<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:39:55"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309565" ref_strand="+" ref_description="SGN-E309565 [cLEY-26-E7]">
      <seq>acttttgaattggataaagagagtaaccaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggaccttgtgaaaggagaaagcaatgttgcgtcaaccatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgtttaatatttcaaataaaacgtatttgtgttctatgatattcttttattgagttctaagatatatttaattatcttttataccttatgaaagattgttagtacttgtaatactgtttacgcaaatttaaataaaagaaagaggagctatttaggtctccnaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="25700" stop="24742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25488" g_stop="25480" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25391" g_stop="25042" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="363" r_length="354" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="393"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E309565" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="0.913" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309565" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25488" e_stop="25480"/>
          <exon e_start="25391" e_stop="25042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAA-CAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGAC-TTGTGAAAGGAGAAAGCAATGTTGCGTCAA-CATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATA-CTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCTATTTAGGTCTC</genome_strand>
        <mrna_strand>ACTTTTGAA........................................................................................TTGGATAAAGAGAGTAACCAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACCTTGTGAAAGGAGAAAGCAATGTTGCGTCAACCATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACCTTATGAAAGATTGTTAGTACTTGTAATACTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCTATTTAGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372175" ref_strand="+" ref_description="SGN-E372175 [TUS-30-L18](-)">
      <seq>atcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagagattgacatcagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgttagaatctacaatcctgacgatgaaacatttgaatcatcacaaaatcttttcagatcaatatttttacgcggattcgcgatcgaaatccttcatgtttattcaggaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatgctccaactggacaacttgttgagctctttggaattggcacttttgaattggataaagagagtaacaagattgtaaaggcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgtttaatatttcaaataaaacgtatttgtgttctatgatattcttttattgagttctaagatatatttaattatcttttatacttgtgaaagattgttagtacttgtaattctgtttacgcaaatttaaataaaagaaagaggagctaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26681" stop="24752"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26381" g_stop="26328" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25781" g_stop="25480" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="356" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25391" g_stop="25053" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="695" r_length="339" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="696" polyA_stop="705"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E372175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26381" e_stop="26328"/>
          <exon e_start="25781" e_stop="25480"/>
          <exon e_start="25391" e_stop="25053"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCT</genome_strand>
        <mrna_strand>ATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA........................................................................................TTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545563" ref_strand="+" ref_description="SGN-E545563 [TUS-68-H16](-)">
      <seq>gaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctctttggaattggcacttttgaattggataaagagagtaacaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgtttaatatttcaaataaaacgtatttgtgttctatgatattcttttattgagttctaagataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactcgaggggggcccgtaccca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26751" stop="24835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26451" g_stop="26328" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25781" g_stop="25699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="207" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25698" i_stop="25593" i_length="106">
            <donor d_prob="0.041" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25592" g_stop="25480" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="320" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25391" g_stop="25138" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="574" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="611"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E545563" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26451" e_stop="26328"/>
          <exon e_start="25781" e_stop="25699"/>
          <exon e_start="25592" e_stop="25480"/>
          <exon e_start="25391" e_stop="25138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGAT</genome_strand>
        <mrna_strand>GAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAAT..........................................................................................................GACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA........................................................................................TTGGATAAAGAGAGTAACAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E545564" ref_strand="+" ref_description="SGN-E545564 [TUS-68-H16]">
      <seq>gaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctctttggaattggcacttttgaattggataaagagagtaacaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgtttaatatttcaaataaaacgtatttgtgttctatgatattcttttattgagttctaagataaannannnnnnnnnnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26751" stop="24835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26451" g_stop="26328" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25781" g_stop="25699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="207" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25698" i_stop="25593" i_length="106">
            <donor d_prob="0.041" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25592" g_stop="25480" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="320" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25391" g_stop="25138" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="574" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="591" polyA_stop="602"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E545564" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E545564" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26451" e_stop="26328"/>
          <exon e_start="25781" e_stop="25699"/>
          <exon e_start="25592" e_stop="25480"/>
          <exon e_start="25391" e_stop="25138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGAT</genome_strand>
        <mrna_strand>GAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAAT..........................................................................................................GACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA........................................................................................TTGGATAAAGAGAGTAACAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397394" ref_strand="+" ref_description="SGN-E397394 [TUS-45-J23](-)">
      <seq>atccctcatgtttattcaggaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctttttggaattggcacttttgaagtaattaaccaaaaaaacatttacatttctttatttatttttttaaatttatataatatataattaaatgttaattttgttttaacagttggataaagagagtaacaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattatttctatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgattaatatttcaaataaaacgtatttgtgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="25911" stop="24860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25611" g_stop="25163" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="473"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E397394" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="25611" e_stop="25163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATG</genome_strand>
        <mrna_strand>ATCCCTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTTTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATTTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTTTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTTCTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGATTAATATTTCAAATAAAACGTATTTGTGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E311078" ref_strand="+" ref_description="SGN-E311078 [cLEZ-17-L6]">
      <seq>aaggatcagttgaagagatagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctctttggaattggcacttttgaattggataaagagagtaacaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgtttaatatttcaaataaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26750" stop="24879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26450" g_stop="26328" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25781" g_stop="25699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="206" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25698" i_stop="25593" i_length="106">
            <donor d_prob="0.041" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25592" g_stop="25480" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="319" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25391" g_stop="25179" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="532" r_length="213" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E311078" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E311078" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26450" e_stop="26328"/>
          <exon e_start="25781" e_stop="25699"/>
          <exon e_start="25592" e_stop="25480"/>
          <exon e_start="25391" e_stop="25179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAAC</genome_strand>
        <mrna_strand>AAGGATCAGTTGAAGAGATAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAAT..........................................................................................................GACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA........................................................................................TTGGATAAAGAGAGTAACAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E291985" ref_strand="+" ref_description="SGN-E291985 [cLET-7-O8]">
      <seq>tcagagattacttgagtgatgaagaactcaaaaacaccaaatggagaaatggacctcctacttatgatgttgttgataagctctttgaacaagaaagaactaatgtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgttagaatctacaatcctgacgatgaaacatttgaatcatcacaaaatctttttagatcaatatttttacgcggattcgcgatcgaaatccttcatgtttattcaggaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctctttggaattggcacttttgaattggataaagagagtaacaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaattgtgcgtcaacatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27323" stop="24929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27023" g_stop="26920" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26460" g_stop="26328" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="237" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25781" g_stop="25480" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="539" r_length="302" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25391" g_stop="25229" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="702" r_length="163" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E291985" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>702</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27023" e_stop="26920"/>
