<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 23:27:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="6484" stop="5554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6184" g_stop="5854" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6184" e_stop="5854"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCCAATGTCACCGTTTTGGCATTGCAATCTAAGATTGCGAAGTTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTATAAGATAACCAAGTCTACATGAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGGAATCATAAATCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="+" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="5584" stop="6845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5884" g_stop="6545" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5884" e_stop="6545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCCTGGATCCACATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTCATGTAGACTTGGTTATCTTATAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACTTCGCAATCTTAGATTGCAATGCCAAAACGGTGACATTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGATTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGATAAGTGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAGTTGAGGCGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGACCTTCCTGGTATGCCACCAGATAGGGATATCGACTTTTGTATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGATTTAAGAGAGTTAAAGGCCCAACTTCAACTAGTTGTTAAGCAAAGGCTTTATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGTGG-GAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATACCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAA-GAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352950" ref_strand="+" ref_description="SGN-E352950 [cTOS-14-C13]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="8291" stop="7105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7991" g_stop="7405" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E352950" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352950" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7991" e_stop="7405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAGTCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCTCATCACCTTATCTAGGATCCGAATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTTCCACCACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAATAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACAATGATCTCTATAGACTTCACACTTAACCCCATATAGATAATGCCTTCATTCCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTAGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E357100" ref_strand="+" ref_description="SGN-E357100 [cTOS-22-N3]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="8291" stop="7105"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7991" g_stop="7405" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E357100" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357100" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7991" e_stop="7405"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAGTCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCTCATCACCTTATCTAGGATCCGAATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTTCCACCACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAATAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACAATGATCTCTATAGACTTCACACTTAACCCCATATAGATAATGCCTTCATTCCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTAGGATAATTACGTTCATGCACCTTTAATTGC</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E352647" ref_strand="+" ref_description="SGN-E352647 [cTOS-11-I7]">
      <seq>cctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaacccatagagataatggctctattactttaatgcaatcactactgccgctaactccaaatcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="8291" stop="7138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7991" g_stop="7438" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E352647" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7991" e_stop="7438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCTGTAAGAATAGTGTGAATCAAGTCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCTCATCACCTTATCTAGGATCCGAATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTTCCACCACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAATAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACAATGATCTCTATAGACTTCACACTTAACCCCATATAGATAATGCCTTCATTCCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGG</genome_strand>
        <mrna_strand>CCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAAACCCATAGAGATAATGGCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E353207" ref_strand="+" ref_description="SGN-E353207 [cTOS-14-B13]">
      <seq>tcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatactccttcccttattctcaaaacaccttcctcatcgatttttgcttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="8736" stop="7595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8436" g_stop="7895" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E353207" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8436" e_stop="7895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTTTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGTCCGGAATGAAATGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACTTACCCATCGTCTTTGGATGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAAGCCTCTGGTGTTCATACTTTACCTAATGACAATTCAGGCATTGAGCAACGAAATCAACAATGTCCCGCTTCATCCTACTCCACCAAAAATATTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGATTACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAGTCATCGACGCGGGGTACACATAC-CCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</genome_strand>
        <mrna_strand>TCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACTCCTTCCCTT-ATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E380063" ref_strand="+" ref_description="SGN-E380063 [TUS-3-N2](-)">
      <seq>agtcaagatccagagaaatccagtaaaccagctcgtagatcatacactagaaaacgaaaatcgagtgtcgatcatgacatgacaccaggcgttcctcctgaggacattgagaagaggaaacatgagccagcagaactcattttaatttttgcagagggtagtcctcttccatctgaaatgaaccttaataaaatgtttaggcggtttgggccattgaaggaattagaaactgaagttcatcaggagtcttctcgtgctagagtagtctttaaaaggggttctgacgcagaggttgctcatagtagtgtaggaaagttcaacatctttgggtcacggcaagtgacatatgaactcagctacacaccagttatctcatttaagccgatgctccttacagttacgccaggcctggagggagttatttgatgcttcagctccaaagtggataacagcttgaggttaaacaagaaatgattattattgcagggaaggccaacagtagcatctttctttcattagaagatagcgggtgaatgccatctttttgtaaagattaaaactttatttctgtctgtattttcttctctttctatttccccagagtttctctcctgctccattagaaatgacatcgatcaacttcccagttccctctttatctttatggataaagtatattagaaaatcatttactatcaaattattgaagtgggatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="30215" stop="28225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29917" g_stop="29460" g_length="458"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29459" i_stop="28786" i_length="674">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28785" g_stop="28525" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="719" r_length="261" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E380063" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>719</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E380063" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29917" e_stop="29460"/>
          <exon e_start="28785" e_stop="28525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGCCAGCAGAACTCATTTTAATTTTTGCAGAGGGTAGTCCTCTTCCATCTGAAATGAACCTTAATAAAATGTTTAGGCGGTTTGGGCCATTGAAGGAATTAGAAACTGAAGTTCATCAGGAGTCTTCTCGTGCTAGAGTAGTCTTTAAAAGGGGTTCTGACGCAGAGGTTGCTCATAGTAGTGTAGGAAAGTTCAACATCTTTGGGTCACGGCAAGTGACATATGAACTCAGCTACACACCAGTTATCTCATTTAAGCCGATGCTCCTTACAGTTACGCCAGGCCTGGAGGGAGTTATTTGATGCTTCAGCTCCAAAGTGGATAACAGCTTGAGGTAATTTATTTGCGCATTGTAAATGCACCCTTGAAATCTATACATATGAATACTTGTTTGTTGATCTAAATTTGTATAATCTGGCATGAAACAACTTCATCGCGGTCTTCGCTCCCTCCCCATCCCTAAATTTTTATGTGTTCTTTGTATATACCAATGCCAGAAATTCTGAAGAAGCTATAGGATTTTTACTTGAAAAGAAATTTGTCATACCCCCGTATGAAGGGAAGTCCTTTCAGTATCAAAATTTCATCCTCGTCCTTTATTTTTGGATAGGGTATTTTCTCAAGTTGTAACAGCTACCTTACCAAAAAAGTTCTTCAATTCTTCAATACTCCCTCTCTTCAATTTTGTATCTGTGTTTAATTGGACACTGAATTTAAGAATCATGTGATCTTAACATAAAGATGCATGCAAGTACACAAATTCAACCTCTGAAAATTGTGGCTTTAAACATGTCATATGATATTTGAAACTTAAGTATAAAAAGCGACATTCTTTTTCAAGCAGTCGAAAGGAAGTAAGCCACATTTTGACAAAGTGATTTCTTTTCATTACAACCACATTTTGGGAAATTCTATCTTGTTTGCTTCTTGATTCTTTATATCTTGGATGTTAGCTTTTACTCTCTCAGTTTCGTTTCGTCTTGACTAGTATTCTACTTTATATTGTAGGTTAAACAAGAAATGATTATTATTGCAGGGAAGGCCAACAGTAGCATCTTTCTTTCATTAGAAGATAGCGGGTGAATGCCATCTTTTTGTAAAGATTAAAACTTTATTTCTGTCTGTATTTTCTTCTCTTTCTATTTCCCCAGAGTTTCTCTCCTGCTCCATTAGAAATGACATCGATCAACTTCCCAGTTCCCTCTTTATCTTTATGGATAAAGTATATTAGAAAATCATTTACTATCAAATTATTCAAGTGGGATGGGC</genome_strand>
        <mrna_strand>AGTCAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGCCAGCAGAACTCATTTTAATTTTTGCAGAGGGTAGTCCTCTTCCATCTGAAATGAACCTTAATAAAATGTTTAGGCGGTTTGGGCCATTGAAGGAATTAGAAACTGAAGTTCATCAGGAGTCTTCTCGTGCTAGAGTAGTCTTTAAAAGGGGTTCTGACGCAGAGGTTGCTCATAGTAGTGTAGGAAAGTTCAACATCTTTGGGTCACGGCAAGTGACATATGAACTCAGCTACACACCAGTTATCTCATTTAAGCCGATGCTCCTTACAGTTACGCCAGGCCTGGAGGGAGTTATTTGATGCTTCAGCTCCAAAGTGGATAACAGCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAACAAGAAATGATTATTATTGCAGGGAAGGCCAACAGTAGCATCTTTCTTTCATTAGAAGATAGCGGGTGAATGCCATCTTTTTGTAAAGATTAAAACTTTATTTCTGTCTGTATTTTCTTCTCTTTCTATTTCCCCAGAGTTTCTCTCCTGCTCCATTAGAAATGACATCGATCAACTTCCCAGTTCCCTCTTTATCTTTATGGATAAAGTATATTAGAAAATCATTTACTATCAAATTATTGAAGTGGGATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E378951" ref_strand="+" ref_description="SGN-E378951 [TUS-3-N2]">
