M  K  L  P  K  Y  L  R  L  S  R  F  R  W  S  V  R  F  W  M  C  F  L  Q  I  F  L  V  C  P  *  I  G  I  S  T  S  V  L  I  L  N  R  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  P  N  F  K  S  C  *  A  R  A  S  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="48738" stop="48567"/>
                    <exon start="47822" stop="47296"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFCALSRYATQLCFCPQERIRRFVKGLRSELRISALQVAATAKSFQEMDDFDVILGMTWFSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTSNPVRIISFLRAKKMVSKGCLAFLAHLKDETTQVPSIESVSVVREILDVFPANLPGMPLDRDIDFCIDLEPSTRPISIPPYRMAPAELRELKAQLQELLSKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="51120" PGL_stop="51590"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51120" e_stop="51590"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.900"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.900">
            <gDNA_exon_boundary e_start="51120" e_stop="51590" e_length="471"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51120" stop="51590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236652" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGATTCTCCCTCTCTCTCTTGTTCTTTCTATTTTCTTTATTCCAACCCTCTTTCTTTTACCCTAATTAGTATATAATTAAGAATAAAAAATGACAATAATAACCCACTAATTAACTTAAGGTTACCTCTTTTAACCCCCAAGTAATTAGACTTATTAACATTAACCCTCTAACTTTATAATTAAAGTAGGAATAGTCCAAAACGTCCCTTAAAACGTGTAAAGAAATCCGACCCAGACTGGGATTACGCAACCTGTGACGGCCCGTTGTGCCTGCGACGGTCCGTCCTGCAGGTCGTTACAAGGTTCAGAGAATGGATTTTCATTGAAGGCTCTGTTATGGTCCGTCACGCTTGTGACGGTCCGTCCTGCCATTCCGTCACGAAGTTCAGAGAGTCGATTTTCAGTACCCAATTTCAGAATTTCTAAGTGTTTTGAAATGAGACCCCTCGACGGTCCGTCGTGCCCATGA</gDNA_template>
            <first_frame> S  I  L  P  L  S  L  V  L  S  I  F  F  I  P  T  L  F  L  L  P  *  L  V  Y  N  *  E  *  K  M  T  I  I  T  H  *  L  T  *  G  Y  L  F  *  P  P  S  N  *  T  Y  *  H  *  P  S  N  F  I  I  K  V  G  I  V  Q  N  V  P  *  N  V  *  R  N  P  T  Q  T  G  I  T  Q  P  V  T  A  R  C  A  C  D  G  P  S  C  R  S  L  Q  G  S  E  N  G  F  S  L  K  A  L  L  W  S  V  T  L  V  T  V  R  P  A  I  P  S  R  S  S  E  S  R  F  S  V  P  N  F  R  I  S  K  C  F  E  M  R  P  L  D  G  P  S  C  P  * </first_frame>
            <second_frame>  R  F  S  L  S  L  L  F  F  L  F  S  L  F  Q  P  S  F  F  Y  P  N  *  Y  I  I  K  N  K  K  *  Q  *  *  P  T  N  *  L  K  V  T  S  F  N  P  Q  V  I  R  L  I  N  I  N  P  L  T  L  *  L  K  *  E  *  S  K  T  S  L  K  T  C  K  E  I  R  P  R  L  G  L  R  N  L  *  R  P  V  V  P  A  T  V  R  P  A  G  R  Y  K  V  Q  R  M  D  F  H  *  R  L  C  Y  G  P  S  R  L  *  R  S  V  L  P  F  R  H  E  V  Q  R  V  D  F  Q  Y  P  I  S  E  F  L  S  V  L  K  *  D  P  S  T  V  R  R  A  H   </second_frame>
            <third_frame>   D  S  P  S  L  S  C  S  F  Y  F  L  Y  S  N  P  L  S  F  T  L  I  S  I  *  L  R  I  K  N  D  N  N  N  P  L  I  N  L  R  L  P  L  L  T  P  K  *  L  D  L  L  T  L  T  L  *  L  Y  N  *  S  R  N  S  P  K  R  P  L  K  R  V  K  K  S  D  P  D  W  D  Y  A  T  C  D  G  P  L  C  L  R  R  S  V  L  Q  V  V  T  R  F  R  E  W  I  F  I  E  G  S  V  M  V  R  H  A  C  D  G  P  S  C  H  S  V  T  K  F  R  E  S  I  F  S  T  Q  F  Q  N  F  *  V  F  *  N  E  T  P  R  R  S  V  V  P  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51342" stop="51590"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RNPTQTGITQPVTARCACDGPSCRSLQGSENGFSLKALLWSVTLVTVRPAIPSRSSESRFSVPNFRISKCFEMRPLDGPSCP*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51305" stop="51547"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SRNSPKRPLKRVKKSDPDWDYATCDGPLCLRRSVLQVVTRFREWIFIEGSVMVRHACDGPSCHSVTKFRESIFSTQFQNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="63407" PGL_stop="62516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="63407" e_stop="62696"/>
            <exon e_start="62600" e_stop="62516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.995" e_score="0.906"/>
          <exon-only e_score="0.871"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="63407" e_stop="62696" e_length="712"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.995">
            <gDNA_intron_boundary i_start="62695" i_stop="62601" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="0.871">