          <exon e_start="26460" e_stop="26328"/>
          <exon e_start="25781" e_stop="25480"/>
          <exon e_start="25391" e_stop="25229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAAT</genome_strand>
        <mrna_strand>TCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTTAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA........................................................................................TTGGATAAAGAGAGTAACAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATTGTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E579396" ref_strand="+" ref_description="SGN-E579396 [87379]">
      <seq>ggcaagttcaatagtaggagggggaaataaatacagagactacttgagtgatgaagagctcaaaaacacgaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatccaaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggccgaaagggcttgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgttcgactctacaatcctgacgatgaaacatttgaatcgtcacaaaatcttttcagatcgatatttttacgaggtttcgcaatcgaaatcctccatgtttattcaggaccaccaggaattgtttacagatttaggcattggggttacatggatggtccatttaaaggacatgctccaactggacaacttattgagctctttggaattggcacatttgaattggataaagagagtaacaagattataaaggcagagatgtgttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcttcaacatggtccttttatgaaataagaagaaattattactagcgaaaatgttgcttattta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34216" stop="24953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27055" g_stop="26920" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26460" g_stop="26328" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="269" r_length="133" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25781" g_stop="25480" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="571" r_length="302" r_score="0.947"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25391" g_stop="25260" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="572" r_stop="704" r_length="133" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E579396" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E579396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27055" e_stop="26920"/>
          <exon e_start="26460" e_stop="26328"/>
          <exon e_start="25781" e_stop="25480"/>
          <exon e_start="25391" e_stop="25260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCAAGTTCAATAATAGGAGGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACAT-GTCCTTTTATGAAATAAGAAGAAATTATT</genome_strand>
        <mrna_strand>GGCAAGTTCAATAGTAGGAGGGGGAAATAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACGAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCAAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAAGGGCTTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTCGACTCTACAATCCTGACGATGAAACATTTGAATCGTCACAAAATCTTTTCAGATCGATATTTTTACGAGGTTTCGCAATCGAAATCCTCCATGTTTATTCAGGACCACCAGGAATTGTTTACAGATTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGACATGCTCCAACTGGACAACTTATTGAGCTCTTTGGAATTGGCACATTTGAA........................................................................................TTGGATAAAGAGAGTAACAAGATTATAAAGGCAGAGATGTGTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCTTCAACATGGTCCTTTTATGAAATAAGAAGAAATTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308789" ref_strand="+" ref_description="SGN-E308789 [cLEZ-14-F17]">
      <seq>ggaaataaattcagagattacttgagtgatgaagaactcaaaaacaccaaatggagaaatggacctcctacttatgatgttgttgataagctctttgaacaagaaagaactaatgtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgttagaatctacaatcctgacgatgaaacatttgaatcatcacaaaatctttttagatcaatatttttacgcggattcgcgatcgaaatccttcatgtttattcaggaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctctttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27333" stop="25196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27033" g_stop="26920" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26460" g_stop="26328" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="247" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25781" g_stop="25496" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="533" r_length="286" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E308789" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27033" e_stop="26920"/>
          <exon e_start="26460" e_stop="26328"/>
          <exon e_start="25781" e_stop="25496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGG</genome_strand>
        <mrna_strand>GGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTTAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTCTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E308787" ref_strand="+" ref_description="SGN-E308787 [cLEZ-14-F13]">
      <seq>gggggaaataaatccacagatggcgtgattgatgaataactggacaacaccacatggagaaatggacctcctacttatgatgttgtagataaactctttgaacaagaaagaactaatgtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgtatacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtccaaagggattgacaccagcaaaatctgccaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgttagaatctacaatcctgacgatgaaacatttgaatcatcacaaaatctttttagatcaatatttttacgcggattcgcgaacaaaatccttcatgtttattcacgaccaccaggaattgtttacaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27336" stop="25268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27036" g_stop="26920" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.889"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26460" g_stop="26328" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="250" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25781" g_stop="25568" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="464" r_length="214" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E308787" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308787" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27036" e_stop="26920"/>
          <exon e_start="26460" e_stop="26328"/>
          <exon e_start="25781" e_stop="25568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATT</genome_strand>
        <mrna_strand>GGGGGAAATAAATCCACAGATGGCGTGATTGATGAATAACTGGACAACACCACATGGAGAAATGGACCTCCTACTTATGATGTTGTAGATAAACTCTTTGAACAAGAAAGAACTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGTATACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAAGGGATTGACACCAGCAAAATCTGCCAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTTAGATCAATATTTTTACGCGGATTCGCGAACAAAATCCTTCATGTTTATTCACGACCACCAGGAATTGTTTACAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E201226" ref_strand="+" ref_description="SGN-E201226 [cLEC-10-C14]">
      <seq>ataataggagggggaaataaattcagagattacttgagtgatgaagaactcaaaaacaccaaatggagaaatggacctcctacttatgatgttgttgataagctctttgaacaagaaagaactaatgtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgttagaatctacaatcctgacgatgaaacatttgaatcatcacaaaatctttttagatcaatatttttacgcggattcgcgatcgaaatccttcatgtttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27345" stop="25297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27045" g_stop="26920" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26460" g_stop="26328" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="259" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25781" g_stop="25597" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="444" r_length="185" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E201226" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201226" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27045" e_stop="26920"/>
          <exon e_start="26460" e_stop="26328"/>
          <exon e_start="25781" e_stop="25597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATAGGAGGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTAT</genome_strand>
        <mrna_strand>ATAATAGGAGGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTTAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E304916" ref_strand="+" ref_description="SGN-E304916 [cLEX-10-O20]">
      <seq>ttgttttaaatgtttaagtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggttacatttttctcaaaatttctcttactctttcctaaaggtatatgtggtaaaaaaaatatatattattacaattttttcatgtgtaataaatttttagaaaattattttgtctagcgattttttatcttaaaaaatgaagaaaatgaatactttaaaagaaaatcataagtaaagttagagatagagtgaactttatttttatgaattctgaatttaagaattatgactataagaaaacttctatttatttttcttcaataaacaaacaaaacacgcaaatcaccaatttacttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26777" stop="25735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26477" g_stop="26035" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E304916" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E304916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26477" e_stop="26035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGG-TACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGT-AAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAG-A--GA-GAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACG</genome_strand>
        <mrna_strand>TTGTTTTAAATGTTTAAGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTTACATTTTTCTCAAAATTTCTCTTACTCTTTCCTAAAGGTATATGTGGTAAAAAAAATATATATTATTACAATTTTTTCATGTGTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCTGAATTTAAGAATTATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E397395" ref_strand="+" ref_description="SGN-E397395 [TUS-45-J23]">
      <seq>actgttttaaatgtttaggtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggttacatttttctcaaaatttctcttactctttcctaagggtatatgtggtaaaaaaaatatatattattacaattttttcatgtttaataaatttttagaaaattattttgtctagcgattttttatcttaaaaaatgattatttttttttactttaaaagaaaatcataagtattgttagagatggagtgaactttatttttataaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26778" stop="25819"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26478" g_stop="26118" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E397395" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>361</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397395" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26478" e_stop="26118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGG-TACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGT-AAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGA-AAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCA</genome_strand>
        <mrna_strand>ACTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTTACATTTTTCTCAAAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGATTATTTTTTTTTACTTTAAAAGAAAATCATAAGTATTGTTAGAGATGGAGTGAACTTTATTTTTATAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E309014" ref_strand="+" ref_description="SGN-E309014 [cLEY-23-P20]">
