<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 08:41:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326880" ref_strand="+" ref_description="SGN-U326880        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 2e-05, score=37.7)">
      <seq>acaagtaattttggaagttgattttgattgtttgtaaatgagttccttctttgttgttgttttgttgctgtatgaatataaggaggagtgctttcagctaatgaattttttaattttattttttgctgtaaaaaaaaaaagagtaactttggaaaatggatgtttacttaaggtgagaagagttttaagcttatgaactgattttgcttgttgaaaaatgaaagagaagaaataaatttggaaattgaattttagttaaggagaagattttcagcttatgaaacggatttttagtgaaggagaggaatttatttgtcaaatacattgatagccttaaaaagagcagaactttcgtatctctaacggtggaaataatcttaccttaatccaaactatgatgatttcaatttaaagaaacaaattctgtgttctatttttgatttactcattttaaggaagcatcctctctagttgtttacagctaaaattctgtaactgatgctatagcttaaagatgtagctttggatgaagtttgcattagcgatgatcatatagtgccacatcctagttgtgaacatgccaatgaagtttctctcccagactgatagccgtaagaaaccccggtgtgaaataattggtttattaagaaccataggagcaatcttctcttaaatataataatcagcaaaagggcaaagaagttcctcctttatatagtacaatgatggagaaggactcgagggctggtaggcttgattgcgtgttcccttctaaacatgataaggactctgttgaagaagtttcaagtttatcatctgaaaatactaggacatcaaatgattgctccagaagtaacaatatagactccattagcggtgaggtccagcccaataaccccattctggatgacaagaattctgcagttagggacaacttgcatagctatcctcttggtcccgtttctcaggcagatgatgatcttggttttcttgatagtaatcatgaggataaaaagtagtaccgagctcttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcngaaagttgtgattcaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="+" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="4993" stop="6692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5293" g_stop="6376" g_length="1084"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1086" r_length="1086" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6377" i_stop="6476" i_length="100">
            <donor d_prob="0.991" d_score="0.94"/>
            <acceptor a_prob="0.894" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6477" g_stop="6491" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="1087" r_stop="1101" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="+" ref_id="SGN-U326880" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>1099</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U326880" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5293" e_stop="6376"/>
          <exon e_start="6477" e_stop="6491"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGAT-AAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG-GTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAAC</genome_strand>
        <mrna_strand>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGCTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCNGA....................................................................................................AAGTTGTGATTCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319645" ref_strand="+" ref_description="SGN-U319645        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 2e-39, score=160) genbank/nr: gi|15237638|ref|NP_201222.1| expressed protein [Arabidopsis thaliana](evalue: 2e-37, score=160)">
      <seq>ttatattataactggcctgagatggaaaactttgaggatgttgacaggatgttcggaagttgtgattcaacatttggagttggagctagtatcgaagatgaccttggttggttttcgtcatctggtgttattgaaggatctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtattcagcagcacaagcaagttgatggatctgattttgggtattttcaggatggcttttcttacttatcttcagattacagtcattcagatcagactacggtttgtccaaccctatccacaattaaatctaaaaaaagctgtctcgtgactctttctgctaaggactcctgtgcgacaaatcagatgcagttgatggaaagcttacctgatccttcttttcaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacaggatatttggacacggagacagacactaactctatagatcgatctattgctcacttactcttccacaggccttcaaactcatcagtgatggctgattctttggctttggagtcaccttccacgattttcgagacattactcagcccaccaatgattgatgagaacttgatttctgctggagaaaatgcagccgaaccagataaaggcacgaaatattaaacaggcttctatacaaatgggttgtgtttatttcaatttatgtcgcatggactcgcctacatgtatgtgcatgtaagtatctgctatggatacttatatactcttttgttgtttagtgtaattcgaagaatctaaacagtatgagaatgaggatctatgtcaaatagcttacagttactcgtgtgtttgtgtatgagaattatcaagaatctcaaatgagaaattatttcatgtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="+" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="6021" stop="11724"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6321" g_stop="6376" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6377" i_stop="6476" i_length="100">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.894" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="6477" g_stop="6813" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="393" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="6814" i_stop="8874" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8875" g_stop="9480" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="999" r_length="606" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9481" i_stop="10442" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10443" g_stop="10591" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="1000" r_stop="1148" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10592" i_stop="10869" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10870" g_stop="10999" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1149" r_stop="1278" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="11000" i_stop="11083" i_length="84">
            <donor d_prob="0.930" d_score="1.00"/>
            <acceptor a_prob="0.814" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="11084" g_stop="11414" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1279" r_stop="1609" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1610" polyA_stop="1628"/>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="+" ref_id="SGN-U319645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1609</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6321" e_stop="6376"/>
          <exon e_start="6477" e_stop="6813"/>
          <exon e_start="8875" e_stop="9480"/>
          <exon e_start="10443" e_stop="10591"/>
          <exon e_start="10870" e_stop="10999"/>
          <exon e_start="11084" e_stop="11414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGGGTAATTGTTGTCTCTAGTGTTTTTCATGTGATTTTCTTTTTTTATTCAGAGGAGACTGACTAATACTTTATGATTGCTCACTGTTTATAATATCTTCCAGAAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACGGTAGGTGTTTCTGCATATGCTTCCAAAAATTTCATGTTCAACACCCTGTATCTCAAACACACCCTGCAACTTGTCAATGAACAGATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</genome_strand>
        <mrna_strand>TTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG....................................................................................................AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG....................................................................................ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U319644" ref_strand="+" ref_description="SGN-U319644        Tomato 200607 #1 [7 ESTs aligned] arabidopsis/peptide: | Symbol: None | dentin sialophosphoprotein-related, contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Homo sapiens) | chr5:25689692-25693972 REVERSE | Aliases: MHJ24.1, MHJ24_1(evalue: 1e-13, score=73.6) genbank/nr: gi|15237638|ref|NP_201222.1| expressed protein [Arabidopsis thaliana](evalue: 9e-12, score=73.6)">
      <seq>ctggaggtggattgaggtcagatttggagtttgccttctcaacatccagtgcacttgaaaatatctctggaatgcaggaagcttccaggtcaaaggaaacaggcaattcaattaatgattctggcactaaagatcaactcttcagtcagactggcagttcaatgccatcagaggatgaatcagccgttctgagtcatctatcttttacaaatggttcaagtgattcagatttcaagatagtgcccataaagaagattaatcttcacaaaattaactctaagctccagaatcaatctgagggaaaaagaaaacatgtttacgtggaaaatggggagacattcaactatattgatagccttccagaagagagaaaccatcctactgcaatcactggatctcaggctctcacatccacaggtggctggtataggaacaaatgaaaatatggtggacaagctacttcaacgttctgtaattaagcatgaaaacaacagggatcttgaaagtgtcagcacgggaattccagcagaagtaggttcctctattgtaaaggagagctcttgcacaagttctgggttgaatgaaatttctgaggaggcagatagttttcatcagcttgaacatgtcatggaacggttggatgtaagaacaaagctacggataagggatagcttgtatcggttggctcagagtgctgaacaaaggcttagacatgctaatctcaataatggatctggtgatgatagtcacacaagcagagcatttgatgatgatggagcatacagatgcacagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="+" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="6260" stop="10893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="6560" g_stop="6813" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="254" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="6814" i_stop="8874" i_length="2061">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8875" g_stop="9037" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="417" r_length="163" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9038" i_stop="9261" i_length="224">
            <donor d_prob="0.374" d_score="1.00"/>
            <acceptor a_prob="0.747" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9262" g_stop="9480" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="636" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9481" i_stop="10442" i_length="962">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="10443" g_stop="10591" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="785" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="10592" i_stop="10869" i_length="278">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="10870" g_stop="10879" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="795" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="+" ref_id="SGN-U319644" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U319644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="6560" e_stop="6813"/>
          <exon e_start="8875" e_stop="9037"/>
          <exon e_start="9262" e_stop="9480"/>
          <exon e_start="10443" e_stop="10591"/>
          <exon e_start="10870" e_stop="10879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAGGTAAATTATTAATTTAGTGTACATCGGGCTTTCTGTTTAGCCTTTTATTCCACCTCAGCTTAACCTTTAAGGTGTTCTATTTGAAGATTGTTGAATTCAATGGAGGGATCAGGTTGAGATTTTGTCTAACATGCACACATGAACTAGTGATAGAGTGTTATTGGCGTTCAGCATGTTCATCTAATTTAAAATCTTAAGCTGATAGAGAGAACACACTTTTATTTACTTAATTATGTTTCCAACATGTCCTTTACATTTGGACTTGATTCTTTTTCATGGGCCAAGCATATGTAGATTCTTTTTTGTTAATGGGTAGCAATGAATTCCAAACCCAGTACATGTGGCTGCGGTAATACCGTGTTGACTCTGTCATCATCTCATCTAAAAACTCATGTTATATCTTTCATAAGCACTCTTTCTTTTCCAAAATCTTGTCTTAAGCAAGGAAATACATGCATTGATGAGGTGCACTGTCGCCGGCACCAATGGTTTTGACTCTATTTTTATGCGTGAAACTTCTCAAGAAACATATATGAACAAAGTGGCTCCCCTCATGTAAAGGGACAACTGGGTGCACTGTTTCATCTAAGATATTCTGGTAATGAACACAGTTGAAGCAATTTTTTTCATTTGTTCCTCACCTCAGTCTGATCTCTGTTTCTTTAGTTTCTTTGTTGTTTCTGATTCTTCACTTGTTTTTACTCTTTAAAAACAAATCTTCACAGCAAAATTAGGAAAGGATGACTAGGTGAGCAATTTGTAGCACTTTTTTTTTTTTGAAATGTTCACAATTTTATATATCAGTGCATAAAAATTGAGCCAACAACCATAATTTGAGACATGACAACCTGATCAAATACTATCCTATACACTTATATATATTCTAAACACACTAAGATAGATTCAGTAGCCAGTGTGAGTTCTTTTTTACACAAACAAAAAAATAAGAAAAGTGAATTCATCTTGATCTACTGAGTCGGACTATCCTTGCTTGAAAGAAATCTCTGATTCCTTTCCCTACAGACAGACCACCATATCTGAAATGGTATCCTTTTTCATCTCCTTTATGCCTGGGTATAAGATGACTCCTCTATTCCGGCATGTCACTCTTTCCCCTACTCCCCCTGGCCTCCGCGTCAATTTTTCTTCTAGAAATGAATCTTTAGAAGCAAAATCATGAGTTGGTGAAACAGGGAAAGGTGCTATTTGCAACATTGTATACACAAATTTGCCTTCCTTTTTTTCCATGTATAAATGTTACTCTTCTTTGTTTCATTTTATGTGATGCAGTTTAATTGGGCACAAAATTTGAAAGGGAGAGTAAGACTTTTGAAATTTGTGGTCTAAAACAAGTCTTAGATATCTGTGTGACTGCGGTAAGATGAGAATTTTAAAGTTAAATACAGAACGACATTATTGCTTTTGGGACAACTAAAAACTAAAATGCATCACATAAGTTGGGACAGGTGGAGTAGTTTGGAAAATTGTAATTTGTAATCCATCTTTGAAGAACGCACTTTTTTCTTGTCTTGTTGGTTGGATTATGGTTCCTGCATTGAAAATGTAAATTTGTTTCTATTATTGATTAATGAGGTGTGGTTCGAACTGACAACATTTATTTTGCTTGTATTATTGATACTGATGTGTACTCATGAATTGGTTGTGAGTATAGGATATCTCTTAATTAATACAATTTGAACCTTAAAGATATAAAAAGCGAATTCATCGTCCAACTGGTTTATTATCTTCAAATTTGAAAACAATATAAATTGAATAGAATTAACCCAAAATATCTAAACATGAATCTAATTAAGCCAAAAGCAATAGAACAAAACAAATATATGTCCCTCTTTGGACTTTCTAGGCGTTACCACCATTTTACGTTAAAAGGCAATGGTGCACCCGTCACCTTAAAACCCTGGTATGATTCTGGTGTTGAGTAAGGTAAATGTGTTCTAGAGTTCCTAACTCTCTGGATGTGCACATTCTACTTGATGCATTCATCCTGATATTAGTGTTCACAATGATCTGCTTCTTTCTAATCTGTTTATGGGGTTGCAGATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGGGTATAAAATCTCAATGAAAACTAATATGCATTTTTGATATTGTTTGGTGATGAGTTTCATCAAGGTTTGTTTTAAGTGAGTGATTTGACTAAACAAATTTGGCACACCTTATTTGTGTAGGTCAATAGCTCAAACGACATGTGCAATGCTTTTAGATGGTTCTCAGCTGGATTAAGATAGTTTTTTAGTCGAGGGACAATATTAATGACAAACATATTATACAAATTCCTATATTCTGGGAAGGTTAATGATGTGCAGCTACACACTCTTGTAGCTTCACGCAGTCATAGAGAACTATTCTATTTTGTCAGGAAGTTGTCACACAGCATGCTGTAGCATTGTGCATACATCTGACTTTTTCTAACCATTCTAAATTAGAGATCTTTGTTATTTAATTGAGACATGTGAAGATGCTGAGTAAATAGGAACTCATTTGGTCCTCTTATTCATTATTTATATTTATACAGATCACATATTAAATTATTTTTTGTGTTAGAATAATTCATATTAGTGATGGCGTTTTACTAAGACTTATTTAGAAAAATCTTTGTTCATGTATATCTATAGTAACCTATATCATACTATTGCCTATAGCTACAGAATATAGATATAGAAAAGAGTATTTGTCTCTTAGTGCATGTTTGTGTTGCAGATAGCAATGCAGAGAGCTGATTGCTTATTTAGTACAACAGACAGCCTTAATATAAAAGCTGTTCCTCATCATCTTGCTGCTTGCTTATTTTAAATTATTAATCAGCGGATGTGCAAAAGCCTTCCAAAGTCTGACTTATCGTTGAGTGTCTTGAAACTATCTTTGTGTTAATCCTGTAAACTTGGGCTAGGAAGGGGCAGTTAGCAGATTTGGTATGTGGTTCTTCAAGTTTATACATTTAGTTGGAAATCAACTTTCTTTTCAGTACATGCATGTTTGTTAGCTCACTCTGTTGAGCCTTCTGGTTTAGTTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAGGTTGGTATCGTTTCTTGATGCCTTGGTCTACATGCATACTTCCCATATAGGCCGTATCATAGTTTGCATACTTCAAGCACACGGTATGTTTGGTTTAGTTAGTGAAGATCTTATGAAGCACATTTCTCACCCTTCGAGTTTGGAAAGTAAGTAGGTCTAGTCAGTCACACCTTGAATAAGCACTTTTCTTTTCTTGATACCAGTAATCATACTGGTAATGTGATAGATTCTGTTGGCTTCCTTTCTGTGGTCTTAACATCTATTGGCTTGTTTTTCAGATGCACAGGA</genome_strand>
        <mrna_strand>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG................................................................................................................................................................................................................................GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG......................................................................................................................................................................................................................................................................................ATGCACAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312458" ref_strand="+" ref_description="SGN-U312458        Tomato 200607 #1 [3 ESTs aligned]">
      <seq>tcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttatacagtccgcttctgtataaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="22642" stop="21825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22342" g_stop="22126" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="218" polyA_stop="239"/>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U312458" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22342" e_stop="22126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTAT</genome_strand>
        <mrna_strand>TCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U312461" ref_strand="+" ref_description="SGN-U312461        Tomato 200607 #1 [303 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde 3-phosphate dehydrogenase A, chloroplast (GAPA) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit A, identical to SP:P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana} | chr3:9796330-9798282 FORWARD | Aliases: MLJ15.3(evalue: 3e-173, score=605) genbank/nr: gi|120661|sp|P09043|G3PA_TOBAC Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) gi|170237|gb|AAA34075.1| glyceraldehyde-3-phosphate dehydrogenase A-subunit precursor(evalue: 0, score=644)">
      <seq>gttttatggaaatcaggaaatgagtacaaaaccagcaattctggctcatttgtcatgttatattgtgtcactgaatctatctatcatccataatctcatccattttcttccctccattcattcattcataaacttccacaatttttcttcatcaacacataaactgtactgctgttgctgtaattctcttaaagaacaatggctgctctctcagtagccaacacttctcttaaggttaacaacaaaggattctctgaattctctggtttgagaacctcatcagctgttccatttgggaggaaaactaatgatgatttgttctctgttgctggcttacaaacctctgctattggaggaaggaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttctcaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccaaccgtgaccctgtgaacctcccatggggagaacttggagttgacttagtcatagaaggtaccggagtttttgtagacagagaaggtgccggtaaacacatccaggccggagccaagaaggtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattatcaagggaacaatgacaactactcactcttacaccggtgaccaaaggcttcttgatgcaagccacagggatcttagacgtgcacgagctgcagcactgaacatagttccaacctcaactggtgctgctaaggctgtggctcttgttctcccaagcctcaaggggaaactcaacggcattgccctccgtgttcccacccctaacgtctcggttgtggaccttgttgtgcaagtcaccaagaagacatttgctgaggaagtgaatgctgcattcagagaggccgctgataaggaactcaatggcattctatctgtctgtgatgaaccactcgtgtcagttgacttccggtgcagtgacgtgtcatcaactgttgattcttcactcaccatggtcatgggagatgacatggttaaggttattgcttggtatgacaatgaatggggttactcacagagggttgttgatcttgctgacattgttgcaaaccagtggaaatgaaacatgaaaataaaataaagcagtactactaaatagtggcttaatttatatttttttaaccttgcttgtagattcttattcctttttgaaaattgtaatgagaactataacaattttccaccttgtgaaatctcaattcaataaaagtcccctttcttgtctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaantccggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="25628" stop="21840"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25318" g_stop="25159" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="234" r_length="160" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25158" i_stop="25043" i_length="116">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25042" g_stop="24929" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="348" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24928" i_stop="24031" i_length="898">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="24030" g_stop="23729" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="349" r_stop="650" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="23728" i_stop="23146" i_length="583">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23145" g_stop="22901" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="651" r_stop="895" r_length="245" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22900" i_stop="22812" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22811" g_stop="22145" g_length="667"/>