            <gDNA_exon_boundary e_start="62600" e_stop="62516" e_length="85"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="63407" stop="62696"/>
              <exon start="62600" stop="62516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548274" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGAGATGTTGTAAGAGTTAGTACACTTTCGAAGGACTGACAATATATTTGCTGCAAAATTCCACATGTGAAGTTTGATCAAACAGTGTGGAAAACACCTGAGTACTTGACATCCCCTACCATTGGATCTATTCCAATTCTTGATAGTTTCCTCAAGTTTCATAGAGGAATAATATTGAAGGTCACCCTCAATATTATTAATCTAATAGTGTTTCCTAATGTTGATCGTTTGATTTTTTCCCTCGATACTGATCACATTCAACATTTTGTCCTTAAACTTCCATTTACTTATCCTCCATATAGTTTGCCTAACTTCATTTTTAATTGTTCTACATTGAGGCATTTGTATTTCAAGGAATGTGAAATACAACTTCCATGTTTGTTTCAGGGATTTAATAAGTTGATTAGCCTAATATTTAAATCTGTCATTTTATCTTCTGATGTGTTTGAAAGTTTGACCTCTAATTGCCCATTACTTGAGGATTTGGTGCTAAAAGACATAGACAATTCGTACCTCATGAGTATTAATGCTCCTAAGCTAAGGTCATTTGTCTTTCGTGGCGATATACAATTGATACATCTTGAAAATGTCTCTGTTCTTTCCAATGTTCTGTATGCGCCTAGAGAATTAGTTCTAGAGGACAAAGATGATTTTGTCAATATTTTTTCGTCTATTCCTGCTCTACAGTGTTTCAAATAGGATTTTTTTGAG : GTCGATAATGGATAACCTAAAGTTATACCAACCAGGCTTCCTTTAGTTCTTAACTGTCTGAAACGCCTATTAATGCCTTGGACTA</gDNA_template>
            <first_frame> S  R  C  C  K  S  *  Y  T  F  E  G  L  T  I  Y  L  L  Q  N  S  T  C  E  V  *  S  N  S  V  E  N  T  *  V  L  D  I  P  Y  H  W  I  Y  S  N  S  *  *  F  P  Q  V  S  *  R  N  N  I  E  G  H  P  Q  Y  Y  *  S  N  S  V  S  *  C  *  S  F  D  F  F  P  R  Y  *  S  H  S  T  F  C  P  *  T  S  I  Y  L  S  S  I  *  F  A  *  L  H  F  *  L  F  Y  I  E  A  F  V  F  Q  G  M  *  N  T  T  S  M  F  V  S  G  I  *  *  V  D  *  P  N  I  *  I  C  H  F  I  F  *  C  V  *  K  F  D  L  *  L  P  I  T  *  G  F  G  A  K  R  H  R  Q  F  V  P  H  E  Y  *  C  S  *  A  K  V  I  C  L  S  W  R  Y  T  I  D  T  S  *  K  C  L  C  S  F  Q  C  S  V  C  A  *  R  I  S  S  R  G  Q  R  *  F  C  Q  Y  F  F  V  Y  S  C  S  T  V  F  Q  I  G  F  F  *   : G  R  *  W  I  T  *  S  Y  T  N  Q  A  S  F  S  S  *  L  S  E  T  P  I  N  A  L  D   </first_frame>
            <second_frame>  R  D  V  V  R  V  S  T  L  S  K  D  *  Q  Y  I  C  C  K  I  P  H  V  K  F  D  Q  T  V  W  K  T  P  E  Y  L  T  S  P  T  I  G  S  I  P  I  L  D  S  F  L  K  F  H  R  G  I  I  L  K  V  T  L  N  I  I  N  L  I  V  F  P  N  V  D  R  L  I  F  S  L  D  T  D  H  I  Q  H  F  V  L  K  L  P  F  T  Y  P  P  Y  S  L  P  N  F  I  F  N  C  S  T  L  R  H  L  Y  F  K  E  C  E  I  Q  L  P  C  L  F  Q  G  F  N  K  L  I  S  L  I  F  K  S  V  I  L  S  S  D  V  F  E  S  L  T  S  N  C  P  L  L  E  D  L  V  L  K  D  I  D  N  S  Y  L  M  S  I  N  A  P  K  L  R  S  F  V  F  R  G  D  I  Q  L  I  H  L  E  N  V  S  V  L  S  N  V  L  Y  A  P  R  E  L  V  L  E  D  K  D  D  F  V  N  I  F  S  S  I  P  A  L  Q  C  F  K  *  D  F  F  E  :  V  D  N  G  *  P  K  V  I  P  T  R  L  P  L  V  L  N  C  L  K  R  L  L  M  P  W  T  </second_frame>
            <third_frame>   E  M  L  *  E  L  V  H  F  R  R  T  D  N  I  F  A  A  K  F  H  M  *  S  L  I  K  Q  C  G  K  H  L  S  T  *  H  P  L  P  L  D  L  F  Q  F  L  I  V  S  S  S  F  I  E  E  *  Y  *  R  S  P  S  I  L  L  I  *  *  C  F  L  M  L  I  V  *  F  F  P  S  I  L  I  T  F  N  I  L  S  L  N  F  H  L  L  I  L  H  I  V  C  L  T  S  F  L  I  V  L  H  *  G  I  C  I  S  R  N  V  K  Y  N  F  H  V  C  F  R  D  L  I  S  *  L  A  *  Y  L  N  L  S  F  Y  L  L  M  C  L  K  V  *  P  L  I  A  H  Y  L  R  I  W  C  *  K  T  *  T  I  R  T  S  *  V  L  M  L  L  S  *  G  H  L  S  F  V  A  I  Y  N  *  Y  I  L  K  M  S  L  F  F  P  M  F  C  M  R  L  E  N  *  F  *  R  T  K  M  I  L  S  I  F  F  R  L  F  L  L  Y  S  V  S  N  R  I  F  L  R :   S  I  M  D  N  L  K  L  Y  Q  P  G  F  L  *  F  L  T  V  *  N  A  Y  *  C  L  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="63367" stop="62708"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QYICCKIPHVKFDQTVWKTPEYLTSPTIGSIPILDSFLKFHRGIILKVTLNIINLIVFPNVDRLIFSLDTDHIQHFVLKLPFTYPPYSLPNFIFNCSTLRHLYFKECEIQLPCLFQGFNKLISLIFKSVILSSDVFESLTSNCPLLEDLVLKDIDNSYLMSINAPKLRSFVFRGDIQLIHLENVSVLSNVLYAPRELVLEDKDDFVNIFSSIPALQCFK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="73303" PGL_stop="73889"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73303" e_stop="73889"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.901"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.901">