      <seq>caagatccagagaaatccagtaaaccagctcgtagatcatacactagaaaacgaaaatcgagtgtcgatcatgacatgacaccaggcgttcctcctgaggacattgagaagaggaaacatgagccagcagaactcattttaatttttgcagagggtagtcctcttccatctgaaatgaaccttaataaaatgtttaggcggtttgggccattgaaggaattagaaactgaagttcatcaggagtcttctcgtgctagagtagtctttaaaaggggttctgacgcagaggttgctcatagtagtgtaggaaagttcaacatctttgggtcacggcaagtgacatatgaactcagctacacaccagttatctcatttaagccgatgctccttacagttacgccaggcctggagggagttatttgatgcttcagctccaaagtggataacagcttgaggttaaacaagaaatgattattattgcagggaaggccaacagtagcatctttctttcattagaagatagcgggtgaatgccatctttttgtaaagattaaaactttatttctgtctgtattttcttctctttctatttcccagagtttctctcctgctccattagaaatgacatcgatcaacttcccagttccctctttatctttatgggataagtatattagaaaatcatttactatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="30214" stop="28245"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29914" g_stop="29460" g_length="455"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="455" r_length="455" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="29459" i_stop="28786" i_length="674">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28785" g_stop="28545" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="695" r_length="240" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E378951" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>696</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29914" e_stop="29460"/>
          <exon e_start="28785" e_stop="28545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGCCAGCAGAACTCATTTTAATTTTTGCAGAGGGTAGTCCTCTTCCATCTGAAATGAACCTTAATAAAATGTTTAGGCGGTTTGGGCCATTGAAGGAATTAGAAACTGAAGTTCATCAGGAGTCTTCTCGTGCTAGAGTAGTCTTTAAAAGGGGTTCTGACGCAGAGGTTGCTCATAGTAGTGTAGGAAAGTTCAACATCTTTGGGTCACGGCAAGTGACATATGAACTCAGCTACACACCAGTTATCTCATTTAAGCCGATGCTCCTTACAGTTACGCCAGGCCTGGAGGGAGTTATTTGATGCTTCAGCTCCAAAGTGGATAACAGCTTGAGGTAATTTATTTGCGCATTGTAAATGCACCCTTGAAATCTATACATATGAATACTTGTTTGTTGATCTAAATTTGTATAATCTGGCATGAAACAACTTCATCGCGGTCTTCGCTCCCTCCCCATCCCTAAATTTTTATGTGTTCTTTGTATATACCAATGCCAGAAATTCTGAAGAAGCTATAGGATTTTTACTTGAAAAGAAATTTGTCATACCCCCGTATGAAGGGAAGTCCTTTCAGTATCAAAATTTCATCCTCGTCCTTTATTTTTGGATAGGGTATTTTCTCAAGTTGTAACAGCTACCTTACCAAAAAAGTTCTTCAATTCTTCAATACTCCCTCTCTTCAATTTTGTATCTGTGTTTAATTGGACACTGAATTTAAGAATCATGTGATCTTAACATAAAGATGCATGCAAGTACACAAATTCAACCTCTGAAAATTGTGGCTTTAAACATGTCATATGATATTTGAAACTTAAGTATAAAAAGCGACATTCTTTTTCAAGCAGTCGAAAGGAAGTAAGCCACATTTTGACAAAGTGATTTCTTTTCATTACAACCACATTTTGGGAAATTCTATCTTGTTTGCTTCTTGATTCTTTATATCTTGGATGTTAGCTTTTACTCTCTCAGTTTCGTTTCGTCTTGACTAGTATTCTACTTTATATTGTAGGTTAAACAAGAAATGATTATTATTGCAGGGAAGGCCAACAGTAGCATCTTTCTTTCATTAGAAGATAGCGGGTGAATGCCATCTTTTTGTAAAGATTAAAACTTTATTTCTGTCTGTATTTTCTTCTCTTTCTATTTCCCCAGAGTTTCTCTCCTGCTCCATTAGAAATGACATCGATCAACTTCCCAGTTCCCTCTTTATCTTTATGGATAAAGTATATTAGAAAATCATTTACTATCAA</genome_strand>
        <mrna_strand>CAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGCCAGCAGAACTCATTTTAATTTTTGCAGAGGGTAGTCCTCTTCCATCTGAAATGAACCTTAATAAAATGTTTAGGCGGTTTGGGCCATTGAAGGAATTAGAAACTGAAGTTCATCAGGAGTCTTCTCGTGCTAGAGTAGTCTTTAAAAGGGGTTCTGACGCAGAGGTTGCTCATAGTAGTGTAGGAAAGTTCAACATCTTTGGGTCACGGCAAGTGACATATGAACTCAGCTACACACCAGTTATCTCATTTAAGCCGATGCTCCTTACAGTTACGCCAGGCCTGGAGGGAGTTATTTGATGCTTCAGCTCCAAAGTGGATAACAGCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAACAAGAAATGATTATTATTGCAGGGAAGGCCAACAGTAGCATCTTTCTTTCATTAGAAGATAGCGGGTGAATGCCATCTTTTTGTAAAGATTAAAACTTTATTTCTGTCTGTATTTTCTTCTCTTTCTATTT-CCCAGAGTTTCTCTCCTGCTCCATTAGAAATGACATCGATCAACTTCCCAGTTCCCTCTTTATCTTTATGGGATAAGTATATTAGAAAATCATTTACTATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209362" ref_strand="+" ref_description="SGN-E209362 [cLEC-53-K15]">
      <seq>caagatccagagaaatccagtaaaccagctcgtagatcatacactataaaaccaaaatcgagtgtcgatcatgacatgacaccaggcgttcctcctgaggacattgagaagaggaaacatgagccagcagaactcattttaatttttgcagagggtagtcctcttccatctgaaatgaaccttaataaaatgtttaggcggtttgggccattgaaggaattagaaactgaagttcatcaggagtcttctcgtgctagagtagtctttaaaaggggttctgacgcacaggttgctcatagtagtgtacgaaaattcaacatctttgggtcacggcaagtgacatatgaactcagctacacaccagttatcttcatttaagccgatgctcctta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="30214" stop="29224"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="29914" g_stop="29524" g_length="391"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E209362" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="29914" e_stop="29524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGCCAGCAGAACTCATTTTAATTTTTGCAGAGGGTAGTCCTCTTCCATCTGAAATGAACCTTAATAAAATGTTTAGGCGGTTTGGGCCATTGAAGGAATTAGAAACTGAAGTTCATCAGGAGTCTTCTCGTGCTAGAGTAGTCTTTAAAAGGGGTTCTGACGCAGAGGTTGCTCATAGTAGTGTAGGAAAGTTCAACATCTTTGGGTCACGGCAAGTGACATATGAACTCAGCTACACACCAGTTATC-TCATTTAAGCCGATGCTCCTTA</genome_strand>
        <mrna_strand>CAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTATAAAACCAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGCCAGCAGAACTCATTTTAATTTTTGCAGAGGGTAGTCCTCTTCCATCTGAAATGAACCTTAATAAAATGTTTAGGCGGTTTGGGCCATTGAAGGAATTAGAAACTGAAGTTCATCAGGAGTCTTCTCGTGCTAGAGTAGTCTTTAAAAGGGGTTCTGACGCACAGGTTGCTCATAGTAGTGTACGAAAATTCAACATCTTTGGGTCACGGCAAGTGACATATGAACTCAGCTACACACCAGTTATCTTCATTTAAGCCGATGCTCCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550668" ref_strand="+" ref_description="SGN-E550668 [TUS-11-O21]">
      <seq>gaaaacaagtgcttatgctcccaaagtgttgaccactgcgtctgtatctcctaaaacatcctttcgtattggtgaatgcattcaaagagtggcaagccaattaactcgctcagcctcgcttctgaagggcagcagtgatcaaagtggggctgatgttcaatcacaggactctccaaagggcaaagttgtgattccaactgaactaccttctgcaaatgagttgctctcacagcttcagttggtggcacgggctccaatgaaaggctacaacttaaaaaccatcacgaatttcttttcaggttttagaaattcggttgctgtggggcaaaaatcaatgaagcagaatttgtcggcgggtagagctgctggtggtcgtaagaaaagagcttcacaaactgtggctggttttgctgaagaattcgagtttgatgatgtaaatgattcttattggacagacagggttgtacaaaactgtggagaggagcagccattgcagaataatcagagtgtgacggttcaagatccagagaaatccagtaaaccagctcgtagatcatacactagaaaacgaaaatcgagtgtcgatcatgacatgacaccaggcgttcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="30731" stop="29520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30431" g_stop="29820" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E550668" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30431" e_stop="29820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAGTGCTTATGCTCCCAAAGTGTTGACCACTGCGTCTGTATCTCCTAAAACATCCTTTCGTATTGGTGAATGCATTCAAAGAGTGGCAAGCCAATTAACTCGCTCAGCCTCGCTTCTGAAGGGCAGCAGTGATCAAAGTGGGGCTGATGTTCAATCACAGGACTCTCCAAAGGGCAAAGTTGTGATTCCAACTGAACTACCTTCTGCAAATGAGTTGCTCTCACAGCTTCAGTTGGTGGCACGGGCTCCAATGAAAGGCTACAACTTAAAAACCATCACGAATTTCTTTTCAGGTTTTAGAAATTCGGTTGCTGTGGGGCAAAAATCAATGAAGCAGAATTTGTCGGCGGGTAGAGCTGCTGGTGGTCGTAAGAAAAGAGCTTCACAAACTGTGGCTGGTTTTGCTGAAGAATTCGAGTTTGATGATGTAAATGATTCTTATTGGACAGACAGGGTTGTACAAAACTGTGGAGAGGAGCAGCCATTGCAGAATAATCAGAGTGTGACGGTTCAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCC</genome_strand>
        <mrna_strand>GAAAACAAGTGCTTATGCTCCCAAAGTGTTGACCACTGCGTCTGTATCTCCTAAAACATCCTTTCGTATTGGTGAATGCATTCAAAGAGTGGCAAGCCAATTAACTCGCTCAGCCTCGCTTCTGAAGGGCAGCAGTGATCAAAGTGGGGCTGATGTTCAATCACAGGACTCTCCAAAGGGCAAAGTTGTGATTCCAACTGAACTACCTTCTGCAAATGAGTTGCTCTCACAGCTTCAGTTGGTGGCACGGGCTCCAATGAAAGGCTACAACTTAAAAACCATCACGAATTTCTTTTCAGGTTTTAGAAATTCGGTTGCTGTGGGGCAAAAATCAATGAAGCAGAATTTGTCGGCGGGTAGAGCTGCTGGTGGTCGTAAGAAAAGAGCTTCACAAACTGTGGCTGGTTTTGCTGAAGAATTCGAGTTTGATGATGTAAATGATTCTTATTGGACAGACAGGGTTGTACAAAACTGTGGAGAGGAGCAGCCATTGCAGAATAATCAGAGTGTGACGGTTCAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E688331" ref_strand="+" ref_description="SGN-E688331 [t3_tus_11_o21]">
      <seq>gaaaacaagtgcttatgctcccaaagtgttgaccactgcgtctgtatctcctaaaacatcctttcgtattggtgaatgcattcaaagagtggcaagccaattaactcgctcagcctcgcttctgaagggcagcagtgatcaaagtggggctgatgttcaatcacaggactctccaaagggcaaagttgtgattccaactgaactaccttctgcaaatgagttgctctcacagcttcagttggtggcacgggctccaatgaaaggctacaacttaaaaaccatcacgaatttcttttcaggttttagaaattcggttgctgtggggcaaaaatcaatgaagcagaatttgtcggcgggtagagctgctggtggtcgtaagaaaagagcttcacaaactgtggctggttttgctgaagaattcgagtttgatgatgtaaatgattcttattggacagacagggttgtacaaaactgtggagaggagcagccattgcagaataatcagagtgtgacggttcaagatccagagaaatccagtaaaccagctcgtagatcatacactagaaaacgaaaatcgagtgtcgatcatgacatgacaccaggcgttcctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="30731" stop="29520"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30431" g_stop="29820" g_length="612"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E688331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30431" e_stop="29820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAAGTGCTTATGCTCCCAAAGTGTTGACCACTGCGTCTGTATCTCCTAAAACATCCTTTCGTATTGGTGAATGCATTCAAAGAGTGGCAAGCCAATTAACTCGCTCAGCCTCGCTTCTGAAGGGCAGCAGTGATCAAAGTGGGGCTGATGTTCAATCACAGGACTCTCCAAAGGGCAAAGTTGTGATTCCAACTGAACTACCTTCTGCAAATGAGTTGCTCTCACAGCTTCAGTTGGTGGCACGGGCTCCAATGAAAGGCTACAACTTAAAAACCATCACGAATTTCTTTTCAGGTTTTAGAAATTCGGTTGCTGTGGGGCAAAAATCAATGAAGCAGAATTTGTCGGCGGGTAGAGCTGCTGGTGGTCGTAAGAAAAGAGCTTCACAAACTGTGGCTGGTTTTGCTGAAGAATTCGAGTTTGATGATGTAAATGATTCTTATTGGACAGACAGGGTTGTACAAAACTGTGGAGAGGAGCAGCCATTGCAGAATAATCAGAGTGTGACGGTTCAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCC</genome_strand>
