<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 05:23:25"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U343105" ref_strand="+" ref_description="SGN-U343105        Tomato 200607 #1 [1 ESTs aligned]">
      <seq>aaaaccctgttgaaaattagattatctgggtaataagaagtgtgtcaatgttacaaaaaatagcaatacattatcaaacaatacttggaagtgtcagacactacaaggttatgatgccgtatgtacaatttaagagatcaaaaatttgctaaactttaatgttgtcttcgaaatgtacagtgcttggttaataacttgtccaaacagttcttatcccaaatggcgtgacaaatttatccaccgcttaatctaccatctgtcaatcttgtagaaatcagctaacttttacatctgttatctgaaccatcagttcagcattccaagcaaaatgccattttaactccacgttaaaaagctgggctcatgctgcaataacagcaaaaataagcagttgaacttgaactacagccattaccaagcatctgtcaactctccataaattcaaagtaataaatcaaacagcagtcactgccaaaattttggagtcagaagtcttatttggctgggcaatatgggatttactgagaggttatgacaaaggatcatcagagtaattctttctggcaaacttaaaaaatactattggcagggatcactgccataattgccagttactgacagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="11949" stop="13173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12249" g_stop="12873" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-U343105" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U343105" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="12249" e_stop="12873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATC-AAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTTTTTCTGGCAAACTTAAAAAATACTTTTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</genome_strand>
        <mrna_strand>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATCAAAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTAGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTCTTTCTGGCAAACTTAAAAAATACTATTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317946" ref_strand="+" ref_description="SGN-U317946        Tomato 200607 #1 [18 ESTs aligned] arabidopsis/peptide: | Symbol: None | expressed protein, Similar to gb:AF151884 CGI-126 protein from Homo sapiens. EST gb:Z18048 comes from this gene | chr1:9562586-9563926 REVERSE | Aliases: T17H3.3, T17H3_3(evalue: 2e-96, score=348) genbank/nr: gi|18396376|ref|NP_564289.1| expressed protein [Arabidopsis thaliana] gi|25334973|pir||D86400 hypothetical protein T17H3.3 - Arabidopsis thaliana gi|5668764|gb|AAD45991.1| Similar to gb|AF151884 CGI-126 protein from Homo sapiens.  EST gb|Z18048 comes from this gene. [Arabidopsis thaliana] gi|15451104|gb|AAK96823.1| Similar to CGI-126 protein [Arabidopsis thaliana] gi|21553822|gb|AAM62915.1| unknown [Arabidopsis thaliana](evalue: 2e-94, score=348)">
      <seq>ttggcggccaatcggccgaattgaaagcttgtatctgcccttgttatcaaaattctccggcaattccgagatggagggttgggatccgagtaccaaaacaacccttacacagatccctttgttaacaatcaaagctggtccacgtgacggcgcggcatggacacagcggctgaaggaagaatacaaggctctaatcgcctatacatcaatgaacaaatccaaagataatgattggttccgtatatctgcggctaatcctgaaggtactcgttggaaggggaagtgttggtatgtgcataaccttctcaagtacgagtttgacctccagtttgatatccctgttacttaccctgctaccgctcctgaacttgagttgcctgaacttgatggcaagactgaaaagatgtacagaggagggaaaatatgcttgactgtgcatttcaagccgctatgggcaaagaattgccccagatttggcattgcacacgcgctttgtttgggtcttgcaccatggcttgcagctgagattcctgttcttgttgattctggcatgattaaacacaaagatgatgtggccacatccagtgaatcttgacaaggggatgatttttagcatgatgaaacctaatcaccaagataaaactgtaaacttaatggagttacttgaaagtgtaattttcccctcactttgaggagtcatagtttcatgttatgtaagccgggtgaacccggctctttgagatgcaactgtcacatctgctgatttattttaacgtgctttatgccctcaaattttatcggactaatgatactcttccttttaatttatgaatcatattgaggaggctaagtttcatgttgttaaagcctcatgaaacctgaacattgagataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="+" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="23556" stop="25902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23854" g_stop="24235" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="403" r_length="382" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="24547" g_stop="24608" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="465" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564">
            <donor d_prob="0.996" d_score="0.98"/>
            <acceptor a_prob="0.781" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25173" g_stop="25602" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="895" r_length="430" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="+" ref_id="SGN-U317946" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U317946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23854" e_stop="24235"/>
          <exon e_start="24547" e_stop="24608"/>
          <exon e_start="25173" e_stop="25602"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAAGCTTGTATCTGCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAGGTTTGTTCTTTTTGCTATTTCCTTCATCTATATGATCATATGATGATGAATTTTTGTTGGTATGATTGGTTTTTGTTGTTGGTATACTTGAAGTTTAGCAAAACCCTAATTTATCTTGAAAGCAAATTATTTATAATGGGTCTGAATATAGTGGAATAGATAGATGCATTCCCTCTAGATTAGCCTATAGTCAAGTAGCTTAAATTCAGGTAACAAAACTTCCCTTATCTGTCAATCCATCATAACAAGCACAGATATTTATCAGAATCATGGCTTACTGATTGATTATTACTCTTTGTTTGATCATGTAGATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTGGTAATTATTTTCTCTTTGATTTGAACTGAAGCTGGATTGCTATGATGATTTTTGGTCAATTCATGATAGTACGTGTTGGTCTACTACATTTTTTTAACATATCGAGTTCTTTCACATGCACCCTGCTCTTCAAACACTTGTTTTCTTTTTTGATGTACTATCTATCGTCTGAGATAAAGGAGGATAGTTACAGACTAACTATAGGTTAACAATTAGTATTAAGATAGTCATAATATGATGGTTGGGATGTCTGAATAATGATTAATGGATATAGAAGATTCATTTGCCTATACTAAATTAATTCACTCTTTGACTTGGGTTTAGCTCTTCAATGATCAGACTGCTAGTAGGATCAAGTTCTGGTTGAGTAAAGCAAATGTTTGGTCAATTGAGAACTTAGTAGAGTTTGAATTAAATGAATATAATTTTTCTAAGACGTACTTATGTTTACCCAGGTTGATAAAGGAGAGTACTCTCTGCTTCATATTTTTCGTAGTTTAGTTTTCTGTATAATGGAACTGCAAGTGTCTTTCTACTTAAATCTAACTTTTGGTACTCATCTAGCCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATAATGTCAAAGCCTCGTGAAACCTGAACATTGAGATACA</genome_strand>
        <mrna_strand>TGAAAGCTTGTATCTGCCCTTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAAACAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG.......................................................................................................................................................................................................................................................................................................................ATGTACAGAGGAGGGAAAATATGCTTGACTGTGCATTTCAAGCCGCTATGGGCAAAGAATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGAAACCTAATCACCAAGATAAAACTGTAAACTTAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGCTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTTATCGGACTAATGATACTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATGTTGTTAAAGCCTCATGAAACCTGAACATTGAGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315793" ref_strand="+" ref_description="SGN-U315793        Tomato 200607 #1 [27 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative, similar to phosphoenolpyruvate carboxykinase (Lycopersicon esculentum) GI:16950587, SP:Q9SLZ0 Phosphoenolpyruvate carboxykinase (ATP) (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays}; contains Pfam profile PF01293: phosphoenolpyruvate carboxykinase | chr4:17802688-17806530 REVERSE | Aliases: T28I19.150, T28I19_150(evalue: 0, score=1033) genbank/nr: gi|16950587|gb|AAG01894.2| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum](evalue: 0, score=1259)">
      <seq>ggcgattggcggccaatcggccgaattgatccttccatggttcaaccttttcgcttaaaattttattcttcaaattcagctttttcagctattcttcactgattctgagaaaagatggcgtcgaacggagtcggaaatggagaattcagttttgataacaagaggaggactgggctgccgaagatccagacacagaagacagaggatgaaaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagtgcatcattggcgtcattgacacgagagacggggccaaaagtggtgaaaggagacccagcaaggcaagcggagacgccaaaggtgcaacaacctgttcatcaccaccacacccctgcccttaacatcagtgacagtggcctcaagttcacccacatcctttataatctctctcctgctgagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgtgtatccgacccactccagaagagctagaggattttggtactccggacttcacaatttacaatgctggtcaattcccatgtaaccgttacacccactatatgacttcctccactagcatagacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaagaaaggtcttttcggggtaatgcactatctaatgcctaagcgccaaattctctctctacactctggctgcaatatgggaaaagaaggagatgtagccctcttctttggattatcaggaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacattgaaggaggttgctatgccaaatgcatagaccttgcaagggagaaggagcctgatatctggaatgccatcaagtttggcactgtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaatctgtaacagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtggcaggaaccgaagatggtattaaggagcctacagcaacattttcagcatgttttggtgcagcatttatcatgcttcatccaaccaaatatgcagccatgctggctgagaagatgctgaaacatggagctacaggatggcttgtgaacactggctggtcaggtggaagttatggatcaggcagccgaatcaagttagcatacactaggaagatcatcgatgccatccactccggcgatcttctgaaagcagaatacaagaagaccgaggtatttgggctggagattccaactgcacttgagggagtaccttccgagattctggaccccgtgaacacttggcccgacaagaaggcacacaaggataccctgttgaagctgggaggcctatttaggaagaattttgaggtgttcacaaactacaagattggaagtgatagcaacctgactgaggagatcctggcagctggtccaaacttctaattgaagaaggatttgcctgagtgatggtttggcaaaatatgactttaaaatatcaaaagaaaaaaataagattagccagaaaacatgtgtaatattattttgtgtgttacattttatgtgttattggtccggaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="33244" stop="26998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32944" g_stop="32866" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="107" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32727" g_stop="32452" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="383" r_length="276" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31825" g_stop="31647" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="562" r_length="179" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="716" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="801" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="902" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.865" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="29211" g_stop="28913" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="903" r_stop="1201" r_length="299" r_score="0.997"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="28771" g_stop="28598" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1202" r_stop="1375" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.832" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="28507" g_stop="28442" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1376" r_stop="1441" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="9">
          <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93">
            <donor d_prob="0.926" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="10">
          <gDNA_exon_boundary g_start="28348" g_stop="28170" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="1442" r_stop="1620" r_length="179" r_score="0.994"/>
        </exon>
        <intron i_serial="10">
          <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="11">
          <gDNA_exon_boundary g_start="28081" g_stop="27912" g_length="170"/>
          <reference_exon_boundary r_type="cDNA" r_start="1621" r_stop="1790" r_length="170" r_score="0.994"/>
        </exon>
        <intron i_serial="11">
          <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="12">
          <gDNA_exon_boundary g_start="27830" g_stop="27662" g_length="169"/>
          <reference_exon_boundary r_type="cDNA" r_start="1791" r_stop="1959" r_length="169" r_score="1.000"/>
        </exon>
        <intron i_serial="12">
          <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="13">
          <gDNA_exon_boundary g_start="27575" g_stop="27294" g_length="282"/>
          <reference_exon_boundary r_type="cDNA" r_start="1960" r_stop="2241" r_length="282" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-U315793" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>2213</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32944" e_stop="32866"/>
          <exon e_start="32727" e_stop="32452"/>
          <exon e_start="31825" e_stop="31647"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="28913"/>
          <exon e_start="28771" e_stop="28598"/>
          <exon e_start="28507" e_stop="28442"/>
          <exon e_start="28348" e_stop="28170"/>
          <exon e_start="28081" e_stop="27912"/>
          <exon e_start="27830" e_stop="27662"/>
          <exon e_start="27575" e_stop="27294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTGGTAATTTTTCTTATCAATGCCCTGTTTTTTTTTTATAGTCGAAAGCGATTTCGCGATAGTTCTGAACTCGATTTGAGATTTGCATCTAATTTTGCATCGTGTTTATTGTTCATGAACGTGATTTTTTTTAATTTGCAGAGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATTGCTTCAAACATTTCACAGGTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAGGTAAAAGCACTCACCCAGAACATGTACCCAAATGATGTCCATTCAAACTATATATATAACGAATCTCTCTGTTATGAACAGTTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACTGTAAGTTAGCACACACTTCAGCATTGTCTAACTGCTACAATCTGCATATACCGTTTTATTAATGTGAAACTCATCTGTTGTTACAGTGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGATTAGCCAGAAAACATGTGTAATATTATTTTGTGTGTTACATTTTATGTGTTATTGGTCCGGAAGGAG</genome_strand>
        <mrna_strand>ATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG..........................................................................................................................................AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT....................................................................................................................................................................................................................GTGTATCCGACCCACTCCAGAAGAGCTAGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG..........................................................................................TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG.............................................................................................AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG........................................................................................GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTTGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG.................................................................................TTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT......................................................................................TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAAAAAAATAAGATTAGCCAGAAAACATGTGTAATATTATTTTGTGTGTTACATTTTATGTGTTATTGGTCCGGAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335321" ref_strand="+" ref_description="SGN-U335321        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative, similar to phosphoenolpyruvate carboxykinase (Lycopersicon esculentum) GI:16950587, SP:Q9SLZ0 Phosphoenolpyruvate carboxykinase (ATP) (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) {Zea mays}; contains Pfam profile PF01293: phosphoenolpyruvate carboxykinase | chr5:26283703-26286712 FORWARD | Aliases: None(evalue: 3e-49, score=191) genbank/nr: gi|17225488|gb|AAL37428.1| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum](evalue: 4e-49, score=197)">
      <seq>aaggagcctgatatctggaatgccatcaagtttggcactggtactttctgattctgacttgatcatcttgatgttatttcctgccaagtcacagggtgaagccaaattaataattttacgctctatgcagtgctggaaaacgtggtttttgaagaacatacccgagaagtggattatacagacaaatctgtaacaggtaacttgtgttgaatcgaacagagattttcatctcgatgtcttgaatcaattgatgttgctttatggctataatggtatggtttgattgcagagaacacccgggcagcatatccaattgaatacatcccaaatgctaaaataccatgtgttggtcctcatccaaagaatgtcattctccttgcatgtgatgcattcggcgtgcttccaccagtcagcaaattgaacttggcacagacaatgtaccacttcatcagtggctacacagctttggtatgtgctcacgaaatctgatgcctcacatattacatttgaactttcaagatgtgatgtaaagactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="28937" stop="27800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28637" g_stop="28100" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="538" r_length="538" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-U335321" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28637" e_stop="28100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATT</genome_strand>
        <mrna_strand>AAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCTGACTTGATCATCTTGATGTTATTTCCTGCCAAGTCACAGGGTGAAGCCAAATTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTTGTGTTGAATCGAACAGAGATTTTCATCTCGATGTCTTGAATCAATTGATGTTGCTTTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGTGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACGAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335322" ref_strand="+" ref_description="SGN-U335322        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative [Arabidopsis thaliana] (TAIR:At5g65690.1); similar to phosphoenolpyruvate carboxykinase [Flaveria pringlei] (GB:BAB43909.1); similar to phosphoenolpyruvate carboxykinase [Zoysia japonica] (GB:BAD88616.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43907.1); similar to PEPCK [Cucumis sativus] (GB:AAM00814.1); similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] (GB:AAG01894.2); contains InterPro domain Phosphoenolpyruvate carboxykinase (ATP) (InterPro:IPR001272); contains InterPro domain Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210) | chr4:17802688-17806533 REVERSE | Aliases: None(evalue: 9e-98, score=179) genbank/nr: gi|16950587|gb|AAG01894.2| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum](evalue: 2e-103, score=192)">
