<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:50:01"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243280" ref_strand="+" ref_description="SGN-E243280 [cLEF-12-L15]">
      <seq>aaaatgctatttttcttcttcttcttgagctaagcatatattaaaaggggatgaatgatttaaaatacatgtagttcattattaacttacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagccatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7723" stop="9838"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8023" g_stop="8273" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9538" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="433" r_length="182" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E243280" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243280" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8023" e_stop="8273"/>
          <exon e_start="9357" e_stop="9538"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGCTATTTTTCTTCTTCTTCTTGAGCTAAGCATATATTAAAAGGGGATGAATGATTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCA</genome_strand>
        <mrna_strand>AAAATGCTATTTTTCTTCTTCTTCTTGAGCTAAGCATATATTAAAAGGGGATGAATGATTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCCATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E200653" ref_strand="+" ref_description="SGN-E200653 [cLEC-9-M6]">
      <seq>aatgatttaaaatacatgtagttcattattaacttacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7776" stop="9807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8076" g_stop="8273" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9507" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="349" r_length="151" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E200653" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8076" e_stop="8273"/>
          <exon e_start="9357" e_stop="9507"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGATTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTG</genome_strand>
        <mrna_strand>AATGATTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275822" ref_strand="+" ref_description="SGN-E275822 [cLEN-18-J21]">
      <seq>tttaaaatacatgtagttcattattaacttacaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7781" stop="9815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8081" g_stop="8273" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="192" r_length="192" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9515" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="351" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E275822" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8081" e_stop="8273"/>
          <exon e_start="9357" e_stop="9515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTA</genome_strand>
        <mrna_strand>TTTAAAATACATGTAGTTCATTATTAACTTAC-AAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E719819" ref_strand="+" ref_description="SGN-E719819 [FC08DH06]">
      <seq>gacatgtagttcattactaacttacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaaaaattattcaatttcattgcttcaaaaacaccttctcatgatcttgtttggaatgttggtactggtaggggccaggctgctcaatctttacctaacctttacaaaaatgtgatagctacaaacacaagtccaaagcaccttgaatttgcaccaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccaaaatcaaaacaaaaataggatcaaaatcaagtgtaaatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttataaacatgttaaatggttactcaaaaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtaaatgcaatatttgataaattttacacaagtgatgctggaccttattggaaatcaccaaaaaaattggtcaataaaaagtatgaaactattgattttccatttgaggctataaatggatgtgatcataatgaaccatttgagttcaaaattgaaaaagttatggacttgaattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaaaaaaagggtgttaagttgttaagtgaaaatgttgttaaaaaatttacaagtgcttgaaatgaaaatggaaaaagtgaaaaaaaagtgatttatcctatttacttgaggattgaaaaagttgaaaatttgaattgaaagtgtaaagcaaatacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7789" stop="10320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8088" g_stop="8273" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="10020" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="850" r_length="664" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E719819" ref_strand="+">
        <total_alignment_score>0.953</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8088" e_stop="8273"/>
          <exon e_start="9357" e_stop="10020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAA</genome_strand>
        <mrna_strand>GACATGTAGTTCATTACTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAAAATTATTCAATTTCATTGCTTCAAAAACACCTTCTCATGATCTTGTTTGGAATGTTGGTACTGGTAGGGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTAACCTTTACAAAAATGTGATAGCTACAAACACAAGTCCAAAGCACCTTGAATTTGCACCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCAAAATCAAAACAAAAATAGGATCAAAATCAAGTGTAAATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATAAACATGTTAAATGGTTACTCAAAAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAAATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGAAATCACCAAAAAAATTGGTCAATAAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAAATGGATGTGATCATAATGAACCATTTGAGTTCAAAATTGAAAAAGTTATGGACTTGAATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAAAAAAGGGTGTTAAGTTGTTAAGTGAAAATGTTGTTAAAAAATTTACAAGTGCTTGAAATGAAAATGGAAAAAGTGAAAAAAAAGTGATTTATCCTATTTACTTGAGGATTGAAAAAGTTGAAAATTTGAATTGAAAGTGTAAAGCAAATACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E207814" ref_strand="+" ref_description="SGN-E207814 [cLEC-32-B2]">
      <seq>aacttacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaaattatggacttggattcttgttttacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7806" stop="10133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8106" g_stop="8273" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9833" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="645" r_length="477" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E207814" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8106" e_stop="8273"/>
          <exon e_start="9357" e_stop="9833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATAC</genome_strand>
        <mrna_strand>AACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAATTATGGACTTGGATTCTTGTTTTACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353595" ref_strand="+" ref_description="SGN-E353595 [cTOS-15-J10]">
      <seq>ttacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7809" stop="9968"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8109" g_stop="8273" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9668" g_length="312"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="477" r_length="312" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E353595" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8109" e_stop="8273"/>
          <exon e_start="9357" e_stop="9668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTT</genome_strand>
        <mrna_strand>TTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E205479" ref_strand="+" ref_description="SGN-E205479 [cLEC-28-O15]">
      <seq>tacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaaggccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatggtaaatggatactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaacaaaattggtcgatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7810" stop="10023"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8110" g_stop="8273" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9723" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="531" r_length="367" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E205479" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205479" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8110" e_stop="8273"/>
          <exon e_start="9357" e_stop="9723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAA</genome_strand>
        <mrna_strand>TACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGGCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGGTAAATGGATACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAACAAAATTGGTCGATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240304" ref_strand="+" ref_description="SGN-E240304 [cLED-25-C17]">
      <seq>tacaaaaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7810" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8110" g_stop="8273" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="164" r_length="164" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9683" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="491" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E240304" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8110" e_stop="8273"/>
          <exon e_start="9357" e_stop="9683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</genome_strand>
        <mrna_strand>TACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E706004" ref_strand="+" ref_description="SGN-E706004 [FA28DA01]">
      <seq>aaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7815" stop="10155"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8115" g_stop="8273" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9855" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="658" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E706004" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E706004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8115" e_stop="8273"/>
          <exon e_start="9357" e_stop="9855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATC</genome_strand>
        <mrna_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237830" ref_strand="+" ref_description="SGN-E237830 [cLED-18-D19]">
      <seq>aaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7815" stop="10141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8115" g_stop="8273" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9841" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="644" r_length="485" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E237830" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8115" e_stop="8273"/>
          <exon e_start="9357" e_stop="9841"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTC</genome_strand>
        <mrna_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237996" ref_strand="+" ref_description="SGN-E237996 [cLED-18-L23]">
      <seq>aaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7815" stop="10078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8115" g_stop="8273" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9778" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="581" r_length="422" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E237996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8115" e_stop="8273"/>
          <exon e_start="9357" e_stop="9778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGG</genome_strand>
        <mrna_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241597" ref_strand="+" ref_description="SGN-E241597 [cLED-36-I21]">
      <seq>aaaaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7815" stop="10039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8115" g_stop="8273" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9739" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="542" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E241597" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8115" e_stop="8273"/>
          <exon e_start="9357" e_stop="9739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGA</genome_strand>
        <mrna_strand>AAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403205" ref_strand="+" ref_description="SGN-E403205 [PPC-9-P4]">
      <seq>aaaaagaatggcgaatttgttcattaagcaagcacaacaatactcaaagggtaggccaagttaccctcaagaattgttcaatttcattgcttctaaaacaccttctcgtgatcttgtctgggatgttggtactggtagtggccaggctgctcaatctttggctaagctttacaagaatgtgatagctacagacacaagtgcaaagcagcttgaatttgcagcaaaggttccgaatgttcgatacatatgtacctctcctaagatgtcaaaatccgaaatcgaaagcaaaataggagcagagtcaagtgtagatttggtaacaattgctcaagcaatgcattggtttgatcttccaactttttatgaacatgttaaacggttactcaagaaaccaaatggagtaatagcagcatggtgttacactacacctgaaataaacagctcagtagatgcaatatttgataaattttacactagtgatactggaccttactgggaatcaccaagaaaattggttgatgaaaagtataaaactattgattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7818" stop="10042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8117" g_stop="8273" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9742" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="543" r_length="386" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E403205" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8117" e_stop="8273"/>
          <exon e_start="9357" e_stop="9742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTT</genome_strand>
        <mrna_strand>AAAAAGAATGGCGAATTTGTTCATTAAGCAAGCACAACAATACTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTGTTCAATTTCATTGCTTCTAAAACACCTTCTCGTGATCTTGTCTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTGCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCGAATGTTCGATACATATGTACCTCTCCTAAGATGTCAAAATCCGAAATCGAAAGCAAAATAGGAGCAGAGTCAAGTGTAGATTTGGTAACAATTGCTCAAGCAATGCATTGGTTTGATCTTCCAACTTTTTATGAACATGTTAAACGGTTACTCAAGAAACCAAATGGAGTAATAGCAGCATGGTGTTACACTACACCTGAAATAAACAGCTCAGTAGATGCAATATTTGATAAATTTTACACTAGTGATACTGGACCTTACTGGGAATCACCAAGAAAATTGGTTGATGAAAAGTATAAAACTATTGATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E285613" ref_strand="+" ref_description="SGN-E285613 [cLES-5-G6]">
      <seq>aaaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7817" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8117" g_stop="8273" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="157" r_length="157" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9683" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="484" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E285613" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E285613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8117" e_stop="8273"/>
          <exon e_start="9357" e_stop="9683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</genome_strand>
        <mrna_strand>AAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311624" ref_strand="+" ref_description="SGN-E311624 [cLEZ-9-C12]">
      <seq>aaaaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7818" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8118" g_stop="8273" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9683" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="483" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E311624" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311624" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8118" e_stop="8273"/>
          <exon e_start="9357" e_stop="9683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</genome_strand>
        <mrna_strand>AAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E487247" ref_strand="+" ref_description="SGN-E487247 [cSTE-24-P6]">
      <seq>aagaatggcgaatttgttcattaagcaagcacaacaatactcaaagggtaggccaagttaccctcaagaattgttcaatttcattgcttctaaaacaccttctcgtgatcttgtctgggatgttggtactggtagtggccaggctgctcaatctttggctaagctttacaagaatgtgatagctacagacacaagtgcaaagcagcttgaatttgcagcaaaggttccgaatgttcgatacatatgtacctctcctaagatgtcaaaatccgaaatcgaaagcaaaataggagcagagtcaagtgtagatttggtaacaattgctcaagcaatgcattggtttgatcttccaactttttatgaacatgttaaacggttactcaagaaaccaaatggagtaatagcagcatggtgttacactacacctgaaataaacagctcagtagatgcaatatttgataaattttacactagtgatactggaccttactgggaatcaccaagaaaattggttgatgaaaagtataaaactattgattttccatttgaggctgtagatggttgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttattttacatacttgaagtcatggtcagcttatcaaactgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7821" stop="10165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8120" g_stop="8273" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9865" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="663" r_length="509" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E487247" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8120" e_stop="8273"/>
          <exon e_start="9357" e_stop="9865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</genome_strand>
        <mrna_strand>AAGAATGGCGAATTTGTTCATTAAGCAAGCACAACAATACTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTGTTCAATTTCATTGCTTCTAAAACACCTTCTCGTGATCTTGTCTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTGCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCGAATGTTCGATACATATGTACCTCTCCTAAGATGTCAAAATCCGAAATCGAAAGCAAAATAGGAGCAGAGTCAAGTGTAGATTTGGTAACAATTGCTCAAGCAATGCATTGGTTTGATCTTCCAACTTTTTATGAACATGTTAAACGGTTACTCAAGAAACCAAATGGAGTAATAGCAGCATGGTGTTACACTACACCTGAAATAAACAGCTCAGTAGATGCAATATTTGATAAATTTTACACTAGTGATACTGGACCTTACTGGGAATCACCAAGAAAATTGGTTGATGAAAAGTATAAAACTATTGATTTTCCATTTGAGGCTGTAGATGGTTGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTATTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238485" ref_strand="+" ref_description="SGN-E238485 [cLED-17-I7]">
      <seq>aaaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacacaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7820" stop="10001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8120" g_stop="8273" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9701" g_length="345"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="499" r_length="345" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E238485" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8120" e_stop="8273"/>
          <exon e_start="9357" e_stop="9701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCA</genome_strand>
        <mrna_strand>AAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACACAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E288797" ref_strand="+" ref_description="SGN-E288797 [cLES-17-G12]">
      <seq>aaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7821" stop="10133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8121" g_stop="8273" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9833" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="630" r_length="477" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E288797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8121" e_stop="8273"/>
          <exon e_start="9357" e_stop="9833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATAC</genome_strand>
        <mrna_strand>AAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243632" ref_strand="+" ref_description="SGN-E243632 [cLED-34-H5]">
      <seq>aaaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7821" stop="10051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8121" g_stop="8273" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9751" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="548" r_length="395" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E243632" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243632" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8121" e_stop="8273"/>
          <exon e_start="9357" e_stop="9751"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGA</genome_strand>
        <mrna_strand>AAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241843" ref_strand="+" ref_description="SGN-E241843 [cLED-27-A12]">
      <seq>aaaatggcaaatttgttcattaagcaagcacaacagtattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagcagatgcaaatattgataaattttacacaagtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7821" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8121" g_stop="8273" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="153" r_length="153" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9683" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="480" r_length="327" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E241843" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8121" e_stop="8273"/>
          <exon e_start="9357" e_stop="9683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</genome_strand>
        <mrna_strand>AAAATGGCAAATTTGTTCATTAAGCAAGCACAACAGTATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGCAGATGCAAATATTGATAAATTTTACACAAGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286548" ref_strand="+" ref_description="SGN-E286548 [cLES-12-P3]">
      <seq>aaatggcaaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaanataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7822" stop="10039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8122" g_stop="8273" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9739" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="535" r_length="383" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E286548" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8122" e_stop="8273"/>
          <exon e_start="9357" e_stop="9739"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGA</genome_strand>
        <mrna_strand>AAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAANATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240812" ref_strand="+" ref_description="SGN-E240812 [cLED-24-H5]">
      <seq>atggcaaatttgttcattaagcatgcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttatctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgccaaaatacgaaatcgaaacaaaaatacgatcacaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7824" stop="9870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8124" g_stop="8273" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9570" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="364" r_length="214" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E240812" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8124" e_stop="8273"/>
          <exon e_start="9357" e_stop="9570"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATG</genome_strand>
        <mrna_strand>ATGGCAAATTTGTTCATTAAGCATGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGCCAAAATACGAAATCGAAACAAAAATACGATCACAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E403881" ref_strand="+" ref_description="SGN-E403881 [PPC-12-C19]">
      <seq>ggcaaatttgttcattaagcaagcacaacaatactcaaagggtaggccaagttaccctcaagaattgttcaatttcattgcttctaaaacaccttctcatgatcttgtctgggatgttggtactggtagtggccaggctgctcaatctttggctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccgaatgttcgatacatatgtacctctcctaagatgtcaaaatccgaaatcgaaaccaaaataggagcagagtcgagtgtagatttggtaacaattgctcaagcaatgcattggtttgatcttccaactttttatgaacatgttaaatggttactcaagaaaccaaatggagtaattgcagcatggtgttacactacacctgaaataaacagctcagtagatgcaatatttgataaattttacactagtgatactggaccttattgggaatcaccaagaaaattggttgatgaaaagtataaaactattgattttccatttgaggctgtagatggttgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttattttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaanggtgttgagtttgtaagtgaagatgttgttgaaaagttcacaagtgcttggaatgaaagatgaaagagtgagaaaaagtgactcatccaatttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7826" stop="10270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8126" g_stop="8273" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9970" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="761" r_length="613" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E403881" ref_strand="+">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E403881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8126" e_stop="8273"/>
          <exon e_start="9357" e_stop="9970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTT</genome_strand>
        <mrna_strand>GGCAAATTTGTTCATTAAGCAAGCACAACAATACTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTGTTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTCTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCGAATGTTCGATACATATGTACCTCTCCTAAGATGTCAAAATCCGAAATCGAAACCAAAATAGGAGCAGAGTCGAGTGTAGATTTGGTAACAATTGCTCAAGCAATGCATTGGTTTGATCTTCCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGAGTAATTGCAGCATGGTGTTACACTACACCTGAAATAAACAGCTCAGTAGATGCAATATTTGATAAATTTTACACTAGTGATACTGGACCTTATTGGGAATCACCAAGAAAATTGGTTGATGAAAAGTATAAAACTATTGATTTTCCATTTGAGGCTGTAGATGGTTGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTATTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAANGGTGTTGAGTTTGTAAGTGAAGATGTTGTTGAAAAGTTCACAAGTGCTTGGAATGAAAGATGAAAGAGTGAG-AAAAAGTGACTCATCCAATTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212642" ref_strand="+" ref_description="SGN-E212642 [cLEC-73-G3]">
      <seq>caaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttgggattgaagtgtaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7828" stop="10312"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8128" g_stop="8273" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="10012" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="802" r_length="656" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E212642" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>802</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8128" e_stop="8273"/>
          <exon e_start="9357" e_stop="10012"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGC</genome_strand>
        <mrna_strand>CAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGGATTGAAGTGTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276935" ref_strand="+" ref_description="SGN-E276935 [cLEN-22-I6]">
      <seq>aaatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7829" stop="10163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8129" g_stop="8273" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9863" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="652" r_length="507" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E276935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8129" e_stop="8273"/>
          <exon e_start="9357" e_stop="9863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCA</genome_strand>
        <mrna_strand>AAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202243" ref_strand="+" ref_description="SGN-E202243 [cLEC-6-C23]">
      <seq>aatttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7830" stop="10091"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8130" g_stop="8273" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9791" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="579" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E202243" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202243" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8130" e_stop="8273"/>
          <exon e_start="9357" e_stop="9791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTC</genome_strand>
        <mrna_strand>AATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397871" ref_strand="+" ref_description="SGN-E397871 [TUS-35-O24]">
      <seq>atttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7831" stop="10190"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8131" g_stop="8273" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9890" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="677" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E397871" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8131" e_stop="8273"/>
          <exon e_start="9357" e_stop="9890"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGT</genome_strand>
        <mrna_strand>ATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392329" ref_strand="+" ref_description="SGN-E392329 [TUS-35-M24]">
      <seq>atttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaaaaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagaggccaagctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcaacaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtatatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgaaaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7831" stop="10165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8131" g_stop="8273" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9865" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="652" r_length="509" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E392329" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392329" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8131" e_stop="8273"/>
          <exon e_start="9357" e_stop="9865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</genome_strand>
        <mrna_strand>ATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAAAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGAGGCCAAGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAACAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTATATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAAAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392328" ref_strand="+" ref_description="SGN-E392328 [TUS-35-M22]">
      <seq>atttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7831" stop="10165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8131" g_stop="8273" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9865" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="652" r_length="509" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E392328" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8131" e_stop="8273"/>
          <exon e_start="9357" e_stop="9865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</genome_strand>
        <mrna_strand>ATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E342082" ref_strand="+" ref_description="SGN-E342082 [cTOF-10-J18]">
      <seq>tttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaatttacaagtgcttggaatgaagatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7832" stop="10236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8132" g_stop="8273" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9936" g_length="580"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="721" r_length="579" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E342082" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342082" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8132" e_stop="8273"/>
          <exon e_start="9357" e_stop="9936"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGA</genome_strand>
        <mrna_strand>TTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTG-AAAATTTACAAGTGCTTGGAATGAAGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241262" ref_strand="+" ref_description="SGN-E241262 [cLED-26-B15]">
      <seq>tttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7832" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8132" g_stop="8273" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9683" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="469" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E241262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8132" e_stop="8273"/>
          <exon e_start="9357" e_stop="9683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</genome_strand>
        <mrna_strand>TTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287326" ref_strand="+" ref_description="SGN-E287326 [cLES-15-H13]">
      <seq>ttgttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7833" stop="10088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8133" g_stop="8273" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9788" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="573" r_length="432" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E287326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8133" e_stop="8273"/>
          <exon e_start="9357" e_stop="9788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAG</genome_strand>
        <mrna_strand>TTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206106" ref_strand="+" ref_description="SGN-E206106 [cLEC-29-K19]">
      <seq>gttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7835" stop="10136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8135" g_stop="8273" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9836" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="619" r_length="480" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E206106" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206106" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8135" e_stop="8273"/>
          <exon e_start="9357" e_stop="9836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTG</genome_strand>
        <mrna_strand>GTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E246607" ref_strand="+" ref_description="SGN-E246607 [cLEF-45-H6]">
      <seq>gttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7835" stop="9972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8135" g_stop="8273" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9672" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="455" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E246607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8135" e_stop="8273"/>
          <exon e_start="9357" e_stop="9672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACA</genome_strand>
        <mrna_strand>GTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378639" ref_strand="+" ref_description="SGN-E378639 [TUS-46-A6]">
      <seq>gttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcnaaggttccaatgttcatacatatgtacctctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7835" stop="9758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8135" g_stop="8273" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="139" r_length="139" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9458" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="239" r_length="100" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E378639" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>241</cumulative_length_of_scored_exons>
        <coverage percentage="1.008" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8135" e_stop="8273"/>
          <exon e_start="9357" e_stop="9458"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCT</genome_strand>
        <mrna_strand>GTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCNAAGGTTCC-AATGTTC-ATACATATGTACCTCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340435" ref_strand="+" ref_description="SGN-E340435 [cTOF-1-M13]">
      <seq>ttcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7836" stop="10069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8136" g_stop="8273" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="138" r_length="138" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9769" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="551" r_length="413" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E340435" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340435" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8136" e_stop="8273"/>
          <exon e_start="9357" e_stop="9769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGA</genome_strand>
        <mrna_strand>TTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212308" ref_strand="+" ref_description="SGN-E212308 [cLEC-74-A11]">
      <seq>tcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagataatggtgttgagttgttaagtgaagaatgtgttgaaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7837" stop="10210"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="8273" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9909" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="690" r_length="553" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E212308" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212308" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="8273"/>
          <exon e_start="9357" e_stop="9909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAAT</genome_strand>
        <mrna_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGATAATGGTGTTGAGTTGTTAAGTGAAGAATGTGTTGAAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243701" ref_strand="+" ref_description="SGN-E243701 [cLED-35-G15]">
      <seq>tcattaatcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7837" stop="10076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="8273" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9776" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="557" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E243701" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243701" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="8273"/>
          <exon e_start="9357" e_stop="9776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAAT</genome_strand>
        <mrna_strand>TCATTAATCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240647" ref_strand="+" ref_description="SGN-E240647 [cLED-21-N18]">
      <seq>tcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7837" stop="10052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="8273" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9752" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="533" r_length="396" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E240647" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="8273"/>
          <exon e_start="9357" e_stop="9752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAG</genome_strand>
        <mrna_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238447" ref_strand="+" ref_description="SGN-E238447 [cLED-17-L16]">
      <seq>tcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7837" stop="10034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="8273" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9734" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="515" r_length="378" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E238447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="8273"/>
          <exon e_start="9357" e_stop="9734"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACT</genome_strand>
        <mrna_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242436" ref_strand="+" ref_description="SGN-E242436 [cLED-30-P11]">