        <mrna_strand>GAAAACAAGTGCTTATGCTCCCAAAGTGTTGACCACTGCGTCTGTATCTCCTAAAACATCCTTTCGTATTGGTGAATGCATTCAAAGAGTGGCAAGCCAATTAACTCGCTCAGCCTCGCTTCTGAAGGGCAGCAGTGATCAAAGTGGGGCTGATGTTCAATCACAGGACTCTCCAAAGGGCAAAGTTGTGATTCCAACTGAACTACCTTCTGCAAATGAGTTGCTCTCACAGCTTCAGTTGGTGGCACGGGCTCCAATGAAAGGCTACAACTTAAAAACCATCACGAATTTCTTTTCAGGTTTTAGAAATTCGGTTGCTGTGGGGCAAAAATCAATGAAGCAGAATTTGTCGGCGGGTAGAGCTGCTGGTGGTCGTAAGAAAAGAGCTTCACAAACTGTGGCTGGTTTTGCTGAAGAATTCGAGTTTGATGATGTAAATGATTCTTATTGGACAGACAGGGTTGTACAAAACTGTGGAGAGGAGCAGCCATTGCAGAATAATCAGAGTGTGACGGTTCAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E269868" ref_strand="+" ref_description="SGN-E269868 [cLEM-17-J7]">
      <seq>aaaacaagtgcttatgctcccaaagtgttgaccactgcgtctgtatctcctaaaacatcctttcgtattggtgaatgcattcaaagagtggcaagccaattaactcgctcagcctcgcttctgaagggcagcagtgatcaaagtggggctgatgttcaatcacaggactctccaaagggcaaagttgtgattccaactgaactaccttctgcaaatgagttgctctcacagcttcagttggtggcacgggctccaatgaaaggctacaacttaaaaaccatcacgaatttcttttcaggttttagaaattcggttgctgtggggcaaaaatcaatgaagcagaatttgtcggcgggtagagctgctggtggtcgtaagaaaagagcttcacaaactgtggctggttttgctgaagaattcgagtttgatgatgtaaatgattcttattggacagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="30730" stop="29675"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30430" g_stop="29975" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="456" r_length="456" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E269868" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269868" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30430" e_stop="29975"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAAGTGCTTATGCTCCCAAAGTGTTGACCACTGCGTCTGTATCTCCTAAAACATCCTTTCGTATTGGTGAATGCATTCAAAGAGTGGCAAGCCAATTAACTCGCTCAGCCTCGCTTCTGAAGGGCAGCAGTGATCAAAGTGGGGCTGATGTTCAATCACAGGACTCTCCAAAGGGCAAAGTTGTGATTCCAACTGAACTACCTTCTGCAAATGAGTTGCTCTCACAGCTTCAGTTGGTGGCACGGGCTCCAATGAAAGGCTACAACTTAAAAACCATCACGAATTTCTTTTCAGGTTTTAGAAATTCGGTTGCTGTGGGGCAAAAATCAATGAAGCAGAATTTGTCGGCGGGTAGAGCTGCTGGTGGTCGTAAGAAAAGAGCTTCACAAACTGTGGCTGGTTTTGCTGAAGAATTCGAGTTTGATGATGTAAATGATTCTTATTGGACAGAC</genome_strand>
        <mrna_strand>AAAACAAGTGCTTATGCTCCCAAAGTGTTGACCACTGCGTCTGTATCTCCTAAAACATCCTTTCGTATTGGTGAATGCATTCAAAGAGTGGCAAGCCAATTAACTCGCTCAGCCTCGCTTCTGAAGGGCAGCAGTGATCAAAGTGGGGCTGATGTTCAATCACAGGACTCTCCAAAGGGCAAAGTTGTGATTCCAACTGAACTACCTTCTGCAAATGAGTTGCTCTCACAGCTTCAGTTGGTGGCACGGGCTCCAATGAAAGGCTACAACTTAAAAACCATCACGAATTTCTTTTCAGGTTTTAGAAATTCGGTTGCTGTGGGGCAAAAATCAATGAAGCAGAATTTGTCGGCGGGTAGAGCTGCTGGTGGTCGTAAGAAAAGAGCTTCACAAACTGTGGCTGGTTTTGCTGAAGAATTCGAGTTTGATGATGTAAATGATTCTTATTGGACAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323972" ref_strand="+" ref_description="SGN-E323972 [cTOC-3-B1]">
      <seq>caaaacgctataagcagtgctttagaagaggtttcgggacgggttgaacttggccttgcttgctcatgcacgcctaaagattcctatgatgagatttcatgtcagattgtggagaacactgggattcgtgaagaagcaagcaaaagatatggagtggacaaatcaactggagtcacttcctttgtacctgataagctcctgcactatatgaaagcattagccctatcaccaacttgtcgggctgatagattggatctcactattgctcgagctcagttagttgccttttgtcgcttcaagggatatcgtctgccaccacaattcttgttgagtggagaactcctagaaaacgatgctgacataccacatgtggacagtgcaattgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="31360" stop="30372"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31060" g_stop="30672" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E323972" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31060" e_stop="30672"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACGCTATAAGCAGTGCTTTAGAAGAGGTTTCAAGACGGGTTGAACTTGGCCTTGCTTGCTCATGCACGCCTAAAGATTCCTATGATGAGATTTCATGTCAGATTGTGGAGAACACTGGGATTCGTGAAGAAGCAAGCAAAAGATATGGAGTGGACAAATCAACTGGAGTCACTTCCTTTGTACCTGATAAGCTCCTGCACTATATGAAAGCATTAGCCCTATCACCAACTTGTCGGGCTGATAGATTGGATCTCACTATTGCTCGAGCTCAGTTAGTTGCCTTTTGTCGCTTCAAGGGATATCGTCTGCCACCACAATTCTTGTTGAGTGGAGAACTCCTAGAAAACGATGCTGACATACCACATGTGGACAGTGCAATTGATGA</genome_strand>
        <mrna_strand>CAAAACGCTATAAGCAGTGCTTTAGAAGAGGTTTCGGGACGGGTTGAACTTGGCCTTGCTTGCTCATGCACGCCTAAAGATTCCTATGATGAGATTTCATGTCAGATTGTGGAGAACACTGGGATTCGTGAAGAAGCAAGCAAAAGATATGGAGTGGACAAATCAACTGGAGTCACTTCCTTTGTACCTGATAAGCTCCTGCACTATATGAAAGCATTAGCCCTATCACCAACTTGTCGGGCTGATAGATTGGATCTCACTATTGCTCGAGCTCAGTTAGTTGCCTTTTGTCGCTTCAAGGGATATCGTCTGCCACCACAATTCTTGTTGAGTGGAGAACTCCTAGAAAACGATGCTGACATACCACATGTGGACAGTGCAATTGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389484" ref_strand="+" ref_description="SGN-E389484 [TUS-4-C21](-)">
      <seq>caacaaggacctaatgtggttggagcaagggctaattcagcatcacctgcaagtcacgtgcagtggtactatccccaagctgcacctccggcttcaccctttcaccatcatcagcctcttcctttctatgggtattctccagcttatattgccacagacatgaactacaatcataaagtaagctacaatggtgggggctacgtgaatggtcatttttctcaagtgtatccaggtcaggcaatgatgccagtgtaccacccatactatcagtttcatcatcagtcacagacaatgggccttccagcccatatctattctccaacacctgctgcccctattccaacccttatgtcaaagcccacatcaattcctcctactgcagtttgtttggctgtggaataggtacaattattatgatgaaaaggatgatgagaaagagcaattattagaatggaggattacaggtggtgattggatcaaataacaaaagagggtgagaggctgctcagagcaatgctattattagagatattctgcagtagctcttctaattaattatataatttccaatttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="121133" stop="118640"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120830" g_stop="120707" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="131" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120706" i_stop="120285" i_length="422">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120284" g_stop="120242" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="174" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120241" i_stop="120165" i_length="77">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120164" g_stop="119957" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="382" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119956" i_stop="119133" i_length="824">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.697" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119132" g_stop="118940" g_length="193"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="575" r_length="193" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E389484" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389484" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120830" e_stop="120707"/>
          <exon e_start="120284" e_stop="120242"/>
          <exon e_start="120164" e_stop="119957"/>
          <exon e_start="119132" e_stop="118940"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGGGTAAATAAAAATTAATTTACTCTCTAATCTTTTCATTTTTAATTTGGATCTCCATAATCCTAGTTTAATTAGCTTCGACCTTTTTCTTACTAACAAGATCCCCTCCTTTCTTTTTTGGCTAACATGGTCAAAATTAGCCCGGACATTAATAAATTAAGTCATAATAATTAATGCTACGCAAGATAAAATGGTAGATCTTTTTTTATTTTCTCTTAGAGATCAATTTTAAATGACAAAGCTATTAAGTATCTTAAATCCTTTCTAGTGAATAAAAAAGAGGGAGTACTACCTTTGACATATTCTAAAAAGAAGTATGATATGTAGTTCCAATATTTATTTTACAAAGCTGACATAACCATGATCAAATTATTTTAAATTGAAAAACGTAGACATAATTATATCAAATTTTGGTATGTTTGCAGGTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCATGTAAGTTTTCATTATGAGGGTGCATTGAAAAATTTGGACTTTTTGGAAATTGAAGTATATTAAATTTTGGTGCACAGAAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGTCACAGACAATGGGCCTTCCAGCCCATATCTATTCTCCAACACCTGCTGCCCCTATTCCAACCCTTATGTCAAAGCCCACATCAATTCCTCCTACTGCAGGTACTCCCTCCCTAGAATATAATATTCTACCTTAATATAAGATTTAAATTATTTTTAATATAATGAAAAATAAATGATGCTCTCACGTAGGGTTATAATATTAATTTCTTAATGGCCTGGATGCTTCTTCCAACGCACATCCACGTGCTGTTTGGAGAATATATTCAACATCAAAATCTGCTACAGAGTGGCATAAATCTTCTCATCATATCCATAGGTCAACAAGGGTAGAAAAAGTAAAAAGGAATTCTTCATTACATTACAATAGAGTATAGACTAGAGGATTATTTAAATTTTTTACCTACACATTATTTTTTCCTATTCATTTTCGAAAGTGGCCAAGATATTTTAATACTTTCAATTTAATTATTCAAATGATACTCGAACATTATGAATAACGATTATTTTTTTATTCTAATTTATTTGTTTGATCTAAATGGAATATGAAACTTAATTTTTTTTATAGTCTTGAATCAAAGATCTGTTGAATAAAAGGTTGGTTTTTTTTTTCTAAACAAATTATGAGAAAGAGTAAAGAAAGGAAATTAAAAGTAATGCTACAATTAGTAATAATATAAGTGTGAAAAATATTTCAAGAAATTATTTTTACTATGTTGGTGATTATAAAGAATCAAGGAAGTCACATGGTATACAATCACTTGGAACAGGACCATGTGAGAATGCTAGAGATTCTCTTCTCTTTTTTATTGATCATTTCTGATCAGTATATTCGTTTGAAAAAATTAATAATAATTAGCTAAGTATATAGTGGTTGTTATTATATTAAATATATAAAATTGGAAACTGATATTACAAAAAAACAGTTTGTTTGGCTGTGGAATAGGTACAATTATTATGATGAAAAGGATGATGAGAAAGAGCAATTATTAGAATGGAGGATTACAGGTGGTGATTGGATCAAATAACAAAAGAGGGTGAGAGGCTGCTCAGAGCAATGCTATTATTAGAGATATTCTGCAGTAGCTCTTCTAATTAATTATATAATTTCCAATTTTA</genome_strand>
        <mrna_strand>GACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCAT.............................................................................AAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGTCACAGACAATGGGCCTTCCAGCCCATATCTATTCTCCAACACCTGCTGCCCCTATTCCAACCCTTATGTCAAAGCCCACATCAATTCCTCCTACTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGGCTGTGGAATAGGTACAATTATTATGATGAAAAGGATGATGAGAAAGAGCAATTATTAGAATGGAGGATTACAGGTGGTGATTGGATCAAATAACAAAAGAGGGTGAGAGGCTGCTCAGAGCAATGCTATTATTAGAGATATTCTGCAGTAGCTCTTCTAATTAATTATATAATTTCCAATTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550099" ref_strand="+" ref_description="SGN-E550099 [TUS-5-C33](-)">