      <seq>ttgattacctatgctctttggagaaggtgtttgtgaatgatcgaggactaaactgggatccaaacaatcctctcaaagttacaattgtatatgccaaagcctatcactccttgtttatgcacaacatgtgtattccacccactccagaatagctagaggattttggaactccggactttacaatttacaatgctggtcaattgccatgtaaccgtgacacccactatttgacttcctccactagcataaacatcaatcttgctaggagggaaatggtcatccttggcacacagtatgctggggaaatgaaggaaaggtattttccgggtaatgcactatctaatgcctaagcgccaaattctttctctacactctggctgcaatatgggaaaagaaggagatgatgccctcttctttggatgataaggaactgggaagacaacactgtctactgatcacaacctgtacctgatcggagatgatgaacactgctggagtgatcatggtgtctcaaacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="30948" stop="28380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30648" g_stop="30623" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.996" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="127" r_length="101" r_score="0.881"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212">
            <donor d_prob="0.994" d_score="0.92"/>
            <acceptor a_prob="0.865" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29211" g_stop="28913" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="427" r_length="300" r_score="0.936"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141">
            <donor d_prob="0.453" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="28771" g_stop="28680" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="519" r_length="92" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-U335322" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30648" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="29211" e_stop="28913"/>
          <exon e_start="28771" e_stop="28680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAA-GAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATT</genome_strand>
        <mrna_strand>TTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCGAGGACTAAACTGGGATCCAAACAATCCTCTCAAAGTTACAATTGTATATGCCAAAGCCTATCACTCCTTGTTTATGCACAACAT....................................................................................................................................................................................................................GTGTATTCCACCCACTCCAGAATAGCTAGAGGATTTTGGAACTCCGGACTTTACAATTTACAATGCTGGTCAATTGCCATGTAACCGTGACACCCACTATTTGACTTCCTCCACTAGCATAAACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGGAAAGGTATTTTCCGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTTTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGATGCCCTCTTCTTTGGATGATAAG.............................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCTGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U315794" ref_strand="+" ref_description="SGN-U315794        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative [Arabidopsis thaliana] (TAIR:At5g65690.1); similar to phosphoenolpyruvate carboxykinase [Flaveria pringlei] (GB:BAB43909.1); similar to phosphoenolpyruvate carboxykinase [Zoysia japonica] (GB:BAD88616.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43907.1); similar to PEPCK [Cucumis sativus] (GB:AAM00814.1); similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] (GB:AAG01894.2); contains InterPro domain Phosphoenolpyruvate carboxykinase (ATP) (InterPro:IPR001272); contains InterPro domain Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210) | chr4:17802688-17806533 REVERSE | Aliases: None(evalue: 3e-58, score=221) genbank/nr: gi|16950587|gb|AAG01894.2| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum](evalue: 4e-61, score=236)">
      <seq>aaacgtggtttgccatgacgacagtgcaacgccggtgaaagctcagacgctggaggaattgcattctcttcagaagaagaaatcggcgccgactactccgatcaagtcccctcatgtattcggcgttgccgtttctgaagaggaacgacagaaacaacagctgcaatccattagagttgtatgagcaagctatcaagtatgagaagggatcattcatcacgtcaagcggtgctttagccacactttccggagccaaaactggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtgtttgtgaatgatcagttcctcaactgggatccaaacaatcgtatcaaagttagaattgtatctgccagagcctatcactccttgttcatgcacaacatgaactgggaagacaacactgtctactgatcacaaccggtacctgatcggagatgatgaacactgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="32925" stop="28407"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32625" g_stop="32452" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32451" i_stop="30985" i_length="1467">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30984" g_stop="30831" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="328" r_length="154" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30707" g_stop="30623" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="329" r_stop="413" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29524" g_stop="29424" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="514" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="28771" g_stop="28707" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="579" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-U315794" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U315794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32625" e_stop="32452"/>
          <exon e_start="30984" e_stop="30831"/>
          <exon e_start="30707" e_stop="30623"/>
          <exon e_start="29524" e_stop="29424"/>
          <exon e_start="28771" e_stop="28707"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAGGTAAAACGGCGTCGATTTTTTTTTTTGGCTGAAATTACTGAAAAAAGATATGATTATTTTTGTCGTATTAAATGTGTAGATTGGACTAAAATTTAACCTGTTTAAAACGAATTAAGTTAATAAATAATTGAATTATTTTTCAAAAATTATTTGCGTTTACATAGATTGTATTGAAAGCTAAAAATGAAATGAAAATACAATTTGCTAATTTTTACTAAGACGGTAGTCCTAATGTGTTGATTTGTCATTGTCACTTTTTTACTATCACGGACTCACTGTTTCGTGAAGATAAAAGGTACACTTAAAAAAAAAGAATAACATTAATAGTATGTTTGATCAAAATTTTAAAATTAATTTATTTGAAAAAGCAAATAATAGTATCAAATATCAAATTTACCTTACTTTATTTCTGCAAATACTTCAAAAATTAACTTGTATTCGTATTTGGCATGAATTTAAAATAATTTAGGCTTCAACACGAATATGAGACGCAGGAATGTATCTTTTGTAATTTTAGTAATATAAAATGTAGGTAAGCTTTTAGTAAAATCGTGACATGATGAAATTTACGAATTTTATTTAAAACTTTTATTTATTTATTTTTTCCATTTGTTGTGTAAAAATAGTGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTGGTAAATAATTTTACTATCTTTTCTTATGTTAGAAATATTAATTCTTACATTTAACTAATAAAGTTTCACTTTGAATAAAGTTTTTTACCCTCACTGTAACTCATCTTTCTTGACTAGTTCACATGTTTGACTCTACTAATTGTGCTTACCCACCCTCCATTTTATAGTTACGGTTCATGATTTAATTAAAACTCTTGTGCTACTTTCAAACTTTTGATACGTCATAAAATTATTTGATCGAATATTATTAGAATTGTTAGTAACTTTTATTCGATATATATAAGTTTTGGATGTTTTATTTACATCATACAACGACAGTACTTTTTCCTAGCCTATTTGATATACAGAGGGCGGAGCTAGCTGGGAGTTCATGGGTTTGGATGAACCTACTAGCTTTTTTGCAAATTTTACATTTATTTTTTAAAAAAACTAAATAAATATATGCATATTAACAAGCGAATTCCAAACAAAAATTGATTTATAATTCACCTTAATTTCTTTGGGAGTCATAAAATTACTTGGGTAATTTCTCTAATTAATTTTGAGTAATTCCTTAAAAGGTGAAAAAAATCAAAATTGTCCCTCAAAAAAGGGGGGTTTATTGCTTGTTTGTTGTATATAGTAAAATATACTTTTAATTTACGTGTTACTCCTTTTTGTAGAGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATCCAGATATTTTTGTTAAAAGTATTGAAAGATTGAGATCGCGATAAATCAGTCTTCGTGTAACATGTAAGTCGTAGAATCAGCCACTAGTACTTGCGTCTGGGTAGACTGCTAGGGTGTGCCCTTTCCTCAGACCATATGTAAACCCAGGATATGCTTCAAGCAGCAACCAGTCTTATAAAAAGATTGAGATCATAGTGATTTTGTTGATCTCTTCTCAACTGTTAATGTCTTGGATAATACAGATCACGGATGGTGAGACCTGCAATTAATTGTTATTGGAAAAAAAGCCACTAAATAAAATATTTAACAGGAAAGTAGTTCGATGGACACATCAATAAGAAGACTGATGATCAATTTATAGTGATGAAAACTACCTTCTTATCCTGACTATTTGCTACTTTCGCGGGTGGTCTACATTTCAGGTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACATGTAAGAAGCTGATCATGATTCTTCTTAAAACTCTCTGTTTTTACTTTCTTATGTTTTACAGGTCAGCAGATAAGTACTTTCTACTTTTACATATGCACGTTACCTATCTTTAGATTTTACATCCATTTAAGAGCCTTAGTGAATTAAAGGAATATCAAAAGATCATGTAAAACATGTTAGTAAGTGCAATTCAATAACCGGGTCGGTGACAGGTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAGGTAAAGTATAAAGGGATTGGTCCTCCCTTTATCGGAAAAGCAACAATAAGTGCCCCCTTATCGTTATATCTCACAGCAAAATGTGACATTGTTTCTATTCGATGCTCATGTTTCTCTTTTTGGACTTGTTTTTCATCTTAGGAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGC</genome_strand>