      <seq>tcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7837" stop="10033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="8273" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9733" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="514" r_length="377" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E242436" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="8273"/>
          <exon e_start="9357" e_stop="9733"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAAC</genome_strand>
        <mrna_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237651" ref_strand="+" ref_description="SGN-E237651 [cLED-19-C10]">
      <seq>tcattaagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7837" stop="9983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8137" g_stop="8273" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="137" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9683" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="464" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E237651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8137" e_stop="8273"/>
          <exon e_start="9357" e_stop="9683"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</genome_strand>
        <mrna_strand>TCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335452" ref_strand="+" ref_description="SGN-E335452 [cTOE-2-N24]">
      <seq>attaagcaagcacaacaatattcaaagggtacgccaagttaccctcaataattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccacgctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7839" stop="9896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8139" g_stop="8273" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="135" r_length="135" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9596" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="136" r_stop="375" r_length="240" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E335452" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335452" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8139" e_stop="8273"/>
          <exon e_start="9357" e_stop="9596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAAT</genome_strand>
        <mrna_strand>ATTAAGCAAGCACAACAATATTCAAAGGGTACGCCAAGTTACCCTCAATAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCACGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E281714" ref_strand="+" ref_description="SGN-E281714 [cLER-14-P14]">
      <seq>taagcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7841" stop="10035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8141" g_stop="8273" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9735" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="512" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E281714" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281714" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8141" e_stop="8273"/>
          <exon e_start="9357" e_stop="9735"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTA</genome_strand>
        <mrna_strand>TAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240470" ref_strand="+" ref_description="SGN-E240470 [cLED-21-G14]">
      <seq>aggcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatctaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7844" stop="9858"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8142" g_stop="8273" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9558" g_length="202"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="334" r_length="202" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E240470" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>334</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240470" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8142" e_stop="8273"/>
          <exon e_start="9357" e_stop="9558"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTT</genome_strand>
        <mrna_strand>AGGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCTAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E264011" ref_strand="+" ref_description="SGN-E264011 [cLEG-64-D22]">
      <seq>gcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggatttttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7844" stop="10269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8144" g_stop="8273" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9969" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="743" r_length="613" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E264011" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E264011" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8144" e_stop="8273"/>
          <exon e_start="9357" e_stop="9969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACT</genome_strand>
        <mrna_strand>GCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTTTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231584" ref_strand="+" ref_description="SGN-E231584 [cLED-4-J18]">
      <seq>gcaagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7844" stop="10073"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8144" g_stop="8273" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9773" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="547" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E231584" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8144" e_stop="8273"/>
          <exon e_start="9357" e_stop="9773"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCAT</genome_strand>
        <mrna_strand>GCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E242777" ref_strand="+" ref_description="SGN-E242777 [cLED-31-B1]">
      <seq>aagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7846" stop="9972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8146" g_stop="8273" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9672" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="444" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E242777" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E242777" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8146" e_stop="8273"/>
          <exon e_start="9357" e_stop="9672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACA</genome_strand>
        <mrna_strand>AAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E239485" ref_strand="+" ref_description="SGN-E239485 [cLED-23-B4]">
      <seq>aagcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7846" stop="9959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8146" g_stop="8273" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9659" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="431" r_length="303" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E239485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8146" e_stop="8273"/>
          <exon e_start="9357" e_stop="9659"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTT</genome_strand>
        <mrna_strand>AAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E211197" ref_strand="+" ref_description="SGN-E211197 [cLEC-70-D23]">
      <seq>gcacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7848" stop="10270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8148" g_stop="8273" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9970" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="740" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E211197" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8148" e_stop="8273"/>
          <exon e_start="9357" e_stop="9970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTT</genome_strand>
        <mrna_strand>GCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308643" ref_strand="+" ref_description="SGN-E308643 [cLEZ-13-C17]">
      <seq>cacaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaggtggtcactaaccaaaccaggtggtgttatagggtggtggtgttacactacacctaaaataaacaactcagtagatgcaatatttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7849" stop="9962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8149" g_stop="8273" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9662" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="431" r_length="306" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E308643" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E308643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8149" e_stop="8273"/>
          <exon e_start="9357" e_stop="9662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGAT</genome_strand>
        <mrna_strand>CACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAGGTGGTCACTAACCAAACCAGGTGGTGTTATAGGGTGGTGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E275991" ref_strand="+" ref_description="SGN-E275991 [cLEN-12-J22]">
      <seq>acaacaatattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7850" stop="10144"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8150" g_stop="8273" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9844" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="612" r_length="488" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E275991" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8150" e_stop="8273"/>
          <exon e_start="9357" e_stop="9844"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATG</genome_strand>
        <mrna_strand>ACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244876" ref_strand="+" ref_description="SGN-E244876 [cLEF-2-L7]">
      <seq>atattcaaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgaaaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7856" stop="10165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8156" g_stop="8273" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9865" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="627" r_length="509" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E244876" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>627</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8156" e_stop="8273"/>
          <exon e_start="9357" e_stop="9865"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</genome_strand>
        <mrna_strand>ATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAAAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241204" ref_strand="+" ref_description="SGN-E241204 [cLED-26-I21]">
      <seq>aaagggtaggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7862" stop="10000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8162" g_stop="8273" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9700" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="456" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E241204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8162" e_stop="8273"/>
          <exon e_start="9357" e_stop="9700"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATC</genome_strand>
        <mrna_strand>AAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E240040" ref_strand="+" ref_description="SGN-E240040 [cLED-32-I14]">
      <seq>taggccaagttaccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7868" stop="9942"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8168" g_stop="8273" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9642" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="392" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E240040" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240040" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8168" e_stop="8273"/>
          <exon e_start="9357" e_stop="9642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACT</genome_strand>
        <mrna_strand>TAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241388" ref_strand="+" ref_description="SGN-E241388 [cLED-28-L7]">
      <seq>taccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7878" stop="10164"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8178" g_stop="8273" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9864" g_length="508"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="604" r_length="508" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E241388" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241388" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8178" e_stop="8273"/>
          <exon e_start="9357" e_stop="9864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAA</genome_strand>
        <mrna_strand>TACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204198" ref_strand="+" ref_description="SGN-E204198 [cLEC-13-I6]">
      <seq>taccctcaagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaactgcacaagcaatgcattggtttgatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7878" stop="9851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8178" g_stop="8273" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9551" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="291" r_length="195" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E204198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8178" e_stop="8273"/>
          <exon e_start="9357" e_stop="9551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTA</genome_strand>
        <mrna_strand>TACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAACTGCACAAGCAATGCATTGGTTTGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E335763" ref_strand="+" ref_description="SGN-E335763 [cTOE-19-M9]">
      <seq>aagaattattcaatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7885" stop="9782"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8185" g_stop="8273" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9482" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="215" r_length="126" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E335763" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E335763" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8185" e_stop="8273"/>
          <exon e_start="9357" e_stop="9482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAA</genome_strand>
        <mrna_strand>AAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238273" ref_strand="+" ref_description="SGN-E238273 [cLED-22-J8]">
      <seq>aatttcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7896" stop="10076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8196" g_stop="8273" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9776" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="498" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E238273" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238273" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8196" e_stop="8273"/>
          <exon e_start="9357" e_stop="9776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAAT</genome_strand>
        <mrna_strand>AATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236415" ref_strand="+" ref_description="SGN-E236415 [cLED-13-O24]">
      <seq>tcattgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttggtttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7900" stop="10181"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8200" g_stop="8273" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9881" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="599" r_length="525" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E236415" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236415" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8200" e_stop="8273"/>
          <exon e_start="9357" e_stop="9881"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAG</genome_strand>
        <mrna_strand>TCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGGTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231857" ref_strand="+" ref_description="SGN-E231857 [cLED-7-I18]">
      <seq>ttgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7903" stop="10149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8203" g_stop="8273" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9849" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="564" r_length="493" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E231857" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231857" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8203" e_stop="8273"/>
          <exon e_start="9357" e_stop="9849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAG</genome_strand>
        <mrna_strand>TTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231814" ref_strand="+" ref_description="SGN-E231814 [cLED-7-K3]">
      <seq>ttgcttctaaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttatatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7903" stop="10100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8203" g_stop="8273" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9800" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="515" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E231814" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8203" e_stop="8273"/>
          <exon e_start="9357" e_stop="9800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAG</genome_strand>
        <mrna_strand>TTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTATATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291540" ref_strand="+" ref_description="SGN-E291540 [cLET-6-C2]">
      <seq>taaaacaccttctcatgatcttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7910" stop="10036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8210" g_stop="8273" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9736" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="444" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E291540" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8210" e_stop="8273"/>
          <exon e_start="9357" e_stop="9736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTAT</genome_strand>
        <mrna_strand>TAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378668" ref_strand="+" ref_description="SGN-E378668 [TUS-19-A18]">
      <seq>ttgtttaggatgttggtactggtagtggccaggtcgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataatataaagtatctaagtactaattataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7930" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8230" g_stop="8273" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="0.932"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.93"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="10133" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="820" r_length="776" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E378668" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8230" e_stop="8273"/>
          <exon e_start="9357" e_stop="10133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCTAT</genome_strand>
        <mrna_strand>TTGTTTAGGATGTTGGTACTGGTAGTGGCCAGGTCGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAAT-ATAAAGTATCTAAGTACTAATTATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376685" ref_strand="+" ref_description="SGN-E376685 [TUS-19-A18]">
      <seq>ttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattgaaaaagttggaaatttggattgaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7930" stop="10304"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8230" g_stop="8273" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="10004" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="692" r_length="648" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E376685" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376685" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8230" e_stop="8273"/>
          <exon e_start="9357" e_stop="10004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAG</genome_strand>
        <mrna_strand>TTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGAAAAAGTTGGAAATTTGGATTGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231496" ref_strand="+" ref_description="SGN-E231496 [cLED-4-M6]">
      <seq>ttgtttgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7930" stop="10044"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8230" g_stop="8273" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9744" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="432" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E231496" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231496" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8230" e_stop="8273"/>
          <exon e_start="9357" e_stop="9744"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTC</genome_strand>
        <mrna_strand>TTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260238" ref_strand="+" ref_description="SGN-E260238 [cLEG-53-I18]">
      <seq>tcgggatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcaggagatgcaatatttgataaattttacccaagtgatgctggaccttattgggaatcaccaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7936" stop="10009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8234" g_stop="8273" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9708" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="392" r_length="352" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E260238" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8234" e_stop="8273"/>
          <exon e_start="9357" e_stop="9708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAA</genome_strand>
        <mrna_strand>TCGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGGAGATGCAATATTTGATAAATTTTACCCAAGTGATGCTGGACCTTATTGGGAATCACCAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E273836" ref_strand="+" ref_description="SGN-E273836 [cLEN-7-E15]">
      <seq>gatgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7938" stop="10118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8238" g_stop="8273" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9818" g_length="462"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="498" r_length="462" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E273836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8238" e_stop="8273"/>
          <exon e_start="9357" e_stop="9818"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGAT</genome_strand>
        <mrna_strand>GATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E261752" ref_strand="+" ref_description="SGN-E261752 [cLEG-61-J14]">
      <seq>tgttggtactggtagtggccaggctgctcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgtaaagtgaagaatgtgttgaaaaattttacagtgcttggaatgaagaatgggaagagtgagaaaaaagtgatttatcctatttactttgaggattggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="7940" stop="10281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8240" g_stop="8273" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9357" g_stop="9981" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="661" r_length="627" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E261752" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>659</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8240" e_stop="8273"/>
          <exon e_start="9357" e_stop="9981"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCTGTAAGTCTCTATTTCTCCACGGTCAATCAAAAATTTCGTTAAGAATATTTTTTTTTAACTACGGAAAGTAATATCTAACCTATCCTTATTCAAAGTGGGTTAAGATCGGAAAAATTATACCGTATAGATTGATACTATCAATTATACTTGCATGTTTAATCTCATTAGTGAATATTCTGACTCTGTCCTGAATTATATAATTTGAGTGTTCATTGACTGATTTTTCATGCTGTAGAATCATATTTTTTTTCCTTTTATAAATGAATGACTTTGTTTAATTTGGTTGAATGGTTGGTCTAAAGTTATGGTAAATATATAATGTTCATTTTCAGGTCTTAAACACCTTAAATAAAAAATTAAAATTAAAATATTGCTAAAAATGAATTGATCTTTGTGAAACAAATCAAAAAAATTAAATTATTTCTTTTTAAACGAAGTGAATCTTATTATAATTGCATAGGAAACAGTAGTCCTCTGTTTATTTAGATAGTCCATCTGGAAAAACAAGAAATCTAGTATTCCGTTTCACTTTATATAACATGATTTTCATATTAATTTTTTCTAAATAGAATGTCATCCTTCTATATTAGTATAATATATAAATGTGCTCCTTAATTTATCTCATTCCACATTTATGTTTTTTTTTATCTTTAGTTTGTCTTATTTTATATTTATGCTCTTTAATTTTAGGTATGCATAAGCAGATACTTAAATTTATATAAACTTGAACAAGTAGACACATGAGTCTTACGTAGGACAACACATGTAGGAGATCATATAGGACAAAAAATAACAGGTAAGATGTCATGCGGGACATGTGTGTCTACTTGTTCAACTTTATACAAATTTAAGTGTCTATTTATGCACACCCAAAGTTGAAGAACATAAACATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAG-ATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTAC-TTGAGGATTGGAA</genome_strand>
        <mrna_strand>TGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTAAAGTGAAGAATGTGTTGAAAAATTTTACAGTGCTTGGAATGAAGAATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTTGAGGATTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367841" ref_strand="+" ref_description="SGN-E367841 [TUS-22-K5]">
      <seq>cataatttgaagccaagttaaaggacatatttatgtattatgtcttctatatttaaaacatctattcatttttggccggcataacgtaaatttcatcatatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8863" stop="10088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9163" g_stop="9788" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E367841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9163" e_stop="9788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAG</genome_strand>
        <mrna_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E244656" ref_strand="+" ref_description="SGN-E244656 [cLED-38-G19]">
      <seq>cataatttgaagccaagttaaaggacatatttatgtattatgtcttctatatttaaaacatctattcatttttggccggcataacgtaaatttcatcatatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8863" stop="10072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9163" g_stop="9772" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E244656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E244656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9163" e_stop="9772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCA</genome_strand>
        <mrna_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E377783" ref_strand="+" ref_description="SGN-E377783 [TUS-21-L5]">
      <seq>catactttgaagccaacttaaaggacatatttatgtattatgtcttctatatttaaaacatctattcatttttggccggcataacgtaaatatcatcatatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgggttcctcagttagctaatctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcaaaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgatatagcatcatggtgttacactacacctaaaataaacaattcattagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaacaaaattggacgatgaaaagtatgaaactatttgattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8863" stop="10045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9163" g_stop="9745" g_length="583"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="584" r_length="584" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E377783" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9163" e_stop="9745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTA-TTGATTTTCC</genome_strand>
        <mrna_strand>CATACTTTGAAGCCAACTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATATCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGGGTTCCTCAGTTAGCTAATCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAAAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGATATAGCATCATGGTGTTACACTACACCTAAAATAAACAATTCATTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAACAAAATTGGACGATGAAAAGTATGAAACTATTTGATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E237501" ref_strand="+" ref_description="SGN-E237501 [cLED-19-I8]">
      <seq>cataatttgaagccaagttaaaggacatatttatgtattatgtcttctatatttaaaacatctattcatttttggccggcataacgtaaatttcatcatatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8863" stop="9887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9163" g_stop="9587" g_length="425"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="425" r_length="425" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E237501" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9163" e_stop="9587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAG</genome_strand>
        <mrna_strand>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E236424" ref_strand="+" ref_description="SGN-E236424 [cLED-13-D9]">
      <seq>tgaagccaagttaaaggacatatttatgtattatgtcttctatatttaaaacatctattcatttttggccggcataacgtaaatttcatcatatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgtttacatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8870" stop="10136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9170" g_stop="9836" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="666" r_length="666" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E236424" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E236424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9170" e_stop="9836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTG</genome_strand>
        <mrna_strand>TGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTG-TTTACATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E241221" ref_strand="+" ref_description="SGN-E241221 [cLED-26-O7]">
      <seq>tgaagccaagttaaaggacatatttatgtattatgtcttctatatttaaaacatctattcatttttggccggcataacgtaaatttcatcatatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8870" stop="10029"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9170" g_stop="9729" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="560" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E241221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9170" e_stop="9729"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATG</genome_strand>
        <mrna_strand>TGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398560" ref_strand="+" ref_description="SGN-E398560 [TUS-19-I21]">
      <seq>catatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatccaactgcaaaagaaaagggtgttgagttgttaagtgaaaatgttgttgaaaatttacaagtgcttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8959" stop="10223"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9259" g_stop="9923" g_length="665"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E398560" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>665</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9259" e_stop="9923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGG</genome_strand>
        <mrna_strand>CATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCCAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAAATGTTGTTG-AAAATTTACAAGTGCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395801" ref_strand="+" ref_description="SGN-E395801 [TUS-18-I21]">
      <seq>catatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataagttgggggggggtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctataga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8959" stop="10060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9259" g_stop="9760" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E395801" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395801" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9259" e_stop="9760"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGA</genome_strand>
        <mrna_strand>CATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAGTTGGGGGGGGGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231731" ref_strand="+" ref_description="SGN-E231731 [cLED-4-B4]">
      <seq>atatgtcaaactccaccgcataaattgaaacagtccttagtgttcataaacttgtttcttttatcctaacttcctccaaaaatgttgtgttcctcagttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="8960" stop="10132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9260" g_stop="9832" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E231731" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231731" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9260" e_stop="9832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATA</genome_strand>
        <mrna_strand>ATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238336" ref_strand="+" ref_description="SGN-E238336 [cLED-17-C2]">
      <seq>tcaatctttagctaagctttacaagaatgtgatagctacagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9057" stop="10269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9357" g_stop="9969" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="620" r_length="613" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E238336" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238336" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9357" e_stop="9969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACT</genome_strand>
        <mrna_strand>TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E392569" ref_strand="+" ref_description="SGN-E392569 [TUS-35-M22](-)">
      <seq>acagacacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagtgntcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9087" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9387" g_stop="10133" g_length="747"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E392569" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E392569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9387" e_stop="10133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCTAT</genome_strand>
        <mrna_strand>ACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTGNTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397909" ref_strand="+" ref_description="SGN-E397909 [TUS-35-O24](-)">
      <seq>agacacaagtccaaagcagcttgattttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9089" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9389" g_stop="10133" g_length="745"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="745" r_length="745" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E397909" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>745</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9389" e_stop="10133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCTAT</genome_strand>
        <mrna_strand>AGACACAAGTCCAAAGCAGCTTGATTTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E538560" ref_strand="+" ref_description="SGN-E538560 [TUS-57-N15]">
      <seq>atttgtgtctgtagctgctttggacttgtgtctgtagctatcacattcttgtaaagcttagctaaagattgagcagcctggccacaagtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctanttattttgtatggtatttctcctagnntgttatggtatgtatcttttaataataataaagtatctaagtactaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9090" stop="10423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9391" g_stop="10123" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="814" r_length="733" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E538560" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.900" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E538560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9391" e_stop="10123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAG-TTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTA</genome_strand>
        <mrna_strand>CCACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTANTTATTTTGTATGGTATTTCTCCTAGNNTGTTA-TGGTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376684" ref_strand="+" ref_description="SGN-E376684 [TUS-19-A18](-)">
      <seq>agtccaaagcagcttgaatttgcagcaaaggttccaaatgttcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaattaataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9096" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9396" g_stop="10134" g_length="739"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="739" r_length="739" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E376684" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9396" e_stop="10134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCTATT</genome_strand>
        <mrna_strand>AGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E405381" ref_strand="+" ref_description="SGN-E405381 [PPC-18-G23]">
      <seq>gccacgggttcgatacatatgtacctctcctaagatgtcaaaatccgaaatcaatccaacataggagcagagttgagtgtagatttggtaacaattgctcaagcaatgcattggtttgatcttccaactttttatgaacatgttaaatggttactcaagaaaccaaatggagtaattgcagcatggtgttacactacacctgaaataaacagctcagtagatgcaatatttgataaattttacactagtgatactggaccttattgggaatcaccaagaaaattggttgatgaaaagtataaaactattgattttccatttgaggctgtagatggttgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttattttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaagttcacaagtgcttggaatgaagatggaaagagtgagaaaaaagtgactcatccaatttacttgaggattgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9135" stop="10283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9428" g_stop="9983" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E405381" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405381" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9428" e_stop="9983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAA</genome_strand>
        <mrna_strand>GCCACGGGTTCGATACATATGTACCTCTCCTAAGATGTCAAAATCCGAAATC-AATCCAACATAGGAGCAGAGTTGAGTGTAGATTTGGTAACAATTGCTCAAGCAATGCATTGGTTTGATCTTCCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGAGTAATTGCAGCATGGTGTTACACTACACCTGAAATAAACAGCTCAGTAGATGCAATATTTGATAAATTTTACACTAGTGATACTGGACCTTATTGGGAATCACCAAGAAAATTGGTTGATGAAAAGTATAAAACTATTGATTTTCCATTTGAGGCTGTAGATGGTTGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTATTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAGTTCACAAGTGCTTGGAATGAAGATGGAAAGAGTGAGAAAAAAGTGACTCATCCAATTTACTTGAGGATTGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E243700" ref_strand="+" ref_description="SGN-E243700 [cLED-35-G13]">
      <seq>tcaatacatatgtacctctcctaagttgtcaaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9137" stop="10269"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9437" g_stop="9969" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E243700" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243700" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9437" e_stop="9969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACT</genome_strand>
        <mrna_strand>TCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231247" ref_strand="+" ref_description="SGN-E231247 [cLED-5-L3]">