      <seq>gaaataaattcagagattacttgagtgatgaagaactcaaaaacaccaaatggagaaatggacctcctacttatgatgttgttgataagctctttgaacaagaaagaactaatgtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggttacatttttctcaaaatttctcttactctttcctaagggtatatgtggtaaaaaaaatatatattattacaattttttcatgtttaataaatttttagaaaattattttgtctagcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27332" stop="25910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27032" g_stop="26920" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26460" g_stop="26211" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="365" r_length="252" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="366" polyA_stop="377"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E309014" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27032" e_stop="26920"/>
          <exon e_start="26460" e_stop="26211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGG-TACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGT-AAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCG</genome_strand>
        <mrna_strand>GAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTTACATTTTTCTCAAAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E693965" ref_strand="+" ref_description="SGN-E693965 [LH_Ea02L03](-)">
      <seq>gggggaaataaattcagagattacttgagtgatgaagaactcaaaaacaccaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactaatgtatgttctcttcttctttttttaatcttctttttatttttggtttctcgcttggtattcggagctcatattaaagctctggcgaaattttcgcctaccgctgggcttgaatgatttttccatgtccagagtttgaacacgaagcctttgattaagggtgaagcaatcccacaatttagtcatcttttttttctggttttcattcggtgttggaagtccacattggagctctggcaaaatcctgattgtccactataggcttgactattgagggattttttttccaatgtccaagattcgaatacgagacttttagttaaggataaaacaatctcgtcattacgaaccttattatttacttcatgtgttttgttacaccctatataaagaaaaatcagatcaattattagtactaaaattcagaatttttaacattataatatatagtggatttattgttttaaatgtttaggtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtacatttttctcacaatttctcttactctttcctaagaaaaatatattgttacaattgtttcatgtttaataaattttagaaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27336" stop="25923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27036" g_stop="26289" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="808" polyA_stop="827"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E693965" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E693965" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27036" e_stop="26289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTC-T-TTTTTTTAATCGTC-TTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATT-G-G---T-GC----T-C--ATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCC-ATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGG</genome_strand>
        <mrna_strand>GGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTCTTTTTTTAATCTTCTTTTTATTTTTGGTTTCTCGCTTGGTATTCGGAGCTCATATTAAAGCTCTGGCGAAAT--T-TTCGCCTACCGCTGGGCTTGAATGATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAGCAATCCCACAATTTAGTCATC-TTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGTCCACATTGGAGCTCTGGCAAAATCCTGATTGTCCACTATAGGCTTGACTATTGAGGGATTTTTTTTCCAATGTCCAAGATTCGAATACGAGACTTTTAGTTAAGGATAAAACAATCTCGTCATTACGAACCTTATTATTTACTTCATGTGTTTTGTTACACCCTATATAAAGAAAAATCAGATCAATTATTAGTACTAAAATTCAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E292411" ref_strand="+" ref_description="SGN-E292411 [cLET-1-N1]">
      <seq>gaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatgttgcaactggacaacttgttgagctctttggaattggcatttttgaattggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggtgaatccacaagtgagatggcattattggaggattcaaaatgccctttcatgaaataaaataataatctactagcaacaacttgaaataagtctatggttatgttctattttttaatagaaataggtgcaaaaagtgtaatttccctttgaagtttattaatgtttcttcaaccatcaaattttcattagagaatgttttatcgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="33133" stop="32000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32833" g_stop="32699" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32606" g_stop="32299" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="441" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E292411" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32833" e_stop="32699"/>
          <exon e_start="32606" e_stop="32299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAATCAGAT</genome_strand>
        <mrna_strand>GAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGG--ATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA............................................................................................TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372882" ref_strand="+" ref_description="SGN-E372882 [TUS-32-B5]">
      <seq>gaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatgttgcaactggacaacttgttgagctctttggaattggcatttttgaattggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggtgaatccacaagtgagatggcattattggaggattcaaaatgccctttcatgaaataaaataataatctactagcaacaacttgaaataagtctatggttatgttctattttttaatagaaataggtgcaaaaagtgtaatttccctttgaagtttattaatgtttcttcaaccatcaaattttcattagagaatgttttatcgtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="33133" stop="32000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32833" g_stop="32699" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32606" g_stop="32299" g_length="308"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="441" r_length="308" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E372882" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32833" e_stop="32699"/>
          <exon e_start="32606" e_stop="32299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAATCAGAT</genome_strand>
        <mrna_strand>GAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGG--ATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA............................................................................................TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E372881" ref_strand="+" ref_description="SGN-E372881 [TUS-32-B5](-)">
      <seq>cgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatgttgcaactggacaacttgttgagctctttggaattggcatttttgaattggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggtgaatccacaagtgagatggcattattggaggattcaaaatgccctttcatgaaataaaataataatctactagcaacaacttgaaataagtctatggttatgttctattttttaatagaaataggtgcaaaaagtgtaatttccctttgaagtttattaatgtttcttcaaccatcaaattttcattagagaatgttttatcgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="33134" stop="32000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32834" g_stop="32699" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="32606" g_stop="32300" g_length="307"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="441" r_length="307" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E372881" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E372881" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="32834" e_stop="32699"/>
          <exon e_start="32606" e_stop="32300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAATCAGA</genome_strand>
        <mrna_strand>CGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGG--ATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA............................................................................................TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368924" ref_strand="+" ref_description="SGN-E368924 [TUS-25-B23](-)">
      <seq>aaaaaggaagtttttgttatatacaaatacagggtcatgctagttttctctgtatcgttttttgatcgtttgagagaattttctcntaatattttttataggaaggaaagggttaacaccggaagaagctgtaaagcttggtggtggttacaacacattcctacaaacttcattgccagaaatcataagagtctataatcctaaggatgaaacatttgaatcatcacaaaatgtatttagatcaatatttgtacgtggattcgcgatcgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatatgttgcaactggacaacttgttgagctctttggaattggcatttttaaagtacttaccaaaaaattaccttacttttttttttcaaaaaataaataaattatatttttgaattaattgaattgtgttgtgtttgaaacagttggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggtgaatccacaagtgagatggcattattggaggattcaaaatgccctttcatgaaataaaataataatctactagcaacaacttgaaataagtctatggttatgttctattttttaatagaaataggtgcaaaaagtgtaatttccctttgaagtttattaatgtttcttcaaccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="33401" stop="5971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33100" g_stop="32318" g_length="783"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="783" r_length="783" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E368924" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>783</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33100" e_stop="32318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTC-TAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGT</genome_strand>
        <mrna_strand>AAAAAGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCNTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAATCATAAGAGTCTATAATCCTAAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTAAAGTACTTACCAAAAAATTACCTTAC-TTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E263312" ref_strand="+" ref_description="SGN-E263312 [cLEG-62-E22]">
      <seq>aaatacagagactacttgagtgatgaagagctcaaaaacacaaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgggaaatggaattagttcacaaaatagatcctaatgagatgaaatctgttgatccaacaaagttcaagaagagtgtcaatggaaggaaagggttaacaccggaagaagctgtaaagcttggtggtggttacaacacattcctacaaacttcattgccagaaaatctaagagtctataatcctgaggatgaaacatttgaatcatcacaaaatgtatttagatcaatatttgtacgtggattcgcgatcgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatatgttgcaactggacaacttgttgagctctttggaattggcatttttgaattggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggtgaatccacaagtgagatggcatttattggaggattcaaaatgccctttcatgaaataaaataataatctactagcaacaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34188" stop="32130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33888" g_stop="33781" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="33201" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="241" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33200" i_stop="33001" i_length="200">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33000" g_stop="32699" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="543" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32606" g_stop="32430" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="544" r_stop="721" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E263312" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263312" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33888" e_stop="33781"/>
          <exon e_start="33333" e_stop="33201"/>
          <exon e_start="33000" e_stop="32699"/>
          <exon e_start="32606" e_stop="32430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCA-TTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGA</genome_strand>
        <mrna_strand>AAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATG........................................................................................................................................................................................................GAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA............................................................................................TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E574237" ref_strand="+" ref_description="SGN-E574237 [33674]">