          <reference_exon_boundary r_type="cDNA" r_start="896" r_stop="1562" r_length="667" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1584" polyA_stop="1622"/>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U312461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1488</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U312461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25318" e_stop="25159"/>
          <exon e_start="25042" e_stop="24929"/>
          <exon e_start="24030" e_stop="23729"/>
          <exon e_start="23145" e_stop="22901"/>
          <exon e_start="22811" e_stop="22145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTACCTCATTCACTCGTCCTGCATTCCATCTTATTATTAATTGATCCTGACTTGTTCGGGACTGAGACGTACGTAGTTATGAATATGTTTGTTGTTTTCTTAAAACTGATGGACAGGTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCTGTGAGTATTATTATACAACTACTACTATTATTGCATCATAAGATAGTTTAAGTTCTGTGCACCGACGATGTAAAACATTTATACGCTATCAGGTCATAGCCTTTAATTAGTATTGATAGTGTAAAAAATCTAACATTGTCGGTGTATACAACTTGAATCCTTACAAAGTTTAAGGAAAAAAGAATATGTATCCTTCATGTCTTGTTGTGATCAAGATGTGCTCTAAATTTTTTTTCGGGGGAAAAAAGACAGATATACCCCCGAATAATCGTAAATGGTATGCAGATACACTCCGTCATACTTTTGAGACATTAGTGCCCCTACTATCCAAAAACTAGAGCATATATGACCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCGCAATCTTATATGTTGATAAATGTCGGATCGATGGATAAGATTGTGACATGTGTATGTCTGTTAATATAAAGGGTATATATGCTCTAGTTTTTGAACAGTAGGGGCAACAATGTTCCAAAAGTATGACGGAGGGTACTTGCATACCACTTACGATAGTTCAAGGGTATATTTGTCCTTTTTCCTTTTCTTTCCCTTGTATGTTCTACCTTTTCTATGTTGAAAGCAGCCTCCATACAAAGATCTTTATGCAAATTCATCAATTTGATAAGTTTTAAGGAAGATCAAACACTATAAAATGAATGATAACATTGTATAAACATCTAAATTGTATTTCCTTCCTATGTTATGTTGCTCGGACTGTCCAAAATTGTTGTTGCACCCATGTCGGGTTCTCCCAAAATGTACTACTTTTGGAGTATCCGACATGCACTTGTCAGCATTTTTTGACGAGTCTGAGTAACATAGCTTCCAACGATGTTTCTTGTGGTAATTGGATTTAATGAAATGTAGATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTT</genome_strand>
        <mrna_strand>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG....................................................................................................................GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U333580" ref_strand="+" ref_description="SGN-U333580        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | glyceraldehyde 3-phosphate dehydrogenase, chloroplast, putative / NADP-dependent glyceraldehydephosphate dehydrogenase, putative, similar to SP:P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana}; contains Pfam profiles PF02800: Glyceraldehyde 3-phosphate dehydrogenase C-terminal domain, PF00044: Glyceraldehyde 3-phosphate dehydrogenase NAD binding domain | chr1:4392448-4394350 REVERSE | Aliases: F13K23.15, F13K23_15(evalue: 7e-88, score=236) genbank/nr: gi|120661|sp|P09043|G3PA_TOBAC Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) gi|170237|gb|AAA34075.1| glyceraldehyde-3-phosphate dehydrogenase A-subunit precursor(evalue: 3e-91, score=251)">
      <seq>gaagaacaagaggatagtaactgaggcaaagttgaaagtggctatcaatggatttggaagaattggaaggaacttcttgaggtgctggcatggtagaaaagactcacctcttgatgtcattgccatcaatgacactggtggtgtcaagcaagcctctcaccttgtttgccctttnccaaanaaanaaatatgactccacccttggcatctttgatgctgacgtcaagccggttggcactgatggcatctctgtcgatggaaaagtcatccaagtcgtctccagccgtgaccctgtgaacctcccatggggagaacttggagttcacttagtcatagaaggtaccggagtttttgtagacagagaaagtgccggtaaacacatccaggccggagccaagaaagtgctcatcaccgcccccggaaaaggtgacatccctacttatgttgttggtgtcaatgctgaactttacagccatgatgaacctatcatcagcaatgcctcttgtaccaccaactgccttgctcctttcgtcaaggttcttgaccagaaatttggaattat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="24319" stop="22596"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24019" g_stop="23729" g_length="291"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="310" r_length="310" r_score="0.866"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23728" i_stop="23146" i_length="583">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23145" g_stop="22901" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="555" r_length="245" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="22900" i_stop="22812" i_length="89">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.982" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22811" g_stop="22805" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="562" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U333580" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U333580" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24019" e_stop="23729"/>
          <exon e_start="23145" e_stop="22901"/>
          <exon e_start="22811" e_stop="22805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACC----TT---C--T--C----AAA----TATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGGTATGTTCTTTCATACTAACATATAACAAAACAGATTTAAGTTGTATATGTTTACACGTAGTGTAACTAATTTACATTATACGTTTGCAGATTCAGGAAACTCATATTATTAGTTGTCTAAACAGAAACAGTCGTTCTAAGTTTTAATAGCCATGAATTATAGACTTAAGGGTAACAACCAAACCTAAACTATCACATTTTTGCGAGTTTCATACGTCAGCTATCCATTGTTCTACTTAGTACTTACATACCTAAACTGACACATTTTTGCGAGCTTCATACCTCAACTATTACTTGCTTCATATTAAAAAATACCTTGATGTTGAGTTGGCCTACATGCCTGTTGTTGATTGAGAACAAATATATGGCCAACTTGAGAGATAGTTTAGGTACAAAAAGAGAACAATGGATAGTTGAGATATGAAACTCGCGAGGAAGTGATAGTTTAAGTGTTTAATTATCATTAACTCTGAATTAAAACATGATTAATTTAGCTCATGTAGTGTCTAACATATAGTACTAGCTTGAGATACCTAGTAAACATCTAAACTATTGTTCAAAATGTGTTCTGTAATTTGTTCAGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTGGTAATACATCTTGATCTAGTCATACACGAGCATATACTGTTAGTATATATAACTTAAACTCATCAATAAATTATCTTTCCTTATCATAGGAATTAT</genome_strand>
        <mrna_strand>GAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTGTTTGCCCTTTNCCAAANAAANAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAGCCGTGACCCTGTGAACCTCCCATGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACTTGGAGTTCACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAAGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAAGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG.........................................................................................GAATTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U326065" ref_strand="+" ref_description="SGN-U326065        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to SP:Q9FNS4 PsbB mRNA maturation factor Mbb1, chloroplast precursor {Chlamydomonas reinhardtii}; contains Pfam profile: PF00515: TPR Domain | chr3:5809272-5812683 REVERSE | Aliases: K14A17.11(evalue: 8e-126, score=447) genbank/nr: gi|15228944|ref|NP_188329.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|20260426|gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gi|30725484|gb|AAP37764.1| At3g17040 [Arabidopsis thaliana](evalue: 7e-124, score=447)">
      <seq>ttgtgctagttggctggcatgggctcaactagaggctcagttagagaatgaccgttccgctaggcagctgtttgagaaagcagttcaagccagtccgaaaaataggttcgcgtggcatgtatggggagtttttgaagctaatctaggaaatattgatcaaggaaggaaacttctaacaatagggcacatggtgaatcctagagatcctgttcttctccaatcacttggtttgatagaatacaagaactccagtgcaaaccttgcacgagttctattccgaagagcgtctcaactagatccaaggcatcaaccagtttggattgcttggggttggatggagtggaaagaaggaaacatttccacagctcgagaactataccagaaggctctatcgatcaactcaacaactgaaagtgctgcgcgttgtcttcaggcttggggtgttttggagcaaagagctggaaatctatcagctgctcgaagactatttagatcgtctctgaacataaactctcagagctatataacatggatgacatgggcaaatttagaggaagatcaaggtaactctatccgtgcagaggaaattcgtaacctctactttcaacagcgtactgaagttgttgatgatgagtcgtggattatgggcttcttagacgtcattgacccagcgattgacagcataaagaggctcttgaatctagatcagaactcttactacaaggtaaaagagtctgcttctaatactactgctggagacgacgttgaggggagcacagaagaatcagcttctccctcctcggctaacgtcaatgacaataacatagatacaggaagtggctttgatttagatgattttatcagtgtaatgctgtctttagacccttcaaagctggaagttcagcttacaacatctcttaaggaccctccgaaaatcgccagaactactaatggggtgtggcgaccatcgacaaagactagtagaacatcaacaacactttgattttacaacaacaacgacatacttaatgtaacctcactagtgtggtctgggagggcggagaacgaaaggtgatgtgttgcagccttacctttacctcgtgaaggtagagagactgtttctgactcagctcaatataaagtttattgttctttagtgggaattgcaacattcattaatgttgtcaaatgaagaagtcttggtccacattttgtaaattacttaggaatattgagaagaattgtataaatttgattgtaagaagaaggcaaatctacacatataatcccccccacattgtataaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="30637" stop="27774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30442" g_stop="30427" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="16" r_length="16" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30426" i_stop="30323" i_length="104">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30322" g_stop="30263" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="76" r_length="60" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30262" i_stop="29824" i_length="439">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.880" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29823" g_stop="29578" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="322" r_length="246" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29577" i_stop="29345" i_length="233">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29344" g_stop="29234" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="433" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29233" i_stop="29036" i_length="198">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29035" g_stop="28859" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="610" r_length="177" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="28858" i_stop="28751" i_length="108">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.850" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="28750" g_stop="28058" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="1304" r_length="694" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U326065" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1303</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U326065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30442" e_stop="30427"/>
          <exon e_start="30322" e_stop="30263"/>
          <exon e_start="29823" e_stop="29578"/>
          <exon e_start="29344" e_stop="29234"/>
          <exon e_start="29035" e_stop="28859"/>
          <exon e_start="28750" e_stop="28058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTGCTAGTTGGCTGGTAAGAGTCATTCAAAAACTTTAATCTGTCTCAGCTCTTTTCGAGTGGTTTATGCACATGTCATTTCTGGATTCCTTATAGTGGTTCTGTATTATCTTTTGTAGGCATGGGCTCAACTAGAGGCTCAGTTAGAGAATAACCGTTCCGCTAGGCAGCTGTTTGAGGTTTGTATTTTCTGAAGTTGATCCTTTCCTATCATCATTGAACATTTCCTTTTGGCATATTACATGAGCAATCACTCAAAGTTGGAGTGCTTAACTCAAATTTGGCTCGGCTAGGAAGTAAACACTCTACCTTAGAAGAGTGCACATCTGGTCTCAACTGACAACTAAACACTCCAACTCGTCCAATATTCATTTGGCACATAAATTTTGGAGGTGTCTAGATGATCATTTTGTAAGTTCGACTATTCAACTGACACAATGAAGACTAGTTGAGGTGTCTAGATGTGCACTTCCCGATTTTGAGTGTTTACCTGCTAGTTGAGGCCAAGTTTTGAGTGTTTGTTCATGTATTATGAGTTTCCTTTTAATTTGATGCCTCTGTCACTTTATTTTCAATTTTGTTTATAATTCTTGTACTTGATACTCCTAAACAAAGCAGAAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATTGTAAGACCTTTCGTTTCAATAGTAAATGCTATAGAATATCGAATAAACTCATTTACTAAAAGACTCACTCGAATCGTTCAAGCTCTTGACATGGTTAATAGATGATGAAAGACTAAAAGAACTGAATACATTTGATGAACCTCATCACTGCCTTTTCCATATGTTCTCAACAGTCTTAAGATAATAAAACTTGTAACTTTAACAACTGAATACCTAACTTGGTACTGATTTAGGCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAGGTAATGCTCATTTCTAATAGATAGAGTAAGTTTCTAGTTTGCTTTTCGTAAGACATTTTGATGCAAATTGTGGAGGTTAGTCCAAACTCGTAACTCTGGCTTGCAGCTTAGTCTGTCCTTTGTTCCAACAAGTAGTATATTCTGGTTATATGTAATCTTCTCCACATAGGAAATGTACTAAAGAGTTGTTTACTATAGGCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAGGTATATGAGTCATTTCCTTCTATGACCACATTTCAAGCATTGTTATACATCAGTGTTCCATATAGCTGCTCTTCTCCCTAACATCACTAGACGTTTTTGTTGACACAGCGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATGAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTGAAAGAGATACAAATCTACACATATTAT-GAGTAAACATTGTATA</genome_strand>
        <mrna_strand>TTGTGCTAGTTGGCTG........................................................................................................GCATGGGCTCAACTAGAGGCTCAGTTAGAGAATGACCGTTCCGCTAGGCAGCTGTTTGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATT.........................................................................................................................................................................................................................................GCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAG......................................................................................................................................................................................................GCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAG............................................................................................................CGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGAACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATAAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTAAGAAGAAGGCAAATCTACACATATAATCCCCCCCACATTGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343303" ref_strand="+" ref_description="SGN-U343303        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | tetratricopeptide repeat (TPR)-containing protein, low similarity to SP:Q9FNS4 PsbB mRNA maturation factor Mbb1, chloroplast precursor {Chlamydomonas reinhardtii}; contains Pfam profile: PF00515: TPR Domain | chr3:5809272-5812683 REVERSE | Aliases: K14A17.11(evalue: 8e-13, score=71.6) genbank/nr: gi|15228944|ref|NP_188329.1| tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] gi|20260426|gb|AAM13111.1| unknown protein [Arabidopsis thaliana] gi|30725484|gb|AAP37764.1| At3g17040 [Arabidopsis thaliana](evalue: 6e-11, score=71.6)">
      <seq>actcttttggatctctggttttattttgttttaccttcaataagtaacaggatacagaggggataatcttttctatgaggaagtgcaagtcttgattttttttccatataagccttgcttcttagaatctgttgaactatcgaaaagtttgagctattcgacaccaaatttctcttagtctttgaagtttatcggcttattctttcatctccagatagaaaccgatattcaatcaccattgtattccattaagtatatgacagtgttaccaaagtgtagatacaagtaaagcaatgagtcagttttcgtttacttcttcttcgagctctaatttcactctcttctatcattctcagaatcataatccttcaaagtttcatgtttctgctccctttagaacatcccaaccatcgccttcacatcctattttacctcccttatgttcccgtgatccgtcttcctcatcaccacttcttgaagaaaagccagaaacatcacaatcttcttctaagtttgatcctcaagatacactaagttacaatgatgaagtttctgaggagatcagcactacaaagaagtccttggaagagttacttgttgttcgtaggccggtgaaggagtcttccgtggaaaatgatgatgaaaaaggggaagcagtgagtaactttgaggattctcaagagaaaaatgatattctggaagaacaaccatcttcctcatcatttccacttgatgctggccttaaaaaatttgcaaaaaaagtgccaatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="33930" stop="31398"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33636" g_stop="33596" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33595" i_stop="32430" i_length="1166">
            <donor d_prob="0.808" d_score="0.88"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32429" g_stop="31698" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="774" r_length="732" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U343303" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>773</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U343303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33636" e_stop="33596"/>
          <exon e_start="32429" e_stop="31698"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCAGT-GGATCTCTGGTTTTATTTTGTTTTACCTTCAATAGTAAGTCTCACATTTTACTTACACTTTCTCTTTTCAAATGTTGATAGCCGCAGAGGGCGGAGATAGAAGCTCAGATACTCTAGTGTTTGCTCAAATTATGTATTTTATGTTTACGAGATTTATTTAATATGTAAAAAAGTATCAAATTTAGAATCATGTTATAATGCTAAAAGTCATTGTTCTATAATTCAAAACTGATAAAATTGAAATTCTGGCTTCGCCTCTGCCGATATATATGTTCTTGTTGGTATAGATTTTGTTAAAGGTAGATAGAAAGTAGTTTGCAAGAACATACATTTTTGTTTGATATTTGAAGGTTATTCAAGTTAATTTAACTTGTATGAGATATTTAATGACATGTTCTTGGAAATTATTTGGAAGTAATTAATTTGGTTTGTGTGAGTTATCAAGCTGTGAACATTAATTTTGAAGTCTTAAAGGTGTGTGGATCATATTTCCTTTTCAAGCCCTTTTGCATAGTTTTGGTTTTATTTTGGGAAAATGCACAAGTAGCCCTTTAGACTATGGTCGAAATTCCAGAAACACATCTTAACTAAATTAAGGTCCTATTATCCCTGAACTTATTTGTTTTGTAATTTTATATCATTTTTGTCTTATGTGACACACTTCGTGACTCCACGCAATTGAGGCGTGTGAGAGATATTTGGATGCCACGGAAGCCAAAAAGGGGCACAAAATTACAAAAAAAAAAAAGTTCAGGGCTAATAGAACCTTAGTTTAGTTAAAGTGTGTTTTTGAGATTTCGGTCATAGGTGCTTGTGCATTTTTCCCTTTAGTTTAAGAAGGCATTATGTACTCTTTATTGAAAGCCGACCATTTCATCCAAAAGTTTAAGTCGTGGATCATGTTTCTTTTTTTTTTAGCCCTTTTGCATAATTTTCTTAGTTTGAGAAGGGAATACATACTCTGTGTTGAAGTACGACTATCTCATTCAAAAGCTTAAGCTGTTAGAGGTGAATAGAGATGTATTGATTGTATTATTTTATCGTCTTCCAATATGCACCTAATATGTGGCCTAGTTTCTTGCTACGGGTGAAAACACGTAGAAATTCTTTTTGATAATGGGTGTCAGTGAGACTCGAACCAAGAACCTCCGCCTGCCCCATGTTTAAGTGAGTGATCATTTTGTGTTGTTTATGTTTCAGAGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAGAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAGAAATTTGCAAAAAAAGTGCCAATTTTTG</genome_strand>
        <mrna_strand>ACTCTTTTGGATCTCTGGTTTTATTTTGTTTTACCTTCAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAAAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAAAAATTTGCAAAAAAAGTGCCAATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U322350" ref_strand="+" ref_description="SGN-U322350        Tomato 200607 #1 [8 ESTs aligned] arabidopsis/peptide: | Symbol: None | isoprenylcysteine carboxyl methyltransferase family protein / ICMT family protein, similar to SP:O60725 Protein-S isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) {Homo sapiens}; contains Pfam profile PF04140: Isoprenylcysteine carboxyl methyltransferase (ICMT) family | chr5:2682230-2683713 FORWARD | Aliases: None(evalue: 3e-78, score=289) genbank/nr: gi|18415785|ref|NP_568191.1| expressed protein [Arabidopsis thaliana] gi|14334710|gb|AAK59533.1| unknown protein [Arabidopsis thaliana] gi|16323428|gb|AAL15208.1| unknown protein [Arabidopsis thaliana](evalue: 2e-76, score=289)">
      <seq>cttaattaaaataattacctcgccttcatcagatctggttgttggaaatgtcattcttaaaggatagtttcattgattctgaagcccattttgtggtgctaattgtacagagctcatcaacattttcaggtttggagttgaaatttgaaacatagcgtatcatattttcaagcctttgatgactcagactgagacctcattttagtaactttaacgagaggttttgtttgacttattcgcgtgaaatggcagagctttttggatatacagcatgcagacaattattgcaaatgttcatttcaattatattcttccatgtttccgagtacattctggcacttgtctttcatgggaagtcgaatgtatcttttaagtcgcttttgataagcaaacattatgtactagcaatgttttgctccttgatagaataccttattgaaatctatttctttcccggcttaaaggaatattggtggataagtaattttggcctcgcaatggttgtcctcggagaaatcataaggaagttggcaattgtgacagcaggccaagccttcactcatctaataaaggtttatcatgaggaaaatcatcagttggttacgaatgggatctatagatttgtccggcatcccggttactgtggtttcttcatctggtctgttggtacacaaataatgctatgtaatccaatatcaaccattgcattcacagttgttgtgtggaaattcttctcgggaaggataccttacgaggagtttttcctcaagcagttctttggttctgactacgaagattatatgagaaaagttccttctggtattccacttgtgaggtgattatatcctcttcagtgctctatatattcatgcctaacgtcatctgctcatcggtgctgagataacactgtttatgaattttatcttcttagacactctttacagttttcataacatgaagttcgccagaaaaaggttcctcctagatataacttctgaggtgatgcttctattaacccttgtatagcgcgtttatcttatttgtatcatcatgttttcgtcgtatcatgtctttgttaagacttaggtaaactgttcttgtggggagctgtaagttataactgtatttgtatttatggcttgatgggacagtgtttttatcatactcttaaggagaagaaaggctttgtaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="+" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="38137" stop="40970"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38437" g_stop="38479" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38480" i_stop="39520" i_length="1041">