      <seq>aaaatccgaaatcgaaacaaaaataggatcagaatcaagtgtagatttagtaacaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctanttattttgtatgttatttctcttagttggtattgttatgtatcttttaataataataaagtatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9167" stop="10412"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9467" g_stop="10112" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E231247" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9467" e_stop="10112"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTA</genome_strand>
        <mrna_strand>AAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTANTTATTTTGTATGTTATTTCTCTTAGTTGGTATTGTTATGTATCTTTTAATAATAATAAAGTATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397908" ref_strand="+" ref_description="SGN-E397908 [TUS-35-M24](-)">
      <seq>aacaaaaataggatcagaatcaagtgtagatttagtacgaattgcacaagcaatgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagtaaaaattgttatgtatcttttaataataataaagtatctaaatagtaattaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9182" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9482" g_stop="10133" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E397908" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E397908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9482" e_stop="10133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCTAT</genome_strand>
        <mrna_strand>AACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTACGAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTAAAAATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAATAGTAATTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E396109" ref_strand="+" ref_description="SGN-E396109 [TUS-19-I21](-)">
      <seq>aacaaaaatgggatcagaatcaagggtagatttagtaccaattgcacaagcaatgcattggtttgatctaccactttttttatgaacttgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggcccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcactggatcatctatttatttcgtatgttatttttcaaagttgttattgttaggtatcatttaatactaataaagtatctaggtcctaggggatccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9182" stop="10419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9482" g_stop="10119" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="639" r_length="639" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="648" polyA_stop="670"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E396109" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396109" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9482" e_stop="10119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCA-ACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTA</genome_strand>
        <mrna_strand>AACAAAAATGGGATCAGAATCAAGGGTAGATTTAGTACCAATTGCACAAGCAATGCATTGGTTTGATCTACCACTTTTTTTATGAACTTGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGCCCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTGGATCATCTATTTATTTCGTATGTTATTTTTCAAAGTTGTTATTGTTAGGTATCATTTAATACTAATAAAGTATCTAGGTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E238518" ref_strand="+" ref_description="SGN-E238518 [cLED-17-E10]">
      <seq>atgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaattaataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9234" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9534" g_stop="10127" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="595" polyA_stop="614"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E238518" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9534" e_stop="10127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAC</genome_strand>
        <mrna_strand>ATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367840" ref_strand="+" ref_description="SGN-E367840 [TUS-22-K5](-)">
      <seq>tgcattggtttgatctaccaactttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttacactacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9235" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9535" g_stop="10130" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E367840" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367840" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9535" e_stop="10130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATC</genome_strand>
        <mrna_strand>TGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290352" ref_strand="-" ref_description="SGN-E290352 [cLES-20-O23]">
      <seq>ttttatgaacatgttaaatggttactcaagaaaccaaatggtgttatagcatcatggtgttaccctacacctaaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacaaacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttcaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcccttgatcatctatttattttgtaacaaaaaaaaaaaaatatggactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9258" stop="10356"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9558" g_stop="10055" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="499" polyA_stop="514"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E290352" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290352" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9558" e_stop="10055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGT</genome_strand>
        <mrna_strand>TTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACCCTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACAAACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTCAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCCCTTGATCATCTATTTATTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E402852" ref_strand="+" ref_description="SGN-E402852 [PPC-8-L14]">
      <seq>caagaaaccaaatggagtaattgcagcatggtgttacactacacctgaaataaacagctcagtagatgcaatatttgataaattttacactagtgatactggaccttattgggaatcaccaagaaaattggttgatgaaaagtataaaactattgattttccatttgaggctgtagatggttgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttattttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaagttcacaagtgcttggaatgaagatggaaagagtgagaaaaaagtgactcatccaatttacttgaggattggaaaagttggaaatttagattgaaagtgtaatcaatacaattagttatgttcacttgatcatccatttattttgtattttctcttagttgttatgttatcttttaataataaaagcatcttagtataaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9284" stop="10391"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9584" g_stop="10084" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="527" polyA_stop="538"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E402852" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.931" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E402852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9584" e_stop="10084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTAT</genome_strand>
        <mrna_strand>CAAGAAACCAAATGGAGTAATTGCAGCATGGTGTTACACTACACCTGAAATAAACAGCTCAGTAGATGCAATATTTGATAAATTTTACACTAGTGATACTGGACCTTATTGGGAATCACCAAGAAAATTGGTTGATGAAAAGTATAAAACTATTGATTTTCCATTTGAGGCTGTAGATGGTTGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTATTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAGTTCACAAGTGCTTGGAATGAAGATGGAAAGAGTGAGAAAAAAGTGACTCATCCAATTTACTTGAGGATTGGAAAAGTTGGAAATTTAGATTGAAAGTGT-AATC-AATACAATTAGTTATGTTCACTTGATCATCCATTTATTTTGTA---T-TTTCTCTTAGTTGTTA-TGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E210453" ref_strand="-" ref_description="SGN-E210453 [cLEC-35-C6]">
      <seq>aaaataaacaactcagtagatgcaatatttgataaattttacacaagtgatgctggcccttattgggaatccccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggcccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaaaaaaagggtgttgagttgttaagtgaaaatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatccaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatttaagtactaattaatacatctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9330" stop="10432"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9630" g_stop="10131" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="503" polyA_stop="539"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E210453" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="0.921" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210453" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9630" e_stop="10131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCT</genome_strand>
        <mrna_strand>AAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGCCCTTATTGGGAATCCCCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGCCCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAAAAAAGGGTGTTGAGTTGTTAAGTGAAAATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATCCAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATTTAAGTACTAATTAATACATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E258519" ref_strand="+" ref_description="SGN-E258519 [cLEG-47-C10]">
      <seq>ttttaattagtacttagatactttattattattaaaagatacataacaataacaactaagagaaataacatacaaaataaatagatgatcaagtgcacataactaattgtatttgctttacactttcaatccaaatttccaacttttccaatcctcaagtaaataggataaatcacttttttctcactcttcccatcttcattccaagcacttgtaaatttttcaacaacatcttcacttaacaactcaacacccttttcttttgcagtttgataagctgaccatgacttcaagtatgtaaaacaagaatccaagtccataactttctcaatcttgaactcaaatggtccattatgatcacatccatctatagcctcaaatggaaaatcaatagtttcatacttttcatcgaccaattttcttggtgattcccaataaggtccagcatcacttgtgtaaaatttatcaaatattgcatctactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="10426" stop="9343"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10126" g_stop="9643" g_length="484"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="484" r_length="484" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E258519" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10126" e_stop="9643"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTAATTAGTACTTAGATACTTTATTATTATTAAAAGATACATAACAATAACAACTAAGAGAAATAACATACAAAATAAATAGATGATCAAGTGCACATAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCCATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACTTCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACATCCATCTATAGCCTCAAATGGAAAATCAATAGTTTCATACTTTTCATCGACCAATTTTCTTGGTGATTCCCAATAAGGTCCAGCATCACTTGTGTAAAATTTATCAAATATTGCATCTACTG</genome_strand>
        <mrna_strand>TTTTAATTAGTACTTAGATACTTTATTATTATTAAAAGATACATAACAATAACAACTAAGAGAAATAACATACAAAATAAATAGATGATCAAGTGCACATAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCCATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACTTCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACATCCATCTATAGCCTCAAATGGAAAATCAATAGTTTCATACTTTTCATCGACCAATTTTCTTGGTGATTCCCAATAAGGTCCAGCATCACTTGTGTAAAATTTATCAAATATTGCATCTACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E376750" ref_strand="+" ref_description="SGN-E376750 [TUS-19-C18](-)">
      <seq>cagtagatgcaatatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcttatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaaacccccccttttacttatgtgcaaattatcatctatttattgtgtaagttatttattttagctgagattgatgcgcatcttttaataataataaagtatataaagaaaaaattaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9343" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9643" g_stop="10113" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="482" polyA_stop="493"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E376750" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>471</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E376750" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9643" e_stop="10113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAA</genome_strand>
        <mrna_strand>CAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCTTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAACCCCCCCTTTTACTTATGTGCAAATTATCATCTATTTATTGTGTAAGTTATTTATTTTAGCTGAGATTGATGCGCATCTTTTAATAATAATAAAGTATATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E231441" ref_strand="-" ref_description="SGN-E231441 [cLED-4-K15]">
      <seq>tatttgataaattttacacaagtgatgctggaccttattgggaatcaccaagaaaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaattaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9355" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9655" g_stop="10127" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="473" r_length="473" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="474" polyA_stop="501"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E231441" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231441" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9655" e_stop="10127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAC</genome_strand>
        <mrna_strand>TATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E300458" ref_strand="-" ref_description="SGN-E300458 [cLET-45-H13]">
      <seq>aaattggtcgatgaaaagtatgaaactattgattttccatttgaggctatagatggatgtgatcataatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttgttattgttatgtatcttttaataataataaagtatctaagtactaacaaccaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9408" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9708" g_stop="10119" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="432"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E300458" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E300458" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="9708" e_stop="10119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTA</genome_strand>
        <mrna_strand>AAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286795" ref_strand="+" ref_description="SGN-E286795 [cLES-14-E5]">
      <seq>tttttttttattaattagtacttagatactttattattattaaaagatacataacaataacaactaagagaaataacatacaaaataaatagatgatcaagtgcacataactaattgtatttgctttacactttcaatccaaatttccaacttttccaatcctcaagtaaataggataaatcacttttttctcactcttcccatcttcattccaagcacttgtaaatttttcaacaacatcttcacttaacaactcaacacccttttcttttgcagtttgataagctgaccatgacttcaagtatgtaaaacaagaatccaagtccataactttctcaatcttgaactcaaatggtccattatgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="10428" stop="9465"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10134" g_stop="9765" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="370" r_length="370" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E286795" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286795" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10134" e_stop="9765"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAGATGTATTAATTAGTACTTAGATACTTTATTATTATTAAAAGATACATAACAATAACAACTAAGAGAAATAACATACAAAATAAATAGATGATCAAGTGCACATAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCCATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACTTCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACA</genome_strand>
        <mrna_strand>TTTTTTTTTATTAATTAGTACTTAGATACTTTATTATTATTAAAAGATACATAACAATAACAACTAAGAGAAATAACATACAAAATAAATAGATGATCAAGTGCACATAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCCATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACTTCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E260231" ref_strand="+" ref_description="SGN-E260231 [cLEG-53-G12]">
      <seq>aatggaccatttgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaagattgaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9474" stop="10283"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9774" g_stop="9983" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E260231" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E260231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9774" e_stop="9983"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAA</genome_strand>
        <mrna_strand>AATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAAGATTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E284718" ref_strand="+" ref_description="SGN-E284718 [cLES-3-H14]">
      <seq>tgagttcaagattgagaaagttatggacttggattcttgttttacatacttgaagtcatggtcagcttatcaaactgcaaaagaaaagggtgttgagttgttaagtgaagatgttgttgaaaaatttacaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcctatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatacaattagttatgtgcacttgatcatctatttattttgtatgttatttctcttagttggtattgttatgtatcttttaataataataaagtatctaagtactaatttattaaaaaaaaatgaatcatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9485" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9785" g_stop="10123" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E284718" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9785" e_stop="10123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTA</genome_strand>
        <mrna_strand>TGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGGTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395869" ref_strand="+" ref_description="SGN-E395869 [TUS-18-I21](-)">
      <seq>gatgttgtgagaaaatttgcaagtgcttggaatgaagatgggaagagtgagaaaaaagtgatttatcttatttacttgaggattggaaaagttggaaatttggattgaaagtgtaaagcaaatagaagtagttatgtgcccctcatcatctatttattttgtatgttatttctcttagttgttattgttatgtttttaggggtcttaataaagtatctaagtactaattaatacaaaaaagaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="9594" stop="10428"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9894" g_stop="10127" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="234" r_length="234" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="235" polyA_stop="257"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E395869" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395869" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9894" e_stop="10127"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATAC</genome_strand>
        <mrna_strand>GATGTTGTGAGAAAATTTGCAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCTTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATAGAAGTAGTTATGTGCCCCTCATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTTTTTAGGGGTCTTAATAAAGTATCTAAGTACTAATTAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395468" ref_strand="+" ref_description="SGN-E395468 [TUS-16-H1](-)">
      <seq>ggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcagataatgaacaaggaatctttgagtcgactgatattggtcattcaaaatcaaatgactaatccagctttgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaatatcacaaaacatgttttaaagccaaggcatgagttgttaaccgacactgagaaggagaagctgttgaagaagtataacttggaagagaagcagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtttgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctatttgaactttttcctcaacccctggggttcctcccttctcaaccttagttcaaatgaagagcttgtaggtatttagtacactattcttgtcactccatttaaattcttgttcggcaagaggaattaatcgaaattaaatttttttttcagtatcgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="13541" stop="10741"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13241" g_stop="13084" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.201" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12415" g_stop="12302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="272" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11424" g_stop="11047" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="273" r_stop="650" r_length="378" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="662"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E395468" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13241" e_stop="13084"/>
          <exon e_start="12415" e_stop="12302"/>
          <exon e_start="11424" e_stop="11047"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAGGTTTGCTTTTGACAGCCTTTGAATTTTCAGAAACATGCCTGTACAACTGTATATCTTTCTAACCACAGCTTTCTACTGACGCTTGATTCCTGGCTTCCTCACTTGAGTTTAGCCAGTAAAAAGATTCTATCGTCTTTTCTTTCTTTTCTGAGAGCTTCACTCAAAAAGGGACTTGCTGTTAAATACCCGAAAGGCTAATATCATTTTCTCATACACTTTACAGTCCATAATCTGGTAAGAGTCTATCTCGTTGATGTGGTCAGAGTCGTTGTTTCCATCTATCACAGTTAATAAAAGTTGGTCCTTTTTGTCCCTCGCGGGATGGTTCAGACACTGAGAGGTTGTTACAGTTTGGCTGGATTCCAGATACTATGGCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTTTCAGTATCGAA</genome_strand>
        <mrna_strand>GGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTTTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTTTCAGTATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552914" ref_strand="+" ref_description="SGN-E552914 [cTSB-5-H10]">
      <seq>gcattttgagccaatacctagaactcttttgcatatagtgttgtcttgaaggaggttaataacaggagccttctaatacttatcttggtaatttaatgttgtagaccagtgttggtgacttctctggattactgtttgaaaaaatgctttatgttcgtcattatccctttactgtgagggtgaaatgacttaaatgctgttctaaaacttttagtttaggtacttatagattgctgcctttttaaatttgatgaatgggaagcattacttgccctatctctctcacactacttatcagaatcaatatgtaggaccttacttgtagagacaggtttctgcgttcatcttatgcttatcaatggtattgttgctgatcactctctccagcagaaatccatagttcacaaggctatatatgcacttcaatgtaccactcttttcttcaaacattatcaatgcagttcattttgtctgagtattgttattgtattgatgttttccagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctacttgaactttttcctcaacccctggggttcctcccttctcaaccttagttcaaatgaagagcttgtaggtatttagtacactattcttgtcactccatttaaattcttgttcggcaagagggaattaatcgaaattaatggttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="12227" stop="10757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11927" g_stop="11057" g_length="871"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="872" r_length="872" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E552914" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11927" e_stop="11057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGA-GGAATTAATCGAAATTAAATTTTTTTTT</genome_strand>
        <mrna_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTGAAAAAATGCTTTATGTTCGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCTGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTACTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGGAATTAATCGAAATTAATGGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553349" ref_strand="+" ref_description="SGN-E553349 [cTSB-5-C1]">
      <seq>gcattttgagccaatacctagaactcttttgcatatagtgttgtcttgaaggaggttaataacaggagccttctaatacttatcttggtaatttaatgttgtagaccagtgttggtgacttctctggattactgtttgaaaaaatgctttatgttcgtcattatccctttactgtgagggtgaaatgacttaaatgctgttctaaaacttttagtttaggtacttatagattgctgcctttttaaatttgatgaatgggaagcattacttgccctatctctctcacactacttatcagaatcaatatgtaggaccttacttgtagagacaggtttctgcgttcatcttatgcttatcaatggtattgttgctgatcactctctccagcagaaatccatagttcacaaggctatatatgcacttcaatgtaccactcttttcttcaaacattatcaatgcagttcattttgtctgagtattgttattgtattgatgttttccagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctacttgaactttttcctcaacccctggggttcctcccttctcaaccttagttcaaatgaagagcttgtaggtatttagtacactattcttgtcactccatttaaattcttgttcggcaagagggaattaatcgaaattaatgttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="12227" stop="10758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11927" g_stop="11058" g_length="870"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="871" r_length="871" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E553349" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11927" e_stop="11058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGA-GGAATTAATCGAAATTAAATTTTTTTT</genome_strand>
        <mrna_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTGAAAAAATGCTTTATGTTCGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCTGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTACTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGGAATTAATCGAAATTAATGTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E553350" ref_strand="+" ref_description="SGN-E553350 [cTSB-5-C15]">
      <seq>gcattttgagccaatacctagaactcttttgcatatagtgttgtcttgaaggaggttaataacaggagccttctaatacttatcttggtaatttaatgttgtagaccagtgttggtgacttctctggattactgtttgaaaaaatgctttatgttcgtcattatccctttactgtgagggtgaaatgacttaaatgctgttctaaaacttttagtttaggtacttatagattgctgcctttttaaatttgatgaatgggaagcattacttgccctatctctctcacactacttatcagaatcaatatgtaggaccttacttgtagagacaggtttctgcgttcatcttatgcttatcaatggtattgttgctgatcactctctccagcagaaatccatagttcacaaggctatatatgcacttcaatgtaccactcttttcttcaaacattatcaatgcagttcattttgtctgagtattgttattgtattgatgttttccagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctacttgaactttttcctcaacccctggggttcctcccttctcaaccttagttcaaatgaagagcttgtaggtatttagtacactattcttgtcactccatttaaattcttgttcggcaagagggaattaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="12227" stop="10776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11927" g_stop="11076" g_length="852"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="853" r_length="853" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E553350" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>852</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11927" e_stop="11076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGA-GGAATTAAT</genome_strand>
        <mrna_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTGAAAAAATGCTTTATGTTCGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCTGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTACTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGGAATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E287125" ref_strand="-" ref_description="SGN-E287125 [cLES-6-E12]">
      <seq>atgcacaggaatgacctaaccaataaggttttggtcatcttttgcgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcagataatgaacaaggaatctttgagtcgactgatattggtcattcaaaatcaaatgactaatccagctttgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaatatcacaaaacatgttttaaagccaaggcatgagttgttaaccgacactgagaaggagaagctgttgaagaagtataacttggaagagaagcagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctatttgaactttttcctcaacccctggggttcctcccttctcaaccttagttcaaatgaagagcttgtaggtatttagtacaaaaaaaaaaaaaaaaaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="19748" stop="10824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19448" g_stop="19422" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13084" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="204" r_length="177" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.201" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12415" g_stop="12302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="318" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11424" g_stop="11136" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="607" r_length="289" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="617" polyA_stop="636"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E287125" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287125" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="19448" e_stop="19422"/>
          <exon e_start="13260" e_stop="13084"/>
          <exon e_start="12415" e_stop="12302"/>
          <exon e_start="11424" e_stop="11136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAGGTTTGCTTTTGACAGCCTTTGAATTTTCAGAAACATGCCTGTACAACTGTATATCTTTCTAACCACAGCTTTCTACTGACGCTTGATTCCTGGCTTCCTCACTTGAGTTTAGCCAGTAAAAAGATTCTATCGTCTTTTCTTTCTTTTCTGAGAGCTTCACTCAAAAAGGGACTTGCTGTTAAATACCCGAAAGGCTAATATCATTTTCTCATACACTTTACAGTCCATAATCTGGTAAGAGTCTATCTCGTTGATGTGGTCAGAGTCGTTGTTTCCATCTATCACAGTTAATAAAAGTTGGTCCTTTTTGTCCCTCGCGGGATGGTTCAGACACTGAGAGGTTGTTACAGTTTGGCTGGATTCCAGATACTATGGCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAG</genome_strand>
        <mrna_strand>ATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTTTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E552814" ref_strand="+" ref_description="SGN-E552814 [cTSB-5-C10]">
      <seq>gcattttgagccaatacctagaactcttttgcatatagtgttgtcttgaaggaggttaataacaggagccttctaatacttatcttggtaatttaatgttgtagaccagtgttggtgacttctctggattactgtttgaaaaaatgctttatgttcgtcattatccctttactgtgagggtgaaatgacttaaatgctgttctaaaacttttagtttaggtacttatagattgctgcctttttaaatttgatgaatgggaagcattacttgccctatctctctcacactacttatcagaatcaatatgtaggaccttacttgtagagacaggtttctgcgttcatcttatgcttatcaatggtattgttgctgatcactctctccagcagaaatccatagttcacaaggctatatatgcacttcaatgtaccactcttttcttcaaacattatcaatgcagttcattttgtctgagtattgttattgtattgatgttttccagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttgttctgttaccaacatgctacttgaactttttcctcaacccctggggttcctcccttctcaaccttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="12227" stop="10856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11927" g_stop="11156" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E552814" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E552814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11927" e_stop="11156"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAG</genome_strand>
        <mrna_strand>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTGAAAAAATGCTTTATGTTCGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCTGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTACTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395362" ref_strand="+" ref_description="SGN-E395362 [TUS-16-H1]">
      <seq>ctcgcagaaccatactcgaaatgcttaaagatcgtggttttgcaatacccaattcagaaatcgacactacacttcaagaattcagagaaaaatatggtcaaacacctgatgttgagcgccttagagtttccgcaatgcacaggaatgacctaaccaataaggttttggtcatcttctgcgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcagataatgaacaaggaatctttgagtcgactgatattggtcattcaaaatcaaatgactaatccagctttgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaatatcacaaaacatgttttaaagccaaggcatgagttgttaaccgacactgagaaggagaagctgttgaagaagtataacttggaagagaagcagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttgagaaggggcaggtagtgaaggtcacgtacagcagtgaaatcatcgagacacatgttacttatcgctgtgtctggtgatgcaactatgtaaatctatcctatgtacaattaaatgagtctgcagcaagcagcctagctaacttaccatatcttggtctgttaccacatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="19882" stop="10905"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19582" g_stop="19422" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="161" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13084" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="338" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.201" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12415" g_stop="12302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="452" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11424" g_stop="11205" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="671" r_length="219" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E395362" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19582" e_stop="19422"/>
          <exon e_start="13260" e_stop="13084"/>
          <exon e_start="12415" e_stop="12302"/>
          <exon e_start="11424" e_stop="11205"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAGGTTTGCTTTTGACAGCCTTTGAATTTTCAGAAACATGCCTGTACAACTGTATATCTTTCTAACCACAGCTTTCTACTGACGCTTGATTCCTGGCTTCCTCACTTGAGTTTAGCCAGTAAAAAGATTCTATCGTCTTTTCTTTCTTTTCTGAGAGCTTCACTCAAAAAGGGACTTGCTGTTAAATACCCGAAAGGCTAATATCATTTTCTCATACACTTTACAGTCCATAATCTGGTAAGAGTCTATCTCGTTGATGTGGTCAGAGTCGTTGTTTCCATCTATCACAGTTAATAAAAGTTGGTCCTTTTTGTCCCTCGCGGGATGGTTCAGACACTGAGAGGTTGTTACAGTTTGGCTGGATTCCAGATACTATGGCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCT</genome_strand>
        <mrna_strand>CTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGGTCTGTTACC-ACATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E432401" ref_strand="+" ref_description="SGN-E432401 [STM-57-A17]">
      <seq>gaaaaatcaaagaagaagagaagagaagagcagagcaagatggatcttaatgggttagcgatggatgttgatggggacaatttgggcacttgtttagctagcttcgttgatgatggtacagttgaaagtcacagatactttcttgctcgcagaaccatactcgaaatgcttaaagatcgtggttttgcaatacccaattcagaaatcgacactacacttcaagaattcagagaaaaatatggtcaaacacctgatgttgagcgcctaagagtttccgcaatgcacaggaatgacctaaccaataaggttttggtcatcttctgtgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcaaataatgaacaaggaatctttgagtcggctgatattggtcattcaaaatcaaatgactaatccagctatgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaacatcacaaaacatgttttaaagccaaggcatgagttgttgaccgacactgagaaggagaagctgttgaagaagtacaacttggaagagaagcagctgccgcggatgtcccagaaggatgcaattgctcggtactatggacttgagaagggacaggtggtgaaggtcacatacagcagtgaaatcatcgagacacatgttacttatcgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="20020" stop="11010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19729" g_stop="19422" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13084" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="483" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.201" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12415" g_stop="12302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="597" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11424" g_stop="11310" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="712" r_length="115" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E432401" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E432401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19729" e_stop="19422"/>
          <exon e_start="13260" e_stop="13084"/>
          <exon e_start="12415" e_stop="12302"/>
          <exon e_start="11424" e_stop="11310"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAGGTTTGCTTTTGACAGCCTTTGAATTTTCAGAAACATGCCTGTACAACTGTATATCTTTCTAACCACAGCTTTCTACTGACGCTTGATTCCTGGCTTCCTCACTTGAGTTTAGCCAGTAAAAAGATTCTATCGTCTTTTCTTTCTTTTCTGAGAGCTTCACTCAAAAAGGGACTTGCTGTTAAATACCCGAAAGGCTAATATCATTTTCTCATACACTTTACAGTCCATAATCTGGTAAGAGTCTATCTCGTTGATGTGGTCAGAGTCGTTGTTTCCATCTATCACAGTTAATAAAAGTTGGTCCTTTTTGTCCCTCGCGGGATGGTTCAGACACTGAGAGGTTGTTACAGTTTGGCTGGATTCCAGATACTATGGCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCT</genome_strand>
        <mrna_strand>GAA-AAATC-AAAGAAGAAGAGAAGAGAAGAGCAGAGCAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGGGACAATTTGGGCACTTGTTTAGCTAGCTTCGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTAAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTCTGTGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAAATAATGAACAAGGAATCTTTGAGTCGGCTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTATGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAACATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTGACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTACAACTTGGAAGAGAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGCGGATGTCCCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGACAGGTGGTGAAGGTCACATACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E401439" ref_strand="+" ref_description="SGN-E401439 [PPC-4-M23]">
      <seq>gaaaaatcaaagaagaagagaagagaagagcagagcaagatggatcttaatgggttagcgatggatgttgatggggacaatttgggcacttgtttagctagcttcgttgatgatggtacagttgaaagtcacagatactttcttgctcgcagaaccatactcgaaatgcttaaagatcgtggttttgcaatacccaattcagaaatcgacactacacttcaagaattcagagaaaaatatggtcaaacacctgatgttgagcgcctaagagtttccgcaatgcacaggaatgacctaaccaataaggttttggtcatcttctgtgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcaaataatgaacaaggaatctttgagtcggctgatattggtcattcaaaatcaaatgactaatccagctatgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaacatcacaaaacatgttttaaagccaaggcatgagttgttgaccgacactgagaaggagaagctgttgaagaagtacaacttggaagagaagcagctgccgcggatgtcccagaaggatgcaattgctcggtactatggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="20020" stop="11076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19729" g_stop="19422" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13084" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="483" r_length="177" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="0.98"/>
            <acceptor a_prob="0.201" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12415" g_stop="12302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="597" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877">
            <donor d_prob="0.983" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11424" g_stop="11376" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="598" r_stop="646" r_length="49" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E401439" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E401439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19729" e_stop="19422"/>
          <exon e_start="13260" e_stop="13084"/>
          <exon e_start="12415" e_stop="12302"/>
          <exon e_start="11424" e_stop="11376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAGGTTTGCTTTTGACAGCCTTTGAATTTTCAGAAACATGCCTGTACAACTGTATATCTTTCTAACCACAGCTTTCTACTGACGCTTGATTCCTGGCTTCCTCACTTGAGTTTAGCCAGTAAAAAGATTCTATCGTCTTTTCTTTCTTTTCTGAGAGCTTCACTCAAAAAGGGACTTGCTGTTAAATACCCGAAAGGCTAATATCATTTTCTCATACACTTTACAGTCCATAATCTGGTAAGAGTCTATCTCGTTGATGTGGTCAGAGTCGTTGTTTCCATCTATCACAGTTAATAAAAGTTGGTCCTTTTTGTCCCTCGCGGGATGGTTCAGACACTGAGAGGTTGTTACAGTTTGGCTGGATTCCAGATACTATGGCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTG</genome_strand>
        <mrna_strand>GAA-AAATC-AAAGAAGAAGAGAAGAGAAGAGCAGAGCAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGGGACAATTTGGGCACTTGTTTAGCTAGCTTCGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTAAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTCTGTGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAAATAATGAACAAGGAATCTTTGAGTCGGCTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTATGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAACATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTGACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTACAACTTGGAAGAGAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGCGGATGTCCCAGAAGGATGCAATTGCTCGGTACTATGGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E206063" ref_strand="+" ref_description="SGN-E206063 [cLEC-20-H16]">
      <seq>tcgcagaaccatactcgaaatgcttaaagatcgtggttttgcaatacccaattcagaaatcgacactacacttcaagaattcagagaaaaatatggtcaaacacctgatgttgagcgccttagagtttccgcaatgcacaggaatgacctaaccaataaggttttggtcatcttctgcgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcagataatgaacaaggaatctttgagtcgactgatattggtcattcaaaatcaaatgactaatccagctttgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaatatcacaaaacatgttttaaagccaaggcatgagttgttaaccgacactgagaaggagaagctgttgaagaagtataacttggaagagaagcagctgccacggatgtctcagaaggatgcaattgctcggtactatggacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="19881" stop="11076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19581" g_stop="19422" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="160" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13084" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="337" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.201" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12415" g_stop="12302" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="451" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11424" g_stop="11376" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="500" r_length="49" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E206063" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19581" e_stop="19422"/>
          <exon e_start="13260" e_stop="13084"/>