            <gDNA_exon_boundary e_start="73303" e_stop="73889" e_length="587"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73303" stop="73889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73303" stop="73889"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTCTATAAGAATGGTGTGGATCAAATCATCAACACGGGGCACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCCATTATTTCTTCTTTAGCCTCTCCTCGCAACACTTTATCTTGGATCCGGATCAATTTCTCATCATTAAACTGCTTTCCCTTAATCTTGTCAAGAAAAGAAGATCTTTCCTCCACACAAGCCAACAATCCTCCCTTCTCATTTACTTCTAACCTCATAAGGTCGTTAGCCAGAGTCTGAACCTCTCTAGCCAATGGACGTCTAGAAACTTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCGTCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCGTAGTCCTTCAGTAGTTCCATCCATCTCTTCTGTCTCAAATTCAAATCTTTTTGAGTAAAGACATACTGTAGGCTACGATGATCCGTGTATACTTCACACTTAACCCCATATAGATAGTGTCTCCATTGCTTTAAGGCAAACACTACCGCAGCCAATTCCAAATCATGGGTCGGATAATTACATTCGTGCACCTTTAATTGC</gDNA_template>
            <first_frame> P  L  *  E  W  C  G  S  N  H  Q  H  G  A  H  I  P  F  P  *  F  S  K  H  L  P  H  P  L  F  L  L  *  P  L  L  A  T  L  Y  L  G  S  G  S  I  S  H  H  *  T  A  F  P  *  S  C  Q  E  K  K  I  F  P  P  H  K  P  T  I  L  P  S  H  L  L  L  T  S  *  G  R  *  P  E  S  E  P  L  *  P  M  D  V  *  K  L  A  S  E  L  D  F  P  C  S  L  P  F  Y  L  R  R  L  P  Q  H  *  P  F  P  D  D  T  R  *  *  Y  R  S  P  S  V  V  P  S  I  S  S  V  S  N  S  N  L  F  E  *  R  H  T  V  G  Y  D  D  P  C  I  L  H  T  *  P  H  I  D  S  V  S  I  A  L  R  Q  T  L  P  Q  P  I  P  N  H  G  S  D  N  Y  I  R  A  P  L  I   </first_frame>
            <second_frame>  L  Y  K  N  G  V  D  Q  I  I  N  T  G  H  T  Y  P  S  L  N  S  Q  N  T  F  L  I  H  Y  F  F  F  S  L  S  S  Q  H  F  I  L  D  P  D  Q  F  L  I  I  K  L  L  S  L  N  L  V  K  K  R  R  S  F  L  H  T  S  Q  Q  S  S  L  L  I  Y  F  *  P  H  K  V  V  S  Q  S  L  N  L  S  S  Q  W  T  S  R  N  L  Q  V  S  *  T  S  H  A  P  C  L  S  T  *  G  V  C  H  N  I  S  L  S  R  M  I  Q  D  S  D  I  V  V  L  Q  *  F  H  P  S  L  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  A  T  M  I  R  V  Y  F  T  L  N  P  I  *  I  V  S  P  L  L  *  G  K  H  Y  R  S  Q  F  Q  I  M  G  R  I  I  T  F  V  H  L  *  L  </second_frame>
            <third_frame>   S  I  R  M  V  W  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  I  S  S  L  A  S  P  R  N  T  L  S  W  I  R  I  N  F  S  S  L  N  C  F  P  L  I  L  S  R  K  E  D  L  S  S  T  Q  A  N  N  P  P  F  S  F  T  S  N  L  I  R  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  *  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  S  S  S  I  H  L  F  C  L  K  F  K  S  F  *  V  K  T  Y  C  R  L  R  *  S  V  Y  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  K  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  H  S  C  T  F  N  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73305" stop="73562"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>255</number_coding_nucleotides>
                  <number_encoded_amino_acids>85</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SIRMVWIKSSTRGTHTLPLILKTPSSSIISSLASPRNTLSWIRINFSSLNCFPLILSRKEDLSSTQANNPPFSFTSNLIRSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73304" stop="73534"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LYKNGVDQIINTGHTYPSLNSQNTFLIHYFFFSLSSQHFILDPDQFLIIKLLSLNLVKKRRSFLHTSQQSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="75109" PGL_stop="75439"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75109" e_stop="75439"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="75109" e_stop="75439" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75109" stop="75439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATGACAATCCAAGATCGCAAAATTCGCAAAAATCCAAGTCATACCCAGAATTACTTCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTTACCAAACAAGACCTATATACTTTTTCAACTACCACAGACTCACCCACCGGAAAAGACACACGAATAGGTATGTCAAGCAATTCACAATGTAAATTAAGACCTTTAGCAAATGCGGAAGATACATATGAAAATGTAGAGTCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  S  Q  F  *  H  D  N  P  R  S  Q  