      <seq>caacaaggacctaatgtggttggagcaagggctaattcagcatcacctgcaagtcacgtgcagtggtactatccccaagctgcacctccggcttcaccctttcaccatcatcagcctcttcctttctatgggtattctccagcttatattgccacagacatgaactacaatcataaagtaagctacaatggtgggggctacgtgaatggtcatttttctcaagtgtatccaggtcaggcaatgatgccagtgtaccacccatactatcagtttcatcatcagtcacagacaatgggccttccagcccatatctattctccaacacctgctgcccctattccaacccttatgtcaaagcccacatcaattcctcctactgcagtttgtttggctgtggaataggtacaattattatgatgaaaaggatgatgagaaagagcaattattagaatggaggattacaggtggtgattggatcaaataacaaaagagggtgagaggctgctcagagcaatgctattattagagatattctgcagtagctcttctaattaattatataatttccaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="121133" stop="118641"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120830" g_stop="120707" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="131" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120706" i_stop="120285" i_length="422">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120284" g_stop="120242" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="132" r_stop="174" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="120241" i_stop="120165" i_length="77">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120164" g_stop="119957" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="382" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="119956" i_stop="119133" i_length="824">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.697" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="119132" g_stop="118941" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="574" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E550099" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120830" e_stop="120707"/>
          <exon e_start="120284" e_stop="120242"/>
          <exon e_start="120164" e_stop="119957"/>
          <exon e_start="119132" e_stop="118941"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGGGTAAATAAAAATTAATTTACTCTCTAATCTTTTCATTTTTAATTTGGATCTCCATAATCCTAGTTTAATTAGCTTCGACCTTTTTCTTACTAACAAGATCCCCTCCTTTCTTTTTTGGCTAACATGGTCAAAATTAGCCCGGACATTAATAAATTAAGTCATAATAATTAATGCTACGCAAGATAAAATGGTAGATCTTTTTTTATTTTCTCTTAGAGATCAATTTTAAATGACAAAGCTATTAAGTATCTTAAATCCTTTCTAGTGAATAAAAAAGAGGGAGTACTACCTTTGACATATTCTAAAAAGAAGTATGATATGTAGTTCCAATATTTATTTTACAAAGCTGACATAACCATGATCAAATTATTTTAAATTGAAAAACGTAGACATAATTATATCAAATTTTGGTATGTTTGCAGGTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCATGTAAGTTTTCATTATGAGGGTGCATTGAAAAATTTGGACTTTTTGGAAATTGAAGTATATTAAATTTTGGTGCACAGAAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGTCACAGACAATGGGCCTTCCAGCCCATATCTATTCTCCAACACCTGCTGCCCCTATTCCAACCCTTATGTCAAAGCCCACATCAATTCCTCCTACTGCAGGTACTCCCTCCCTAGAATATAATATTCTACCTTAATATAAGATTTAAATTATTTTTAATATAATGAAAAATAAATGATGCTCTCACGTAGGGTTATAATATTAATTTCTTAATGGCCTGGATGCTTCTTCCAACGCACATCCACGTGCTGTTTGGAGAATATATTCAACATCAAAATCTGCTACAGAGTGGCATAAATCTTCTCATCATATCCATAGGTCAACAAGGGTAGAAAAAGTAAAAAGGAATTCTTCATTACATTACAATAGAGTATAGACTAGAGGATTATTTAAATTTTTTACCTACACATTATTTTTTCCTATTCATTTTCGAAAGTGGCCAAGATATTTTAATACTTTCAATTTAATTATTCAAATGATACTCGAACATTATGAATAACGATTATTTTTTTATTCTAATTTATTTGTTTGATCTAAATGGAATATGAAACTTAATTTTTTTTATAGTCTTGAATCAAAGATCTGTTGAATAAAAGGTTGGTTTTTTTTTTCTAAACAAATTATGAGAAAGAGTAAAGAAAGGAAATTAAAAGTAATGCTACAATTAGTAATAATATAAGTGTGAAAAATATTTCAAGAAATTATTTTTACTATGTTGGTGATTATAAAGAATCAAGGAAGTCACATGGTATACAATCACTTGGAACAGGACCATGTGAGAATGCTAGAGATTCTCTTCTCTTTTTTATTGATCATTTCTGATCAGTATATTCGTTTGAAAAAATTAATAATAATTAGCTAAGTATATAGTGGTTGTTATTATATTAAATATATAAAATTGGAAACTGATATTACAAAAAAACAGTTTGTTTGGCTGTGGAATAGGTACAATTATTATGATGAAAAGGATGATGAGAAAGAGCAATTATTAGAATGGAGGATTACAGGTGGTGATTGGATCAAATAACAAAAGAGGGTGAGAGGCTGCTCAGAGCAATGCTATTATTAGAGATATTCTGCAGTAGCTCTTCTAATTAATTATATAATTTCCAATTTT</genome_strand>
        <mrna_strand>GACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCAT.............................................................................AAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGTCACAGACAATGGGCCTTCCAGCCCATATCTATTCTCCAACACCTGCTGCCCCTATTCCAACCCTTATGTCAAAGCCCACATCAATTCCTCCTACTGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGGCTGTGGAATAGGTACAATTATTATGATGAAAAGGATGATGAGAAAGAGCAATTATTAGAATGGAGGATTACAGGTGGTGATTGGATCAAATAACAAAAGAGGGTGAGAGGCTGCTCAGAGCAATGCTATTATTAGAGATATTCTGCAGTAGCTCTTCTAATTAATTATATAATTTCCAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E550453" ref_strand="+" ref_description="SGN-E550453 [TUS-5-C33]">
      <seq>tttctcaagtttatatagtcttgaacaagttgtttttttcaagtcctctattttctgtcttttgaagtctaattaaacttcattcattagtcctctctctatagatgacgatgagcaacatgggtgatacgacgcttacaaaggtgtttgtaggagggttggcatgggaaacacctaaggaagccatgaaagaacactttgacaagtatggtgacatcttggaagctgtcatcatctccgataagatcaccggaagatccaaaggctatggctttgtgacctttaaggatgcagaatcagccaaaaaagcatgcgaggatgccactccaattatcaacgggcgccgagccaactgtaatctcgcgtccctcggcgcccgtcgttcccgcccctctccctctattactccccctcctcctcctcctcctcaacaaggacctaatgtggttggagcaagggctaattcagcatcacctgcaagtcacgtgcagtggtactatccccaagctgcacctccggcttcaccctttcaccatcatcagcctcttcctttctatgggtattctccagcttatattgccacagacatgaactacaatcataaagtaagctacaatggtgggggctacgtgaatggtcatttttctcaagtgtatccaggtcaggcaatgatgccagtgtaccacccatactatcagtttcatcatcagtcacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="121995" stop="119751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121695" g_stop="121421" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121420" i_stop="121325" i_length="96">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121324" g_stop="121165" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="435" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121164" i_stop="120831" i_length="334">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120830" g_stop="120707" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="559" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120706" i_stop="120285" i_length="422">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120284" g_stop="120242" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="560" r_stop="602" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120241" i_stop="120165" i_length="77">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120164" g_stop="120051" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="716" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E550453" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550453" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121695" e_stop="121421"/>
          <exon e_start="121324" e_stop="121165"/>
          <exon e_start="120830" e_stop="120707"/>
          <exon e_start="120284" e_stop="120242"/>
          <exon e_start="120164" e_stop="120051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAAGTTTATATAGTCTTGAACAAGTTGTTTTTTTCAAGTCCTCTATTTTCTGTCTTTTGAAGTCTAATTAAACTTCATTCATTAGTCCTCTCTCTATAGATGACGATGAGCAACATGGGTGATACGACGCTTACAAAGGTGTTTGTAGGAGGGTTGGCATGGGAAACACCTAAGGAAGCCATGAAAGAACACTTTGACAAGTATGGTGACATCTTGGAAGCTGTCATCATCTCCGATAAGATCACCGGAAGATCCAAAGGCTATGGCTTTGTGTGTTATCAATTTATTTAAATCTCAATCACAAATTATTACCAACATTAAATAGTGTATGACTCAAGGTTTTTTTCACCTCTTTTGGATATCTAGGTGACCTTTAAGGATGCAGAATCAGCCAAAAAAGCATGCGAGGATGCCACTCCAATTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGTCCCTCGGCGCCCGTCGTTCCCGCCCCTCTCCCTCTATTACTCCCCCTCCTCCTCCTCCTCCTCAACAAGGTACCTCTTATGGAAAATTTTATTATATGCATTCAATTTTTATGAGACAAGTATATTATAAAAACATTCTTTCTCAAATTACTAATAGCCTTAAATTTACCAGACTAACTAGATTTCCATATAAATTTTCAATCTGTCATATGACATAGCAAGTAGTCTTAAAATTTTATAAAAATATTTGTAAATTTAACTAAAATTTATGGGTGAATATCACTCATGTTACAAGATCAAGGTGCATTTAAGTTTAATTAGTCAAGTAATAAGGTGTTTTTATTAATGATTAAAAAGTATGTGAAGTGTAACTTTTATTTTTTTTAATTGAAAAATGTTGAAGGACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGGGTAAATAAAAATTAATTTACTCTCTAATCTTTTCATTTTTAATTTGGATCTCCATAATCCTAGTTTAATTAGCTTCGACCTTTTTCTTACTAACAAGATCCCCTCCTTTCTTTTTTGGCTAACATGGTCAAAATTAGCCCGGACATTAATAAATTAAGTCATAATAATTAATGCTACGCAAGATAAAATGGTAGATCTTTTTTTATTTTCTCTTAGAGATCAATTTTAAATGACAAAGCTATTAAGTATCTTAAATCCTTTCTAGTGAATAAAAAAGAGGGAGTACTACCTTTGACATATTCTAAAAAGAAGTATGATATGTAGTTCCAATATTTATTTTACAAAGCTGACATAACCATGATCAAATTATTTTAAATTGAAAAACGTAGACATAATTATATCAAATTTTGGTATGTTTGCAGGTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCATGTAAGTTTTCATTATGAGGGTGCATTGAAAAATTTGGACTTTTTGGAAATTGAAGTATATTAAATTTTGGTGCACAGAAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGTCACAG</genome_strand>
        <mrna_strand>TTTCTCAAGTTTATATAGTCTTGAACAAGTTGTTTTTTTCAAGTCCTCTATTTTCTGTCTTTTGAAGTCTAATTAAACTTCATTCATTAGTCCTCTCTCTATAGATGACGATGAGCAACATGGGTGATACGACGCTTACAAAGGTGTTTGTAGGAGGGTTGGCATGGGAAACACCTAAGGAAGCCATGAAAGAACACTTTGACAAGTATGGTGACATCTTGGAAGCTGTCATCATCTCCGATAAGATCACCGGAAGATCCAAAGGCTATGGCTTT................................................................................................GTGACCTTTAAGGATGCAGAATCAGCCAAAAAAGCATGCGAGGATGCCACTCCAATTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGTCCCTCGGCGCCCGTCGTTCCCGCCCCTCTCCCTCTATTACTCCCCCTCCTCCTCCTCCTCCTCAACAAG..............................................................................................................................................................................................................................................................................................................................................GACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCAT.............................................................................AAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGTCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E389746" ref_strand="+" ref_description="SGN-E389746 [TUS-4-C21]">