      <seq>caaatacagagactacttgagtgatgaagagctcaaaaacaccaaatggagaaatggtcctcctagttatgatgttgttgatcaagctctttgtaacaacgaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgcggaaatggaattcagttcacaaagatagatcctaatgacatgaaatctgttgatccaacgaaagttcaaggaagagtgtcaatggcaaggaaagggctaacaccggaagaagctataaagcttggtggtggctataacacattcctagcaaacttcattgccagaaaatctaaggagtctacaatcctgatgatgaaacatgtgaatcatcacaaaatgtttttagatcgatatttatacgaggattcgcgatcgaagtccttcatgtttatgcaggaccaccagaaattgtgtacaagtttagcgcattggggttacatggatggtccatttaaaggatatgttgcaactggacaacttgttgagctctttgggattggcattgttgaattggagaaagagagtaacaagattgtcaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggcgaatccacaagtgagatggcattattggaggcttcaaaatgcccttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34189" stop="32167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33889" g_stop="33781" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="0.85"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="33201" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="250" r_length="138" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33200" i_stop="33001" i_length="200">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33000" g_stop="32699" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="556" r_length="306" r_score="0.927"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32606" g_stop="32467" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="696" r_length="140" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E574237" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574237" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33889" e_stop="33781"/>
          <exon e_start="33333" e_stop="33201"/>
          <exon e_start="33000" e_stop="32699"/>
          <exon e_start="32606" e_stop="32467"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGAT-AAGCTCTTTG-AACAA-GAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTG-GGAAATGGAATT-AGTTCACAAA-ATAGATCCTAATGAGATGAAATCTGTTGATCCAAC-AAAGTTCAA-GAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGG-AAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTA-CAAACTTCATTGCCAGAAAATCTAA-GAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAG-GCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTT</genome_strand>
        <mrna_strand>CAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACCAAATGGAGAAATGGTCCTCCTAGTTATGATGTTGTTGATCAAGCTCTTTGTAACAACGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGCGGAAATGGAATTCAGTTCACAAAGATAGATCCTAATGACATGAAATCTGTTGATCCAACGAAAGTTCAAGGAAGAGTGTCAATG........................................................................................................................................................................................................GCAAGGAAAGGGCTAACACCGGAAGAAGCTATAAAGCTTGGTGGTGGCTATAACACATTCCTAGCAAACTTCATTGCCAGAAAATCTAAGGAGTCTACAATCCTGATGATGAAACATGTGAATCATCACAAAATGTTTTTAGATCGATATTTATACGAGGATTCGCGATCGAAGTCCTTCATGTTTATGCAGGACCACCAGAAATTGTGTACAAGTTTAGCGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGGATTGGCATTGTTGAA............................................................................................TTGGAGAAAGAGAGTAACAAGATTGTCAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGCGAATCCACAAGTGAGATGGCATTATTGGAGGCTTCAAAATGCCCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E282085" ref_strand="+" ref_description="SGN-E282085 [cLES-2-P16]">
      <seq>aaatacagagactacttgagtgatgaagagctcaaaaacacaaaatggagaaatggacctcctacttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgggaaatggaattagttcacaaaatagatcctaatgagatgaaatctgttgatccaacaaagttcaagaagagtgtcaatggaaggaaagggttaacaccggaagaagctgtaaagcttggtggtggttacaacacattcctacaaacttcattgccagaaaatctaagagtctataatcctgaggatgaaacatttgaatcatcacaaaatgtatttagatcaatatttgtacgtggattcgcgatcgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatatgttgcaactggacaacttgttgagctctttggaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34188" stop="32409"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33888" g_stop="33781" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="33201" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="241" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33200" i_stop="33001" i_length="200">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33000" g_stop="32709" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="533" r_length="292" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E282085" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282085" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33888" e_stop="33781"/>
          <exon e_start="33333" e_stop="33201"/>
          <exon e_start="33000" e_stop="32709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGG</genome_strand>
        <mrna_strand>AAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATG........................................................................................................................................................................................................GAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E290303" ref_strand="+" ref_description="SGN-E290303 [cLES-20-A1]">
      <seq>taggagggggaaacaaatacagagactacttgagtgatgaagagctcaaaaacacaaaatggagaaatggacctcctacttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgggaaatggaattagttcacaaaatagatcctaatgagatgaaatctgttgatccaacaaagttcaagaagagtgtcaatggaaggaaagggttaacaccggaagaagctgtaaagcttggtggtggttacaacacattcctacaaacttcattgtcagaaaatctaagagtctataatcctgaggatgaaacatttgaatcatcacaaaatgtatttagatcaatatttgtacgtggattcgcgatcgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34202" stop="32446"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33902" g_stop="33781" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="33201" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="255" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33200" i_stop="33001" i_length="200">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33000" g_stop="32746" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="510" r_length="255" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E290303" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33902" e_stop="33781"/>
          <exon e_start="33333" e_stop="33201"/>
          <exon e_start="33000" e_stop="32746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAGGGGGAAACAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATG</genome_strand>
        <mrna_strand>TAGGAGGGGGAAACAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATG........................................................................................................................................................................................................GAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGTCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E368925" ref_strand="+" ref_description="SGN-E368925 [TUS-25-B23]">
      <seq>gactacttgagtgatgaagagctcaaaaacacaaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgggaaatggaattagttcacaaaatagatcctaatgagatgaaatctgttgatccaacaaagttcaagaagagtgtcaatggtacacttttgttacattttttgtctatatataatttccttcattataatacaggggaaaaagagagtgactaacctaaatgcaagtgttactcttattaaaaagggaagtttttgttatatacaaatacagggtcatgctagttttctctgtatcgttttttgatcgtttgagagaattttctctaatattttttataggaaggaaagggttaacaccggaagaagctgtaaagcttggtggtggttacaacacattcctacaaacttcattgccagaaaatctaagagtctataatcctgaggatgaaacatttgaatcatcacaaaatgtatttagatcaatatttgtacgtggattcgcgatcgaagtccttcatgtttattcaggaccacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34179" stop="32505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33879" g_stop="33781" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="32805" g_length="529"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="628" r_length="529" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E368925" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368925" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33879" e_stop="33781"/>
          <exon e_start="33333" e_stop="32805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACC</genome_strand>
        <mrna_strand>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E247399" ref_strand="+" ref_description="SGN-E247399 [cLEF-46-J17]">
      <seq>gactacttgagtgatgaagagctcaaaaacacaaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgggaaatggaattagttcacaaaatagatcctaatgagatgaaatctgttgatccaacaaagttcaagaagagtgtcaatggtacacttttgttacattttttgtctatatataatttccttcattataatacaggggaaaaagagagtgactaacctaaatgcaagtgttactcttattaaaaagggaagtttttgttatatacaaatacagggtcatgctagttttctctgtatcgttttttgatcgtttgagagaattttctctaatattttttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34179" stop="32702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33879" g_stop="33781" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="33002" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="431" r_length="332" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-E247399" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>431</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247399" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33879" e_stop="33781"/>
          <exon e_start="33333" e_stop="33002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATA</genome_strand>
        <mrna_strand>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E395556" ref_strand="+" ref_description="SGN-E395556 [TUS-43-G16]">
      <seq>accttttcctcccaccatgaatattaataacaataccaactccgccgccaactccgccgccgtcgccgtcaagaaaactcaagggcggaggaaaatagcaattaaaccaatagcaaatcaaaacagtaggcacgttacctttagcaaacgccgtttaggtctcttcaaaaaagctagcgaactttgcattttaaccggcgctgaaatcgcttattatggttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="+" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="36222" stop="37042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36522" g_stop="36742" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="222" r_length="222" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="+" ref_id="SGN-E395556" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>221</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36522" e_stop="36742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTTCCTCCCACCATGAATATTAATAACAATACCAACGCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGC-TATTATGGTTC</genome_strand>
        <mrna_strand>ACCTTTTCCTCCCACCATGAATATTAATAACAATACCAACTCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTTATTATGGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E203501" ref_strand="+" ref_description="SGN-E203501 [cLEC-15-N4]">
      <seq>ccttttcctcccaccatgaatattaataacaataccaactccgccgccaactccgccgccgtcgccgtcaagaaaactcaagggcggaggaaaatagcaattaaaccaatagcaaatcaaaacagtaggcacgttacctttagcaaacgccgtttaggtctcttcaaaaaagctagcgaactttgcattttaaccggcgctgaaatcgctattatggttcagtcgctaaaacgacagcgtttgttcacttttggtcatccgagcgccgacgccgtcattaaccggtaccttaccggaaaatcagaggaacaaaaaccggcggtcgatgatcagttgaactatgtgcaacagagcaatgaatattattctcagatctgtagagaattggagttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="+" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="36223" stop="37218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36523" g_stop="36918" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="+" ref_id="SGN-E203501" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>396</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36523" e_stop="36918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTTTCCTCCCACCATGAATATTAATAACAATACCAACGCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAG</genome_strand>