N  S  Q  K  S  K  S  Y  P  E  L  L  Q  N  Q  P  F  L  R  *  P  S  L  H  K  Y  C  S  P  Q  K  L  P  N  K  T  Y  I  L  F  Q  L  P  Q  T  H  P  P  E  K  T  H  E  *  V  C  Q  A  I  H  N  V  N  *  D  L  *  Q  M  R  K  I  H  M  K  M  *  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  H  S  F  S  M  T  I  Q  D  R  K  I  R  K  N  P  S  H  T  Q  N  Y  F  K  I  N  H  F  *  D  N  Q  V  Y  I  S  I  A  P  H  K  S  Y  Q  T  R  P  I  Y  F  F  N  Y  H  R  L  T  H  R  K  R  H  T  N  R  Y  V  K  Q  F  T  M  *  I  K  T  F  S  K  C  G  R  Y  I  *  K  C  R  V  R  V  K  *  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  *  Q  S  K  I  A  K  F  A  K  I  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  K  D  T  R  I  G  M  S  S  N  S  Q  C  K  L  R  P  L  A  N  A  E  D  T  Y  E  N  V  E  S  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="75240" stop="75437"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTKQDLYTFSTTTDSPTGKDTRIGMSSNSQCKLRPLANAEDTYENVESGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="76037" PGL_stop="76826"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76037" e_stop="76826"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.908"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.908">
            <gDNA_exon_boundary e_start="76037" e_stop="76826" e_length="790"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76037" stop="76755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76040" stop="76702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76394" stop="76826"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCGAATCCGCTCTTGTGGACTGAAACAAAGTTGGGTGGCATACCTGGATAATGCACAAAACTTAGCCTCATATGCAGTAACCGACATCCTACCATGCTCTAGGCTCAAAAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGAATATACTTCTCCATAAACAAGCTAGAGAATGATGCCCAAGTCATAGGTGGTGCCTCTGTTGGTTGACACTCAACATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATCCTATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCTGCTTCAGCACCCTTGAAGACTGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTACAGGCCCTGTAGTCAGACGAGGAAATGTGCCTATTTCCAATGAATCATCCATGCGGGGAGCCACAGTAGCCGCATGTTGTACTTCCGGAGCCTGAGGTGCTGGTGTAGAAAACACTGGAGGCGCTTGGCCTTGATCAGATAACCCGCTAAGATAAGCAAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCAATTCCTCATTCTGTACTTGTTCATTTTCCCCATCCTCCCCTTCTCTTACTACTTCTTCAGTCGGTGGAGGATTCACCGCCCTAGTATCAGATGATCTAGGTGCTCGTCCTCTTGCTCTAGAGGACATCCTCCCACGACCTCTACCACGGCTTCTTGCCGCTACTCTTC</gDNA_template>
            <first_frame> A  N  P  L  L  W  T  E  T  K  L  G  G  I  P  G  *  C  T  K  L  S  L  I  C  S  N  R  H  P  T  M  L  *  A  Q  K  L  I  S  F  P  I  P  Q  S  P  G  N  I  L  L  H  K  Q  A  R  E  *  C  P  S  H  R  W  C  L  C  W  L  T  L  N  M  *  P  P  P  H  F  G  V  P  L  K  L  I  S  H  K  L  H  T  K  P  F  Y  Y  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  A  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  T  G  P  V  V  R  R  G  N  V  P  I  S  N  E  S  S  M  R  G  A  T  V  A  A  C  C  T  S  G  A  *  G  A  G  V  E  N  T  G  G  A  W  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  N  S  S  F  C  T  C  S  F  S  P  S  S  P  S  L  T  T  S  S  V  G  G  G  F  T  A  L  V  S  D  D  L  G  A  R  P  L  A  L  E  D  I  L  P  R  P  L  P  R  L  L  A  A  T  L  </first_frame>
            <second_frame>  R  I  R  S  C  G  L  K  Q  S  W  V  A  Y  L  D  N  A  Q  N  L  A  S  Y  A  V  T  D  I  L  P  C  S  R  L  K  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  K  L  E  N  D  A  Q  V  I  G  G  A  S  V  G  *  H  S  T  C  D  R  H  H  I  L  A  F  P  *  N  *  *  V  T  N  S  T  P  N  R  S  T  I  L  S  C  V  V  A  R  D  S  Q  P  E  N  H  K  H  P  L  L  Q  H  P  *  R  L  E  V  S  I  S  R  T  Y  *  K  V  H  A  D  H  L  S  L  Q  A  L  *  S  D  E  E  M  C  L  F  P  M  N  H  P  C  G  E  P  Q  *  P  H  V  V  L  P  E  P  E  V  L  V  *  K  T  L  E  A  L  G  L  D  Q  I  T  R  *  D  K  Q  E  P  D  *  S  S  L  G  *  V  G  V  A  I  P  H  S  V  L  V  H  F  P  H  P  P  L  L  L  L  L  L  Q  S  V  E  D  S  P  P  *  Y  Q  M  I  *  V  L  V  L  L  L  *  R  T  S  S  H  D  L  Y  H  G  F  L  P  L  L  F </second_frame>