      <seq>tttctcaagtttatatagtcttgaacaagttgtttttttcaagtcctctattttctgtcttttgaagtctaattaaacttcattcattagtcctctctctatagatgacgatgagcaacatgggtgatacgacgcttacaaaggtgtttgtaggagggttggcatgggaaacacctaaggaagccatgaaagaacactttgacaagtatggtgacatcttggaagctgtcatcatctccgataagatcaccggaagatccaaaggctatggctttgtgacctttaaggatgcagaatcagccaaaaaagcatgcgaggatgccactccaatttatcaacgggcgccgagccaactgtaatctcgcgtccctcggcgcccgtcgttcccgcccctctccctctattactccccctcctcctcctcctcctcaacaaggacctaatgtggttggagcaagggctaattcagcatcacctgcaagtcacgtgcagtggtactatccccaagctgcacctccggcttcaccctttcaccatcatcagcctcttcctttctatgggtattctccagcttatattgccacagacatgaactacaatcataaagtaagctacaatggtgggggctacgtgaatggtcatttttctncagtgtatccaggtcaggcaatgatgccagtgtaccaccatactatcagtttcatcatcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="121995" stop="119756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121695" g_stop="121421" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="275" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121420" i_stop="121325" i_length="96">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121324" g_stop="121165" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="436" r_length="161" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121164" i_stop="120831" i_length="334">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="120830" g_stop="120707" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="560" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="120706" i_stop="120285" i_length="422">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="120284" g_stop="120242" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="561" r_stop="603" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="120241" i_stop="120165" i_length="77">
            <donor d_prob="0.845" d_score="1.00"/>
            <acceptor a_prob="0.835" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="120164" g_stop="120056" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="711" r_length="108" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E389746" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121695" e_stop="121421"/>
          <exon e_start="121324" e_stop="121165"/>
          <exon e_start="120830" e_stop="120707"/>
          <exon e_start="120284" e_stop="120242"/>
          <exon e_start="120164" e_stop="120056"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCAAGTTTATATAGTCTTGAACAAGTTGTTTTTTTCAAGTCCTCTATTTTCTGTCTTTTGAAGTCTAATTAAACTTCATTCATTAGTCCTCTCTCTATAGATGACGATGAGCAACATGGGTGATACGACGCTTACAAAGGTGTTTGTAGGAGGGTTGGCATGGGAAACACCTAAGGAAGCCATGAAAGAACACTTTGACAAGTATGGTGACATCTTGGAAGCTGTCATCATCTCCGATAAGATCACCGGAAGATCCAAAGGCTATGGCTTTGTGTGTTATCAATTTATTTAAATCTCAATCACAAATTATTACCAACATTAAATAGTGTATGACTCAAGGTTTTTTTCACCTCTTTTGGATATCTAGGTGACCTTTAAGGATGCAGAATCAGCCAAAAAAGCATGCGAGGATGCCACTCCAA-TTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGTCCCTCGGCGCCCGTCGTTCCCGCCCCTCTCCCTCTATTACTCCCCCTCCTCCTCCTCCTCCTCAACAAGGTACCTCTTATGGAAAATTTTATTATATGCATTCAATTTTTATGAGACAAGTATATTATAAAAACATTCTTTCTCAAATTACTAATAGCCTTAAATTTACCAGACTAACTAGATTTCCATATAAATTTTCAATCTGTCATATGACATAGCAAGTAGTCTTAAAATTTTATAAAAATATTTGTAAATTTAACTAAAATTTATGGGTGAATATCACTCATGTTACAAGATCAAGGTGCATTTAAGTTTAATTAGTCAAGTAATAAGGTGTTTTTATTAATGATTAAAAAGTATGTGAAGTGTAACTTTTATTTTTTTTAATTGAAAAATGTTGAAGGACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGGGTAAATAAAAATTAATTTACTCTCTAATCTTTTCATTTTTAATTTGGATCTCCATAATCCTAGTTTAATTAGCTTCGACCTTTTTCTTACTAACAAGATCCCCTCCTTTCTTTTTTGGCTAACATGGTCAAAATTAGCCCGGACATTAATAAATTAAGTCATAATAATTAATGCTACGCAAGATAAAATGGTAGATCTTTTTTTATTTTCTCTTAGAGATCAATTTTAAATGACAAAGCTATTAAGTATCTTAAATCCTTTCTAGTGAATAAAAAAGAGGGAGTACTACCTTTGACATATTCTAAAAAGAAGTATGATATGTAGTTCCAATATTTATTTTACAAAGCTGACATAACCATGATCAAATTATTTTAAATTGAAAAACGTAGACATAATTATATCAAATTTTGGTATGTTTGCAGGTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCATGTAAGTTTTCATTATGAGGGTGCATTGAAAAATTTGGACTTTTTGGAAATTGAAGTATATTAAATTTTGGTGCACAGAAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGT</genome_strand>
        <mrna_strand>TTTCTCAAGTTTATATAGTCTTGAACAAGTTGTTTTTTTCAAGTCCTCTATTTTCTGTCTTTTGAAGTCTAATTAAACTTCATTCATTAGTCCTCTCTCTATAGATGACGATGAGCAACATGGGTGATACGACGCTTACAAAGGTGTTTGTAGGAGGGTTGGCATGGGAAACACCTAAGGAAGCCATGAAAGAACACTTTGACAAGTATGGTGACATCTTGGAAGCTGTCATCATCTCCGATAAGATCACCGGAAGATCCAAAGGCTATGGCTTT................................................................................................GTGACCTTTAAGGATGCAGAATCAGCCAAAAAAGCATGCGAGGATGCCACTCCAATTTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGTCCCTCGGCGCCCGTCGTTCCCGCCCCTCTCCCTCTATTACTCCCCCTCCTCCTCCTCCTCCTCAACAAG..............................................................................................................................................................................................................................................................................................................................................GACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGG......................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCAT.............................................................................AAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTNCAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCA-CCATACTATCAGTTTCATCATCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E209654" ref_strand="+" ref_description="SGN-E209654 [cLEC-54-P17]">
      <seq>ttctcaagtttatatagtcttgaacaagttgtttttttcaagtcctctattttctgtcttttgaagtctaattaaacttcattcattagtcctctctctatagatgacgatgagcaacatgggtgatacgacgcttacaaaggtgtttgtaggagggttggcatgggaaacacctaaggaagccatgaaagaacactttgacaagtatggtgacatcttggaagctgtcatcatctccgataagatcaccggaagatccaaaggctatggctttgggacctttaaggatgcagaatcagccaaaaaagcatgcgaggatgccactccaattatcaacgggcgccgagccaactgtaatctcgcggccctcggcgcccgtcgttcccgcccctctccctcttattactccccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0311A10-xI8A2/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04HBa0311A10.1" temp_strand="-" temp_description="C04HBa0311A10.1  CU222537.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0311A10 sequenced_by:sanger upload_account_name:uk">
        <position start="121994" stop="120888"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="121694" g_stop="121421" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="274" r_length="274" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="121420" i_stop="121325" i_length="96">
            <donor d_prob="0.851" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="121324" g_stop="121188" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="275" r_stop="412" r_length="138" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0311A10.1" gen_strand="-" ref_id="SGN-E209654" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0311A10.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209654" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="121694" e_stop="121421"/>
          <exon e_start="121324" e_stop="121188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAAGTTTATATAGTCTTGAACAAGTTGTTTTTTTCAAGTCCTCTATTTTCTGTCTTTTGAAGTCTAATTAAACTTCATTCATTAGTCCTCTCTCTATAGATGACGATGAGCAACATGGGTGATACGACGCTTACAAAGGTGTTTGTAGGAGGGTTGGCATGGGAAACACCTAAGGAAGCCATGAAAGAACACTTTGACAAGTATGGTGACATCTTGGAAGCTGTCATCATCTCCGATAAGATCACCGGAAGATCCAAAGGCTATGGCTTTGTGTGTTATCAATTTATTTAAATCTCAATCACAAATTATTACCAACATTAAATAGTGTATGACTCAAGGTTTTTTTCACCTCTTTTGGATATCTAGGTGACCTTTAAGGATGCAGAATCAGCCAAAAAAGCATGCGAGGATGCCACTCCAATTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGTCCCTCGGCGCCCGTCGTTCCCGCCCCTCTCCCTC-TATTACTCCCCC</genome_strand>
        <mrna_strand>TTCTCAAGTTTATATAGTCTTGAACAAGTTGTTTTTTTCAAGTCCTCTATTTTCTGTCTTTTGAAGTCTAATTAAACTTCATTCATTAGTCCTCTCTCTATAGATGACGATGAGCAACATGGGTGATACGACGCTTACAAAGGTGTTTGTAGGAGGGTTGGCATGGGAAACACCTAAGGAAGCCATGAAAGAACACTTTGACAAGTATGGTGACATCTTGGAAGCTGTCATCATCTCCGATAAGATCACCGGAAGATCCAAAGGCTATGGCTTT................................................................................................GGGACCTTTAAGGATGCAGAATCAGCCAAAAAAGCATGCGAGGATGCCACTCCAATTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGGCCCTCGGCGCCCGTCGTTCCCGCCCCTCTCCCTCTTATTACTCCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="6184" PGL_stop="5854"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="6184" e_stop="5854"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="6184" e_stop="5854" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6184" stop="5854"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCCAATGTCACCGTTTTGGCATTGCAATCTAAGATTGCGAAGTTTGGAGAAAGCCAAGTCATACCCAGAATTACATCGAAATCAACCATTTATAAGATAACCAAGTCTACATGAGTATTGCTCTCCATAAAAGTCACAGGACAAGACCTATACACCTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAAGCATGTCAAGCAATTCACAATGTAAATTAAGACCAGTAGCAAATGAAGAAGATACATATGAAAATGTGGATCCAGGATCAAATAATACAGAAGCCATGGAATCATAAATCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  P  M  S  P  F  W  H  C  N  L  R  L  R  S  L  E  K  A  K  S  Y  P  E  L  H  R  N  Q  P  F  I  R  *  P  S  L  H  E  Y  C  S  P  *  K  S  Q  D  K  T  Y  T  P  F  Q  L  S  Q  T  H  P  P  E  *  K  H  E  *  A  C  Q  A  I  H  N  V  N  *  D  Q  *  Q  M  K  K  I  H  M  K  M  W  I  Q  D  Q  I  I  Q  K  P  W  N  H  K  S  </first_frame>