            <donor d_prob="0.778" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39521" g_stop="40664" g_length="1144"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="1187" r_length="1144" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1190" polyA_stop="1214"/>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="+" ref_id="SGN-U322350" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1187</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U322350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38437" e_stop="38479"/>
          <exon e_start="39521" e_stop="40664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTTGTATGTAAATCTCCTTAATCTGTTCTTCGTTTAATCTTGCCCTCTTGGTTGAATTCATTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATTGATAATGTTTGAAGAAGAACCGTGAGAGCTAAGGGATCACTATGATATCTAAGCTTACGTAGAGTAAGAGATTGTATAAACTGATATTGGAGACGAACTGAAAATGATCTTGTGTATAATGCACGTATAGAATCTAAGTTCTGTTATGTGATGTCTTTGTTCCTGAATGGTGCTTGCATAAATTTGCAGGGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</genome_strand>
        <mrna_strand>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U346004" ref_strand="+" ref_description="SGN-U346004        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>ttttattttgtgcatcttcggtatgttttcgtatttgaatgaactgaatttgttgttttctgtttttgtttctgttcttcttttgtggatttagggttgagccgcctttgcttgtgtgcatctcgattaatttatggggtagcttatcgtctagctcacaggtacaggttcagtttagtgttgctgctgatactcgaactggggatttttcagtttttttttcaactcactaggtcattcccttgggcggggtgaattttatagggcaatttatggtgttcgtgaacctatggtatatctatcaacttagatattttgggtagatactccgttgaattaatctaatattatctgttgacattgatgctacaaaaaaagaagcttaaatggtgcacttgatgctaaaaaaaagttcgttgttttaatggtgcagcgatgttataaaaattctatatcttcatctgccattgtggactcatgatagaactcaattttcgagtcatttactaaatgatactgatgatatctgtgctgtagatgttgatttctaggataacttttttattaagttgcttttatctcaattagttcgttaaagaatgtgatagttaaatagttaataacttgttatttttcatgatttagtgatgggagtgttaaatcacaagttatcaagtgtagtgaaaatgtgcctgaatccggttagtttggataggtggtatgttgattgattgatttttactttattagagagtcaatatctannagctctgtattgaccccaaatcccatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="+" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="38237" stop="39631"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38537" g_stop="39331" g_length="795"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="793" r_length="793" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="+" ref_id="SGN-U346004" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U346004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38537" e_stop="39331"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATT</genome_strand>
        <mrna_strand>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGGTATGTTGATTGATTGATTTTTACTTTATTAGAGAGT-CAATATCTANNAGCTCTGTATTGACCCC-AAATCCCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U321776" ref_strand="+" ref_description="SGN-U321776        Tomato 200607 #1 [9 ESTs aligned] arabidopsis/peptide: | Symbol: None | riboflavin biosynthesis protein-related, contains weak similarity to Riboflavin biosynthesis protein ribF. (Swiss-Prot:P08391) (Escherichia coli O157:H7) | chr5:7854132-7855816 FORWARD | Aliases: MKD15.19, MKD15_19(evalue: 2e-94, score=343) genbank/nr: gi|21553715|gb|AAM62808.1| unknown [Arabidopsis thaliana](evalue: 6e-93, score=344)">
      <seq>taggccgaatccatctcaattttcttttcttctgatgaaaattaagaatgttgagtgggtctcggtgtaattttcattgcagtgctcaccaatttgccaccattttagctgcttctacactgacctcagaatcttctttcaaaaattttagaatcagattgaggagcaggaacagtaatagttcttgtttgagcaataaagtttgtgattttggggtcaattgtgttcaacccaaatcttcagatacccaaagctctttgctttctgaaactttgagccaatctggaacagatgaggagcctccatcagaaagattgccaattcttacaggcgggatagtagctctggggaaatttgatgcactccatattggtcaccgcgagcttgcaattcaagcagcaaagagaggaattccatttcttctttcatttgttgggatggcggaagtacttggatgggaaccaagggctcccattgttgctgaatgtgatcgcaaaaggattctttcgtcttgggctccttattgcggtagtataatgccaagggaactccagatagatttttcgaaagttcgatatcttacgccttgtcagtttgtggagaagctttccaaagagctgggagtacgaggagttgttgctggcgagaattatcgttttggatatagagctgctggtgatgcatcagaccttgtgaagctctgtgaggagtatggattagaggcttatataatcaattctgtcatggacacaaatcaaatttctggagacttgaactctaaagacggtaaagagagagggcaagtatcatctactcgtgttaggtatgcccttcacaagggagacatgaaatatgtgtcagagctattaggtcggaaccatcgtcttattttaatgatggaagaccaagaaaggtttactagtgagagaaataggctgtctgctccaaagtcttgtttgttgaatcttgcacctaaggaaggtctttatgagaattgttcagttttgattgacaagagtgttattccctgcagagtaatagttgatacaacatatattcatttggaatcctatgaggtagctagtttttcctgtgttacttctcaagacttaaagatattgggtattgactttggcagtccaaagttagaaggggttcaaattttgtaattcattcccgataatttgttagtgcaaccatttctgaatgtccttcagtgtttaagtatgagtatgattttttaagcggtacctttctgctaaaaaaaaaaaaaaaaaactcgaggggggccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="+" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="44094" stop="49866"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44394" g_stop="44670" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="44671" i_stop="46528" i_length="1858">
            <donor d_prob="0.893" d_score="1.00"/>
            <acceptor a_prob="0.609" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="46529" g_stop="46581" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="330" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="46582" i_stop="47668" i_length="1087">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.790" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="47669" g_stop="47804" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="331" r_stop="466" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="47805" i_stop="48682" i_length="878">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.846" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="48683" g_stop="48858" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="642" r_length="176" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="48859" i_stop="48945" i_length="87">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="48946" g_stop="49565" g_length="620"/>
          <reference_exon_boundary r_type="cDNA" r_start="643" r_stop="1262" r_length="620" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1263" polyA_stop="1279"/>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="+" ref_id="SGN-U321776" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1262</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U321776" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44394" e_stop="44670"/>
          <exon e_start="46529" e_stop="46581"/>
          <exon e_start="47669" e_stop="47804"/>
          <exon e_start="48683" e_stop="48858"/>
          <exon e_start="48946" e_stop="49565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAGGTAATTTGTTGTAATTTTAATCGTAAATTTAGTGATTTTGGGTAATTTTGAGGTATTTATAGTAGATTCTTGTTTGAGCAGTGCAATTAGGGATTTGTTGAACCCAAATGTTCATATAACCAAAGCTCTTTATTTTCTGAAACTTTGAGGTAATTTATTGTAATCTGAGCAGTAAATTTAGTGATTTTTGGGGTAATTTTGAGGTTTCTATTGTAGATTCTTGTTTGAGGTAATGAAATTAGTGATTTTCGGCTAATTTTGAAATATTTATCGCAGATTCTTGTTTGAGCAATAAAAATTAGTGATTTATTGAACCCAACTGTTCATATAACCAAAGCTCTTTATTTTCTGGAACTTTGAGGTAATTTATTGTAATCTGAACAGTAAATTTAGTGATTTTTGGGGGTTATTTTGAGGTTTTTATTGTAAATTCTTGTTTGAGTAATGAAATTAGTGATTTTTGGGTAATTTTGATTTATTTATCATAGATCCTTGTTTGACCAATTTAGGGTCAATTGTGTTTGACCCAAATCTTTAGAGAGTTAAAGTTGTTCACTTTCTGGAAGTTTGATGTAATTTATCATACTCTTAGCAGTAAGTGGTAATTTATTGTAACTTATCTTCTTTGAACGGTGACTATAGTGATTTGTGGGGTAATTTGAGGTATTTATCATAATGTTCTTGCTTGAGTGGTAAAATGTTGTTATTTTGGGATTTGTTTTCATCAATGGTGTACAACCTAAAGCTCTTAACTTTCTGAAAGTTTGAGGTAATTCAACATATCTGTTATTGTTTGAGCATGAAATTGAGTGATTTATGCCCTCAGGGCTTTAGTCAAAGTGGTAAGAGCCCAATACGTGACGTTGGGTTAGGCGCACAACACGGGTTAGAACAGTGACACAGTCAAAAGCCTGGTATTTAAGTGTGGTTAGGGTAGAGGGGCGGGCCTGTCATTGGGCGAGTTTTGAACTGTGCACCGCTAGCCGTTGGGGATTTTTCGGTTATCAAAAGAATAAAAAATTGAGTGGTTCTGGGGGCTGTATTATCAGTTGTGTTCAACCTGAATATTTAGATTCCCAATGTTTATTGCATTTTAATAGTTTGAGGTAAATCTTTTATTTCCCCCTTAAAACCTTTTGTCATTGAAAAAACAAATATAGAAAAGGAAGCTCTTTTGTTAATCCTTGATTTGTAGGCTGTAATTGCGGAAAATGGAATGGGTGAATGGAAGGTTGGAAGCAGACCTTTATAAATGCAATAAGATGAAAGGGGAAAGTAAGTTAAAACTATAAGTTTGGATCACACTTTTGACGTCAACAATATTTAAAGTTTATTGGAATATCATATAAATATGGGCAGGTATGCCTTTCTGCTTACTAAACTATGGTGTGTTGACTTTTTATTGTAGATCTAAAATAAATAGATAATGTTATTTATCTCTTAAGTGTTTAAAGTTTTAGATGAGATGATTCACACACTTTAACTGGGCAACAGAGTAGAGAGTAGAAGGCCCCATGTTCGAGTCTTGTTTCCAATCATCTAACAAAATTGTTACGCATGCTTGGCTCAATAGAAAGAATCAGGTGCTGCACAAGAGAGCATGTTGTGACCTAAAATAAATAAATAAATAAGAGTGGCTTCCCTTTAATAATATGAGTTCTTAGATGAGACGGTTACACATTTAAATAGTTTCATCTGGACAGAGTATTTGGGATAGTTTTTGTTTTATGTTTAAATGAAGCTTACAAAGGTCTAAGAGCTTTTCATCCATTGCATTGACATTGTAATGCCATTTTGTATTCAAGTATGACTCTCCTTAGAATCTCAATGCTAAATCTGTGTTCTATTTCATGTAAAGCCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAGGTTTGCTCGTATCCATATACTACTAAGTGATAAAATTATCAAACAATATTTCATGTATGCTGAATTTATATTAATACCCATTTTCATTTATTCTAACTCATGAAGTTTTTTCAATGATTAAATGCTACGTAGATGCCTTGGTAGTTGTTGTCAGCCATTCTTTATGTCATAATCTTTGTTGCATTGCTATATGGCTCTTATGCCTATTCTTTCCTTTTGTAATTTCTTTTATTTTTCTCTTCCTGGTTACTAAAGAAAATTTAGGAAATAGGTGTCAAGATTTGGCCATTTCTTTTAGTGTACATATTTATATGTCTGTGTACGTCAGTCTTCAGTTATACTGCAAGGTCAAAGAACAGCCCTTAGTATCACAGCTTAAAAACCCTGTAAAAACTGTTGAAATATGTTCCAATACATGAGTCATCACAAAGAGAAATATTGTCCATTCACTCATCAATTTGTTTTGTTAATACTTCAGACCTGATCTTTCAACATACTTTTTACTTTATTTTTGTATAAGAAATAAAGTTTTGATGGGACTTCAACTCCTATCTCTTCTCTCTCTTATTTTTTTTATTTTTTTTTAAAGAAAAACTCCTATCTCTTCTCTGAAGTTCAAGTGTTTGATCCTTCTTTTCAACTGGAGCAATTTAGCCCCTGTAAGTGATGTTATTCCTCTTGTAGATTTCATTAGCTCCTTGTCTTTGGCTTAACAGCCTTGGTCATTTAGAGAAATGGCTCAATGCTCTATCAGTAGTTTTTTTTGTATCTAGGAGCTTTCCCTTTTTCTCCTTTGTTCTCATTCAGCATCTTCTTGATGCCAGTCAATATGACAATTAATTCATAAAAAAAAAACTTTACTTTGTATAAGAAGATCAGGGGTAATCTAGCCGTGAATAGTTGAATGGTCAATCTGCAAGTTTGTTCTAAATTTACTTAGGACCTACAATTACTTTCTTCAAAGTTTTACTTCTAATTGTTGCTTATCATAAAAGAAATAAAGAGAGTTTCAATTCCACTTGTTACAATTGCATTGTAAATGAGAAGCAAATAGAGGATTCTCAATTATTATTTTTCGTTTCAATAGGCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAGGTATAACTTCTGTTGTCTCTTATGTTTTACGCTGCTGTCATAGAATGTTAAATAGAGAAATATTATCTCCTCGAAATACCAGAAAAGGACAGAAGGATGAACTTTGTCATGACTCGACTCTCACTGCTTCACCCAATCCTGTAATAGTACCTAGGATCAACTTTGAATTCTGAAAATACAAAAGGAAAGAGGATCATCACATCAGAGAGTTTTATCTTGCATTCTCTTAGTGTATGCAAGTCTTAACTTGTAGCAATATTCCACCCTAGCTCCTCTGATTTAGCATAACTCTATGGACCCGGTTGACACTCTTTCTCCAAAGCACTAGATAGTAACATTCTTGAGTTTAGGAATTTCTGTTAATAGGATGATCAATCAGAATATGTACAAAGAAGGAAGAAAATATATCCATATATTTTAGTTCATTTAAGTTTTAACGAAAAGCATAAAATAAAGAAATCAATCTCCACATCAGTATATTTTCCGACAGGAAAACTTAAGTTAATGTCCTCTATTCTTTTCTTCACTGCTTTTTGCGACAAGTGAAAGTTTGTGATGATTCCTTATAGCTTTTTGCTGTATCTTGTCCTTCATCTAAAATTCAAAGGATGTCCTTATCAACATGTTATACAATCTTGATTTGCTCCTTGGAAATAAAATATTTTCAAACGTTATTCTACTCAAGTAGTATATAGGATTAGTCATGGTTTAGAAAATTTGGTGTTTGAAGCTGGAAGGTGTTTACATCTGTTGAGTGTATCCTCCTAACCTTACTCAAGCTTACTGAGAAGTTCCTTTTTTGGTTAGTAGTCTTTATGAAATGCCATATCATGAAATGAGAAATAATATTTGTGAGCATGTGCATATTTTCAACCCAGGGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTGGTATGTTGTAACATCCTAACTTGATATAGAGATTCCAATATAAACTAATAAAAGATAAAAAAGATGATGATGTCTTGATGACCTCAGGCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</genome_strand>
        <mrna_strand>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG.......................................................................................GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U325813" ref_strand="-" ref_description="SGN-U325813        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | GRAM domain-containing protein / ABA-responsive protein-related, contains similarity to ABA-responsive protein in barley (GI:4103635) (Hordeum vulgare) (J. Exp. Bot. 50, 727-728 (1999); contains Pfam PF02893: GRAM domain | chr5:7863334-7864274 REVERSE | Aliases: MKD15.23, MKD15_23(evalue: 5e-53, score=204) genbank/nr: gi|50911012|ref|XP_466939.1| ABA-responsive protein-like [Oryza sativa (japonica cultivar-group)] >gi|49388696|dbj|BAD25877.1| ABA-responsive protein-like [Oryza sativa (japonica cultivar-group)] >gi|49387971|dbj|BAD25079.1| ABA-responsive protein-like [Oryza sativa (japonica cultivar-group)] (evalue: 6e-52, score=207)">
      <seq>tcccacataccttcaaaatacagtaatactccacctcaaaccagaatcacaatggacttactccgtggaaattcggtgggtattcccatgagttcatcagtaggttcacttgaaagccagccgaaaagactacttgccttacctgcttgcgaagaccatatcgttccatatgcaacttcaaagaacttgtctcaaattaagcagagaagatatgtcattggtaagatgaacaaattgggagaaagggtggattgtctagtaaaaagcatccgcgagcatgtgagcctaagcccgaaactaacagaaactttaaagggaaaattgagccttggagcaaaaatccttcaagtaggagggttggagaaaatattcaggcagaagttcagtgttagagatgatgaaaagctattgaatgtttctcaatgctatttatcaacgacagctggtccaatagcaggccttctcttcatctctaccgataagattgctttctgcagcgagagatcaataaagctcttatctccaactggaaagttgcttagaatctactataaggtaaccatcccaataagtaagataatgaaagcaaaagagagcaaaaatatgcaaaagccatcacagaagtatatacaagtaattacagaggatgattttgagttctggtttatgggattcctcaatcatcaaaagacactgagatatctgcagcaggcaatctccagctcaagcaagttatgaagacacatttttttttctaatgagctcgttcttcaatgtaaaacgttcatgcaaaaacgaattcagggatctgttaaaactttgtaactagatccattgctcaaaggaggcttaaggtttaacctttgtgcccttaagagttaatgggaatgtatagacttttttttctctaaaactggtagcttttgtatagacttattttgttttttgagatagcaagagatacgaatgtacaaatttattataaaacttgtggagatagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="57942" stop="55767"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57642" g_stop="57438" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="57437" i_stop="57345" i_length="93">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57344" g_stop="57270" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="280" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57269" i_stop="56869" i_length="401">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56868" g_stop="56594" g_length="275"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="555" r_length="275" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56593" i_stop="56514" i_length="80">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56513" g_stop="56067" g_length="447"/>
          <reference_exon_boundary r_type="cDNA" r_start="556" r_stop="1002" r_length="447" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U325813" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1002</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U325813" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57642" e_stop="57438"/>
          <exon e_start="57344" e_stop="57270"/>
          <exon e_start="56868" e_stop="56594"/>
          <exon e_start="56513" e_stop="56067"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACATACCTTCAAAATACAGTAATACTCCACCTCAAACCAGAATCACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGAGTGAGTATTTCCCTGGTCCCTTGATGAAGAATCAACTTGATCTAAACCTTGAATGAAGAGATCATAAAAATAACAATATTCTTGAATATGCAGGAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATGGTAAGCGCTTAAAATTCTCTATAAAAGACTTAAATATATCTATTGAAAATATTACTGAGATAATAGTTTGTTTTAAGTCGAAAAATAAGTATTTGAACTTAAAGTTTGTGTCTGGACATGAACTCCATTTGAAAAAAAAAAGAAGGTTAAAGCGAAAACAATTATCTCACTCAAAAATGCTACTCAGACAAGTTAATTCCATACTATACCAGCCTTTCAAATGCTAAAATGTTCACCAATTGCGAATACTGATGGACAAACTTCACCTTTAAGTATTTGCAAGTGAAGTCATGACCAAACACTAGTGTAAATCTAAAGAACTCAGAGAAGTGAGTAATAAGTACAAAATTCATGTAAACATGACAGAAAATATTGATTCTAAATGTACTCTGATTGTGCAGTGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAGGTATAACTCTGCTCCATTTTTCTTCCAACTTTTCATTTTCTAACCACGTAAAGCATAATCTAACTGGTTCACAATGGCAGGTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTCTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAGAGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</genome_strand>
        <mrna_strand>TCCCACATACCTTCAAAATACAGTAATACTCCACCTCAAACCAGAATCACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGA.............................................................................................GAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATG.................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAG................................................................................GTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTCTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAGAGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U330305" ref_strand="+" ref_description="SGN-U330305        Tomato 200607 #1 [2 ESTs aligned] arabidopsis/peptide: | Symbol: None | GRAM domain-containing protein / ABA-responsive protein-related, contains similarity to ABA-responsive protein in barley (GI:4103635) (Hordeum vulgare) (J. Exp. Bot. 50, 727-728 (1999); contains Pfam PF02893: GRAM domain | chr5:7863334-7864274 REVERSE | Aliases: MKD15.23, MKD15_23(evalue: 9e-08, score=52) genbank/nr: gi|56542469|gb|AAV92899.1| Avr9/Cf-9 rapidly elicited protein 140 [Nicotiana tabacum] (evalue: 6e-07, score=55.8)">
      <seq>tatggaaaagccatcacaaaagtatatacagttagttacagaggacgattacgagttctggtttatggggttctttaataatcaaaaaactctaagatatctgcagcaggcaatttcaactttcacaaacttcaatcagctaagacgatagttttttaattttattttgtttcctaatacacccattcatcaatgtaaaatgttgatgcaagatgcagatatgttcaaacttgtaactagctccattgctcaaaggaggttttagattttttaggctttaagcctaagttgttaatacgaatgtatagacttattgtaaaactaatcaaacaggaggctaattcatcttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="62752" stop="61804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62452" g_stop="62104" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="349" r_length="349" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="370"/>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U330305" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U330305" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62452" e_stop="62104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATGGAAAAGCCATCACAGAAGTATATACAGTTAGTTACAGAGGACGATTACGAGTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</genome_strand>