        <mrna_strand>CCTTTTCCTCCCACCATGAATATTAATAACAATACCAACTCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E323114" ref_strand="+" ref_description="SGN-E323114 [cTOB-28-F3]">
      <seq>tcccaccatgaatattaataacgataccaactccgccgccaactccgccgccgtcgccgtcaagaaaactcaagggcggaggaaaatagcaattaaaccaatagcaaatcaaaacagtaggcacgttacctttagcaaacgccgtttaggtctcttcaaaaaagctagcgaactttgcattttaaccggcgctgaaatcgctattatggttcagtcgctaaaacgacagcgtttgttcacttttggtcatccgagcgccgacgccgtcattaaccggtaccttaccggaaaatcagaggaacaaaaaccggcggtcgatgatcagttgaactatgtgcaacagagcaatgaatattattctcagatctgtagagaattggagttggagaagaagtaaaggaggagattgttattgatgaatcgaagatggtgaatggtggtagtagtagtaataatggaggaggaggattttggtggaatgaatcgattgatgaaaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="+" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="36231" stop="37332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36531" g_stop="37032" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="+" ref_id="SGN-E323114" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36531" e_stop="37032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCACCATGAATATTAATAACAATACCAACGCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAGAAGAAGGTAAAGGAGGAGATTGTTATTGATGAATCGAAGATGGTGAATGGTGGTAGTAGTAGTAATAATGGAGGAGGAGGATTTTGGTGGAATGAATCGATTGATG-AAATGGGA</genome_strand>
        <mrna_strand>TCCCACCATGAATATTAATAACGATACCAACTCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAGAAGAA-GTAAAGGAGGAGATTGTTATTGATGAATCGAAGATGGTGAATGGTGGTAGTAGTAGTAATAATGGAGGAGGAGGATTTTGGTGGAATGAATCGATTGATGAAAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato_potato" ref_id="SGN-E398469" ref_strand="+" ref_description="SGN-E398469 [TUS-43-G16](-)">
      <seq>gttcttcttcaatggcggcggcggcgacggcgtctacttcaagtatgaatcaagctattgattattgtgcttccattgttccttttgatttcaattacccaggaaatgcccaattttgaagcatttaatcaactgcttagatttaaatcactgattagttattaattaatcaaacaattaacatgtcctcttctatctttattattgctaattataataaaactaagaagtactgattcttgcattaacatcttcttgagttgtgtcacaaccaaaaaaggaagctatctttttttaaaaaaataatatggagaattaaatataatttttcgacataaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="+" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="36821" stop="37764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37121" g_stop="37470" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="+" ref_id="SGN-E398469" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>350</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398469" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37121" e_stop="37470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTCTTCAATGGCGGCGGCGGCGACGGCGTCTACTTCAAGTATGAATCAAGCTATTGATTATTGTGCTTCCATTGTTCCTTTTGATTTCAATTACCCAGGAAATGCCCAATTTTGAAGCATTTAATCAACTGCTTAGATTTAAATCACTGATTAGTTATTAATTAATCAAACAATTAACATGTCCTCTTCTATCTTTATTATTGCTAATTATAATAAAACTAAGAAGTACTGATTCTTGCATTAACATCTTCTTGAGTTGTGTCACAACCAAAAAAGGAAGCTATCTTTTTTTAAAAAAATAATATGGAGAATTAAATATAATTTTTCGACATAGAATTAATGTGCA</genome_strand>
        <mrna_strand>GTTCTTCTTCAATGGCGGCGGCGGCGACGGCGTCTACTTCAAGTATGAATCAAGCTATTGATTATTGTGCTTCCATTGTTCCTTTTGATTTCAATTACCCAGGAAATGCCCAATTTTGAAGCATTTAATCAACTGCTTAGATTTAAATCACTGATTAGTTATTAATTAATCAAACAATTAACATGTCCTCTTCTATCTTTATTATTGCTAATTATAATAAAACTAAGAAGTACTGATTCTTGCATTAACATCTTCTTGAGTTGTGTCACAACCAAAAAAGGAAGCTATCTTTTTTTAAAAAAATAATATGGAGAATTAAATATAATTTTTCGACATAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>29</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="27055" PGL_stop="25042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27055" e_stop="26920"/>
            <exon e_start="26460" e_stop="26328"/>
            <exon e_start="25781" e_stop="25480"/>
            <exon e_start="25391" e_stop="25042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27055" e_stop="26920" e_length="136"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26460" e_stop="26328" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="25781" e_stop="25480" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25391" e_stop="25042" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27055" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25480"/>
              <exon start="25391" stop="25260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27045" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27036" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27033" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27023" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25480"/>
              <exon start="25391" stop="25229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26381" stop="26328"/>
              <exon start="25781" stop="25480"/>
              <exon start="25391" stop="25053"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25488" stop="25480"/>
              <exon start="25391" stop="25042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGCAAGTTCAATAATAGGAGGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT : GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG : GTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA : TTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCTATTTAGGTCTC</gDNA_template>
            <first_frame> G  K  F  N  N  R  R  G  K  *  I  Q  R  L  L  E  *  *  R  T  Q  K  H  Q  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  *   : C  M  G  *  R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W :   S  K  E  I  D  I  S  R  I  C  K  A  W  W  *  L  Q  Y  I  P  T  N  F  I  T  R  K  C  *  N  L  Q  S  *  R  *  N  I  *  I  I  T  K  S  F  Q  I  N  I  F  T  R  I  R  D  R  N  P  S  C  L  F  R  T  T  R  N  C  L  Q  I  *  A  L  G  L  H  G  C  S  I  *  R  T  C  S  N  W  T  T  C  *  A  L  W  N  W  H  F  *   : I  G  *  R  E  *  Q  D  C  K  G  R  D  V  F  *  *  R  R  I  A  W  R  T  C  E  R  R  K  Q  C  C  V  N  M  S  F  Y  E  I  R  R  N  Y  Y  Y  Y  V  L  L  F  Y  *  K  M  F  S  L  P  L  K  H  M  V  C  L  I  F  Q  I  K  R  I  C  V  L  *  Y  S  F  I  E  F  *  D  I  F  N  Y  L  L  Y  L  *  K  I  V  S  T  C  N  S  V  Y  A  N  L  N  K  R  K  R  S  Y  L  G  L </first_frame>
            <second_frame>  A  S  S  I  I  G  G  G  N  K  F  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  N  :  V  W  A  E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N   : G  R  K  R  L  T  S  A  E  S  A  K  L  G  G  S  Y  N  I  F  L  Q  T  S  L  P  E  N  V  R  I  Y  N  P  D  D  E  T  F  E  S  S  Q  N  L  F  R  S  I  F  L  R  G  F  A  I  E  I  L  H  V  Y  S  G  P  P  G  I  V  Y  K  F  R  H  W  G  Y  M  D  A  P  F  K  G  H  A  P  T  G  Q  L  V  E  L  F  G  I  G  T  F  E  :  L  D  K  E  S  N  K  I  V  K  A  E  M  F  F  D  R  G  E  L  L  G  G  L  V  K  G  E  S  N  V  A  S  T  C  P  F  M  K  *  E  E  I  I  I  T  M  F  Y  Y  F  T  K  K  C  L  A  Y  L  *  S  T  W  F  V  *  Y  F  K  *  N  V  F  V  F  Y  D  I  L  L  L  S  S  K  I  Y  L  I  I  F  Y  T  C  E  R  L  L  V  L  V  I  L  F  T  Q  I  *  I  K  E  R  G  A  I  *  V   </second_frame>
            <third_frame>   Q  V  Q  *  *  E  G  E  I  N  S  E  I  T  *  V  M  K  N  S  K  T  P  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  :  V  E  R  D  *  H  Q  Q  N  L  Q  S  L  V  V  A  T  I  Y  S  Y  K  L  H  Y  Q  K  M  L  E  S  T  I  L  T  M  K  H  L  N  H  H  K  I  F  S  D  Q  Y  F  Y  A  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  E  L  F  T  N  L  G  I  G  V  T  W  M  L  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  L  L  N :   W  I  K  R  V  T  R  L  *  R  Q  R  C  F  L  I  E  E  N  C  L  E  D  L  *  K  E  K  A  M  L  R  Q  H  V  L  L  *  N  K  K  K  L  L  L  L  C  F  I  I  L  L  K  N  V  *  L  T  F  E  A  H  G  L  F  N  I  S  N  K  T  Y  L  C  S  M  I  F  F  Y  *  V  L  R  Y  I  *  L  S  F  I  L  V  K  D  C  *  Y  L  *  F  C  L  R  K  F  K  *  K  K  E  E  L  F  R  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27054" stop="26920"/>
                    <exon start="26460" stop="26328"/>
                    <exon start="25781" stop="25480"/>
                    <exon start="25391" stop="25272"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>687</number_coding_nucleotides>
                  <number_encoded_amino_acids>229</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ASSIIGGGNKFRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTNVWAEGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGRKRLTSAESAKLGGSYNIFLQTSLPENVRIYNPDDETFESSQNLFRSIFLRGFAIEILHVYSGPPGIVYKFRHWGYMDAPFKGHAPTGQLVELFGIGTFELDKESNKIVKAEMFFDRGELLGGLVKGESNVASTCPFMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="27045" e_stop="26920"/>
            <exon e_start="26460" e_stop="26328"/>
            <exon e_start="25781" e_stop="25163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27045" e_stop="26920" e_length="126"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26460" e_stop="26328" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="0.973">
            <gDNA_exon_boundary e_start="25781" e_stop="25163" e_length="619"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27045" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201226" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27036" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25568"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308787" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27033" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E308789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25611" stop="25163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397394" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATAGGAGGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT : GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG : GTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATG</gDNA_template>
            <first_frame> I  I  G  G  G  N  K  F  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  N  :  V  W  A  E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N   : G  R  K  R  L  T  S  A  E  S  A  K  L  G  G  S  Y  N  I  F  L  Q  T  S  L  P  E  N  V  R  I  Y  N  P  D  D  E  T  F  E  S  S  Q  N  L  F  R  S  I  F  L  R  G  F  A  I  E  I  L  H  V  Y  S  G  P  P  G  I  V  Y  K  F  R  H  W  G  Y  M  D  A  P  F  K  G  H  A  P  T  G  Q  L  V  E  L  F  G  I  G  T  F  E  V  I  N  Q  K  N  I  Y  I  S  L  F  I  F  L  N  L  Y  N  I  *  L  N  V  N  F  V  L  T  V  G  *  R  E  *  Q  D  C  K  G  R  D  V  F  *  *  R  R  I  A  W  R  T  C  E  R  R  K  Q  C  C  V  N  M  S  F  Y  E  I  R  R  N  Y  Y  Y  Y  V  L  L  F  Y  *  K  M  F  S  L  P  L  K  H  M  V  C  L  I  F  Q  I  K  R  I  C  V  L   </first_frame>
