<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:23:45"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6724" ref_strand="+" ref_description="SGN-M6724 C2_At1g27530 [cosii_markers]">
      <seq>gccattgttatcaaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacccggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaattttatcggactaatgatactcttccttttaatttatgaatcatattgaggaggctaagtttcatgttgttaaagcctcatgaaacctgaacattgagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23569" stop="25902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23869" g_stop="24235" g_length="367"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="429" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25602" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="859" r_length="430" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-M6724" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>859</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M6724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23869" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATAATGTCAAAGCCTCGTGAAACCTGAACATTGAGATACA</genome_strand>
        <mrna_strand>GCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTTATCGGACTAATGATACTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATGTTGTTAAAGCCTCATGAAACCTGAACATTGAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1544" ref_strand="+" ref_description="SGN-M1544 T0688 [cos_markers]">
      <seq>gccattgttatcaaaattctcctttaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23569" stop="24466"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23869" g_stop="24166" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-M1544" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>298</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M1544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23869" e_stop="24166"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGAT</genome_strand>
        <mrna_strand>GCCATTGTTATCAAAATTCTCCTTTAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>2</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="23869" PGL_stop="25602"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23869" e_stop="24235"/>
            <exon e_start="24547" e_stop="24608"/>
            <exon e_start="25173" e_stop="25602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.781" e_score="0.984"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="23869" e_stop="24235" e_length="367"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="24547" e_stop="24608" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.781">
            <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="25173" e_stop="25602" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23869" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23869" stop="24166"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG : ATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTG : CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATAATGTCAAAGCCTCGTGAAACCTGAACATTGAGATACA</gDNA_template>
            <first_frame> A  I  V  I  K  I  L  R  Q  F  R  D  G  G  L  G  S  E  Y  Q  I  N  P  Y  T  D  P  F  V  N  N  Q  S  W  S  T  *  R  R  G  M  D  T  A  A  E  G  R  I  Q  G  S  N  R  L  Y  I  N  E  Q  I  Q  R  *  *  L  V  P  Y  I  C  G  *  S  *  R  Y  S  L  E  G  E  V  L  V  C  A  *  P  S  Q  V  R  V  *  P  P  V  *  Y  P  C  Y  L  P  C  Y  R  S  *  T  *  V  A  *  T  *  W  Q  D  *  K   : D  V  Q  R  R  E  N  M  L  D  R  A  F  Q  A  A  M  G  K  E  L  :  P  Q  I  W  H  C  T  R  A  L  F  G  S  C  T  M  A  C  S  *  D  S  C  S  C  *  F  W  H  D  *  T  Q  R  *  C  G  H  I  Q  *  I  L  T  R  G  *  F  L  A  *  W  N  L  I  T  K  I  K  L  *  T  *  W  S  Y  L  K  V  *  F  S  P  H  F  E  E  S  *  F  H  V  M  *  A  G  *  T  R  L  F  E  M  Q  L  S  H  L  L  I  Y  F  N  V  L  Y  A  L  K  F  T  R  T  N  D  A  L  P  F  N  L  *  I  I  L  R  R  L  S  F  I  M  S  K  P  R  E  T  *  T  L  R  Y  </first_frame>
            <second_frame>  P  L  L  S  K  F  S  G  N  S  E  M  E  G  W  D  P  S  T  K  S  T  L  T  Q  I  P  L  L  T  I  K  A  G  P  R  D  G  A  A  W  T  Q  R  L  K  E  E  Y  K  A  L  I  A  Y  T  S  M  N  K  S  K  D  N  D  W  F  R  I  S  A  A  N  P  E  G  T  R  W  K  G  K  C  W  Y  V  H  N  L  L  K  Y  E  F  D  L  Q  F  D  I  P  V  T  Y  P  A  T  A  P  E  L  E  L  P  E  L  D  G  K  T  E  K  :  M  Y  R  G  G  K  I  C  L  T  V  H  F  K  P  L  W  A  K  N  C :   P  R  F  G  I  A  H  A  L  C  L  G  L  A  P  W  L  A  A  E  I  P  V  L  V  D  S  G  M  I  K  H  K  D  D  V  A  T  S  S  E  S  *  Q  G  D  D  F  *  H  D  G  T  *  S  P  R  *  N  C  K  H  N  G  V  T  *  K  C  N  F  P  L  T  L  R  S  H  S  F  M  L  C  K  P  G  E  P  G  S  L  R  C  N  C  H  I  C  *  F  I  L  T  C  F  M  P  S  N  L  L  G  L  M  M  L  F  L  L  I  Y  E  S  Y  *  G  G  *  V  S  *  C  Q  S  L  V  K  P  E  H  *  D  T </second_frame>
            <third_frame>   H  C  Y  Q  N  S  P  A  I  P  R  W  R  V  G  I  R  V  P  N  Q  P  L  H  R  S  L  C  *  Q  S  K  L  V  H  V  T  A  R  H  G  H  S  G  *  R  K  N  T  R  L  *  S  P  I  H  Q  *  T  N  P  K  I  M  I  G  S  V  Y  L  R  L  I  L  K  V  L  V  G  R  G  S  V  G  M  C  I  T  F  S  S  T  S  L  T  S  S  L  I  S  L  L  L  T  L  L  P  L  L  N  L  S  C  L  N  L  M  A  R  L  K  R :   C  T  E  E  G  K  Y  A  *  P  C  I  S  S  R  Y  G  Q  R  I   : A  P  D  L  A  L  H  T  R  F  V  W  V  L  H  H  G  L  Q  L  R  F  L  F  L  L  I  L  A  *  L  N  T  K  M  M  W  P  H  P  V  N  L  D  K  G  M  I  F  S  M  M  E  P  N  H  Q  D  K  T  V  N  I  M  E  L  L  E  S  V  I  F  P  S  L  *  G  V  I  V  S  C  Y  V  S  R  V  N  P  A  L  *  D  A  T  V  T  S  V  D  L  F  *  R  A  L  C  P  Q  I  Y  S  D  *  *  C  S  S  F  *  F  M  N  H  I  E  E  A  K  F  H  N  V  K  A  S  *  N  L  N  I  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23870" stop="24235"/>
                    <exon start="24547" stop="24608"/>
                    <exon start="25173" stop="25302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>555</number_coding_nucleotides>
                  <number_encoded_amino_acids>185</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PLLSKFSGNSEMEGWDPSTKSTLTQIPLLTIKAGPRDGAAWTQRLKEEYKALIAYTSMNKSKDNDWFRISAANPEGTRWKGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPELDGKTEKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPVLVDSGMIKHKDDVATSSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 11 chains have been computed
$ 
$ memory statistics:
$ 3808 bytes spliced alignments in total
$ 2 spliced alignments have been stored
$ 1904 bytes was the average size of a spliced alignment
$ 5592 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5592 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 11 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:23:48
-->