        <mrna_strand>AAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCAAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335323" ref_strand="+" ref_description="SGN-U335323        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative [Arabidopsis thaliana] (TAIR:At5g65690.1); similar to phosphoenolpyruvate carboxykinase [Flaveria pringlei] (GB:BAB43909.1); similar to phosphoenolpyruvate carboxykinase [Zoysia japonica] (GB:BAD88616.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43907.1); similar to PEPCK [Cucumis sativus] (GB:AAM00814.1); similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] (GB:AAG01894.2); contains InterPro domain Phosphoenolpyruvate carboxykinase (ATP) (InterPro:IPR001272); contains InterPro domain Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210) | chr4:17802688-17806533 REVERSE | Aliases: None(evalue: 5e-22, score=101) genbank/nr: gi|16950587|gb|AAG01894.2| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum](evalue: 2e-23, score=112)">
      <seq>tggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtatgttaaacaatattatcatttcatttcactaaagtctgcttccgttatcatttttttagatgcgctaaacttatcctaaagttgttaatgtcaacggttatagaaactatgcatatgttatgtttcccccttgcttagtgctgccgcgtcataccatgtttattttcttagttaaaagaacatgtaattagtacctcattaaaataatatcactcaataaataattaaattccagaatttgaggggagagtcatcttgtcattctttgataatctaaaggcgtgtcttattccccatgttaataaaataatgtatttgtatagtcgagctactattaaaaaaaaaattatttttgtttgtcgtggtgtatgaaatggctacagtagctgccataacatgtatgttacattgtctttatgtaattattattcttagtcccattagggaaattttgtgatccaatttctgtcatgatttaattatggctacaagacactcctgtttatggtgaaaacgaattttcctcatcttcccctaggaatggatatgtcacaataacatatctgtctagcctttaataaatatgtacacatgttctacaacaaacttgcattgagttttgggtgcaatatgcgtatctactacatacaaccttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31199" stop="29647"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30899" g_stop="30831" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="29947" g_length="761"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="815" r_length="746" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-U335323" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>830</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30899" e_stop="30831"/>
          <exon e_start="30707" e_stop="29947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAA-TATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATC</genome_strand>
        <mrna_strand>TGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAACTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCACTCAATAAATAATTAAATTCCAGAATTTGA-GGG-GAG------AGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATTATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGGGAAATTTTGTGATCCAATTTCTGTCATGA-T--T-----TAATTATGGCTACAAGACACTCCTGTTTATGGTGAAAACGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACATATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCATTGAGTTTTGGGTGCAATATGCGTATCTACTACATACAACCTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335324" ref_strand="+" ref_description="SGN-U335324        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | similar to phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative [Arabidopsis thaliana] (TAIR:At5g65690.1); similar to phosphoenolpyruvate carboxykinase [Flaveria pringlei] (GB:BAB43909.1); similar to phosphoenolpyruvate carboxykinase [Zoysia japonica] (GB:BAD88616.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43907.1); similar to PEPCK [Cucumis sativus] (GB:AAM00814.1); similar to phosphoenolpyruvate carboxykinase [Lycopersicon esculentum] (GB:AAG01894.2); contains InterPro domain Phosphoenolpyruvate carboxykinase (ATP) (InterPro:IPR001272); contains InterPro domain Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210) | chr4:17802688-17806533 REVERSE | Aliases: None(evalue: 6e-22, score=101) genbank/nr: gi|16950587|gb|AAG01894.2| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum](evalue: 3e-23, score=112)">
      <seq>ggccgttccccaagagacaaacgtgttgttagagacgaaaccactgaggacgacctttggtggggaaagggttcacccaatatcgaaatggacgaacagactttcttaatcaacagagaaagagctgttgattacctatgctctttggagaaggtatgttaaacaatattatcatttcatttcactaaagtctgcttccgttatcatttttttagatgcgctaaacttatcctaaagttgttaatgtcaacggttatagaaactatgcatatgttatgtttcccccttgcttagtgctgccgcgtcataccatgtttattttcttagttaaaagaacatgtaattagtacctcattaaaataatatcactcaataaataattaaattccagaatttgaggggagagtcatcttgtcattctttgataatctaaaggcgtgtcttattccccatgttaataaaataatgtatttgtatagtcgagctactattaaaaaaaaaattatttttgtttgtcgtggtgtatgaaatggctacagtagctgccataacatgtatgttacattgtctttatgtaattattattcttagtcccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLf0002F21-IhWOI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLf0002F21.1" temp_strand="-" temp_description="C04SLf0002F21.1  CU856536.1 htgs_phase:3 submitted_to_sgn_as:C04SLf0002F21 sequenced_by:sanger upload_account_name:uk">
        <position start="31198" stop="29870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30898" g_stop="30831" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.943" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30707" g_stop="30170" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="599" r_length="531" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLf0002F21.1" gen_strand="-" ref_id="SGN-U335324" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.012" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLf0002F21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30898" e_stop="30831"/>
          <exon e_start="30707" e_stop="30170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAAGTAAGTTATCTCCCCTGTTTTCCTTCATAGGACAGCAATTAGTATTTTCGACTCGAACTATATATAATTAATTGCACCTGTTCACAATCCACACTTCTTACGTTATGATTGTTGTACGAACAGGGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAA-TATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTA</genome_strand>
        <mrna_strand>GGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA...........................................................................................................................GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAACTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCACTCAATAAATAATTAAATTCCAGAATTTGA-GGG-GAG------AGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATTATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="12249" PGL_stop="12873"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="12249" e_stop="12873"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="12249" e_stop="12873" e_length="625"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12249" stop="12873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U343105" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACCCTGTTGAAAATTAGATTATCTGGGTAATAAGAAGTGTGTCAATGTTACAAAAAATAGCAATACATTATCAAACAATACTTGGAAGTGTCAGACACTACAAGGTTATGATGCCGTATGTACAATTTAAGAGATCAAAATTTGCTAAACTTTAATGTTGTCTTCGAAATGTACAGTGCTTGGTTAATAACTTGTCCAAACAGTTCTTATCCCAAATGGCGTGACAAATTTATCCACCGCTTAATCTACCATCTGTCAATCTTGTGGAAATCAGCTAACTTTTACATCTGTTATCTGAACCATCAGTTCAGCATTCCAAGCAAAATGCCATTTTAACTCCACGTTAAAAAGCTGGGCTCATGCTGCAATAACAGCAAAAATAAGCAGTTGAACTTGAACTACAGCCATTACCAAGCATCTGTCAACTCTCCATAAATTCAAAGTAATAAATCAAACAGCAGTCACTGCCAAAATTTTGGAGTCAGAAGTCTTATTTGGCTGGGCAATATGGGATTTACTGAGAGGTTATGACAAAGGATCATCAGAGTAATTTTTTCTGGCAAACTTAAAAAATACTTTTGGCAGGGATCACTGCCATAATTGCCAGTTACTGACAGAAAAT</gDNA_template>
            <first_frame> K  T  L  L  K  I  R  L  S  G  *  *  E  V  C  Q  C  Y  K  K  *  Q  Y  I  I  K  Q  Y  L  E  V  S  D  T  T  R  L  *  C  R  M  Y  N  L  R  D  Q  N  L  L  N  F  N  V  V  F  E  M  Y  S  A  W  L  I  T  C  P  N  S  S  Y  P  K  W  R  D  K  F  I  H  R  L  I  Y  H  L  S  I  L  W  K  S  A  N  F  Y  I  C  Y  L  N  H  Q  F  S  I  P  S  K  M  P  F  *  L  H  V  K  K  L  G  S  C  C  N  N  S  K  N  K  Q  L  N  L  N  Y  S  H  Y  Q  A  S  V  N  S  P  *  I  Q  S  N  K  S  N  S  S  H  C  Q  N  F  G  V  R  S  L  I  W  L  G  N  M  G  F  T  E  R  L  *  Q  R  I  I  R  V  I  F  S  G  K  L  K  K  Y  F  W  Q  G  S  L  P  *  L  P  V  T  D  R  K  </first_frame>
            <second_frame>  K  P  C  *  K  L  D  Y  L  G  N  K  K  C  V  N  V  T  K  N  S  N  T  L  S  N  N  T  W  K  C  Q  T  L  Q  G  Y  D  A  V  C  T  I  *  E  I  K  I  C  *  T  L  M  L  S  S  K  C  T  V  L  G  *  *  L  V  Q  T  V  L  I  P  N  G  V  T  N  L  S  T  A  *  S  T  I  C  Q  S  C  G  N  Q  L  T  F  T  S  V  I  *  T  I  S  S  A  F  Q  A  K  C  H  F  N  S  T  L  K  S  W  A  H  A  A  I  T  A  K  I  S  S  *  T  *  T  T  A  I  T  K  H  L  S  T  L  H  K  F  K  V  I  N  Q  T  A  V  T  A  K  I  L  E  S  E  V  L  F  G  W  A  I  W  D  L  L  R  G  Y  D  K  G  S  S  E  *  F  F  L  A  N  L  K  N  T  F  G  R  D  H  C  H  N  C  Q  L  L  T  E  N </second_frame>