          <exon e_start="12415" e_stop="12302"/>
          <exon e_start="11424" e_stop="11376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAGGTTTGCTTTTGACAGCCTTTGAATTTTCAGAAACATGCCTGTACAACTGTATATCTTTCTAACCACAGCTTTCTACTGACGCTTGATTCCTGGCTTCCTCACTTGAGTTTAGCCAGTAAAAAGATTCTATCGTCTTTTCTTTCTTTTCTGAGAGCTTCACTCAAAAAGGGACTTGCTGTTAAATACCCGAAAGGCTAATATCATTTTCTCATACACTTTACAGTCCATAATCTGGTAAGAGTCTATCTCGTTGATGTGGTCAGAGTCGTTGTTTCCATCTATCACAGTTAATAAAAGTTGGTCCTTTTTGTCCCTCGCGGGATGGTTCAGACACTGAGAGGTTGTTACAGTTTGGCTGGATTCCAGATACTATGGCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTG</genome_strand>
        <mrna_strand>TCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309346" ref_strand="+" ref_description="SGN-E309346 [cLEY-22-I17]">
      <seq>tcgaacgaacgtagctgaaaaatcaaagaagagcagagcagaggaagatggatcttaatgggttagcgatggatgttgatggcgaaaatttgggtacttgtttagctagctttgttgatgatggtacagttgaaagtcacagatactttcttgctcgcagaaccatactcgaaatgcttaaagatcgtggttttgcaatacccaattcagaaatcgacactacacttcaagaattcagagaaaaatatggtcaaacacctgatgttgagcgccttatagtttccgcaatgcacaggaatgacctaaccaataaggttttggtcatcttctgcgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcagataatgaacaaggaatctttgagtcgactgatattggtcattcaaaatcaaatgactaatccagctttgaaagctgtggagcttttctcatttaaagttgaaattttccagatcacagatttacttgtcaatatcacaaaacatgtttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="20035" stop="12078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19735" g_stop="19422" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13084" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="491" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668">
            <donor d_prob="0.946" d_score="1.00"/>
            <acceptor a_prob="0.201" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12415" g_stop="12378" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="529" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E309346" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19735" e_stop="19422"/>
          <exon e_start="13260" e_stop="13084"/>
          <exon e_start="12415" e_stop="12378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAGGTAAAGTATGTATTTCTTGTTGGTGTTTACGGTGAACAGTTCAAATACGTGAATAAAACAGGGTACTTAATTACTTATTAGGTTATTAATCAAGATGTGTTCTGTATTTGCTTTAAATGTGCTTGCCAAGTAAGGCTAGATCTCAGAATGAATAAAAATTTGTTATCATTGACTTTTACCTAAGAATGTACAAAGAAAATCCTGATAGGTGTGTGTACAAAATGGCTTTCCCCATTTGATGTCTTTTTTAGTTGCTTGGGTGTAAAAGTTTTTCTCCTGAATGAAGGAAATGTTGGATTTTTAAGCCTATTGAAAAATGCATACGACACAAAGCATTTCCGATGTTTTGTGGACTTCCAAATGTTTCTACTGTCACCGTGAAATAAGGAAAAAATTTGTAAATTTACTTGTCTGGCTTAGAAGGAGCTACATTTACTTGGTTATGTGAGCCTGTTATTTATTTTTGCCGAGACAAGTCCCCAGGCTCCATTTTTTATGATGAAGGTTTTGTTGTATTTTGGTCAAATTTTATTTCCTTGCGCTTATTAATAGTAGGAAATGACACAAACTGCTTTACTTCAGAAATAGAAGTGAATTTTATGCAAACAATAACCGTTATGTCTCAGAGATATACTAAGTGTCTGGCTCCTATTGGCAAACTCTTTCAGATCACAGATTTACTTGTCAATATCACAAAACATGTTTT</genome_strand>
        <mrna_strand>TCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTATAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACAGATTTACTTGTCAATATCACAAAACATGTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E709791" ref_strand="+" ref_description="SGN-E709791 [FA53AF12]">
      <seq>cccgctctaaagtataatggtaatatctcaaaagtacgaaagtacaatgatagcggtattaatgcctaaaaaatatcccgatgtacgatagttcggcagtatatacactttttcccttttaaaagatattcttttggtaattttgacagttcgtaaaacccccaaaacccctcgaacgaacgtagctgaaaaatcaaagaagagcagagcagaggaagatggatcttaatgggttagcgatggatgttgatggcgaaaatttgggtacttgtttagctagctttgttgatgatggtacagttgaaagtcacagatactttcttgctcgcagaaccatactcgaaatgcttaaagatcgtggttttgcaatacccaattcagaaatcgacactacacttcaagaattcagagaaaaatatggtcaaacacctgatgttgagcgccttacagtttccgcaatgcacaggaatgacctaaccaataaggttttggtcatcttctgcgggccaaatgccgtgaaagtgaatgtcatccgcagcattttaactcagataatgaacaaggaatctttgagtcgactgatattggtcattcaaaatcaaatgactaatccagctttgaaagctgtggagcttttctcctttaaagttgaaaattttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="20204" stop="12786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19906" g_stop="19422" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13260" g_stop="13086" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="661" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E709791" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19906" e_stop="19422"/>
          <exon e_start="13260" e_stop="13086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCCTAAAGTATAATGGTAATATCTCAAAAGTACGAAAGTACAATGATAGCGGTATTAATGCCTAAAAAATATCCCGATGTACGATAGTTCGGCAGTATATACACTTTTTCCCTTTTAAAAGATATTCTTTTGGTAATTTTGACAGTTCGTAAAACCCCCAAAACCCCTCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAGGTTAGTTACCCCTTTTTGAAATCAAAGTTTTTTTCTGTCTGAAGTTGAAATCTTTTTGGGGAATGATTAAGCGTGTTATGTTTGGTTGATTACTTCAAAGCAAGCTCCTCCTATCTGCCTAAGTCTCGGTGGGAGGGAGCAGGTGCCCGGTGTATTACTCGAGTTTTATGAAAGCTGGCCTGGGTACCCACAAAGTAATACTATCTTGAAAGCAAGATGCATTTGGTTTTGTTGGGGAAATGTCCTTTTTCTGTTCTTGGTTATATGGATGATAATAGATGATATTGGGAGAAGCTGCTTTAACTTGTACTTTCTCTTTAAGTTTTGTGACATTGTTCCTACATATGGGGATTGAATCTTTTCTTAACATTCTTTTTAAGAATTGATTTTATTAACATTCTATTAAGAGATTTTTGATTCACGTTACTTTATCTATAGTTTCTGAATATGTCAATTTGTTTTCAAACAAAATTGAGGAATCGATGTTTGAATCCACACCTCGAGTATTAGATACTCTCATTCACATACCTGATGTGAGGGATCCCGTCATTCTCTTTTCAGTTGGAGGGAGTATTTAATTGGATGTCTTACCCTTTAGTGAGGAAGTGAAATTGAAATTAGAGCTGGATTTGAAACAATTCAAGAGTTTTTTTAAAAAAAATGTTCATCGTATGATGTGGTTTGAGCTGTTTCATGAAATGACTGATCTACTGGTGTATATCTAGAGATTACGCCTATTCTAAAAGGCCAAATATATAGACGGCCCCTTAAAGTATTGTGAAAAAGGTATATGCATGAGCCGGATTTGGAAATTTTCAGAAGGCATATGCAGGATTGGGAAATAGATGATCTTCTTAACTTGCTGTCCTGACTGGGGAGCTACACATTCCATGAGCAGGAGGTAGACACTATCAGATGGGGGAAAAAACAGATGGCCAATAATCAGTCAAGATAGGATACTTATATTTCTGTGCTCAGAATCAAATGGTAGATAATTGTCGCTTATATGGAGAACTAAACTTCCACCCAAGGTCATTTATTTCACCTGGACAGTTCTGAAGGAGACGTGCCTTACTCAGAATAATTTGATGAAAAAGGAAAATTCAGCTATCCAACAGATGGTATCTGTGTAAAAAGAGAAGCTGAAATTCCTGCCCATCAGTTTCTACATTGTGAAGTTGCCTTTGATTTTTGGAGCATGTTTATGTGCATTTCTAGCCTCAGATGGGTCACTCCTAAATCAGTAAGGGAAGCATACAGGTCTTTTTGTTTGTGGAAAGTTGATAAATACATCACGAATATCTAGAGAATGATTCTAATAGAAACCAAGATGAAAATAAAACTTTACTGATTAAATTAAATGAAGTGCAAGAATTAACCAATAACTAAGTGTGTATGGAGTGGACAAATCTCCAAATATAAAGACATATATAATACTCCCTTCGTTTAAAAAAGAATGACCCTATTTCCTTTATAGTTTGTTTAAGAAAGAATGATCCCTTTCTTTATTTGGCAACACTTTTAACTTTAACTTTTCACGTGGCATGTTTAAGACGACAAGATTAAAGGACATTTTGGTACATTTGACATAACATTAATTTAGAACTACAGGATCAAAAAGTTTTCTTTCCTTTCTTAAACTCCGTTCAAAGTCAATCTAGGTCATCTTTTTTGAAACGGAGGGAGTACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATCCTAAACATAAAGATAACTCCTAACACAGAAATAGCTATTTTTGTAGATAACTGTCTAATAACGGCTGCCAATAACTATTATAGATAAGTATTGCTTATATATTTTATCCTCTTTAAAAAGAAACGAAGATAAACAGGTAGTTCGTATCAGTGCATCCCCTCTGAGAAGTCGCCTTGTCCTCAATGCGAAAAGAAGGAGCCTAATCTACAATGAGATAATAGATCTCCCAACTAGCTTCTTCAAGGTGACGGTCGACCCATTGAACTAGCCGATCTCATCCCTTGCAGTTTGTAACATATCTTCCAATTAGGTTGAGTAGTGTTGAGAGAAACTAACCAGTTGATACCAAAAACCAAATCAGCCCCTCCAAGTGCAAAAGAATAATAATCCTGAGTGATGGTAAAACCTGACAATTGAATTTGAAGATTCTGACAAACTTTATTGCAGCGAATGATGTCCCCATTCCCTAATTGCACGCCAAATGTTTGACATATGTCTAATGAGAGCTTATACTTCTCTACAATGGATTCAACCACAAAATTATGTGTGGAACCACTATCCACAAGTATTAAAACCTTTCTACGGTTAATTTCACCTTGAGGCTTCATTGTAGAACCAATTGACTGTCCCAAAATGGCATGGAACGAAATTTCAGTATTGTCAGTTTCTTGAGAGTCGCAAGCAGTTGTTGCATTAACCAAACCAATATCTTCCAACTGGTCTCCACATGTAAGCTCCATGAGAGACAATTTCACTAATTTACCATTATGACCGGGTGCAAATTTCTCATGGCAACGATAACAAAGTCCGTAAGCCATTAGGTTTCTCCTCTTACTTTCCCATGTTTGCATTCGAAGAGGTTGGGAAGTGGATGGATTAGGAGAAGCATTGTTGCGTAGATTTTTGAAGTGGAGTTAATATTGTTCTGGGTGTTTATAGAAGAGTGCAATGAGTTTTGAATAGTGGATCTGCTGGTTGGGGTCCAATTAGACTTTCCATTACTGCGAATTGGCCTAATTTATTTTCAAATTCGAGTGCCAAACTCATGGCTCTATAAATTGTTTTGGGCTTGTGCATCCTAACATCAGATTTAATTTCCTCTTTTAGCCCATTCAAAAACACCCCTAAAAGACAATGATCTGGCCAGTTTGTTATCCTAGGCGAAAATTTTGCAAATTCTTGACAATACTCTTGTATAGAACCTTTGTGTTGAATGCTACAAAGATGCTCGTCAGGATTTTGAAACTCTGCAGGACCATAATTTTCCTTCAATGTTTTAACAAGGTCTTCCCAATAAAGCAAAGTCCGCTCATGATTTATCCAAGAGAAGAGATCAAGAGTATCACCTTCCAGATACATCGCTACGATGTCAACTTTGTGTTCCTCAGGAGTTTGATAGTAGCAGAAATATTTTTCTGCTTTCAAAATTTATCCCCTGGGATCACCTCATCACCTCGTTCAAATCTAGGAAATTCCATCTTAGTGTGTGGCCTCCAGGAAGGATTTTTTGGCCACATTGGGCTATTAATGTCTTCTTCCTCTTCTTGCCTAACATATTTTCCTCCAATACTCGTCTGGTGACTGGTTACCCCTTCTTGGGTGCAACCATTCTGGGCTTTCAATGTAGCCACTTCTGCTGCCAACAGATCAACAATATTTAGTTTTGATGCTATGACAGATAATTGTTGGTGGGAGTGTTTTCTTGAGAAGTAGAAGATCTGTTATTGACCATATTGGATCGATCTACTTTGATACCAAACTGATAGATACCAAGATGAAAATAAAACTTAACTGATTAAATGAAGTGAAAGAATCTTAAACACTGCATTAACCAATAACTAAAACTAAGTCCGTATGGAATGAACAGATCTCCAAATATTTGTCTTTTTTTTTCATATTCAACAAAAATAATACTTTTCTTCTTCTTACAGAATCTCTGCTAGATACATATATTTATACTAAACATAGAGATAACTCCTAACACAGAAATAGATACTGCTGTAGATAACTTCTAATAACTGCTGTCAATAACTACTATAGATAAGTACTGCTTATATATTTTATCCTCTTTAAAAAGAAACCAAGATAAAACAGGTAGTTCATATCAGATTCCTGGTTGCATTTTTTGGAGTATTTGGTTACAAAGGAATATGCGATGTTTTGATGGGGTCTCAACTCCCATAGATTCTTTAAAGGCTAAATGTATTGCTAGTTTATTCTTCTGTTCTTGGTTGTCCTCAGTAAATAGTCCAGATTAACTGCTGCACTTCAGTAGCTCTGGCTTAGTCAGTTTTCCTATAGAAGCCAACTTTTTTTATGTTTTTTGTAAGCTTCAATGACACATCTTGTAACCAATGCATCTTCTTGATGCTTTTCTTAAAAATGAAATCACTTTATCGAAAGAAAAAAGGTTCACGACAATTTTCATTTAGATACTTTAACTATGCCCTTTACCTATTAAGCACTCCAAGTTCAATCAATATGTACCTATTAAAAATATAGCTCTGAAGTGAGAAATAGCGTGAGTTTCACTGGGAGGAAGTGTGTGGGTGTTTTTCTTATGCTAACTTGAAGCCTTTTTTTGAGAAGGCTAACATGGAAGCCTTTAATCGTAAAAGAAAACCCTTCTCCTTCATATCTTCCATTCTCAATTGAATTATCCCCCAGCTTTTTCACCTTCATCTTCCGCCTCCTTCCCGTGCTTGGTCTCCAATCCTGTCTAACCAATAAATCCATAAAGCTCATCATCAGTTACCTCTTCACATGGGCTTTAAATCGAACTTTGCTTTCACAAATGAACACTATGCTTGTATGCTGTGAAGATGGATTGGAGATATCAATTTGTTTACTTTAAAGGTAGAGAAGTGAGGCCACTTATGGGATCACACTAGGTATGTTGTTGCAATGGTAGAGACGTGAGAGAGAGAAGGAAAGAGATCTGAATGGTGCTCTTGTTTTCTCTTGCGGTGATGAAAAGTAAAGCGAATGCTGGTTGACTATAAATTTAATCCAAATCACTAAAACTGCATAAACAACTCTGACGTTCGGTGGTTGTCGTTCTTTTAAGGTTCAACTCTTATTTTGCTGTGTTCTTCTCTGTATTATTTATTTATGTAAAAGGAATCTTAGCTTAGTTAGTGCGGATGTTATCTTTTCTTTTTTGGTTGATGAAAGTAGATGAATGGAACTAGGAAAGAATACAAATGGGGAGGGGTGGGGTTGAACCCTTGAAGAAGACGAACTAGCTTGAGGACAGTTGAGGTGGTGGGGGACAGTTTCTGAAATAAATTTTTATTTTTTAATTAGGGAAGAGGCCACGTGTCGTCCTTCCATTCGTTCATTATCCATGTCACACGCGAGTGAATCTGACACATTTTGTGTCTTTTGCTGATTCTCACTTAAGTAGTTAATTTTGCACACATTAGTTGAAGTGCTAATGTTAAGTCGGTGAAGATCCCGGTTGAAGTGTCCAGATGAAAATTGGTGGCAACTTTAAGGGGCTATCTTTGTGTTTTTCTTCTGAAAATATGTTCACATCTTGGATAGAAAAGGGTGGAATGTGAAGATGAAACTTGCAACTTCTGTAGATAATTTAACATGTCCTGTCAGCGCGTTGAGTCGGCCTAGCTAGTAATGATGATGCCTACTACTTCTCTTTTCGATGCCTTAAGTATAACGCTTTGAAGTTACTTTCACTGTGTCACTTTTTTGACTAATCTTTCACTGTGTCACTTTATATGTTAGAAACAATACTTCAGTGATACTTAGAAGCACTTCCTAAAATAAAACTTGATAGACAGCTTTTTATGACTAGTATTTTCATTTAGAAACTTATGGATGAACTCTAGAGAGCATAATGTTTGAAAGTCTAGGATACTAGTAAGGGTACTGTGTCTGATTAAGCTTGATTGCACTACAAGATGGTTAAGCCAATTCTTGTATTGGGGTATGAACTTTGATGTAGGGAAAACCGAGATGTAGAATTATGCTTTACTTTTTTGCATTAAGCATGGAAAAGAAATTCTAAAATGTATGGTATTGAGATTTTTGCATAGTCTTTTGAGAGGTTGTTTGCACTTTGCACAGCTCATTTCTGAGTTCCATATCCAAATTTGTCCTTTTGGGTTAATGTATCTTCAAATTTATTGTTGATCCGTGCTGGAAGCGCATCACTTTTGTTATGTCTATTCGATCTTATGTGAAGTGAATGCATTCTATGTATCTGCAAGACTTCTTATGGAAATTTGGAGGCTTGTCTGGGTTCAATAAAACATATGGAAACTCAAATCATCAAAATTTAAGAAGCAAAAAAAGTCGTCGTTGCCTTAACTGGGTAGATGCCTCAGCATTTTGGAACATGGTCTCTGATGAAGGACATGCATTTGCTTCATAGATTATTAATGTCTTATGTATTTGTACTGGTTGCAGGTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTG-AAATTTTCC</genome_strand>
        <mrna_strand>CCCGCTCTAAAGTATAATGGTAATATCTCAAAAGTACGAAAGTACAATGATAGCGGTATTAATGCCTAAAAAATATCCCGATGTACGATAGTTCGGCAGTATATACACTTTTTCCCTTTTAAAAGATATTCTTTTGGTAATTTTGACAGTTCGTAAAACCCCCAAAACCCCTCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTACAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCCTTTAAAGTTGAAAATTTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E343285" ref_strand="+" ref_description="SGN-E343285 [cTOF-17-J13]">
      <seq>tgaaattcttggctctcctctttgtttcttccgcatgggctcatggccagtggcctagcaaggacatacacaaatgtgtggtctatcaatcttcgtattttgactatttctttttaccttttcttttaaaaataaattctgtccataaattaattgtagaagatgacacaaccaatgtgtttgttgtatatctgaaagccacaaaacacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtattgctgagtggtacccaataatgccaattttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtgggttgtgtggtgggattaggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="21957" stop="23317"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22257" g_stop="23017" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E343285" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22257" e_stop="23017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATTCTTGGCTCTCCTCTTTGTTTCTTCCGCATGGGCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTA-TGCTGAGTGGTACCCAATAATGCCAA-TTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGT-GGTTGTGTGGTGGGA-TAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGA</genome_strand>
        <mrna_strand>TGAAATTCTTGGCTCTCCTCTTTGTTTCTTCCGCATGGGCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATTGCTGAGTGGTACCCAATAATGCCAATTTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGGTTGTGTGGTGGGATTAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E268897" ref_strand="+" ref_description="SGN-E268897 [cLEM-4-J23]">
      <seq>gctcatggccagtggcctagcaaggacatacacaaatgtgtggtctatcaatcttcgtattttgactatttctttttaccttttcttttaaaaataaattctgtccataaattaattgtagaagatgacacaaccaatgtgtttgttgtatatctgaaagccacaaaacacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="21995" stop="23119"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22295" g_stop="22819" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E268897" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268897" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22295" e_stop="22819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAA</genome_strand>
        <mrna_strand>GCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E346100" ref_strand="+" ref_description="SGN-E346100 [cTOF-34-C21]">
      <seq>acaaaacacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcatggttggtgctttaatggagctggtgattgtaagttgatccctcaagctccta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22157" stop="23400"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22457" g_stop="23100" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="644" r_length="644" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E346100" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22457" e_stop="23100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTA</genome_strand>
        <mrna_strand>ACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E315520" ref_strand="+" ref_description="SGN-E315520 [cTOA-22-P20]">
      <seq>aaaacacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcatggttggtgctttaatggagctggtgattgtaagttgatccctcaagctcctagggatggccctcaggttcatacgtccaaaagagcttgcgcaactgtttatccaagttgtgtgcaaatgacattctttggttttggccgaactctgatcctctatacnaggacatatatttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22159" stop="24805"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22459" g_stop="23114" g_length="656"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24395" g_stop="24505" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="657" r_stop="766" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E315520" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22459" e_stop="23114"/>
          <exon e_start="24395" e_stop="24505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAGGTAATATTGGTTTTCTACTTTTGATTATGGCCTTTATAGACTGTCTTTTTGTTGTAATGATCATATCAAGTGTTTGCAAAACAAAGAAGTTTGGTGTTGATTAACTTGGCTAAAAGTGAGGAGGATAATAGAGATACCCTTTTGTTGCTTGTAGACCCAACTTTTGCACTGTTAACCAGGTATCAACATTTTTAATTCTATAAATGTCAATTCTGTTCAATAAAATGGTGGAGTTTTTGCGTGAGAACATTTAAATATAGCTTCACACTGTGGGATGAGCTGTGTGATCTTGAATACTCGTGTTTGATTTCACTGAATTTGATAATCTTGATTTGCTCAGGAAAAGTCTGAAAGTTATATAGGGGGTGTTAAATGTTGCGAAAATGCTTGTTCATTTGGAGATGCATTGAAAGACAACACTCTACCCATACTAACCTTTTAGCCTTATACGCGACCTCCACTCTTTCCTAGCTAGAGTCATGTCCTTGGTAATATGAAGTTGCGTCATGTTTTGTATACTCACCTCTTCCCAATACTTCTTCGGTCTACCTCTACCTCTCATCGTACTCCCTATAGCCAACATCTATTACACCTCCTCATTAGAGCGTCATCGCACCTTCTCTTCACATGTCCAAACCATTTGAGACTCCATTAAATAATAACTAGACCAAATTATTAATGAAATAGTTATATCAGTATGGTCAAATATCAATTCCAATTCCAGTGCTAGAGCACATAATTTACTGTTGTCATCATTGGTCAAGGTATAGATCAACCATTTGTTTTTTCTTTCTGCTATTCTGAAGGTTTTCCTAGGAAACTTATAGGTAAAGAACTCGAGCATTTTGCATTTTGACATCGTACTTTTCATGCACAGTTCACCATGACATTTATTTGAAGACTTAATCAACTCGGTTCACAATTAAAAGGATAATAACCTTGTGATCATAGCTTACCACCTTTACCTGTGTGACCTTAGTCCTTTATAATGGTGATTGGGACTTCGTAAGAACTGGTGAAGGCTTTCTATCTTTATTGACTGATGAAAGATGATGACAACTCTCATAATTAATAGTCCTGGATATTCTTTTATTTTGTTTTTTCACCCTTTTTCTTGTGAATGTGAATCTTCATTTTCCAAACATGGGAAGTTTGTGTATTGTGTACTTCTCGGAAATGCTTATAGATAAGCACTAGTATTTGACAACAATTTTACAACAGTATTTGCATTAGCTTTACACAAGTTAACTGGGAATGACATTTTTGTATTAGTCGTGCAGGTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATG</genome_strand>
        <mrna_strand>AAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGC-AAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACNAGGACATATATTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E310361" ref_strand="+" ref_description="SGN-E310361 [cTOA-1-I16]">
      <seq>aaaacacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22159" stop="23166"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22459" g_stop="22866" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E310361" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22459" e_stop="22866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGC</genome_strand>
        <mrna_strand>AAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309515" ref_strand="+" ref_description="SGN-E309515 [cTOA-3-J3]">
      <seq>aacacttttctagttttatcagtcaccacttttattctggatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22161" stop="23294"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22461" g_stop="22994" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E309515" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E309515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22461" e_stop="22994"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCT</genome_strand>
        <mrna_strand>AACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGGATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323090" ref_strand="+" ref_description="SGN-E323090 [cTOB-28-M2]">
      <seq>aacacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccaggtcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcgattcagacacaaaatgcaaaattcaagggttttactgctacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22161" stop="23062"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22461" g_stop="22762" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E323090" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323090" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22461" e_stop="22762"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTC</genome_strand>
        <mrna_strand>AACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGGTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCGATTCAGACACAAAATGCAAAATTCAAGGGTTTTACTGCTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E728242" ref_strand="+" ref_description="SGN-E728242 [LA17AF09]">
      <seq>cacttttctagttttatcagtcaccacttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcatggttggtgctttaatggagctggtgattgtaagttgatccctcaagctcctagggatggccctcaggttcatacgtccaaaagagcttgcgcaactgtttatccnagttgtgtgcaaaatgacattcttttggntttggccgacctctgatcctctatacaaggacatatatttgatgaaaagggctccctatatacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22163" stop="24827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22463" g_stop="23114" g_length="652"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="652" r_length="652" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24395" g_stop="24527" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="786" r_length="134" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E728242" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22463" e_stop="23114"/>
          <exon e_start="24395" e_stop="24527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAGGTAATATTGGTTTTCTACTTTTGATTATGGCCTTTATAGACTGTCTTTTTGTTGTAATGATCATATCAAGTGTTTGCAAAACAAAGAAGTTTGGTGTTGATTAACTTGGCTAAAAGTGAGGAGGATAATAGAGATACCCTTTTGTTGCTTGTAGACCCAACTTTTGCACTGTTAACCAGGTATCAACATTTTTAATTCTATAAATGTCAATTCTGTTCAATAAAATGGTGGAGTTTTTGCGTGAGAACATTTAAATATAGCTTCACACTGTGGGATGAGCTGTGTGATCTTGAATACTCGTGTTTGATTTCACTGAATTTGATAATCTTGATTTGCTCAGGAAAAGTCTGAAAGTTATATAGGGGGTGTTAAATGTTGCGAAAATGCTTGTTCATTTGGAGATGCATTGAAAGACAACACTCTACCCATACTAACCTTTTAGCCTTATACGCGACCTCCACTCTTTCCTAGCTAGAGTCATGTCCTTGGTAATATGAAGTTGCGTCATGTTTTGTATACTCACCTCTTCCCAATACTTCTTCGGTCTACCTCTACCTCTCATCGTACTCCCTATAGCCAACATCTATTACACCTCCTCATTAGAGCGTCATCGCACCTTCTCTTCACATGTCCAAACCATTTGAGACTCCATTAAATAATAACTAGACCAAATTATTAATGAAATAGTTATATCAGTATGGTCAAATATCAATTCCAATTCCAGTGCTAGAGCACATAATTTACTGTTGTCATCATTGGTCAAGGTATAGATCAACCATTTGTTTTTTCTTTCTGCTATTCTGAAGGTTTTCCTAGGAAACTTATAGGTAAAGAACTCGAGCATTTTGCATTTTGACATCGTACTTTTCATGCACAGTTCACCATGACATTTATTTGAAGACTTAATCAACTCGGTTCACAATTAAAAGGATAATAACCTTGTGATCATAGCTTACCACCTTTACCTGTGTGACCTTAGTCCTTTATAATGGTGATTGGGACTTCGTAAGAACTGGTGAAGGCTTTCTATCTTTATTGACTGATGAAAGATGATGACAACTCTCATAATTAATAGTCCTGGATATTCTTTTATTTTGTTTTTTCACCCTTTTTCTTGTGAATGTGAATCTTCATTTTCCAAACATGGGAAGTTTGTGTATTGTGTACTTCTCGGAAATGCTTATAGATAAGCACTAGTATTTGACAACAATTTTACAACAGTATTTGCATTAGCTTTACACAAGTTAACTGGGAATGACATTTTTGTATTAGTCGTGCAGGTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTC-TTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGCCTCCCTATATACCTG</genome_strand>
        <mrna_strand>CACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCNAGTTGTGTGCAAAATGACATTCTTTTGGNTTTGGCCGACCTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGGCTCCCTATATACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E320643" ref_strand="+" ref_description="SGN-E320643 [cTOB-27-G7]">
      <seq>ttttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaactggaactcaaccagttcatttcccaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttggatganaagactgaaaatganaatcaagaagaaaattttgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22190" stop="23140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22490" g_stop="22840" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E320643" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E320643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22490" e_stop="22840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTT-GATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTG</genome_strand>
        <mrna_strand>TTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTGGAACTCAACCAGTTCATTTCCC-AAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGGATGANAAGACTGAAAATGANAATCAAGAAGAAAATTTTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445059" ref_strand="+" ref_description="SGN-E445059 [cSTA-44-F23]">
      <seq>tttgttctgcatttgcattttaatggggttttgaagattttttttttaaaaaaagatttgaactttaattaacaaatttcaagattcagccatgcaaactatcaaagcatcttccttttcaccatttcacctcaacttgaactcaactagttcatttcccaaaattaccaacttgtacattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagagccaaaatgcaaaattcaaggtttttactgctatttccctaagtgtttcaactgaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatgggaagaaagtgatgggtattgatgtggttgtgtggtgggataagaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcatggttggtgctttaatggagctggtgattgtaagtttatccctcaagctcctagggacgggccttcggttcatacgtncaaaagagcttgtgcaactgtttatccaagttgtgtgcaaaatgacattcttttggttttggccaaactctgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22191" stop="24779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22491" g_stop="23114" g_length="624"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.926" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24395" g_stop="24479" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="702" r_length="86" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E445059" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22491" e_stop="23114"/>
          <exon e_start="24395" e_stop="24479"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTT-AAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAGGTAATATTGGTTTTCTACTTTTGATTATGGCCTTTATAGACTGTCTTTTTGTTGTAATGATCATATCAAGTGTTTGCAAAACAAAGAAGTTTGGTGTTGATTAACTTGGCTAAAAGTGAGGAGGATAATAGAGATACCCTTTTGTTGCTTGTAGACCCAACTTTTGCACTGTTAACCAGGTATCAACATTTTTAATTCTATAAATGTCAATTCTGTTCAATAAAATGGTGGAGTTTTTGCGTGAGAACATTTAAATATAGCTTCACACTGTGGGATGAGCTGTGTGATCTTGAATACTCGTGTTTGATTTCACTGAATTTGATAATCTTGATTTGCTCAGGAAAAGTCTGAAAGTTATATAGGGGGTGTTAAATGTTGCGAAAATGCTTGTTCATTTGGAGATGCATTGAAAGACAACACTCTACCCATACTAACCTTTTAGCCTTATACGCGACCTCCACTCTTTCCTAGCTAGAGTCATGTCCTTGGTAATATGAAGTTGCGTCATGTTTTGTATACTCACCTCTTCCCAATACTTCTTCGGTCTACCTCTACCTCTCATCGTACTCCCTATAGCCAACATCTATTACACCTCCTCATTAGAGCGTCATCGCACCTTCTCTTCACATGTCCAAACCATTTGAGACTCCATTAAATAATAACTAGACCAAATTATTAATGAAATAGTTATATCAGTATGGTCAAATATCAATTCCAATTCCAGTGCTAGAGCACATAATTTACTGTTGTCATCATTGGTCAAGGTATAGATCAACCATTTGTTTTTTCTTTCTGCTATTCTGAAGGTTTTCCTAGGAAACTTATAGGTAAAGAACTCGAGCATTTTGCATTTTGACATCGTACTTTTCATGCACAGTTCACCATGACATTTATTTGAAGACTTAATCAACTCGGTTCACAATTAAAAGGATAATAACCTTGTGATCATAGCTTACCACCTTTACCTGTGTGACCTTAGTCCTTTATAATGGTGATTGGGACTTCGTAAGAACTGGTGAAGGCTTTCTATCTTTATTGACTGATGAAAGATGATGACAACTCTCATAATTAATAGTCCTGGATATTCTTTTATTTTGTTTTTTCACCCTTTTTCTTGTGAATGTGAATCTTCATTTTCCAAACATGGGAAGTTTGTGTATTGTGTACTTCTCGGAAATGCTTATAGATAAGCACTAGTATTTGACAACAATTTTACAACAGTATTTGCATTAGCTTTACACAAGTTAACTGGGAATGACATTTTTGTATTAGTCGTGCAGGTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTC-TTTGGTTTTGGCCGAACTCTGATC</genome_strand>
        <mrna_strand>TTTGTTCTGCATTTGCATTTTAATGGGGTTTTGAAGA-TTTTT-TTTTTA------AAAA-AAGATTTGAACTTTAATTAACAAATTTCAAGATTCAGCCATGCAAACTATCAAAGCATCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACTAGTTCATTTCCCAAAATTACCAACTTGTACATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGAGCCAAAATGCAAAATTCAAGGTTTTTACTGCTATTTCCCTAAGTGTTTCAACTGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGGAAGAAAGTGATGGGTATTGATGTGGTTGTGTGGTGGGATAAGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTTATCCCTCAAGCTCCTAGGGACGGGCCTTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATACGTNCAAAAGAGCTTGTGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTTGGTTTTGGCCAAACTCTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E445060" ref_strand="+" ref_description="SGN-E445060 [cSTA-44-F23]">
      <seq>tttgttctgcatttgcattttaatggggttttgaagattttttttttaaaaaaagatttgaactttaattaacaaatttcaagattcagccatgcaaactatcaaagcatcttccttttcaccatttcacctcaacttgaactcaactagttcatttcccaaaattaccaacttgtacattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagagccaaaatgcaaaattcaaggtttttactgctatttccctaagtgtttcaactgaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatgggaagaaagtgatgggtattgatgtggttgtgtggtgggataagaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22191" stop="23325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22491" g_stop="23025" g_length="535"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E445060" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.015" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E445060" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22491" e_stop="23025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTT-AAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGG</genome_strand>
        <mrna_strand>TTTGTTCTGCATTTGCATTTTAATGGGGTTTTGAAGA-TTTTT-TTTTTA------AAAA-AAGATTTGAACTTTAATTAACAAATTTCAAGATTCAGCCATGCAAACTATCAAAGCATCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACTAGTTCATTTCCCAAAATTACCAACTTGTACATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGAGCCAAAATGCAAAATTCAAGGTTTTTACTGCTATTTCCCTAAGTGTTTCAACTGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGGAAGAAAGTGATGGGTATTGATGTGGTTGTGTGGTGGGATAAGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E329961" ref_strand="+" ref_description="SGN-E329961 [cTOD-5-B11]">
      <seq>tttattctgtatttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22191" stop="23224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22491" g_stop="22924" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="434" r_length="434" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E329961" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22491" e_stop="22924"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGT</genome_strand>
        <mrna_strand>TTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E407792" ref_strand="+" ref_description="SGN-E407792 [PPI-8-F19]">
      <seq>gttctgcatttgcattttaatggggttttgaagattttttttttaaaaaaagatttgaactttaattaacaaatttcaagattcagccatgcaaactatcaaagcatcttccttttcaccatttcacctcaacttgaactcaactagttcatttcccaaaattaccaacttgtacattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagagccaaaatgcaaaattcaaggtttttactgctatttccctaagtgtttcaactgaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatgggaagaaagtgatgggtattgatgtggttgtgtggtgggataagaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtattcatggttggtgctttaatggagctggtgattgtaagtttatccctcaagctcctagggacgggcctccggttcatacgtccaaaagagcttgtgcaactgtttatccaagnttgtgtgcaaaatgacattcctttggttttggccaaactctgatcctctata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22195" stop="24786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22494" g_stop="23114" g_length="621"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.926" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24395" g_stop="24486" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="708" r_length="94" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E407792" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E407792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22494" e_stop="23114"/>
          <exon e_start="24395" e_stop="24486"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTT-AAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTA-TCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAGGTAATATTGGTTTTCTACTTTTGATTATGGCCTTTATAGACTGTCTTTTTGTTGTAATGATCATATCAAGTGTTTGCAAAACAAAGAAGTTTGGTGTTGATTAACTTGGCTAAAAGTGAGGAGGATAATAGAGATACCCTTTTGTTGCTTGTAGACCCAACTTTTGCACTGTTAACCAGGTATCAACATTTTTAATTCTATAAATGTCAATTCTGTTCAATAAAATGGTGGAGTTTTTGCGTGAGAACATTTAAATATAGCTTCACACTGTGGGATGAGCTGTGTGATCTTGAATACTCGTGTTTGATTTCACTGAATTTGATAATCTTGATTTGCTCAGGAAAAGTCTGAAAGTTATATAGGGGGTGTTAAATGTTGCGAAAATGCTTGTTCATTTGGAGATGCATTGAAAGACAACACTCTACCCATACTAACCTTTTAGCCTTATACGCGACCTCCACTCTTTCCTAGCTAGAGTCATGTCCTTGGTAATATGAAGTTGCGTCATGTTTTGTATACTCACCTCTTCCCAATACTTCTTCGGTCTACCTCTACCTCTCATCGTACTCCCTATAGCCAACATCTATTACACCTCCTCATTAGAGCGTCATCGCACCTTCTCTTCACATGTCCAAACCATTTGAGACTCCATTAAATAATAACTAGACCAAATTATTAATGAAATAGTTATATCAGTATGGTCAAATATCAATTCCAATTCCAGTGCTAGAGCACATAATTTACTGTTGTCATCATTGGTCAAGGTATAGATCAACCATTTGTTTTTTCTTTCTGCTATTCTGAAGGTTTTCCTAGGAAACTTATAGGTAAAGAACTCGAGCATTTTGCATTTTGACATCGTACTTTTCATGCACAGTTCACCATGACATTTATTTGAAGACTTAATCAACTCGGTTCACAATTAAAAGGATAATAACCTTGTGATCATAGCTTACCACCTTTACCTGTGTGACCTTAGTCCTTTATAATGGTGATTGGGACTTCGTAAGAACTGGTGAAGGCTTTCTATCTTTATTGACTGATGAAAGATGATGACAACTCTCATAATTAATAGTCCTGGATATTCTTTTATTTTGTTTTTTCACCCTTTTTCTTGTGAATGTGAATCTTCATTTTCCAAACATGGGAAGTTTGTGTATTGTGTACTTCTCGGAAATGCTTATAGATAAGCACTAGTATTTGACAACAATTTTACAACAGTATTTGCATTAGCTTTACACAAGTTAACTGGGAATGACATTTTTGTATTAGTCGTGCAGGTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAG-TTGTGTGCAAAATGACATT-CTTTGGTTTTGGCCGAACTCTGATCCTCTATA</genome_strand>
        <mrna_strand>GTTCTGCATTTGCATTTTAATGGGGTTTTGAAGA-TTTTT-TTTTTA------AAAA-AAGATTTGAACTTTAATTAACAAATTTCAAGATTCAGCCATGCAAACTATCAAAGCATCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACTAGTTCATTTCCCAAAATTACCAACTTGTACATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGAGCCAAAATGCAAAATTCAAGGTTTTTACTGCTATTTCCCTAAGTGTTTCAACTGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGGAAGAAAGTGATGGGTATTGATGTGGTTGTGTGGTGGGATAAGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATTCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTTATCCCTCAAGCTCCTAGGGACGGGCCTCCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATACGTCCAAAAGAGCTTGTGCAACTGTTTATCCAAGNTTGTGTGCAAAATGACATTCCTTTGGTTTTGGCCAAACTCTGATCCTCTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730289" ref_strand="+" ref_description="SGN-E730289 [LA23CF09]">
      <seq>atttgcattttaatggagttctgaagattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcatggttggtgctttaatggagctggtgattgtaagttgatccctcaagctcctagggatggccctcaggatcatacgtccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22201" stop="23420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22501" g_stop="23114" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="614" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E730289" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730289" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22501" e_stop="23114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG</genome_strand>
        <mrna_strand>ATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E731255" ref_strand="+" ref_description="SGN-E731255 [LA26CD07]">
      <seq>attttaatggagttctgaagattttttatttttatttttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcatggttggtgctttaatggagctggtgattgtaagttgatccctcaagctcctagggatggccctcaggttcatacgtccaaaagagcttgcgcaactgtttatccaagttgtgtgcaaaatgacattctttggttttggccgaactctgatcctctatacaaggacatatatttgatgaaaaggcctccctatataactgaacttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22207" stop="24836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22507" g_stop="23114" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="609" r_length="609" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.926" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24395" g_stop="24536" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="751" r_length="142" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E731255" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>750</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731255" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22507" e_stop="23114"/>
          <exon e_start="24395" e_stop="24536"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAATGGAGTTCTGAAGATTTTTTATTTTTA-TTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAGGTAATATTGGTTTTCTACTTTTGATTATGGCCTTTATAGACTGTCTTTTTGTTGTAATGATCATATCAAGTGTTTGCAAAACAAAGAAGTTTGGTGTTGATTAACTTGGCTAAAAGTGAGGAGGATAATAGAGATACCCTTTTGTTGCTTGTAGACCCAACTTTTGCACTGTTAACCAGGTATCAACATTTTTAATTCTATAAATGTCAATTCTGTTCAATAAAATGGTGGAGTTTTTGCGTGAGAACATTTAAATATAGCTTCACACTGTGGGATGAGCTGTGTGATCTTGAATACTCGTGTTTGATTTCACTGAATTTGATAATCTTGATTTGCTCAGGAAAAGTCTGAAAGTTATATAGGGGGTGTTAAATGTTGCGAAAATGCTTGTTCATTTGGAGATGCATTGAAAGACAACACTCTACCCATACTAACCTTTTAGCCTTATACGCGACCTCCACTCTTTCCTAGCTAGAGTCATGTCCTTGGTAATATGAAGTTGCGTCATGTTTTGTATACTCACCTCTTCCCAATACTTCTTCGGTCTACCTCTACCTCTCATCGTACTCCCTATAGCCAACATCTATTACACCTCCTCATTAGAGCGTCATCGCACCTTCTCTTCACATGTCCAAACCATTTGAGACTCCATTAAATAATAACTAGACCAAATTATTAATGAAATAGTTATATCAGTATGGTCAAATATCAATTCCAATTCCAGTGCTAGAGCACATAATTTACTGTTGTCATCATTGGTCAAGGTATAGATCAACCATTTGTTTTTTCTTTCTGCTATTCTGAAGGTTTTCCTAGGAAACTTATAGGTAAAGAACTCGAGCATTTTGCATTTTGACATCGTACTTTTCATGCACAGTTCACCATGACATTTATTTGAAGACTTAATCAACTCGGTTCACAATTAAAAGGATAATAACCTTGTGATCATAGCTTACCACCTTTACCTGTGTGACCTTAGTCCTTTATAATGGTGATTGGGACTTCGTAAGAACTGGTGAAGGCTTTCTATCTTTATTGACTGATGAAAGATGATGACAACTCTCATAATTAATAGTCCTGGATATTCTTTTATTTTGTTTTTTCACCCTTTTTCTTGTGAATGTGAATCTTCATTTTCCAAACATGGGAAGTTTGTGTATTGTGTACTTCTCGGAAATGCTTATAGATAAGCACTAGTATTTGACAACAATTTTACAACAGTATTTGCATTAGCTTTACACAAGTTAACTGGGAATGACATTTTTGTATTAGTCGTGCAGGTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGCCTCCCTATATACCTGAACTTGATG</genome_strand>
        <mrna_strand>ATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGCCTCCCTATATAACTGAACTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E314505" ref_strand="+" ref_description="SGN-E314505 [cTOB-1-I5]">
      <seq>gaactagtctcgattttttatttttattttttaaaagaagatttgaacttttattaacaaatttaagattcagccatgcaagctgtcaaagcttcttccttttcaccatttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtatattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaagaattgatcaatggggaagattgcagtgtgtgtatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22226" stop="23348"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22515" g_stop="23048" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="534" r_length="534" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E314505" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22515" e_stop="23048"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCAT</genome_strand>
        <mrna_strand>GAACTAGTCTCGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E475893" ref_strand="+" ref_description="SGN-E475893 [cSTB-42-K14]">
      <seq>gttttgaagattttttttttaaaaaaagatttgaactttaattaacaaatttcaagattcagccatgcaaactatcaaagcatcttccttttcaccatttcacctcaacttgaactcaactagttcatttcccaaaattaccaacttgtacattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagagccaaaatgcaaaattcaaggtttttactgctatttccctaagtgtttcaactgaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatgggaagaaagtgatgggtattgatgtggttgtgtggtgggataagaatgagaaagaatggaaagtaatggatgattcttgtcctcatagatatgctccactttctgaaggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22236" stop="23311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22527" g_stop="23011" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E475893" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E475893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22527" e_stop="23011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTT-AAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAG</genome_strand>
        <mrna_strand>GTTTTGAAGATTTTTTTTTTAAAAAAAGATTTGAACTTTAATTAACAAATTTCAAGATTCAGCCATGCAAACTATCAAAGCATCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACTAGTTCATTTCCCAAAATTACCAACTTGTACATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGAGCCAAAATGCAAAATTCAAGGTTTTTACTGCTATTTCCCTAAGTGTTTCAACTGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGGAAGAAAGTGATGGGTATTGATGTGGTTGTGTGGTGGGATAAGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E471826" ref_strand="+" ref_description="SGN-E471826 [cSTB-25-J16]">