            <second_frame>  *  *  E  G  E  I  N  S  E  I  T  *  V  M  K  N  S  K  T  P  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  :  V  E  R  D  *  H  Q  Q  N  L  Q  S  L  V  V  A  T  I  Y  S  Y  K  L  H  Y  Q  K  M  L  E  S  T  I  L  T  M  K  H  L  N  H  H  K  I  F  S  D  Q  Y  F  Y  A  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  E  L  F  T  N  L  G  I  G  V  T  W  M  L  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  L  L  K  *  L  T  K  K  T  S  T  F  L  Y  L  F  F  *  I  Y  I  I  Y  N  *  M  L  I  L  S  *  Q  L  D  K  E  S  N  K  I  V  K  A  E  M  F  F  D  R  G  E  L  L  G  G  L  V  K  G  E  S  N  V  A  S  T  C  P  F  M  K  *  E  E  I  I  I  T  M  F  Y  Y  F  T  K  K  C  L  A  Y  L  *  S  T  W  F  V  *  Y  F  K  *  N  V  F  V  F  Y  </second_frame>
            <third_frame>   N  R  R  G  K  *  I  Q  R  L  L  E  *  *  R  T  Q  K  H  Q  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  *   : C  M  G  *  R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W :   S  K  E  I  D  I  S  R  I  C  K  A  W  W  *  L  Q  Y  I  P  T  N  F  I  T  R  K  C  *  N  L  Q  S  *  R  *  N  I  *  I  I  T  K  S  F  Q  I  N  I  F  T  R  I  R  D  R  N  P  S  C  L  F  R  T  T  R  N  C  L  Q  I  *  A  L  G  L  H  G  C  S  I  *  R  T  C  S  N  W  T  T  C  *  A  L  W  N  W  H  F  *  S  N  *  P  K  K  H  L  H  F  F  I  Y  F  F  K  F  I  *  Y  I  I  K  C  *  F  C  L  N  S  W  I  K  R  V  T  R  L  *  R  Q  R  C  F  L  I  E  E  N  C  L  E  D  L  *  K  E  K  A  M  L  R  Q  H  V  L  L  *  N  K  K  K  L  L  L  L  C  F  I  I  L  L  K  N  V  *  L  T  F  E  A  H  G  L  F  N  I  S  N  K  T  Y  L  C  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27045" stop="26920"/>
                    <exon start="26460" stop="26328"/>
                    <exon start="25781" stop="25417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>621</number_coding_nucleotides>
                  <number_encoded_amino_acids>207</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIGGGNKFRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTNVWAEGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGRKRLTSAESAKLGGSYNIFLQTSLPENVRIYNPDDETFESSQNLFRSIFLRGFAIEILHVYSGPPGIVYKFRHWGYMDAPFKGHAPTGQLVELFGIGTFEVINQKNIYISLFIFLNLYNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26451" e_stop="26328"/>
            <exon e_start="25781" e_stop="25699"/>
            <exon e_start="25592" e_stop="25480"/>
            <exon e_start="25391" e_stop="25042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.041" acc_prob="0.708" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26451" e_stop="26328" e_length="124"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="25781" e_stop="25699" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.041" acc_prob="0.708">
            <gDNA_intron_boundary i_start="25698" i_stop="25593" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="25592" e_stop="25480" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.969">
            <gDNA_exon_boundary e_start="25391" e_stop="25042" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26451" stop="26328"/>
              <exon start="25781" stop="25699"/>
              <exon start="25592" stop="25480"/>
              <exon start="25391" stop="25138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26451" stop="26328"/>
              <exon start="25781" stop="25699"/>
              <exon start="25592" stop="25480"/>
              <exon start="25391" stop="25138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E545564" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26450" stop="26328"/>
              <exon start="25781" stop="25699"/>
              <exon start="25592" stop="25480"/>
              <exon start="25391" stop="25179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311078" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25488" stop="25480"/>
              <exon start="25391" stop="25042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309565" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG : GTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAAT : GACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA : TTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCTATTTAGGTCTC</gDNA_template>
            <first_frame> E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N   : G  R  K  R  L  T  S  A  E  S  A  K  L  G  G  S  Y  N  I  F  L  Q  T  S  L  P  E  N  :  D  H  Q  E  L  F  T  N  L  G  I  G  V  T  W  M  L  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  L  L  N :   W  I  K  R  V  T  R  L  *  R  Q  R  C  F  L  I  E  E  N  C  L  E  D  L  *  K  E  K  A  M  L  R  Q  H  V  L  L  *  N  K  K  K  L  L  L  L  C  F  I  I  L  L  K  N  V  *  L  T  F  E  A  H  G  L  F  N  I  S  N  K  T  Y  L  C  S  M  I  F  F  Y  *  V  L  R  Y  I  *  L  S  F  I  L  V  K  D  C  *  Y  L  *  F  C  L  R  K  F  K  *  K  K  E  E  L  F  R  S  </first_frame>
            <second_frame>  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  :  V  E  R  D  *  H  Q  Q  N  L  Q  S  L  V  V  A  T  I  Y  S  Y  K  L  H  Y  Q  K  M :   T  T  R  N  C  L  Q  I  *  A  L  G  L  H  G  C  S  I  *  R  T  C  S  N  W  T  T  C  *  A  L  W  N  W  H  F  *   : I  G  *  R  E  *  Q  D  C  K  G  R  D  V  F  *  *  R  R  I  A  W  R  T  C  E  R  R  K  Q  C  C  V  N  M  S  F  Y  E  I  R  R  N  Y  Y  Y  Y  V  L  L  F  Y  *  K  M  F  S  L  P  L  K  H  M  V  C  L  I  F  Q  I  K  R  I  C  V  L  *  Y  S  F  I  E  F  *  D  I  F  N  Y  L  L  Y  L  *  K  I  V  S  T  C  N  S  V  Y  A  N  L  N  K  R  K  R  S  Y  L  G  L </second_frame>
            <third_frame>   R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W :   S  K  E  I  D  I  S  R  I  C  K  A  W  W  *  L  Q  Y  I  P  T  N  F  I  T  R  K   : *  P  P  G  I  V  Y  K  F  R  H  W  G  Y  M  D  A  P  F  K  G  H  A  P  T  G  Q  L  V  E  L  F  G  I  G  T  F  E  :  L  D  K  E  S  N  K  I  V  K  A  E  M  F  F  D  R  G  E  L  L  G  G  L  V  K  G  E  S  N  V  A  S  T  C  P  F  M  K  *  E  E  I  I  I  T  M  F  Y  Y  F  T  K  K  C  L  A  Y  L  *  S  T  W  F  V  *  Y  F  K  *  N  V  F  V  F  Y  D  I  L  L  L  S  S  K  I  Y  L  I  I  F  Y  T  C  E  R  L  L  V  L  V  I  L  F  T  Q  I  *  I  K  E  R  G  A  I  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26451" stop="26328"/>
                    <exon start="25781" stop="25699"/>
                    <exon start="25592" stop="25480"/>
                    <exon start="25391" stop="25364"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>345</number_coding_nucleotides>
                  <number_encoded_amino_acids>115</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGRKRLTSAESAKLGGSYNIFLQTSLPENDHQELFTNLGIGVTWMLHLKDMLQLDNLLSSLELALLNWIKRVTRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="27036" e_stop="26035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="27036" e_stop="26035" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27036" stop="26289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693965" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26478" stop="26118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397395" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26477" stop="26035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACG</gDNA_template>
            <first_frame> G  G  N  K  F  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  N  V  C  S  L  L  F  F  N  R  L  F  F  L  I  S  H  S  M  F  E  V  H  I  K  A  L  A  K  S  W  S  P  T  A  G  P  E  L  F  F  H  V  Q  S  L  N  T  K  P  L  I  K  G  E  T  V  S  Q  F  S  H  L  F  F  S  G  F  H  S  V  L  E  A  Y  I  G  A  H  C  L  L  *  A  *  L  L  R  D  F  F  S  M  S  R  I  Q  T  R  D  F  *  L  R  M  K  Q  S  R  H  Y  E  P  Y  *  *  L  H  V  F  C  Y  T  L  Y  K  G  K  S  D  Q  L  L  V  L  K  F  R  I  F  N  I  I  I  Y  S  G  F  I  V  L  N  V  *  V  W  A  E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N  G  T  F  F  S  Q  F  L  L  L  F  P  K  G  I  C  G  K  K  I  Y  I  I  T  I  F  S  C  L  I  N  F  *  K  I  I  L  S  S  D  F  L  S  *  K  M  K  K  M  N  T  L  K  E  N  H  K  *  S  *  R  *  S  E  L  Y  F  Y  E  F  R  E  N  N  D  Y  K  K  T  S  I  Y  F  S  S  I  N  K  Q  N  T  Q  I  T  N  L  L  T </first_frame>
            <second_frame>  G  E  I  N  S  E  I  T  *  V  M  K  N  S  K  T  P  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M  Y  V  L  F  F  F  L  I  V  F  S  F  *  F  L  T  R  C  S  K  Y  I  L  K  L  W  R  N  P  G  R  L  P  L  D  L  N  Y  F  S  M  S  R  V  *  T  R  S  L  *  L  R  V  K  Q  S  H  N  L  V  I  F  F  F  L  V  F  I  R  C  W  K  P  T  L  V  L  I  V  Y  Y  R  L  D  S  *  G  I  F  F  P  C  L  G  F  K  H  E  T  F  S  *  G  *  N  S  L  V  I  T  N  L  I  N  N  F  M  C  F  V  I  P  Y  I  K  E  N  Q  I  N  Y  *  Y  *  N  L  E  F  L  T  L  *  Y  I  V  D  L  L  F  *  M  F  R  Y  G  L  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  V  H  F  S  H  N  F  S  Y  S  F  L  R  V  Y  V  V  K  K  Y  I  L  L  Q  F  F  H  V  *  *  I  F  R  K  L  F  C  L  A  I  F  Y  L  K  K  *  R  K  *  I  L  *  K  K  I  I  S  K  V  R  D  R  V  N  F  I  F  M  N  S  E  R  I  M  T  I  R  K  L  L  F  I  F  L  Q  *  T  N  K  T  R  K  S  P  I  Y  L   </second_frame>
            <third_frame>   G  K  *  I  Q  R  L  L  E  *  *  R  T  Q  K  H  Q  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  *  C  M  F  S  S  F  F  *  S  S  F  L  F  D  F  S  L  D  V  R  S  T  Y  *  S  S  G  E  I  L  V  A  Y  R  W  T  *  I  I  F  P  C  P  E  F  E  H  E  A  F  D  *  G  *  N  S  L  T  I  *  S  S  F  F  F  W  F  S  F  G  V  G  S  L  H  W  C  S  L  S  T  I  G  L  T  L  E  G  F  F  F  H  V  *  D  S  N  T  R  L  L  V  K  D  E  T  V  S  S  L  R  T  L  L  I  T  S  C  V  L  L  Y  P  I  *  R  K  I  R  S  I  I  S  T  K  I  *  N  F  *  H  Y  N  I  *  W  I  Y  C  F  K  C  L  G  M  G  *  R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W  Y  I  F  L  T  I  S  L  T  L  S  *  G  Y  M  W  *  K  N  I  Y  Y  Y  N  F  F  M  F  N  K  F  L  E  N  Y  F  V  *  R  F  F  I  L  K  N  E  E  N  E  Y  F  K  R  K  S  *  V  K  L  E  I  E  *  T  L  F  L  *  I  Q  R  E  *  *  L  *  E  N  F  Y  L  F  F  F  N  K  Q  T  K  H  A  N  H  Q  F  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27036" stop="26674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGNKFRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTNVCSLLFFNRLFFLISHSMFEVHIKALAKSWSPTAGPELFFHVQSLNTKPLIKGETVSQFSHLFFSGFHSVLEAYIGAHCLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26460" stop="26230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWAEGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGTFFSQFLLLFPKGICGKKIYIITIFSCLINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="27032" e_stop="26920"/>
            <exon e_start="26460" e_stop="26211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27032" e_stop="26920" e_length="113"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="26460" e_stop="26211" e_length="250"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27032" stop="26920"/>
              <exon start="26460" stop="26211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309014" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT : GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCG</gDNA_template>