            <third_frame>   N  P  V  E  N  *  I  I  W  V  I  R  S  V  S  M  L  Q  K  I  A  I  H  Y  Q  T  I  L  G  S  V  R  H  Y  K  V  M  M  P  Y  V  Q  F  K  R  S  K  F  A  K  L  *  C  C  L  R  N  V  Q  C  L  V  N  N  L  S  K  Q  F  L  S  Q  M  A  *  Q  I  Y  P  P  L  N  L  P  S  V  N  L  V  E  I  S  *  L  L  H  L  L  S  E  P  S  V  Q  H  S  K  Q  N  A  I  L  T  P  R  *  K  A  G  L  M  L  Q  *  Q  Q  K  *  A  V  E  L  E  L  Q  P  L  P  S  I  C  Q  L  S  I  N  S  K  *  *  I  K  Q  Q  S  L  P  K  F  W  S  Q  K  S  Y  L  A  G  Q  Y  G  I  Y  *  E  V  M  T  K  D  H  Q  S  N  F  F  W  Q  T  *  K  I  L  L  A  G  I  T  A  I  I  A  S  Y  *  Q  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="12363" stop="12587"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CRMYNLRDQNLLNFNVVFEMYSAWLITCPNSSYPKWRDKFIHRLIYHLSILWKSANFYICYLNHQFSIPSKMPF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="23854" PGL_stop="25602"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="23854" e_stop="24235"/>
            <exon e_start="24547" e_stop="24608"/>
            <exon e_start="25173" e_stop="25602"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.990"/>
          <exon-intron don_prob="0.996" acc_prob="0.781" e_score="0.984"/>
          <exon-only e_score="0.974"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="23854" e_stop="24235" e_length="382"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="24236" i_stop="24546" i_length="311"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="24547" e_stop="24608" e_length="62"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.781">
            <gDNA_intron_boundary i_start="24609" i_stop="25172" i_length="564"/>
          </intron>
          <exon e_serial="3" e_score="0.974">
            <gDNA_exon_boundary e_start="25173" e_stop="25602" e_length="430"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23854" stop="24235"/>
              <exon start="24547" stop="24608"/>
              <exon start="25173" stop="25602"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACAAAGCTTGTATCTGCCATTGTTATCAAAATTCTCCGGCAATTCCGAGATGGAGGGTTGGGATCCGAGTACCAAATCAACCCTTACACAGATCCCTTTGTTAACAATCAAAGCTGGTCCACGTGACGGCGCGGCATGGACACAGCGGCTGAAGGAAGAATACAAGGCTCTAATCGCCTATACATCAATGAACAAATCCAAAGATAATGATTGGTTCCGTATATCTGCGGCTAATCCTGAAGGTACTCGTTGGAAGGGGAAGTGTTGGTATGTGCATAACCTTCTCAAGTACGAGTTTGACCTCCAGTTTGATATCCCTGTTACTTACCCTGCTACCGCTCCTGAACTTGAGTTGCCTGAACTTGATGGCAAGACTGAAAAG : ATGTACAGAGGAGGGAAAATATGCTTGACCGTGCATTTCAAGCCGCTATGGGCAAAGAATTG : CCCCAGATTTGGCATTGCACACGCGCTTTGTTTGGGTCTTGCACCATGGCTTGCAGCTGAGATTCCTGTTCTTGTTGATTCTGGCATGATTAAACACAAAGATGATGTGGCCACATCCAGTGAATCTTGACAAGGGGATGATTTTTAGCATGATGGAACCTAATCACCAAGATAAAACTGTAAACATAATGGAGTTACTTGAAAGTGTAATTTTCCCCTCACTTTGAGGAGTCATAGTTTCATGTTATGTAAGCCGGGTGAACCCGGCTCTTTGAGATGCAACTGTCACATCTGTTGATTTATTTTAACGTGCTTTATGCCCTCAAATTTACTCGGACTAATGATGCTCTTCCTTTTAATTTATGAATCATATTGAGGAGGCTAAGTTTCATAATGTCAAAGCCTCGTGAAACCTGAACATTGAGATACA</gDNA_template>
            <first_frame> T  K  L  V  S  A  I  V  I  K  I  L  R  Q  F  R  D  G  G  L  G  S  E  Y  Q  I  N  P  Y  T  D  P  F  V  N  N  Q  S  W  S  T  *  R  R  G  M  D  T  A  A  E  G  R  I  Q  G  S  N  R  L  Y  I  N  E  Q  I  Q  R  *  *  L  V  P  Y  I  C  G  *  S  *  R  Y  S  L  E  G  E  V  L  V  C  A  *  P  S  Q  V  R  V  *  P  P  V  *  Y  P  C  Y  L  P  C  Y  R  S  *  T  *  V  A  *  T  *  W  Q  D  *  K   : D  V  Q  R  R  E  N  M  L  D  R  A  F  Q  A  A  M  G  K  E  L  :  P  Q  I  W  H  C  T  R  A  L  F  G  S  C  T  M  A  C  S  *  D  S  C  S  C  *  F  W  H  D  *  T  Q  R  *  C  G  H  I  Q  *  I  L  T  R  G  *  F  L  A  *  W  N  L  I  T  K  I  K  L  *  T  *  W  S  Y  L  K  V  *  F  S  P  H  F  E  E  S  *  F  H  V  M  *  A  G  *  T  R  L  F  E  M  Q  L  S  H  L  L  I  Y  F  N  V  L  Y  A  L  K  F  T  R  T  N  D  A  L  P  F  N  L  *  I  I  L  R  R  L  S  F  I  M  S  K  P  R  E  T  *  T  L  R  Y  </first_frame>
            <second_frame>  Q  S  L  Y  L  P  L  L  S  K  F  S  G  N  S  E  M  E  G  W  D  P  S  T  K  S  T  L  T  Q  I  P  L  L  T  I  K  A  G  P  R  D  G  A  A  W  T  Q  R  L  K  E  E  Y  K  A  L  I  A  Y  T  S  M  N  K  S  K  D  N  D  W  F  R  I  S  A  A  N  P  E  G  T  R  W  K  G  K  C  W  Y  V  H  N  L  L  K  Y  E  F  D  L  Q  F  D  I  P  V  T  Y  P  A  T  A  P  E  L  E  L  P  E  L  D  G  K  T  E  K  :  M  Y  R  G  G  K  I  C  L  T  V  H  F  K  P  L  W  A  K  N  C :   P  R  F  G  I  A  H  A  L  C  L  G  L  A  P  W  L  A  A  E  I  P  V  L  V  D  S  G  M  I  K  H  K  D  D  V  A  T  S  S  E  S  *  Q  G  D  D  F  *  H  D  G  T  *  S  P  R  *  N  C  K  H  N  G  V  T  *  K  C  N  F  P  L  T  L  R  S  H  S  F  M  L  C  K  P  G  E  P  G  S  L  R  C  N  C  H  I  C  *  F  I  L  T  C  F  M  P  S  N  L  L  G  L  M  M  L  F  L  L  I  Y  E  S  Y  *  G  G  *  V  S  *  C  Q  S  L  V  K  P  E  H  *  D  T </second_frame>
            <third_frame>   K  A  C  I  C  H  C  Y  Q  N  S  P  A  I  P  R  W  R  V  G  I  R  V  P  N  Q  P  L  H  R  S  L  C  *  Q  S  K  L  V  H  V  T  A  R  H  G  H  S  G  *  R  K  N  T  R  L  *  S  P  I  H  Q  *  T  N  P  K  I  M  I  G  S  V  Y  L  R  L  I  L  K  V  L  V  G  R  G  S  V  G  M  C  I  T  F  S  S  T  S  L  T  S  S  L  I  S  L  L  L  T  L  L  P  L  L  N  L  S  C  L  N  L  M  A  R  L  K  R :   C  T  E  E  G  K  Y  A  *  P  C  I  S  S  R  Y  G  Q  R  I   : A  P  D  L  A  L  H  T  R  F  V  W  V  L  H  H  G  L  Q  L  R  F  L  F  L  L  I  L  A  *  L  N  T  K  M  M  W  P  H  P  V  N  L  D  K  G  M  I  F  S  M  M  E  P  N  H  Q  D  K  T  V  N  I  M  E  L  L  E  S  V  I  F  P  S  L  *  G  V  I  V  S  C  Y  V  S  R  V  N  P  A  L  *  D  A  T  V  T  S  V  D  L  F  *  R  A  L  C  P  Q  I  Y  S  D  *  *  C  S  S  F  *  F  M  N  H  I  E  E  A  K  F  H  N  V  K  A  S  *  N  L  N  I  E  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23855" stop="24235"/>
                    <exon start="24547" stop="24608"/>
                    <exon start="25173" stop="25302"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSLYLPLLSKFSGNSEMEGWDPSTKSTLTQIPLLTIKAGPRDGAAWTQRLKEEYKALIAYTSMNKSKDNDWFRISAANPEGTRWKGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPELDGKTEKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPVLVDSGMIKHKDDVATSSES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="32944" PGL_stop="27294"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32944" e_stop="32866"/>
            <exon e_start="32727" e_stop="32452"/>
            <exon e_start="31825" e_stop="31647"/>
            <exon e_start="30984" e_stop="30831"/>
            <exon e_start="30707" e_stop="30623"/>
            <exon e_start="29524" e_stop="29424"/>
            <exon e_start="29211" e_stop="28913"/>
            <exon e_start="28771" e_stop="28598"/>
            <exon e_start="28507" e_stop="28442"/>
            <exon e_start="28348" e_stop="28170"/>
            <exon e_start="28081" e_stop="27912"/>
            <exon e_start="27830" e_stop="27662"/>
            <exon e_start="27575" e_stop="27294"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.865" e_score="1.000"/>
          <exon-intron don_prob="0.453" acc_prob="0.997" e_score="0.997"/>
          <exon-intron don_prob="0.996" acc_prob="0.832" e_score="1.000"/>
          <exon-intron don_prob="0.926" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.985" e_score="0.994"/>
          <exon-intron don_prob="0.974" acc_prob="0.985" e_score="0.994"/>
          <exon-intron don_prob="0.996" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32944" e_stop="32866" e_length="79"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32865" i_stop="32728" i_length="138"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="32727" e_stop="32452" e_length="276"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="1.000">
            <gDNA_intron_boundary i_start="32451" i_stop="31826" i_length="626"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31825" e_stop="31647" e_length="179"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.996">
            <gDNA_intron_boundary i_start="31646" i_stop="30985" i_length="662"/>
          </intron>
          <exon e_serial="4" e_score="0.994">
            <gDNA_exon_boundary e_start="30984" e_stop="30831" e_length="154"/>
          </exon>
          <intron i_serial="4" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="30707" e_stop="30623" e_length="85"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="29524" e_stop="29424" e_length="101"/>