      <seq>tggatcccccgggctgcaggtttttttttaaaaaaagatttgaactttaattaacaaatttcaagattcagccatgcaaactatcaaagcttcttccttttcaccatttcacctcaacttgaactcaactagttcatttcccaaaattaccaacttgtacattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagagccaaaatgcaaaattcaaggtttttactgctatttccccaagtgtttcaactgaatcagaaaccccatttgatgaaaggactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatgggaagaaagtgatgggtattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagtaatggatgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22237" stop="23275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22541" g_stop="22975" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="459" r_length="436" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E471826" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E471826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22541" e_stop="22975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTT-AAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTC</genome_strand>
        <mrna_strand>TTTTTTAAAAAAAGATTTGAACTTTAATTAACAAATTTCAAGATTCAGCCATGCAAACTATCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACTAGTTCATTTCCCAAAATTACCAACTTGTACATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGAGCCAAAATGCAAAATTCAAGGTTTTTACTGCTATTTCCCCAAGTGTTTCAACTGAATCAGAAACCCCATTTGATGAAAGGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGGAAGAAAGTGATGGGTATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E256799" ref_strand="+" ref_description="SGN-E256799 [cLEG-40-G20]">
      <seq>catttcacctcaacttgaactcaaccagttcatttcccaaaactaccaacttgtgtattcaacaaaattatgaaaaccccatttcttgttttccctcaattcagacacaaaatgcaaaattcaaggtttttactgctacttccccaagtgtttcaacagaatcagaaaccccatttgatgaaaagactgaaaatgaaaatcaagaagagaaatttgagtggtatgctgagtggtacccaataatgccaatttgtgatcttgataagaggaggccacatggaaagaaagtgatggggattgatgtggttgtgtggtgggataggaatgagaaagaatggaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="22321" stop="23263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22621" g_stop="22963" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E256799" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22621" e_stop="22963"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGT</genome_strand>
        <mrna_strand>CATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTGTATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E730974" ref_strand="+" ref_description="SGN-E730974 [LA25DB05]">
      <seq>cccttaacttgatgacagttcgttttcgaaaactttcatagtcagagatatatcatatgggtatgagcttctgattgaaaaccttatggacccagctcatgtccaatattcacattatggcattatgaatgttccagtagccccccaaagtgtgaaagctgatcgagaaggaggaagaccacttgacataactatcacgaagttggatgtaaatgtcattactgcaaaccagggacctggacggaacacatttgttccgccttgtgtgtattatagttattttgctttcggaggatctcagggaaaaacaactgctgtatcatctggaactgtacaggaaaaaccttcagctgagaagcagaaaaaagcacttttagttttcatctgtattccggttagtccaggtcatagcagaattatatttgcatctccaagaaactttgccacttgggcagatcgaataattccacgttggatatttcacctgggacaaaatctaattctggattctgatttgtatcttcttcatgtggaggagcgcaagctaaaggaaattggctcttacaattggcataaagcttgctatgtgccaacaaaggcagatgccattgttgttgcttttacaaggtggctaaacaaatatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattgctgccattggaaatgttgctgctttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="24224" stop="27454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24523" g_stop="24582" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24583" i_stop="25034" i_length="452">
            <donor d_prob="0.820" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25035" g_stop="25124" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="150" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25125" i_stop="25218" i_length="94">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25219" g_stop="25405" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="337" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25406" i_stop="25492" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25493" g_stop="25690" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="535" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="26693" g_stop="26880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="536" r_stop="723" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27034" g_stop="27154" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="844" r_length="121" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E730974" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>844</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E730974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24523" e_stop="24582"/>
          <exon e_start="25035" e_stop="25124"/>
          <exon e_start="25219" e_stop="25405"/>
          <exon e_start="25493" e_stop="25690"/>
          <exon e_start="26693" e_stop="26880"/>
          <exon e_start="27034" e_stop="27154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGAACTTGATGACAGTTCGTTTTCGAAAACTTTCATAGTCAGAGATATATCATATGGGTAAGCAGACACAGATATATCCTGCTACCTTTTGTGGAGAAAGCCTTCACAAACTGTTTCACTTTTACTGAACAGAAAAAAACGTTTCTTTCTAAGTTGCTCGGACTCTCCAAAAATGTTGCCAAACCCGTGTCTGATCCTTCAAAAATACATTATTTTTGTAGGACACCTATGGACCTTTTTGAAGAGTTCGAGCAACATAGGTTTTTTTATAGAGGGGAAGAGGGGGTTGGGAAGCCTATAGAATCTAAAAGGCCATCAATAGAGGAAAGAAGGAGAAATTCAAACTTTATAATGTGAACAAGCAACTATGTAAAAATGTAATTTCAATCTTAACATTGTACAAGGATAAATCACTGTGTAATAAATTATGAGAAACTTGTGTGACAAAAACTACCTACTTTTTTATTTAATTTTAGTTATAATCTGTAACAAAATCTGGTAATTTTCAGGTATGAGCTTCTGATTGAAAACCTTATGGACCCAGCTCATGTCCAATATTCACATTATGGCATTATGAATGTTCCAGTAGCCCCCCAAAGATAAGAAGCTTATACTATTTCATACACATTTTATTCTATATTCTTTTCTTTGCATGTGTAAATAACTTCATGACTAACAGAATTGTTTATTCACTGTGAAAGCTGATCGAGAAGGAGGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAGGTAATTCTTGTGCCTTCCATATTATTAGTCTTTTTTCAACATTTATTTGGTACTCTTTGCAGCAGTTTAAATAAATATTTCGTGCAGGAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAGGTAAATCCATTCTTTATTGCATCTTTTCCATTTCTATTGTGTACTTGTTAAATTTAGCTGTCCCTCAGAAGGTTGTTAGCTTAAAAAAAAGAGAAGACTTGTGATTTACACATCCCTGAAGCTTTAGAGATGTTTACTATGCAAGGACCCTTTTCGCGTCCCATGAAAAGGAAACAAGCATATATGTTGAGCTAAATTTGTTGAAACCCCTTCAAGTTACCAGACGGAAAGTTTTAGATTTATGGTCAAACTCAAGAGTGGAGATCCCATAGCTTTTTTCTGCTTCTCAGCTGAAGGTTTTTCCTTCTCCAGAATCTAAACTGGCATAGCTTCTGGAGCTGGAACTATCAATAGGAACTTCTCTATACTGTTACTTTTAGGCAATATCATGATTCGATGCTATTTTCACTACTCTTGTATACTACTCAACAAAGTAACTCTAGACATGTGAACCGCTTTTTTCCGACTCTAATCTTCTAACTTGTCTCAAGTTGTGTTAAAAGCTACTGGAATACTTTTCGATGGAAAGCTGAGGATGTGTGGGATTTATTTCATCAAAAACTTTTAGTTTCTACCAGTCCATTCCCCTTTCTTCACTTTCTCCTTTTCTTCTTGTCTGCGGCTTTACTCTCCCCATCTGTTAATATTTATGTTGTGGTTGTCTTTTTACTCTGTGCTTTACTTTTGACAATCAAATGAAATGAACAACAAAAACAACCATACAGATAGCCAAATAAACACCTTTAGTTGCACGGGATTGTTCCAGCTCTCCAACTTCACGAGGCTTCATCCACCTGTTCAAAATTAGCCTAGGAGTTCAATGCTCATGTTACCACCTTTTACTTCAAACAATAAATCTTGAGCATAGTCTCGCTATTGGAACATATTGCATGACTGTTTGTAAGTTAGATTCCGGTGAAGCGTTGGTGCTTTTAGGTGAAAATTTCCATTTACAATATGACGAGTTGTCCTTTCTCATTCAATTTGTTTTCCATTATGAAGGAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAG</genome_strand>
        <mrna_strand>CCCTTAACTTGATGACAGTTCGTTTTCGAAAACTTTCATAGTCAGAGATATATCATATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGAGCTTCTGATTGAAAACCTTATGGACCCAGCTCATGTCCAATATTCACATTATGGCATTATGAATGTTCCAGTAGCCCCCCAAAG..............................................................................................TGTGAAAGCTGATCGAGAAGGAGGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAG.......................................................................................GAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTACAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGCTGCCATTGGAAATGTTGCTGCTTTAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E701813" ref_strand="+" ref_description="SGN-E701813 [FA17AA11]">
      <seq>gagggaccacttgacataactatcacgaagttggatgtaaatgtcattactgcaaaccagggacctggacggaacacatttgttccgccttgtgtgtattatagttattttgctttcggaggatctcagggaaaaacaactgctgtatcatctggaactgtacaggaaaaaccttcagctgagaagcagaaaaaagcacttttagttttcatctgtattccggttagtccaggtcatagcagaattatatttgcatctccaagaaactttgccacttgggcagatcgaataattccacgttggatatttcacctgggacaaaatctaattctggattctgatttgtatcttcttcatgtggaggagcgcaagctaaaggaaattggctcttacaattggcataaagcttgctatgtgccaacaaaggcagatgccattgttgttgcttttagaaggtggctaaacaaatatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattggtgccattggaattgttgctgctttaaagcagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattactatgcttcgtggcctcgagatggttatctcatttcatatacaaaaatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaagtttgttaaatgatctgttggggtgggcatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="24945" stop="27694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25239" g_stop="25405" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25406" i_stop="25492" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25493" g_stop="25690" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="363" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26693" g_stop="26880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="551" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="27394" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="912" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E701813" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>914</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701813" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25239" e_stop="25405"/>
          <exon e_start="25493" e_stop="25690"/>
          <exon e_start="26693" e_stop="26880"/>
          <exon e_start="27034" e_stop="27394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAGGTAATTCTTGTGCCTTCCATATTATTAGTCTTTTTTCAACATTTATTTGGTACTCTTTGCAGCAGTTTAAATAAATATTTCGTGCAGGAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAGGTAAATCCATTCTTTATTGCATCTTTTCCATTTCTATTGTGTACTTGTTAAATTTAGCTGTCCCTCAGAAGGTTGTTAGCTTAAAAAAAAGAGAAGACTTGTGATTTACACATCCCTGAAGCTTTAGAGATGTTTACTATGCAAGGACCCTTTTCGCGTCCCATGAAAAGGAAACAAGCATATATGTTGAGCTAAATTTGTTGAAACCCCTTCAAGTTACCAGACGGAAAGTTTTAGATTTATGGTCAAACTCAAGAGTGGAGATCCCATAGCTTTTTTCTGCTTCTCAGCTGAAGGTTTTTCCTTCTCCAGAATCTAAACTGGCATAGCTTCTGGAGCTGGAACTATCAATAGGAACTTCTCTATACTGTTACTTTTAGGCAATATCATGATTCGATGCTATTTTCACTACTCTTGTATACTACTCAACAAAGTAACTCTAGACATGTGAACCGCTTTTTTCCGACTCTAATCTTCTAACTTGTCTCAAGTTGTGTTAAAAGCTACTGGAATACTTTTCGATGGAAAGCTGAGGATGTGTGGGATTTATTTCATCAAAAACTTTTAGTTTCTACCAGTCCATTCCCCTTTCTTCACTTTCTCCTTTTCTTCTTGTCTGCGGCTTTACTCTCCCCATCTGTTAATATTTATGTTGTGGTTGTCTTTTTACTCTGTGCTTTACTTTTGACAATCAAATGAAATGAACAACAAAAACAACCATACAGATAGCCAAATAAACACCTTTAGTTGCACGGGATTGTTCCAGCTCTCCAACTTCACGAGGCTTCATCCACCTGTTCAAAATTAGCCTAGGAGTTCAATGCTCATGTTACCACCTTTTACTTCAAACAATAAATCTTGAGCATAGTCTCGCTATTGGAACATATTGCATGACTGTTTGTAAGTTAGATTCCGGTGAAGCGTTGGTGCTTTTAGGTGAAAATTTCCATTTACAATATGACGAGTTGTCCTTTCTCATTCAATTTGTTTTCCATTATGAAGGAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAAATGATCTGTTGGGGTGGGCATGTT</genome_strand>
        <mrna_strand>GAGG--GACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAG.......................................................................................GAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAAATGATCTGTTGGGGTGGGCATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E321429" ref_strand="+" ref_description="SGN-E321429 [cTOB-23-G6]">
      <seq>ggaagaccacttgacataactatcacgaagttggatgtaaatgtcattactgcaaaccagggacctggacggaacacatttgttccgccttgtgtgtattatagttattttgctttcggaggatctcagggaaaaacaactgctgtatcatctggaactgtacaggaaaaaccttcagctgagaagcagaaaaaagcacttttagttttcatctgtattccggttagtccaggtcatagcagaattatatttgcatctccaagaaactttgccacttgggcagatcgaataattccacgttggatatttcacctgggacaaaatctaattctggattctgatttgtatcttcttcatgtggaggagcgcaagctaaaggaaattggctcttacaattggcataaagcttgctatgtgccaacgaaggcagatgccattgttgttgcttttagaaggtggctaaacaaatatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcatgaagtcgtactgcagatcgtctccattggtgccattggaattgntgctgctttaaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="24941" stop="27455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25241" g_stop="25405" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25406" i_stop="25492" i_length="87">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25493" g_stop="25690" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="363" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26693" g_stop="26880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="364" r_stop="551" r_length="188" r_score="0.995"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="27155" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="673" r_length="122" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E321429" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321429" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25241" e_stop="25405"/>
          <exon e_start="25493" e_stop="25690"/>
          <exon e_start="26693" e_stop="26880"/>
          <exon e_start="27034" e_stop="27155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAGGTAATTCTTGTGCCTTCCATATTATTAGTCTTTTTTCAACATTTATTTGGTACTCTTTGCAGCAGTTTAAATAAATATTTCGTGCAGGAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAGGTAAATCCATTCTTTATTGCATCTTTTCCATTTCTATTGTGTACTTGTTAAATTTAGCTGTCCCTCAGAAGGTTGTTAGCTTAAAAAAAAGAGAAGACTTGTGATTTACACATCCCTGAAGCTTTAGAGATGTTTACTATGCAAGGACCCTTTTCGCGTCCCATGAAAAGGAAACAAGCATATATGTTGAGCTAAATTTGTTGAAACCCCTTCAAGTTACCAGACGGAAAGTTTTAGATTTATGGTCAAACTCAAGAGTGGAGATCCCATAGCTTTTTTCTGCTTCTCAGCTGAAGGTTTTTCCTTCTCCAGAATCTAAACTGGCATAGCTTCTGGAGCTGGAACTATCAATAGGAACTTCTCTATACTGTTACTTTTAGGCAATATCATGATTCGATGCTATTTTCACTACTCTTGTATACTACTCAACAAAGTAACTCTAGACATGTGAACCGCTTTTTTCCGACTCTAATCTTCTAACTTGTCTCAAGTTGTGTTAAAAGCTACTGGAATACTTTTCGATGGAAAGCTGAGGATGTGTGGGATTTATTTCATCAAAAACTTTTAGTTTCTACCAGTCCATTCCCCTTTCTTCACTTTCTCCTTTTCTTCTTGTCTGCGGCTTTACTCTCCCCATCTGTTAATATTTATGTTGTGGTTGTCTTTTTACTCTGTGCTTTACTTTTGACAATCAAATGAAATGAACAACAAAAACAACCATACAGATAGCCAAATAAACACCTTTAGTTGCACGGGATTGTTCCAGCTCTCCAACTTCACGAGGCTTCATCCACCTGTTCAAAATTAGCCTAGGAGTTCAATGCTCATGTTACCACCTTTTACTTCAAACAATAAATCTTGAGCATAGTCTCGCTATTGGAACATATTGCATGACTGTTTGTAAGTTAGATTCCGGTGAAGCGTTGGTGCTTTTAGGTGAAAATTTCCATTTACAATATGACGAGTTGTCCTTTCTCATTCAATTTGTTTTCCATTATGAAGGAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGC</genome_strand>
        <mrna_strand>GGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAG.......................................................................................GAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACGAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCATGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGNTGCTGCTTTAAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E340164" ref_strand="+" ref_description="SGN-E340164 [cTOF-2-M7]">
      <seq>aaaaacaactgctgtatcatctggtaactgtacaggaaaaaccttcagctgagaagcagaaaaaagcacttttagttttcatctgtattccggttagtccaggtcatagcagaattatatttgcatctccaagaaactttgccacttgggcagatcgaataattccacgttggatatttcacctgggacaaaatctaattctggattctgatttgtatcttcttcatgtggaggagcgcaagctaaaggaaattggctcttacaattggcataaagcttgctatgtgccaacaaaggcagatgccattgttgttgcttttagaaggtggctaaacaaatatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgcactgcagatcgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="25072" stop="27418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25372" g_stop="25405" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.941"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25406" i_stop="25492" i_length="87">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.963" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25493" g_stop="25690" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="233" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="26693" g_stop="26880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="421" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27034" g_stop="27118" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="506" r_length="85" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E340164" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340164" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25372" e_stop="25405"/>
          <exon e_start="25493" e_stop="25690"/>
          <exon e_start="26693" e_stop="26880"/>
          <exon e_start="27034" e_stop="27118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACAACTGCTGTATCATCTGG-AACTGTACAGGTAATTCTTGTGCCTTCCATATTATTAGTCTTTTTTCAACATTTATTTGGTACTCTTTGCAGCAGTTTAAATAAATATTTCGTGCAGGAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAGGTAAATCCATTCTTTATTGCATCTTTTCCATTTCTATTGTGTACTTGTTAAATTTAGCTGTCCCTCAGAAGGTTGTTAGCTTAAAAAAAAGAGAAGACTTGTGATTTACACATCCCTGAAGCTTTAGAGATGTTTACTATGCAAGGACCCTTTTCGCGTCCCATGAAAAGGAAACAAGCATATATGTTGAGCTAAATTTGTTGAAACCCCTTCAAGTTACCAGACGGAAAGTTTTAGATTTATGGTCAAACTCAAGAGTGGAGATCCCATAGCTTTTTTCTGCTTCTCAGCTGAAGGTTTTTCCTTCTCCAGAATCTAAACTGGCATAGCTTCTGGAGCTGGAACTATCAATAGGAACTTCTCTATACTGTTACTTTTAGGCAATATCATGATTCGATGCTATTTTCACTACTCTTGTATACTACTCAACAAAGTAACTCTAGACATGTGAACCGCTTTTTTCCGACTCTAATCTTCTAACTTGTCTCAAGTTGTGTTAAAAGCTACTGGAATACTTTTCGATGGAAAGCTGAGGATGTGTGGGATTTATTTCATCAAAAACTTTTAGTTTCTACCAGTCCATTCCCCTTTCTTCACTTTCTCCTTTTCTTCTTGTCTGCGGCTTTACTCTCCCCATCTGTTAATATTTATGTTGTGGTTGTCTTTTTACTCTGTGCTTTACTTTTGACAATCAAATGAAATGAACAACAAAAACAACCATACAGATAGCCAAATAAACACCTTTAGTTGCACGGGATTGTTCCAGCTCTCCAACTTCACGAGGCTTCATCCACCTGTTCAAAATTAGCCTAGGAGTTCAATGCTCATGTTACCACCTTTTACTTCAAACAATAAATCTTGAGCATAGTCTCGCTATTGGAACATATTGCATGACTGTTTGTAAGTTAGATTCCGGTGAAGCGTTGGTGCTTTTAGGTGAAAATTTCCATTTACAATATGACGAGTTGTCCTTTCTCATTCAATTTGTTTTCCATTATGAAGGAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTC</genome_strand>
        <mrna_strand>AAAAACAACTGCTGTATCATCTGGTAACTGTACAG.......................................................................................GAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGCACTGCAGATCGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E735086" ref_strand="+" ref_description="SGN-E735086 [LB14BF02]">
      <seq>cgctgggacaaaatctaattctggattctgatttgtatcttcttcatgtggaggagcgcaagctaaaggaaattggctcttacaattggcataaagcttgctatgtgccaacaaaggcagatgccattgttgttgcttttagaaggtggctaaacaaatatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattggtgccattggaattgttgctgctttaaagcagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattactatgcttcgtggcctcgagatggttatctcatttcatatacaaaaatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaagtttgttaaaaaaacaaaaaaaaaaaaaaaaaacccccgggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="25340" stop="27676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25638" g_stop="25690" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.954" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26693" g_stop="26880" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="241" r_length="188" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27034" g_stop="27370" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="578" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="579" polyA_stop="602"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E735086" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.940" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735086" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25638" e_stop="25690"/>
          <exon e_start="26693" e_stop="26880"/>
          <exon e_start="27034" e_stop="27370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAGGTAAATCCATTCTTTATTGCATCTTTTCCATTTCTATTGTGTACTTGTTAAATTTAGCTGTCCCTCAGAAGGTTGTTAGCTTAAAAAAAAGAGAAGACTTGTGATTTACACATCCCTGAAGCTTTAGAGATGTTTACTATGCAAGGACCCTTTTCGCGTCCCATGAAAAGGAAACAAGCATATATGTTGAGCTAAATTTGTTGAAACCCCTTCAAGTTACCAGACGGAAAGTTTTAGATTTATGGTCAAACTCAAGAGTGGAGATCCCATAGCTTTTTTCTGCTTCTCAGCTGAAGGTTTTTCCTTCTCCAGAATCTAAACTGGCATAGCTTCTGGAGCTGGAACTATCAATAGGAACTTCTCTATACTGTTACTTTTAGGCAATATCATGATTCGATGCTATTTTCACTACTCTTGTATACTACTCAACAAAGTAACTCTAGACATGTGAACCGCTTTTTTCCGACTCTAATCTTCTAACTTGTCTCAAGTTGTGTTAAAAGCTACTGGAATACTTTTCGATGGAAAGCTGAGGATGTGTGGGATTTATTTCATCAAAAACTTTTAGTTTCTACCAGTCCATTCCCCTTTCTTCACTTTCTCCTTTTCTTCTTGTCTGCGGCTTTACTCTCCCCATCTGTTAATATTTATGTTGTGGTTGTCTTTTTACTCTGTGCTTTACTTTTGACAATCAAATGAAATGAACAACAAAAACAACCATACAGATAGCCAAATAAACACCTTTAGTTGCACGGGATTGTTCCAGCTCTCCAACTTCACGAGGCTTCATCCACCTGTTCAAAATTAGCCTAGGAGTTCAATGCTCATGTTACCACCTTTTACTTCAAACAATAAATCTTGAGCATAGTCTCGCTATTGGAACATATTGCATGACTGTTTGTAAGTTAGATTCCGGTGAAGCGTTGGTGCTTTTAGGTGAAAATTTCCATTTACAATATGACGAGTTGTCCTTTCTCATTCAATTTGTTTTCCATTATGAAGGAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</genome_strand>
        <mrna_strand>CGCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E202882" ref_strand="-" ref_description="SGN-E202882 [cLEB-1-H3]">
      <seq>aaaggaaattggctcttacaattggcataaagcttgctatgtgccaacaaaggcagatgccattgttgttgcttttagaaggtggctaaacaaatatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattggtgccattggaattgttgctgctttaaagcagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattactatgcttcgtggcctcgagatggttatctcatttcatatacaaaaatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaagtttgttaaaaaaaaaaaaaaaaaaaactcgactcgtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="26404" stop="27671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26704" g_stop="26880" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="27370" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="514" r_length="337" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="515" polyA_stop="533"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E202882" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.945" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202882" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26704" e_stop="26880"/>
          <exon e_start="27034" e_stop="27370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</genome_strand>
        <mrna_strand>AAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E221457" ref_strand="+" ref_description="SGN-E221457 [cLEL-10-J4](-)">
      <seq>attgttgttgcttttagaaggtggctaaacaaattatgcaggtggtcaagttgattggcgtggaaagtacaatggagacctccccgccaactcctnncaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattggtgccattggaattgttgctgctttaaagcagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattactatgcttcgtggcctcgagatggttatctcatttcatatacaaaaatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="26465" stop="27661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26765" g_stop="26880" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="119" r_length="119" r_score="0.940"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="27361" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="447" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="448" polyA_stop="463"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E221457" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26765" e_stop="26880"/>
          <exon e_start="27034" e_stop="27361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAA-TATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCT-CCCGCCAACTCCT-CCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAA</genome_strand>
        <mrna_strand>ATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATTATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCCGCCAACTCCTNNCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E222025" ref_strand="+" ref_description="SGN-E222025 [cLEL-10-J4](-)">
      <seq>caagttgattggcgtggaaagtacaatggagacctcccgccaactcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattggtgccattggaattgttgctgctttaaagcagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattactatgcttcgtggcctcgagatggttatctcatttcatatacaaaaatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="26510" stop="27661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26810" g_stop="26880" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="27361" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="399" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="400" polyA_stop="415"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E222025" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26810" e_stop="26880"/>
          <exon e_start="27034" e_stop="27361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAA</genome_strand>
        <mrna_strand>CAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E277357" ref_strand="-" ref_description="SGN-E277357 [cLER-3-O3]">
      <seq>actcctccaagggagcagctgctggacaggtattggactcatacagtgagttgcacaagttgcaatctcgcatataaaagtctcaatgctcttgaagtcgtactgcagatcgtctccattggtgccattggaattgttgctgctttaaagcagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattaatatgcttcgtggcctcgagatggttatctcatttcatatacaataatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaagtttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="26552" stop="27668"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26852" g_stop="26880" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.980" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27034" g_stop="27368" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="364" r_length="335" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E277357" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277357" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="26852" e_stop="26880"/>
          <exon e_start="27034" e_stop="27368"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTCCAAGGGAGCAGCTGCTGGACAGGTTCGTACATTGATTCCCACACTTCTAATATAGATTCTTCATTAATTCTAGTGTAAACAAGTTTTGGACCTGTAAGGATAGACTTTCGAGAACCTTTTAGAGACGAAGACGTTGGGTTAAAAGTGTAAATGATATGTTTATACTTCCTTTCAGGTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTT</genome_strand>
        <mrna_strand>ACTCCTCCAAGGGAGCAGCTGCTGGACAG.........................................................................................................................................................GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTAATATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAATAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E229331" ref_strand="+" ref_description="SGN-E229331 [cLEL-4-D10](-)">
      <seq>ctcgcatataaaagtctcaatgctcttaaagtcgtactgcagatcgtctccattggtgccattgaaattgttgctgctttaaaacagggcacattgtctgcggtgacaaggtattccttggtcaccgttgcattactatgcttcgtggcctcgagatggttatctcatttcatatacaaaaatttccatttccacgattacgaccatgcctttcgttaacacttgagtactttcatatgactgaacattcactgtataaacatattccttgtagttgaaatttgcagaaaagtttgttaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="26771" stop="27671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27071" g_stop="27370" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="300" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="301" polyA_stop="317"/>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E229331" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.946" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27071" e_stop="27370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</genome_strand>
        <mrna_strand>CTCGCATATAAAAGTCTCAATGCTCTTAAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGAAATTGTTGCTGCTTTAAAACAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E551179" ref_strand="+" ref_description="SGN-E551179 [TUS-55-K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagccactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="73805" stop="67819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68827" g_stop="68568" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68567" i_stop="68411" i_length="157">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68410" g_stop="68130" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="545" r_length="287" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E551179" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68827" e_stop="68568"/>
          <exon e_start="68410" e_stop="68130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATCCACAACAAGAAAGTACACGAAGAAAAAATGTGTTTATTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAT-ATATATTCTGAAAGGTGGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCAGGAATTTTTAAATATAACGAAATTTAAAACGGGTCACGCGCGCATATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGTCAAAGCC-AA---AGCGAGCGACGACGACGAC-GCGAG-GGGGGGTCCCTCTTTCCAACTCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTACTAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTTCCATCAATTCTTGCTACATACCCAAC</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA---GGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAA.............................................................................................................................................................AATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGAAGCGAGCGAGCGACGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E689001" ref_strand="+" ref_description="SGN-E689001 [t3_tus_55_K22]">
      <seq>aaactctactgtcagcgaatcaatccacagcaggaaagtacacgaagaaaaaatgtgtttattaataagtaggaatatcagaaaattcgttagtaaatattctgaagactgaatggtatttataaacaagaataatatattctgaaaggcaaccctttcagaattgacacaaccattaatgaaaggttgcaaactttcaaatggtattgactgttcctgaaagttgcaacctttcagaacagtggcgggaatttttaaaattatctctcgatcgatcatttgccaaagccgaagccgaagccgaagcgagcgagcgacgaccacgacggcgcgaggggggttcctctttccaacccttttaataattaataggagtgtttatttatttaaactctcttattttcatttccattaacgatgagggactattgccttttttattaaagcattagaggacttttcaagttcccaacctttcaagttctaaacttttcaaattcctctccttccctctatttcccatcaattcttgctacatacccaacagtaattgtttaatctttgttaagtcactttttgtgttgaaattatttactttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="73805" stop="67819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68827" g_stop="68568" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68567" i_stop="68411" i_length="157">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.76"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68410" g_stop="68130" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="545" r_length="287" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E689001" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="0.903" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E689001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68827" e_stop="68568"/>
          <exon e_start="68410" e_stop="68130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCTACTGTCAGCGAATCAATCCACAACAAGAAAGTACACGAAGAAAAAATGTGTTTATTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAAT-ATATATTCTGAAAGGTGGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCAGGAATTTTTAAATATAACGAAATTTAAAACGGGTCACGCGCGCATATCCGAGTCGGGTCGGGTTAACTAAAAAGTTGAAAACATTTCGGTTAATTTCTGTTATCAACTGATTAATTGAAAATAATTTTTGGCCATTTAATTAATTAATTAAAATAAATTTGTCCAAAAAATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGTCAAAGCC-AA---AGCGAGCGACGACGACGAC-GCGAG-GGGGGGTCCCTCTTTCCAACTCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTACTAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTTCCATCAATTCTTGCTACATACCCAAC</genome_strand>
        <mrna_strand>AAACTCTACTGTCAGCGAATCAATCCACAGCAGGAAAGTACACGAAGAAAAAATGTGTTTATTAATAAGTAGGAATATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAAACAAGAATAATATATTCTGAAA---GGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCGGGAATTTTTAA.............................................................................................................................................................AATTATCTCTCGATCGATCATTTGCCAAAGCCGAAGCCGAAGCCGAAGCGAGCGAGCGACGACCACGACGGCGCGAGGGGGGTTCCTCTTTCCAACCCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCTTATTTTCATTTCCATTAACGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTCCCAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTCCCATCAATTCTTGCTACATACCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="78178" stop="77279"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77878" g_stop="77579" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77878" e_stop="77579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTC-GCAAGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="78604" stop="77519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78304" g_stop="77819" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78304" e_stop="77819"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCAGCCACCCCCGAATCACCACCGCTCGTGTCACCCCCCAATACTCATCCCATGTTAACCCGTTGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACGCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGACACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTTCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E212480" ref_strand="+" ref_description="SGN-E212480 [cLEC-74-E23]">
      <seq>ttatcacaaaccaaaatgggaggtggtggtaatatgactaaaattgaacaaaagattaaagtaccactatccaagcccccttttatacttagtgaactcaagaaggctattcctcctcattgctttcaacgatctctcgttcgctccttttcctacgttgttcgggatatcacactagtgtttgtattagggtatatcgctgcgaattacatctatgtccttccatctccatataattacctaggatggcctatttattggttttccctaggaagtgttttcacagcaatgtgggtcattgctcatgaatgtggccatcatggctttagtaattaccaatggatagatgacacggttggttttatcttctatacctcaatttgtgtcccttacttttcttggaaatacagtcatcgtcgtcatcactccaatgcaggttcgcttgaatatgatgaagtctacgtacctaggcttaaatccgaattacgttggttctctaaatatttcgacaatctaccaggacgaataatcgcgttcaccaccaccctcacggttggttggccttcttacatggccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="83750" stop="85072"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84050" g_stop="84772" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="723" r_length="723" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E212480" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E212480" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84050" e_stop="84772"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATCACAAACCAAAATGGGAGGTGGTGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATCCAAGCCCCCTTTTATACTTAGTGAACTCAAGAAGGCTATTCCTCCTCATTGCTTTCAACGATCTCTCGTTCGCTCCTTTTCCTACGTTGTTCGGGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCTCCATATAATTACCTAGGATGGCCTATTTATTGGTTTTCCCTAGGAAGTGTTTTCACAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATG</genome_strand>
        <mrna_strand>TTATCACAAACCAAAATGGGAGGTGGTGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATCCAAGCCCCCTTTTATACTTAGTGAACTCAAGAAGGCTATTCCTCCTCATTGCTTTCAACGATCTCTCGTTCGCTCCTTTTCCTACGTTGTTCGGGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCTCCATATAATTACCTAGGATGGCCTATTTATTGGTTTTCCCTAGGAAGTGTTTTCACAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E697288" ref_strand="+" ref_description="SGN-E697288 [FA02AD11]">
      <seq>cgtttttccagcaatgtgggtcattgctcatgaatgtggccatcatggctttagtaattaccaatggatagatgacacggttggttttatcttctatacctcaatttgtgtcccttacttttcttggaaatacagtcatcgtcgtcatcactccaatgcaggttcgcttgaatatgatgaagtctacgtacctaggcttaaatccgaattacgttggttctctaaatatttcgacaatctaccaggacgaataatcgcgttcaccaccaccctcacggttggttggccttcttacatggccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattggctaagaggagctttagctactgtagatagagactttggtccactaaataatatatgtcataatgttacaaatactcatgttttgcatcatttattcccaaccataccacattatcatgcagtggaggcaacaaaagctatcaagcccatacttggagattactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84024" stop="85372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84325" g_stop="85072" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="748" r_length="748" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E697288" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E697288" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84325" e_stop="85072"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTTCACAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTAT</genome_strand>
        <mrna_strand>CGTTTTTCCAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCCCAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCCATACTTGGAGATTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201642" ref_strand="+" ref_description="SGN-E201642 [cLEC-11-F19]">
      <seq>cattgctcatgaatgtggccatcatggctttagtaattaccaatggatagatgacacggttggttttatcttctatacctcaatttgtgtcccttacttttcttggaaatacagtcatcgtcgtcatcactccaatgcaggttcgcttgaatatgatgaagtctacgtacctaggcttaaatccgaattacgttggttctctaaatatttcgacaatctaccaggacgaataatcgcgttcaccaccaccctcacggttggttggccttcttacatggccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84046" stop="85206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84346" g_stop="84906" g_length="561"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="561" r_length="561" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E201642" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84346" e_stop="84906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTG</genome_strand>
        <mrna_strand>CATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374644" ref_strand="+" ref_description="SGN-E374644 [TUS-15-J5]">
      <seq>gtgtcccttacttttcttggaaatacagtcatcgtcgtcatcactccaatgcaggttcgcttgaatatgatgaagtctacgtacctaggcttaaatccgaattacgttggttctctaaatatttcgacaatctaccaggacgaataatcgcgttcaccaccaccctcacggttggttggccttcttacatggccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattggctaagaggagctttagctactgtagatagagactttggtccactaaataatatatgtcataatgttacaaatactcatgttttgcatcatttattcacaaccataccacattatcatgcagtggaggcaacaaaagctatcaagccaatacttggagattactataattttgatagtacaccagtttataaagcattatggaagaatataaatgagtgtatctatgtggagaaaaatgaagaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84132" stop="85455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84432" g_stop="85155" g_length="724"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="724" r_length="724" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E374644" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84432" e_stop="85155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCA</genome_strand>
        <mrna_strand>GTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCATTATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204838" ref_strand="+" ref_description="SGN-E204838 [cLEC-14-D11]">
      <seq>gtgtcccttacttttcttggaaatacagtcatcgtcgtcatcactccaatgcaggttcgcttgaatatgatgaagtctacgtacctaggcttaaatccgaattacgttggttctctaaatatttcgacaatctaccaggacgaataatcgcgttcaccaccaccctcacggttggttggccttcttacatggccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84132" stop="85206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84432" g_stop="84906" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E204838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84432" e_stop="84906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTG</genome_strand>
        <mrna_strand>GTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E204442" ref_strand="+" ref_description="SGN-E204442 [cLEC-13-N14]">