            <second_frame>  I  C  P  R  L  G  Q  C  H  R  F  G  I  A  I  *  D  C  E  V  W  R  K  P  S  H  T  Q  N  Y  I  E  I  N  H  L  *  D  N  Q  V  Y  M  S  I  A  L  H  K  S  H  R  T  R  P  I  H  L  F  N  Y  H  R  L  T  H  R  S  R  N  T  N  K  H  V  K  Q  F  T  M  *  I  K  T  S  S  K  *  R  R  Y  I  *  K  C  G  S  R  I  K  *  Y  R  S  H  G  I  I  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  S  Q  V  I  P  R  I  T  S  K  S  T  I  Y  K  I  T  K  S  T  *  V  L  L  S  I  K  V  T  G  Q  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  E  T  R  I  S  M  S  S  N  S  Q  C  K  L  R  P  V  A  N  E  E  D  T  Y  E  N  V  D  P  G  S  N  N  T  E  A  M  E  S  *  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6053" stop="5859"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLSIKVTGQDLYTFSTITDSPTGVETRISMSSNSQCKLRPVANEEDTYENVDPGSNNTEAMES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="5884" PGL_stop="6545"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5884" e_stop="6545"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="5884" e_stop="6545" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5884" stop="6545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGATCCTGGATCCACATTTTCATATGTATCTTCTTCATTTGCTACTGGTCTTAATTTACATTGTGAATTGCTTGACATGCTTATTCGTGTTTCTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTGTATAGGTCTTGTCCTGTGACTTTTATGGAGAGCAATACTCATGTAGACTTGGTTATCTTATAAATGGTTGATTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAACTTCGCAATCTTAGATTGCAATGCCAAAACGGTGACATTGGCCAAGCCTGGGACAGATCCGTTAGTGTGGGAGGGTGATTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGATAAGTGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAGTTGAGGCGGTTTCAATAGTCCGTGAGTTTCTGGATGTGTTTCCCGCAGACCTTCCTGGTATGCCACCAGATAGGGATATCGACTTTTGTATTGATCTGGAGCCGGGTACTCGCCCCATTTCCATACCCCCTTATAGGATGGCTCCCGCTGATTTAAGAGAGTTAAAGGCCCAACTTCAACTAGTTGTTAAGCAAAGGCTTTATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  S  F  A  T  G  L  N  L  H  C  E  L  L  D  M  L  I  R  V  S  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  C  P  V  T  F  M  E  S  N  T  H  V  D  L  V  I  L  *  M  V  D  F  D  V  I  L  G  M  T  W  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  D  K  *  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  V  E  A  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  D  L  R  E  L  K  A  Q  L  Q  L  V  V  K  Q  R  L  Y  *  T  K  C  I  P  L   </first_frame>
            <second_frame>  L  I  L  D  P  H  F  H  M  Y  L  L  H  L  L  L  V  L  I  Y  I  V  N  C  L  T  C  L  F  V  F  L  L  R  W  V  S  L  *  *  L  K  R  C  I  G  L  V  L  *  L  L  W  R  A  I  L  M  *  T  W  L  S  Y  K  W  L  I  S  M  *  F  W  V  *  L  G  F  L  Q  T  S  Q  S  *  I  A  M  P  K  R  *  H  W  P  S  L  G  Q  I  R  *  C  G  R  V  I  T  L  P  L  Q  F  V  S  S  P  S  F  V  I  S  E  W  L  E  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  Q  L  R  R  F  Q  *  S  V  S  F  W  M  C  F  P  Q  T  F  L  V  C  H  Q  I  G  I  S  T  F  V  L  I  W  S  R  V  L  A  P  F  P  Y  P  L  I  G  W  L  P  L  I  *  E  S  *  R  P  N  F  N  *  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </second_frame>
            <third_frame>   *  S  W  I  H  I  F  I  C  I  F  F  I  C  Y  W  S  *  F  T  L  *  I  A  *  H  A  Y  S  C  F  Y  S  G  G  *  V  C  D  S  *  K  G  V  *  V  L  S  C  D  F  Y  G  E  Q  Y  S  C  R  L  G  Y  L  I  N  G  *  F  R  C  N  S  G  Y  D  L  A  F  S  K  L  R  N  L  R  L  Q  C  Q  N  G  D  I  G  Q  A  W  D  R  S  V  S  V  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  P  S  *  *  V  N  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  S  *  G  G  F  N  S  P  *  V  S  G  C  V  S  R  R  P  S  W  Y  A  T  R  *  G  Y  R  L  L  Y  *  S  G  A  G  Y  S  P  H  F  H  T  P  L  *  D  G  S  R  *  F  K  R  V  K  G  P  T  S  T  S  C  *  A  K  A  L  L  D  Q  V  H  P  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6253" stop="6525"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MVRKGCLAFLAHLRDDTTQVPSVEAVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPADLRELKAQLQLVVKQRLY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5884" stop="6078"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSSFATGLNLHCELLDMLIRVSTPVGESVIVEKVYRSCPVTFMESNTHVDLVIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="8436" PGL_stop="7405"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8436" e_stop="7405"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="8436" e_stop="7405" e_length="1032"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8436" stop="7895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7991" stop="7405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352950" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7991" stop="7405"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357100" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7991" stop="7438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352647" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTTTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGTCCGGAATGAAATGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACTTACCCATCGTCTTTGGATGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAAGCCTCTGGTGTTCATACTTTACCTAATGACAATTCAGGCATTGAGCAACGAAATCAACAATGTCCCGCTTCATCCTACTCCACCAAAAATATTGCTTTAGGTCACGGTACATCTTGGTTGCACCAGGATGTATAGATTACCTTGAACTATGAGCCTCTGTAAGAATAGTGTGAATCAAGTCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTCCTCATCGATTTTTGCTTCTTTAGCCTCTCCTCTCATCACCTTATCTAGGATCCGAATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAAGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGAAACCTGCAAGTGGGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTTCCACCACATTAGCTTTTCCCGGATGATACAAGATAGTGATATCATAGTCCTTCAATAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACAATGATCTCTATAGACTTCACACTTAACCCCATATAGATAATGCCTTCATTCCTTTAATGCAAACACTACCGCAGCCAACTCCAAATCATGGGTAGGATAATTACGTTCATGCACCTTTAATTGC</gDNA_template>
            <first_frame> S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  D  M  M  E  S  G  T  P  C  N  R  T  I  F  E  M  *  I  L  A  N  F  S  A  L  *  V  T  L  S  G  M  K  *  A  D  L  V  N  L  S  T  I  T  Q  I  E  S  Y  L  P  I  V  F  G  *  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  S  L  W  C  S  Y  F  T  *  *  Q  F  R  H  *  A  T  K  S  T  M  S  R  F  I  L  L  H  Q  K  Y  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  D  Y  L  E  L  *  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  S  S  S  I  F  A  S  L  A  S  P  L  I  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  I  K  S  L  A  R  V  *  T  S  L  A  N  G  R  L  E  T  C  K  W  A  R  L  P  M  L  P  A  F  L  L  K  A  S  S  T  T  L  A  F  P  G  *  Y  K  I  V  I  S  *  S  F  N  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  Q  *  S  L  *  T  S  H  L  T  P  Y  R  *  C  L  H  S  F  N  A  N  T  T  A  A  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N  C </first_frame>
            <second_frame>  Q  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  L  H  A  I  E  Q  F  L  R  C  K  F  W  L  T  S  L  H  Y  K  S  P  C  P  E  *  N  E  Q  T  *  L  I  C  Q  Q  S  P  K  *  S  H  T  Y  P  S  S  L  D  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  V  H  T  L  P  N  D  N  S  G  I  E  Q  R  N  Q  Q  C  P  A  S  S  Y  S  T  K  N  I  A  L  G  H  G  T  S  W  L  H  Q  D  V  *  I  T  L  N  Y  E  P  L  *  E  *  C  E  S  S  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  P  H  R  F  L  L  L  *  P  L  L  S  S  P  Y  L  G  S  E  S  V  S  H  R  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  A  S  *  S  H  *  P  E  S  E  P  L  *  P  M  G  V  *  K  P  A  S  G  L  D  F  P  C  S  L  P  F  Y  L  R  H  L  P  P  H  *  L  F  P  D  D  T  R  *  *  Y  H  S  P  S  I  V  P  S  I  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  N  D  L  Y  R  L  H  T  *  P  H  I  D  N  A  F  I  P  L  M  Q  T  L  P  Q  P  T  P  N  H  G  *  D  N  Y  V  H  A  P  L  I   </second_frame>
            <third_frame>   S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  *  Y  D  G  E  W  N  S  M  Q  S  N  N  F  *  D  V  N  F  G  *  L  L  C  I  I  S  H  L  V  R  N  E  M  S  R  L  S  *  S  V  N  N  H  P  N  R  V  I  L  T  H  R  L  W  M  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  K  P  L  V  F  I  L  Y  L  M  T  I  Q  A  L  S  N  E  I  N  N  V  P  L  H  P  T  P  P  K  I  L  L  *  V  T  V  H  L  G  C  T  R  M  Y  R  L  P  *  T  M  S  L  C  K  N  S  V  N  Q  V  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  D  F  C  F  F  S  L  S  S  H  H  L  I  *  D  P  N  Q  F  L  I  G  K  L  L  S  F  N  L  I  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  G  *  T  S  H  A  P  C  L  S  T  *  G  I  F  H  H  I  S  F  S  R  M  I  Q  D  S  D  I  I  V  L  Q  *  F  H  P  S  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  S  I  D  F  T  L  N  P  I  *  I  M  P  S  F  L  *  C  K  H  Y  R  S  Q  L  Q  I  M  G  R  I  I  T  F  M  H  L  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="7971" stop="7732"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPSSSIFASLASPLITLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPFSFTSSLIKSLARV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8246" stop="8010"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>234</number_coding_nucleotides>