            <third_frame>   E  S  A  L  V  D  *  N  K  V  G  W  H  T  W  I  M  H  K  T  *  P  H  M  Q  *  P  T  S  Y  H  A  L  G  S  K  T  H  L  F  S  Y  P  S  K  S  G  E  Y  T  S  P  *  T  S  *  R  M  M  P  K  S  *  V  V  P  L  L  V  D  T  Q  H  V  T  A  T  T  F  W  R  S  L  E  T  D  K  S  Q  T  P  H  Q  T  V  L  L  S  Y  L  V  *  *  L  V  T  V  N  Q  K  I  I  S  I  L  C  F  S  T  L  E  D  W  R  F  Q  F  Q  E  L  T  E  K  F  M  L  I  I  C  H  Y  R  P  C  S  Q  T  R  K  C  A  Y  F  Q  *  I  I  H  A  G  S  H  S  S  R  M  L  Y  F  R  S  L  R  C  W  C  R  K  H  W  R  R  L  A  L  I  R  *  P  A  K  I  S  K  N  L  I  D  H  L  W  G  R  L  G  W  Q  F  L  I  L  Y  L  F  I  F  P  I  L  P  F  S  Y  Y  F  F  S  R  W  R  I  H  R  P  S  I  R  *  S  R  C  S  S  S  C  S  R  G  H  P  P  T  T  S  T  T  A  S  C  R  Y  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76038" stop="76247"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RIRSCGLKQSWVAYLDNAQNLASYAVTDILPCSRLKNSSLFLSLKVRGIYFSINKLENDAQVIGGASVG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76628" stop="76825"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGNSSFCTCSFSPSSPSLTTSSVGGGFTALVSDDLGARPLALEDILPRPLPRLLAATL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="76759" PGL_stop="76207"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76759" e_stop="76207"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.922"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.922">
            <gDNA_exon_boundary e_start="76759" e_stop="76207" e_length="553"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76759" stop="76207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329287" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACCTAGATCATCTGATACTAGGGCGGTGAATCCTCCACCGACTGAAGAAGTAGTAAGAGAAGGGGAGGATGGGGAAAATGAACAAGTACAGAATGAGGAATTGCCACCCCAACCTACCCCAGAGATGATCAATCAGGTTCTTGCTTATCTTAGCGGGTTATCTGATCAAGGCCAAGCGCCTCCAGTGTTTTCTACACCAGCACCTCAGGCTCCGGAAGTACAACATGCGGCTACTGTGGCTCCCCGCATGGATGATTCATTGGAAATAGGCACATTTCCTCGTCTGACTACAGGGCCTGTAATGACAAATGATCAGCATGAACTTTTCAGTAAGTTCTTGAAATTGAAACCTCCAGTCTTCAAGGGTGCTGAAGCAGAGGATGCTTATGATTTTCTGGTTGACTGTCACGAGCTACTACACAAGATAGGATAGTAGAACGGTTTGGTGTGGAGTTTGTGACTTATCAGTTTCAAGGGAACGCCAAAATGTGGTGGCGGTCACATGTTGAGTGTCAACCAACAGAGGCACCACCTATGACTTGGGCATCATTCT</gDNA_template>
            <first_frame> T  *  I  I  *  Y  *  G  G  E  S  S  T  D  *  R  S  S  K  R  R  G  G  W  G  K  *  T  S  T  E  *  G  I  A  T  P  T  Y  P  R  D  D  Q  S  G  S  C  L  S  *  R  V  I  *  S  R  P  S  A  S  S  V  F  Y  T  S  T  S  G  S  G  S  T  T  C  G  Y  C  G  S  P  H  G  *  F  I  G  N  R  H  I  S  S  S  D  Y  R  A  C  N  D  K  *  S  A  *  T  F  Q  *  V  L  E  I  E  T  S  S  L  Q  G  C  *  S  R  G  C  L  *  F  S  G  *  L  S  R  A  T  T  Q  D  R  I  V  E  R  F  G  V  E  F  V  T  Y  Q  F  Q  G  N  A  K  M  W  W  R  S  H  V  E  C  Q  P  T  E  A  P  P  M  T  W  A  S  F  </first_frame>
            <second_frame>  P  R  S  S  D  T  R  A  V  N  P  P  P  T  E  E  V  V  R  E  G  E  D  G  E  N  E  Q  V  Q  N  E  E  L  P  P  Q  P  T  P  E  M  I  N  Q  V  L  A  Y  L  S  G  L  S  D  Q  G  Q  A  P  P  V  F  S  T  P  A  P  Q  A  P  E  V  Q  H  A  A  T  V  A  P  R  M  D  D  S  L  E  I  G  T  F  P  R  L  T  T  G  P  V  M  T  N  D  Q  H  E  L  F  S  K  F  L  K  L  K  P  P  V  F  K  G  A  E  A  E  D  A  Y  D  F  L  V  D  C  H  E  L  L  H  K  I  G  *  *  N  G  L  V  W  S  L  *  L  I  S  F  K  G  T  P  K  C  G  G  G  H  M  L  S  V  N  Q  Q  R  H  H  L  *  L  G  H  H  S </second_frame>
            <third_frame>   L  D  H  L  I  L  G  R  *  I  L  H  R  L  K  K  *  *  E  K  G  R  M  G  K  M  N  K  Y  R  M  R  N  C  H  P  N  L  P  Q  R  *  S  I  R  F  L  L  I  L  A  G  Y  L  I  K  A  K  R  L  Q  C  F  L  H  Q  H  L  R  L  R  K  Y  N  M  R  L  L  W  L  P  A  W  M  I  H  W  K  *  A  H  F  L  V  *  L  Q  G  L  *  *  Q  M  I  S  M  N  F  S  V  S  S  *  N  *  N  L  Q  S  S  R  V  L  K  Q  R  M  L  M  I  F  W  L  T  V  T  S  Y  Y  T  R  *  D  S  R  T  V  W  C  G  V  C  D  L  S  V  S  R  E  R  Q  N  V  V  A  V  T  C  *  V  S  T  N  R  G  T  T  Y  D  L  G  I  