      <seq>cgggctgcaggattcggcacgtatatgaagtctacgtacctaggcttaaatgcggattacgttggttctctaaatatttcgacaatctaccaggacgaataatcgcgttcaccaccaccctcacggttggttggccttcttacatggccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagacccgcattatgattcttcagaatgggattggctaaaaggagctttagctactgtagatagagactttggtcccctaaataatatatgtcataat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84197" stop="85270"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84501" g_stop="84970" g_length="470"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="494" r_length="470" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E204442" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>470</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204442" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84501" e_stop="84970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAAT</genome_strand>
        <mrna_strand>ATGAAGTCTACGTACCTAGGCTTAAATGCGGATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGACCCGCATTATGATTCTTCAGAATGGGATTGGCTAAAAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCCCTAAATAATATATGTCATAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E374643" ref_strand="+" ref_description="SGN-E374643 [TUS-15-J5](-)">
      <seq>gccatcaatgcctccggtagaccttatgatcgttttgcaagtcactataatccatatagtccaatgtataacaatcgtgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattggctaagaggagctttagctactgtagatagagactttggtccactaaataatatatgtcataatgttacaaatactcatgttttgcatcatttattcacaaccataccacattatcatgcagtggaggcaacaaaagctatcaagccaatacttggagattactataattttgatagtacaccagtttataaagcaatatggaagaatataaatgagtgtatctatgtggagaaaaatgaagaaactcaagatagaggtgttttttggtataaaaacaaactttaaaagatgaatgtaagcatttaattattacttgtaatttggctaaatgttaagccttaataatttgttatggtttaattaaggtttacttatagcttgtaataattggattgttgcatttagaaatctccctaataaatcataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84323" stop="85634"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84623" g_stop="85341" g_length="719"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="719" r_length="719" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E374643" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84623" e_stop="85341"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAATCACTCT</genome_strand>
        <mrna_strand>GCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTTTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352736" ref_strand="+" ref_description="SGN-E352736 [cTOS-11-B2]">
      <seq>tgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattggctaagaggagctttagctactgtagatagagactttggtccactaaataatatatgtcataatgttacaaatactcatgttttgcatcatttattcacaaccataccacattatcatgcagtggaggcaacaaaagctatcaagccaatacttggagattactataattttgatagtacaccagtttataaagcaatatggaagaatataaatgagtgtatctatgtggagaaaaatgaagaaactcaagatagaggtgttttttggtataaaaacaaactctaaaagatgaatgtaagcatttaattattacttgtaatttggctaaatgttaagccttaataatttgttatggtttaattaaggtttacttatagcttgtaataattggattgttgcatttagaaatctccctaataaatcatatcactctgtccgtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84400" stop="85648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84700" g_stop="85345" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E352736" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84700" e_stop="85345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAATCACTCTGTCC</genome_strand>
        <mrna_strand>TGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCAT-ATCACTCTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357352" ref_strand="+" ref_description="SGN-E357352 [cTOS-23-B1]">
      <seq>tgagaggctacttatctacttctcagacttaggtctaattgcatttatttatatgtggtatcgtatcgcgatggtaaaagggctagcttgggttgtatgtatgtatgtagcaccccttgaaattatgaacatactagtagtggtactaacttttttgaaccacacacatgcattagtcccacattatgattcttcagaatgggattggctaagaggagctttagctactgtagatagagactttggtccactaaataatatatgtcataatgttacaaatactcatgttttgcatcatttattcacaaccataccacattatcatgcagtggaggcaacaaaagctatcaagccaatacttggagattactataattttgatagtacaccagtttataaagcaatatggaagaatataaatgagtgtatctatgtggagaaaaatgaagaaactcaagatagaggtgttttttggtataaaaacaaactctaaaagatgaatgtaagcatttaattattacttgtaatttggctaaatgttaagccttaataatttgttatggtttaattaaggtttacttatagcttgtaataattggattgttgcatttagaaatctccctaataaatcataatcactctgtcccgtaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="84400" stop="85648"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="84700" g_stop="85345" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="646" r_length="646" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E357352" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357352" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="84700" e_stop="85345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAATCACTCTGTCC</genome_strand>
        <mrna_strand>TGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAATCACTCTGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E305420" ref_strand="+" ref_description="SGN-E305420 [cLEX-15-E10]">
      <seq>tggtaatatgactaaaattgaacaaaagattaaagtaccactattaaagcccccttttaaacttagtgaactcaagaaggctattcctcctcactgctttcaacgatctctcgttcgctccttctcctacgttgttcgtgatatcacactagtgtttgtattagggtatatcgctgcgaattacatctatgtccttccatccccatattattacctagcatggcctatttattggtttgctctaggtagtgctttcacaggaatatgggtccttgctcatgaatgtggccaccatggctttagtaattatcaatggatagatgacacggttggttttatcttatatacctcgatttgtgtgccttacttttcttggaaacgtactcatcatcgtcatcactccaatactggttcccttgaatatgatgaagtctatgtacctaggcttaaatccgaactacaatggttctccaaatatttcaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="92616" stop="93704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92916" g_stop="93404" g_length="489"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="489" r_length="489" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E305420" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E305420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92916" e_stop="93404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATTAAAGCCCCCTTTTAAACTTAGTGAACTCAAGAAGGCTATTCCTCCTCACTGCTTTCAACGATCTCTCGTTCGCTCCTTCTCCTACGTTGTTCGTGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCCCCATATTATTACCTAGCATGGCCTATTTATTGGTTTGCTCTAGGTAGTGCTTTCACAGGAATATGGGTCCTTGCTCATGAATGTGGCCACCATGGCTTTAGTAATTATCAATGGATAGATGACACGGTTGGTTTTATCTTATATACCTCGATTTGTGTGCCTTACTTTTCTTGGAAACGTACTCATCATCGTCATCACTCCAATACTGGTTCCCTTGAATATGATGAAGTCTATGTACCTAGGCTTAAATCCGAACTACAATGGTTCTCCAAATATTTCAACAATCT</genome_strand>
        <mrna_strand>TGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATTAAAGCCCCCTTTTAAACTTAGTGAACTCAAGAAGGCTATTCCTCCTCACTGCTTTCAACGATCTCTCGTTCGCTCCTTCTCCTACGTTGTTCGTGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCCCCATATTATTACCTAGCATGGCCTATTTATTGGTTTGCTCTAGGTAGTGCTTTCACAGGAATATGGGTCCTTGCTCATGAATGTGGCCACCATGGCTTTAGTAATTATCAATGGATAGATGACACGGTTGGTTTTATCTTATATACCTCGATTTGTGTGCCTTACTTTTCTTGGAAACGTACTCATCATCGTCATCACTCCAATACTGGTTCCCTTGAATATGATGAAGTCTATGTACCTAGGCTTAAATCCGAACTACAATGGTTCTCCAAATATTTCAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E306525" ref_strand="+" ref_description="SGN-E306525 [cLEX-13-F15]">
      <seq>atttagccaaattacaagcaataataaaatgcttacgttcatcttttagagtttgtttttataccaaaaaacacctctatcttgagtttcttcctttttttccacatagatgcactcatttatattcttccatatcgctttataaactggtgtactatcaaaattatagtaatctccaagtattggcttgatagcttttgttgcctccattgcatgataatgtggtatggttgtgaataaatgatgcaaaacatgagtatctgtaacgttatgaaaaacgttagttagtataccaaagtctctatctacagtagctagagttcctcttagccaatcccattctgaagaatcataatgtgggactaatgcatgtgtgtggttcaaataagttagtaccactactagtatgctcattatttgaaggggcgctacatacatgcatacaacccaagctagcccttttaccatcgcgattcgataccacatataaatcattgaaattagacccaagtctgacaagtatattagtagcctctcactatcattatacattggactatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="94377" stop="93216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94077" g_stop="93516" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E306525" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E306525" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94077" e_stop="93516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAGCCAAATTACAAGCAATAATAAAATGCTTACGTTCATCTTTTAGAGTTTGTTTTTATACCAAAAAACACCTCTATCTTGAGTTTCTTCCTTTTTTTCCACATAGATGCACTCATTTATATTCTTCCATATCGCTTTATAAACTGGTGTACTATCAAAATTATAGTAATCTCCAAGTATTGGCTTGATAGCTTTTGTTGCCTCCATTGCATGATAATGTGGTATGGTTGTGAATAAATGATGCAAAACATGAGTATCTGTAACGTTATGAAAAACGTTAGTTAGTATACCAAAGTCTCTATCTACAGTAGCTAGAGTTCCTCTTAGCCAATCCCATTCTGAAGAATCATAATGTGGGACTAATGCATGTGTGTGGTTCAAATAAGTTAGTACCACTACTAGTATGCTCATTATTTGAAGGGGCGCTACATACATGCATACAACCCAAGCTAGCCCTTTTACCATCGCGATTCGATACCACATATAAATCATTGAAATTAGACCCAAGTCTGACAAGTATATTAGTAGCCTCTCACTATCATTATACATTGGACTATAT</genome_strand>
        <mrna_strand>ATTTAGCCAAATTACAAGCAATAATAAAATGCTTACGTTCATCTTTTAGAGTTTGTTTTTATACCAAAAAACACCTCTATCTTGAGTTTCTTCCTTTTTTTCCACATAGATGCACTCATTTATATTCTTCCATATCGCTTTATAAACTGGTGTACTATCAAAATTATAGTAATCTCCAAGTATTGGCTTGATAGCTTTTGTTGCCTCCATTGCATGATAATGTGGTATGGTTGTGAATAAATGATGCAAAACATGAGTATCTGTAACGTTATGAAAAACGTTAGTTAGTATACCAAAGTCTCTATCTACAGTAGCTAGAGTTCCTCTTAGCCAATCCCATTCTGAAGAATCATAATGTGGGACTAATGCATGTGTGTGGTTCAAATAAGTTAGTACCACTACTAGTATGCTCATTATTTGAAGGGGCGCTACATACATGCATACAACCCAAGCTAGCCCTTTTACCATCGCGATTCGATACCACATATAAATCATTGAAATTAGACCCAAGTCTGACAAGTATATTAGTAGCCTCTCACTATCATTATACATTGGACTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E563195" ref_strand="+" ref_description="SGN-E563195 [1555]">
      <seq>agattcaatattggccaaaacaccagatcagaaactggccataaaagttaatatggaagatcaaactaccctggnaagatctcatggtttgcttggttagtgagcaaaagggcctgcttaacacatgaagtgcttcaaaagaaaggcagacaaatatgctcaagatgctttatgtgtgatcaagatgcagaagttaatagtcccttattccttccttggcaaagtagctacaagcttgtggaacatgtttcttggtcttcttggtgttttctgggtagttccaaagtccactaaagatttgctctactgctggaaggagataggaagaagggagtctaactaagattggtgggagttaatcccagcctgcatttggtggtccctttggaaagaaagaaagggaagatgatttgtggataagagaagcaacacccagaaaattagaatgaattgtctcaagtcttttgtacttttggtgtaaacaagatatggtgggggatatagaacttttttgctggctttataagtaatttgtaatttcccataggggtagttggatatgctctaaatgagatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="99230" stop="98124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="98930" g_stop="98363" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E563195" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E563195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="98930" e_stop="98363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACAATATTGGCCAAAACACCAGATCAGAAACTGGCTATGGAAGTTAATATGGAAGATAAAAATACCCTTG-AAGATCTCATGTTTTGCTTGGTTAGTGAGCAAAAGGGCCTGCTTAACACATGAAGTGTTTCAAATGGAAGGCAGACGAATATGCTCAAGATGATTTATGTGTGATCAAGATGCAGAAGTTAATAGTCACTTTTTCCTTCATT-GCAAAGTAGATACAAGCTTGTGGAACATGTTTCTTGGTCTTCTTGGTGTTTCCTGGGTAGTTCCAAAGTCCACTAAGGATTTGCTCTACTGGTGGAAGGAGATAGGAAGAAGGGGGTCTAATGAAGATTGGTGGGAGTTAATCCCAGCCTGCATTTGGTGGTCCCTTTGGAAAGAAAGGAAGGGAAGATG-CTTGTGGATAAGAGAAACAACACCCAGAAAATTAGAATGAATTGTCT-TAGTCTTTTGTACTTTTGGTGTAAACAAGATATGGTGTGGGATATAGAAC--TTCTGCTGACTTTATAGGTAATTTGTAATCTCCCATA-GGATAGTTTGATATGCTC-CAATGAGATT</genome_strand>
        <mrna_strand>AGATTCAATATTGGCCAAAACACCAGATCAGAAACTGGCCATAAAAGTTAATATGGAAGATCAAACTACCCTGGNAAGATCTCATGGTTTGCTTGGTTAGTGAGCAAAAGGGCCTGCTTAACACATGAAGTGCTTCAAAAGAAAGGCAGACAAATATGCTCAAGATGCTTTATGTGTGATCAAGATGCAGAAGTTAATAGTCCCTTATTCCTTCCTTGGCAAAGTAGCTACAAGCTTGTGGAACATGTTTCTTGGTCTTCTTGGTGTTTTCTGGGTAGTTCCAAAGTCCACTAAAGATTTGCTCTACTGCTGGAAGGAGATAGGAAGAAGGGAGTCTAACTAAGATTGGTGGGAGTTAATCCCAGCCTGCATTTGGTGGTCCCTTTGGAAAGAAAGAAAGGGAAGATGATTTGTGGATAAGAGAAGCAACACCCAGAAAATTAGAATGAATTGTCTCAAGTCTTTTGTACTTTTGGTGTAAACAAGATATGGTGGGGGATATAGAACTTTTTTGCTGGCTTTATAAGTAATTTGTAATTTCCCATAGGGGTAGTTGGATATGCTCTAAATGAGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E276338" ref_strand="+" ref_description="SGN-E276338 [cLEN-21-H18]">
      <seq>atgcttatcttttagttctttaggcagagagaaggaaaacattagaaaagatttggagaaaacaaaagcaaagttgagagacacagaatccaaacttaggaatgccatccaggagaagacaaaacttgagggtgaaagagcttgtgctgagagggaaattaaacgcttaaatggccagagggctattcttgagcgtgacatcaataaacgagactcaaatattggaagaaggcgtgattcagtcgttgataggagctctaatgtgctcgactccaaaagatccaagaattcctctgtttgtgtcgaacatgttgtgcaggaggagtatcggaaattggaagtgctggcttttgagatggagacaacaattgcttctttggaagaggaattaacaatttctcatgcagaaaatgaagaagccaattctagagcagaaaatttagcatgtgaattgcaagctttatctgacgagttgaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="106613" stop="104163"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106313" g_stop="106184" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106183" i_stop="106100" i_length="84">
            <donor d_prob="0.130" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="106099" g_stop="105911" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="319" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="105910" i_stop="104625" i_length="1286">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="104624" g_stop="104463" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="481" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E276338" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106313" e_stop="106184"/>
          <exon e_start="106099" e_stop="105911"/>
          <exon e_start="104624" e_stop="104463"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTTATCTTCTAGTTCTTTAGGCAGAGAGAAGGAAAACATTAGAAAAGATTTGGAGAAAACAAAAGCAAAGTTGAGAGACACAGAATCCAAACTTAGGAATGCCATCCAGGAGAAGACAAAACTTGAGGTTTCATTCGAATTTGTTTTGAAGGTTGATTTTCTTGTGCCGTCTAAGGCATTTCTATCTTTTCTGACGGTATCACGTTGTTAGGGTGAAAGAGCTTGTGCTGAGAGGGAAATTAAACGCTTAAATGGCCAGAGGGCTATTCTTGAGCGTGACATCAATAAACGAGACTCAAATATTGGAAGAAGGCGTGATTCAGTCGTTGATAGGAGCTCTAATGTGCTCGACTCCAAAAGATCCAAGAATTCCTCTGTTTGTGTCGAACATGTTGTGCAGGTAGGTATGATGTGCTCAAACTAGTGTAAATAAGTTCAAGAAGTGTGGCTCTATGTTACTTAAATGTATATCGGAACAGTGAAAAACACTTTCCACATTATCTGTTGGTCAAGTTTTGAAACTAGTCTCACACATGTAGATTGAGCATAACTTTATGGCACTGAAGGAAGTTAAACATCCACAACACAAACTTAGGCCATGACTGGAGTGGTTCAAGACCCTTCTATAAAATCCTTTGGAACCCCCTTACACAACCTATGTGGGACATTTAATAACTTAACACACTCCTGCACACATAACCCAGTTTTGGTGGTTCACACATGAACTTTATGGGTGTGAGATAGGCTTACTGATTGTTTATTCTATACCTCGTGAAGAATCTGAGTATTTTGTCCAAAACCTTGAGGCAATGGTGCGGTGGCCCTAGACCTTATATACAACTTTCATAGCCCTTAGCCCCTTACTCAGTCCATGCGGGAAAATCAGTAACTCCTTTACGGCAAAACAAGAGGGCAGACCAAAATTTGGTGTCCTTGTACTGTAGTTTTGTTCAGTAAACCATTTGTTTTAGAATATTACCTCTTCGTTAATAGAACTCTTGACAAGTAAAATAGGACAAGCACAAAAATTAACAAAAGGCTGTCCAAGTCGGGGCTTGGAGTATGACATTTGTCCTTTCACTTCAATTTCATGTTTGGGCTTTTGGGTTCTGTTAATCTCAATGTAAATCCTCTTATTGTCCCCAAGGATTGTTTCTAGCTTATATGCGACGTAATGAAAATTTCAAATAAAAGGAGCAGATCGTCATATGATAAAAGTACTTTACCATGTTCTTCTCCCAATCATCCTATGATGACAATCTCAGGATAATGTCAAACATTTTTAAGTGTTCAAATTTTATCACCAAATTAAGCATCACTAAACTCGGTATAAGCAGGCTATATTTACGGCACCCTTTAAGAAAATAAAAACCTTATTGGCATGCATCATGAAGTCTAATCTCAGAGGATGTTCATTTCATTCTTAGGATAGTGCTCATCTAAGTTAGGTCTAGGAGTCACTATAACGTTTATTTGTTAGTACTATTTTAAACATTATTTTGGCATTTAATGCCCTTATGCCATTCTGTCATTATATGTACTTTCTTCATCAATCTTATAAATAGTATCTCATATCCTGATGATATAAAAGTAGATTAGTAATTGATTGCCTGCATTCCGCTCAAGTGGGAAAGTTATTATCTTTGTTGCTTAATCTTAAGCTACTTTCCTTTTTCTGGTGTGAAGGAGGAGTATCGGAAATTGGAAGTGCTGGCTTTTGAGATGGAGACAACAATTGCTTCTTTGGAAGAGGAATTAACAATTTCTCATGCAGAAAATGAAGAAGCCAATTCTAGAGCAGAAAATTTAGCATGTGAATTGCAAGCTTTATCTGACGAGTTGAATATG</genome_strand>
        <mrna_strand>ATGCTTATCTTTTAGTTCTTTAGGCAGAGAGAAGGAAAACATTAGAAAAGATTTGGAGAAAACAAAAGCAAAGTTGAGAGACACAGAATCCAAACTTAGGAATGCCATCCAGGAGAAGACAAAACTTGAG....................................................................................GGTGAAAGAGCTTGTGCTGAGAGGGAAATTAAACGCTTAAATGGCCAGAGGGCTATTCTTGAGCGTGACATCAATAAACGAGACTCAAATATTGGAAGAAGGCGTGATTCAGTCGTTGATAGGAGCTCTAATGTGCTCGACTCCAAAAGATCCAAGAATTCCTCTGTTTGTGTCGAACATGTTGTGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTATCGGAAATTGGAAGTGCTGGCTTTTGAGATGGAGACAACAATTGCTTCTTTGGAAGAGGAATTAACAATTTCTCATGCAGAAAATGAAGAAGCCAATTCTAGAGCAGAAAATTTAGCATGTGAATTGCAAGCTTTATCTGACGAGTTGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="127895" stop="126773"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127595" g_stop="127066" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127595" e_stop="127066"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGACGGATCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTCTGCTGCTCTTCTTTATTACCCTCGACGACAAGTATGACGGACCGTTATAGGCACAACGGTCCGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATCGACACGACGGACCGTCACAAGCTTCGTAA-CCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCACCTGCACTACGCTGCCACCTACGGACCGTCACAAGCATGATGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCATCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATCAATAATACCGTGAAACCACGGTATATCAAAGAGCC</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACGGTATATCACTTGGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="-" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="127753" stop="126757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127453" g_stop="127069" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="386" r_length="386" r_score="0.901"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="-" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.901</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="0.937" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127453" e_stop="127069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATCGACACGACGGACCGTCACAAGCTTCGTAA-CCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCACCTGCACTACGCTGCCACCTACGGACCGTCACAAGCATGATGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCATCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATCAATAATACCGTGAAACCACGGTATATCAAAGA</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACGGTATATCAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379634" ref_strand="+" ref_description="SGN-E379634 [TUS-3-F10]">
      <seq>tctctactgcgatgtcttgtaaccttttcgggttaatcttttcaatccttggcattatttagtctctctatattgtttattatttcctcgctcttgctttatactattcttctcaatcttattctagcttgctttaggtttttatggttacttgattgtctactttctttcctcagtgcaatcttcatcttcttggctacacttatttgcattttgtatattttttaagaccatattaattcaatacataattgttaccagttaaagtgattatcaagttcattctcagcggaaaaactgaatgcctatgtcatgtttatttggcacccataaattattcgacaaaatgtcctgtagaggcacattgcctaccacttctgaaaatagctttgaaattcactcaataggcattatacttctaaaatgtttgaaaaattgcccttaagaggcacattgtcaacggcttgtgaaaattgacttatggacttcaaaattcactcaacaagtattatctcagggcttctttctcctgtttttttactttcaaatctgggcaaaccatgcttattttcgtgcccatgaagtgttaaaaaaaaatcctcaagcagcacattgacnatggttcttgaaattgcctacgatggacatgtctattttggcatccatgaagtgttcgaaacaatgtcgtacactgccaacagcttcttgaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="131206" stop="132519"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131506" g_stop="132219" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="714" r_length="714" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E379634" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131506" e_stop="132219"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGA</genome_strand>
        <mrna_strand>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACNATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E208838" ref_strand="+" ref_description="SGN-E208838 [cLEC-51-I15]">
      <seq>tctctactgcgatgtcttgtaaccttttcgggttaatcttttcaatccttggcattatttagtctctctatattgtttattatttcctcgctcttgctttatactattcttctcaatcttattctagcttgctttaggtttttatggttacttgattgtctactttctttcctcagtgcaatcttcatcttcttggctacacttatttgcattttgtatattttttaagaccatattaattcaatacataattgttaccagttaaagtgattatcaagttcattctcagcggaaaaactgaatgcctatgtcatgtttatttggcacccataaattattcgacaaaatgtcctgtagaggcacattgcctaccacttctgaaaatagctttgaaattcactcaataggcattatacttctaaaatgtttgaaaaattgcccttaagaggcacattgtcaacggcttgtgaaaattgacttatggacttcaaaattcactcaacaagtattatctcagggcttctttctcctgtttttttactttcaaatctgggcaaaccatgcttattttcgtgcccatgaagtgttaaaaaaaaatcctcaagcagcacattgacaatggttcttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="131206" stop="132436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131506" g_stop="132136" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E208838" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208838" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131506" e_stop="132136"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAA</genome_strand>
        <mrna_strand>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E379569" ref_strand="+" ref_description="SGN-E379569 [TUS-3-F10](-)">
      <seq>tggctacacttatttgcatttngtatattttttaagaccatattaattcaatacataattgttaccagttaaagtgattatcaagttcattctcagcggaaaaactgaatgcctatgtcatgtttatttggcacccataaattattcgacaaaatgtcctgtagaggcacattgcctaccacttctgaaaatagctttgaaattcactcaataggcattatacttctaaaatgtttgaaaaattgcccttaagaggcacattgtcaacggcttgtgaaaattgacttatggacttcaaaattcactcaacaagtattatctcagggcttctttctcctgtttttttactttcaaatctgggcaaaccatgcttattttcgtgcccatgaagtgttaaaaaaaaatcctcaagcagcacattgacaatggttcttgaaattgcctacgatggacatgtctattttggcatccatgaagtgttcgaaacaatgtcgtacactgccaacagcttcttgaaatgacttcaaaaattagtcaccaaatattatctcaattctgaaggcttcttttcactggcttctctttcaaatctgcacaggtcatgcttattttgatactagattctgagaacgtgccttgcacgtttgtcccttattattattatattaattttttatatactaaaaagttaaggaattaaaaatatgcttaaattaacaatagtagtttaaccatttatcttaattcgctaaataataacaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0308B07-W2mZd/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0308B07.2" temp_strand="+" temp_description="C04HBa0308B07.2  CT990558.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0308B07 sequenced_by:sanger upload_account_name:uk">
        <position start="131399" stop="132764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131699" g_stop="132464" g_length="766"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0308B07.2" gen_strand="+" ref_id="SGN-E379569" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0308B07.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131699" e_stop="132464"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGACTTCAAAAATTAGTCACCAAATATTATCTCAATTCTGAAGGCTTCTTTTCACTGGCTTCTCTTTCAAATCTGCACAGGTCATGCTTATTTTGATACTAGATTCTGAGAACGTGCCTTGCACGTTTGTCCCTTATTATTATTATATTAATTTTTTATATACTAAAAAGTTAAGGAATTAAAAATATGCTTAAATTAACAATAGTAGTTTAACCATTTATCTTTTATTCGCTAAATAATAACAAATA</genome_strand>
        <mrna_strand>TGGCTACACTTATTTGCATTTNGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGACTTCAAAAATTAGTCACCAAATATTATCTCAATTCTGAAGGCTTCTTTTCACTGGCTTCTCTTTCAAATCTGCACAGGTCATGCTTATTTTGATACTAGATTCTGAGAACGTGCCTTGCACGTTTGTCCCTTATTATTATTATATTAATTTTTTATATACTAAAAAGTTAAGGAATTAAAAATATGCTTAAATTAACAATAGTAGTTTAACCATTTATC-TTAATTCGCTAAATAATAACAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>164</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8023" PGL_stop="10134"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8023" e_stop="8273"/>
            <exon e_start="9357" e_stop="10134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.988" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8023" e_stop="8273" e_length="251"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.988">
            <gDNA_intron_boundary i_start="8274" i_stop="9356" i_length="1083"/>
          </intron>
          <exon e_serial="2" e_score="0.990">
            <gDNA_exon_boundary e_start="9357" e_stop="10134" e_length="778"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8023" stop="8273"/>
              <exon start="9357" stop="9538"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243280" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8076" stop="8273"/>
              <exon start="9357" stop="9507"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8081" stop="8273"/>
              <exon start="9357" stop="9515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8088" stop="8273"/>
              <exon start="9357" stop="10020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8106" stop="8273"/>
              <exon start="9357" stop="9833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8109" stop="8273"/>
              <exon start="9357" stop="9668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353595" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8110" stop="8273"/>
              <exon start="9357" stop="9723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205479" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8110" stop="8273"/>
              <exon start="9357" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8115" stop="8273"/>
              <exon start="9357" stop="9855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E706004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8115" stop="8273"/>
              <exon start="9357" stop="9841"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8115" stop="8273"/>
              <exon start="9357" stop="9778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8115" stop="8273"/>
              <exon start="9357" stop="9739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8117" stop="8273"/>
              <exon start="9357" stop="9742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8117" stop="8273"/>
              <exon start="9357" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8118" stop="8273"/>
              <exon start="9357" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311624" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8120" stop="8273"/>
              <exon start="9357" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8120" stop="8273"/>
              <exon start="9357" stop="9701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8121" stop="8273"/>
              <exon start="9357" stop="9833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8121" stop="8273"/>
              <exon start="9357" stop="9751"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243632" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8121" stop="8273"/>
              <exon start="9357" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8122" stop="8273"/>
              <exon start="9357" stop="9739"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8124" stop="8273"/>
              <exon start="9357" stop="9570"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8126" stop="8273"/>
              <exon start="9357" stop="9970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E403881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8128" stop="8273"/>
              <exon start="9357" stop="10012"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8129" stop="8273"/>
              <exon start="9357" stop="9863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8130" stop="8273"/>
              <exon start="9357" stop="9791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202243" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8131" stop="8273"/>
              <exon start="9357" stop="9890"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397871" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8131" stop="8273"/>
              <exon start="9357" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392329" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8131" stop="8273"/>
              <exon start="9357" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392328" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8132" stop="8273"/>
              <exon start="9357" stop="9936"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342082" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8132" stop="8273"/>
              <exon start="9357" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8133" stop="8273"/>
              <exon start="9357" stop="9788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="8273"/>
              <exon start="9357" stop="9836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206106" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="8273"/>
              <exon start="9357" stop="9672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8135" stop="8273"/>
              <exon start="9357" stop="9458"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8136" stop="8273"/>
              <exon start="9357" stop="9769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340435" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="8273"/>
              <exon start="9357" stop="9909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212308" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="8273"/>
              <exon start="9357" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243701" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="8273"/>
              <exon start="9357" stop="9752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="8273"/>
              <exon start="9357" stop="9734"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="8273"/>
              <exon start="9357" stop="9733"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8137" stop="8273"/>
              <exon start="9357" stop="9683"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8139" stop="8273"/>
              <exon start="9357" stop="9596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335452" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8141" stop="8273"/>
              <exon start="9357" stop="9735"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281714" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8142" stop="8273"/>
              <exon start="9357" stop="9558"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240470" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8144" stop="8273"/>
              <exon start="9357" stop="9969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264011" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8144" stop="8273"/>
              <exon start="9357" stop="9773"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8146" stop="8273"/>
              <exon start="9357" stop="9672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242777" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8146" stop="8273"/>
              <exon start="9357" stop="9659"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239485" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8148" stop="8273"/>
              <exon start="9357" stop="9970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8149" stop="8273"/>
              <exon start="9357" stop="9662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8150" stop="8273"/>
              <exon start="9357" stop="9844"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8156" stop="8273"/>
              <exon start="9357" stop="9865"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8162" stop="8273"/>
              <exon start="9357" stop="9700"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8168" stop="8273"/>
              <exon start="9357" stop="9642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240040" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8178" stop="8273"/>
              <exon start="9357" stop="9864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241388" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8178" stop="8273"/>
              <exon start="9357" stop="9551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204198" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8185" stop="8273"/>
              <exon start="9357" stop="9482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335763" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8196" stop="8273"/>
              <exon start="9357" stop="9776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238273" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8200" stop="8273"/>
              <exon start="9357" stop="9881"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236415" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8203" stop="8273"/>
              <exon start="9357" stop="9849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231857" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8203" stop="8273"/>
              <exon start="9357" stop="9800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8210" stop="8273"/>
              <exon start="9357" stop="9736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8230" stop="8273"/>
              <exon start="9357" stop="10133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8230" stop="8273"/>
              <exon start="9357" stop="10004"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376685" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8230" stop="8273"/>
              <exon start="9357" stop="9744"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231496" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8234" stop="8273"/>
              <exon start="9357" stop="9708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8238" stop="8273"/>
              <exon start="9357" stop="9818"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8240" stop="8273"/>
              <exon start="9357" stop="9981"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9357" stop="9969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9387" stop="10133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9389" stop="10133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9391" stop="10123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9396" stop="10134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9428" stop="9983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9437" stop="9969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9467" stop="10112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9482" stop="10133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9482" stop="10119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9534" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9535" stop="10130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9558" stop="10055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290352" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9584" stop="10084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9630" stop="10131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210453" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="10113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9655" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231441" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9708" stop="10119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300458" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9774" stop="9983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9785" stop="10123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9894" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAATGCTATTTTTCTTCTTCTTCTTGAGCTAAGCATATATTAAAAGGGGATGAATGATTTAAAATACATGTAGTTCATTATTAACTTACAAAAAAAAAAAATGGCAAATTTGTTCATTAAGCAAGCACAACAATATTCAAAGGGTAGGCCAAGTTACCCTCAAGAATTATTCAATTTCATTGCTTCTAAAACACCTTCTCATGATCTTGTTTGGGATGTTGGTACTGGTAGTGGCCAGGCTGCTCAATCT : TTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCTATT</gDNA_template>
            <first_frame> K  M  L  F  F  F  F  F  L  S  *  A  Y  I  K  R  G  *  M  I  *  N  T  C  S  S  L  L  T  Y  K  K  K  K  W  Q  I  C  S  L  S  K  H  N  N  I  Q  R  V  G  Q  V  T  L  K  N  Y  S  I  S  L  L  L  K  H  L  L  M  I  L  F  G  M  L  V  L  V  V  A  R  L  L  N  L :   *  L  S  F  T  R  M  *  *  L  Q  T  Q  V  Q  S  S  L  N  L  Q  Q  R  F  Q  M  F  N  T  Y  V  P  L  L  S  C  Q  N  P  K  S  K  Q  K  *  D  Q  N  Q  V  *  I  *  *  Q  L  H  K  Q  C  I  G  L  I  Y  Q  L  F  M  N  M  L  N  G  Y  S  R  N  Q  M  V  L  *  H  H  G  V  T  L  H  L  K  *  T  T  Q  *  M  Q  Y  L  I  N  F  T  Q  V  M  L  D  L  I  G  N  H  Q  E  N  W  S  M  K  S  M  K  L  L  I  F  H  L  R  L  *  M  D  V  I  I  M  D  H  L  S  S  R  L  R  K  L  W  T  W  I  L  V  L  H  T  *  S  H  G  Q  L  I  K  L  Q  K  K  R  V  L  S  C  *  V  K  M  L  L  K  N  L  Q  V  L  G  M  K  M  G  R  V  R  K  K  *  F  I  L  F  T  *  G  L  E  K  L  E  I  W  I  E  S  V  K  Q  I  Q  L  V  M  C  T  *  S  S  I  Y  F  V  C  Y  F  S  *  L  L  L  L  C  I  F  *  *  *  *  S  I  *  V  L  I  N  T  S  I </first_frame>
            <second_frame>  K  C  Y  F  S  S  S  S  *  A  K  H  I  L  K  G  D  E  *  F  K  I  H  V  V  H  Y  *  L  T  K  K  K  N  G  K  F  V  H  *  A  S  T  T  I  F  K  G  *  A  K  L  P  S  R  I  I  Q  F  H  C  F  *  N  T  F  S  *  S  C  L  G  C  W  Y  W  *  W  P  G  C  S  I   : F  S  *  A  L  Q  E  C  D  S  Y  R  H  K  S  K  A  A  *  I  C  S  K  G  S  K  C  S  I  H  M  Y  L  S  *  V  V  K  I  R  N  R  N  K  N  R  I  R  I  K  C  R  F  S  N  N  C  T  S  N  A  L  V  *  S  T  N  F  L  *  T  C  *  M  V  T  Q  E  T  K  W  C  Y  S  I  M  V  L  H  Y  T  *  N  K  Q  L  S  R  C  N  I  *  *  I  L  H  K  *  C  W  T  L  L  G  I  T  K  K  I  G  R  *  K  V  *  N  Y  *  F  S  I  *  G  Y  R  W  M  *  S  *  W  T  I  *  V  Q  D  *  E  S  Y  G  L  G  F  L  F  Y  I  L  E  V  M  V  S  L  S  N  C  K  R  K  G  C  *  V  V  K  *  R  C  C  *  K  I  Y  K  C  L  E  *  R  W  E  E  *  E  K  S  D  L  S  Y  L  L  E  D  W  K  S  W  K  F  G  L  K  V  *  S  K  Y  N  *  L  C  A  L  D  H  L  F  I  L  Y  V  I  S  L  S  C  Y  C  Y  V  S  F  N  N  N  K  V  S  K  Y  *  L  I  H  L   </second_frame>
            <third_frame>   N  A  I  F  L  L  L  L  E  L  S  I  Y  *  K  G  M  N  D  L  K  Y  M  *  F  I  I  N  L  Q  K  K  K  M  A  N  L  F  I  K  Q  A  Q  Q  Y  S  K  G  R  P  S  Y  P  Q  E  L  F  N  F  I  A  S  K  T  P  S  H  D  L  V  W  D  V  G  T  G  S  G  Q  A  A  Q  S  :  L  A  K  L  Y  K  N  V  I  A  T  D  T  S  P  K  Q  L  E  F  A  A  K  V  P  N  V  Q  Y  I  C  T  S  P  K  L  S  K  S  E  I  E  T  K  I  G  S  E  S  S  V  D  L  V  T  I  A  Q  A  M  H  W  F  D  L  P  T  F  Y  E  H  V  K  W  L  L  K  K  P  N  G  V  I  A  S  W  C  Y  T  T  P  K  I  N  N  S  V  D  A  I  F  D  K  F  Y  T  S  D  A  G  P  Y  W  E  S  P  R  K  L  V  D  E  K  Y  E  T  I  D  F  P  F  E  A  I  D  G  C  D  H  N  G  P  F  E  F  K  I  E  K  V  M  D  L  D  S  C  F  T  Y  L  K  S  W  S  A  Y  Q  T  A  K  E  K  G  V  E  L  L  S  E  D  V  V  E  K  F  T  S  A  W  N  E  D  G  K  S  E  K  K  V  I  Y  P  I  Y  L  R  I  G  K  V  G  N  L  D  *  K  C  K  A  N  T  I  S  Y  V  H  L  I  I  Y  L  F  C  M  L  F  L  L  V  V  I  V  M  Y  L  L  I  I  I  K  Y  L  S  T  N  *  Y  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8097" stop="8273"/>