          </exon>
          <intron i_serial="6" don_prob="0.994" acc_prob="0.865">
            <gDNA_intron_boundary i_start="29423" i_stop="29212" i_length="212"/>
          </intron>
          <exon e_serial="7" e_score="0.997">
            <gDNA_exon_boundary e_start="29211" e_stop="28913" e_length="299"/>
          </exon>
          <intron i_serial="7" don_prob="0.453" acc_prob="0.997">
            <gDNA_intron_boundary i_start="28912" i_stop="28772" i_length="141"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="28771" e_stop="28598" e_length="174"/>
          </exon>
          <intron i_serial="8" don_prob="0.996" acc_prob="0.832">
            <gDNA_intron_boundary i_start="28597" i_stop="28508" i_length="90"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="28507" e_stop="28442" e_length="66"/>
          </exon>
          <intron i_serial="9" don_prob="0.926" acc_prob="0.998">
            <gDNA_intron_boundary i_start="28441" i_stop="28349" i_length="93"/>
          </intron>
          <exon e_serial="10" e_score="0.994">
            <gDNA_exon_boundary e_start="28348" e_stop="28170" e_length="179"/>
          </exon>
          <intron i_serial="10" don_prob="0.989" acc_prob="0.985">
            <gDNA_intron_boundary i_start="28169" i_stop="28082" i_length="88"/>
          </intron>
          <exon e_serial="11" e_score="0.994">
            <gDNA_exon_boundary e_start="28081" e_stop="27912" e_length="170"/>
          </exon>
          <intron i_serial="11" don_prob="0.974" acc_prob="0.985">
            <gDNA_intron_boundary i_start="27911" i_stop="27831" i_length="81"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="27830" e_stop="27662" e_length="169"/>
          </exon>
          <intron i_serial="12" don_prob="0.996" acc_prob="0.997">
            <gDNA_intron_boundary i_start="27661" i_stop="27576" i_length="86"/>
          </intron>
          <exon e_serial="13" e_score="0.986">
            <gDNA_exon_boundary e_start="27575" e_stop="27294" e_length="282"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32944" stop="32866"/>
              <exon start="32727" stop="32452"/>
              <exon start="31825" stop="31647"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28598"/>
              <exon start="28507" stop="28442"/>
              <exon start="28348" stop="28170"/>
              <exon start="28081" stop="27912"/>
              <exon start="27830" stop="27662"/>
              <exon start="27575" stop="27294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30648" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="29211" stop="28913"/>
              <exon start="28771" stop="28680"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335322" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCTTCCATGGTTCAACCTTTTCGCTTAAAATTTTATTCTTCAAATTCAGCTTTTTCAGCTATTCTTCACTGATTCTG : AGAAAAGATGGCGTCGAACGGAGTCGGAAATGGAGAATTCAGTTTTGATAACAAGAGGAGGACTGGGCTGCCGAAGATCCAGACACAGAAGACAGAGGATGAAAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG : TGCATCATTGGCGTCATTGACACGAGAGACGGGGCCAAAAGTGGTGAAAGGAGACCCAGCAAGGCAAGCGGAGACGCCAAAGGTGCAACAACCTGTTCATCACCACCACACCCCTGCCCTTAACATCAGTGACAGTGGCCTCAAGTTCACCCACATCCTTTATAATCTCTCTCCTGCTG : AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG : GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT : GTGTATCCGACCCACTCCAGAAGAGCTGGAGGATTTTGGTACTCCGGACTTCACAATTTACAATGCTGGTCAATTCCCATGTAACCGTTACACCCACTATATGACTTCCTCCACTAGCATAGACATCAATCTTGCTAGGAGGGAAATGGTCATCCTTGGCACACAGTATGCTGGGGAAATGAAGAAAGGTCTTTTCGGGGTAATGCACTATCTAATGCCTAAGCGCCAAATTCTCTCTCTACACTCTGGCTGCAATATGGGAAAAGAAGGAGATGTAGCCCTCTTCTTTGGATTATCAG : GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGCTGGAGTGATCATGGTGTCTCAAACATTGAAGGAGGTTGCTATGCCAAATGCATAGACCTTGCAAGGGAGAAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTG : TGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAG : AGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTG : GTGGCAGGAACCGAAGATGGTATTAAGGAGCCTACAGCAACATTTTCAGCATGTTTCGGTGCAGCATTTATCATGCTTCATCCAACCAAATATGCAGCCATGCTGGCTGAGAAGATGCTGAAACATGGAGCTACAGGATGGCTTGTGAACACTGGCTGGTCAGGTGGAAG : TTATGGATCAGGCAGCCGAATCAAGTTAGCATACACTAGGAAGATCATCGATGCCATCCACTCCGGCGATCTTCTGAAAGCAGAATACAAGAAGACCGAGGTATTTGGGCTGGAGATTCCAACTGCACTTGAGGGAGTACCTTCCGAGATTCTGGACCCCGTGAACACT : TGGCCCGACAAGAAGGCACACAAGGATACCCTGTTGAAGCTGGGAGGCCTATTTAGGAAGAATTTTGAGGTGTTCACAAACTACAAGATTGGAAGTGATAGCAACCTGACTGAGGAGATCCTGGCAGCTGGTCCAAACTTCTAATTGAAGAAGGATTTGCCTGAGTGATGGTTTGGCAAAATATGACTTTAAAATATCAAAAGAGAAAAATAAGATTAGCCAGAAAACATGTGTAATATTATTTTGTGTGTTACATTTTATGTGTTATTGGTCCGGAAGGAG</gDNA_template>
            <first_frame> I  L  P  W  F  N  L  F  A  *  N  F  I  L  Q  I  Q  L  F  Q  L  F  F  T  D  S   : E  K  R  W  R  R  T  E  S  E  M  E  N  S  V  L  I  T  R  G  G  L  G  C  R  R  S  R  H  R  R  Q  R  M  K  T  W  F  A  M  T  T  V  Q  R  R  *  K  L  R  R  W  R  N  C  I  L  F  R  R  R  N  R  R  R  L  L  R  S  S  P  L  M  Y  S  A  L  P  F  L  K  R  N  D  R  N  N  S  C  N  P  L   : V  H  H  W  R  H  *  H  E  R  R  G  Q  K  W  *  K  E  T  Q  Q  G  K  R  R  R  Q  R  C  N  N  L  F  I  T  T  T  P  L  P  L  T  S  V  T  V  A  S  S  S  P  T  S  F  I  I  S  L  L  L  :  S  C  M  S  K  L  S  S  M  R  R  D  H  S  S  R  R  A  V  L  *  P  H  F  P  E  P  K  L  A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : R  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R :   C  L  *  M  I  S  S  S  T  G  I  Q  T  I  V  S  K  L  E  L  Y  L  P  E  P  I  T  P  C  S  C  T  T   : C  V  S  D  P  L  Q  K  S  W  R  I  L  V  L  R  T  S  Q  F  T  M  L  V  N  S  H  V  T  V  T  P  T  I  *  L  P  P  L  A  *  T  S  I  L  L  G  G  K  W  S  S  L  A  H  S  M  L  G  K  *  R  K  V  F  S  G  *  C  T  I  *  C  L  S  A  K  F  S  L  Y  T  L  A  A  I  W  E  K  K  E  M  *  P  S  S  L  D  Y  Q  :  E  L  G  R  Q  H  C  L  L  I  T  T  G  T  *  S  E  M  M  N  T  A  G  V  I  M  V  S  Q  T  L  K  E  V  A  M  P  N  A  *  T  L  Q  G  R  R  S  L  I  S  G  M  P  S  S  L  A  L  :  C  W  K  T  W  F  L  K  N  I  P  E  K  W  I  I  Q  T  N  L  *  Q  :  R  T  P  G  Q  H  I  Q  L  N  T  S  Q  M  L  K  Y  H  A  L  V  L  I  Q  R  M  S  F  S  L  H  V  M  H  S  A  C  F  H  Q  S  A  N  *  T  W  H  R  Q  C  T  T  S  S  V  A  T  Q  L  W :   W  Q  E  P  K  M  V  L  R  S  L  Q  Q  H  F  Q  H  V  S  V  Q  H  L  S  C  F  I  Q  P  N  M  Q  P  C  W  L  R  R  C  *  N  M  E  L  Q  D  G  L  *  T  L  A  G  Q  V  E   : V  M  D  Q  A  A  E  S  S  *  H  T  L  G  R  S  S  M  P  S  T  P  A  I  F  *  K  Q  N  T  R  R  P  R  Y  L  G  W  R  F  Q  L  H  L  R  E  Y  L  P  R  F  W  T  P  *  T  L :   G  P  T  R  R  H  T  R  I  P  C  *  S  W  E  A  Y  L  G  R  I  L  R  C  S  Q  T  T  R  L  E  V  I  A  T  *  L  R  R  S  W  Q  L  V  Q  T  S  N  *  R  R  I  C  L  S  D  G  L  A  K  Y  D  F  K  I  S  K  E  K  N  K  I  S  Q  K  T  C  V  I  L  F  C  V  L  H  F  M  C  Y  W  S  G  R   </first_frame>
            <second_frame>  S  F  H  G  S  T  F  S  L  K  I  L  F  F  K  F  S  F  F  S  Y  S  S  L  I  L  :  R  K  D  G  V  E  R  S  R  K  W  R  I  Q  F  *  *  Q  E  E  D  W  A  A  E  D  P  D  T  E  D  R  G  *  K  R  G  L  P  *  R  Q  C  N  A  G  E  S  S  D  A  G  G  I  A  F  S  S  E  E  E  I  G  A  D  Y  S  D  Q  V  P  S  C  I  R  R  C  R  F  *  R  G  T  T  E  T  T  A  A  I  H  *  :  C  I  I  G  V  I  D  T  R  D  G  A  K  S  G  E  R  R  P  S  K  A  S  G  D  A  K  G  A  T  T  C  S  S  P  P  H  P  C  P  *  H  Q  *  Q  W  P  Q  V  H  P  H  P  L  *  S  L  S  C  * :   V  V  *  A  S  Y  Q  V  *  E  G  I  I  H  H  V  E  R  C  F  S  H  T  F  R  S  Q  N  W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E   : G  V  C  E  *  S  V  P  Q  L  G  S  K  Q  S  Y  Q  S  *  N  C  I  C  Q  S  L  S  L  L  V  H  A  Q  H  :  V  Y  P  T  H  S  R  R  A  G  G  F  W  Y  S  G  L  H  N  L  Q  C  W  S  I  P  M  *  P  L  H  P  L  Y  D  F  L  H  *  H  R  H  Q  S  C  *  E  G  N  G  H  P  W  H  T  V  C  W  G  N  E  E  R  S  F  R  G  N  A  L  S  N  A  *  A  P  N  S  L  S  T  L  W  L  Q  Y  G  K  R  R  R  C  S  P  L  L  W  I  I  R :   N  W  E  D  N  T  V  Y  *  S  Q  P  V  P  D  R  R  *  *  T  L  L  E  *  S  W  C  L  K  H  *  R  R  L  L  C  Q  M  H  R  P  C  K  G  E  G  A  *  Y  L  E  C  H  Q  V  W  H  C :   A  G  K  R  G  F  *  R  T  Y  P  R  S  G  L  Y  R  Q  I  C  N  R :   E  H  P  G  S  I  S  N  *  I  H  P  K  C  *  N  T  M  R  W  S  S  S  K  E  C  H  S  P  C  M  *  C  I  R  R  A  S  T  S  Q  Q  I  E  L  G  T  D  N  V  P  L  H  Q  W  L  H  S  F   : G  G  R  N  R  R  W  Y  *  G  A  Y  S  N  I  F  S  M  F  R  C  S  I  Y  H  A  S  S  N  Q  I  C  S  H  A  G  *  E  D  A  E  T  W  S  Y  R  M  A  C  E  H  W  L  V  R  W  K  :  L  W  I  R  Q  P  N  Q  V  S  I  H  *  E  D  H  R  C  H  P  L  R  R  S  S  E  S  R  I  Q  E  D  R  G  I  W  A  G  D  S  N  C  T  *  G  S  T  F  R  D  S  G  P  R  E  H   : L  A  R  Q  E  G  T  Q  G  Y  P  V  E  A  G  R  P  I  *  E  E  F  *  G  V  H  K  L  Q  D  W  K  *  *  Q  P  D  *  G  D  P  G  S  W  S  K  L  L  I  E  E  G  F  A  *  V  M  V  W  Q  N  M  T  L  K  Y  Q  K  R  K  I  R  L  A  R  K  H  V  *  Y  Y  F  V  C  Y  I  L  C  V  I  G  P  E  G  </second_frame>