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76758" stop="76327"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PRSSDTRAVNPPPTEEVVREGEDGENEQVQNEELPPQPTPEMINQVLAYLSGLSDQGQAPPVFSTPAPQAPEVQHAATVAPRMDDSLEIGTFPRLTTGPVMTNDQHELFSKFLKLKPPVFKGAEAEDAYDFLVDCHELLHKIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="77117" PGL_stop="76833"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77117" e_stop="76833"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="77117" e_stop="76833" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77117" stop="76833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGAGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTCCATTCTTTCTTTCTTTCTTTCGTGCTATTACTTGGGTCCAATTGGTATCTAGGTGATACAAATTGGTATCTGACCATCTTCACTCTATTTCGCAGATGGTTAGAACTAGAGCAACAACCGCGCCAACATCAACATCGGCAAGACAAGAAGCGTCTAAGCCAGCCACTGGGCTGTAG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  E  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  F  E  R  L  *  D  F  R  K  I  P  F  F  L  S  F  F  R  A  I  T  W  V  Q  L  V  S  R  *  Y  K  L  V  S  D  H  L  H  S  I  S  Q  M  V  R  T  R  A  T  T  A  P  T  S  T  S  A  R  Q  E  A  S  K  P  A  T  G  L  * </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  S  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  F  L  S  F  V  L  L  L  G  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  Q  P  R  Q  H  Q  H  R  Q  D  K  K  R  L  S  Q  P  L  G  C   </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  L  *  E  A  I  R  L  *  E  N  S  I  L  S  F  F  L  S  C  Y  Y  L  G  P  I  G  I  *  V  I  Q  I  G  I  *  P  S  S  L  Y  F  A  D  G  *  N  *  S  N  N  R  A  N  I  N  I  G  K  T  R  S  V  *  A  S  H  W  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="77068" stop="76835"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFFLSFVLLLGSNWYLGDTNWYLTIFTLFRRWLELEQQPRQHQHRQDKKRLSQPLGC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="77494" PGL_stop="77276"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77494" e_stop="77276"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="77494" e_stop="77276" e_length="219"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77494" stop="77276"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCATTACATCGGATTTCAGGGTAAGCTAACGCTTCTAGCTTGGACTGGATCTTCTTCTTCATGTCTTGATGCCTTGAACTTCCGGCATGGACTAGCTTTTACTTATTTTAGCTTCTTAGAATACTCTTAGTTTAGTAATTTAATCATAGATGTTCTTGTGATGATGACTTCCAGATTTTGGGGATAATAATAGTTGTTGAGTTTTTAGAAGTTATTGAA</gDNA_template>
            <first_frame> S  L  H  R  I  S  G  *  A  N  A  S  S  L  D  W  I  F  F  F  M  S  *  C  L  E  L  P  A  W  T  S  F  Y  L  F  *  L  L  R  I  L  L  V  *  *  F  N  H  R  C  S  C  D  D  D  F  Q  I  L  G  I  I  I  V  V  E  F  L  E  V  I  E </first_frame>
            <second_frame>  H  Y  I  G  F  Q  G  K  L  T  L  L  A  W  T  G  S  S  S  S  C  L  D  A  L  N  F  R  H  G  L  A  F  T  Y  F  S  F  L  E  Y  S  *  F  S  N  L  I  I  D  V  L  V  M  M  T  S  R  F  W  G  *  *  *  L  L  S  F  *  K  L  L   </second_frame>
            <third_frame>   I  T  S  D  F  R  V  S  *  R  F  *  L  G  L  D  L  L  L  H  V  L  M  P  *  T  S  G  M  D  *  L  L  L  I  L  A  S  *  N  T  L  S  L  V  I  *  S  *  M  F  L  *  *  *  L  P  D  F  G  D  N  N  S  C  *  V  F  R  S  Y  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0304N09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="-" PGL_start="114707" PGL_stop="113733"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114707" e_stop="114562"/>
            <exon e_start="114211" e_stop="113733"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.920" acc_prob="1.000" e_score="0.979"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="114707" e_stop="114562" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.920" acc_prob="1.000">
            <gDNA_intron_boundary i_start="114561" i_stop="114212" i_length="350"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="114211" e_stop="113733" e_length="479"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114707" stop="114562"/>
              <exon start="114211" stop="113733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549437" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114707" stop="114562"/>