        <mrna_strand>TATGGAAAAGCCATCACAAAAGTATATACAGTTAGTTACAGAGGACGATTACGAGTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U323512" ref_strand="+" ref_description="SGN-U323512        Tomato 200607 #1 [6 ESTs aligned] arabidopsis/peptide: AT3G50150.1 | Symbol: None | expressed protein, contains Pfam profile PF03140: Plant protein of unknown function; expression supported by MPSS | chr3:18606792-18608534 REVERSE | Aliases: F3A4.230 (evalue: 8e-22, score=100) genbank/nr: gi|15229684|ref|NP_190584.1| hypothetical protein [Arabidopsis thaliana] gi|11291790|pir||T45868 hypothetical protein F3A4.230 - Arabidopsis thaliana gi|6522936|emb|CAB62123.1| putative protein [Arabidopsis thaliana](evalue: 6e-20, score=100)">
      <seq>gagagttgaataaatacaaaagaagaaacagccaaaccaaagagaatttatcgttcaaggaaaagggatggaacactccattgaaatagatgatcaaattccactgctttctcaaacttatcaagatgagatagaaggagggaggaaagtggatcctttatttgagaatttattcaattcgcgtgttaaaccaattagcatattcaaagtaaatgtggggctacgtgaatcaaatccagatgcttatacaccaaagatggtctctattggtccttaccataatggaaaacctcaatttcgtccaatgcaaaagaacaaactattgtacctacgacggtttcttagacgaaaggagaggcttgatgtggatagttgcatcaatgagttggaggaggaagcaaggaattgttacgatgatatagaagacctcaaaattggaagccgcgaattttgcgagatgttattacttgatggttgttttgtggttgagtttattcgagagcgttttgagataggcccaagacaagaagacgaaatcatcaaaagtgacattggttgcatatataatcaaatactccgagatttgatgttactagaaaaccaacttcctttctttgtcctcgacaagcttcatgagatgacaaagcaagatgatgaactcccattggcaatacaagctgtgatctcatttactttttttgttgacttagaaaaattgatcgatcaacataagtatgaacccttaataaatatagcatctaacgcacgtgatatcaaacatttacttcatgcagtacacatactttcatgtcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="+" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="86668" stop="96068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86970" g_stop="86998" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="16" r_stop="44" r_length="29" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86999" i_stop="94708" i_length="7710">
            <donor d_prob="0.979" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="94709" g_stop="94794" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="130" r_length="86" r_score="0.977"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="94795" i_stop="95083" i_length="289">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.861" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="95084" g_stop="95768" g_length="685"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="815" r_length="685" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="+" ref_id="SGN-U323512" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U323512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="86970" e_stop="86998"/>
          <exon e_start="94709" e_stop="94794"/>
          <exon e_start="95084" e_stop="95768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAAGAAGAAACAGCCAAACTAAATTGGTAATTTTCTGCATTTTCTCGTTCTTTGCTAAAATAATATCAATTTATTATAGCTAAAACGTTACCCATAGTAATGTTTCTTTAGAATTCTAGTGATTTTTACATATATATATATATATATATATATATATATATTATTTATTAAGTCTATAGTCTACTCCGTAGAATATCAACTAAATTTTCCTATGTTCACAAAAAGAGGATGAATTCTCAAATCTCAACCTTGAGTCTATGAATGATCCTTTAATTTGCCTTTGCCTTTGCCTCCAACGTTATTACAAGTAACGTAATTATCTAGAAAACGTGTCTCAGAGTGACGAATTATAGAACCTTATTAATAATAACATTTTATATTTATTTTACTCTGTCAGACCTTTATCTTTTTGTCATTGAATTCTATTGAATGAAATAAAGCCAAAACATTATTAAGAAATATTTTTCTTCTAATTTTGTAAAATTTAAACAACTCTCAACTATATAAATTAATTTTTTTTATTTCATTAACTCATTTTTCTTTTGGCAATTAACAATATAATCTTTTGCTATATAAGTGCATGAATTTCAAGAGATTATAGAATTTTTTAGACTATTTCCTTTCATATAATCGTGGTTTTACAATTATTGGGTTCTTTTTATTTGAGTCCGGTTTGGAGGGGTAATTTTTTAAAGTCACGTGATATTTTTAAAATTAAAAATTAATAATATATATTTTTTAATTCATTCTATTTACAGGGTAAATATGCATCATTTACACTATGTTTGGATCATTGTTATCTATTGTATTGTATTGTGTTGGTACTATACCTACAATGTTTGTTTTGATTGTTACTTAAAATGTATTGTACTGTATTGTTAAATTTCGTTGTTACGTAACAATGAAATCCCTATTTTATGGAACAACCAATTTGGTGTGTTCCCGTTGTTACTTAATTTCTTTTTTCAGTTATATCTTTACATCATATTTTAAAATACTATTTTACCCTCACCTTAATTATTTAAATCTAGTCAAACCTCTTACCCTAGAATAATTAAGGACAATTAAGTAAATTTATAAATTACAATACAGTACGATATAATCAAACCAAACAATTAAAATGTTACTAAACAACAAATAAATAATATAATCTAGTCAAACATTGTATCTACCATACAATACAGTATATTTGAGTTCAATACAATACATACACTATTAAACGGTAACAATGATCTAAACAAAATGGTAAAGGGCATGTTTGGCAACACTTTAACTTTAACTTTCCACATGACATGTTTAAGACCACAAGATTAAAGGGCATTTTGGTACATTTGACATAACTTCAATTTAGAACCACAAGATTAAAAAGTTTTCTTTCTTTTTTTAAACTCTGTTCCAAGTCAAACTAGGACATTCTTTTTGAAACGAAAGAAGTATGTAAATTTCCTAATAAGTTATAACTAATCCATACATTACTCATACATGCATAACTTTAATATGCTACCAAACAACCCCTTTAAGGTATACAATACACATTATTCTTTTAAAATTTTTTTGCAATTAAGTGTCTAATACTCCCTCAATTTTCCATTAATGTATTACTTTGGATAATAACAATAATAGTCATGGTATCTAATTACAAAGAATGTGTCTTTTGTAGGATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATTAATGTGTCTACCCTCACATCCTTAACCCACATGCCGATCTTAATTGTGGTTGCTTTGATTTTATACAAATATTATTTTCAAATATTACATTTAACTTATTTATCAAACATTAAAAATAAATAAGAATCTTACATATTTTCATAAAAATAATAGCAAATCTTCCATCATACTGAACACACCCTAAACACTTACCAAATTTAAGAATAAATAGTGGCTTGAACACACACTCAAAGTGTTATTCTATGATATGTTTTCTTAAATATAATGTCTATATACACTTTATTCTATTATACTTAAAACTTTATTTATTCTCTTATACATTACTCAAAATGCACACAATTTCATGTAAGTAATATAAGTAGGTTCGCAATTAATCTATATATAGTAAGCCCATATACAATTTGATATTCATCATCTCTCATATTCCTTCACCTTCATAACAATTGAGCGGAGCAAAATAATTTAAGAAGAAACTCAAGTGCAATCCAACTAGTCCATTTTGAATCAGGTAATTTTTAAATGTCTTATATAACATCCTATCCAATACACTATAACAAATAAAAAAAATTTGTGAGAATATTAATTATAATTTCTATTATATTATATTTAATGGTAATAATATAATATGGATATTTAATAACCAACATTATAGATAAATTTGATTAAGTAGTAATTGTCTCAATCGTACCTAAAGTTCCATCTCCTAAACAAAATACTAGTATGCTACTTATATTGATTACGAGGTATTTTATTAATTCGAGTAGTAAGTTGTAAGATATTAGATATCTTTATTTTAATATAGGGGGAAAAATCTGATATATCCCTCAACTTTGTCATTTAGAGCTAATATACGCCTTGTTATGAAAGTGGCCCATATATATCCCTACTTGTAAATAAATGGCTCACATATACCCTTTTCCTCTAACGGAAATGAAAAAAATATTAATTTTAATCTAATTTTTTATTAATTTTTTCTAAAAATATAATCCCATATGAGTAATTTAATCCTCGTCAAACATATTTTTTTTGATTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTATGTTTCACTAATATTCTTGTAAAACTTATTGTAGATGATCAGTTTTTTTCTTCGAATACGAAATTAAATTACAATACACACAAAAAAATAGTTTAATTTTTTATTCTTTAAATTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATGATATAAGAAGTCAAAAAATAATTTATGTATTAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATGTACCATAAATATTTTTTTAAAAAAAATTAGAAGTAATAAATATAAATTTAAAACTAATTTTTTAACTTCCGTTAAATGAAGGATATATGTGAGTCATTTTCTAACGGCAGGGCTATATGTGAGCCATTTTGTAACGGCAGGGGTATATGTGAGCCGTTTATATAACGGTAAGGGCATATATGTGCCACTTTTATAACGAGGGGTATATCAGCTCCAAATGACAAAGTTGAGAGGTATATCAGACCCTATTCCCTTTTATGTATGTATTAATATGTAAAGATTAGCTATTCTGCATAAGTTATTCTATTCTATCTTGCATAAAATAATACATAGATTCTCTCATATCTTATAATACATATATATCATATACGAGTTTCTAAGTTGTCAATCAAATGTCATATTAATATCTACCTACCAATTAACACCATATAAATTATAGAATAATTAATAAGTGAATAACTTTTTTCTTATAAATTGATATTATTACCTCTTTGGTTTGGCTGTTTCTTCTTTTGTATTTATTCAACTCTTGCTTCTCCCGGATTTTTCATTGCTATGAAGTACTTATTATGTATAGAGAAAAAAAAGAGAGAGATTGATAAATACTGTTAATTGTAGGGTAGGGGGTGTCAATGTTAGGTTCGATCGATTATTTTATAAAATTTATCCAAAGGTATAGTATCATCTTCAACTTCATCATCTCATTATTTTTTTGGGTGGTATTCACAATTTCTTCTATGTTCTGGACCTCTTAACATGTTTCACTGTCACTCGGATAATCCAACAGGTTATTGACATCCATTTTATTTTGGTAACCGAGACCATTAATCAATGACCTCAAGTTCATTAGTGAGGTTTTCACAAGTAGGTTCATTATAATTCTCTGAGATTACATCCCCTGAACGAATTTTACATTGTCGAAAAACTATTTGTGATTATCTCTTGCTGAACATTTTTTGTCCAAACAGGGATTGCAAAATTGACAACATCCAAAATATTAATCTTTAGTGGATTAGTTTGTTCCACTACATAGTCTTCTAATATTCTACAATGAAATATCTTGAAAACTCTTATTATCCCAACATCACAAGAATGAAATTAGTAAGATACAATAATTTGATATATTCGTTGTATTTATGTATCACATTTTTTAATGTGAAATCAATAAATTAAATATGATACATAAACTTGTAAGATACAATGATTTTGATATATTCAAAATTAACCTTCATTAAAACTTAAATCATTCTTTAAATTAATATATATATATTATCGATTACATAATATCTCTATAATATAATAAAATGTCATGATCCAACTATATTAATTTATATAGATTTTACCGTAGTAAAAAGGACTACATTTTCTTTGTTGCTGTTAATAAAAGTCGTAGGACTATTCTTGTAATTTCTTATTCTTCGACTTCTAGCTATTGCTATTTATGATTTCGTGTAGTTCAATTATAATATTATTTTGTTGTAGTACTGTTATGCTATACTATTTTTTTTATAAAAAAAACTATCTATTGCTTTTTGTACTTAATTTTATTACGTCTTTTCTGAATTGTTTTTATCTTGAGCCGAAGATCTATCGAGAATAACCTCTTCATATCACATAATACCAAGTATACTTTCGTAGAATAATTTTAAAAACTCTCTAGACACTTTTACAATTTAAAAAGTATGAATCAAATAATATAATCGGAGGTAACAATAAATATTCATCCCACTATTTTACCGTAATGTAAAATGGAGTTAAACAAAGATAGAAAAATTGAAACGTATGGGCTCAAGAATTAGGTTTACTAAAATTAAGTATCTATTTAATAAGAGATTTAGTATCGTGGCTTTTCGATATTTAATATTTTATATTTTTATTGGGTGTGTTTGGTAAGAAGGAAAATGTTTTTCGTTGAAATTTTTTTCTTAAAAAACATGTTGATTTCTAACTTATTTTCTCATGTTTGGTTGGTGAGTGAAAAAATATTTCCTATTATTTGATTAATGAATGAAAATATTTTTTTCTCCAGAATTTATCTTTTATTTTATGAATAGAGAGTAGAAAATCTCTTTAGGAAAATAATTTCTAACATAAAAATCAACCCCACCCCAACGACCGATTCGAGACTGGTCCCCATGACCGATTCGGGATCCGACCTTAATCCCCAAATTAGGAGACCCTAACTCCTAATCCAAAACATGGTATTCGAATTGAGACCTGACCCTGACCCTGACATCTGATCCAAGACTTGACTTCAACTCTCGATTCGAGACTCGATCCCAACCTCGACACCCGAACCAACACAAGACCCCAACGATCTATTCAAATTCCAACTCTAAGACCTAAACCTAACTTTTGCCCGAGACCTAACATTCAAAAAATGACCCCACCCCGACACTTGCATCGACATTCGATATGGGACCTAGCCCCGACTCCCAATCTAGAACTCAACTTTCGAACGGGGACGGCGGGACCCAACTCGACTTCCGACCCAAGATTCAACTTCCAAATTGAGATTCGACCCTGACTATCAAATCGGGACTCGGGTCCACCCTGACTAGGAACCTGACTTCCGAATCGGGATTTAAATTTCTTATTTTAAAAAAAATAATTCTTTTTTGGCGGTGGGGTGGTAAGGAGTTGAGATAGGAGTGGAATAAAAATAACAGAAATAGTTAAAATTTGAAATATTTGTAAAAAAACAAACTGGGTGGACCGGTGGGGGTAAAAATCAGAAATTTTTAAAATTTGAGGTTTTTCAATCTTTTTACGTTGGGGGTTGAGGCTAGTTTAGAGGTAGGCATTAATAAAATGAAATTATTTTTAAAAAAAAAAATTAAAATTTTTAAATTTTAACTTGGAGAAGAGTTTAATTATTTACTTTATTTTTAAAGGTAAGTTATTTTTTAAAATTTTAAAAAAAAAGTTTGAATTGAAAAATATTTTCCAAATATTTAATCCAACCGAATATATCACTCAAACACACCTGTTCTTGGCCGACGACTCAAGTCAATGACTAAATATTTTCCACTATATTTAACTTTTGAGTACGAAAGTTAGGTCTAAAATTAATATCACAAAGATAAGGTAGTTGAGAAGGTTCTTTAATACCACAACAAAAAGTACAAACATATTATTTAATTTTAGTTTCAAGAAGACTTTATTTCTCTGTCTCCTTTTGAGTAAATTAATTATCAAGTATATCATCAACGAGGATCTATTTGAAGTTGAGAGTACTCTTTATTTTTAATCAAAAGTCTTAACTGTTAGGGAACACTTTACTTTTTTTCTTTTAGCCATTAATATGAAACTTTGTTCACACATTTTCAATAATCGAACAGGCAAAGAAACTAAGTTGAACCCTATCCTATCTTGCCAAACCACTTACCAATATGAAATAACATATATATATATATATATATATATATATATATATATATATATATTAAAACTCTATAAAACGTGTTTAATTCAAGAGAAAAGGGTCTGATATACTCCTCAACTTTGTCATTTGTAGCTGATATACCCCTCGTTGTGAAATTGGCTCATACATACCCTTACCGTTATACAAACGGCTCACATATACCCCTGCCGTTACAAAATGGCTCACATAAACCCTTCATTTAACGGAAGTTTTAAGAAAATTAGTTTTAAATTTATATTTATTACTTTTAGGGGTATATATGATTCTTCTATCAAAGTTCAAAGTATATTTTAATTTTTTTAATACATCAATTATTTTTTGACTTCTTTTATTATAATTATTTGAGTTTCTTATTCTTACATTGTTTTTTTCTTTCATTCCTTTGTTTAAAGAAAAAAAAATTAAACATTTTTTTGTCTATATTGTAGTTTGATTTTTGTATTCGAAGAAAAAAATTTGATCATCTACAATAAGTTTTACAAGAATATTAGTGAAACATAAATAAATTTGATTATCAAAATAATAATTCTAAATTAGTCATTGAAACAAAAAAAAGTCAAAAAAATATGTTTGACGAGGATTAAATTTACTCATATAGGATTATATATTGTAGAAAAAATAATAAAAATTTAGATTAAAATTATCTTCTTTTTTTTTCATTTCCGTTAGAGGAAAAGGGTATATGTGAGTCATTTGTTTATAAGTAGGGGTATATATGAGTCAATTTCATAACAAGGGGTATATCAACTCCAAATGACAAAATTTAGGGGTATATCAGACCGTTTTCCCTACATAAAATAATATTCCCTTTGTTTCAAAAAGAATGTCCATATTTCATTTTTAATTTGTTTAAAAAAGAATGACCCCTTTTCTTTTTTGACAACACTTTAACTTTTCACGTAACATGTTTAAGACCACAAGATTAAAGGACATTTTGGCACATTTGACATAACTTTAATTTAGAATCACAAGATTAAAAAATCTTCTTTCTTTTCTTAAATTATGTTCCAAGTCAAACTGGGGCATTCTTTTTTAAACGAAAGAAGTATATAGATTTCCTCATAAGTTATAACTAATCCCTACATTACTCATACCTGCGTAACTTTAATATGCTACCAAACAACCCCTGTAAGGTATACAATACACATTATATTCTTAATTTTTTATTTTTTTTTGCAATTAAGTGTCTAATACTCCCCCAATTTGCCATTAATGTATTGCTTTGGATAATAACAATAATAGTCATGGTATCTAATTACAAAGAATGTGTTTTTTGTAGGATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAGGTTTTTTTTTTCTCTCAACTATACAAATATATAATTTTTTAGATTATTTCCTTTCCTATAATTTTAGGGACAAAGAACATAGATGAGTAAGTTTTTAAAGTCAAATGATATTTTTAGAATTAAAAAATTCTTAATTCGTCGTGTTTATAAAATGCATAAAGAAAGAAAGAAGGTATATATGCACTAATTTTTTTTTATCGAGACATATATTCGATCTACAAAATTGAGACCTTTTACACTTAACAAAAAAAAGTTGTTTCTAATAAACATTTTACCCTTTTAGTTACAGATAGAAGGAGGGATGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGTCTTGATTTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAATATTGGAAGCCGCGAATTTTGCAAGATGTTGTTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTGTTGAGATAGGCCCAAGACTAGAAGACGAAATCATCAAAAGTGACATTGGTTGCATATATAAGCAAATACTCCGAGATTTGATGTTACTAAAAAACCAACTTCCTTTCTTTGTCCTCGACAAGCTTCATGAGATGACAAAGCAAGATGATGATATCCCATTGGCAATACAAGCTGTGAAGTCGTTTACTTCTTTTGTTGACATAGAAGAAATTATCCATAAACATTCCGATTCACCCTTAATAAAGATAGCATCTAACGCAGGTGATATCAAACATTTACTTCATGCAGTACACATACTTTCATGTCATG</genome_strand>
        <mrna_strand>ACAAAAGAAGAAACAGCCAAACCAAAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTATCGTTCAAGGAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAG.................................................................................................................................................................................................................................................................................................ATAGAAGGAGGGAGGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGGCTTGATGTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAAAATTGGAAGCCGCGAATTTTGCGAGATGTTATTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTTTTGAGATAGGCCCAAGACAAGAAGACGAAATCATCAAAAGTGACATTGGTTGCATATATAATCAAATACTCCGAGATTTGATGTTACTAGAAAACCAACTTCCTTTCTTTGTCCTCGACAAGCTTCATGAGATGACAAAGCAAGATGATGAACTCCCATTGGCAATACAAGCTGTGATCTCATTTACTTTTTTTGTTGACTTAGAAAAATTGATCGATCAACATAAGTATGAACCCTTAATAAATATAGCATCTAACGCACGTGATATCAAACATTTACTTCATGCAGTACACATACTTTCATGTCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U341428" ref_strand="+" ref_description="SGN-U341428        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aatgtagggattagttataacttatgaggaaatctatatactttctccatttcaaaaagaatgccctagtttgacttggaacaaagtttaagaaaagaaagaagactttttaattttgtggttttaaagtgttgccaaaaaggaaatagagacattctttttttaaacggagggagtattattttatgtatgtattattaatatgtaaagattagttattcatgcataagttattctattctatctcgcataaaataatacatagattctctcatatcttataatatatatacatcttatacgagtttctaaattgtcaatcaaatgtcatattaatgcctacctaccaattaacaccatataaattatacaataattaataagtgaataactttttccttataaattgatattattacctctttggtttggctgtttcttcttttgtatttattcaactcttgcttctctcggatttttcattgctatgaagtacttattatatagagaaaaaaaagaagagagagattgataaatactgttaattgtagggtagggggtgtcaatgttangttcgatcgattattttataaaatttaaataaaggtatagtatcatcttcaacttcatcatctca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04HBa0332P16-Hreys/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04HBa0332P16.1" temp_strand="-" temp_description="C04HBa0332P16.1  CU928471.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0332P16 sequenced_by:sanger upload_account_name:uk">
        <position start="108905" stop="107670"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108605" g_stop="107970" g_length="636"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="637" r_length="637" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04HBa0332P16.1" gen_strand="-" ref_id="SGN-U341428" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>636</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04HBa0332P16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U341428" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108605" e_stop="107970"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGTAGGGATTAGTTATAACTTATGAGGAAATCTATATACTTTCTCCATTTCAAAAAGAATGCCCTAGTTTGACTTGGAACAAAGTTTAAGAAAAGAAAGAAGACTTTTTAATTTTGTGGTTTTAAAGTGTTGCCAAAAAGGAAATAGAGACATTC-TTTTTTAAACGGAGGGAGTATTATTTTATGTATGTATTATTAATATGTAAAGATTAGTTATTCATGCATAAGTTATTCTATTCTATCTCGCATAAAATAATACATAGATTCTCTCATATCTTATAATATATATACATCTTATACGAGTTTCTAAATTGTCAATCAAATGTCATATTAATGCCTACCTACCAATTAACACCATATAAATTATACAATAATTAATAAGTGAATAACTTTTTCCTTATAAATTGATATTATTACCTCTTTGGTTTGGCTGTTTCTTCTTTTGTATTTATTCAACTCTTGCTTCTCTCGGATTTTTCATTGCTATGAAGTACTTATTATATAGAGAAAAAAAAGAAGAGAGAGATTGATAAATACTGTTAATTGTAGGGTAGGGGGTGTCAATGTTAGGTTCGATCGATTATTTTATAAAATTTAAATAAAGGTATAGTATCATCTTCAACTTCATCATCTCA</genome_strand>
        <mrna_strand>AATGTAGGGATTAGTTATAACTTATGAGGAAATCTATATACTTTCTCCATTTCAAAAAGAATGCCCTAGTTTGACTTGGAACAAAGTTTAAGAAAAGAAAGAAGACTTTTTAATTTTGTGGTTTTAAAGTGTTGCCAAAAAGGAAATAGAGACATTCTTTTTTTAAACGGAGGGAGTATTATTTTATGTATGTATTATTAATATGTAAAGATTAGTTATTCATGCATAAGTTATTCTATTCTATCTCGCATAAAATAATACATAGATTCTCTCATATCTTATAATATATATACATCTTATACGAGTTTCTAAATTGTCAATCAAATGTCATATTAATGCCTACCTACCAATTAACACCATATAAATTATACAATAATTAATAAGTGAATAACTTTTTCCTTATAAATTGATATTATTACCTCTTTGGTTTGGCTGTTTCTTCTTTTGTATTTATTCAACTCTTGCTTCTCTCGGATTTTTCATTGCTATGAAGTACTTATTATATAGAGAAAAAAAAGAAGAGAGAGATTGATAAATACTGTTAATTGTAGGGTAGGGGGTGTCAATGTTANGTTCGATCGATTATTTTATAAAATTTAAATAAAGGTATAGTATCATCTTCAACTTCATCATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>15</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="5293" PGL_stop="11414"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5293" e_stop="6376"/>
            <exon e_start="6477" e_stop="6813"/>
            <exon e_start="8875" e_stop="9480"/>
            <exon e_start="10443" e_stop="10591"/>
            <exon e_start="10870" e_stop="10999"/>
            <exon e_start="11084" e_stop="11414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.894" e_score="0.994"/>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.930" acc_prob="0.814" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="5293" e_stop="6376" e_length="1084"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.894">
            <gDNA_intron_boundary i_start="6377" i_stop="6476" i_length="100"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="6477" e_stop="6813" e_length="337"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6814" i_stop="8874" i_length="2061"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8875" e_stop="9480" e_length="606"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9481" i_stop="10442" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10443" e_stop="10591" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10592" i_stop="10869" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10870" e_stop="10999" e_length="130"/>
          </exon>
          <intron i_serial="5" don_prob="0.930" acc_prob="0.814">
            <gDNA_intron_boundary i_start="11000" i_stop="11083" i_length="84"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="11084" e_stop="11414" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5293" stop="6376"/>
              <exon start="6477" stop="6491"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326880" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6321" stop="6376"/>
              <exon start="6477" stop="6813"/>
              <exon start="8875" stop="9480"/>
              <exon start="10443" stop="10591"/>
              <exon start="10870" stop="10999"/>