            <first_frame> E  I  N  S  E  I  T  *  V  M  K  N  S  K  T  P  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  V  H  F  S  H  N  F  S  Y  S  F  L  R  V  Y  V  V  K  K  Y  I  L  L  Q  F  F  H  V  *  *  I  F  R  K  L  F  C  L  A </first_frame>
            <second_frame>  K  *  I  Q  R  L  L  E  *  *  R  T  Q  K  H  Q  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  *   : C  M  G  *  R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W  Y  I  F  L  T  I  S  L  T  L  S  *  G  Y  M  W  *  K  N  I  Y  Y  Y  N  F  F  M  F  N  K  F  L  E  N  Y  F  V  *   </second_frame>
            <third_frame>   N  K  F  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  N  :  V  W  A  E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N  G  T  F  F  S  Q  F  L  L  L  F  P  K  G  I  C  G  K  K  I  Y  I  I  T  I  F  S  C  L  I  N  F  *  K  I  I  L  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27030" stop="26920"/>
                    <exon start="26460" stop="26230"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKFRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTNVWAEGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGTFFSQFLLLFPKGICGKKIYIITIFSCLINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="33902" PGL_stop="32299"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33902" e_stop="33781"/>
            <exon e_start="33333" e_stop="33201"/>
            <exon e_start="33000" e_stop="32699"/>
            <exon e_start="32606" e_stop="32299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33902" e_stop="33781" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33333" e_stop="33201" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33200" i_stop="33001" i_length="200"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33000" e_stop="32699" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="32606" e_stop="32299" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33902" stop="33781"/>
              <exon start="33333" stop="33201"/>
              <exon start="33000" stop="32746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33889" stop="33781"/>
              <exon start="33333" stop="33201"/>
              <exon start="33000" stop="32699"/>
              <exon start="32606" stop="32467"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574237" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33888" stop="33781"/>
              <exon start="33333" stop="33201"/>
              <exon start="33000" stop="32699"/>
              <exon start="32606" stop="32430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263312" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33888" stop="33781"/>
              <exon start="33333" stop="33201"/>
              <exon start="33000" stop="32709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282085" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32834" stop="32699"/>
              <exon start="32606" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32699"/>
              <exon start="32606" stop="32299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32699"/>
              <exon start="32606" stop="32299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGAGGGGGAAACAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT : GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATG : GAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA : TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAATCAGAT</gDNA_template>
            <first_frame> *  E  G  E  T  N  T  E  T  T  *  V  M  K  S  S  K  T  Q  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  I  K  Y  K  G  Y  *  R  L  G  K  W  N  *  F  T  K  *  I  L  M  R  *  N  L  L  I  Q  Q  S  S  R  R  V  S  M  :  E  G  K  G  *  H  R  K  K  L  *  S  L  V  V  V  T  T  H  S  Y  K  L  H  C  Q  K  I  *  E  S  I  I  L  R  M  K  H  L  N  H  H  K  M  Y  L  D  Q  Y  L  Y  V  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  K  L  C  T  S  L  G  I  G  V  T  W  M  V  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  F  L  N :   W  R  K  R  V  T  R  L  L  R  Q  S  S  F  L  I  E  E  N  C  L  G  H  L  *  K  E  E  K  M  V  N  P  Q  V  R  W  H  Y  W  R  I  Q  N  A  L  S  *  N  K  I  I  I  Y  *  Q  Q  L  E  I  S  L  W  L  C  S  I  F  *  *  K  *  V  Q  K  V  *  F  P  F  E  V  Y  *  C  F  F  N  H  Q  I  F  I  R  E  C  F  I  V  K  I  R  </first_frame>
            <second_frame>  R  R  G  K  Q  I  Q  R  L  L  E  *  *  R  A  Q  K  H  K  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  S   : C  M  G  *  R  I  S  *  R  *  S  T  K  A  I  E  D  L  G  N  G  I  S  S  Q  N  R  S  *  *  D  E  I  C  *  S  N  K  V  Q  E  E  C  Q  W :   K  E  R  V  N  T  G  R  S  C  K  A  W  W  W  L  Q  H  I  P  T  N  F  I  A  R  K  S  K  S  L  *  S  *  G  *  N  I  *  I  I  T  K  C  I  *  I  N  I  C  T  W  I  R  D  R  S  P  S  C  L  F  R  T  T  R  N  C  V  Q  V  *  A  L  G  L  H  G  W  S  I  *  R  I  C  C  N  W  T  T  C  *  A  L  W  N  W  H  F  *   : I  G  E  R  E  *  Q  D  C  *  G  R  V  L  F  *  *  R  R  I  A  W  A  T  Y  E  R  R  K  K  W  *  I  H  K  *  D  G  I  I  G  G  F  K  M  P  F  H  E  I  K  *  *  S  T  S  N  N  L  K  *  V  Y  G  Y  V  L  F  F  N  R  N  R  C  K  K  C  N  F  P  L  K  F  I  N  V  S  S  T  I  K  F  S  L  E  N  V  L  S  *  K  S  D </second_frame>
            <third_frame>   G  G  G  N  K  Y  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  H  :  V  W  A  E  G  S  V  E  D  K  V  Q  R  L  L  K  T  W  E  M  E  L  V  H  K  I  D  P  N  E  M  K  S  V  D  P  T  K  F  K  K  S  V  N   : G  R  K  G  L  T  P  E  E  A  V  K  L  G  G  G  Y  N  T  F  L  Q  T  S  L  P  E  N  L  R  V  Y  N  P  E  D  E  T  F  E  S  S  Q  N  V  F  R  S  I  F  V  R  G  F  A  I  E  V  L  H  V  Y  S  G  P  P  E  I  V  Y  K  F  R  H  W  G  Y  M  D  G  P  F  K  G  Y  V  A  T  G  Q  L  V  E  L  F  G  I  G  I  F  E  :  L  E  K  E  S  N  K  I  V  K  A  E  F  F  F  D  R  G  E  L  L  G  P  L  M  K  G  G  K  N  G  E  S  T  S  E  M  A  L  L  E  D  S  K  C  P  F  M  K  *  N  N  N  L  L  A  T  T  *  N  K  S  M  V  M  F  Y  F  L  I  E  I  G  A  K  S  V  I  S  L  *  S  L  L  M  F  L  Q  P  S  N  F  H  *  R  M  F  Y  R  K  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33900" stop="33781"/>
                    <exon start="33333" stop="33201"/>
                    <exon start="33000" stop="32699"/>
                    <exon start="32606" stop="32457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGGNKYRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTHVWAEGSVEDKVQRLLKTWEMELVHKIDPNEMKSVDPTKFKKSVNGRKGLTPEEAVKLGGGYNTFLQTSLPENLRVYNPEDETFESSQNVFRSIFVRGFAIEVLHVYSGPPEIVYKFRHWGYMDGPFKGYVATGQLVELFGIGIFELEKESNKIVKAEFFFDRGELLGPLMKGGKNGESTSEMALLEDSKCPFMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33879" e_stop="33781"/>
            <exon e_start="33333" e_stop="32699"/>
            <exon e_start="32606" e_stop="32299"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.990"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33879" e_stop="33781" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33333" e_stop="32699" e_length="635"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92"/>
          </intron>
          <exon e_serial="3" e_score="0.990">
            <gDNA_exon_boundary e_start="32606" e_stop="32299" e_length="308"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33879" stop="33781"/>
              <exon start="33333" stop="32805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33879" stop="33781"/>
              <exon start="33333" stop="33002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32834" stop="32699"/>
              <exon start="32606" stop="32300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372881" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32699"/>
              <exon start="32606" stop="32299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32833" stop="32699"/>
              <exon start="32606" stop="32299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E372882" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT : GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA : TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGTTTTATCGTAAAAATCAGAT</gDNA_template>
            <first_frame> D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  H  :  V  W  A  E  G  S  V  E  D  K  V  Q  R  L  L  K  T  W  E  M  E  L  V  H  K  I  D  P  N  E  M  K  S  V  D  P  T  K  F  K  K  S  V  N  G  T  L  L  L  H  F  L  S  I  Y  N  F  L  H  Y  N  T  G  E  K  E  S  D  *  P  K  C  K  C  Y  S  Y  *  K  G  K  F  L  L  Y  T  N  T  G  S  C  *  F  S  L  Y  R  F  L  I  V  *  E  N  F  L  *  Y  F  L  *  E  G  K  G  *  H  R  K  K  L  *  S  L  V  V  V  T  T  H  S  Y  K  L  H  C  Q  K  I  *  E  S  I  I  L  R  M  K  H  L  N  H  H  K  M  Y  L  D  Q  Y  L  Y  V  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  K  L  C  T  S  L  G  I  G  V  T  W  M  V  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  F  L  N :   W  R  K  R  V  T  R  L  L  R  Q  S  S  F  L  I  E  E  N  C  L  G  H  L  *  K  E  E  K  M  V  N  P  Q  V  R  W  H  Y  W  R  I  Q  N  A  L  S  *  N  K  I  I  I  Y  *  Q  Q  L  E  I  S  L  W  L  C  S  I  F  *  *  K  *  V  Q  K  V  *  F  P  F  E  V  Y  *  C  F  F  N  H  Q  I  F  I  R  E  C  F  I  V  K  I  R  </first_frame>
            <second_frame>  T  T  *  V  M  K  S  S  K  T  Q  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  I  K  Y  K  G  Y  *  R  L  G  K  W  N  *  F  T  K  *  I  L  M  R  *  N  L  L  I  Q  Q  S  S  R  R  V  S  M  V  H  F  C  Y  I  F  C  L  Y  I  I  S  F  I  I  I  Q  G  K  K  R  V  T  N  L  N  A  S  V  T  L  I  K  K  G  S  F  C  Y  I  Q  I  Q  G  H  A  S  F  L  C  I  V  F  *  S  F  E  R  I  F  S  N  I  F  Y  R  K  E  R  V  N  T  G  R  S  C  K  A  W  W  W  L  Q  H  I  P  T  N  F  I  A  R  K  S  K  S  L  *  S  *  G  *  N  I  *  I  I  T  K  C  I  *  I  N  I  C  T  W  I  R  D  R  S  P  S  C  L  F  R  T  T  R  N  C  V  Q  V  *  A  L  G  L  H  G  W  S  I  *  R  I  C  C  N  W  T  T  C  *  A  L  W  N  W  H  F  *   : I  G  E  R  E  *  Q  D  C  *  G  R  V  L  F  *  *  R  R  I  A  W  A  T  Y  E  R  R  K  K  W  *  I  H  K  *  D  G  I  I  G  G  F  K  M  P  F  H  E  I  K  *  *  S  T  S  N  N  L  K  *  V  Y  G  Y  V  L  F  F  N  R  N  R  C  K  K  C  N  F  P  L  K  F  I  N  V  S  S  T  I  K  F  S  L  E  N  V  L  S  *  K  S  D </second_frame>
            <third_frame>   L  L  E  *  *  R  A  Q  K  H  K  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  S   : C  M  G  *  R  I  S  *  R  *  S  T  K  A  I  E  D  L  G  N  G  I  S  S  Q  N  R  S  *  *  D  E  I  C  *  S  N  K  V  Q  E  E  C  Q  W  Y  T  F  V  T  F  F  V  Y  I  *  F  P  S  L  *  Y  R  G  K  R  E  *  L  T  *  M  Q  V  L  L  L  L  K  R  E  V  F  V  I  Y  K  Y  R  V  M  L  V  F  S  V  S  F  F  D  R  L  R  E  F  S  L  I  F  F  I  G  R  K  G  L  T  P  E  E  A  V  K  L  G  G  G  Y  N  T  F  L  Q  T  S  L  P  E  N  L  R  V  Y  N  P  E  D  E  T  F  E  S  S  Q  N  V  F  R  S  I  F  V  R  G  F  A  I  E  V  L  H  V  Y  S  G  P  P  E  I  V  Y  K  F  R  H  W  G  Y  M  D  G  P  F  K  G  Y  V  A  T  G  Q  L  V  E  L  F  G  I  G  I  F  E  :  L  E  K  E  S  N  K  I  V  K  A  E  F  F  F  D  R  G  E  L  L  G  P  L  M  K  G  G  K  N  G  E  S  T  S  E  M  A  L  L  E  D  S  K  C  P  F  M  K  *  N  N  N  L  L  A  T  T  *  N  K  S  M  V  M  F  Y  F  L  I  E  I  G  A  K  S  V  I  S  L  *  S  L  L  M  F  L  Q  P  S  N  F  H  *  R  M  F  Y  R  K  N  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33121" stop="32699"/>