              <exon start="114211" stop="113740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E546838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114706" stop="114562"/>
              <exon start="114211" stop="113871"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362905" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATCATGAAATAGGGGGACAACTTGGTGCTCCTGACATTTCTTCATTTCAAGCAGCACCAAATTTCACTCCTGAACAATATAATCATATACTGAAAATGATTGATAAAGACTCGTCTTCTCAGAATGTTGTTGCCAACATGGCAG : GACCTTTGCAATGGCAAGGTGAGGGGGATTGGTAAGGAAGAAGGAGGTATCTACATACTTCCATCTACCAAAAGGCCATCACTTGCCACTGTTGATCCTTCACCACCGGTTGCTACTGTTTTTCAGTCAACTGCTTCATCTACATCTAATCCATCTATGTCCAATCCATCTGATATATCTCTTTGGCATCTCAGACTTGGGCATGCTCCTGCCACTGTACTCAACAAAATTGATTTTTTGAAGCCTCACCTTCAAAATAGTATTTTTCATTCTTGTTCCATATGTCCTCTTGCAAGGCAAACTAGATTTCCTTTTCCTCATAGTGTTACAAAAACTGTATCTCCTTTTGAACTTCTTCACATGGATGTTTGGGGACCTTATAAACAATGTACTTATAATGGTCATAGATTTTTTCTTACCATTGTTGATGACTATTCAAGAATGACTTGGATTTTCTTGTTGAGATTTAAAACTCAATT</gDNA_template>
            <first_frame> *  S  *  N  R  G  T  T  W  C  S  *  H  F  F  I  S  S  S  T  K  F  H  S  *  T  I  *  S  Y  T  E  N  D  *  *  R  L  V  F  S  E  C  C  C  Q  H  G  R :   T  F  A  M  A  R  *  G  G  L  V  R  K  K  E  V  S  T  Y  F  H  L  P  K  G  H  H  L  P  L  L  I  L  H  H  R  L  L  L  F  F  S  Q  L  L  H  L  H  L  I  H  L  C  P  I  H  L  I  Y  L  F  G  I  S  D  L  G  M  L  L  P  L  Y  S  T  K  L  I  F  *  S  L  T  F  K  I  V  F  F  I  L  V  P  Y  V  L  L  Q  G  K  L  D  F  L  F  L  I  V  L  Q  K  L  Y  L  L  L  N  F  F  T  W  M  F  G  D  L  I  N  N  V  L  I  M  V  I  D  F  F  L  P  L  L  M  T  I  Q  E  *  L  G  F  S  C  *  D  L  K  L  N  </first_frame>
            <second_frame>  D  H  E  I  G  G  Q  L  G  A  P  D  I  S  S  F  Q  A  A  P  N  F  T  P  E  Q  Y  N  H  I  L  K  M  I  D  K  D  S  S  S  Q  N  V  V  A  N  M  A   : G  P  L  Q  W  Q  G  E  G  D  W  *  G  R  R  R  Y  L  H  T  S  I  Y  Q  K  A  I  T  C  H  C  *  S  F  T  T  G  C  Y  C  F  S  V  N  C  F  I  Y  I  *  S  I  Y  V  Q  S  I  *  Y  I  S  L  A  S  Q  T  W  A  C  S  C  H  C  T  Q  Q  N  *  F  F  E  A  S  P  S  K  *  Y  F  S  F  L  F  H  M  S  S  C  K  A  N  *  I  S  F  S  S  *  C  Y  K  N  C  I  S  F  *  T  S  S  H  G  C  L  G  T  L  *  T  M  Y  L  *  W  S  *  I  F  S  Y  H  C  *  *  L  F  K  N  D  L  D  F  L  V  E  I  *  N  S  I </second_frame>
            <third_frame>   I  M  K  *  G  D  N  L  V  L  L  T  F  L  H  F  K  Q  H  Q  I  S  L  L  N  N  I  I  I  Y  *  K  *  L  I  K  T  R  L  L  R  M  L  L  P  T  W  Q  :  D  L  C  N  G  K  V  R  G  I  G  K  E  E  G  G  I  Y  I  L  P  S  T  K  R  P  S  L  A  T  V  D  P  S  P  P  V  A  T  V  F  Q  S  T  A  S  S  T  S  N  P  S  M  S  N  P  S  D  I  S  L  W  H  L  R  L  G  H  A  P  A  T  V  L  N  K  I  D  F  L  K  P  H  L  Q  N  S  I  F  H  S  C  S  I  C  P  L  A  R  Q  T  R  F  P  F  P  H  S  V  T  K  T  V  S  P  F  E  L  L  H  M  D  V  W  G  P  Y  K  Q  C  T  Y  N  G  H  R  F  F  L  T  I  V  D  D  Y  S  R  M  T  W  I  F  L  L  R  F  K  T  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="-"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114606" stop="114562"/>
                    <exon start="114211" stop="113735"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>522</number_coding_nucleotides>
                  <number_encoded_amino_acids>174</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIKTRLLRMLLPTWQDLCNGKVRGIGKEEGGIYILPSTKRPSLATVDPSPPVATVFQSTASSTSNPSMSNPSDISLWHLRLGHAPATVLNKIDFLKPHLQNSIFHSCSICPLARQTRFPFPHSVTKTVSPFELLHMDVWGPYKQCTYNGHRFFLTIVDDYSRMTWIFLLRFKTQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="115943" PGL_stop="115217"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="115943" e_stop="115217"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.974">