              <exon start="11084" stop="11414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319645" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAGTAATTTTGGAAGTTGATTTTGATTGTTTGTAAATGAGTTCCTTCTTTGTTGTTGTTTTGTTGCTGTATGAATATAAGGAGGAGTGCTTTCAGCTAATGAATTTTTTAATTTTATTTTTTGCTGTAAAAAAAAAAAGAGTAACTTTGGAAAATGGATGTTTACTTAAGGTGAGAAGAGTTTTAAGCTTATGAACTGATTTTGTTTGTTGAAAAATGAAAGAGAAGAAATAAATTTGGAAATTGAATTTTAGTTAAGGAGAAGATTTTCAGCTTATGAAACGGATTTTTAGTGAAGGAGAGGAATTTATTTGTCAAATACATTGATAGCCTTAAAAAGAGCAGAACTTTCGTATCTCTAACGGTGGAAATAATCTTACCTTAATCCAAACTATGATGATTTCAATTTAAAGAAACAAATTCTGTGTTCTATTTTTGATTTACTCATTTTAAGGAAGCATCCTCTCTAGTTGTTTACAGCTAAAATTCTGTAACTGATGCTATAGCTTAAAGATGTAGCTTTGGATGAAGTTTGCATTAGCGATGATCATATAGTGCCACATCCTAGTTGTGAACATGCCAATGAAGTTTCTCTCCCAGACTGATAGCCGTAAGAAACCCCGGTGTGAAATAATTGGTTTATTAAGAACCATAGGAGCAATCTTCTCTTAAATATAATAATCAGCAAAAGGGCAAAGAAGTTCCTCCTTTATATAGTACAATGATGGAGAAGGACTCGAGGGCTGGTAGGCTTGATTGCGTGTTCCCTTCTAAACATGATAAGGACTCTGTTGAAGAAGTTTCAAGTTTATCATCTGAAAATACTAGGACATCAAATGATTGCTCCAGAAGTAACAATATAGACTCCATTAGCGGTGAGGTCCAGCCCAATAACCCCATTCTGGATGACAAGAATTCTGCAGTTAGGGACAACTTGCATAGCTATCCTCTTGGTCCCGTTTCTCAGGCAGATGATGATCTTGGTTTTCTTGATAGTAATCATGAGGATAAAAGTAGTACCGAGCTCTTATATTATAACTGGCCTGAGATGGAAAACTTTGAGGATGTTGACAGGATGTTCGG : AAGTTGTGATTCAACATTTGGAGTTGGAGCTAGTATCGAAGATGACCTTGGTTGGTTTTCGTCATCTGGTGTTATTGAAGGATCTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAGGTATTCAGCAGCACAAGCAAGTTGATGGATCTGATTTTGGGTATTTTCAGGATGGCTTTTCTTACTTATCTTCAGATTACAGTCATTCAGATCAGACTACGGTTTGTCCAACCCTATCCACAATTAAATCTAAAAAAAGCTGTCTCGTGACTCTTTCTGCTAAGGACTCCTGTGCGACAAATCAGATGCAGTTGATGGAAAGCTTACCTGATCCTTCTTTTCAGGTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGATATTTGGACACGGAGACAGACACTAACTCTATAGATCGATCTATTGCTCACTTACTCTTCCACAGGCCTTCAAACTCATCAGTGATGGCTGATTCTTTGGCTTTGGAGTCACCTTCCACG : ATTTTCGAGACATTACTCAGCCCACCAATGATTGATGAGAACTTGATTTCTGCTGGAGAAAATGCAGCCGAACCAGATAAAGGCACGAAATATTAAACAGGCTTCTATACAAATGGGTTGTGTTTATTTCAATTTATGTCGCATGGACTCGCCTACATGTATGTGCATGTAAGTATCTGCTATGGATACTTATATACTCTTTTGTTGTTTAGTGTAATTCGAAGAATCTAAACAGTATGAGAATGAGGATCTATGTCAAATAGCTTACAGTTACTCGTGTGTTTGTGTATGAGAATTATCAAGAATCTCAAATGAGAAATTATTTCATGTA</gDNA_template>
            <first_frame> T  S  N  F  G  S  *  F  *  L  F  V  N  E  F  L  L  C  C  C  F  V  A  V  *  I  *  G  G  V  L  S  A  N  E  F  F  N  F  I  F  C  C  K  K  K  K  S  N  F  G  K  W  M  F  T  *  G  E  K  S  F  K  L  M  N  *  F  C  L  L  K  N  E  R  E  E  I  N  L  E  I  E  F  *  L  R  R  R  F  S  A  Y  E  T  D  F  *  *  R  R  G  I  Y  L  S  N  T  L  I  A  L  K  R  A  E  L  S  Y  L  *  R  W  K  *  S  Y  L  N  P  N  Y  D  D  F  N  L  K  K  Q  I  L  C  S  I  F  D  L  L  I  L  R  K  H  P  L  *  L  F  T  A  K  I  L  *  L  M  L  *  L  K  D  V  A  L  D  E  V  C  I  S  D  D  H  I  V  P  H  P  S  C  E  H  A  N  E  V  S  L  P  D  *  *  P  *  E  T  P  V  *  N  N  W  F  I  K  N  H  R  S  N  L  L  L  N  I  I  I  S  K  R  A  K  K  F  L  L  Y  I  V  Q  *  W  R  R  T  R  G  L  V  G  L  I  A  C  S  L  L  N  M  I  R  T  L  L  K  K  F  Q  V  Y  H  L  K  I  L  G  H  Q  M  I  A  P  E  V  T  I  *  T  P  L  A  V  R  S  S  P  I  T  P  F  W  M  T  R  I  L  Q  L  G  T  T  C  I  A  I  L  L  V  P  F  L  R  Q  M  M  I  L  V  F  L  I  V  I  M  R  I  K  V  V  P  S  S  Y  I  I  T  G  L  R  W  K  T  L  R  M  L  T  G  C  S   : E  V  V  I  Q  H  L  E  L  E  L  V  S  K  M  T  L  V  G  F  R  H  L  V  L  L  K  D  L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  V  F  S  S  T  S  K  L  M  D  L  I  L  G  I  F  R  M  A  F  L  T  Y  L  Q  I  T  V  I  Q  I  R  L  R  F  V  Q  P  Y  P  Q  L  N  L  K  K  A  V  S  *  L  F  L  L  R  T  P  V  R  Q  I  R  C  S  *  W  K  A  Y  L  I  L  L  F  R  W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q  D  I  W  T  R  R  Q  T  L  T  L  *  I  D  L  L  L  T  Y  S  S  T  G  L  Q  T  H  Q  *  W  L  I  L  W  L  W  S  H  L  P  R :   F  S  R  H  Y  S  A  H  Q  *  L  M  R  T  *  F  L  L  E  K  M  Q  P  N  Q  I  K  A  R  N  I  K  Q  A  S  I  Q  M  G  C  V  Y  F  N  L  C  R  M  D  S  P  T  C  M  C  M  *  V  S  A  M  D  T  Y  I  L  F  C  C  L  V  *  F  E  E  S  K  Q  Y  E  N  E  D  L  C  Q  I  A  Y  S  Y  S  C  V  C  V  *  E  L  S  R  I  S  N  E  K  L  F  H  V </first_frame>
            <second_frame>  Q  V  I  L  E  V  D  F  D  C  L  *  M  S  S  F  F  V  V  V  L  L  L  Y  E  Y  K  E  E  C  F  Q  L  M  N  F  L  I  L  F  F  A  V  K  K  K  R  V  T  L  E  N  G  C  L  L  K  V  R  R  V  L  S  L  *  T  D  F  V  C  *  K  M  K  E  K  K  *  I  W  K  L  N  F  S  *  G  E  D  F  Q  L  M  K  R  I  F  S  E  G  E  E  F  I  C  Q  I  H  *  *  P  *  K  E  Q  N  F  R  I  S  N  G  G  N  N  L  T  L  I  Q  T  M  M  I  S  I  *  R  N  K  F  C  V  L  F  L  I  Y  S  F  *  G  S  I  L  S  S  C  L  Q  L  K  F  C  N  *  C  Y  S  L  K  M  *  L  W  M  K  F  A  L  A  M  I  I  *  C  H  I  L  V  V  N  M  P  M  K  F  L  S  Q  T  D  S  R  K  K  P  R  C  E  I  I  G  L  L  R  T  I  G  A  I  F  S  *  I  *  *  S  A  K  G  Q  R  S  S  S  F  I  *  Y  N  D  G  E  G  L  E  G  W  *  A  *  L  R  V  P  F  *  T  *  *  G  L  C  *  R  S  F  K  F  I  I  *  K  Y  *  D  I  K  *  L  L  Q  K  *  Q  Y  R  L  H  *  R  *  G  P  A  Q  *  P  H  S  G  *  Q  E  F  C  S  *  G  Q  L  A  *  L  S  S  W  S  R  F  S  G  R  *  *  S  W  F  S  *  *  *  S  *  G  *  K  *  Y  R  A  L  I  L  *  L  A  *  D  G  K  L  *  G  C  *  Q  D  V  R  :  K  L  *  F  N  I  W  S  W  S  *  Y  R  R  *  P  W  L  V  F  V  I  W  C  Y  *  R  I  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R  Y  S  A  A  Q  A  S  *  W  I  *  F  W  V  F  S  G  W  L  F  L  L  I  F  R  L  Q  S  F  R  S  D  Y  G  L  S  N  P  I  H  N  *  I  *  K  K  L  S  R  D  S  F  C  *  G  L  L  C  D  K  S  D  A  V  D  G  K  L  T  *  S  F  F  S  G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  I  F  G  H  G  D  R  H  *  L  Y  R  S  I  Y  C  S  L  T  L  P  Q  A  F  K  L  I  S  D  G  *  F  F  G  F  G  V  T  F  H   : D  F  R  D  I  T  Q  P  T  N  D  *  *  E  L  D  F  C  W  R  K  C  S  R  T  R  *  R  H  E  I  L  N  R  L  L  Y  K  W  V  V  F  I  S  I  Y  V  A  W  T  R  L  H  V  C  A  C  K  Y  L  L  W  I  L  I  Y  S  F  V  V  *  C  N  S  K  N  L  N  S  M  R  M  R  I  Y  V  K  *  L  T  V  T  R  V  F  V  Y  E  N  Y  Q  E  S  Q  M  R  N  Y  F  M   </second_frame>
            <third_frame>   K  *  F  W  K  L  I  L  I  V  C  K  *  V  P  S  L  L  L  F  C  C  C  M  N  I  R  R  S  A  F  S  *  *  I  F  *  F  Y  F  L  L  *  K  K  K  E  *  L  W  K  M  D  V  Y  L  R  *  E  E  F  *  A  Y  E  L  I  L  F  V  E  K  *  K  R  R  N  K  F  G  N  *  I  L  V  K  E  K  I  F  S  L  *  N  G  F  L  V  K  E  R  N  L  F  V  K  Y  I  D  S  L  K  K  S  R  T  F  V  S  L  T  V  E  I  I  L  P  *  S  K  L  *  *  F  Q  F  K  E  T  N  S  V  F  Y  F  *  F  T  H  F  K  E  A  S  S  L  V  V  Y  S  *  N  S  V  T  D  A  I  A  *  R  C  S  F  G  *  S  L  H  *  R  *  S  Y  S  A  T  S  *  L  *  T  C  Q  *  S  F  S  P  R  L  I  A  V  R  N  P  G  V  K  *  L  V  Y  *  E  P  *  E  Q  S  S  L  K  Y  N  N  Q  Q  K  G  K  E  V  P  P  L  Y  S  T  M  M  E  K  D  S  R  A  G  R  L  D  C  V  F  P  S  K  H  D  K  D  S  V  E  E  V  S  S  L  S  S  E  N  T  R  T  S  N  D  C  S  R  S  N  N  I  D  S  I  S  G  E  V  Q  P  N  N  P  I  L  D  D  K  N  S  A  V  R  D  N  L  H  S  Y  P  L  G  P  V  S  Q  A  D  D  D  L  G  F  L  D  S  N  H  E  D  K  S  S  T  E  L  L  Y  Y  N  W  P  E  M  E  N  F  E  D  V  D  R  M  F  G :   S  C  D  S  T  F  G  V  G  A  S  I  E  D  D  L  G  W  F  S  S  S  G  V  I  E  G  S  G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T  G  I  Q  Q  H  K  Q  V  D  G  S  D  F  G  Y  F  Q  D  G  F  S  Y  L  S  S  D  Y  S  H  S  D  Q  T  T  V  C  P  T  L  S  T  I  K  S  K  K  S  C  L  V  T  L  S  A  K  D  S  C  A  T  N  Q  M  Q  L  M  E  S  L  P  D  P  S  F  Q  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G  Y  L  D  T  E  T  D  T  N  S  I  D  R  S  I  A  H  L  L  F  H  R  P  S  N  S  S  V  M  A  D  S  L  A  L  E  S  P  S  T  :  I  F  E  T  L  L  S  P  P  M  I  D  E  N  L  I  S  A  G  E  N  A  A  E  P  D  K  G  T  K  Y  *  T  G  F  Y  T  N  G  L  C  L  F  Q  F  M  S  H  G  L  A  Y  M  Y  V  H  V  S  I  C  Y  G  Y  L  Y  T  L  L  L  F  S  V  I  R  R  I  *  T  V  *  E  *  G  S  M  S  N  S  L  Q  L  L  V  C  L  C  M  R  I  I  K  N  L  K  *  E  I  I  S  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5949" stop="6376"/>
                    <exon start="6477" stop="6813"/>
                    <exon start="8875" stop="9480"/>
                    <exon start="10443" stop="10591"/>
                    <exon start="10870" stop="10999"/>
                    <exon start="11084" stop="11179"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1743</number_coding_nucleotides>
                  <number_encoded_amino_acids>581</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EQSSLKYNNQQKGKEVPPLYSTMMEKDSRAGRLDCVFPSKHDKDSVEEVSSLSSENTRTSNDCSRSNNIDSISGEVQPNNPILDDKNSAVRDNLHSYPLGPVSQADDDLGFLDSNHEDKSSTELLYYNWPEMENFEDVDRMFGSCDSTFGVGASIEDDLGWFSSSGVIEGSGGGLRSDLEFAFSTSSALENISGMQEASRSKETGNSINDSGTKDQLFSQTGSSMPSEDESAVLSHLSFTNGSSDSDFKIVPIKKINLHKINSKLQNQSEGKRKHVYVENGETFNYIDSLPEERNHPTAITGSQALTSTGIQQHKQVDGSDFGYFQDGFSYLSSDYSHSDQTTVCPTLSTIKSKKSCLVTLSAKDSCATNQMQLMESLPDPSFQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTGYLDTETDTNSIDRSIAHLLFHRPSNSSVMADSLALESPSTIFETLLSPPMIDENLISAGENAAEPDKGTKY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="6560" e_stop="6813"/>
            <exon e_start="8875" e_stop="9037"/>
            <exon e_start="9262" e_stop="9480"/>
            <exon e_start="10443" e_stop="10591"/>
            <exon e_start="10870" e_stop="10879"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.374" acc_prob="0.747" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="6560" e_stop="6813" e_length="254"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.989">
            <gDNA_intron_boundary i_start="6814" i_stop="8874" i_length="2061"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8875" e_stop="9037" e_length="163"/>
          </exon>
          <intron i_serial="2" don_prob="0.374" acc_prob="0.747">
            <gDNA_intron_boundary i_start="9038" i_stop="9261" i_length="224"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9262" e_stop="9480" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9481" i_stop="10442" i_length="962"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="10443" e_stop="10591" e_length="149"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.997">
            <gDNA_intron_boundary i_start="10592" i_stop="10869" i_length="278"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="10870" e_stop="10879" e_length="10"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="6560" stop="6813"/>
              <exon start="8875" stop="9037"/>
              <exon start="9262" stop="9480"/>
              <exon start="10443" stop="10591"/>
              <exon start="10870" stop="10879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U319644" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTGGAGGTGGATTGAGGTCAGATTTGGAGTTTGCCTTCTCAACATCCAGTGCACTTGAAAATATCTCTGGAATGCAGGAAGCTTCCAGGTCAAAGGAAACAGGCAATTCAATTAATGATTCTGGCACTAAAGATCAACTCTTCAGTCAGACTGGCAGTTCAATGCCATCAGAGGATGAATCAGCCGTTCTGAGTCATCTATCTTTTACAAATGGTTCAAGTGATTCAGATTTCAAGATAGTGCCCATAAAGAAG : ATTAATCTTCACAAAATTAACTCTAAGCTCCAGAATCAATCTGAGGGAAAAAGAAAACATGTTTACGTGGAAAATGGGGAGACATTCAACTATATTGATAGCCTTCCAGAAGAGAGAAACCATCCTACTGCAATCACTGGATCTCAGGCTCTCACATCCACAG : GTGGCTGGTATAGGAACAAATGAAAATATGGTGGACAAGCTACTTCAACGTTCTGTAATTAAGCATGAAAACAACAGGGATCTTGAAAGTGTCAGCACGGGAATTCCAGCAGAAGTAGGTTCCTCTATTGTAAAGGAGAGCTCTTGCACAAGTTCTGGGTTGAATGAAATTTCTGAGGAGGCAGATAGTTTTCATCAGCTTGAACATGTCATGGAACGG : TTGGATGTAAGAACAAAGCTACGGATAAGGGATAGCTTGTATCGGTTGGCTCAGAGTGCTGAACAAAGGCTTAGACATGCTAATCTCAATAATGGATCTGGTGATGATAGTCACACAAGCAGAGCATTTGATGATGATGGAGCATACAG : ATGCACAGGA</gDNA_template>
            <first_frame> L  E  V  D  *  G  Q  I  W  S  L  P  S  Q  H  P  V  H  L  K  I  S  L  E  C  R  K  L  P  G  Q  R  K  Q  A  I  Q  L  M  I  L  A  L  K  I  N  S  S  V  R  L  A  V  Q  C  H  Q  R  M  N  Q  P  F  *  V  I  Y  L  L  Q  M  V  Q  V  I  Q  I  S  R  *  C  P  *  R  R :   L  I  F  T  K  L  T  L  S  S  R  I  N  L  R  E  K  E  N  M  F  T  W  K  M  G  R  H  S  T  I  L  I  A  F  Q  K  R  E  T  I  L  L  Q  S  L  D  L  R  L  S  H  P  Q  :  V  A  G  I  G  T  N  E  N  M  V  D  K  L  L  Q  R  S  V  I  K  H  E  N  N  R  D  L  E  S  V  S  T  G  I  P  A  E  V  G  S  S  I  V  K  E  S  S  C  T  S  S  G  L  N  E  I  S  E  E  A  D  S  F  H  Q  L  E  H  V  M  E  R  :  L  D  V  R  T  K  L  R  I  R  D  S  L  Y  R  L  A  Q  S  A  E  Q  R  L  R  H  A  N  L  N  N  G  S  G  D  D  S  H  T  S  R  A  F  D  D  D  G  A  Y  R :   C  T  G </first_frame>
            <second_frame>  W  R  W  I  E  V  R  F  G  V  C  L  L  N  I  Q  C  T  *  K  Y  L  W  N  A  G  S  F  Q  V  K  G  N  R  Q  F  N  *  *  F  W  H  *  R  S  T  L  Q  S  D  W  Q  F  N  A  I  R  G  *  I  S  R  S  E  S  S  I  F  Y  K  W  F  K  *  F  R  F  Q  D  S  A  H  K  E   : D  *  S  S  Q  N  *  L  *  A  P  E  S  I  *  G  K  K  K  T  C  L  R  G  K  W  G  D  I  Q  L  Y  *  *  P  S  R  R  E  K  P  S  Y  C  N  H  W  I  S  G  S  H  I  H  R :   W  L  V  *  E  Q  M  K  I  W  W  T  S  Y  F  N  V  L  *  L  S  M  K  T  T  G  I  L  K  V  S  A  R  E  F  Q  Q  K  *  V  P  L  L  *  R  R  A  L  A  Q  V  L  G  *  M  K  F  L  R  R  Q  I  V  F  I  S  L  N  M  S  W  N  G :   W  M  *  E  Q  S  Y  G  *  G  I  A  C  I  G  W  L  R  V  L  N  K  G  L  D  M  L  I  S  I  M  D  L  V  M  I  V  T  Q  A  E  H  L  M  M  M  E  H  T   : D  A  Q   </second_frame>
            <third_frame>   G  G  G  L  R  S  D  L  E  F  A  F  S  T  S  S  A  L  E  N  I  S  G  M  Q  E  A  S  R  S  K  E  T  G  N  S  I  N  D  S  G  T  K  D  Q  L  F  S  Q  T  G  S  S  M  P  S  E  D  E  S  A  V  L  S  H  L  S  F  T  N  G  S  S  D  S  D  F  K  I  V  P  I  K  K  :  I  N  L  H  K  I  N  S  K  L  Q  N  Q  S  E  G  K  R  K  H  V  Y  V  E  N  G  E  T  F  N  Y  I  D  S  L  P  E  E  R  N  H  P  T  A  I  T  G  S  Q  A  L  T  S  T   : G  G  W  Y  R  N  K  *  K  Y  G  G  Q  A  T  S  T  F  C  N  *  A  *  K  Q  Q  G  S  *  K  C  Q  H  G  N  S  S  R  S  R  F  L  Y  C  K  G  E  L  L  H  K  F  W  V  E  *  N  F  *  G  G  R  *  F  S  S  A  *  T  C  H  G  T   : V  G  C  K  N  K  A  T  D  K  G  *  L  V  S  V  G  S  E  C  *  T  K  A  *  T  C  *  S  Q  *  W  I  W  *  *  *  S  H  K  Q  S  I  *  *  *  W  S  I  Q  :  M  H  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="6809" stop="6813"/>
                    <exon start="8875" stop="9037"/>
                    <exon start="9262" stop="9480"/>
                    <exon start="10443" stop="10591"/>
                    <exon start="10870" stop="10879"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRLIFTKLTLSSRINLREKENMFTWKMGRHSTILIAFQKRETILLQSLDLRLSHPQVAGIGTNENMVDKLLQRSVIKHENNRDLESVSTGIPAEVGSSIVKESSCTSSGLNEISEEADSFHQLEHVMERLDVRTKLRIRDSLYRLAQSAEQRLRHANLNNGSGDDSHTSRAFDDDGAYRCTG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="25318" PGL_stop="22126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="25318" e_stop="25159"/>
            <exon e_start="25042" e_stop="24929"/>
            <exon e_start="24030" e_stop="23729"/>
            <exon e_start="23145" e_stop="22901"/>
            <exon e_start="22811" e_stop="22126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.994" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.982" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="25318" e_stop="25159" e_length="160"/>
          </exon>
          <intron i_serial="1" don_prob="0.994" acc_prob="0.974">
            <gDNA_intron_boundary i_start="25158" i_stop="25043" i_length="116"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="25042" e_stop="24929" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.996">
            <gDNA_intron_boundary i_start="24928" i_stop="24031" i_length="898"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="24030" e_stop="23729" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.988">
            <gDNA_intron_boundary i_start="23728" i_stop="23146" i_length="583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="23145" e_stop="22901" e_length="245"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.982">
            <gDNA_intron_boundary i_start="22900" i_stop="22812" i_length="89"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22811" e_stop="22126" e_length="686"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25318" stop="25159"/>
              <exon start="25042" stop="24929"/>
              <exon start="24030" stop="23729"/>
              <exon start="23145" stop="22901"/>
              <exon start="22811" stop="22145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24019" stop="23729"/>
              <exon start="23145" stop="22901"/>
              <exon start="22811" stop="22805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U333580" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22342" stop="22126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U312458" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAACTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAG : GTTAACAACAAAGGATTCTCTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCTCTGCT : ATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTCTCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAGTCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGG : AGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAGAAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTGTCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTGACCAGAAATTTG : GAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATCTTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGGGGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTGAGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACTTCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACAATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTACTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATTTTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATACAGTCCGCTTCTGTAT</gDNA_template>