                    <exon start="9357" stop="10001"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>819</number_coding_nucleotides>
                  <number_encoded_amino_acids>273</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FIINLQKKKMANLFIKQAQQYSKGRPSYPQELFNFIASKTPSHDLVWDVGTGSGQAAQSLAKLYKNVIATDTSPKQLEFAAKVPNVQYICTSPKLSKSEIETKIGSESSVDLVTIAQAMHWFDLPTFYEHVKWLLKKPNGVIASWCYTTPKINNSVDAIFDKFYTSDAGPYWESPRKLVDEKYETIDFPFEAIDGCDHNGPFEFKIEKVMDLDSCFTYLKSWSAYQTAKEKGVELLSEDVVEKFTSAWNEDGKSEKKVIYPIYLRIGKVGNLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9163" e_stop="10134"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="9163" e_stop="10134" e_length="972"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9163" stop="9788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9163" stop="9772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9163" stop="9745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9163" stop="9587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9170" stop="9836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9170" stop="9729"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9259" stop="9923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9259" stop="9760"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395801" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9260" stop="9832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231731" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9357" stop="9969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238336" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9387" stop="10133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9389" stop="10133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9391" stop="10123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9396" stop="10134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9428" stop="9983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405381" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9437" stop="9969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243700" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9467" stop="10112"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9482" stop="10133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397908" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9482" stop="10119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396109" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9534" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9535" stop="10130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367840" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9558" stop="10055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290352" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9584" stop="10084"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E402852" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9630" stop="10131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210453" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9643" stop="10113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E376750" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9655" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231441" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9708" stop="10119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300458" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9774" stop="9983"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260231" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9785" stop="10123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9894" stop="10127"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395869" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATAATTTGAAGCCAAGTTAAAGGACATATTTATGTATTATGTCTTCTATATTTAAAACATCTATTCATTTTTGGCCGGCATAACGTAAATTTCATCATATGTCAAACTCCACCGCATAAATTGAAACAGTCCTTAGTGTTCATAAACTTGTTTCTTTTATCCTAACTTCCTCCAAAAATGTTGTGTTCCTCAGTTAGCTAAGCTTTACAAGAATGTGATAGCTACAGACACAAGTCCAAAGCAGCTTGAATTTGCAGCAAAGGTTCCAAATGTTCAATACATATGTACCTCTCCTAAGTTGTCAAAATCCGAAATCGAAACAAAAATAGGATCAGAATCAAGTGTAGATTTAGTAACAATTGCACAAGCAATGCATTGGTTTGATCTACCAACTTTTTATGAACATGTTAAATGGTTACTCAAGAAACCAAATGGTGTTATAGCATCATGGTGTTACACTACACCTAAAATAAACAACTCAGTAGATGCAATATTTGATAAATTTTACACAAGTGATGCTGGACCTTATTGGGAATCACCAAGAAAATTGGTCGATGAAAAGTATGAAACTATTGATTTTCCATTTGAGGCTATAGATGGATGTGATCATAATGGACCATTTGAGTTCAAGATTGAGAAAGTTATGGACTTGGATTCTTGTTTTACATACTTGAAGTCATGGTCAGCTTATCAAACTGCAAAAGAAAAGGGTGTTGAGTTGTTAAGTGAAGATGTTGTTGAAAAATTTACAAGTGCTTGGAATGAAGATGGGAAGAGTGAGAAAAAAGTGATTTATCCTATTTACTTGAGGATTGGAAAAGTTGGAAATTTGGATTGAAAGTGTAAAGCAAATACAATTAGTTATGTGCACTTGATCATCTATTTATTTTGTATGTTATTTCTCTTAGTTGTTATTGTTATGTATCTTTTAATAATAATAAAGTATCTAAGTACTAATTAATACATCTATT</gDNA_template>
            <first_frame> H  N  L  K  P  S  *  R  T  Y  L  C  I  M  S  S  I  F  K  T  S  I  H  F  W  P  A  *  R  K  F  H  H  M  S  N  S  T  A  *  I  E  T  V  L  S  V  H  K  L  V  S  F  I  L  T  S  S  K  N  V  V  F  L  S  *  L  S  F  T  R  M  *  *  L  Q  T  Q  V  Q  S  S  L  N  L  Q  Q  R  F  Q  M  F  N  T  Y  V  P  L  L  S  C  Q  N  P  K  S  K  Q  K  *  D  Q  N  Q  V  *  I  *  *  Q  L  H  K  Q  C  I  G  L  I  Y  Q  L  F  M  N  M  L  N  G  Y  S  R  N  Q  M  V  L  *  H  H  G  V  T  L  H  L  K  *  T  T  Q  *  M  Q  Y  L  I  N  F  T  Q  V  M  L  D  L  I  G  N  H  Q  E  N  W  S  M  K  S  M  K  L  L  I  F  H  L  R  L  *  M  D  V  I  I  M  D  H  L  S  S  R  L  R  K  L  W  T  W  I  L  V  L  H  T  *  S  H  G  Q  L  I  K  L  Q  K  K  R  V  L  S  C  *  V  K  M  L  L  K  N  L  Q  V  L  G  M  K  M  G  R  V  R  K  K  *  F  I  L  F  T  *  G  L  E  K  L  E  I  W  I  E  S  V  K  Q  I  Q  L  V  M  C  T  *  S  S  I  Y  F  V  C  Y  F  S  *  L  L  L  L  C  I  F  *  *  *  *  S  I  *  V  L  I  N  T  S  I </first_frame>
            <second_frame>  I  I  *  S  Q  V  K  G  H  I  Y  V  L  C  L  L  Y  L  K  H  L  F  I  F  G  R  H  N  V  N  F  I  I  C  Q  T  P  P  H  K  L  K  Q  S  L  V  F  I  N  L  F  L  L  S  *  L  P  P  K  M  L  C  S  S  V  S  *  A  L  Q  E  C  D  S  Y  R  H  K  S  K  A  A  *  I  C  S  K  G  S  K  C  S  I  H  M  Y  L  S  *  V  V  K  I  R  N  R  N  K  N  R  I  R  I  K  C  R  F  S  N  N  C  T  S  N  A  L  V  *  S  T  N  F  L  *  T  C  *  M  V  T  Q  E  T  K  W  C  Y  S  I  M  V  L  H  Y  T  *  N  K  Q  L  S  R  C  N  I  *  *  I  L  H  K  *  C  W  T  L  L  G  I  T  K  K  I  G  R  *  K  V  *  N  Y  *  F  S  I  *  G  Y  R  W  M  *  S  *  W  T  I  *  V  Q  D  *  E  S  Y  G  L  G  F  L  F  Y  I  L  E  V  M  V  S  L  S  N  C  K  R  K  G  C  *  V  V  K  *  R  C  C  *  K  I  Y  K  C  L  E  *  R  W  E  E  *  E  K  S  D  L  S  Y  L  L  E  D  W  K  S  W  K  F  G  L  K  V  *  S  K  Y  N  *  L  C  A  L  D  H  L  F  I  L  Y  V  I  S  L  S  C  Y  C  Y  V  S  F  N  N  N  K  V  S  K  Y  *  L  I  H  L   </second_frame>
            <third_frame>   *  F  E  A  K  L  K  D  I  F  M  Y  Y  V  F  Y  I  *  N  I  Y  S  F  L  A  G  I  T  *  I  S  S  Y  V  K  L  H  R  I  N  *  N  S  P  *  C  S  *  T  C  F  F  Y  P  N  F  L  Q  K  C  C  V  P  Q  L  A  K  L  Y  K  N  V  I  A  T  D  T  S  P  K  Q  L  E  F  A  A  K  V  P  N  V  Q  Y  I  C  T  S  P  K  L  S  K  S  E  I  E  T  K  I  G  S  E  S  S  V  D  L  V  T  I  A  Q  A  M  H  W  F  D  L  P  T  F  Y  E  H  V  K  W  L  L  K  K  P  N  G  V  I  A  S  W  C  Y  T  T  P  K  I  N  N  S  V  D  A  I  F  D  K  F  Y  T  S  D  A  G  P  Y  W  E  S  P  R  K  L  V  D  E  K  Y  E  T  I  D  F  P  F  E  A  I  D  G  C  D  H  N  G  P  F  E  F  K  I  E  K  V  M  D  L  D  S  C  F  T  Y  L  K  S  W  S  A  Y  Q  T  A  K  E  K  G  V  E  L  L  S  E  D  V  V  E  K  F  T  S  A  W  N  E  D  G  K  S  E  K  K  V  I  Y  P  I  Y  L  R  I  G  K  V  G  N  L  D  *  K  C  K  A  N  T  I  S  Y  V  H  L  I  I  Y  L  F  C  M  L  F  L  L  V  V  I  V  M  Y  L  L  I  I  I  K  Y  L  S  T  N  *  Y  I  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9309" stop="10001"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCFFYPNFLQKCCVPQLAKLYKNVIATDTSPKQLEFAAKVPNVQYICTSPKLSKSEIETKIGSESSVDLVTIAQAMHWFDLPTFYEHVKWLLKKPNGVIASWCYTTPKINNSVDAIFDKFYTSDAGPYWESPRKLVDEKYETIDFPFEAIDGCDHNGPFEFKIEKVMDLDSCFTYLKSWSAYQTAKEKGVELLSEDVVEKFTSAWNEDGKSEKKVIYPIYLRIGKVGNLD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="10134" PGL_stop="9643"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10134" e_stop="9643"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="10134" e_stop="9643" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10134" stop="9765"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286795" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10126" stop="9643"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258519" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATAGATGTATTAATTAGTACTTAGATACTTTATTATTATTAAAAGATACATAACAATAACAACTAAGAGAAATAACATACAAAATAAATAGATGATCAAGTGCACATAACTAATTGTATTTGCTTTACACTTTCAATCCAAATTTCCAACTTTTCCAATCCTCAAGTAAATAGGATAAATCACTTTTTTCTCACTCTTCCCATCTTCATTCCAAGCACTTGTAAATTTTTCAACAACATCTTCACTTAACAACTCAACACCCTTTTCTTTTGCAGTTTGATAAGCTGACCATGACTTCAAGTATGTAAAACAAGAATCCAAGTCCATAACTTTCTCAATCTTGAACTCAAATGGTCCATTATGATCACATCCATCTATAGCCTCAAATGGAAAATCAATAGTTTCATACTTTTCATCGACCAATTTTCTTGGTGATTCCCAATAAGGTCCAGCATCACTTGTGTAAAATTTATCAAATATTGCATCTACTG</gDNA_template>
            <first_frame> N  R  C  I  N  *  Y  L  D  T  L  L  L  L  K  D  T  *  Q  *  Q  L  R  E  I  T  Y  K  I  N  R  *  S  S  A  H  N  *  L  Y  L  L  Y  T  F  N  P  N  F  Q  L  F  Q  S  S  S  K  *  D  K  S  L  F  S  H  S  S  H  L  H  S  K  H  L  *  I  F  Q  Q  H  L  H  L  T  T  Q  H  P  F  L  L  Q  F  D  K  L  T  M  T  S  S  M  *  N  K  N  P  S  P  *  L  S  Q  S  *  T  Q  M  V  H  Y  D  H  I  H  L  *  P  Q  M  E  N  Q  *  F  H  T  F  H  R  P  I  F  L  V  I  P  N  K  V  Q  H  H  L  C  K  I  Y  Q  I  L  H  L  L </first_frame>
            <second_frame>  I  D  V  L  I  S  T  *  I  L  Y  Y  Y  *  K  I  H  N  N  N  N  *  E  K  *  H  T  K  *  I  D  D  Q  V  H  I  T  N  C  I  C  F  T  L  S  I  Q  I  S  N  F  S  N  P  Q  V  N  R  I  N  H  F  F  L  T  L  P  I  F  I  P  S  T  C  K  F  F  N  N  I  F  T  *  Q  L  N  T  L  F  F  C  S  L  I  S  *  P  *  L  Q  V  C  K  T  R  I  Q  V  H  N  F  L  N  L  E  L  K  W  S  I  M  I  T  S  I  Y  S  L  K  W  K  I  N  S  F  I  L  F  I  D  Q  F  S  W  *  F  P  I  R  S  S  I  T  C  V  K  F  I  K  Y  C  I  Y   </second_frame>
            <third_frame>   *  M  Y  *  L  V  L  R  Y  F  I  I  I  K  R  Y  I  T  I  T  T  K  R  N  N  I  Q  N  K  *  M  I  K  C  T  *  L  I  V  F  A  L  H  F  Q  S  K  F  P  T  F  P  I  L  K  *  I  G  *  I  T  F  F  S  L  F  P  S  S  F  Q  A  L  V  N  F  S  T  T  S  S  L  N  N  S  T  P  F  S  F  A  V  *  *  A  D  H  D  F  K  Y  V  K  Q  E  S  K  S  I  T  F  S  I  L  N  S  N  G  P  L  *  S  H  P  S  I  A  S  N  G  K  S  I  V  S  Y  F  S  S  T  N  F  L  G  D  S  Q  *  G  P  A  S  L  V  *  N  L  S  N  I  A  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0308B07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="19906" PGL_stop="11047"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19906" e_stop="19422"/>
            <exon e_start="13260" e_stop="13084"/>
            <exon e_start="12415" e_stop="12302"/>
            <exon e_start="11424" e_stop="11047"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="0.990"/>
          <exon-intron don_prob="0.946" acc_prob="0.201" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="19906" e_stop="19422" e_length="485"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="19421" i_stop="13261" i_length="6161"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13260" e_stop="13084" e_length="177"/>
          </exon>
          <intron i_serial="2" don_prob="0.946" acc_prob="0.201">
            <gDNA_intron_boundary i_start="13083" i_stop="12416" i_length="668"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="12415" e_stop="12302" e_length="114"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="0.998">
            <gDNA_intron_boundary i_start="12301" i_stop="11425" i_length="877"/>
          </intron>
          <exon e_serial="4" e_score="0.997">
            <gDNA_exon_boundary e_start="11424" e_stop="11047" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19906" stop="19422"/>
              <exon start="13260" stop="13086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E709791" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19735" stop="19422"/>
              <exon start="13260" stop="13084"/>
              <exon start="12415" stop="12378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19729" stop="19422"/>
              <exon start="13260" stop="13084"/>
              <exon start="12415" stop="12302"/>
              <exon start="11424" stop="11310"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19729" stop="19422"/>
              <exon start="13260" stop="13084"/>
              <exon start="12415" stop="12302"/>
              <exon start="11424" stop="11376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E401439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19582" stop="19422"/>
              <exon start="13260" stop="13084"/>
              <exon start="12415" stop="12302"/>
              <exon start="11424" stop="11205"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19581" stop="19422"/>
              <exon start="13260" stop="13084"/>
              <exon start="12415" stop="12302"/>
              <exon start="11424" stop="11376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19448" stop="19422"/>
              <exon start="13260" stop="13084"/>
              <exon start="12415" stop="12302"/>
              <exon start="11424" stop="11136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287125" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13241" stop="13084"/>
              <exon start="12415" stop="12302"/>
              <exon start="11424" stop="11047"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395468" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTCCCTAAAGTATAATGGTAATATCTCAAAAGTACGAAAGTACAATGATAGCGGTATTAATGCCTAAAAAATATCCCGATGTACGATAGTTCGGCAGTATATACACTTTTTCCCTTTTAAAAGATATTCTTTTGGTAATTTTGACAGTTCGTAAAACCCCCAAAACCCCTCGAACGAACGTAGCTGAAAAATCAAAGAAGAGCAGAGCAGAGGAAGATGGATCTTAATGGGTTAGCGATGGATGTTGATGGCGAAAATTTGGGTACTTGTTTAGCTAGCTTTGTTGATGATGGTACAGTTGAAAGTCACAGATACTTTCTTGCTCGCAGAACCATACTCGAAATGCTTAAAGATCGTGGTTTTGCAATACCCAATTCAGAAATCGACACTACACTTCAAGAATTCAGAGAAAAATATGGTCAAACACCTGATGTTGAGCGCCTTAGAGTTTCCGCAATGCACAGGAATGACCTAACCAATAAG : GTTTTGGTCATCTTCTGCGGGCCAAATGCCGTGAAAGTGAATGTCATCCGCAGCATTTTAACTCAGATAATGAACAAGGAATCTTTGAGTCGACTGATATTGGTCATTCAAAATCAAATGACTAATCCAGCTTTGAAAGCTGTGGAGCTTTTCTCATTTAAAGTTGAAATTTTCCAG : ATCACAGATTTACTTGTCAATATCACAAAACATGTTTTAAAGCCAAGGCATGAGTTGTTAACCGACACTGAGAAGGAGAAGCTGTTGAAGAAGTATAACTTGGAAGAGAAGCAG : CTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTTTCAGTATCGAA</gDNA_template>
            <first_frame> I  S  L  K  Y  N  G  N  I  S  K  V  R  K  Y  N  D  S  G  I  N  A  *  K  I  S  R  C  T  I  V  R  Q  Y  I  H  F  F  P  F  K  R  Y  S  F  G  N  F  D  S  S  *  N  P  Q  N  P  S  N  E  R  S  *  K  I  K  E  E  Q  S  R  G  R  W  I  L  M  G  *  R  W  M  L  M  A  K  I  W  V  L  V  *  L  A  L  L  M  M  V  Q  L  K  V  T  D  T  F  L  L  A  E  P  Y  S  K  C  L  K  I  V  V  L  Q  Y  P  I  Q  K  S  T  L  H  F  K  N  S  E  K  N  M  V  K  H  L  M  L  S  A  L  E  F  P  Q  C  T  G  M  T  *  P  I  R :   F  W  S  S  S  A  G  Q  M  P  *  K  *  M  S  S  A  A  F  *  L  R  *  *  T  R  N  L  *  V  D  *  Y  W  S  F  K  I  K  *  L  I  Q  L  *  K  L  W  S  F  S  H  L  K  L  K  F  S  R :   S  Q  I  Y  L  S  I  S  Q  N  M  F  *  S  Q  G  M  S  C  *  P  T  L  R  R  R  S  C  *  R  S  I  T  W  K  R  S  S :   C  H  G  C  L  R  R  M  Q  L  L  G  T  M  D  L  R  R  G  R  *  *  R  S  R  T  A  V  K  S  S  R  H  M  L  L  I  A  V  S  G  D  A  T  M  *  I  Y  P  M  Y  N  *  M  S  L  Q  Q  A  A  *  L  T  Y  H  I  L  F  C  Y  Q  H  A  I  *  T  F  S  S  T  P  G  V  P  P  F  S  T  L  V  Q  M  K  S  L  *  V  F  S  T  L  F  L  S  L  H  L  N  S  C  S  A  R  G  I  N  R  N  *  I  F  F  S  V  S   </first_frame>
            <second_frame>  S  P  *  S  I  M  V  I  S  Q  K  Y  E  S  T  M  I  A  V  L  M  P  K  K  Y  P  D  V  R  *  F  G  S  I  Y  T  F  S  L  L  K  D  I  L  L  V  I  L  T  V  R  K  T  P  K  T  P  R  T  N  V  A  E  K  S  K  K  S  R  A  E  E  D  G  S  *  W  V  S  D  G  C  *  W  R  K  F  G  Y  L  F  S  *  L  C  *  *  W  Y  S  *  K  S  Q  I  L  S  C  S  Q  N  H  T  R  N  A  *  R  S  W  F  C  N  T  Q  F  R  N  R  H  Y  T  S  R  I  Q  R  K  I  W  S  N  T  *  C  *  A  P  *  S  F  R  N  A  Q  E  *  P  N  Q  *   : G  F  G  H  L  L  R  A  K  C  R  E  S  E  C  H  P  Q  H  F  N  S  D  N  E  Q  G  I  F  E  S  T  D  I  G  H  S  K  S  N  D  *  S  S  F  E  S  C  G  A  F  L  I  *  S  *  N  F  P   : D  H  R  F  T  C  Q  Y  H  K  T  C  F  K  A  K  A  *  V  V  N  R  H  *  E  G  E  A  V  E  E  V  *  L  G  R  E  A   : A  A  T  D  V  S  E  G  C  N  C  S  V  L  W  T  *  E  G  A  G  S  E  G  H  V  Q  Q  *  N  H  R  D  T  C  Y  L  S  L  C  L  V  M  Q  L  C  K  S  I  L  C  T  I  K  *  V  C  S  K  Q  P  S  *  L  T  I  S  C  S  V  T  N  M  L  F  E  L  F  P  Q  P  L  G  F  L  P  S  Q  P  *  F  K  *  R  A  C  R  Y  L  V  H  Y  S  C  H  S  I  *  I  L  V  R  Q  E  E  L  I  E  I  K  F  F  F  Q  Y  R  </second_frame>
            <third_frame>   L  P  K  V  *  W  *  Y  L  K  S  T  K  V  Q  *  *  R  Y  *  C  L  K  N  I  P  M  Y  D  S  S  A  V  Y  T  L  F  P  F  *  K  I  F  F  W  *  F  *  Q  F  V  K  P  P  K  P  L  E  R  T  *  L  K  N  Q  R  R  A  E  Q  R  K  M  D  L  N  G  L  A  M  D  V  D  G  E  N  L  G  T  C  L  A  S  F  V  D  D  G  T  V  E  S  H  R  Y  F  L  A  R  R  T  I  L  E  M  L  K  D  R  G  F  A  I  P  N  S  E  I  D  T  T  L  Q  E  F  R  E  K  Y  G  Q  T  P  D  V  E  R  L  R  V  S  A  M  H  R  N  D  L  T  N  K  :  V  L  V  I  F  C  G  P  N  A  V  K  V  N  V  I  R  S  I  L  T  Q  I  M  N  K  E  S  L  S  R  L  I  L  V  I  Q  N  Q  M  T  N  P  A  L  K  A  V  E  L  F  S  F  K  V  E  I  F  Q  :  I  T  D  L  L  V  N  I  T  K  H  V  L  K  P  R  H  E  L  L  T  D  T  E  K  E  K  L  L  K  K  Y  N  L  E  E  K  Q  :  L  P  R  M  S  Q  K  D  A  I  A  R  Y  Y  G  L  E  K  G  Q  V  V  K  V  T  Y  S  S  E  I  I  E  T  H  V  T  Y  R  C  V  W  *  C  N  Y  V  N  L  S  Y  V  Q  L  N  E  S  A  A  S  S  L  A  N  L  P  Y  L  V  L  L  P  T  C  Y  L  N  F  F  L  N  P  W  G  S  S  L  L  N  L  S  S  N  E  E  L  V  G  I  *  Y  T  I  L  V  T  P  F  K  F  L  F  G  K  R  N  *  S  K  L  N  F  F  F  S  I  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19721" stop="19422"/>
                    <exon start="13260" stop="13084"/>
                    <exon start="12415" stop="12302"/>
                    <exon start="11424" stop="11299"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>714</number_coding_nucleotides>
                  <number_encoded_amino_acids>238</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKNQRRAEQRKMDLNGLAMDVDGENLGTCLASFVDDGTVESHRYFLARRTILEMLKDRGFAIPNSEIDTTLQEFREKYGQTPDVERLRVSAMHRNDLTNKVLVIFCGPNAVKVNVIRSILTQIMNKESLSRLILVIQNQMTNPALKAVELFSFKVEIFQITDLLVNITKHVLKPRHELLTDTEKEKLLKKYNLEEKQLPRMSQKDAIARYYGLEKGQVVKVTYSSEIIETHVTYRCVW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="11927" e_stop="11057"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="11927" e_stop="11057" e_length="871"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="11057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552914" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="11058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="11076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553350" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11927" stop="11156"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E552814" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCATTTTGAGCCAATACCTAGAACTCTTTTGCATATAGTGTTGTCTTGAAGGAGGTTAATAACAGGAGCCTTCTAATACTTATCTTGGTAATTTAATGTTGTAGACCAGTGTTGGTGACTTCTCTGGATTACTGTTTAAAAAAATGCTTTATGTTTGTCATTATCCCTTTACTGTGAGGGTGAAATGACTTAAATGCTGTTCTAAAACTTTTAGTTTAGGTACTTATAGATTGCTGCCTTTTTAAATTTGATGAATGGGAAGCATTACTTGCCCTATCTCTCTCACACTACTTATCAGAATCAATATGTAGGACCTTACTTGTAGAGACAGGTTTCCGCGTTCATCTTATGCTTATCAATGGTATTGTTGCTGATCACTCTCTCCAGCAGAAATCCATAGTTCACAAGGCTATATATGCACTTCAATGTACCACTCTTTTCTTCAAACATTATCAATGCAGTTCATTTTGTCTGAGTATTGTTATTGTATTGATGTTTTCCAGCTGCCACGGATGTCTCAGAAGGATGCAATTGCTCGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAGGTCACGTACAGCAGTGAAATCATCGAGACACATGTTACTTATCGCTGTGTCTGGTGATGCAACTATGTAAATCTATCCTATGTACAATTAAATGAGTCTGCAGCAAGCAGCCTAGCTAACTTACCATATCTTGTTCTGTTACCAACATGCTATTTGAACTTTTTCCTCAACCCCTGGGGTTCCTCCCTTCTCAACCTTAGTTCAAATGAAGAGCTTGTAGGTATTTAGTACACTATTCTTGTCACTCCATTTAAATTCTTGTTCGGCAAGAGGAATTAATCGAAATTAAATTTTTTTTT</gDNA_template>
            <first_frame> A  F  *  A  N  T  *  N  S  F  A  Y  S  V  V  L  K  E  V  N  N  R  S  L  L  I  L  I  L  V  I  *  C  C  R  P  V  L  V  T  S  L  D  Y  C  L  K  K  C  F  M  F  V  I  I  P  L  L  *  G  *  N  D  L  N  A  V  L  K  L  L  V  *  V  L  I  D  C  C  L  F  K  F  D  E  W  E  A  L  L  A  L  S  L  S  H  Y  L  S  E  S  I  C  R  T  L  L  V  E  T  G  F  R  V  H  L  M  L  I  N  G  I  V  A  D  H  S  L  Q  Q  K  S  I  V  H  K  A  I  Y  A  L  Q  C  T  T  L  F  F  K  H  Y  Q  C  S  S  F  C  L  S  I  V  I  V  L  M  F  S  S  C  H  G  C  L  R  R  M  Q  L  L  G  T  M  D  L  R  R  G  R  *  *  R  S  R  T  A  V  K  S  S  R  H  M  L  L  I  A  V  S  G  D  A  T  M  *  I  Y  P  M  Y  N  *  M  S  L  Q  Q  A  A  *  L  T  Y  H  I  L  F  C  Y  Q  H  A  I  *  T  F  S  S  T  P  G  V  P  P  F  S  T  L  V  Q  M  K  S  L  *  V  F  S  T  L  F  L  S  L  H  L  N  S  C  S  A  R  G  I  N  R  N  *  I  F  F  </first_frame>
            <second_frame>  H  F  E  P  I  P  R  T  L  L  H  I  V  L  S  *  R  R  L  I  T  G  A  F  *  Y  L  S  W  *  F  N  V  V  D  Q  C  W  *  L  L  W  I  T  V  *  K  N  A  L  C  L  S  L  S  L  Y  C  E  G  E  M  T  *  M  L  F  *  N  F  *  F  R  Y  L  *  I  A  A  F  L  N  L  M  N  G  K  H  Y  L  P  Y  L  S  H  T  T  Y  Q  N  Q  Y  V  G  P  Y  L  *  R  Q  V  S  A  F  I  L  C  L  S  M  V  L  L  L  I  T  L  S  S  R  N  P  *  F  T  R  L  Y  M  H  F  N  V  P  L  F  S  S  N  I  I  N  A  V  H  F  V  *  V  L  L  L  Y  *  C  F  P  A  A  T  D  V  S  E  G  C  N  C  S  V  L  W  T  *  E  G  A  G  S  E  G  H  V  Q  Q  *  N  H  R  D  T  C  Y  L  S  L  C  L  V  M  Q  L  C  K  S  I  L  C  T  I  K  *  V  C  S  K  Q  P  S  *  L  T  I  S  C  S  V  T  N  M  L  F  E  L  F  P  Q  P  L  G  F  L  P  S  Q  P  *  F  K  *  R  A  C  R  Y  L  V  H  Y  S  C  H  S  I  *  I  L  V  R  Q  E  E  L  I  E  I  K  F  F  F </second_frame>
            <third_frame>   I  L  S  Q  Y  L  E  L  F  C  I  *  C  C  L  E  G  G  *  *  Q  E  P  S  N  T  Y  L  G  N  L  M  L  *  T  S  V  G  D  F  S  G  L  L  F  K  K  M  L  Y  V  C  H  Y  P  F  T  V  R  V  K  *  L  K  C  C  S  K  T  F  S  L  G  T  Y  R  L  L  P  F  *  I  *  *  M  G  S  I  T  C  P  I  S  L  T  L  L  I  R  I  N  M  *  D  L  T  C  R  D  R  F  P  R  S  S  Y  A  Y  Q  W  Y  C  C  *  S  L  S  P  A  E  I  H  S  S  Q  G  Y  I  C  T  S  M  Y  H  S  F  L  Q  T  L  S  M  Q  F  I  L  S  E  Y  C  Y  C  I  D  V  F  Q  L  P  R  M  S  Q  K  D  A  I  A  R  Y  Y  G  L  E  K  G  Q  V  V  K  V  T  Y  S  S  E  I  I  E  T  H  V  T  Y  R  C  V  W  *  C  N  Y  V  N  L  S  Y  V  Q  L  N  E  S  A  A  S  S  L  A  N  L  P  Y  L  V  L  L  P  T  C  Y  L  N  F  F  L  N  P  W  G  S  S  L  L  N  L  S  S  N  E  E  L  V  G  I  *  Y  T  I  L  V  T  P  F  K  F  L  F  G  K  R  N  *  S  K  L  N  F  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="11708" stop="11361"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLIDCCLFKFDEWEALLALSLSHYLSESICRTLLVETGFRVHLMLINGIVADHSLQQKSIVHKAIYALQCTTLFFKHYQCSSFCLSIVIVLMFSSCHGCLRRMQLLGTMDLRRGR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="22257" PGL_stop="27394"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22257" e_stop="23114"/>
            <exon e_start="24395" e_stop="24582"/>
            <exon e_start="25035" e_stop="25124"/>
            <exon e_start="25219" e_stop="25405"/>
            <exon e_start="25493" e_stop="25690"/>
            <exon e_start="26693" e_stop="26880"/>
            <exon e_start="27034" e_stop="27394"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.926" e_score="0.989"/>
          <exon-intron don_prob="0.820" acc_prob="1.000" e_score="0.993"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.963" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.954" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="22257" e_stop="23114" e_length="858"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.926">
            <gDNA_intron_boundary i_start="23115" i_stop="24394" i_length="1280"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="24395" e_stop="24582" e_length="188"/>
          </exon>
          <intron i_serial="2" don_prob="0.820" acc_prob="1.000">
            <gDNA_intron_boundary i_start="24583" i_stop="25034" i_length="452"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25035" e_stop="25124" e_length="90"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="25125" i_stop="25218" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25219" e_stop="25405" e_length="187"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.963">
            <gDNA_intron_boundary i_start="25406" i_stop="25492" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="25493" e_stop="25690" e_length="198"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.954">
            <gDNA_intron_boundary i_start="25691" i_stop="26692" i_length="1002"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="26693" e_stop="26880" e_length="188"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="26881" i_stop="27033" i_length="153"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="27034" e_stop="27394" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22257" stop="23017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22295" stop="22819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268897" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22457" stop="23100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22459" stop="23114"/>
              <exon start="24395" stop="24505"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22459" stop="22866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22461" stop="22994"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22461" stop="22762"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323090" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22463" stop="23114"/>
              <exon start="24395" stop="24527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22490" stop="22840"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22491" stop="23114"/>
              <exon start="24395" stop="24479"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22491" stop="23025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E445060" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22491" stop="22924"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22494" stop="23114"/>
              <exon start="24395" stop="24486"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E407792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22501" stop="23114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730289" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22507" stop="23114"/>
              <exon start="24395" stop="24536"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731255" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22515" stop="23048"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314505" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22527" stop="23011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E475893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22541" stop="22975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E471826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22621" stop="22963"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256799" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24523" stop="24582"/>
              <exon start="25035" stop="25124"/>
              <exon start="25219" stop="25405"/>
              <exon start="25493" stop="25690"/>
              <exon start="26693" stop="26880"/>
              <exon start="27034" stop="27154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730974" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25239" stop="25405"/>
              <exon start="25493" stop="25690"/>
              <exon start="26693" stop="26880"/>
              <exon start="27034" stop="27394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701813" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25241" stop="25405"/>
              <exon start="25493" stop="25690"/>
              <exon start="26693" stop="26880"/>
              <exon start="27034" stop="27155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321429" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25372" stop="25405"/>
              <exon start="25493" stop="25690"/>
              <exon start="26693" stop="26880"/>
              <exon start="27034" stop="27118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340164" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25638" stop="25690"/>
              <exon start="26693" stop="26880"/>
              <exon start="27034" stop="27370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735086" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26704" stop="26880"/>
              <exon start="27034" stop="27370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202882" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26765" stop="26880"/>
              <exon start="27034" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26810" stop="26880"/>
              <exon start="27034" stop="27361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26852" stop="26880"/>
              <exon start="27034" stop="27368"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277357" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27071" stop="27370"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGAAATTCTTGGCTCTCCTCTTTGTTTCTTCCGCATGGGCTCATGGCCAGTGGCCTAGCAAGGACATACACAAATGTGTGGTCTATCAATCTTCGTATTTTGACTATTTCTTTTTACCTTTTCTTTTAAAAATAAATTCTGTCCATAAATTAATTGTAGAAGATGACACAACCAATGTGTTTGTTGTATATCTGAAAGCCACAAAACACTTTTCTAGTTTTATCAGTCACCACTTTTATTCTGTATTTGCATTTTAATGGAGTTCTGAAGATTTTTTATTTTTATTTTTTAAAAGAAGATTTGAACTTTTATTAACAAATTTAAGATTCAGCCATGCAAGCTGTCAAAGCTTCTTCCTTTTCACCATTTCACCTCAACTTGAACTCAACCAGTTCATTTCCCAAAACTACCAACTTGTATATTCAACAAAATTATGAAAACCCCATTTCTTGTTTTCCCTCAATTCAGACACAAAATGCAAAATTCAAGGTTTTTACTGCTACTTCCCCAAGTGTTTCAACAGAATCAGAAACCCCATTTGATGAAAAGACTGAAAATGAAAATCAAGAAGAGAAATTTGAGTGGTATGCTGAGTGGTACCCAATAATGCCAATTTGTGATCTTGATAAGAGGAGGCCACATGGAAAGAAAGTGATGGGGATTGATGTGGTTGTGTGGTGGGATAGGAATGAGAAAGAATGGAAAGTAATGGATGATTCTTGTCCTCATAGATATGCTCCACTTTCTGAAGGAAGAATTGATCAATGGGGAAGATTGCAGTGTGTGTATCATGGTTGGTGCTTTAATGGAGCTGGTGATTGTAAGTTGATCCCTCAAGCTCCTAGGGATGGCCCTCAG : GTTCATACGTCCAAAAGAGCTTGCGCAACTGTTTATCCAAGTTGTGTGCAAAATGACATTCTTTGGTTTTGGCCGAACTCTGATCCTCTATACAAGGACATATATTTGATGAAAAGGCCTCCCTATATACCTGAACTTGATGACAGTTCGTTTTCGAAAACTTTCATAGTCAGAGATATATCATATGG : GTATGAGCTTCTGATTGAAAACCTTATGGACCCAGCTCATGTCCAATATTCACATTATGGCATTATGAATGTTCCAGTAGCCCCCCAAAG : TGTGAAAGCTGATCGAGAAGGAGGAAGACCACTTGACATAACTATCACGAAGTTGGATGTAAATGTCATTACTGCAAACCAGGGACCTGGACGGAACACATTTGTTCCGCCTTGTGTGTATTATAGTTATTTTGCTTTCGGAGGATCTCAGGGAAAAACAACTGCTGTATCATCTGGAACTGTACAG : GAAAAACCTTCAGCTGAGAAGCAGAAAAAAGCACTTTTAGTTTTCATCTGTATTCCGGTTAGTCCAGGTCATAGCAGAATTATATTTGCATCTCCAAGAAACTTTGCCACTTGGGCAGATCGAATAATTCCACGTTGGATATTTCACCTGGGACAAAATCTAATTCTGGATTCTGATTTGTATCTTCTTCATGTGGAG : GAGCGCAAGCTAAAGGAAATTGGCTCTTACAATTGGCATAAAGCTTGCTATGTGCCAACAAAGGCAGATGCCATTGTTGTTGCTTTTAGAAGGTGGCTAAACAAATATGCAGGTGGTCAAGTTGATTGGCGTGGAAAGTACAATGGAGACCTCCCGCCAACTCCTCCAAGGGAGCAGCTGCTGGACAG : GTATTGGACTCATACAGTGAGTTGCACAAGTTGCAATCTCGCATATAAAAGTCTCAATGCTCTTGAAGTCGTACTGCAGATCGTCTCCATTGGTGCCATTGGAATTGTTGCTGCTTTAAAGCAGGGCACATTGTCTGCGGTGACAAGGTATTCCTTGGTCACCGTTGCATTACTATGCTTCGTGGCCTCGAGATGGTTATCTCATTTCATATACAAAAATTTCCATTTCCACGATTACGACCATGCCTTTCGTTAACACTTGAGTACTTTCATATGACTGAACATTCACTGTATAAACATATTCCTTGTAGTTGAAATTTGCAGAAAAGTTTGTTAAATGATCTGTTGGGGTGGGCATGTT</gDNA_template>
            <first_frame> *  N  S  W  L  S  S  L  F  L  P  H  G  L  M  A  S  G  L  A  R  T  Y  T  N  V  W  S  I  N  L  R  I  L  T  I  S  F  Y  L  F  F  *  K  *  I  L  S  I  N  *  L  *  K  M  T  Q  P  M  C  L  L  Y  I  *  K  P  Q  N  T  F  L  V  L  S  V  T  T  F  I  L  Y  L  H  F  N  G  V  L  K  I  F  Y  F  Y  F  L  K  E  D  L  N  F  Y  *  Q  I  *  D  S  A  M  Q  A  V  K  A  S  S  F  S  P  F  H  L  N  L  N  S  T  S  S  F  P  K  T  T  N  L  Y  I  Q  Q  N  Y  E  N  P  I  S  C  F  P  S  I  Q  T  Q  N  A  K  F  K  V  F  T  A  T  S  P  S  V  S  T  E  S  E  T  P  F  D  E  K  T  E  N  E  N  Q  E  E  K  F  E  W  Y  A  E  W  Y  P  I  M  P  I  C  D  L  D  K  R  R  P  H  G  K  K  V  M  G  I  D  V  V  V  W  W  D  R  N  E  K  E  W  K  V  M  D  D  S  C  P  H  R  Y  A  P  L  S  E  G  R  I  D  Q  W  G  R  L  Q  C  V  Y  H  G  W  C  F  N  G  A  G  D  C  K  L  I  P  Q  A  P  R  D  G  P  Q  :  V  H  T  S  K  R  A  C  A  T  V  Y  P  S  C  V  Q  N  D  I  L  W  F  W  P  N  S  D  P  L  Y  K  D  I  Y  L  M  K  R  P  P  Y  I  P  E  L  D  D  S  S  F  S  K  T  F  I  V  R  D  I  S  Y  G :   Y  E  L  L  I  E  N  L  M  D  P  A  H  V  Q  Y  S  H  Y  G  I  M  N  V  P  V  A  P  Q  S :   V  K  A  D  R  E  G  G  R  P  L  D  I  T  I  T  K  L  D  V  N  V  I  T  A  N  Q  G  P  G  R  N  T  F  V  P  P  C  V  Y  Y  S  Y  F  A  F  G  G  S  Q  G  K  T  T  A  V  S  S  G  T  V  Q  :  E  K  P  S  A  E  K  Q  K  K  A  L  L  V  F  I  C  I  P  V  S  P  G  H  S  R  I  I  F  A  S  P  R  N  F  A  T  W  A  D  R  I  I  P  R  W  I  F  H  L  G  Q  N  L  I  L  D  S  D  L  Y  L  L  H  V  E  :  E  R  K  L  K  E  I  G  S  Y  N  W  H  K  A  C  Y  V  P  T  K  A  D  A  I  V  V  A  F  R  R  W  L  N  K  Y  A  G  G  Q  V  D  W  R  G  K  Y  N  G  D  L  P  P  T  P  P  R  E  Q  L  L  D  R :   Y  W  T  H  T  V  S  C  T  S  C  N  L  A  Y  K  S  L  N  A  L  E  V  V  L  Q  I  V  S  I  G  A  I  G  I  V  A  A  L  K  Q  G  T  L  S  A  V  T  R  Y  S  L  V  T  V  A  L  L  C  F  V  A  S  R  W  L  S  H  F  I  Y  K  N  F  H  F  H  D  Y  D  H  A  F  R  *  H  L  S  T  F  I  *  L  N  I  H  C  I  N  I  F  L  V  V  E  I  C  R  K  V  C  *  M  I  C  W  G  G  H  V </first_frame>
            <second_frame>  E  I  L  G  S  P  L  C  F  F  R  M  G  S  W  P  V  A  *  Q  G  H  T  Q  M  C  G  L  S  I  F  V  F  *  L  F  L  F  T  F  S  F  K  N  K  F  C  P  *  I  N  C  R  R  *  H  N  Q  C  V  C  C  I  S  E  S  H  K  T  L  F  *  F  Y  Q  S  P  L  L  F  C  I  C  I  L  M  E  F  *  R  F  F  I  F  I  F  *  K  K  I  *  T  F  I  N  K  F  K  I  Q  P  C  K  L  S  K  L  L  P  F  H  H  F  T  S  T  *  T  Q  P  V  H  F  P  K  L  P  T  C  I  F  N  K  I  M  K  T  P  F  L  V  F  P  Q  F  R  H  K  M  Q  N  S  R  F  L  L  L  L  P  Q  V  F  Q  Q  N  Q  K  P  H  L  M  K  R  L  K  M  K  I  K  K  R  N  L  S  G  M  L  S  G  T  Q  *  C  Q  F  V  I  L  I  R  G  G  H  M  E  R  K  *  W  G  L  M  W  L  C  G  G  I  G  M  R  K  N  G  K  *  W  M  I  L  V  L  I  D  M  L  H  F  L  K  E  E  L  I  N  G  E  D  C  S  V  C  I  M  V  G  A  L  M  E  L  V  I  V  S  *  S  L  K  L  L  G  M  A  L  R :   F  I  R  P  K  E  L  A  Q  L  F  I  Q  V  V  C  K  M  T  F  F  G  F  G  R  T  L  I  L  Y  T  R  T  Y  I  *  *  K  G  L  P  I  Y  L  N  L  M  T  V  R  F  R  K  L  S  *  S  E  I  Y  H  M   : G  M  S  F  *  L  K  T  L  W  T  Q  L  M  S  N  I  H  I  M  A  L  *  M  F  Q  *  P  P  K   : V  *  K  L  I  E  K  E  E  D  H  L  T  *  L  S  R  S  W  M  *  M  S  L  L  Q  T  R  D  L  D  G  T  H  L  F  R  L  V  C  I  I  V  I  L  L  S  E  D  L  R  E  K  Q  L  L  Y  H  L  E  L  Y  R :   K  N  L  Q  L  R  S  R  K  K  H  F  *  F  S  S  V  F  R  L  V  Q  V  I  A  E  L  Y  L  H  L  Q  E  T  L  P  L  G  Q  I  E  *  F  H  V  G  Y  F  T  W  D  K  I  *  F  W  I  L  I  C  I  F  F  M  W  R :   S  A  S  *  R  K  L  A  L  T  I  G  I  K  L  A  M  C  Q  Q  R  Q  M  P  L  L  L  L  L  E  G  G  *  T  N  M  Q  V  V  K  L  I  G  V  E  S  T  M  E  T  S  R  Q  L  L  Q  G  S  S  C  W  T   : G  I  G  L  I  Q  *  V  A  Q  V  A  I  S  H  I  K  V  S  M  L  L  K  S  Y  C  R  S  S  P  L  V  P  L  E  L  L  L  L  *  S  R  A  H  C  L  R  *  Q  G  I  P  W  S  P  L  H  Y  Y  A  S  W  P  R  D  G  Y  L  I  S  Y  T  K  I  S  I  S  T  I  T  T  M  P  F  V  N  T  *  V  L  S  Y  D  *  T  F  T  V  *  T  Y  S  L  *  L  K  F  A  E  K  F  V  K  *  S  V  G  V  G  M   </second_frame>
            <third_frame>   K  F  L  A  L  L  F  V  S  S  A  W  A  H  G  Q  W  P  S  K  D  I  H  K  C  V  V  Y  Q  S  S  Y  F  D  Y  F  F  L  P  F  L  L  K  I  N  S  V  H  K  L  I  V  E  D  D  T  T  N  V  F  V  V  Y  L  K  A  T  K  H  F  S  S  F  I  S  H  H  F  Y  S  V  F  A  F  *  W  S  S  E  D  F  L  F  L  F  F  K  R  R  F  E  L  L  L  T  N  L  R  F  S  H  A  S  C  Q  S  F  F  L  F  T  I  S  P  Q  L  E  L  N  Q  F  I  S  Q  N  Y  Q  L  V  Y  S  T  K  L  *  K  P  H  F  L  F  S  L  N  S  D  T  K  C  K  I  Q  G  F  Y  C  Y  F  P  K  C  F  N  R  I  R  N  P  I  *  *  K  D  *  K  *  K  S  R  R  E  I  *  V  V  C  *  V  V  P  N  N  A  N  L  *  S  *  *  E  E  A  T  W  K  E  S  D  G  D  *  C  G  C  V  V  G  *  E  *  E  R  M  E  S  N  G  *  F  L  S  S  *  I  C  S  T  F  *  R  K  N  *  S  M  G  K  I  A  V  C  V  S  W  L  V  L  *  W  S  W  *  L  *  V  D  P  S  S  S  *  G  W  P  S   : G  S  Y  V  Q  K  S  L  R  N  C  L  S  K  L  C  A  K  *  H  S  L  V  L  A  E  L  *  S  S  I  Q  G  H  I  F  D  E  K  A  S  L  Y  T  *  T  *  *  Q  F  V  F  E  N  F  H  S  Q  R  Y  I  I  W  :  V  *  A  S  D  *  K  P  Y  G  P  S  S  C  P  I  F  T  L  W  H  Y  E  C  S  S  S  P  P  K  :  C  E  S  *  S  R  R  R  K  T  T  *  H  N  Y  H  E  V  G  C  K  C  H  Y  C  K  P  G  T  W  T  E  H  I  C  S  A  L  C  V  L  *  L  F  C  F  R  R  I  S  G  K  N  N  C  C  I  I  W  N  C  T   : G  K  T  F  S  *  E  A  E  K  S  T  F  S  F  H  L  Y  S  G  *  S  R  S  *  Q  N  Y  I  C  I  S  K  K  L  C  H  L  G  R  S  N  N  S  T  L  D  I  S  P  G  T  K  S  N  S  G  F  *  F  V  S  S  S  C  G   : G  A  Q  A  K  G  N  W  L  L  Q  L  A  *  S  L  L  C  A  N  K  G  R  C  H  C  C  C  F  *  K  V  A  K  Q  I  C  R  W  S  S  *  L  A  W  K  V  Q  W  R  P  P  A  N  S  S  K  G  A  A  A  G  Q  :  V  L  D  S  Y  S  E  L  H  K  L  Q  S  R  I  *  K  S  Q  C  S  *  S  R  T  A  D  R  L  H  W  C  H  W  N  C  C  C  F  K  A  G  H  I  V  C  G  D  K  V  F  L  G  H  R  C  I  T  M  L  R  G  L  E  M  V  I  S  F  H  I  Q  K  F  P  F  P  R  L  R  P  C  L  S  L  T  L  E  Y  F  H  M  T  E  H  S  L  Y  K  H  I  P  C  S  *  N  L  Q  K  S  L  L  N  D  L  L  G  W  A  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22581" stop="23114"/>