                    <exon start="32606" stop="32457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQVLLLLKREVFVIYKYRVMLVFSVSFFDRLREFSLIFFIGRKGLTPEEAVKLGGGYNTFLQTSLPENLRVYNPEDETFESSQNVFRSIFVRGFAIEVLHVYSGPPEIVYKFRHWGYMDGPFKGYVATGQLVELFGIGIFELEKESNKIVKAEFFFDRGELLGPLMKGGKNGESTSEMALLEDSKCPFMK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33879" stop="33781"/>
                    <exon start="33333" stop="33127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYLSDEELKNTKWRNGPPTYDVVDKLFEQERTHVWAEGSVEDKVQRLLKTWEMELVHKIDPNEMKSVDPTKFKKSVNGTLLLHFLSIYNFLHYNTGEKESD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33879" e_stop="33781"/>
            <exon e_start="33333" e_stop="32318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="0.971"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33879" e_stop="33781" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="0.971">
            <gDNA_exon_boundary e_start="33333" e_stop="32318" e_length="1016"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33879" stop="33781"/>
              <exon start="33333" stop="32805"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368925" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33879" stop="33781"/>
              <exon start="33333" stop="33002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247399" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33100" stop="32318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368924" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT : GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGT</gDNA_template>
            <first_frame> D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  H  :  V  W  A  E  G  S  V  E  D  K  V  Q  R  L  L  K  T  W  E  M  E  L  V  H  K  I  D  P  N  E  M  K  S  V  D  P  T  K  F  K  K  S  V  N  G  T  L  L  L  H  F  L  S  I  Y  N  F  L  H  Y  N  T  G  E  K  E  S  D  *  P  K  C  K  C  Y  S  Y  *  K  G  K  F  L  L  Y  T  N  T  G  S  C  *  F  S  L  Y  R  F  L  I  V  *  E  N  F  L  *  Y  F  L  *  E  G  K  G  *  H  R  K  K  L  *  S  L  V  V  V  T  T  H  S  Y  K  L  H  C  Q  K  I  *  E  S  I  I  L  R  M  K  H  L  N  H  H  K  M  Y  L  D  Q  Y  L  Y  V  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  K  L  C  T  S  L  G  I  G  V  T  W  M  V  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  F  L  K  Y  L  P  K  N  Y  L  T  F  F  F  S  K  N  K  *  I  I  F  L  N  *  L  N  C  V  V  F  E  T  V  G  E  R  E  *  Q  D  C  *  G  R  V  L  F  *  *  R  R  I  A  W  A  T  Y  E  R  R  K  K  W  *  I  H  K  *  D  G  I  I  G  G  F  K  M  P  F  H  E  I  K  *  *  S  T  S  N  N  L  K  *  V  Y  G  Y  V  L  F  F  N  R  N  R  C  K  K  C  N  F  P  L  K  F  I  N  V  S  S  T  I  K  F  S  L  E  N   </first_frame>
            <second_frame>  T  T  *  V  M  K  S  S  K  T  Q  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  I  K  Y  K  G  Y  *  R  L  G  K  W  N  *  F  T  K  *  I  L  M  R  *  N  L  L  I  Q  Q  S  S  R  R  V  S  M  V  H  F  C  Y  I  F  C  L  Y  I  I  S  F  I  I  I  Q  G  K  K  R  V  T  N  L  N  A  S  V  T  L  I  K  K  G  S  F  C  Y  I  Q  I  Q  G  H  A  S  F  L  C  I  V  F  *  S  F  E  R  I  F  S  N  I  F  Y  R  K  E  R  V  N  T  G  R  S  C  K  A  W  W  W  L  Q  H  I  P  T  N  F  I  A  R  K  S  K  S  L  *  S  *  G  *  N  I  *  I  I  T  K  C  I  *  I  N  I  C  T  W  I  R  D  R  S  P  S  C  L  F  R  T  T  R  N  C  V  Q  V  *  A  L  G  L  H  G  W  S  I  *  R  I  C  C  N  W  T  T  C  *  A  L  W  N  W  H  F  *  S  T  Y  Q  K  I  T  L  L  F  F  F  Q  K  I  N  K  L  Y  F  *  I  N  *  I  V  L  C  L  K  Q  L  E  K  E  S  N  K  I  V  K  A  E  F  F  F  D  R  G  E  L  L  G  P  L  M  K  G  G  K  N  G  E  S  T  S  E  M  A  L  L  E  D  S  K  C  P  F  M  K  *  N  N  N  L  L  A  T  T  *  N  K  S  M  V  M  F  Y  F  L  I  E  I  G  A  K  S  V  I  S  L  *  S  L  L  M  F  L  Q  P  S  N  F  H  *  R  M  </second_frame>
            <third_frame>   L  L  E  *  *  R  A  Q  K  H  K  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  S   : C  M  G  *  R  I  S  *  R  *  S  T  K  A  I  E  D  L  G  N  G  I  S  S  Q  N  R  S  *  *  D  E  I  C  *  S  N  K  V  Q  E  E  C  Q  W  Y  T  F  V  T  F  F  V  Y  I  *  F  P  S  L  *  Y  R  G  K  R  E  *  L  T  *  M  Q  V  L  L  L  L  K  R  E  V  F  V  I  Y  K  Y  R  V  M  L  V  F  S  V  S  F  F  D  R  L  R  E  F  S  L  I  F  F  I  G  R  K  G  L  T  P  E  E  A  V  K  L  G  G  G  Y  N  T  F  L  Q  T  S  L  P  E  N  L  R  V  Y  N  P  E  D  E  T  F  E  S  S  Q  N  V  F  R  S  I  F  V  R  G  F  A  I  E  V  L  H  V  Y  S  G  P  P  E  I  V  Y  K  F  R  H  W  G  Y  M  D  G  P  F  K  G  Y  V  A  T  G  Q  L  V  E  L  F  G  I  G  I  F  E  V  L  T  K  K  L  P  Y  F  F  F  F  K  K  *  I  N  Y  I  F  E  L  I  E  L  C  C  V  *  N  S  W  R  K  R  V  T  R  L  L  R  Q  S  S  F  L  I  E  E  N  C  L  G  H  L  *  K  E  E  K  M  V  N  P  Q  V  R  W  H  Y  W  R  I  Q  N  A  L  S  *  N  K  I  I  I  Y  *  Q  Q  L  E  I  S  L  W  L  C  S  I  F  *  *  K  *  V  Q  K  V  *  F  P  F  E  V  Y  *  C  F  F  N  H  Q  I  F  I  R  E  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33121" stop="32654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQVLLLLKREVFVIYKYRVMLVFSVSFFDRLREFSLIFFIGRKGLTPEEAVKLGGGYNTFLQTSLPENLRVYNPEDETFESSQNVFRSIFVRGFAIEVLHVYSGPPEIVYKFRHWGYMDGPFKGYVATGQLVELFGIGIFEVLTKKLPYFFFFKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33879" stop="33781"/>
                    <exon start="33333" stop="33127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYLSDEELKNTKWRNGPPTYDVVDKLFEQERTHVWAEGSVEDKVQRLLKTWEMELVHKIDPNEMKSVDPTKFKKSVNGTLLLHFLSIYNFLHYNTGEKESD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="36522" PGL_stop="37032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36522" e_stop="37032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="36522" e_stop="37032" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36522" stop="36742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36523" stop="36918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36531" stop="37032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTTTTCCTCCCACCATGAATATTAATAACAATACCAACGCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAGAAGAAGGTAAAGGAGGAGATTGTTATTGATGAATCGAAGATGGTGAATGGTGGTAGTAGTAGTAATAATGGAGGAGGAGGATTTTGGTGGAATGAATCGATTGATGAAATGGGA</gDNA_template>
            <first_frame> T  F  S  S  H  H  E  Y  *  *  Q  Y  Q  R  R  R  Q  L  R  R  R  R  R  Q  E  N  S  R  A  E  E  N  S  N  *  T  N  S  K  S  K  Q  *  A  R  Y  L  *  Q  T  P  F  R  S  L  Q  K  S  *  R  T  L  H  F  N  R  R  *  N  R  Y  Y  G  S  V  A  K  T  T  A  F  V  H  F  W  S  S  E  R  R  R  R  H  *  P  V  P  Y  R  K  I  R  G  T  K  T  G  G  R  *  S  V  E  L  C  A  T  E  Q  *  I  L  F  S  D  L  *  R  I  G  V  G  E  E  G  K  G  G  D  C  Y  *  *  I  E  D  G  E  W  W  *  *  *  *  *  W  R  R  R  I  L  V  E  *  I  D  *  *  N  G  </first_frame>
            <second_frame>  P  F  P  P  T  M  N  I  N  N  N  T  N  A  A  A  N  S  A  A  V  A  V  K  K  T  Q  G  R  R  K  I  A  I  K  P  I  A  N  Q  N  S  R  H  V  T  F  S  K  R  R  L  G  L  F  K  K  A  S  E  L  C  I  L  T  G  A  E  I  A  I  M  V  Q  S  L  K  R  Q  R  L  F  T  F  G  H  P  S  A  D  A  V  I  N  R  Y  L  T  G  K  S  E  E  Q  K  P  A  V  D  D  Q  L  N  Y  V  Q  Q  S  N  E  Y  Y  S  Q  I  C  R  E  L  E  L  E  K  K  V  K  E  E  I  V  I  D  E  S  K  M  V  N  G  G  S  S  S  N  N  G  G  G  G  F  W  W  N  E  S  I  D  E  M  G </second_frame>
            <third_frame>   L  F  L  P  P  *  I  L  I  T  I  P  T  P  P  P  T  P  P  P  S  P  S  R  K  L  K  G  G  G  K  *  Q  L  N  Q  *  Q  I  K  T  V  G  T  L  P  L  A  N  A  V  *  V  S  S  K  K  L  A  N  F  A  F  *  P  A  L  K  S  L  L  W  F  S  R  *  N  D  S  V  C  S  L  L  V  I  R  A  P  T  P  S  L  T  G  T  L  P  E  N  Q  R  N  K  N  R  R  S  M  I  S  *  T  M  C  N  R  A  M  N  I  I  L  R  S  V  E  N  W  S  W  R  R  R  *  R  R  R  L  L  L  M  N  R  R  W  *  M  V  V  V  V  V  I  M  E  E  E  D  F  G  G  M  N  R  L  M  K  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36523" stop="37032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPPTMNINNNTNAAANSAAVAVKKTQGRRKIAIKPIANQNSRHVTFSKRRLGLFKKASELCILTGAEIAIMVQSLKRQRLFTFGHPSADAVINRYLTGKSEEQKPAVDDQLNYVQQSNEYYSQICRELELEKKVKEEIVIDESKMVNGGSSSNNGGGGFWWNESIDEMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="37121" PGL_stop="37470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37121" e_stop="37470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.977">
            <gDNA_exon_boundary e_start="37121" e_stop="37470" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37121" stop="37470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398469" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTCTTCTTCAATGGCGGCGGCGGCGACGGCGTCTACTTCAAGTATGAATCAAGCTATTGATTATTGTGCTTCCATTGTTCCTTTTGATTTCAATTACCCAGGAAATGCCCAATTTTGAAGCATTTAATCAACTGCTTAGATTTAAATCACTGATTAGTTATTAATTAATCAAACAATTAACATGTCCTCTTCTATCTTTATTATTGCTAATTATAATAAAACTAAGAAGTACTGATTCTTGCATTAACATCTTCTTGAGTTGTGTCACAACCAAAAAAGGAAGCTATCTTTTTTTAAAAAAATAATATGGAGAATTAAATATAATTTTTCGACATAGAATTAATGTGCA</gDNA_template>
            <first_frame> V  L  L  Q  W  R  R  R  R  R  R  L  L  Q  V  *  I  K  L  L  I  I  V  L  P  L  F  L  L  I  S  I  T  Q  E  M  P  N  F  E  A  F  N  Q  L  L  R  F  K  S  L  I  S  Y  *  L  I  K  Q  L  T  C  P  L  L  S  L  L  L  L  I  I  I  K  L  R  S  T  D  S  C  I  N  I  F  L  S  C  V  T  T  K  K  G  S  Y  L  F  L  K  K  *  Y  G  E  L  N  I  I  F  R  H  R  I  N  V   </first_frame>
            <second_frame>  F  F  F  N  G  G  G  G  D  G  V  Y  F  K  Y  E  S  S  Y  *  L  L  C  F  H  C  S  F  *  F  Q  L  P  R  K  C  P  I  L  K  H  L  I  N  C  L  D  L  N  H  *  L  V  I  N  *  S  N  N  *  H  V  L  F  Y  L  Y  Y  C  *  L  *  *  N  *  E  V  L  I  L  A  L  T  S  S  *  V  V  S  Q  P  K  K  E  A  I  F  F  *  K  N  N  M  E  N  *  I  *  F  F  D  I  E  L  M  C  </second_frame>
            <third_frame>   S  S  S  M  A  A  A  A  T  A  S  T  S  S  M  N  Q  A  I  D  Y  C  A  S  I  V  P  F  D  F  N  Y  P  G  N  A  Q  F  *  S  I  *  S  T  A  *  I  *  I  T  D  *  L  L  I  N  Q  T  I  N  M  S  S  S  I  F  I  I  A  N  Y  N  K  T  K  K  Y  *  F  L  H  *  H  L  L  E  L  C  H  N  Q  K  R  K  L  S  F  F  K  K  I  I  W  R  I  K  Y  N  F  S  T  *  N  *  C  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0014G22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 48 chains have been computed
$ 
$ memory statistics:
$ 126680 bytes spliced alignments in total
$ 29 spliced alignments have been stored
$ 4368 bytes was the average size of a spliced alignment
$ 10064 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2516 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 56 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:41:30
-->