            <first_frame> I  Y  L  S  S  I  I  S  S  I  F  F  P  P  F  I  H  S  *  T  S  T  I  F  L  H  Q  H  I  N  C  T  A  V  A  V  I  L  L  K  N  N  G  C  S  L  S  S  Q  H  F  S  *   : G  *  Q  Q  R  I  L  *  I  L  W  F  E  N  L  I  S  C  S  I  W  E  E  N  *  *  *  F  V  L  C  C  W  L  T  N  L  C   : Y  W  R  K  E  E  Q  E  D  S  N  *  G  K  V  E  S  G  Y  Q  W  I  W  K  N  W  K  E  L  L  E  V  L  A  W  *  K  R  L  T  S  *  C  H  C  H  Q  *  H  W  W  C  Q  A  S  L  S  P  S  Q  I  *  L  H  P  W  H  L  *  C  *  R  Q  A  G  W  H  *  W  H  L  C  R  W  K  S  H  P  S  R  L  Q  P  *  P  C  E  P  P  M  G  :  R  T  W  S  *  L  S  H  R  R  Y  R  S  F  C  R  Q  R  R  C  R  *  T  H  P  G  R  S  Q  E  G  A  H  H  R  P  R  K  R  *  H  P  Y  L  C  C  W  C  Q  C  *  T  L  Q  P  *  *  T  Y  H  Q  Q  C  L  L  Y  H  Q  L  P  C  S  F  R  Q  G  S  *  P  E  I  W :   N  Y  Q  G  N  N  D  N  Y  S  L  L  H  R  *  P  K  A  S  *  C  K  P  Q  G  S  *  T  C  T  S  C  S  T  E  H  S  S  N  L  N  W  C  C  *  G  C  G  S  C  S  P  K  P  Q  G  E  T  Q  R  H  C  P  P  C  S  H  P  *  R  L  G  C  G  P  C  C  A  S  H  Q  E  D  I  C  *  G  S  E  C  C  I  Q  R  G  R  *  *  G  T  Q  W  H  S  I  C  L  *  *  T  T  R  V  S  *  L  P  V  Q  *  R  V  I  N  C  *  F  F  T  H  H  G  H  G  R  *  H  G  *  G  Y  C  L  V  *  Q  *  M  G  L  L  T  E  G  C  *  S  C  *  H  C  C  K  P  V  E  M  K  H  E  N  K  I  K  Q  Y  Y  *  I  V  A  *  F  I  F  F  *  P  C  L  *  I  L  I  P  F  *  K  L  *  *  E  L  *  Q  F  S  T  L  *  N  L  N  S  I  K  V  P  F  L  V  F  I  Q  S  A  S  V  </first_frame>
            <second_frame>  S  I  Y  H  P  *  S  H  P  F  S  S  L  H  S  F  I  H  K  L  P  Q  F  F  F  I  N  T  *  T  V  L  L  L  L  *  F  S  *  R  T  M  A  A  L  S  V  A  N  T  S  L  K  :  V  N  N  K  G  F  S  E  F  S  G  L  R  T  S  S  A  V  P  F  G  R  K  T  N  D  D  L  F  S  V  A  G  L  Q  T  S  A  :  I  G  G  R  K  N  K  R  I  V  T  E  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  I  A  I  N  D  T  G  G  V  K  Q  A  S  H  L  L  K  Y  D  S  T  L  G  I  F  D  A  D  V  K  P  V  G  T  D  G  I  S  V  D  G  K  V  I  Q  V  V  S  N  R  D  P  V  N  L  P  W  G :   E  L  G  V  D  L  V  I  E  G  T  G  V  F  V  D  R  E  G  A  G  K  H  I  Q  A  G  A  K  K  V  L  I  T  A  P  G  K  G  D  I  P  T  Y  V  V  G  V  N  A  E  L  Y  S  H  D  E  P  I  I  S  N  A  S  C  T  T  N  C  L  A  P  F  V  K  V  L  D  Q  K  F   : G  I  I  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  A  L  V  L  P  S  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  V  Q  V  T  K  K  T  F  A  E  E  V  N  A  A  F  R  E  A  A  D  K  E  L  N  G  I  L  S  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  S  T  V  D  S  S  L  T  M  V  M  G  D  D  M  V  K  V  I  A  W  Y  D  N  E  W  G  Y  S  Q  R  V  V  D  L  A  D  I  V  A  N  Q  W  K  *  N  M  K  I  K  *  S  S  T  T  K  *  W  L  N  L  Y  F  F  N  L  A  C  R  F  L  F  L  F  E  N  C  N  E  N  Y  N  N  F  P  P  C  E  I  S  I  Q  *  K  S  P  F  L  S  L  Y  S  P  L  L  Y </second_frame>
            <third_frame>   L  S  I  I  H  N  L  I  H  F  L  P  S  I  H  S  F  I  N  F  H  N  F  S  S  S  T  H  K  L  Y  C  C  C  C  N  S  L  K  E  Q  W  L  L  S  Q  *  P  T  L  L  L  R :   L  T  T  K  D  S  L  N  S  L  V  *  E  P  H  Q  L  F  H  L  G  G  K  L  M  M  I  C  S  L  L  L  A  Y  K  P  L  L :   L  E  E  G  R  T  R  G  *  *  L  R  Q  S  *  K  W  L  S  M  D  L  E  E  L  E  G  T  S  *  G  A  G  M  V  E  K  T  H  L  L  M  S  L  P  S  M  T  L  V  V  S  S  K  P  L  T  F  S  N  M  T  P  P  L  A  S  L  M  L  T  S  S  R  L  A  L  M  A  S  L  S  M  E  K  S  S  K  S  S  P  T  V  T  L  *  T  S  H  G   : E  N  L  E  L  T  *  S  *  K  V  P  E  F  L  *  T  E  K  V  P  V  N  T  S  R  P  E  P  R  R  C  S  S  P  P  P  E  K  V  T  S  L  L  M  L  L  V  S  M  L  N  F  T  A  M  M  N  L  S  S  A  M  P  L  V  P  P  T  A  L  L  L  S  S  R  F  L  T  R  N  L  :  E  L  S  R  E  Q  *  Q  L  L  T  L  T  P  V  T  K  G  F  L  M  Q  A  T  G  I  L  D  V  H  E  L  Q  H  *  T  *  F  Q  P  Q  L  V  L  L  R  L  W  L  L  F  S  Q  A  S  R  G  N  S  T  A  L  P  S  V  F  P  P  L  T  S  R  L  W  T  L  L  C  K  S  P  R  R  H  L  L  R  K  *  M  L  H  S  E  R  P  L  I  R  N  S  M  A  F  Y  L  S  V  M  N  H  S  C  Q  L  T  S  G  A  V  T  C  H  Q  L  L  I  L  H  S  P  W  S  W  E  M  T  W  L  R  L  L  L  G  M  T  M  N  G  V  T  H  R  G  L  L  I  L  L  T  L  L  Q  T  S  G  N  E  T  *  K  *  N  K  A  V  L  L  N  S  G  L  I  Y  I  F  L  T  L  L  V  D  S  Y  S  F  L  K  I  V  M  R  T  I  T  I  F  H  L  V  K  S  Q  F  N  K  S  P  L  S  C  L  Y  T  V  R  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25200" stop="25159"/>
                    <exon start="25042" stop="24929"/>
                    <exon start="24030" stop="23729"/>
                    <exon start="23145" stop="22901"/>
                    <exon start="22811" stop="22309"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1203</number_coding_nucleotides>
                  <number_encoded_amino_acids>401</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RTMAALSVANTSLKVNNKGFSEFSGLRTSSAVPFGRKTNDDLFSVAGLQTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSNRDPVNLPWGELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVTKKTFAEEVNAAFREAADKELNGILSVCDEPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQWK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="30442" PGL_stop="28058"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30442" e_stop="30427"/>
            <exon e_start="30322" e_stop="30263"/>
            <exon e_start="29823" e_stop="29578"/>
            <exon e_start="29344" e_stop="29234"/>
            <exon e_start="29035" e_stop="28859"/>
            <exon e_start="28750" e_stop="28058"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.880" e_score="0.983"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.850" e_score="1.000"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30442" e_stop="30427" e_length="16"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="1.000">
            <gDNA_intron_boundary i_start="30426" i_stop="30323" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="30322" e_stop="30263" e_length="60"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.880">
            <gDNA_intron_boundary i_start="30262" i_stop="29824" i_length="439"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29823" e_stop="29578" e_length="246"/>
          </exon>
          <intron i_serial="3" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="29577" i_stop="29345" i_length="233"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29344" e_stop="29234" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.969">
            <gDNA_intron_boundary i_start="29233" i_stop="29036" i_length="198"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="29035" e_stop="28859" e_length="177"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.850">
            <gDNA_intron_boundary i_start="28858" i_stop="28751" i_length="108"/>
          </intron>
          <exon e_serial="6" e_score="0.974">
            <gDNA_exon_boundary e_start="28750" e_stop="28058" e_length="693"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30442" stop="30427"/>
              <exon start="30322" stop="30263"/>
              <exon start="29823" stop="29578"/>
              <exon start="29344" stop="29234"/>
              <exon start="29035" stop="28859"/>
              <exon start="28750" stop="28058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U326065" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTGCTAGTTGGCTG : GCATGGGCTCAACTAGAGGCTCAGTTAGAGAATAACCGTTCCGCTAGGCAGCTGTTTGAG : AAAGCAGTTCAAGCCAGTCCGAAAAATAGGTTCGCGTGGCATGTATGGGGAGTTTTTGAAGCTAATCTAGGAAATATTGATCAAGGAAGGAAACTTCTAACAATAGGGCACATGGTGAATCCTAGAGATCCTGTTCTTCTCCAATCACTTGGTTTGATAGAATACAAGAACTCCAGTGCAAACCTTGCACGAGTTCTATTCCGAAGAGCGTCTCAACTAGATCCAAGGCATCAACCAGTTTGGATT : GCTTGGGGTTGGATGGAGTGGAAAGAAGGAAACATTTCCACAGCTCGAGAACTATACCAGAAGGCTCTATCGATCAACTCAACAACTGAAAGTGCTGCGCGTTGTCTTCAG : GCTTGGGGTGTTTTGGAGCAAAGAGCTGGAAATCTATCAGCTGCTCGAAGACTATTTAGATCGTCTCTGAACATAAACTCTCAGAGCTATATAACATGGATGACATGGGCAAATTTAGAGGAAGATCAAGGTAACTCTATCCGTGCAGAGGAAATTCGTAACCTCTACTTTCAACAG : CGTACTGAAGTTGTTGATGATGAGTCGTGGATTATGGGCTTCTTAGACGTCATTGACCCAGCGATTGACAGCATAAAGAGGCTCTTGAATCTAGATCAGAACTCTTACTACAAGGTAAAAGAGTCTGCTTCTAATACTACTGCTGGAGACGACGTTGAGGGGAGCACAGAAGAATCAGCTTCTCCCTCCTCGGCTAACGTCAATGACAATAACATAGATACAGGAAGTGGCTTTGATTTAGATGATTTTATCAGTGTAATGCTGTCTTTAGACCCTTCAAAGCTGGAAGTTCAGCTTACAACATCTCTTAAGGACCCTCCGAAAATCGCCAGAACTACTAATGGGGTGTGGCGACCATCGACAAAGACTAGTAGAACATCAACAACACTTTGATTTTACAACAACAACGACATACTTAATGTAACCTCACTAGTGTGGTCTGGGAGGGCGGAGGACGAAAGGTGATGTGTTGCAGCCTTACCTTTACCTCGTGAAGGTAGAGAGACTGTTTCTGACTCAGCTCAATATGAAGTTTATTGTTCTTTAGTGGGAATTGCAACATTCATTAATGTTGTCAAATGAAGAAGTCTTGGTCCACATTTTGTAAATTACTTAGGAATATTGAGAAGAATTGTATAAATTTGATTGTGAAAGAGATACAAATCTACACATATTATGAGTAAACATTGTATA</gDNA_template>
            <first_frame> L  C  *  L  A   : G  M  G  S  T  R  G  S  V  R  E  *  P  F  R  *  A  A  V  *   : E  S  S  S  S  Q  S  E  K  *  V  R  V  A  C  M  G  S  F  *  S  *  S  R  K  Y  *  S  R  K  E  T  S  N  N  R  A  H  G  E  S  *  R  S  C  S  S  P  I  T  W  F  D  R  I  Q  E  L  Q  C  K  P  C  T  S  S  I  P  K  S  V  S  T  R  S  K  A  S  T  S  L  D   : C  L  G  L  D  G  V  E  R  R  K  H  F  H  S  S  R  T  I  P  E  G  S  I  D  Q  L  N  N  *  K  C  C  A  L  S  S   : G  L  G  C  F  G  A  K  S  W  K  S  I  S  C  S  K  T  I  *  I  V  S  E  H  K  L  S  E  L  Y  N  M  D  D  M  G  K  F  R  G  R  S  R  *  L  Y  P  C  R  G  N  S  *  P  L  L  S  T   : A  Y  *  S  C  *  *  *  V  V  D  Y  G  L  L  R  R  H  *  P  S  D  *  Q  H  K  E  A  L  E  S  R  S  E  L  L  L  Q  G  K  R  V  C  F  *  Y  Y  C  W  R  R  R  *  G  E  H  R  R  I  S  F  S  L  L  G  *  R  Q  *  Q  *  H  R  Y  R  K  W  L  *  F  R  *  F  Y  Q  C  N  A  V  F  R  P  F  K  A  G  S  S  A  Y  N  I  S  *  G  P  S  E  N  R  Q  N  Y  *  W  G  V  A  T  I  D  K  D  *  *  N  I  N  N  T  L  I  L  Q  Q  Q  R  H  T  *  C  N  L  T  S  V  V  W  E  G  G  G  R  K  V  M  C  C  S  L  T  F  T  S  *  R  *  R  D  C  F  *  L  S  S  I  *  S  L  L  F  F  S  G  N  C  N  I  H  *  C  C  Q  M  K  K  S  W  S  T  F  C  K  L  L  R  N  I  E  K  N  C  I  N  L  I  V  K  E  I  Q  I  Y  T  Y  Y  E  *  T  L  Y  </first_frame>
            <second_frame>  C  A  S  W  L  :  A  W  A  Q  L  E  A  Q  L  E  N  N  R  S  A  R  Q  L  F  E  :  K  A  V  Q  A  S  P  K  N  R  F  A  W  H  V  W  G  V  F  E  A  N  L  G  N  I  D  Q  G  R  K  L  L  T  I  G  H  M  V  N  P  R  D  P  V  L  L  Q  S  L  G  L  I  E  Y  K  N  S  S  A  N  L  A  R  V  L  F  R  R  A  S  Q  L  D  P  R  H  Q  P  V  W  I  :  A  W  G  W  M  E  W  K  E  G  N  I  S  T  A  R  E  L  Y  Q  K  A  L  S  I  N  S  T  T  E  S  A  A  R  C  L  Q  :  A  W  G  V  L  E  Q  R  A  G  N  L  S  A  A  R  R  L  F  R  S  S  L  N  I  N  S  Q  S  Y  I  T  W  M  T  W  A  N  L  E  E  D  Q  G  N  S  I  R  A  E  E  I  R  N  L  Y  F  Q  Q  :  R  T  E  V  V  D  D  E  S  W  I  M  G  F  L  D  V  I  D  P  A  I  D  S  I  K  R  L  L  N  L  D  Q  N  S  Y  Y  K  V  K  E  S  A  S  N  T  T  A  G  D  D  V  E  G  S  T  E  E  S  A  S  P  S  S  A  N  V  N  D  N  N  I  D  T  G  S  G  F  D  L  D  D  F  I  S  V  M  L  S  L  D  P  S  K  L  E  V  Q  L  T  T  S  L  K  D  P  P  K  I  A  R  T  T  N  G  V  W  R  P  S  T  K  T  S  R  T  S  T  T  L  *  F  Y  N  N  N  D  I  L  N  V  T  S  L  V  W  S  G  R  A  E  D  E  R  *  C  V  A  A  L  P  L  P  R  E  G  R  E  T  V  S  D  S  A  Q  Y  E  V  Y  C  S  L  V  G  I  A  T  F  I  N  V  V  K  *  R  S  L  G  P  H  F  V  N  Y  L  G  I  L  R  R  I  V  *  I  *  L  *  K  R  Y  K  S  T  H  I  M  S  K  H  C  I </second_frame>
            <third_frame>   V  L  V  G  W :   H  G  L  N  *  R  L  S  *  R  I  T  V  P  L  G  S  C  L  R :   K  Q  F  K  P  V  R  K  I  G  S  R  G  M  Y  G  E  F  L  K  L  I  *  E  I  L  I  K  E  G  N  F  *  Q  *  G  T  W  *  I  L  E  I  L  F  F  S  N  H  L  V  *  *  N  T  R  T  P  V  Q  T  L  H  E  F  Y  S  E  E  R  L  N  *  I  Q  G  I  N  Q  F  G  L :   L  G  V  G  W  S  G  K  K  E  T  F  P  Q  L  E  N  Y  T  R  R  L  Y  R  S  T  Q  Q  L  K  V  L  R  V  V  F  R :   L  G  V  F  W  S  K  E  L  E  I  Y  Q  L  L  E  D  Y  L  D  R  L  *  T  *  T  L  R  A  I  *  H  G  *  H  G  Q  I  *  R  K  I  K  V  T  L  S  V  Q  R  K  F  V  T  S  T  F  N  S :   V  L  K  L  L  M  M  S  R  G  L  W  A  S  *  T  S  L  T  Q  R  L  T  A  *  R  G  S  *  I  *  I  R  T  L  T  T  R  *  K  S  L  L  L  I  L  L  L  E  T  T  L  R  G  A  Q  K  N  Q  L  L  P  P  R  L  T  S  M  T  I  T  *  I  Q  E  V  A  L  I  *  M  I  L  S  V  *  C  C  L  *  T  L  Q  S  W  K  F  S  L  Q  H  L  L  R  T  L  R  K  S  P  E  L  L  M  G  C  G  D  H  R  Q  R  L  V  E  H  Q  Q  H  F  D  F  T  T  T  T  T  Y  L  M  *  P  H  *  C  G  L  G  G  R  R  T  K  G  D  V  L  Q  P  Y  L  Y  L  V  K  V  E  R  L  F  L  T  Q  L  N  M  K  F  I  V  L  *  W  E  L  Q  H  S  L  M  L  S  N  E  E  V  L  V  H  I  L  *  I  T  *  E  Y  *  E  E  L  Y  K  F  D  C  E  R  D  T  N  L  H  I  L  *  V  N  I  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30441" stop="30427"/>
                    <exon start="30322" stop="30263"/>
                    <exon start="29823" stop="29578"/>
                    <exon start="29344" stop="29234"/>
                    <exon start="29035" stop="28859"/>
                    <exon start="28750" stop="28358"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>999</number_coding_nucleotides>
                  <number_encoded_amino_acids>333</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CASWLAWAQLEAQLENNRSARQLFEKAVQASPKNRFAWHVWGVFEANLGNIDQGRKLLTIGHMVNPRDPVLLQSLGLIEYKNSSANLARVLFRRASQLDPRHQPVWIAWGWMEWKEGNISTARELYQKALSINSTTESAARCLQAWGVLEQRAGNLSAARRLFRSSLNINSQSYITWMTWANLEEDQGNSIRAEEIRNLYFQQRTEVVDDESWIMGFLDVIDPAIDSIKRLLNLDQNSYYKVKESASNTTAGDDVEGSTEESASPSSANVNDNNIDTGSGFDLDDFISVMLSLDPSKLEVQLTTSLKDPPKIARTTNGVWRPSTKTSRTSTTL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="33636" PGL_stop="31698"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33636" e_stop="33596"/>
            <exon e_start="32429" e_stop="31698"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.808" acc_prob="0.989" e_score="0.878"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.878">
            <gDNA_exon_boundary e_start="33636" e_stop="33596" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.808" acc_prob="0.989">
            <gDNA_intron_boundary i_start="33595" i_stop="32430" i_length="1166"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="32429" e_stop="31698" e_length="732"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33636" stop="33596"/>
              <exon start="32429" stop="31698"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343303" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATCAGTGGATCTCTGGTTTTATTTTGTTTTACCTTCAATA : AGTAACAGGATACAGAGGGGATAATCTTTTCTATGAGGAAGTGCAAGTCTTGATTTTTTTTCCATATAAGCCTTGCTTCTTAGAATCTGTTGAACTATCGAAAAGTTTGAGCTATTCGACACCAAATTTCTCTTAGTCTTTGAAGTTTATCGGCTTATTCTTTCATCTCCAGATAGAAACCGATATTCAATCACCATTGTATTCCATTAAGTATATGACAGTGTTACCAAAGTGTAGATACAAGTAAAGCAATGAGTCAGTTTTCGTTTACTTCTTCTTCGAGCTCTAATTTCACTCTCTTCTATCATTCTCAGAATCATAATCCTTCAAAGTTTCATGTTTCTGCTCCCTTTAGAACATCCCAACCATCGCCTTCACATCCTATTTTACCTCCCTTATGTTCCCGTGATCCGTCTTCCTCATCACCACTTCTTGAAGAAAAGCCAGAAACATCACAATCTTCTTCTAAGTTTGATCCTCAAGATACACTAAGTTACAATGATGAAGTTTCTGAGGAGATCAGCACTACAAAGAAGTCCTTGGAAGAGTTACTTGTTGTTCGTAGGCCGGTGAAGGAGTCTTCCGTGGAAAATGATGATGAAAAAGGGGAAGCAGTGAGTAACTTTGAGGATTCTCAAGAGAGAAATGATATTCTGGAAGAACAACCATCTTCCTCATCATTTCCACTTGATGCTGGCCTTAAGAAATTTGCAAAAAAAGTGCCAATTTTTG</gDNA_template>
            <first_frame> N  Q  W  I  S  G  F  I  L  F  Y  L  Q  * :   V  T  G  Y  R  G  D  N  L  F  Y  E  E  V  Q  V  L  I  F  F  P  Y  K  P  C  F  L  E  S  V  E  L  S  K  S  L  S  Y  S  T  P  N  F  S  *  S  L  K  F  I  G  L  F  F  H  L  Q  I  E  T  D  I  Q  S  P  L  Y  S  I  K  Y  M  T  V  L  P  K  C  R  Y  K  *  S  N  E  S  V  F  V  Y  F  F  F  E  L  *  F  H  S  L  L  S  F  S  E  S  *  S  F  K  V  S  C  F  C  S  L  *  N  I  P  T  I  A  F  T  S  Y  F  T  S  L  M  F  P  *  S  V  F  L  I  T  T  S  *  R  K  A  R  N  I  T  I  F  F  *  V  *  S  S  R  Y  T  K  L  Q  *  *  S  F  *  G  D  Q  H  Y  K  E  V  L  G  R  V  T  C  C  S  *  A  G  E  G  V  F  R  G  K  *  *  *  K  R  G  S  S  E  *  L  *  G  F  S  R  E  K  *  Y  S  G  R  T  T  I  F  L  I  I  S  T  *  C  W  P  *  E  I  C  K  K  S  A  N  F   </first_frame>
            <second_frame>  I  S  G  S  L  V  L  F  C  F  T  F  N   : K  *  Q  D  T  E  G  I  I  F  S  M  R  K  C  K  S  *  F  F  F  H  I  S  L  A  S  *  N  L  L  N  Y  R  K  V  *  A  I  R  H  Q  I  S  L  S  L  *  S  L  S  A  Y  S  F  I  S  R  *  K  P  I  F  N  H  H  C  I  P  L  S  I  *  Q  C  Y  Q  S  V  D  T  S  K  A  M  S  Q  F  S  F  T  S  S  S  S  S  N  F  T  L  F  Y  H  S  Q  N  H  N  P  S  K  F  H  V  S  A  P  F  R  T  S  Q  P  S  P  S  H  P  I  L  P  P  L  C  S  R  D  P  S  S  S  S  P  L  L  E  E  K  P  E  T  S  Q  S  S  S  K  F  D  P  Q  D  T  L  S  Y  N  D  E  V  S  E  E  I  S  T  T  K  K  S  L  E  E  L  L  V  V  R  R  P  V  K  E  S  S  V  E  N  D  D  E  K  G  E  A  V  S  N  F  E  D  S  Q  E  R  N  D  I  L  E  E  Q  P  S  S  S  S  F  P  L  D  A  G  L  K  K  F  A  K  K  V  P  I  F  </second_frame>
            <third_frame>   S  V  D  L  W  F  Y  F  V  L  P  S  I  :  S  N  R  I  Q  R  G  *  S  F  L  *  G  S  A  S  L  D  F  F  S  I  *  A  L  L  L  R  I  C  *  T  I  E  K  F  E  L  F  D  T  K  F  L  L  V  F  E  V  Y  R  L  I  L  S  S  P  D  R  N  R  Y  S  I  T  I  V  F  H  *  V  Y  D  S  V  T  K  V  *  I  Q  V  K  Q  *  V  S  F  R  L  L  L  L  R  A  L  I  S  L  S  S  I  I  L  R  I  I  I  L  Q  S  F  M  F  L  L  P  L  E  H  P  N  H  R  L  H  I  L  F  Y  L  P  Y  V  P  V  I  R  L  P  H  H  H  F  L  K  K  S  Q  K  H  H  N  L  L  L  S  L  I  L  K  I  H  *  V  T  M  M  K  F  L  R  R  S  A  L  Q  R  S  P  W  K  S  Y  L  L  F  V  G  R  *  R  S  L  P  W  K  M  M  M  K  K  G  K  Q  *  V  T  L  R  I  L  K  R  E  M  I  F  W  K  N  N  H  L  P  H  H  F  H  L  M  L  A  L  R  N  L  Q  K  K  C  Q  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32211" stop="31699"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QCYQSVDTSKAMSQFSFTSSSSSNFTLFYHSQNHNPSKFHVSAPFRTSQPSPSHPILPPLCSRDPSSSSPLLEEKPETSQSSSKFDPQDTLSYNDEVSEEISTTKKSLEELLVVRRPVKESSVENDDEKGEAVSNFEDSQERNDILEEQPSSSSFPLDAGLKKFAKKVPIF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="38437" PGL_stop="40664"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="38437" e_stop="38479"/>