                    <exon start="24395" stop="24582"/>
                    <exon start="25035" stop="25124"/>
                    <exon start="25219" stop="25405"/>
                    <exon start="25493" stop="25690"/>
                    <exon start="26693" stop="26880"/>
                    <exon start="27034" stop="27289"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1638</number_coding_nucleotides>
                  <number_encoded_amino_acids>546</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DSAMQAVKASSFSPFHLNLNSTSSFPKTTNLYIQQNYENPISCFPSIQTQNAKFKVFTATSPSVSTESETPFDEKTENENQEEKFEWYAEWYPIMPICDLDKRRPHGKKVMGIDVVVWWDRNEKEWKVMDDSCPHRYAPLSEGRIDQWGRLQCVYHGWCFNGAGDCKLIPQAPRDGPQVHTSKRACATVYPSCVQNDILWFWPNSDPLYKDIYLMKRPPYIPELDDSSFSKTFIVRDISYGYELLIENLMDPAHVQYSHYGIMNVPVAPQSVKADREGGRPLDITITKLDVNVITANQGPGRNTFVPPCVYYSYFAFGGSQGKTTAVSSGTVQEKPSAEKQKKALLVFICIPVSPGHSRIIFASPRNFATWADRIIPRWIFHLGQNLILDSDLYLLHVEERKLKEIGSYNWHKACYVPTKADAIVVAFRRWLNKYAGGQVDWRGKYNGDLPPTPPREQLLDRYWTHTVSCTSCNLAYKSLNALEVVLQIVSIGAIGIVAALKQGTLSAVTRYSLVTVALLCFVASRWLSHFIYKNFHFHDYDHAFR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22259" stop="22513"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KFLALLFVSSAWAHGQWPSKDIHKCVVYQSSYFDYFFLPFLLKINSVHKLIVEDDTTNVFVVYLKATKHFSSFISHHFYSVFAF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="68827" PGL_stop="68130"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68827" e_stop="68568"/>
            <exon e_start="68410" e_stop="68130"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.954"/>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.954">
            <gDNA_exon_boundary e_start="68827" e_stop="68568" e_length="260"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="68567" i_stop="68411" i_length="157"/>
          </intron>
          <exon e_serial="2" e_score="0.915">
            <gDNA_exon_boundary e_start="68410" e_stop="68130" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68827" stop="68568"/>
              <exon start="68410" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68827" stop="68568"/>
              <exon start="68410" stop="68130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689001" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACTCTACTGTCAGCGAATCAATCCACAACAAGAAAGTACACGAAGAAAAAATGTGTTTATTAAGAAGTAGGAAGATCAGAAAATTCGTTAGTAAATATTCTGAAGACTGAATGGTATTTATAGGCAAGAATATATATTCTGAAAGGTGGCAACCCTTTCAGAATTGACACAACCATTAATGAAAGGTTGCAAACTTTCAAATGGTATTGACTGTTCCTGAAAGTTGCAACCTTTCAGAACAGTGGCAGGAATTTTTAA : AATTATCTCTCGATCGATCATTTGCCAAAGCCAAAGTCAAAGCCAAAGCGAGCGACGACGACGACGCGAGGGGGGGTCCCTCTTTCCAACTCTTTTAATAATTAATAGGAGTGTTTATTTATTTAAACTCTCCTATTTTCATTTCCATTACCGATGAGGGACTATTGCCTTTTTTATTAAAGCATTAGAGGACTTTTCAAGTTACTAACCTTTCAAGTTCTAAACTTTTCAAATTCCTCTCCTTCCCTCTATTTTCCATCAATTCTTGCTACATACCCAAC</gDNA_template>
            <first_frame> K  L  Y  C  Q  R  I  N  P  Q  Q  E  S  T  R  R  K  N  V  F  I  K  K  *  E  D  Q  K  I  R  *  *  I  F  *  R  L  N  G  I  Y  R  Q  E  Y  I  F  *  K  V  A  T  L  S  E  L  T  Q  P  L  M  K  G  C  K  L  S  N  G  I  D  C  S  *  K  L  Q  P  F  R  T  V  A  G  I  F  K :   I  I  S  R  S  I  I  C  Q  S  Q  S  Q  S  Q  S  E  R  R  R  R  R  E  G  G  S  L  F  P  T  L  L  I  I  N  R  S  V  Y  L  F  K  L  S  Y  F  H  F  H  Y  R  *  G  T  I  A  F  F  I  K  A  L  E  D  F  S  S  Y  *  P  F  K  F  *  T  F  Q  I  P  L  L  P  S  I  F  H  Q  F  L  L  H  T  Q  </first_frame>
            <second_frame>  N  S  T  V  S  E  S  I  H  N  K  K  V  H  E  E  K  M  C  L  L  R  S  R  K  I  R  K  F  V  S  K  Y  S  E  D  *  M  V  F  I  G  K  N  I  Y  S  E  R  W  Q  P  F  Q  N  *  H  N  H  *  *  K  V  A  N  F  Q  M  V  L  T  V  P  E  S  C  N  L  S  E  Q  W  Q  E  F  L   : K  L  S  L  D  R  S  F  A  K  A  K  V  K  A  K  A  S  D  D  D  D  A  R  G  G  P  S  F  Q  L  F  *  *  L  I  G  V  F  I  Y  L  N  S  P  I  F  I  S  I  T  D  E  G  L  L  P  F  L  L  K  H  *  R  T  F  Q  V  T  N  L  S  S  S  K  L  F  K  F  L  S  F  P  L  F  S  I  N  S  C  Y  I  P  N </second_frame>
            <third_frame>   T  L  L  S  A  N  Q  S  T  T  R  K  Y  T  K  K  K  C  V  Y  *  E  V  G  R  S  E  N  S  L  V  N  I  L  K  T  E  W  Y  L  *  A  R  I  Y  I  L  K  G  G  N  P  F  R  I  D  T  T  I  N  E  R  L  Q  T  F  K  W  Y  *  L  F  L  K  V  A  T  F  Q  N  S  G  R  N  F  *  :  N  Y  L  S  I  D  H  L  P  K  P  K  S  K  P  K  R  A  T  T  T  T  R  G  G  V  P  L  S  N  S  F  N  N  *  *  E  C  L  F  I  *  T  L  L  F  S  F  P  L  P  M  R  D  Y  C  L  F  Y  *  S  I  R  G  L  F  K  L  L  T  F  Q  V  L  N  F  S  N  S  S  P  S  L  Y  F  P  S  I  L  A  T  Y  P   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68605" stop="68568"/>
                    <exon start="68410" stop="68254"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLQPFRTVAGIFKIISRSIICQSQSQSQSERRRRREGGSLFPTLLIINRSVYLFKLSYFHFHYR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="78304" PGL_stop="77579"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78304" e_stop="77579"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="78304" e_stop="77579" e_length="726"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78304" stop="77819"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77878" stop="77579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCCACAATACACCCGCAACCACCACCCACACTCACAACCAACCCGAACCACTCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCAGCCACCCCCGAATCACCACCGCTCGTGTCACCCCCCAATACTCATCCCATGTTAACCCGTTGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACGCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGACACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTTCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGCAAGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACACACGTCTGAAAACGTT</gDNA_template>
            <first_frame> S  P  T  I  H  P  Q  P  P  P  T  L  T  T  N  P  N  H  S  I  P  T  T  S  P  A  R  S  V  L  G  P  S  Q  P  P  P  N  H  H  R  S  C  H  P  P  I  L  I  P  C  *  P  V  A  K  P  V  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  A  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  D  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  S  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  A  R  N  H  S  P  G  T  V  T  R  R  A  Q  Q  L  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  A  S  P  P  C  L  V  H  T  S  E  N  V </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  S  H  P  R  I  T  T  A  R  V  T  P  Q  Y  S  S  H  V  N  P  L  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  T  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  Q  E  T  I  R  L  V  L  S  L  A  V  R  N  N  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  G  L  K  Q  A  P  R  A  W  Y  T  R  L  K  T   </second_frame>
            <third_frame>   T  H  N  T  P  A  T  T  T  H  T  H  N  Q  P  E  P  L  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  T  P  E  S  P  P  L  V  S  P  P  N  T  H  P  M  L  T  R  C  K  A  G  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  R  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  F  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  K  K  P  F  A  W  Y  C  H  S  P  C  A  T  I  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  S  R  S  L  C  M  G  S  S  K  P  P  V  L  G  T  H  V  *  K  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78302" stop="77694"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>606</number_coding_nucleotides>
                  <number_encoded_amino_acids>202</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNTPATTTHTHNQPEPLHTHNISSPIRFGSFPATPESPPLVSPPNTHPMLTRCKAGIFKPKTFQATILPNTRLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSIFRYKARLVAKGYNQEYGLDYSETFSPVIRKKPFAWYCHSPCATIGSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="84050" PGL_stop="85345"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="84050" e_stop="85345"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="84050" e_stop="85345" e_length="1296"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84050" stop="84772"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212480" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84325" stop="85072"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E697288" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84346" stop="84906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84432" stop="85155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84432" stop="84906"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84501" stop="84970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204442" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84623" stop="85341"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374643" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84700" stop="85345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="84700" stop="85345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357352" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATCACAAACCAAAATGGGAGGTGGTGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATCCAAGCCCCCTTTTATACTTAGTGAACTCAAGAAGGCTATTCCTCCTCATTGCTTTCAACGATCTCTCGTTCGCTCCTTTTCCTACGTTGTTCGGGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCTCCATATAATTACCTAGGATGGCCTATTTATTGGTTTTCCCTAGGAAGTGTTTTCACAGCAATGTGGGTCATTGCTCATGAATGTGGCCATCATGGCTTTAGTAATTACCAATGGATAGATGACACGGTTGGTTTTATCTTCTATACCTCAATTTGTGTCCCTTACTTTTCTTGGAAATACAGTCATCGTCGTCATCACTCCAATGCAGGTTCGCTTGAATATGATGAAGTCTACGTACCTAGGCTTAAATCCGAATTACGTTGGTTCTCTAAATATTTCGACAATCTACCAGGACGAATAATCGCGTTCACCACCACCCTCACGGTTGGTTGGCCTTCTTACATGGCCATCAATGCCTCCGGTAGACCTTATGATCGTTTTGCAAGTCACTATAATCCATATAGTCCAATGTATAACAATCGTGAGAGGCTACTTATCTACTTCTCAGACTTAGGTCTAATTGCATTTATTTATATGTGGTATCGTATCGCGATGGTAAAAGGGCTAGCTTGGGTTGTATGTATGTATGTAGCACCCCTTGAAATTATGAACATACTAGTAGTGGTACTAACTTTTTTGAACCACACACATGCATTAGTCCCACATTATGATTCTTCAGAATGGGATTGGCTAAGAGGAGCTTTAGCTACTGTAGATAGAGACTTTGGTCCACTAAATAATATATGTCATAATGTTACAAATACTCATGTTTTGCATCATTTATTCACAACCATACCACATTATCATGCAGTGGAGGCAACAAAAGCTATCAAGCCAATACTTGGAGATTACTATAATTTTGATAGTACACCAGTTTATAAAGCAATATGGAAGAATATAAATGAGTGTATCTATGTGGAGAAAAATGAAGAAACTCAAGATAGAGGTGTTTTTTGGTATAAAAACAAACTCTAAAAGATGAATGTAAGCATTTAATTATTACTTGTAATTTGGCTAAATGTTAAGCCTTAATAATTTGTTATGGTTTAATTAAGGTTTACTTATAGCTTGTAATAATTGGATTGTTGCATTTAGAAATCTCCCTAATAAATCATAATCACTCTGTCC</gDNA_template>
            <first_frame> L  S  Q  T  K  M  G  G  G  G  N  M  T  K  I  E  Q  K  I  K  V  P  L  S  K  P  P  F  I  L  S  E  L  K  K  A  I  P  P  H  C  F  Q  R  S  L  V  R  S  F  S  Y  V  V  R  D  I  T  L  V  F  V  L  G  Y  I  A  A  N  Y  I  Y  V  L  P  S  P  Y  N  Y  L  G  W  P  I  Y  W  F  S  L  G  S  V  F  T  A  M  W  V  I  A  H  E  C  G  H  H  G  F  S  N  Y  Q  W  I  D  D  T  V  G  F  I  F  Y  T  S  I  C  V  P  Y  F  S  W  K  Y  S  H  R  R  H  H  S  N  A  G  S  L  E  Y  D  E  V  Y  V  P  R  L  K  S  E  L  R  W  F  S  K  Y  F  D  N  L  P  G  R  I  I  A  F  T  T  T  L  T  V  G  W  P  S  Y  M  A  I  N  A  S  G  R  P  Y  D  R  F  A  S  H  Y  N  P  Y  S  P  M  Y  N  N  R  E  R  L  L  I  Y  F  S  D  L  G  L  I  A  F  I  Y  M  W  Y  R  I  A  M  V  K  G  L  A  W  V  V  C  M  Y  V  A  P  L  E  I  M  N  I  L  V  V  V  L  T  F  L  N  H  T  H  A  L  V  P  H  Y  D  S  S  E  W  D  W  L  R  G  A  L  A  T  V  D  R  D  F  G  P  L  N  N  I  C  H  N  V  T  N  T  H  V  L  H  H  L  F  T  T  I  P  H  Y  H  A  V  E  A  T  K  A  I  K  P  I  L  G  D  Y  Y  N  F  D  S  T  P  V  Y  K  A  I  W  K  N  I  N  E  C  I  Y  V  E  K  N  E  E  T  Q  D  R  G  V  F  W  Y  K  N  K  L  *  K  M  N  V  S  I  *  L  L  L  V  I  W  L  N  V  K  P  *  *  F  V  M  V  *  L  R  F  T  Y  S  L  *  *  L  D  C  C  I  *  K  S  P  *  *  I  I  I  T  L  S </first_frame>
            <second_frame>  Y  H  K  P  K  W  E  V  V  V  I  *  L  K  L  N  K  R  L  K  Y  H  Y  P  S  P  L  L  Y  L  V  N  S  R  R  L  F  L  L  I  A  F  N  D  L  S  F  A  P  F  P  T  L  F  G  I  S  H  *  C  L  Y  *  G  I  S  L  R  I  T  S  M  S  F  H  L  H  I  I  T  *  D  G  L  F  I  G  F  P  *  E  V  F  S  Q  Q  C  G  S  L  L  M  N  V  A  I  M  A  L  V  I  T  N  G  *  M  T  R  L  V  L  S  S  I  P  Q  F  V  S  L  T  F  L  G  N  T  V  I  V  V  I  T  P  M  Q  V  R  L  N  M  M  K  S  T  Y  L  G  L  N  P  N  Y  V  G  S  L  N  I  S  T  I  Y  Q  D  E  *  S  R  S  P  P  P  S  R  L  V  G  L  L  T  W  P  S  M  P  P  V  D  L  M  I  V  L  Q  V  T  I  I  H  I  V  Q  C  I  T  I  V  R  G  Y  L  S  T  S  Q  T  *  V  *  L  H  L  F  I  C  G  I  V  S  R  W  *  K  G  *  L  G  L  Y  V  C  M  *  H  P  L  K  L  *  T  Y  *  *  W  Y  *  L  F  *  T  T  H  M  H  *  S  H  I  M  I  L  Q  N  G  I  G  *  E  E  L  *  L  L  *  I  E  T  L  V  H  *  I  I  Y  V  I  M  L  Q  I  L  M  F  C  I  I  Y  S  Q  P  Y  H  I  I  M  Q  W  R  Q  Q  K  L  S  S  Q  Y  L  E  I  T  I  I  L  I  V  H  Q  F  I  K  Q  Y  G  R  I  *  M  S  V  S  M  W  R  K  M  K  K  L  K  I  E  V  F  F  G  I  K  T  N  S  K  R  *  M  *  A  F  N  Y  Y  L  *  F  G  *  M  L  S  L  N  N  L  L  W  F  N  *  G  L  L  I  A  C  N  N  W  I  V  A  F  R  N  L  P  N  K  S  *  S  L  C   </second_frame>
            <third_frame>   I  T  N  Q  N  G  R  W  W  *  Y  D  *  N  *  T  K  D  *  S  T  T  I  Q  A  P  F  Y  T  *  *  T  Q  E  G  Y  S  S  S  L  L  S  T  I  S  R  S  L  L  F  L  R  C  S  G  Y  H  T  S  V  C  I  R  V  Y  R  C  E  L  H  L  C  P  S  I  S  I  *  L  P  R  M  A  Y  L  L  V  F  P  R  K  C  F  H  S  N  V  G  H  C  S  *  M  W  P  S  W  L  *  *  L  P  M  D  R  *  H  G  W  F  Y  L  L  Y  L  N  L  C  P  L  L  F  L  E  I  Q  S  S  S  S  S  L  Q  C  R  F  A  *  I  *  *  S  L  R  T  *  A  *  I  R  I  T  L  V  L  *  I  F  R  Q  S  T  R  T  N  N  R  V  H  H  H  P  H  G  W  L  A  F  L  H  G  H  Q  C  L  R  *  T  L  *  S  F  C  K  S  L  *  S  I  *  S  N  V  *  Q  S  *  E  A  T  Y  L  L  L  R  L  R  S  N  C  I  Y  L  Y  V  V  S  Y  R  D  G  K  R  A  S  L  G  C  M  Y  V  C  S  T  P  *  N  Y  E  H  T  S  S  G  T  N  F  F  E  P  H  T  C  I  S  P  T  L  *  F  F  R  M  G  L  A  K  R  S  F  S  Y  C  R  *  R  L  W  S  T  K  *  Y  M  S  *  C  Y  K  Y  S  C  F  A  S  F  I  H  N  H  T  T  L  S  C  S  G  G  N  K  S  Y  Q  A  N  T  W  R  L  L  *  F  *  *  Y  T  S  L  *  S  N  M  E  E  Y  K  *  V  Y  L  C  G  E  K  *  R  N  S  R  *  R  C  F  L  V  *  K  Q  T  L  K  D  E  C  K  H  L  I  I  T  C  N  L  A  K  C  *  A  L  I  I  C  Y  G  L  I  K  V  Y  L  *  L  V  I  I  G  L  L  H  L  E  I  S  L  I  N  H  N  H  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="84050" stop="85192"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1140</number_coding_nucleotides>
                  <number_encoded_amino_acids>380</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LSQTKMGGGGNMTKIEQKIKVPLSKPPFILSELKKAIPPHCFQRSLVRSFSYVVRDITLVFVLGYIAANYIYVLPSPYNYLGWPIYWFSLGSVFTAMWVIAHECGHHGFSNYQWIDDTVGFIFYTSICVPYFSWKYSHRRHHSNAGSLEYDEVYVPRLKSELRWFSKYFDNLPGRIIAFTTTLTVGWPSYMAINASGRPYDRFASHYNPYSPMYNNRERLLIYFSDLGLIAFIYMWYRIAMVKGLAWVVCMYVAPLEIMNILVVVLTFLNHTHALVPHYDSSEWDWLRGALATVDRDFGPLNNICHNVTNTHVLHHLFTTIPHYHAVEATKAIKPILGDYYNFDSTPVYKAIWKNINECIYVEKNEETQDRGVFWYKNKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="92916" PGL_stop="93404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92916" e_stop="93404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92916" e_stop="93404" e_length="489"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92916" stop="93404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E305420" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTAATATGACTAAAATTGAACAAAAGATTAAAGTACCACTATTAAAGCCCCCTTTTAAACTTAGTGAACTCAAGAAGGCTATTCCTCCTCACTGCTTTCAACGATCTCTCGTTCGCTCCTTCTCCTACGTTGTTCGTGATATCACACTAGTGTTTGTATTAGGGTATATCGCTGCGAATTACATCTATGTCCTTCCATCCCCATATTATTACCTAGCATGGCCTATTTATTGGTTTGCTCTAGGTAGTGCTTTCACAGGAATATGGGTCCTTGCTCATGAATGTGGCCACCATGGCTTTAGTAATTATCAATGGATAGATGACACGGTTGGTTTTATCTTATATACCTCGATTTGTGTGCCTTACTTTTCTTGGAAACGTACTCATCATCGTCATCACTCCAATACTGGTTCCCTTGAATATGATGAAGTCTATGTACCTAGGCTTAAATCCGAACTACAATGGTTCTCCAAATATTTCAACAATCT</gDNA_template>
            <first_frame> W  *  Y  D  *  N  *  T  K  D  *  S  T  T  I  K  A  P  F  *  T  *  *  T  Q  E  G  Y  S  S  S  L  L  S  T  I  S  R  S  L  L  L  L  R  C  S  *  Y  H  T  S  V  C  I  R  V  Y  R  C  E  L  H  L  C  P  S  I  P  I  L  L  P  S  M  A  Y  L  L  V  C  S  R  *  C  F  H  R  N  M  G  P  C  S  *  M  W  P  P  W  L  *  *  L  S  M  D  R  *  H  G  W  F  Y  L  I  Y  L  D  L  C  A  L  L  F  L  E  T  Y  S  S  S  S  S  L  Q  Y  W  F  P  *  I  *  *  S  L  C  T  *  A  *  I  R  T  T  M  V  L  Q  I  F  Q  Q  S </first_frame>
            <second_frame>  G  N  M  T  K  I  E  Q  K  I  K  V  P  L  L  K  P  P  F  K  L  S  E  L  K  K  A  I  P  P  H  C  F  Q  R  S  L  V  R  S  F  S  Y  V  V  R  D  I  T  L  V  F  V  L  G  Y  I  A  A  N  Y  I  Y  V  L  P  S  P  Y  Y  Y  L  A  W  P  I  Y  W  F  A  L  G  S  A  F  T  G  I  W  V  L  A  H  E  C  G  H  H  G  F  S  N  Y  Q  W  I  D  D  T  V  G  F  I  L  Y  T  S  I  C  V  P  Y  F  S  W  K  R  T  H  H  R  H  H  S  N  T  G  S  L  E  Y  D  E  V  Y  V  P  R  L  K  S  E  L  Q  W  F  S  K  Y  F  N  N   </second_frame>
            <third_frame>   V  I  *  L  K  L  N  K  R  L  K  Y  H  Y  *  S  P  L  L  N  L  V  N  S  R  R  L  F  L  L  T  A  F  N  D  L  S  F  A  P  S  P  T  L  F  V  I  S  H  *  C  L  Y  *  G  I  S  L  R  I  T  S  M  S  F  H  P  H  I  I  T  *  H  G  L  F  I  G  L  L  *  V  V  L  S  Q  E  Y  G  S  L  L  M  N  V  A  T  M  A  L  V  I  I  N  G  *  M  T  R  L  V  L  S  Y  I  P  R  F  V  C  L  T  F  L  G  N  V  L  I  I  V  I  T  P  I  L  V  P  L  N  M  M  K  S  M  Y  L  G  L  N  P  N  Y  N  G  S  P  N  I  S  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92917" stop="93402"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>486</number_coding_nucleotides>
                  <number_encoded_amino_acids>162</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNMTKIEQKIKVPLLKPPFKLSELKKAIPPHCFQRSLVRSFSYVVRDITLVFVLGYIAANYIYVLPSPYYYLAWPIYWFALGSAFTGIWVLAHECGHHGFSNYQWIDDTVGFILYTSICVPYFSWKRTHHRHHSNTGSLEYDEVYVPRLKSELQWFSKYFNN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="94077" PGL_stop="93516"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94077" e_stop="93516"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="94077" e_stop="93516" e_length="562"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94077" stop="93516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306525" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAGCCAAATTACAAGCAATAATAAAATGCTTACGTTCATCTTTTAGAGTTTGTTTTTATACCAAAAAACACCTCTATCTTGAGTTTCTTCCTTTTTTTCCACATAGATGCACTCATTTATATTCTTCCATATCGCTTTATAAACTGGTGTACTATCAAAATTATAGTAATCTCCAAGTATTGGCTTGATAGCTTTTGTTGCCTCCATTGCATGATAATGTGGTATGGTTGTGAATAAATGATGCAAAACATGAGTATCTGTAACGTTATGAAAAACGTTAGTTAGTATACCAAAGTCTCTATCTACAGTAGCTAGAGTTCCTCTTAGCCAATCCCATTCTGAAGAATCATAATGTGGGACTAATGCATGTGTGTGGTTCAAATAAGTTAGTACCACTACTAGTATGCTCATTATTTGAAGGGGCGCTACATACATGCATACAACCCAAGCTAGCCCTTTTACCATCGCGATTCGATACCACATATAAATCATTGAAATTAGACCCAAGTCTGACAAGTATATTAGTAGCCTCTCACTATCATTATACATTGGACTATAT</gDNA_template>
            <first_frame> I  *  P  N  Y  K  Q  *  *  N  A  Y  V  H  L  L  E  F  V  F  I  P  K  N  T  S  I  L  S  F  F  L  F  F  H  I  D  A  L  I  Y  I  L  P  Y  R  F  I  N  W  C  T  I  K  I  I  V  I  S  K  Y  W  L  D  S  F  C  C  L  H  C  M  I  M  W  Y  G  C  E  *  M  M  Q  N  M  S  I  C  N  V  M  K  N  V  S  *  Y  T  K  V  S  I  Y  S  S  *  S  S  S  *  P  I  P  F  *  R  I  I  M  W  D  *  C  M  C  V  V  Q  I  S  *  Y  H  Y  *  Y  A  H  Y  L  K  G  R  Y  I  H  A  Y  N  P  S  *  P  F  Y  H  R  D  S  I  P  H  I  N  H  *  N  *  T  Q  V  *  Q  V  Y  *  *  P  L  T  I  I  I  H  W  T  I  </first_frame>
            <second_frame>  F  S  Q  I  T  S  N  N  K  M  L  T  F  I  F  *  S  L  F  L  Y  Q  K  T  P  L  S  *  V  S  S  F  F  S  T  *  M  H  S  F  I  F  F  H  I  A  L  *  T  G  V  L  S  K  L  *  *  S  P  S  I  G  L  I  A  F  V  A  S  I  A  *  *  C  G  M  V  V  N  K  *  C  K  T  *  V  S  V  T  L  *  K  T  L  V  S  I  P  K  S  L  S  T  V  A  R  V  P  L  S  Q  S  H  S  E  E  S  *  C  G  T  N  A  C  V  W  F  K  *  V  S  T  T  T  S  M  L  I  I  *  R  G  A  T  Y  M  H  T  T  Q  A  S  P  F  T  I  A  I  R  Y  H  I  *  I  I  E  I  R  P  K  S  D  K  Y  I  S  S  L  S  L  S  L  Y  I  G  L  Y </second_frame>
            <third_frame>   L  A  K  L  Q  A  I  I  K  C  L  R  S  S  F  R  V  C  F  Y  T  K  K  H  L  Y  L  E  F  L  P  F  F  P  H  R  C  T  H  L  Y  S  S  I  S  L  Y  K  L  V  Y  Y  Q  N  Y  S  N  L  Q  V  L  A  *  *  L  L  L  P  P  L  H  D  N  V  V  W  L  *  I  N  D  A  K  H  E  Y  L  *  R  Y  E  K  R  *  L  V  Y  Q  S  L  Y  L  Q  *  L  E  F  L  L  A  N  P  I  L  K  N  H  N  V  G  L  M  H  V  C  G  S  N  K  L  V  P  L  L  V  C  S  L  F  E  G  A  L  H  T  C  I  Q  P  K  L  A  L  L  P  S  R  F  D  T  T  Y  K  S  L  K  L  D  P  S  L  T  S  I  L  V  A  S  H  Y  H  Y  T  L  D  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="93763" stop="93518"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEFLLANPILKNHNVGLMHVCGSNKLVPLLVCSLFEGALHTCIQPKLALLPSRFDTTYKSLKLDPSLTSILVASHYHYTLDY</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94050" stop="93838"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NAYVHLLEFVFIPKNTSILSFFLFFHIDALIYILPYRFINWCTIKIIVISKYWLDSFCCLHCMIMWYGCE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="98930" PGL_stop="98363"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="98930" e_stop="98363"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.910"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.910">
            <gDNA_exon_boundary e_start="98930" e_stop="98363" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="98930" stop="98363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E563195" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGATACAATATTGGCCAAAACACCAGATCAGAAACTGGCTATGGAAGTTAATATGGAAGATAAAAATACCCTTGAAGATCTCATGTTTTGCTTGGTTAGTGAGCAAAAGGGCCTGCTTAACACATGAAGTGTTTCAAATGGAAGGCAGACGAATATGCTCAAGATGATTTATGTGTGATCAAGATGCAGAAGTTAATAGTCACTTTTTCCTTCATTGCAAAGTAGATACAAGCTTGTGGAACATGTTTCTTGGTCTTCTTGGTGTTTCCTGGGTAGTTCCAAAGTCCACTAAGGATTTGCTCTACTGGTGGAAGGAGATAGGAAGAAGGGGGTCTAATGAAGATTGGTGGGAGTTAATCCCAGCCTGCATTTGGTGGTCCCTTTGGAAAGAAAGGAAGGGAAGATGCTTGTGGATAAGAGAAACAACACCCAGAAAATTAGAATGAATTGTCTTAGTCTTTTGTACTTTTGGTGTAAACAAGATATGGTGTGGGATATAGAACTTCTGCTGACTTTATAGGTAATTTGTAATCTCCCATAGGATAGTTTGATATGCTCCAATGAGATT</gDNA_template>
            <first_frame> R  Y  N  I  G  Q  N  T  R  S  E  T  G  Y  G  S  *  Y  G  R  *  K  Y  P  *  R  S  H  V  L  L  G  *  *  A  K  G  P  A  *  H  M  K  C  F  K  W  K  A  D  E  Y  A  Q  D  D  L  C  V  I  K  M  Q  K  L  I  V  T  F  S  F  I  A  K  *  I  Q  A  C  G  T  C  F  L  V  F  L  V  F  P  G  *  F  Q  S  P  L  R  I  C  S  T  G  G  R  R  *  E  E  G  G  L  M  K  I  G  G  S  *  S  Q  P  A  F  G  G  P  F  G  K  K  G  R  E  D  A  C  G  *  E  K  Q  H  P  E  N  *  N  E  L  S  *  S  F  V  L  L  V  *  T  R  Y  G  V  G  Y  R  T  S  A  D  F  I  G  N  L  *  S  P  I  G  *  F  D  M  L  Q  *  D  </first_frame>
            <second_frame>  D  T  I  L  A  K  T  P  D  Q  K  L  A  M  E  V  N  M  E  D  K  N  T  L  E  D  L  M  F  C  L  V  S  E  Q  K  G  L  L  N  T  *  S  V  S  N  G  R  Q  T  N  M  L  K  M  I  Y  V  *  S  R  C  R  S  *  *  S  L  F  P  S  L  Q  S  R  Y  K  L  V  E  H  V  S  W  S  S  W  C  F  L  G  S  S  K  V  H  *  G  F  A  L  L  V  E  G  D  R  K  K  G  V  *  *  R  L  V  G  V  N  P  S  L  H  L  V  V  P  L  E  R  K  E  G  K  M  L  V  D  K  R  N  N  T  Q  K  I  R  M  N  C  L  S  L  L  Y  F  W  C  K  Q  D  M  V  W  D  I  E  L  L  L  T  L  *  V  I  C  N  L  P  *  D  S  L  I  C  S  N  E  I </second_frame>
            <third_frame>   I  Q  Y  W  P  K  H  Q  I  R  N  W  L  W  K  L  I  W  K  I  K  I  P  L  K  I  S  C  F  A  W  L  V  S  K  R  A  C  L  T  H  E  V  F  Q  M  E  G  R  R  I  C  S  R  *  F  M  C  D  Q  D  A  E  V  N  S  H  F  F  L  H  C  K  V  D  T  S  L  W  N  M  F  L  G  L  L  G  V  S  W  V  V  P  K  S  T  K  D  L  L  Y  W  W  K  E  I  G  R  R  G  S  N  E  D  W  W  E  L  I  P  A  C  I  W  W  S  L  W  K  E  R  K  G  R  C  L  W  I  R  E  T  T  P  R  K  L  E  *  I  V  L  V  F  C  T  F  G  V  N  K  I  W  C  G  I  *  N  F  C  *  L  Y  R  *  F  V  I  S  H  R  I  V  *  Y  A  P  M  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="98763" stop="98485"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>276</number_coding_nucleotides>
                  <number_encoded_amino_acids>92</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FMCDQDAEVNSHFFLHCKVDTSLWNMFLGLLGVSWVVPKSTKDLLYWWKEIGRRGSNEDWWELIPACIWWSLWKERKGRCLWIRETTPRKLE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="106313" PGL_stop="104463"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106313" e_stop="106184"/>
            <exon e_start="106099" e_stop="105911"/>
            <exon e_start="104624" e_stop="104463"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.130" acc_prob="0.976" e_score="0.992"/>
          <exon-intron don_prob="0.977" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="106313" e_stop="106184" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.130" acc_prob="0.976">
            <gDNA_intron_boundary i_start="106183" i_stop="106100" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="106099" e_stop="105911" e_length="189"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.999">
            <gDNA_intron_boundary i_start="105910" i_stop="104625" i_length="1286"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="104624" e_stop="104463" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106313" stop="106184"/>
              <exon start="106099" stop="105911"/>
              <exon start="104624" stop="104463"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGCTTATCTTCTAGTTCTTTAGGCAGAGAGAAGGAAAACATTAGAAAAGATTTGGAGAAAACAAAAGCAAAGTTGAGAGACACAGAATCCAAACTTAGGAATGCCATCCAGGAGAAGACAAAACTTGAG : GGTGAAAGAGCTTGTGCTGAGAGGGAAATTAAACGCTTAAATGGCCAGAGGGCTATTCTTGAGCGTGACATCAATAAACGAGACTCAAATATTGGAAGAAGGCGTGATTCAGTCGTTGATAGGAGCTCTAATGTGCTCGACTCCAAAAGATCCAAGAATTCCTCTGTTTGTGTCGAACATGTTGTGCAG : GAGGAGTATCGGAAATTGGAAGTGCTGGCTTTTGAGATGGAGACAACAATTGCTTCTTTGGAAGAGGAATTAACAATTTCTCATGCAGAAAATGAAGAAGCCAATTCTAGAGCAGAAAATTTAGCATGTGAATTGCAAGCTTTATCTGACGAGTTGAATATG</gDNA_template>
            <first_frame> M  L  I  F  *  F  F  R  Q  R  E  G  K  H  *  K  R  F  G  E  N  K  S  K  V  E  R  H  R  I  Q  T  *  E  C  H  P  G  E  D  K  T  *   : G  *  K  S  L  C  *  E  G  N  *  T  L  K  W  P  E  G  Y  S  *  A  *  H  Q  *  T  R  L  K  Y  W  K  K  A  *  F  S  R  *  *  E  L  *  C  A  R  L  Q  K  I  Q  E  F  L  C  L  C  R  T  C  C  A   : G  G  V  S  E  I  G  S  A  G  F  *  D  G  D  N  N  C  F  F  G  R  G  I  N  N  F  S  C  R  K  *  R  S  Q  F  *  S  R  K  F  S  M  *  I  A  S  F  I  *  R  V  E  Y  </first_frame>
            <second_frame>  C  L  S  S  S  S  L  G  R  E  K  E  N  I  R  K  D  L  E  K  T  K  A  K  L  R  D  T  E  S  K  L  R  N  A  I  Q  E  K  T  K  L  E  :  G  E  R  A  C  A  E  R  E  I  K  R  L  N  G  Q  R  A  I  L  E  R  D  I  N  K  R  D  S  N  I  G  R  R  R  D  S  V  V  D  R  S  S  N  V  L  D  S  K  R  S  K  N  S  S  V  C  V  E  H  V  V  Q  :  E  E  Y  R  K  L  E  V  L  A  F  E  M  E  T  T  I  A  S  L  E  E  E  L  T  I  S  H  A  E  N  E  E  A  N  S  R  A  E  N  L  A  C  E  L  Q  A  L  S  D  E  L  N  M </second_frame>
            <third_frame>   A  Y  L  L  V  L  *  A  E  R  R  K  T  L  E  K  I  W  R  K  Q  K  Q  S  *  E  T  Q  N  P  N  L  G  M  P  S  R  R  R  Q  N  L  R :   V  K  E  L  V  L  R  G  K  L  N  A  *  M  A  R  G  L  F  L  S  V  T  S  I  N  E  T  Q  I  L  E  E  G  V  I  Q  S  L  I  G  A  L  M  C  S  T  P  K  D  P  R  I  P  L  F  V  S  N  M  L  C  R :   R  S  I  G  N  W  K  C  W  L  L  R  W  R  Q  Q  L  L  L  W  K  R  N  *  Q  F  L  M  Q  K  M  K  K  P  I  L  E  Q  K  I  *  H  V  N  C  K  L  Y  L  T  S  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106312" stop="106184"/>
                    <exon start="106099" stop="105911"/>
                    <exon start="104624" stop="104463"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>480</number_coding_nucleotides>
                  <number_encoded_amino_acids>160</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLSSSSLGREKENIRKDLEKTKAKLRDTESKLRNAIQEKTKLEGERACAEREIKRLNGQRAILERDINKRDSNIGRRRDSVVDRSSNVLDSKRSKNSSVCVEHVVQEEYRKLEVLAFEMETTIASLEEELTISHAENEEANSRAENLACELQALSDELNM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="127595" PGL_stop="127066"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127595" e_stop="127066"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="127595" e_stop="127066" e_length="530"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127595" stop="127066"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127453" stop="127069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCGACGGATCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTCTGCTGCTCTTCTTTATTACCCTCGACGACAAGTATGACGGACCGTTATAGGCACAACGGTCCGTCGAGGGTCTTCGTTCCAAAACACTTCAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGCAGGACGGACCGTCATCGACACGACGGACCGTCACAAGCTTCGTAACCCACACTTGGTCAGACTTCCCCATCTTCCTTCAGCACCTGCACTACGCTGCCACCTACGGACCGTCACAAGCATGATGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCATCTTTGGACAGATTTCCTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAACTTAAGGAAAAAGTATCAATAATACCGTGAAACCACGGTATATCAAAGAGCC</gDNA_template>
            <first_frame> S  R  R  I  V  M  V  T  T  D  R  H  G  L  R  R  P  I  L  M  Q  F  L  L  L  L  F  F  I  T  L  D  D  K  Y  D  G  P  L  *  A  Q  R  S  V  E  G  L  R  S  K  T  L  Q  L  L  E  Y  G  Y  W  D  Y  F  S  E  L  H  D  E  P  A  G  R  T  V  I  D  T  T  D  R  H  K  L  R  N  P  H  L  V  R  L  P  H  L  P  S  A  P  A  L  R  C  H  L  R  T  V  T  S  M  M  D  R  H  K  L  R  R  W  S  L  L  H  F  F  A  Q  N  L  R  I  H  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  W  T  H  *  T  *  G  K  S  I  N  N  T  V  K  P  R  Y  I  K  E   </first_frame>
            <second_frame>  R  D  G  S  S  W  S  R  R  T  V  M  D  S  V  V  P  Y  L  C  N  F  F  C  C  S  S  L  L  P  S  T  T  S  M  T  D  R  Y  R  H  N  G  P  S  R  V  F  V  P  K  H  F  N  S  W  N  M  G  T  G  I  T  S  L  N  F  M  T  N  L  Q  D  G  P  S  S  T  R  R  T  V  T  S  F  V  T  H  T  W  S  D  F  P  I  F  L  Q  H  L  H  Y  A  A  T  Y  G  P  S  Q  A  *  W  T  V  I  S  S  V  G  G  L  F  C  I  S  S  L  K  I  S  A  F  I  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  K  A  F  G  H  T  K  L  K  E  K  V  S  I  I  P  *  N  H  G  I  S  K  S  </second_frame>
            <third_frame>   A  T  D  R  H  G  H  D  G  P  S  W  T  P  S  S  H  T  Y  A  I  S  S  A  A  L  L  Y  Y  P  R  R  Q  V  *  R  T  V  I  G  T  T  V  R  R  G  S  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  L  L  L  *  T  S  *  R  T  C  R  T  D  R  H  R  H  D  G  P  S  Q  A  S  *  P  T  L  G  Q  T  S  P  S  S  F  S  T  C  T  T  L  P  P  T  D  R  H  K  H  D  G  P  S  *  A  P  *  V  V  S  S  A  F  L  R  S  K  S  P  H  S  S  L  D  R  F  P  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  L  D  T  L  N  L  R  K  K  Y  Q  *  Y  R  E  T  T  V  Y  Q  R  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127594" stop="127259"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>333</number_coding_nucleotides>
                  <number_encoded_amino_acids>111</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RDGSSWSRRTVMDSVVPYLCNFFCCSSLLPSTTSMTDRYRHNGPSRVFVPKHFNSWNMGTGITSLNFMTNLQDGPSSTRRTVTSFVTHTWSDFPIFLQHLHYAATYGPSQA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0308B07.2" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="127475" stop="127152"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>321</number_coding_nucleotides>
                  <number_encoded_amino_acids>107</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRSKTLQLLEYGYWDYFSELHDEPAGRTVIDTTDRHKLRNPHLVRLPHLPSAPALRCHLRTVTSMMDRHKLRRWSLLHFFAQNLRIHLWTDFLQNKEKLI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="131506" PGL_stop="132464"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="131506" e_stop="132464"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="131506" e_stop="132464" e_length="959"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131506" stop="132219"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131506" stop="132136"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208838" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131699" stop="132464"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379569" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTACTGCGATGTCTTGTAACCTTTTCGGGTTAATCTTTTCAATCCTTGGCATTATTTAGTCTCTCTATATTGTTTATTATTTCCTCGCTCTTGCTTTATACTATTCTTCTCAATCTTATTCTAGCTTGCTTTAGGTTTTTATGGTTACTTGATTGTCTACTTTCTTTCCTCAGTGCAATCTTCATCTTCTTGGCTACACTTATTTGCATTTTGTATATTTTTTAAGACCATATTAATTCAATACATAATTGTTACCAGTTAAAGTGATTATCAAGTTCATTCTCAGCGGAAAAACTGAATGCCTATGTCATGTTTATTTGGCACCCATAAATTATTCGACAAAATGTCCTGTAGAGGCACATTGCCTACCACTTCTGAAAATAGCTTTGAAATTCACTCAATAGGCATTATACTTCTAAAATGTTTGAAAAATTGCCCTTAAGAGGCACATTGTCAACGGCTTGTGAAAATTGACTTATGGACTTCAAAATTCACTCAACAAGTATTATCTCAGGGCTTCTTTCTCCTGTTTTTTTACTTTCAAATCTGGGCAAACCATGCTTATTTTCGTGCCCATGAAGTGTTAAAAAAAAATCCTCAAGCAGCACATTGACAATGGTTCTTGAAATTGCCTACGATGGACATGTCTATTTTGGCATCCATGAAGTGTTCGAAACAATGTCGTACACTGCCAACAGCTTCTTGAAATGACTTCAAAAATTAGTCACCAAATATTATCTCAATTCTGAAGGCTTCTTTTCACTGGCTTCTCTTTCAAATCTGCACAGGTCATGCTTATTTTGATACTAGATTCTGAGAACGTGCCTTGCACGTTTGTCCCTTATTATTATTATATTAATTTTTTATATACTAAAAAGTTAAGGAATTAAAAATATGCTTAAATTAACAATAGTAGTTTAACCATTTATCTTTTATTCGCTAAATAATAACAAATA</gDNA_template>
            <first_frame> S  L  L  R  C  L  V  T  F  S  G  *  S  F  Q  S  L  A  L  F  S  L  S  I  L  F  I  I  S  S  L  L  L  Y  T  I  L  L  N  L  I  L  A  C  F  R  F  L  W  L  L  D  C  L  L  S  F  L  S  A  I  F  I  F  L  A  T  L  I  C  I  L  Y  I  F  *  D  H  I  N  S  I  H  N  C  Y  Q  L  K  *  L  S  S  S  F  S  A  E  K  L  N  A  Y  V  M  F  I  W  H  P  *  I  I  R  Q  N  V  L  *  R  H  I  A  Y  H  F  *  K  *  L  *  N  S  L  N  R  H  Y  T  S  K  M  F  E  K  L  P  L  R  G  T  L  S  T  A  C  E  N  *  L  M  D  F  K  I  H  S  T  S  I  I  S  G  L  L  S  P  V  F  L  L  S  N  L  G  K  P  C  L  F  S  C  P  *  S  V  K  K  K  S  S  S  S  T  L  T  M  V  L  E  I  A  Y  D  G  H  V  Y  F  G  I  H  E  V  F  E  T  M  S  Y  T  A  N  S  F  L  K  *  L  Q  K  L  V  T  K  Y  Y  L  N  S  E  G  F  F  S  L  A  S  L  S  N  L  H  R  S  C  L  F  *  Y  *  I  L  R  T  C  L  A  R  L  S  L  I  I  I  I  L  I  F  Y  I  L  K  S  *  G  I  K  N  M  L  K  L  T  I  V  V  *  P  F  I  F  Y  S  L  N  N  N  K   </first_frame>
            <second_frame>  L  Y  C  D  V  L  *  P  F  R  V  N  L  F  N  P  W  H  Y  L  V  S  L  Y  C  L  L  F  P  R  S  C  F  I  L  F  F  S  I  L  F  *  L  A  L  G  F  Y  G  Y  L  I  V  Y  F  L  S  S  V  Q  S  S  S  S  W  L  H  L  F  A  F  C  I  F  F  K  T  I  L  I  Q  Y  I  I  V  T  S  *  S  D  Y  Q  V  H  S  Q  R  K  N  *  M  P  M  S  C  L  F  G  T  H  K  L  F  D  K  M  S  C  R  G  T  L  P  T  T  S  E  N  S  F  E  I  H  S  I  G  I  I  L  L  K  C  L  K  N  C  P  *  E  A  H  C  Q  R  L  V  K  I  D  L  W  T  S  K  F  T  Q  Q  V  L  S  Q  G  F  F  L  L  F  F  Y  F  Q  I  W  A  N  H  A  Y  F  R  A  H  E  V  L  K  K  N  P  Q  A  A  H  *  Q  W  F  L  K  L  P  T  M  D  M  S  I  L  A  S  M  K  C  S  K  Q  C  R  T  L  P  T  A  S  *  N  D  F  K  N  *  S  P  N  I  I  S  I  L  K  A  S  F  H  W  L  L  F  Q  I  C  T  G  H  A  Y  F  D  T  R  F  *  E  R  A  L  H  V  C  P  L  L  L  L  Y  *  F  F  I  Y  *  K  V  K  E  L  K  I  C  L  N  *  Q  *  *  F  N  H  L  S  F  I  R  *  I  I  T  N  </second_frame>
            <third_frame>   S  T  A  M  S  C  N  L  F  G  L  I  F  S  I  L  G  I  I  *  S  L  Y  I  V  Y  Y  F  L  A  L  A  L  Y  Y  S  S  Q  S  Y  S  S  L  L  *  V  F  M  V  T  *  L  S  T  F  F  P  Q  C  N  L  H  L  L  G  Y  T  Y  L  H  F  V  Y  F  L  R  P  Y  *  F  N  T  *  L  L  P  V  K  V  I  I  K  F  I  L  S  G  K  T  E  C  L  C  H  V  Y  L  A  P  I  N  Y  S  T  K  C  P  V  E  A  H  C  L  P  L  L  K  I  A  L  K  F  T  Q  *  A  L  Y  F  *  N  V  *  K  I  A  L  K  R  H  I  V  N  G  L  *  K  L  T  Y  G  L  Q  N  S  L  N  K  Y  Y  L  R  A  S  F  S  C  F  F  T  F  K  S  G  Q  T  M  L  I  F  V  P  M  K  C  *  K  K  I  L  K  Q  H  I  D  N  G  S  *  N  C  L  R  W  T  C  L  F  W  H  P  *  S  V  R  N  N  V  V  H  C  Q  Q  L  L  E  M  T  S  K  I  S  H  Q  I  L  S  Q  F  *  R  L  L  F  T  G  F  S  F  K  S  A  Q  V  M  L  I  L  I  L  D  S  E  N  V  P  C  T  F  V  P  Y  Y  Y  Y  I  N  F  L  Y  T  K  K  L  R  N  *  K  Y  A  *  I  N  N  S  S  L  T  I  Y  L  L  F  A  K  *  *  Q  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0308B07.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 263 chains have been computed
$ 
$ memory statistics:
$ 365312 bytes spliced alignments in total
$ 164 spliced alignments have been stored
$ 2227 bytes was the average size of a spliced alignment
$ 22152 bytes predicted gene locations in total
$ 13 predicted gene locations have been stored
$ 1704 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 303 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:53:53
-->