            <third_frame>   P  S  M  V  Q  P  F  R  L  K  F  Y  S  S  N  S  A  F  S  A  I  L  H  *  F  * :   E  K  M  A  S  N  G  V  G  N  G  E  F  S  F  D  N  K  R  R  T  G  L  P  K  I  Q  T  Q  K  T  E  D  E  N  V  V  C  H  D  D  S  A  T  P  V  K  A  Q  T  L  E  E  L  H  S  L  Q  K  K  K  S  A  P  T  T  P  I  K  S  P  H  V  F  G  V  A  V  S  E  E  E  R  Q  K  Q  Q  L  Q  S  I  S :   A  S  L  A  S  L  T  R  E  T  G  P  K  V  V  K  G  D  P  A  R  Q  A  E  T  P  K  V  Q  Q  P  V  H  H  H  H  T  P  A  L  N  I  S  D  S  G  L  K  F  T  H  I  L  Y  N  L  S  P  A   : E  L  Y  E  Q  A  I  K  Y  E  K  G  S  F  I  T  S  S  G  A  L  A  T  L  S  G  A  K  T  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  :  V  F  V  N  D  Q  F  L  N  W  D  P  N  N  R  I  K  V  R  I  V  S  A  R  A  Y  H  S  L  F  M  H  N  M :   C  I  R  P  T  P  E  E  L  E  D  F  G  T  P  D  F  T  I  Y  N  A  G  Q  F  P  C  N  R  Y  T  H  Y  M  T  S  S  T  S  I  D  I  N  L  A  R  R  E  M  V  I  L  G  T  Q  Y  A  G  E  M  K  K  G  L  F  G  V  M  H  Y  L  M  P  K  R  Q  I  L  S  L  H  S  G  C  N  M  G  K  E  G  D  V  A  L  F  F  G  L  S   : G  T  G  K  T  T  L  S  T  D  H  N  R  Y  L  I  G  D  D  E  H  C  W  S  D  H  G  V  S  N  I  E  G  G  C  Y  A  K  C  I  D  L  A  R  E  K  E  P  D  I  W  N  A  I  K  F  G  T   : V  L  E  N  V  V  F  E  E  H  T  R  E  V  D  Y  T  D  K  S  V  T   : E  N  T  R  A  A  Y  P  I  E  Y  I  P  N  A  K  I  P  C  V  G  P  H  P  K  N  V  I  L  L  A  C  D  A  F  G  V  L  P  P  V  S  K  L  N  L  A  Q  T  M  Y  H  F  I  S  G  Y  T  A  L  :  V  A  G  T  E  D  G  I  K  E  P  T  A  T  F  S  A  C  F  G  A  A  F  I  M  L  H  P  T  K  Y  A  A  M  L  A  E  K  M  L  K  H  G  A  T  G  W  L  V  N  T  G  W  S  G  G  S :   Y  G  S  G  S  R  I  K  L  A  Y  T  R  K  I  I  D  A  I  H  S  G  D  L  L  K  A  E  Y  K  K  T  E  V  F  G  L  E  I  P  T  A  L  E  G  V  P  S  E  I  L  D  P  V  N  T  :  W  P  D  K  K  A  H  K  D  T  L  L  K  L  G  G  L  F  R  K  N  F  E  V  F  T  N  Y  K  I  G  S  D  S  N  L  T  E  E  I  L  A  A  G  P  N  F  *  L  K  K  D  L  P  E  *  W  F  G  K  I  *  L  *  N  I  K  R  E  K  *  D  *  P  E  N  M  C  N  I  I  L  C  V  T  F  Y  V  L  L  V  R  K  E </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32726" stop="32452"/>
                    <exon start="31825" stop="31647"/>
                    <exon start="30984" stop="30831"/>
                    <exon start="30707" stop="30623"/>
                    <exon start="29524" stop="29424"/>
                    <exon start="29211" stop="28913"/>
                    <exon start="28771" stop="28598"/>
                    <exon start="28507" stop="28442"/>
                    <exon start="28348" stop="28170"/>
                    <exon start="28081" stop="27912"/>
                    <exon start="27830" stop="27662"/>
                    <exon start="27575" stop="27432"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1992</number_coding_nucleotides>
                  <number_encoded_amino_acids>664</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKMASNGVGNGEFSFDNKRRTGLPKIQTQKTEDENVVCHDDSATPVKAQTLEELHSLQKKKSAPTTPIKSPHVFGVAVSEEERQKQQLQSISASLASLTRETGPKVVKGDPARQAETPKVQQPVHHHHTPALNISDSGLKFTHILYNLSPAELYEQAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVRDETTEDDLWWGKGSPNIEMDEQTFLINRERAVDYLCSLEKVFVNDQFLNWDPNNRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTPDFTIYNAGQFPCNRYTHYMTSSTSIDINLARREMVILGTQYAGEMKKGLFGVMHYLMPKRQILSLHSGCNMGKEGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWSDHGVSNIEGGCYAKCIDLAREKEPDIWNAIKFGTVLENVVFEEHTREVDYTDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMLKHGATGWLVNTGWSGGSYGSGSRIKLAYTRKIIDAIHSGDLLKAEYKKTEVFGLEIPTALEGVPSEILDPVNTWPDKKAHKDTLLKLGGLFRKNFEVFTNYKIGSDSNLTEEILAAGPNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="30899" e_stop="30831"/>
            <exon e_start="30707" e_stop="29947"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="1.000"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30899" e_stop="30831" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="30707" e_stop="29947" e_length="761"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30899" stop="30831"/>
              <exon start="30707" stop="29947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30898" stop="30831"/>
              <exon start="30707" stop="30170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335324" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAGGTATGTTAAACAATATTATCATTTCATTTCACTAAAGTCTGCTTCCGTTATCATTTTTTTAGATGCGCTAAAGTTATCCTAAAGTTGTTAATGTCAACGGTTATAGAAACTATGCATATGTTATGTTTCCCCCTTGCTTAGTGCTGCCGCGTCATACCATGTTTATTTTCTTAGTTAAAAGAACATGTAATTAGTACCTCATTAAAATAATATCAGTCAATAAATAATTAAATTCCAGAATTTGAGGGGAGAGACAAATAGTCATCTTGTCATTCTTTGATAATCTAAAGGCGTGTCTTATTCCCCATGTTAATAAAATAATGTATTTGTATAGTCGAGCTACTATTAAAAAAAAAATATTTTTGTTTGTCGTGGTGTATGAAATGGCTACAGTAGCTGCCATAACATGTATGTTACATTGTCTTTATGTAATTATTATTCTTAGTCCCATTAGAGAAATTTTGTGATCCAATTTCTGTCATGATTCATGGGCCTAATTATGGCTACAAGACACTCCTGTTTATGGTGAAACGGAATTTTCCTCATCTTCCCCTAGGAATGGATATGTCACAATAACGTATCTGTCTAGCCTTTAATAAATATGTACACATGTTCTACAACAAACTTGCACTGAGTTTTGGTGCCAATATGCGTATCTACTACATACAAACTTATC</gDNA_template>
            <first_frame> W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E  G  M  L  N  N  I  I  I  S  F  H  *  S  L  L  P  L  S  F  F  *  M  R  *  S  Y  P  K  V  V  N  V  N  G  Y  R  N  Y  A  Y  V  M  F  P  P  C  L  V  L  P  R  H  T  M  F  I  F  L  V  K  R  T  C  N  *  Y  L  I  K  I  I  S  V  N  K  *  L  N  S  R  I  *  G  E  R  Q  I  V  I  L  S  F  F  D  N  L  K  A  C  L  I  P  H  V  N  K  I  M  Y  L  Y  S  R  A  T  I  K  K  K  I  F  L  F  V  V  V  Y  E  M  A  T  V  A  A  I  T  C  M  L  H  C  L  Y  V  I  I  I  L  S  P  I  R  E  I  L  *  S  N  F  C  H  D  S  W  A  *  L  W  L  Q  D  T  P  V  Y  G  E  T  E  F  S  S  S  S  P  R  N  G  Y  V  T  I  T  Y  L  S  S  L  *  *  I  C  T  H  V  L  Q  Q  T  C  T  E  F  W  C  Q  Y  A  Y  L  L  H  T  N  L   </first_frame>
            <second_frame>  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  V  C  *  T  I  L  S  F  H  F  T  K  V  C  F  R  Y  H  F  F  R  C  A  K  V  I  L  K  L  L  M  S  T  V  I  E  T  M  H  M  L  C  F  P  L  A  *  C  C  R  V  I  P  C  L  F  S  *  L  K  E  H  V  I  S  T  S  L  K  *  Y  Q  S  I  N  N  *  I  P  E  F  E  G  R  D  K  *  S  S  C  H  S  L  I  I  *  R  R  V  L  F  P  M  L  I  K  *  C  I  C  I  V  E  L  L  L  K  K  K  Y  F  C  L  S  W  C  M  K  W  L  Q  *  L  P  *  H  V  C  Y  I  V  F  M  *  L  L  F  L  V  P  L  E  K  F  C  D  P  I  S  V  M  I  H  G  P  N  Y  G  Y  K  T  L  L  F  M  V  K  R  N  F  P  H  L  P  L  G  M  D  M  S  Q  *  R  I  C  L  A  F  N  K  Y  V  H  M  F  Y  N  K  L  A  L  S  F  G  A  N  M  R  I  Y  Y  I  Q  T  Y  </second_frame>