            <exon e_start="39521" e_stop="40664"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.778" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="38437" e_stop="38479" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.778" acc_prob="0.999">
            <gDNA_intron_boundary i_start="38480" i_stop="39520" i_length="1041"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39521" e_stop="40664" e_length="1144"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38437" stop="38479"/>
              <exon start="39521" stop="40664"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U322350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTAATTAAAATAATTACCTCGCCTTCATCAGATCTGGTTGTT : GGAAATGTCATTCTTAAAGGATAGTTTCATTGATTCTGAAGCCCATTTTGTGGTGCTAATTGTACAGAGCTCATCAACATTTTCAGGTTTGGAGTTGAAATTTGAAACATAGCGTATCATATTTTCAAGCCTTTGATGACTCAGACTGAGACCTCATTTTAGTAACTTTAACGAGAGGTTTTGTTTGACTTATTCGCGTGAAATGGCAGAGCTTTTTGGATATACAGCATGCAGACAATTATTGCAAATGTTCATTTCAATTATATTCTTCCATGTTTCCGAGTACATTCTGGCACTTGTCTTTCATGGGAAGTCGAATGTATCTTTTAAGTCGCTTTTGATAAGCAAACATTATGTACTAGCAATGTTTTGCTCCTTGATAGAATACCTTATTGAAATCTATTTCTTTCCCGGCTTAAAGGAATATTGGTGGATAAGTAATTTTGGCCTCGCAATGGTTGTCCTCGGAGAAATCATAAGGAAGTTGGCAATTGTGACAGCAGGCCAAGCCTTCACTCATCTAATAAAGGTTTATCATGAGGAAAATCATCAGTTGGTTACGAATGGGATCTATAGATTTGTCCGGCATCCCGGTTACTGTGGTTTCTTCATCTGGTCTGTTGGTACACAAATAATGCTATGTAATCCAATATCAACCATTGCATTCACAGTTGTTGTGTGGAAATTCTTCTCGGGAAGGATACCTTACGAGGAGTTTTTCCTCAAGCAGTTCTTTGGTTCTGACTACGAAGATTATATGAGAAAAGTTCCTTCTGGTATTCCACTTGTGAGGTGATTATATCCTCTTCAGTGCTCTATATATTCATGCCTAACGTCATCTGCTCATCGGTGCTGAGATAACACTGTTTATGAATTTTATCTTCTTAGACACTCTTTACAGTTTTCATAACATGAAGTTCGCCAGAAAAAGGTTCCTCCTAGATATAACTTCTGAGGTGATGCTTCTATTAACCCTTGTATAGCGCGTTTATCTTATTTGTATCATCATGTTTTCGTCGTATCATGTCTTTGTTAAGACTTAGGTAAACTGTTCTTGTGGGGAGCTGTAAGTTATAACTGTATTTGTATTTATGGCTTGATGGGACAGTGTTTTTATCATACTCTTAAGGAGAAGAAAGGCTTT</gDNA_template>
            <first_frame> L  N  *  N  N  Y  L  A  F  I  R  S  G  C   : W  K  C  H  S  *  R  I  V  S  L  I  L  K  P  I  L  W  C  *  L  Y  R  A  H  Q  H  F  Q  V  W  S  *  N  L  K  H  S  V  S  Y  F  Q  A  F  D  D  S  D  *  D  L  I  L  V  T  L  T  R  G  F  V  *  L  I  R  V  K  W  Q  S  F  L  D  I  Q  H  A  D  N  Y  C  K  C  S  F  Q  L  Y  S  S  M  F  P  S  T  F  W  H  L  S  F  M  G  S  R  M  Y  L  L  S  R  F  *  *  A  N  I  M  Y  *  Q  C  F  A  P  *  *  N  T  L  L  K  S  I  S  F  P  A  *  R  N  I  G  G  *  V  I  L  A  S  Q  W  L  S  S  E  K  S  *  G  S  W  Q  L  *  Q  Q  A  K  P  S  L  I  *  *  R  F  I  M  R  K  I  I  S  W  L  R  M  G  S  I  D  L  S  G  I  P  V  T  V  V  S  S  S  G  L  L  V  H  K  *  C  Y  V  I  Q  Y  Q  P  L  H  S  Q  L  L  C  G  N  S  S  R  E  G  Y  L  T  R  S  F  S  S  S  S  S  L  V  L  T  T  K  I  I  *  E  K  F  L  L  V  F  H  L  *  G  D  Y  I  L  F  S  A  L  Y  I  H  A  *  R  H  L  L  I  G  A  E  I  T  L  F  M  N  F  I  F  L  D  T  L  Y  S  F  H  N  M  K  F  A  R  K  R  F  L  L  D  I  T  S  E  V  M  L  L  L  T  L  V  *  R  V  Y  L  I  C  I  I  M  F  S  S  Y  H  V  F  V  K  T  *  V  N  C  S  C  G  E  L  *  V  I  T  V  F  V  F  M  A  *  W  D  S  V  F  I  I  L  L  R  R  R  K  A   </first_frame>
            <second_frame>  L  I  K  I  I  T  S  P  S  S  D  L  V  V  :  G  N  V  I  L  K  G  *  F  H  *  F  *  S  P  F  C  G  A  N  C  T  E  L  I  N  I  F  R  F  G  V  E  I  *  N  I  A  Y  H  I  F  K  P  L  M  T  Q  T  E  T  S  F  *  *  L  *  R  E  V  L  F  D  L  F  A  *  N  G  R  A  F  W  I  Y  S  M  Q  T  I  I  A  N  V  H  F  N  Y  I  L  P  C  F  R  V  H  S  G  T  C  L  S  W  E  V  E  C  I  F  *  V  A  F  D  K  Q  T  L  C  T  S  N  V  L  L  L  D  R  I  P  Y  *  N  L  F  L  S  R  L  K  G  I  L  V  D  K  *  F  W  P  R  N  G  C  P  R  R  N  H  K  E  V  G  N  C  D  S  R  P  S  L  H  S  S  N  K  G  L  S  *  G  K  S  S  V  G  Y  E  W  D  L  *  I  C  P  A  S  R  L  L  W  F  L  H  L  V  C  W  Y  T  N  N  A  M  *  S  N  I  N  H  C  I  H  S  C  C  V  E  I  L  L  G  K  D  T  L  R  G  V  F  P  Q  A  V  L  W  F  *  L  R  R  L  Y  E  K  S  S  F  W  Y  S  T  C  E  V  I  I  S  S  S  V  L  Y  I  F  M  P  N  V  I  C  S  S  V  L  R  *  H  C  L  *  I  L  S  S  *  T  L  F  T  V  F  I  T  *  S  S  P  E  K  G  S  S  *  I  *  L  L  R  *  C  F  Y  *  P  L  Y  S  A  F  I  L  F  V  S  S  C  F  R  R  I  M  S  L  L  R  L  R  *  T  V  L  V  G  S  C  K  L  *  L  Y  L  Y  L  W  L  D  G  T  V  F  L  S  Y  S  *  G  E  E  R  L  </second_frame>
            <third_frame>   *  L  K  *  L  P  R  L  H  Q  I  W  L  L :   E  M  S  F  L  K  D  S  F  I  D  S  E  A  H  F  V  V  L  I  V  Q  S  S  S  T  F  S  G  L  E  L  K  F  E  T  *  R  I  I  F  S  S  L  *  *  L  R  L  R  P  H  F  S  N  F  N  E  R  F  C  L  T  Y  S  R  E  M  A  E  L  F  G  Y  T  A  C  R  Q  L  L  Q  M  F  I  S  I  I  F  F  H  V  S  E  Y  I  L  A  L  V  F  H  G  K  S  N  V  S  F  K  S  L  L  I  S  K  H  Y  V  L  A  M  F  C  S  L  I  E  Y  L  I  E  I  Y  F  F  P  G  L  K  E  Y  W  W  I  S  N  F  G  L  A  M  V  V  L  G  E  I  I  R  K  L  A  I  V  T  A  G  Q  A  F  T  H  L  I  K  V  Y  H  E  E  N  H  Q  L  V  T  N  G  I  Y  R  F  V  R  H  P  G  Y  C  G  F  F  I  W  S  V  G  T  Q  I  M  L  C  N  P  I  S  T  I  A  F  T  V  V  V  W  K  F  F  S  G  R  I  P  Y  E  E  F  F  L  K  Q  F  F  G  S  D  Y  E  D  Y  M  R  K  V  P  S  G  I  P  L  V  R  *  L  Y  P  L  Q  C  S  I  Y  S  C  L  T  S  S  A  H  R  C  *  D  N  T  V  Y  E  F  Y  L  L  R  H  S  L  Q  F  S  *  H  E  V  R  Q  K  K  V  P  P  R  Y  N  F  *  G  D  A  S  I  N  P  C  I  A  R  L  S  Y  L  Y  H  H  V  F  V  V  S  C  L  C  *  D  L  G  K  L  F  L  W  G  A  V  S  Y  N  C  I  C  I  Y  G  L  M  G  Q  C  F  Y  H  T  L  K  E  K  K  G  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39660" stop="40316"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LRLRPHFSNFNERFCLTYSREMAELFGYTACRQLLQMFISIIFFHVSEYILALVFHGKSNVSFKSLLISKHYVLAMFCSLIEYLIEIYFFPGLKEYWWISNFGLAMVVLGEIIRKLAIVTAGQAFTHLIKVYHEENHQLVTNGIYRFVRHPGYCGFFIWSVGTQIMLCNPISTIAFTVVVWKFFSGRIPYEEFFLKQFFGSDYEDYMRKVPSGIPLVR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="38537" e_stop="39331"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="38537" e_stop="39331" e_length="795"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38537" stop="39331"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U346004" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTTTGTGCATCTTCGGTATGTTTTCGTATTTGAATGAACTGAATTTGTTGTTTTCTGTTTTTGTTTCTGTTCTTCTTTTGTGGATTTAGGGTTGAGCCGCCTTTGCTTGTGTGCATCTCGATTAATTTATGGGGTAGCTTATCGTCTAGCTCACAGGTACAGGTTCAGTTTAGTGTTGCTGCTGATACTCGAACTGGGGATTTTTCAGTTTTTTTTTCAACTCACTAGGTCATTCCCTTGGGCGGGGTGAATTTTATAGGGCAATTTATGGTGTTCGTGAACCTATGGTATATCTATCAACTTAGATATTTTGGGTAGATACTCCGTTGAATTAATCTAATATTATCTGTTGACATTGATGCTACAAAAAAAGAAGCTTAAATGGTGCACTTGATGCTAAAAAAAAGTTCGTTGTTTTAATGGTGCAGCGATGTTATAAAAATTCTATATCTTCATCTGCCATTGTGGACTCATGATAGAACTCAATTTTCGAGTCATTTACTAAATGATACTGATGATATCTGTGCTGTAGATGTTGATTTCTAGGATAACTTTTTTATTAAGTTGCTTTTATCTCAATTAGTTCGTTAAAGAATGTGATAGTTAAATAGTTAATAACTTGTTATTTTTCATGATTTAGTGATGGGAGTGTTAAATCACAAGTTATCAAGTGTAGTGAAAATGTGCCTGAATCCGGTTAGTTTGGATAGGTGTTATGTTGATTGATTGATTTTTACTTTATTAGAGAGTCCAATATCTAAAAGCTCTGTATTGACCCCAAAATCCCATT</gDNA_template>
            <first_frame> F  Y  F  V  H  L  R  Y  V  F  V  F  E  *  T  E  F  V  V  F  C  F  C  F  C  S  S  F  V  D  L  G  L  S  R  L  C  L  C  A  S  R  L  I  Y  G  V  A  Y  R  L  A  H  R  Y  R  F  S  L  V  L  L  L  I  L  E  L  G  I  F  Q  F  F  F  Q  L  T  R  S  F  P  W  A  G  *  I  L  *  G  N  L  W  C  S  *  T  Y  G  I  S  I  N  L  D  I  L  G  R  Y  S  V  E  L  I  *  Y  Y  L  L  T  L  M  L  Q  K  K  K  L  K  W  C  T  *  C  *  K  K  V  R  C  F  N  G  A  A  M  L  *  K  F  Y  I  F  I  C  H  C  G  L  M  I  E  L  N  F  R  V  I  Y  *  M  I  L  M  I  S  V  L  *  M  L  I  S  R  I  T  F  L  L  S  C  F  Y  L  N  *  F  V  K  E  C  D  S  *  I  V  N  N  L  L  F  F  M  I  *  *  W  E  C  *  I  T  S  Y  Q  V  *  *  K  C  A  *  I  R  L  V  W  I  G  V  M  L  I  D  *  F  L  L  Y  *  R  V  Q  Y  L  K  A  L  Y  *  P  Q  N  P  I </first_frame>
            <second_frame>  F  I  L  C  I  F  G  M  F  S  Y  L  N  E  L  N  L  L  F  S  V  F  V  S  V  L  L  L  W  I  *  G  *  A  A  F  A  C  V  H  L  D  *  F  M  G  *  L  I  V  *  L  T  G  T  G  S  V  *  C  C  C  *  Y  S  N  W  G  F  F  S  F  F  F  N  S  L  G  H  S  L  G  R  G  E  F  Y  R  A  I  Y  G  V  R  E  P  M  V  Y  L  S  T  *  I  F  W  V  D  T  P  L  N  *  S  N  I  I  C  *  H  *  C  Y  K  K  R  S  L  N  G  A  L  D  A  K  K  K  F  V  V  L  M  V  Q  R  C  Y  K  N  S  I  S  S  S  A  I  V  D  S  *  *  N  S  I  F  E  S  F  T  K  *  Y  *  *  Y  L  C  C  R  C  *  F  L  G  *  L  F  Y  *  V  A  F  I  S  I  S  S  L  K  N  V  I  V  K  *  L  I  T  C  Y  F  S  *  F  S  D  G  S  V  K  S  Q  V  I  K  C  S  E  N  V  P  E  S  G  *  F  G  *  V  L  C  *  L  I  D  F  Y  F  I  R  E  S  N  I  *  K  L  C  I  D  P  K  I  P   </second_frame>
            <third_frame>   L  F  C  A  S  S  V  C  F  R  I  *  M  N  *  I  C  C  F  L  F  L  F  L  F  F  F  C  G  F  R  V  E  P  P  L  L  V  C  I  S  I  N  L  W  G  S  L  S  S  S  S  Q  V  Q  V  Q  F  S  V  A  A  D  T  R  T  G  D  F  S  V  F  F  S  T  H  *  V  I  P  L  G  G  V  N  F  I  G  Q  F  M  V  F  V  N  L  W  Y  I  Y  Q  L  R  Y  F  G  *  I  L  R  *  I  N  L  I  L  S  V  D  I  D  A  T  K  K  E  A  *  M  V  H  L  M  L  K  K  S  S  L  F  *  W  C  S  D  V  I  K  I  L  Y  L  H  L  P  L  W  T  H  D  R  T  Q  F  S  S  H  L  L  N  D  T  D  D  I  C  A  V  D  V  D  F  *  D  N  F  F  I  K  L  L  L  S  Q  L  V  R  *  R  M  *  *  L  N  S  *  *  L  V  I  F  H  D  L  V  M  G  V  L  N  H  K  L  S  S  V  V  K  M  C  L  N  P  V  S  L  D  R  C  Y  V  D  *  L  I  F  T  L  L  E  S  P  I  S  K  S  S  V  L  T  P  K  S  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="38579" stop="38791"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TEFVVFCFCFCSSFVDLGLSRLCLCASRLIYGVAYRLAHRYRFSLVLLLILELGIFQFFFQLTRSFPWAG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="44394" PGL_stop="49565"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="44394" e_stop="44670"/>
            <exon e_start="46529" e_stop="46581"/>
            <exon e_start="47669" e_stop="47804"/>
            <exon e_start="48683" e_stop="48858"/>
            <exon e_start="48946" e_stop="49565"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.893" acc_prob="0.609" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.790" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.846" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.950" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="44394" e_stop="44670" e_length="277"/>
          </exon>
          <intron i_serial="1" don_prob="0.893" acc_prob="0.609">
            <gDNA_intron_boundary i_start="44671" i_stop="46528" i_length="1858"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="46529" e_stop="46581" e_length="53"/>
          </exon>
          <intron i_serial="2" don_prob="0.991" acc_prob="0.790">
            <gDNA_intron_boundary i_start="46582" i_stop="47668" i_length="1087"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="47669" e_stop="47804" e_length="136"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.846">
            <gDNA_intron_boundary i_start="47805" i_stop="48682" i_length="878"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="48683" e_stop="48858" e_length="176"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.950">
            <gDNA_intron_boundary i_start="48859" i_stop="48945" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="48946" e_stop="49565" e_length="620"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44394" stop="44670"/>
              <exon start="46529" stop="46581"/>
              <exon start="47669" stop="47804"/>
              <exon start="48683" stop="48858"/>
              <exon start="48946" stop="49565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U321776" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGGCCGAATCCATCTCAATTTTCTTTTCTTCTGATGAAAATTAAGAATGTTGAGTGGGTCTCGGTGTAATTTTCATTGCAGTGCTCACCAATTTGCCACCATTTTAGCTGCTTCTACACTGACCTCAGAATCTTCTTTCAAAAATTTTAGAATCAGATTGAGGAGCAGGAACAGTAATAGTTCTTGTTTGAGCAATAAAGTTTGTGATTTTGGGGTCAATTGTGTTCAACCCAAATCTTCAGATACCCAAAGCTCTTTGCTTTCTGAAACTTTGAG : CCAATCTGGAACAGATGAGGAGCCTCCATCAGAAAGATTGCCAATTCTTACAG : GCGGGATAGTAGCTCTGGGGAAATTTGATGCACTCCATATTGGTCACCGCGAGCTTGCAATTCAAGCAGCAAAGAGAGGAATTCCATTTCTTCTTTCATTTGTTGGGATGGCGGAAGTACTTGGATGGGAACCAAG : GGCTCCCATTGTTGCTGAATGTGATCGCAAAAGGATTCTTTCGTCTTGGGCTCCTTATTGCGGTAGTATAATGCCAAGGGAACTCCAGATAGATTTTTCGAAAGTTCGATATCTTACGCCTTGTCAGTTTGTGGAGAAGCTTTCCAAAGAGCTGGGAGTACGAGGAGTTGTTGCTG : GCGAGAATTATCGTTTTGGATATAGAGCTGCTGGTGATGCATCAGACCTTGTGAAGCTCTGTGAGGAGTATGGATTAGAGGCTTATATAATCAATTCTGTCATGGACACAAATCAAATTTCTGGAGACTTGAACTCTAAAGACGGTAAAGAGAGAGGGCAAGTATCATCTACTCGTGTTAGGTATGCCCTTCACAAGGGAGACATGAAATATGTGTCAGAGCTATTAGGTCGGAACCATCGTCTTATTTTAATGATGGAAGACCAAGAAAGGTTTACTAGTGAGAGAAATAGGCTGTCTGCTCCAAAGTCTTGTTTGTTGAATCTTGCACCTAAGGAAGGTCTTTATGAGAATTGTTCAGTTTTGATTGACAAGAGTGTTATTCCCTGCAGAGTAATAGTTGATACAACATATATTCATTTGGAATCCTATGAGGTAGCTAGTTTTTCCTGTGTTACTTCTCAAGACTTAAAGATATTGGGTATTGACTTTGGCAGTCCAAAGTTAGAAGGGGTTCAAATTTTGTAATTCATTCCCGATAATTTGTTAGTGCAACCATTTCTGAATGTCCTTCAGTGTTTAAGTATGAGTATGATTTTTTAAGCGGTACCTTTCTGCTAA</gDNA_template>
            <first_frame> *  A  E  S  I  S  I  F  F  S  S  D  E  N  *  E  C  *  V  G  L  G  V  I  F  I  A  V  L  T  N  L  P  P  F  *  L  L  L  H  *  P  Q  N  L  L  S  K  I  L  E  S  D  *  G  A  G  T  V  I  V  L  V  *  A  I  K  F  V  I  L  G  S  I  V  F  N  P  N  L  Q  I  P  K  A  L  C  F  L  K  L  *   : A  N  L  E  Q  M  R  S  L  H  Q  K  D  C  Q  F  L  Q  :  A  G  *  *  L  W  G  N  L  M  H  S  I  L  V  T  A  S  L  Q  F  K  Q  Q  R  E  E  F  H  F  F  F  H  L  L  G  W  R  K  Y  L  D  G  N  Q   : G  L  P  L  L  L  N  V  I  A  K  G  F  F  R  L  G  L  L  I  A  V  V  *  C  Q  G  N  S  R  *  I  F  R  K  F  D  I  L  R  L  V  S  L  W  R  S  F  P  K  S  W  E  Y  E  E  L  L  L  :  A  R  I  I  V  L  D  I  E  L  L  V  M  H  Q  T  L  *  S  S  V  R  S  M  D  *  R  L  I  *  S  I  L  S  W  T  Q  I  K  F  L  E  T  *  T  L  K  T  V  K  R  E  G  K  Y  H  L  L  V  L  G  M  P  F  T  R  E  T  *  N  M  C  Q  S  Y  *  V  G  T  I  V  L  F  *  *  W  K  T  K  K  G  L  L  V  R  E  I  G  C  L  L  Q  S  L  V  C  *  I  L  H  L  R  K  V  F  M  R  I  V  Q  F  *  L  T  R  V  L  F  P  A  E  *  *  L  I  Q  H  I  F  I  W  N  P  M  R  *  L  V  F  P  V  L  L  L  K  T  *  R  Y  W  V  L  T  L  A  V  Q  S  *  K  G  F  K  F  C  N  S  F  P  I  I  C  *  C  N  H  F  *  M  S  F  S  V  *  V  *  V  *  F  F  K  R  Y  L  S  A   </first_frame>
            <second_frame>  R  P  N  P  S  Q  F  S  F  L  L  M  K  I  K  N  V  E  W  V  S  V  *  F  S  L  Q  C  S  P  I  C  H  H  F  S  C  F  Y  T  D  L  R  I  F  F  Q  K  F  *  N  Q  I  E  E  Q  E  Q  *  *  F  L  F  E  Q  *  S  L  *  F  W  G  Q  L  C  S  T  Q  I  F  R  Y  P  K  L  F  A  F  *  N  F  E  :  P  I  W  N  R  *  G  A  S  I  R  K  I  A  N  S  Y  R :   R  D  S  S  S  G  E  I  *  C  T  P  Y  W  S  P  R  A  C  N  S  S  S  K  E  R  N  S  I  S  S  F  I  C  W  D  G  G  S  T  W  M  G  T  K  :  G  S  H  C  C  *  M  *  S  Q  K  D  S  F  V  L  G  S  L  L  R  *  Y  N  A  K  G  T  P  D  R  F  F  E  S  S  I  S  Y  A  L  S  V  C  G  E  A  F  Q  R  A  G  S  T  R  S  C  C  W :   R  E  L  S  F  W  I  *  S  C  W  *  C  I  R  P  C  E  A  L  *  G  V  W  I  R  G  L  Y  N  Q  F  C  H  G  H  K  S  N  F  W  R  L  E  L  *  R  R  *  R  E  R  A  S  I  I  Y  S  C  *  V  C  P  S  Q  G  R  H  E  I  C  V  R  A  I  R  S  E  P  S  S  Y  F  N  D  G  R  P  R  K  V  Y  *  *  E  K  *  A  V  C  S  K  V  L  F  V  E  S  C  T  *  G  R  S  L  *  E  L  F  S  F  D  *  Q  E  C  Y  S  L  Q  S  N  S  *  Y  N  I  Y  S  F  G  I  L  *  G  S  *  F  F  L  C  Y  F  S  R  L  K  D  I  G  Y  *  L  W  Q  S  K  V  R  R  G  S  N  F  V  I  H  S  R  *  F  V  S  A  T  I  S  E  C  P  S  V  F  K  Y  E  Y  D  F  L  S  G  T  F  L  L  </second_frame>
            <third_frame>   G  R  I  H  L  N  F  L  F  F  *  *  K  L  R  M  L  S  G  S  R  C  N  F  H  C  S  A  H  Q  F  A  T  I  L  A  A  S  T  L  T  S  E  S  S  F  K  N  F  R  I  R  L  R  S  R  N  S  N  S  S  C  L  S  N  K  V  C  D  F  G  V  N  C  V  Q  P  K  S  S  D  T  Q  S  S  L  L  S  E  T  L  S :   Q  S  G  T  D  E  E  P  P  S  E  R  L  P  I  L  T   : G  G  I  V  A  L  G  K  F  D  A  L  H  I  G  H  R  E  L  A  I  Q  A  A  K  R  G  I  P  F  L  L  S  F  V  G  M  A  E  V  L  G  W  E  P  R :   A  P  I  V  A  E  C  D  R  K  R  I  L  S  S  W  A  P  Y  C  G  S  I  M  P  R  E  L  Q  I  D  F  S  K  V  R  Y  L  T  P  C  Q  F  V  E  K  L  S  K  E  L  G  V  R  G  V  V  A   : G  E  N  Y  R  F  G  Y  R  A  A  G  D  A  S  D  L  V  K  L  C  E  E  Y  G  L  E  A  Y  I  I  N  S  V  M  D  T  N  Q  I  S  G  D  L  N  S  K  D  G  K  E  R  G  Q  V  S  S  T  R  V  R  Y  A  L  H  K  G  D  M  K  Y  V  S  E  L  L  G  R  N  H  R  L  I  L  M  M  E  D  Q  E  R  F  T  S  E  R  N  R  L  S  A  P  K  S  C  L  L  N  L  A  P  K  E  G  L  Y  E  N  C  S  V  L  I  D  K  S  V  I  P  C  R  V  I  V  D  T  T  Y  I  H  L  E  S  Y  E  V  A  S  F  S  C  V  T  S  Q  D  L  K  I  L  G  I  D  F  G  S  P  K  L  E  G  V  Q  I  L  *  F  I  P  D  N  L  L  V  Q  P  F  L  N  V  L  Q  C  L  S  M  S  M  I  F  *  A  V  P  F  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="44432" stop="44670"/>
                    <exon start="46529" stop="46581"/>
                    <exon start="47669" stop="47804"/>