            <gDNA_exon_boundary e_start="115943" e_stop="115217" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115943" stop="115323"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E360288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115942" stop="115420"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115935" stop="115217"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E549469" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="115897" stop="115741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361593" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTTTTCCTCACTGTTTCTTCCATTCTTTTCTTCATCTCACAATTATTCTTTCAACTGCCATAACAATGGCAAGGTAGCTATCACTCAACATGGTATCAGAGCCACCAATACTCTAGCTGCTAGAGAGAGTTTTTTTTGTTGTTCTGCATCATTCAAATTGGACGAACAGTGGAATACCGACGTCGGAGATAATCGGAAACTATGGTGGATGCAATTAGGTCATCGGAGGTGCAAGACAACTCCAATCGAGAACAGATCGAAAAATTCACTGATATACATCCAAGGAATCCTTTATATCTTCATCCATCTGATACTCCAGGTAGCATTTTAATCCCTCAACAACTTACTGGTATAGAAAATTATACTGGGTGGAGTAATTCTATGAGAGTAGCATTGTTAGCTAAGAATAAAATTGGATTTATTGATGATACTTGTTGTAAACATCACTACAAAGGAGATCTGAATCATGAATGGGAGAGATGTAATGCTTTTGTGCTATCGTGGATCACAAACTCTGTTTCGAAGGAATTAGCAAATGGCTTAATGTTTTCATCAAATGCCCATAATGTTTGGAAGGATCTGAAAGAGAGGTTTGACAAACGTAATCTCACTAGAATATACCAGGTTCATCGCGAAATCAGTACAATGAGTCAAGGAACTTTTACAGTTTCTGAGTATTATTCCAAATTGAGAAATCTTTGGGATGAGTATGGATCATTGGTTCCT</gDNA_template>
            <first_frame> F  F  P  H  C  F  F  H  S  F  L  H  L  T  I  I  L  S  T  A  I  T  M  A  R  *  L  S  L  N  M  V  S  E  P  P  I  L  *  L  L  E  R  V  F  F  V  V  L  H  H  S  N  W  T  N  S  G  I  P  T  S  E  I  I  G  N  Y  G  G  C  N  *  V  I  G  G  A  R  Q  L  Q  S  R  T  D  R  K  I  H  *  Y  T  S  K  E  S  F  I  S  S  S  I  *  Y  S  R  *  H  F  N  P  S  T  T  Y  W  Y  R  K  L  Y  W  V  E  *  F  Y  E  S  S  I  V  S  *  E  *  N  W  I  Y  *  *  Y  L  L  *  T  S  L  Q  R  R  S  E  S  *  M  G  E  M  *  C  F  C  A  I  V  D  H  K  L  C  F  E  G  I  S  K  W  L  N  V  F  I  K  C  P  *  C  L  E  G  S  E  R  E  V  *  Q  T  *  S  H  *  N  I  P  G  S  S  R  N  Q  Y  N  E  S  R  N  F  Y  S  F  *  V  L  F  Q  I  E  K  S  L  G  *  V  W  I  I  G  S  </first_frame>
            <second_frame>  F  F  L  T  V  S  S  I  L  F  F  I  S  Q  L  F  F  Q  L  P  *  Q  W  Q  G  S  Y  H  S  T  W  Y  Q  S  H  Q  Y  S  S  C  *  R  E  F  F  L  L  F  C  I  I  Q  I  G  R  T  V  E  Y  R  R  R  R  *  S  E  T  M  V  D  A  I  R  S  S  E  V  Q  D  N  S  N  R  E  Q  I  E  K  F  T  D  I  H  P  R  N  P  L  Y  L  H  P  S  D  T  P  G  S  I  L  I  P  Q  Q  L  T  G  I  E  N  Y  T  G  W  S  N  S  M  R  V  A  L  L  A  K  N  K  I  G  F  I  D  D  T  C  C  K  H  H  Y  K  G  D  L  N  H  E  W  E  R  C  N  A  F  V  L  S  W  I  T  N  S  V  S  K  E  L  A  N  G  L  M  F  S  S  N  A  H  N  V  W  K  D  L  K  E  R  F  D  K  R  N  L  T  R  I  Y  Q  V  H  R  E  I  S  T  M  S  Q  G  T  F  T  V  S  E  Y  Y  S  K  L  R  N  L  W  D  E  Y  G  S  L  V  P </second_frame>
            <third_frame>   F  S  S  L  F  L  P  F  F  S  S  S  H  N  Y  S  F  N  C  H  N  N  G  K  V  A  I  T  Q  H  G  I  R  A  T  N  T  L  A  A  R  E  S  F  F  C  C  S  A  S  F  K  L  D  E  Q  W  N  T  D  V  G  D  N  R  K  L  W  W  M  Q  L  G  H  R  R  C  K  T  T  P  I  E  N  R  S  K  N  S  L  I  Y  I  Q  G  I  L  Y  I  F  I  H  L  I  L  Q  V  A  F  *  S  L  N  N  L  L  V  *  K  I  I  L  G  G  V  I  L  *  E  *  H  C  *  L  R  I  K  L  D  L  L  M  I  L  V  V  N  I  T  T  K  E  I  *  I  M  N  G  R  D  V  M  L  L  C  Y  R  G  S  Q  T  L  F  R  R  N  *  Q  M  A  *  C  F  H  Q  M  P  I  M  F  G  R  I  *  K  R  G  L  T  N  V  I  S  L  E  Y  T  R  F  I  A  K  S  V  Q  *  V  K  E  L  L  Q  F  L  S  I  I  P  N  *  E  I  F  G  M  S  M  D  H  W  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0304N09.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="115750" stop="115217"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>534</number_coding_nucleotides>
                  <number_encoded_amino_acids>178</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SETMVDAIRSSEVQDNSNREQIEKFTDIHPRNPLYLHPSDTPGSILIPQQLTGIENYTGWSNSMRVALLAKNKIGFIDDTCCKHHYKGDLNHEWERCNAFVLSWITNSVSKELANGLMFSSNAHNVWKDLKERFDKRNLTRIYQVHREISTMSQGTFTVSEYYSKLRNLWDEYGSLVP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 136 chains have been computed
$ 
$ memory statistics:
$ 221560 bytes spliced alignments in total
$ 39 spliced alignments have been stored
$ 5681 bytes was the average size of a spliced alignment
$ 23328 bytes predicted gene locations in total
$ 16 predicted gene locations have been stored
$ 1458 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 148 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:49:33
-->