                  <number_encoded_amino_acids>78</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTYPSSLDDQPRSPLQFSPTSIQEWAFSEVSLQASGVHTLPNDNSGIEQRNQQCPASSYSTKNIALGHGTSWLHQDV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8269" stop="8045"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SVNNHPNRVILTHRLWMTNHEVHCNSLPLPFRNGHSLKCPSKPLVFILYLMTIQALSNEINNVPLHPTPPKILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="30431" PGL_stop="28525"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30431" e_stop="29460"/>
            <exon e_start="28785" e_stop="28525"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.977" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30431" e_stop="29460" e_length="972"/>
          </exon>
          <intron i_serial="1" don_prob="0.977" acc_prob="0.996">
            <gDNA_intron_boundary i_start="29459" i_stop="28786" i_length="674"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="28785" e_stop="28525" e_length="261"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30431" stop="29820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550668" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30431" stop="29820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30430" stop="29975"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269868" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29917" stop="29460"/>
              <exon start="28785" stop="28525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E380063" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29914" stop="29460"/>
              <exon start="28785" stop="28545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="29914" stop="29524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209362" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAAACAAGTGCTTATGCTCCCAAAGTGTTGACCACTGCGTCTGTATCTCCTAAAACATCCTTTCGTATTGGTGAATGCATTCAAAGAGTGGCAAGCCAATTAACTCGCTCAGCCTCGCTTCTGAAGGGCAGCAGTGATCAAAGTGGGGCTGATGTTCAATCACAGGACTCTCCAAAGGGCAAAGTTGTGATTCCAACTGAACTACCTTCTGCAAATGAGTTGCTCTCACAGCTTCAGTTGGTGGCACGGGCTCCAATGAAAGGCTACAACTTAAAAACCATCACGAATTTCTTTTCAGGTTTTAGAAATTCGGTTGCTGTGGGGCAAAAATCAATGAAGCAGAATTTGTCGGCGGGTAGAGCTGCTGGTGGTCGTAAGAAAAGAGCTTCACAAACTGTGGCTGGTTTTGCTGAAGAATTCGAGTTTGATGATGTAAATGATTCTTATTGGACAGACAGGGTTGTACAAAACTGTGGAGAGGAGCAGCCATTGCAGAATAATCAGAGTGTGACGGTTCAAGATCCAGAGAAATCCAGTAAACCAGCTCGTAGATCATACACTAGAAAACGAAAATCGAGTGTCGATCATGACATGACACCAGGCGTTCCTCCTGAGGACATTGAGAAGAGGAAACATGAGCCAGCAGAACTCATTTTAATTTTTGCAGAGGGTAGTCCTCTTCCATCTGAAATGAACCTTAATAAAATGTTTAGGCGGTTTGGGCCATTGAAGGAATTAGAAACTGAAGTTCATCAGGAGTCTTCTCGTGCTAGAGTAGTCTTTAAAAGGGGTTCTGACGCAGAGGTTGCTCATAGTAGTGTAGGAAAGTTCAACATCTTTGGGTCACGGCAAGTGACATATGAACTCAGCTACACACCAGTTATCTCATTTAAGCCGATGCTCCTTACAGTTACGCCAGGCCTGGAGGGAGTTATTTGATGCTTCAGCTCCAAAGTGGATAACAGCTTGAG : GTTAAACAAGAAATGATTATTATTGCAGGGAAGGCCAACAGTAGCATCTTTCTTTCATTAGAAGATAGCGGGTGAATGCCATCTTTTTGTAAAGATTAAAACTTTATTTCTGTCTGTATTTTCTTCTCTTTCTATTTCCCCAGAGTTTCTCTCCTGCTCCATTAGAAATGACATCGATCAACTTCCCAGTTCCCTCTTTATCTTTATGGATAAAGTATATTAGAAAATCATTTACTATCAAATTATTCAAGTGGGATGGGC</gDNA_template>
            <first_frame> E  N  K  C  L  C  S  Q  S  V  D  H  C  V  C  I  S  *  N  I  L  S  Y  W  *  M  H  S  K  S  G  K  P  I  N  S  L  S  L  A  S  E  G  Q  Q  *  S  K  W  G  *  C  S  I  T  G  L  S  K  G  Q  S  C  D  S  N  *  T  T  F  C  K  *  V  A  L  T  A  S  V  G  G  T  G  S  N  E  R  L  Q  L  K  N  H  H  E  F  L  F  R  F  *  K  F  G  C  C  G  A  K  I  N  E  A  E  F  V  G  G  *  S  C  W  W  S  *  E  K  S  F  T  N  C  G  W  F  C  *  R  I  R  V  *  *  C  K  *  F  L  L  D  R  Q  G  C  T  K  L  W  R  G  A  A  I  A  E  *  S  E  C  D  G  S  R  S  R  E  I  Q  *  T  S  S  *  I  I  H  *  K  T  K  I  E  C  R  S  *  H  D  T  R  R  S  S  *  G  H  *  E  E  E  T  *  A  S  R  T  H  F  N  F  C  R  G  *  S  S  S  I  *  N  E  P  *  *  N  V  *  A  V  W  A  I  E  G  I  R  N  *  S  S  S  G  V  F  S  C  *  S  S  L  *  K  G  F  *  R  R  G  C  S  *  *  C  R  K  V  Q  H  L  W  V  T  A  S  D  I  *  T  Q  L  H  T  S  Y  L  I  *  A  D  A  P  Y  S  Y  A  R  P  G  G  S  Y  L  M  L  Q  L  Q  S  G  *  Q  L  E  :  V  K  Q  E  M  I  I  I  A  G  K  A  N  S  S  I  F  L  S  L  E  D  S  G  *  M  P  S  F  C  K  D  *  N  F  I  S  V  C  I  F  F  S  F  Y  F  P  R  V  S  L  L  L  H  *  K  *  H  R  S  T  S  Q  F  P  L  Y  L  Y  G  *  S  I  L  E  N  H  L  L  S  N  Y  S  S  G  M  G </first_frame>
            <second_frame>  K  T  S  A  Y  A  P  K  V  L  T  T  A  S  V  S  P  K  T  S  F  R  I  G  E  C  I  Q  R  V  A  S  Q  L  T  R  S  A  S  L  L  K  G  S  S  D  Q  S  G  A  D  V  Q  S  Q  D  S  P  K  G  K  V  V  I  P  T  E  L  P  S  A  N  E  L  L  S  Q  L  Q  L  V  A  R  A  P  M  K  G  Y  N  L  K  T  I  T  N  F  F  S  G  F  R  N  S  V  A  V  G  Q  K  S  M  K  Q  N  L  S  A  G  R  A  A  G  G  R  K  K  R  A  S  Q  T  V  A  G  F  A  E  E  F  E  F  D  D  V  N  D  S  Y  W  T  D  R  V  V  Q  N  C  G  E  E  Q  P  L  Q  N  N  Q  S  V  T  V  Q  D  P  E  K  S  S  K  P  A  R  R  S  Y  T  R  K  R  K  S  S  V  D  H  D  M  T  P  G  V  P  P  E  D  I  E  K  R  K  H  E  P  A  E  L  I  L  I  F  A  E  G  S  P  L  P  S  E  M  N  L  N  K  M  F  R  R  F  G  P  L  K  E  L  E  T  E  V  H  Q  E  S  S  R  A  R  V  V  F  K  R  G  S  D  A  E  V  A  H  S  S  V  G  K  F  N  I  F  G  S  R  Q  V  T  Y  E  L  S  Y  T  P  V  I  S  F  K  P  M  L  L  T  V  T  P  G  L  E  G  V  I  *  C  F  S  S  K  V  D  N  S  L  R :   L  N  K  K  *  L  L  L  Q  G  R  P  T  V  A  S  F  F  H  *  K  I  A  G  E  C  H  L  F  V  K  I  K  T  L  F  L  S  V  F  S  S  L  S  I  S  P  E  F  L  S  C  S  I  R  N  D  I  D  Q  L  P  S  S  L  F  I  F  M  D  K  V  Y  *  K  I  I  Y  Y  Q  I  I  Q  V  G  W   </second_frame>
            <third_frame>   K  Q  V  L  M  L  P  K  C  *  P  L  R  L  Y  L  L  K  H  P  F  V  L  V  N  A  F  K  E  W  Q  A  N  *  L  A  Q  P  R  F  *  R  A  A  V  I  K  V  G  L  M  F  N  H  R  T  L  Q  R  A  K  L  *  F  Q  L  N  Y  L  L  Q  M  S  C  S  H  S  F  S  W  W  H  G  L  Q  *  K  A  T  T  *  K  P  S  R  I  S  F  Q  V  L  E  I  R  L  L  W  G  K  N  Q  *  S  R  I  C  R  R  V  E  L  L  V  V  V  R  K  E  L  H  K  L  W  L  V  L  L  K  N  S  S  L  M  M  *  M  I  L  I  G  Q  T  G  L  Y  K  T  V  E  R  S  S  H  C  R  I  I  R  V  *  R  F  K  I  Q  R  N  P  V  N  Q  L  V  D  H  T  L  E  N  E  N  R  V  S  I  M  T  *  H  Q  A  F  L  L  R  T  L  R  R  G  N  M  S  Q  Q  N  S  F  *  F  L  Q  R  V  V  L  F  H  L  K  *  T  L  I  K  C  L  G  G  L  G  H  *  R  N  *  K  L  K  F  I  R  S  L  L  V  L  E  *  S  L  K  G  V  L  T  Q  R  L  L  I  V  V  *  E  S  S  T  S  L  G  H  G  K  *  H  M  N  S  A  T  H  Q  L  S  H  L  S  R  C  S  L  Q  L  R  Q  A  W  R  E  L  F  D  A  S  A  P  K  W  I  T  A  *   : G  *  T  R  N  D  Y  Y  C  R  E  G  Q  Q  *  H  L  S  F  I  R  R  *  R  V  N  A  I  F  L  *  R  L  K  L  Y  F  C  L  Y  F  L  L  F  L  F  P  Q  S  F  S  P  A  P  L  E  M  T  S  I  N  F  P  V  P  S  L  S  L  W  I  K  Y  I  R  K  S  F  T  I  K  L  F  K  W  D  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30430" stop="29492"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>936</number_coding_nucleotides>
                  <number_encoded_amino_acids>312</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KTSAYAPKVLTTASVSPKTSFRIGECIQRVASQLTRSASLLKGSSDQSGADVQSQDSPKGKVVIPTELPSANELLSQLQLVARAPMKGYNLKTITNFFSGFRNSVAVGQKSMKQNLSAGRAAGGRKKRASQTVAGFAEEFEFDDVNDSYWTDRVVQNCGEEQPLQNNQSVTVQDPEKSSKPARRSYTRKRKSSVDHDMTPGVPPEDIEKRKHEPAELILIFAEGSPLPSEMNLNKMFRRFGPLKELETEVHQESSRARVVFKRGSDAEVAHSSVGKFNIFGSRQVTYELSYTPVISFKPMLLTVTPGLEGVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="31060" PGL_stop="30672"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31060" e_stop="30672"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="31060" e_stop="30672" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31060" stop="30672"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323972" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAAACGCTATAAGCAGTGCTTTAGAAGAGGTTTCAAGACGGGTTGAACTTGGCCTTGCTTGCTCATGCACGCCTAAAGATTCCTATGATGAGATTTCATGTCAGATTGTGGAGAACACTGGGATTCGTGAAGAAGCAAGCAAAAGATATGGAGTGGACAAATCAACTGGAGTCACTTCCTTTGTACCTGATAAGCTCCTGCACTATATGAAAGCATTAGCCCTATCACCAACTTGTCGGGCTGATAGATTGGATCTCACTATTGCTCGAGCTCAGTTAGTTGCCTTTTGTCGCTTCAAGGGATATCGTCTGCCACCACAATTCTTGTTGAGTGGAGAACTCCTAGAAAACGATGCTGACATACCACATGTGGACAGTGCAATTGATGA</gDNA_template>
            <first_frame> Q  N  A  I  S  S  A  L  E  E  V  S  R  R  V  E  L  G  L  A  C  S  C  T  P  K  D  S  Y  D  E  I  S  C  Q  I  V  E  N  T  G  I  R  E  E  A  S  K  R  Y  G  V  D  K  S  T  G  V  T  S  F  V  P  D  K  L  L  H  Y  M  K  A  L  A  L  S  P  T  C  R  A  D  R  L  D  L  T  I  A  R  A  Q  L  V  A  F  C  R  F  K  G  Y  R  L  P  P  Q  F  L  L  S  G  E  L  L  E  N  D  A  D  I  P  H  V  D  S  A  I  D   </first_frame>
            <second_frame>  K  T  L  *  A  V  L  *  K  R  F  Q  D  G  L  N  L  A  L  L  A  H  A  R  L  K  I  P  M  M  R  F  H  V  R  L  W  R  T  L  G  F  V  K  K  Q  A  K  D  M  E  W  T  N  Q  L  E  S  L  P  L  Y  L  I  S  S  C  T  I  *  K  H  *  P  Y  H  Q  L  V  G  L  I  D  W  I  S  L  L  L  E  L  S  *  L  P  F  V  A  S  R  D  I  V  C  H  H  N  S  C  *  V  E  N  S  *  K  T  M  L  T  Y  H  M  W  T  V  Q  L  M  </second_frame>