                    <exon start="48683" stop="48858"/>
                    <exon start="48946" stop="49472"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1128</number_coding_nucleotides>
                  <number_encoded_amino_acids>376</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRMLSGSRCNFHCSAHQFATILAASTLTSESSFKNFRIRLRSRNSNSSCLSNKVCDFGVNCVQPKSSDTQSSLLSETLSQSGTDEEPPSERLPILTGGIVALGKFDALHIGHRELAIQAAKRGIPFLLSFVGMAEVLGWEPRAPIVAECDRKRILSSWAPYCGSIMPRELQIDFSKVRYLTPCQFVEKLSKELGVRGVVAGENYRFGYRAAGDASDLVKLCEEYGLEAYIINSVMDTNQISGDLNSKDGKERGQVSSTRVRYALHKGDMKYVSELLGRNHRLILMMEDQERFTSERNRLSAPKSCLLNLAPKEGLYENCSVLIDKSVIPCRVIVDTTYIHLESYEVASFSCVTSQDLKILGIDFGSPKLEGVQIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="57642" PGL_stop="56067"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57642" e_stop="57438"/>
            <exon e_start="57344" e_stop="57270"/>
            <exon e_start="56868" e_stop="56594"/>
            <exon e_start="56513" e_stop="56067"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.981" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="57642" e_stop="57438" e_length="205"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.991">
            <gDNA_intron_boundary i_start="57437" i_stop="57345" i_length="93"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="57344" e_stop="57270" e_length="75"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="57269" i_stop="56869" i_length="401"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="56868" e_stop="56594" e_length="275"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.981">
            <gDNA_intron_boundary i_start="56593" i_stop="56514" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56513" e_stop="56067" e_length="447"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57642" stop="57438"/>
              <exon start="57344" stop="57270"/>
              <exon start="56868" stop="56594"/>
              <exon start="56513" stop="56067"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U325813" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCCCACATACCTTCAAAATACAGTAATACTCCACCTCAAACCAGAATCACAATGGACTTACTCCGTGGAAATTCGGTGGGTATTCCCATGAGTTCATCAGTAGGTTCACTTGAAAGCCAGCCGAAAAGACTACTTGCCTTACCTGCTTGCGAAGACCATATCGTTCCATATGCAACTTCAAAGAACTTGTCTCAAATTAAGCAGA : GAAGATATGTCATTGGTAAGATGAACAAATTGGGAGAAAGGGTGGATTGTCTAGTAAAAAGCATCCGCGAGCATG : TGAGCCTAAGCCCGAAACTAACAGAAACTTTAAAGGGAAAATTGAGCCTTGGAGCAAAAATCCTTCAAGTAGGAGGGTTGGAGAAAATATTCAGGCAGAAGTTCAGTGTTAGAGATGATGAAAAGCTATTGAATGTTTCTCAATGCTATTTATCAACGACAGCTGGTCCAATAGCAGGCCTTCTCTTCATCTCTACCGATAAGATTGCTTTCTGCAGCGAGAGATCAATAAAGCTCTTATCTCCAACTGGAAAGTTGCTTAGAATCTACTATAAG : GTAACCATCCCAATAAGTAAGATAATGAAAGCAAAAGAGAGCAAAAATATGCAAAAGCCATCACAGAAGTATATACAAGTAATTACAGAGGATGATTTTGAGTTCTGGTTTATGGGATTCCTCAATCATCAAAAGACACTGAGATATCTGCAGCAGGCAATCTCCAGCTCAAGCAAGTTATGAAGACACATTTTTTTTTCTAATGAGCTCGTTCTTCAATGTAAAACGTTCATGCAAAAACGAATTCAGGGATCTGTTAAAACTTTGTAACTAGATCCATTGCTCAAAGGAGGCTTAAGGTTTAACCTTTGTGCCCTTAAGAGTTAATGGGAATGTATAGACTTTTTTTTCTCTAAAACTGGTAGCTTTTGTATAGACTTATTTTGTTTTTTGAGATAGCAAGAGATACGAATGTACAAATTTATTATAAAACTTGTGGAGATAGAT</gDNA_template>
            <first_frame> S  H  I  P  S  K  Y  S  N  T  P  P  Q  T  R  I  T  M  D  L  L  R  G  N  S  V  G  I  P  M  S  S  S  V  G  S  L  E  S  Q  P  K  R  L  L  A  L  P  A  C  E  D  H  I  V  P  Y  A  T  S  K  N  L  S  Q  I  K  Q   : R  R  Y  V  I  G  K  M  N  K  L  G  E  R  V  D  C  L  V  K  S  I  R  E  H   : V  S  L  S  P  K  L  T  E  T  L  K  G  K  L  S  L  G  A  K  I  L  Q  V  G  G  L  E  K  I  F  R  Q  K  F  S  V  R  D  D  E  K  L  L  N  V  S  Q  C  Y  L  S  T  T  A  G  P  I  A  G  L  L  F  I  S  T  D  K  I  A  F  C  S  E  R  S  I  K  L  L  S  P  T  G  K  L  L  R  I  Y  Y  K  :  V  T  I  P  I  S  K  I  M  K  A  K  E  S  K  N  M  Q  K  P  S  Q  K  Y  I  Q  V  I  T  E  D  D  F  E  F  W  F  M  G  F  L  N  H  Q  K  T  L  R  Y  L  Q  Q  A  I  S  S  S  S  K  L  *  R  H  I  F  F  S  N  E  L  V  L  Q  C  K  T  F  M  Q  K  R  I  Q  G  S  V  K  T  L  *  L  D  P  L  L  K  G  G  L  R  F  N  L  C  A  L  K  S  *  W  E  C  I  D  F  F  F  S  K  T  G  S  F  C  I  D  L  F  C  F  L  R  *  Q  E  I  R  M  Y  K  F  I  I  K  L  V  E  I  D </first_frame>
            <second_frame>  P  T  Y  L  Q  N  T  V  I  L  H  L  K  P  E  S  Q  W  T  Y  S  V  E  I  R  W  V  F  P  *  V  H  Q  *  V  H  L  K  A  S  R  K  D  Y  L  P  Y  L  L  A  K  T  I  S  F  H  M  Q  L  Q  R  T  C  L  K  L  S  R  :  E  D  M  S  L  V  R  *  T  N  W  E  K  G  W  I  V  *  *  K  A  S  A  S  M  :  *  A  *  A  R  N  *  Q  K  L  *  R  E  N  *  A  L  E  Q  K  S  F  K  *  E  G  W  R  K  Y  S  G  R  S  S  V  L  E  M  M  K  S  Y  *  M  F  L  N  A  I  Y  Q  R  Q  L  V  Q  *  Q  A  F  S  S  S  L  P  I  R  L  L  S  A  A  R  D  Q  *  S  S  Y  L  Q  L  E  S  C  L  E  S  T  I  R :   *  P  S  Q  *  V  R  *  *  K  Q  K  R  A  K  I  C  K  S  H  H  R  S  I  Y  K  *  L  Q  R  M  I  L  S  S  G  L  W  D  S  S  I  I  K  R  H  *  D  I  C  S  R  Q  S  P  A  Q  A  S  Y  E  D  T  F  F  F  L  M  S  S  F  F  N  V  K  R  S  C  K  N  E  F  R  D  L  L  K  L  C  N  *  I  H  C  S  K  E  A  *  G  L  T  F  V  P  L  R  V  N  G  N  V  *  T  F  F  S  L  K  L  V  A  F  V  *  T  Y  F  V  F  *  D  S  K  R  Y  E  C  T  N  L  L  *  N  L  W  R  *   </second_frame>
            <third_frame>   P  H  T  F  K  I  Q  *  Y  S  T  S  N  Q  N  H  N  G  L  T  P  W  K  F  G  G  Y  S  H  E  F  I  S  R  F  T  *  K  P  A  E  K  T  T  C  L  T  C  L  R  R  P  Y  R  S  I  C  N  F  K  E  L  V  S  N  *  A  E :   K  I  C  H  W  *  D  E  Q  I  G  R  K  G  G  L  S  S  K  K  H  P  R  A  C :   E  P  K  P  E  T  N  R  N  F  K  G  K  I  E  P  W  S  K  N  P  S  S  R  R  V  G  E  N  I  Q  A  E  V  Q  C  *  R  *  *  K  A  I  E  C  F  S  M  L  F  I  N  D  S  W  S  N  S  R  P  S  L  H  L  Y  R  *  D  C  F  L  Q  R  E  I  N  K  A  L  I  S  N  W  K  V  A  *  N  L  L  *   : G  N  H  P  N  K  *  D  N  E  S  K  R  E  Q  K  Y  A  K  A  I  T  E  V  Y  T  S  N  Y  R  G  *  F  *  V  L  V  Y  G  I  P  Q  S  S  K  D  T  E  I  S  A  A  G  N  L  Q  L  K  Q  V  M  K  T  H  F  F  F  *  *  A  R  S  S  M  *  N  V  H  A  K  T  N  S  G  I  C  *  N  F  V  T  R  S  I  A  Q  R  R  L  K  V  *  P  L  C  P  *  E  L  M  G  M  Y  R  L  F  F  L  *  N  W  *  L  L  Y  R  L  I  L  F  F  E  I  A  R  D  T  N  V  Q  I  Y  Y  K  T  C  G  D  R  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57642" stop="57438"/>
                    <exon start="57344" stop="57270"/>
                    <exon start="56868" stop="56594"/>
                    <exon start="56513" stop="56331"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHIPSKYSNTPPQTRITMDLLRGNSVGIPMSSSVGSLESQPKRLLALPACEDHIVPYATSKNLSQIKQRRYVIGKMNKLGERVDCLVKSIREHVSLSPKLTETLKGKLSLGAKILQVGGLEKIFRQKFSVRDDEKLLNVSQCYLSTTAGPIAGLLFISTDKIAFCSERSIKLLSPTGKLLRIYYKVTIPISKIMKAKESKNMQKPSQKYIQVITEDDFEFWFMGFLNHQKTLRYLQQAISSSSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="62452" PGL_stop="62104"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62452" e_stop="62104"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="62452" e_stop="62104" e_length="349"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62452" stop="62104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U330305" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATGGAAAAGCCATCACAGAAGTATATACAGTTAGTTACAGAGGACGATTACGAGTTCTGGTTTATGGGGTTCTTTAATAATCAAAAAACTCTAAGATATCTGCAGCAGGCAATTTCAACTTTCACAAACTTCAATCAGCTAAGACGATAGTTTTTTAATTTTATTTTGTTTCCTAATACACCCATTCATCAATGTAAAATGTTGATGCAAGATGCAGATATGTTCAAACTTGTAACTAGCTCCATTGCTCAAAGGAGGTTTTAGATTTTTTAGGCTTTAAGCCTAAGTTGTTAATACGAATGTATAGACTTATTGTAAAACTAATCAAACAGGAGGCTAATTCATCTT</gDNA_template>
            <first_frame> Y  G  K  A  I  T  E  V  Y  T  V  S  Y  R  G  R  L  R  V  L  V  Y  G  V  L  *  *  S  K  N  S  K  I  S  A  A  G  N  F  N  F  H  K  L  Q  S  A  K  T  I  V  F  *  F  Y  F  V  S  *  Y  T  H  S  S  M  *  N  V  D  A  R  C  R  Y  V  Q  T  C  N  *  L  H  C  S  K  E  V  L  D  F  L  G  F  K  P  K  L  L  I  R  M  Y  R  L  I  V  K  L  I  K  Q  E  A  N  S  S  </first_frame>
            <second_frame>  M  E  K  P  S  Q  K  Y  I  Q  L  V  T  E  D  D  Y  E  F  W  F  M  G  F  F  N  N  Q  K  T  L  R  Y  L  Q  Q  A  I  S  T  F  T  N  F  N  Q  L  R  R  *  F  F  N  F  I  L  F  P  N  T  P  I  H  Q  C  K  M  L  M  Q  D  A  D  M  F  K  L  V  T  S  S  I  A  Q  R  R  F  *  I  F  *  A  L  S  L  S  C  *  Y  E  C  I  D  L  L  *  N  *  S  N  R  R  L  I  H  L </second_frame>
            <third_frame>   W  K  S  H  H  R  S  I  Y  S  *  L  Q  R  T  I  T  S  S  G  L  W  G  S  L  I  I  K  K  L  *  D  I  C  S  R  Q  F  Q  L  S  Q  T  S  I  S  *  D  D  S  F  L  I  L  F  C  F  L  I  H  P  F  I  N  V  K  C  *  C  K  M  Q  I  C  S  N  L  *  L  A  P  L  L  K  G  G  F  R  F  F  R  L  *  A  *  V  V  N  T  N  V  *  T  Y  C  K  T  N  Q  T  G  G  *  F  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0332P16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="86970" PGL_stop="95768"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="86970" e_stop="86998"/>
            <exon e_start="94709" e_stop="94794"/>
            <exon e_start="95084" e_stop="95768"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.996" e_score="0.897"/>
          <exon-intron don_prob="0.992" acc_prob="0.861" e_score="0.977"/>
          <exon-only e_score="0.956"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.897">
            <gDNA_exon_boundary e_start="86970" e_stop="86998" e_length="29"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.996">
            <gDNA_intron_boundary i_start="86999" i_stop="94708" i_length="7710"/>
          </intron>
          <exon e_serial="2" e_score="0.977">
            <gDNA_exon_boundary e_start="94709" e_stop="94794" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.861">
            <gDNA_intron_boundary i_start="94795" i_stop="95083" i_length="289"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="95084" e_stop="95768" e_length="685"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86970" stop="86998"/>
              <exon start="94709" stop="94794"/>
              <exon start="95084" stop="95768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U323512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAAGAAGAAACAGCCAAACTAAATTG : GATTTATCGTTCAAGAAAAAGGGATGGAACACTCCATTGAAATAGATGATCAAATTCCACTGCTTTCTCAAACTTATCAAGATGAG : ATAGAAGGAGGGATGAAAGTGGATCCTTTATTTGAGAATTTATTCAATTCGCGTGTTAAACCAATTAGCATATTCAAAGTAAATGTGGGGCTACGTGAATCAAATCCAGATGCTTATACACCAAAGATGGTCTCTATTGGTCCTTACCATAATGGAAAACCTCAATTTCGTCCAATGCAAAAGAACAAACTATTGTACCTACGACGGTTTCTTAGACGAAAGGAGAGTCTTGATTTGGATAGTTGCATCAATGAGTTGGAGGAGGAAGCAAGGAATTGTTACGATGATATAGAAGACCTCAATATTGGAAGCCGCGAATTTTGCAAGATGTTGTTACTTGATGGTTGTTTTGTGGTTGAGTTTATTCGAGAGCGTGTTGAGATAGGCCCAAGACTAGAAGACGAAATCATCAAAAGTGACATTGGTTGCATATATAAGCAAATACTCCGAGATTTGATGTTACTAAAAAACCAACTTCCTTTCTTTGTCCTCGACAAGCTTCATGAGATGACAAAGCAAGATGATGATATCCCATTGGCAATACAAGCTGTGAAGTCGTTTACTTCTTTTGTTGACATAGAAGAAATTATCCATAAACATTCCGATTCACCCTTAATAAAGATAGCATCTAACGCAGGTGATATCAAACATTTACTTCATGCAGTACACATACTTTCATGTCATG</gDNA_template>
            <first_frame> T  K  E  E  T  A  K  L  N  W :   I  Y  R  S  R  K  R  D  G  T  L  H  *  N  R  *  S  N  S  T  A  F  S  N  L  S  R  *   : D  R  R  R  D  E  S  G  S  F  I  *  E  F  I  Q  F  A  C  *  T  N  *  H  I  Q  S  K  C  G  A  T  *  I  K  S  R  C  L  Y  T  K  D  G  L  Y  W  S  L  P  *  W  K  T  S  I  S  S  N  A  K  E  Q  T  I  V  P  T  T  V  S  *  T  K  G  E  S  *  F  G  *  L  H  Q  *  V  G  G  G  S  K  E  L  L  R  *  Y  R  R  P  Q  Y  W  K  P  R  I  L  Q  D  V  V  T  *  W  L  F  C  G  *  V  Y  S  R  A  C  *  D  R  P  K  T  R  R  R  N  H  Q  K  *  H  W  L  H  I  *  A  N  T  P  R  F  D  V  T  K  K  P  T  S  F  L  C  P  R  Q  A  S  *  D  D  K  A  R  *  *  Y  P  I  G  N  T  S  C  E  V  V  Y  F  F  C  *  H  R  R  N  Y  P  *  T  F  R  F  T  L  N  K  D  S  I  *  R  R  *  Y  Q  T  F  T  S  C  S  T  H  T  F  M  S   </first_frame>
            <second_frame>  Q  K  K  K  Q  P  N  *  I   : G  F  I  V  Q  E  K  G  M  E  H  S  I  E  I  D  D  Q  I  P  L  L  S  Q  T  Y  Q  D  E  :  I  E  G  G  M  K  V  D  P  L  F  E  N  L  F  N  S  R  V  K  P  I  S  I  F  K  V  N  V  G  L  R  E  S  N  P  D  A  Y  T  P  K  M  V  S  I  G  P  Y  H  N  G  K  P  Q  F  R  P  M  Q  K  N  K  L  L  Y  L  R  R  F  L  R  R  K  E  S  L  D  L  D  S  C  I  N  E  L  E  E  E  A  R  N  C  Y  D  D  I  E  D  L  N  I  G  S  R  E  F  C  K  M  L  L  L  D  G  C  F  V  V  E  F  I  R  E  R  V  E  I  G  P  R  L  E  D  E  I  I  K  S  D  I  G  C  I  Y  K  Q  I  L  R  D  L  M  L  L  K  N  Q  L  P  F  F  V  L  D  K  L  H  E  M  T  K  Q  D  D  D  I  P  L  A  I  Q  A  V  K  S  F  T  S  F  V  D  I  E  E  I  I  H  K  H  S  D  S  P  L  I  K  I  A  S  N  A  G  D  I  K  H  L  L  H  A  V  H  I  L  S  C  H  </second_frame>
            <third_frame>   K  R  R  N  S  Q  T  K  L  :  D  L  S  F  K  K  K  G  W  N  T  P  L  K  *  M  I  K  F  H  C  F  L  K  L  I  K  M  R :   *  K  E  G  *  K  W  I  L  Y  L  R  I  Y  S  I  R  V  L  N  Q  L  A  Y  S  K  *  M  W  G  Y  V  N  Q  I  Q  M  L  I  H  Q  R  W  S  L  L  V  L  T  I  M  E  N  L  N  F  V  Q  C  K  R  T  N  Y  C  T  Y  D  G  F  L  D  E  R  R  V  L  I  W  I  V  A  S  M  S  W  R  R  K  Q  G  I  V  T  M  I  *  K  T  S  I  L  E  A  A  N  F  A  R  C  C  Y  L  M  V  V  L  W  L  S  L  F  E  S  V  L  R  *  A  Q  D  *  K  T  K  S  S  K  V  T  L  V  A  Y  I  S  K  Y  S  E  I  *  C  Y  *  K  T  N  F  L  S  L  S  S  T  S  F  M  R  *  Q  S  K  M  M  I  S  H  W  Q  Y  K  L  *  S  R  L  L  L  L  L  T  *  K  K  L  S  I  N  I  P  I  H  P  *  *  R  *  H  L  T  Q  V  I  S  N  I  Y  F  M  Q  Y  T  Y  F  H  V  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04HBa0332P16.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="86995" stop="86998"/>
                    <exon start="94709" stop="94794"/>
                    <exon start="95084" stop="95767"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>774</number_coding_nucleotides>
                  <number_encoded_amino_acids>258</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IGFIVQEKGMEHSIEIDDQIPLLSQTYQDEIEGGMKVDPLFENLFNSRVKPISIFKVNVGLRESNPDAYTPKMVSIGPYHNGKPQFRPMQKNKLLYLRRFLRRKESLDLDSCINELEEEARNCYDDIEDLNIGSREFCKMLLLDGCFVVEFIRERVEIGPRLEDEIIKSDIGCIYKQILRDLMLLKNQLPFFVLDKLHEMTKQDDDIPLAIQAVKSFTSFVDIEEIIHKHSDSPLIKIASNAGDIKHLLHAVHILSCH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="108605" PGL_stop="107970"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108605" e_stop="107970"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="108605" e_stop="107970" e_length="636"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108605" stop="107970"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U341428" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATGTAGGGATTAGTTATAACTTATGAGGAAATCTATATACTTTCTCCATTTCAAAAAGAATGCCCTAGTTTGACTTGGAACAAAGTTTAAGAAAAGAAAGAAGACTTTTTAATTTTGTGGTTTTAAAGTGTTGCCAAAAAGGAAATAGAGACATTCTTTTTTAAACGGAGGGAGTATTATTTTATGTATGTATTATTAATATGTAAAGATTAGTTATTCATGCATAAGTTATTCTATTCTATCTCGCATAAAATAATACATAGATTCTCTCATATCTTATAATATATATACATCTTATACGAGTTTCTAAATTGTCAATCAAATGTCATATTAATGCCTACCTACCAATTAACACCATATAAATTATACAATAATTAATAAGTGAATAACTTTTTCCTTATAAATTGATATTATTACCTCTTTGGTTTGGCTGTTTCTTCTTTTGTATTTATTCAACTCTTGCTTCTCTCGGATTTTTCATTGCTATGAAGTACTTATTATATAGAGAAAAAAAAGAAGAGAGAGATTGATAAATACTGTTAATTGTAGGGTAGGGGGTGTCAATGTTAGGTTCGATCGATTATTTTATAAAATTTAAATAAAGGTATAGTATCATCTTCAACTTCATCATCTCA</gDNA_template>
            <first_frame> N  V  G  I  S  Y  N  L  *  G  N  L  Y  T  F  S  I  S  K  R  M  P  *  F  D  L  E  Q  S  L  R  K  E  R  R  L  F  N  F  V  V  L  K  C  C  Q  K  G  N  R  D  I  L  F  *  T  E  G  V  L  F  Y  V  C  I  I  N  M  *  R  L  V  I  H  A  *  V  I  L  F  Y  L  A  *  N  N  T  *  I  L  S  Y  L  I  I  Y  I  H  L  I  R  V  S  K  L  S  I  K  C  H  I  N  A  Y  L  P  I  N  T  I  *  I  I  Q  *  L  I  S  E  *  L  F  P  Y  K  L  I  L  L  P  L  W  F  G  C  F  F  F  C  I  Y  S  T  L  A  S  L  G  F  F  I  A  M  K  Y  L  L  Y  R  E  K  K  E  E  R  D  *  *  I  L  L  I  V  G  *  G  V  S  M  L  G  S  I  D  Y  F  I  K  F  K  *  R  Y  S  I  I  F  N  F  I  I  S </first_frame>
            <second_frame>  M  *  G  L  V  I  T  Y  E  E  I  Y  I  L  S  P  F  Q  K  E  C  P  S  L  T  W  N  K  V  *  E  K  K  E  D  F  L  I  L  W  F  *  S  V  A  K  K  E  I  E  T  F  F  F  K  R  R  E  Y  Y  F  M  Y  V  L  L  I  C  K  D  *  L  F  M  H  K  L  F  Y  S  I  S  H  K  I  I  H  R  F  S  H  I  L  *  Y  I  Y  I  L  Y  E  F  L  N  C  Q  S  N  V  I  L  M  P  T  Y  Q  L  T  P  Y  K  L  Y  N  N  *  *  V  N  N  F  F  L  I  N  *  Y  Y  Y  L  F  G  L  A  V  S  S  F  V  F  I  Q  L  L  L  L  S  D  F  S  L  L  *  S  T  Y  Y  I  E  K  K  K  K  R  E  I  D  K  Y  C  *  L  *  G  R  G  C  Q  C  *  V  R  S  I  I  L  *  N  L  N  K  G  I  V  S  S  S  T  S  S  S   </second_frame>
            <third_frame>   C  R  D  *  L  *  L  M  R  K  S  I  Y  F  L  H  F  K  K  N  A  L  V  *  L  G  T  K  F  K  K  R  K  K  T  F  *  F  C  G  F  K  V  L  P  K  R  K  *  R  H  S  F  L  N  G  G  S  I  I  L  C  M  Y  Y  *  Y  V  K  I  S  Y  S  C  I  S  Y  S  I  L  S  R  I  K  *  Y  I  D  S  L  I  S  Y  N  I  Y  T  S  Y  T  S  F  *  I  V  N  Q  M  S  Y  *  C  L  P  T  N  *  H  H  I  N  Y  T  I  I  N  K  *  I  T  F  S  L  *  I  D  I  I  T  S  L  V  W  L  F  L  L  L  Y  L  F  N  S  C  F  S  R  I  F  H  C  Y  E  V  L  I  I  *  R  K  K  R  R  E  R  L  I  N  T  V  N  C  R  V  G  G  V  N  V  R  F  D  R  L  F  Y  K  I  *  I  K  V  *  Y  H  L  Q  L  H  H  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04HBa0332P16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 24 chains have been computed
$ 
$ memory statistics:
$ 27864 bytes spliced alignments in total
$ 15 spliced alignments have been stored
$ 1857 bytes was the average size of a spliced alignment
$ 17216 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1721 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 28 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 08:41:40
-->