            <third_frame>   A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : R  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R  Y  V  K  Q  Y  Y  H  F  I  S  L  K  S  A  S  V  I  I  F  L  D  A  L  K  L  S  *  S  C  *  C  Q  R  L  *  K  L  C  I  C  Y  V  S  P  L  L  S  A  A  A  S  Y  H  V  Y  F  L  S  *  K  N  M  *  L  V  P  H  *  N  N  I  S  Q  *  I  I  K  F  Q  N  L  R  G  E  T  N  S  H  L  V  I  L  *  *  S  K  G  V  S  Y  S  P  C  *  *  N  N  V  F  V  *  S  S  Y  Y  *  K  K  N  I  F  V  C  R  G  V  *  N  G  Y  S  S  C  H  N  M  Y  V  T  L  S  L  C  N  Y  Y  S  *  S  H  *  R  N  F  V  I  Q  F  L  S  *  F  M  G  L  I  M  A  T  R  H  S  C  L  W  *  N  G  I  F  L  I  F  P  *  E  W  I  C  H  N  N  V  S  V  *  P  L  I  N  M  Y  T  C  S  T  T  N  L  H  *  V  L  V  P  I  C  V  S  T  T  Y  K  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30377" stop="30156"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GERQIVILSFFDNLKACLIPHVNKIMYLYSRATIKKKIFLFVVVYEMATVAAITCMLHCLYVIIILSPIREIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="28637" e_stop="28100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="28637" e_stop="28100" e_length="538"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28637" stop="28100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335321" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGGAGCCTGATATCTGGAATGCCATCAAGTTTGGCACTGGTACTTTCTGATTCCGACTTGATCATCTTGATGTTATTTCCTGCCAAGTTACAGGGTGAAGCCAACTTAATAATTTTACGCTCTATGCAGTGCTGGAAAACGTGGTTTTTGAAGAACATACCCGAGAAGTGGATTATACAGACAAATCTGTAACAGGTAACTAGTGTTGAATCGAACAGAGATTTTCATCTCAAAGTCTTGAATCAATTGATGTTGCTCTATGGCTATAATGGTATGGTTTGATTGCAGAGAACACCCGGGCAGCATATCCAATTGAATACATCCCAAATGCTAAAATACCATGCGTTGGTCCTCATCCAAAGAATGTCATTCTCCTTGCATGTGATGCATTCGGCGTGCTTCCACCAGTCAGCAAATTGAACTTGGCACAGACAATGTACCACTTCATCAGTGGCTACACAGCTTTGGTATGTGCTCACAAAATCTGATGCCTCACATATTACATTTGAACTTTCAAGATGTGATGTAAAGACTATT</gDNA_template>
            <first_frame> K  E  P  D  I  W  N  A  I  K  F  G  T  G  T  F  *  F  R  L  D  H  L  D  V  I  S  C  Q  V  T  G  *  S  Q  L  N  N  F  T  L  Y  A  V  L  E  N  V  V  F  E  E  H  T  R  E  V  D  Y  T  D  K  S  V  T  G  N  *  C  *  I  E  Q  R  F  S  S  Q  S  L  E  S  I  D  V  A  L  W  L  *  W  Y  G  L  I  A  E  N  T  R  A  A  Y  P  I  E  Y  I  P  N  A  K  I  P  C  V  G  P  H  P  K  N  V  I  L  L  A  C  D  A  F  G  V  L  P  P  V  S  K  L  N  L  A  Q  T  M  Y  H  F  I  S  G  Y  T  A  L  V  C  A  H  K  I  *  C  L  T  Y  Y  I  *  T  F  K  M  *  C  K  D  Y  </first_frame>
            <second_frame>  R  S  L  I  S  G  M  P  S  S  L  A  L  V  L  S  D  S  D  L  I  I  L  M  L  F  P  A  K  L  Q  G  E  A  N  L  I  I  L  R  S  M  Q  C  W  K  T  W  F  L  K  N  I  P  E  K  W  I  I  Q  T  N  L  *  Q  V  T  S  V  E  S  N  R  D  F  H  L  K  V  L  N  Q  L  M  L  L  Y  G  Y  N  G  M  V  *  L  Q  R  T  P  G  Q  H  I  Q  L  N  T  S  Q  M  L  K  Y  H  A  L  V  L  I  Q  R  M  S  F  S  L  H  V  M  H  S  A  C  F  H  Q  S  A  N  *  T  W  H  R  Q  C  T  T  S  S  V  A  T  Q  L  W  Y  V  L  T  K  S  D  A  S  H  I  T  F  E  L  S  R  C  D  V  K  T  I </second_frame>
            <third_frame>   G  A  *  Y  L  E  C  H  Q  V  W  H  W  Y  F  L  I  P  T  *  S  S  *  C  Y  F  L  P  S  Y  R  V  K  P  T  *  *  F  Y  A  L  C  S  A  G  K  R  G  F  *  R  T  Y  P  R  S  G  L  Y  R  Q  I  C  N  R  *  L  V  L  N  R  T  E  I  F  I  S  K  S  *  I  N  *  C  C  S  M  A  I  M  V  W  F  D  C  R  E  H  P  G  S  I  S  N  *  I  H  P  K  C  *  N  T  M  R  W  S  S  S  K  E  C  H  S  P  C  M  *  C  I  R  R  A  S  T  S  Q  Q  I  E  L  G  T  D  N  V  P  L  H  Q  W  L  H  S  F  G  M  C  S  Q  N  L  M  P  H  I  L  H  L  N  F  Q  D  V  M  *  R  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28367" stop="28149"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYGLIAENTRAAYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVCAHKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="32625" e_stop="32452"/>
            <exon e_start="30984" e_stop="30831"/>
            <exon e_start="30707" e_stop="30623"/>
            <exon e_start="29524" e_stop="29424"/>
            <exon e_start="28771" e_stop="28707"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.943" e_score="0.994"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32625" e_stop="32452" e_length="174"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.996">
            <gDNA_intron_boundary i_start="32451" i_stop="30985" i_length="1467"/>
          </intron>
          <exon e_serial="2" e_score="0.994">
            <gDNA_exon_boundary e_start="30984" e_stop="30831" e_length="154"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.943">
            <gDNA_intron_boundary i_start="30830" i_stop="30708" i_length="123"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30707" e_stop="30623" e_length="85"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="30622" i_stop="29525" i_length="1098"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29524" e_stop="29424" e_length="101"/>
          </exon>
          <intron i_serial="4" don_prob="0.994" acc_prob="0.997">
            <gDNA_intron_boundary i_start="29423" i_stop="28772" i_length="652"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="28771" e_stop="28707" e_length="65"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32625" stop="32452"/>
              <exon start="30984" stop="30831"/>
              <exon start="30707" stop="30623"/>
              <exon start="29524" stop="29424"/>
              <exon start="28771" stop="28707"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U315794" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAACGTGGTTTGCCATGACGACAGTGCAACGCCGGTGAAAGCTCAGACGCTGGAGGAATTGCATTCTCTTCAGAAGAAGAAATCGGCGCCGACTACTCCGATCAAGTCCCCTCATGTATTCGGCGTTGCCGTTTCTGAAGAGGAACGACAGAAACAACAGCTGCAATCCATTAG : AGTTGTATGAGCAAGCTATCAAGTATGAGAAGGGATCATTCATCACGTCGAGCGGTGCTTTAGCCACACTTTCCGGAGCCAAAACTGGCCGTTCCCCAAGAGACAAACGTGTTGTTAGAGACGAAACCACTGAGGACGACCTTTGGTGGGGAAA : GGGTTCACCCAATATCGAAATGGACGAACAGACTTTCTTAATCAACAGAGAAAGAGCTGTTGATTACCTATGCTCTTTGGAGAAG : GTGTTTGTGAATGATCAGTTCCTCAACTGGGATCCAAACAATCGTATCAAAGTTAGAATTGTATCTGCCAGAGCCTATCACTCCTTGTTCATGCACAACAT : GAACTGGGAAGACAACACTGTCTACTGATCACAACCGGTACCTGATCGGAGATGATGAACACTGC</gDNA_template>
            <first_frame> K  R  G  L  P  *  R  Q  C  N  A  G  E  S  S  D  A  G  G  I  A  F  S  S  E  E  E  I  G  A  D  Y  S  D  Q  V  P  S  C  I  R  R  C  R  F  *  R  G  T  T  E  T  T  A  A  I  H  *  :  S  C  M  S  K  L  S  S  M  R  R  D  H  S  S  R  R  A  V  L  *  P  H  F  P  E  P  K  L  A  V  P  Q  E  T  N  V  L  L  E  T  K  P  L  R  T  T  F  G  G  E   : R  V  H  P  I  S  K  W  T  N  R  L  S  *  S  T  E  K  E  L  L  I  T  Y  A  L  W  R  R :   C  L  *  M  I  S  S  S  T  G  I  Q  T  I  V  S  K  L  E  L  Y  L  P  E  P  I  T  P  C  S  C  T  T   : *  T  G  K  T  T  L  S  T  D  H  N  R  Y  L  I  G  D  D  E  H  C </first_frame>
            <second_frame>  N  V  V  C  H  D  D  S  A  T  P  V  K  A  Q  T  L  E  E  L  H  S  L  Q  K  K  K  S  A  P  T  T  P  I  K  S  P  H  V  F  G  V  A  V  S  E  E  E  R  Q  K  Q  Q  L  Q  S  I  R :   V  V  *  A  S  Y  Q  V  *  E  G  I  I  H  H  V  E  R  C  F  S  H  T  F  R  S  Q  N  W  P  F  P  K  R  Q  T  C  C  *  R  R  N  H  *  G  R  P  L  V  G  K  :  G  F  T  Q  Y  R  N  G  R  T  D  F  L  N  Q  Q  R  K  S  C  *  L  P  M  L  F  G  E   : G  V  C  E  *  S  V  P  Q  L  G  S  K  Q  S  Y  Q  S  *  N  C  I  C  Q  S  L  S  L  L  V  H  A  Q  H  :  E  L  G  R  Q  H  C  L  L  I  T  T  G  T  *  S  E  M  M  N  T   </second_frame>
            <third_frame>   T  W  F  A  M  T  T  V  Q  R  R  *  K  L  R  R  W  R  N  C  I  L  F  R  R  R  N  R  R  R  L  L  R  S  S  P  L  M  Y  S  A  L  P  F  L  K  R  N  D  R  N  N  S  C  N  P  L   : E  L  Y  E  Q  A  I  K  Y  E  K  G  S  F  I  T  S  S  G  A  L  A  T  L  S  G  A  K  T  G  R  S  P  R  D  K  R  V  V  R  D  E  T  T  E  D  D  L  W  W  G  K :   G  S  P  N  I  E  M  D  E  Q  T  F  L  I  N  R  E  R  A  V  D  Y  L  C  S  L  E  K  :  V  F  V  N  D  Q  F  L  N  W  D  P  N  N  R  I  K  V  R  I  V  S  A  R  A  Y  H  S  L  F  M  H  N  M :   N  W  E  D  N  T  V  Y  *  S  Q  P  V  P  D  R  R  *  *  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLf0002F21.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32587" stop="32452"/>
                    <exon start="30984" stop="30831"/>
                    <exon start="30707" stop="30623"/>
                    <exon start="29524" stop="29424"/>
                    <exon start="28771" stop="28744"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>501</number_coding_nucleotides>
                  <number_encoded_amino_acids>167</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLRRWRNCILFRRRNRRRLLRSSPLMYSALPFLKRNDRNNSCNPLELYEQAIKYEKGSFITSSGALATLSGAKTGRSPRDKRVVRDETTEDDLWWGKGSPNIEMDEQTFLINRERAVDYLCSLEKVFVNDQFLNWDPNNRIKVRIVSARAYHSLFMHNMNWEDNTVY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 9 chains have been computed
$ 
$ memory statistics:
$ 17376 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 2172 bytes was the average size of a spliced alignment
$ 8752 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2917 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 9 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 05:23:42
-->