            <third_frame>   K  R  Y  K  Q  C  F  R  R  G  F  K  T  G  *  T  W  P  C  L  L  M  H  A  *  R  F  L  *  *  D  F  M  S  D  C  G  E  H  W  D  S  *  R  S  K  Q  K  I  W  S  G  Q  I  N  W  S  H  F  L  C  T  *  *  A  P  A  L  Y  E  S  I  S  P  I  T  N  L  S  G  *  *  I  G  S  H  Y  C  S  S  S  V  S  C  L  L  S  L  Q  G  I  S  S  A  T  T  I  L  V  E  W  R  T  P  R  K  R  C  *  H  T  T  C  G  Q  C  N  *  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31060" stop="30674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>387</number_coding_nucleotides>
                  <number_encoded_amino_acids>129</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QNAISSALEEVSRRVELGLACSCTPKDSYDEISCQIVENTGIREEASKRYGVDKSTGVTSFVPDKLLHYMKALALSPTCRADRLDLTIARAQLVAFCRFKGYRLPPQFLLSGELLENDADIPHVDSAID</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="121695" PGL_stop="118940"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="121695" e_stop="121421"/>
            <exon e_start="121324" e_stop="121165"/>
            <exon e_start="120830" e_stop="120707"/>
            <exon e_start="120284" e_stop="120242"/>
            <exon e_start="120164" e_stop="119957"/>
            <exon e_start="119132" e_stop="118940"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.851" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.845" acc_prob="0.835" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.697" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="121695" e_stop="121421" e_length="275"/>
          </exon>
          <intron i_serial="1" don_prob="0.851" acc_prob="0.999">
            <gDNA_intron_boundary i_start="121420" i_stop="121325" i_length="96"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="121324" e_stop="121165" e_length="160"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="121164" i_stop="120831" i_length="334"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="120830" e_stop="120707" e_length="124"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="120706" i_stop="120285" i_length="422"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="120284" e_stop="120242" e_length="43"/>
          </exon>
          <intron i_serial="4" don_prob="0.845" acc_prob="0.835">
            <gDNA_intron_boundary i_start="120241" i_stop="120165" i_length="77"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="120164" e_stop="119957" e_length="208"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.697">
            <gDNA_intron_boundary i_start="119956" i_stop="119133" i_length="824"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="119132" e_stop="118940" e_length="193"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121695" stop="121421"/>
              <exon start="121324" stop="121165"/>
              <exon start="120830" stop="120707"/>
              <exon start="120284" stop="120242"/>
              <exon start="120164" stop="120051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550453" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121695" stop="121421"/>
              <exon start="121324" stop="121165"/>
              <exon start="120830" stop="120707"/>
              <exon start="120284" stop="120242"/>
              <exon start="120164" stop="120056"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="121694" stop="121421"/>
              <exon start="121324" stop="121188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209654" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120830" stop="120707"/>
              <exon start="120284" stop="120242"/>
              <exon start="120164" stop="119957"/>
              <exon start="119132" stop="118940"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389484" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120830" stop="120707"/>
              <exon start="120284" stop="120242"/>
              <exon start="120164" stop="119957"/>
              <exon start="119132" stop="118941"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTCTCAAGTTTATATAGTCTTGAACAAGTTGTTTTTTTCAAGTCCTCTATTTTCTGTCTTTTGAAGTCTAATTAAACTTCATTCATTAGTCCTCTCTCTATAGATGACGATGAGCAACATGGGTGATACGACGCTTACAAAGGTGTTTGTAGGAGGGTTGGCATGGGAAACACCTAAGGAAGCCATGAAAGAACACTTTGACAAGTATGGTGACATCTTGGAAGCTGTCATCATCTCCGATAAGATCACCGGAAGATCCAAAGGCTATGGCTTT : GTGACCTTTAAGGATGCAGAATCAGCCAAAAAAGCATGCGAGGATGCCACTCCAATTATCAACGGGCGCCGAGCCAACTGTAATCTCGCGTCCCTCGGCGCCCGTCGTTCCCGCCCCTCTCCCTCTATTACTCCCCCTCCTCCTCCTCCTCCTCAACAAG : GACCTAATGTGGTTGGAGCAAGGGCTAATTCAGCATCACCTGCAAGTCACGTGCAGTGGTACTATCCCCAAGCTGCACCTCCGGCTTCACCCTTTCACCATCATCAGCCTCTTCCTTTCTATGG : GTATTCTCCAGCTTATATTGCCACAGACATGAACTACAATCAT : AAAGTAAGCTACAATGGTGGGGGCTACGTGAATGGTCATTTTTCTCAAGTGTATCCAGGTCAGGCAATGATGCCAGTGTACCACCCATACTATCAGTTTCATCATCAGTCACAGACAATGGGCCTTCCAGCCCATATCTATTCTCCAACACCTGCTGCCCCTATTCCAACCCTTATGTCAAAGCCCACATCAATTCCTCCTACTGCAG : TTTGTTTGGCTGTGGAATAGGTACAATTATTATGATGAAAAGGATGATGAGAAAGAGCAATTATTAGAATGGAGGATTACAGGTGGTGATTGGATCAAATAACAAAAGAGGGTGAGAGGCTGCTCAGAGCAATGCTATTATTAGAGATATTCTGCAGTAGCTCTTCTAATTAATTATATAATTTCCAATTTTA</gDNA_template>
            <first_frame> F  L  K  F  I  *  S  *  T  S  C  F  F  Q  V  L  Y  F  L  S  F  E  V  *  L  N  F  I  H  *  S  S  L  Y  R  *  R  *  A  T  W  V  I  R  R  L  Q  R  C  L  *  E  G  W  H  G  K  H  L  R  K  P  *  K  N  T  L  T  S  M  V  T  S  W  K  L  S  S  S  P  I  R  S  P  E  D  P  K  A  M  A  L :   *  P  L  R  M  Q  N  Q  P  K  K  H  A  R  M  P  L  Q  L  S  T  G  A  E  P  T  V  I  S  R  P  S  A  P  V  V  P  A  P  L  P  L  L  L  P  L  L  L  L  L  L  N  K  :  D  L  M  W  L  E  Q  G  L  I  Q  H  H  L  Q  V  T  C  S  G  T  I  P  K  L  H  L  R  L  H  P  F  T  I  I  S  L  F  L  S  M   : G  I  L  Q  L  I  L  P  Q  T  *  T  T  I  I :   K  *  A  T  M  V  G  A  T  *  M  V  I  F  L  K  C  I  Q  V  R  Q  *  C  Q  C  T  T  H  T  I  S  F  I  I  S  H  R  Q  W  A  F  Q  P  I  S  I  L  Q  H  L  L  P  L  F  Q  P  L  C  Q  S  P  H  Q  F  L  L  L  Q  :  F  V  W  L  W  N  R  Y  N  Y  Y  D  E  K  D  D  E  K  E  Q  L  L  E  W  R  I  T  G  G  D  W  I  K  *  Q  K  R  V  R  G  C  S  E  Q  C  Y  Y  *  R  Y  S  A  V  A  L  L  I  N  Y  I  I  S  N  F  </first_frame>
            <second_frame>  F  S  S  L  Y  S  L  E  Q  V  V  F  F  K  S  S  I  F  C  L  L  K  S  N  *  T  S  F  I  S  P  L  S  I  D  D  D  E  Q  H  G  *  Y  D  A  Y  K  G  V  C  R  R  V  G  M  G  N  T  *  G  S  H  E  R  T  L  *  Q  V  W  *  H  L  G  S  C  H  H  L  R  *  D  H  R  K  I  Q  R  L  W  L   : C  D  L  *  G  C  R  I  S  Q  K  S  M  R  G  C  H  S  N  Y  Q  R  A  P  S  Q  L  *  S  R  V  P  R  R  P  S  F  P  P  L  S  L  Y  Y  S  P  S  S  S  S  S  S  T  R :   T  *  C  G  W  S  K  G  *  F  S  I  T  C  K  S  R  A  V  V  L  S  P  S  C  T  S  G  F  T  L  S  P  S  S  A  S  S  F  L  W  :  V  F  S  S  L  Y  C  H  R  H  E  L  Q  S   : *  S  K  L  Q  W  W  G  L  R  E  W  S  F  F  S  S  V  S  R  S  G  N  D  A  S  V  P  P  I  L  S  V  S  S  S  V  T  D  N  G  P  S  S  P  Y  L  F  S  N  T  C  C  P  Y  S  N  P  Y  V  K  A  H  I  N  S  S  Y  C  S :   L  F  G  C  G  I  G  T  I  I  M  M  K  R  M  M  R  K  S  N  Y  *  N  G  G  L  Q  V  V  I  G  S  N  N  K  R  G  *  E  A  A  Q  S  N  A  I  I  R  D  I  L  Q  *  L  F  *  L  I  I  *  F  P  I  L </second_frame>
            <third_frame>   S  Q  V  Y  I  V  L  N  K  L  F  F  S  S  P  L  F  S  V  F  *  S  L  I  K  L  H  S  L  V  L  S  L  *  M  T  M  S  N  M  G  D  T  T  L  T  K  V  F  V  G  G  L  A  W  E  T  P  K  E  A  M  K  E  H  F  D  K  Y  G  D  I  L  E  A  V  I  I  S  D  K  I  T  G  R  S  K  G  Y  G  F  :  V  T  F  K  D  A  E  S  A  K  K  A  C  E  D  A  T  P  I  I  N  G  R  R  A  N  C  N  L  A  S  L  G  A  R  R  S  R  P  S  P  S  I  T  P  P  P  P  P  P  P  Q  Q   : G  P  N  V  V  G  A  R  A  N  S  A  S  P  A  S  H  V  Q  W  Y  Y  P  Q  A  A  P  P  A  S  P  F  H  H  H  Q  P  L  P  F  Y  G :   Y  S  P  A  Y  I  A  T  D  M  N  Y  N  H  :  K  V  S  Y  N  G  G  G  Y  V  N  G  H  F  S  Q  V  Y  P  G  Q  A  M  M  P  V  Y  H  P  Y  Y  Q  F  H  H  Q  S  Q  T  M  G  L  P  A  H  I  Y  S  P  T  P  A  A  P  I  P  T  L  M  S  K  P  T  S  I  P  P  T  A   : V  C  L  A  V  E  *  V  Q  L  L  *  *  K  G  *  *  E  R  A  I  I  R  M  E  D  Y  R  W  *  L  D  Q  I  T  K  E  G  E  R  L  L  R  A  M  L  L  L  E  I  F  C  S  S  S  S  N  *  L  Y  N  F  Q  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0311A10.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121591" stop="121421"/>
                    <exon start="121324" stop="121165"/>
                    <exon start="120830" stop="120707"/>
                    <exon start="120284" stop="120242"/>
                    <exon start="120164" stop="119957"/>
                    <exon start="119132" stop="119113"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTMSNMGDTTLTKVFVGGLAWETPKEAMKEHFDKYGDILEAVIISDKITGRSKGYGFVTFKDAESAKKACEDATPIINGRRANCNLASLGARRSRPSPSITPPPPPPPQQGPNVVGARANSASPASHVQWYYPQAAPPASPFHHHQPLPFYGYSPAYIATDMNYNHKVSYNGGGYVNGHFSQVYPGQAMMPVYHPYYQFHHQSQTMGLPAHIYSPTPAAPIPTLMSKPTSIPPTAVCLAVE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 130 chains have been computed
$ 
$ memory statistics:
$ 38912 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2161 bytes was the average size of a spliced alignment
$ 11600 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 1933 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 160 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 23:29:57
-->
