<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 20:41:33"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317185" ref_strand="+" ref_description="SGN-U317185        Tomato 200607 #1 [10 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: None(evalue: 4e-49, score=175) genbank/nr: gi|34904656|ref|NP_913675.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)] gi|5042456|gb|AAD38293.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)] gi|11320849|dbj|BAB18332.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)](evalue: 5e-55, score=202)">
      <seq>ggaaataaattcagagattacttgagtgatgaagaactcaaaaacaccaaatggagaaatggacctcctacttatgatgttgttgataagctctttgaacaagaaagaactaatgtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgttagaatctacaatcctgacgatgaaacatttgaatcatcacaaaatctttttagatcaatatttttacgcggattcgcgatcgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatgttgcaactggacaacttgttgagctctttggaattggcatttttgaattggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgtttaatatttcaaataaaacgtatttgtgttctatgatattcttttattgagttctaagatatatttaattatcttttatacttgtgaaagattgttagtacttgtaattctgtttacgcaaatttaaataaaagaaagaggagctatttaggtctccnaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27333" stop="24742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27033" g_stop="26920" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="26460" g_stop="26328" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="247" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25781" g_stop="25480" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="547" r_length="300" r_score="0.957"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25391" g_stop="25042" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="897" r_length="350" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="900" polyA_stop="927"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-U317185" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>899</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="27033" e_stop="26920"/>
          <exon e_start="26460" e_stop="26328"/>
          <exon e_start="25781" e_stop="25480"/>
          <exon e_start="25391" e_stop="25042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCTATTTAGGTCTC</genome_strand>
        <mrna_strand>GGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTTAGATCAATATTTTTACGCGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGG--ATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA........................................................................................TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCTATTTAGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317183" ref_strand="+" ref_description="SGN-U317183        Tomato 200607 #1 [4 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: F9K20.18, F9K20_18(evalue: 7e-25, score=79.3) genbank/nr: pathogenesis-related(evalue: 7e-34, score=89.7)">
      <seq>tttaaatgtttaggtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtcgaaagggattgacaccagcagaatctgcaaagcttggtggtagctacaatatattcctacaaacttcattaccagaaaatgaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctctttggaattggcacttttgaattggataaagagagtaacaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattattactatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgtttaatatttcaaataaaacgtatttgtgttctatgatattcttttattgagttctaagataaannannnnnnnnnnaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26773" stop="24835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26473" g_stop="26328" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="25781" g_stop="25699" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="229" r_length="83" r_score="0.976"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="25698" i_stop="25593" i_length="106">
            <donor d_prob="0.041" d_score="1.00"/>
            <acceptor a_prob="0.708" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="25592" g_stop="25480" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="342" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25391" g_stop="25138" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="596" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="613" polyA_stop="624"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-U317183" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317183" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26473" e_stop="26328"/>
          <exon e_start="25781" e_stop="25699"/>
          <exon e_start="25592" e_stop="25480"/>
          <exon e_start="25391" e_stop="25138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACGTTAGATGGTCCACATCCATGTGGGAATACAATATTGTATATATGTAATTAAATAATCTTTTATATGTGACCATAACTAAATTTTGAATTTAATATTTATATATTTTAAATAAATTTCTTGATACAAGCTAAGTATGAACTATGAAATATCCTAATTTACTGAGTTCGATCGAATTTATAATTGGACTTCTAGTTTTGCACTGATATTATTCTTCCTATTATATATTTTGAATTTAATTTATATACGCTGACAGGTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGAT</genome_strand>
        <mrna_strand>TTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAAGGGATTGACACCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAAT..........................................................................................................GACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA........................................................................................TTGGATAAAGAGAGTAACAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335986" ref_strand="-" ref_description="SGN-U335986        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: F9K20.18, F9K20_18(evalue: 2e-21, score=90.9) genbank/nr: pathogenesis-related(evalue: 3e-20, score=96.3)">
      <seq>atccctcatgtttattcaggaccaccaggaattgtttacaaatttaggcattggggttacatggatgctccatttaaaggacatactccaactggacaacttgttgagctttttggaattggcacttttgaagtaattaaccaaaaaaacatttacatttctttatttatttttttaaatttatataatatataattaaatgttaattttgttttaacagttggataaagagagtaacaagattgtaaaagcagagatgttttttgatagaggagaattgcttggaggacttgtgaaaggagaaagcaatgttgcgtcaacatgtccttttatgaaataagaagaaattattatttctatgttttattattttactaaaaaatgtttagcttacctttgaagcacatggtttgattaatatttcaaataaaacgtatttgtgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="25911" stop="24860"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="25611" g_stop="25163" g_length="449"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="450" polyA_stop="473"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-U335986" ref_strand="-">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="0.949" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335986" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="25611" e_stop="25163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATG</genome_strand>
        <mrna_strand>ATCCCTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATACTCCAACTGGACAACTTGTTGAGCTTTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATTTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTTTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAAGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTTCTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGATTAATATTTCAAATAAAACGTATTTGTGTTAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335987" ref_strand="+" ref_description="SGN-U335987        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: None(evalue: 3e-08, score=56.2) genbank/nr: gi|34904656|ref|NP_913675.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)] gi|5042456|gb|AAD38293.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)] gi|11320849|dbj|BAB18332.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)](evalue: 3e-09, score=65.5)">
      <seq>ttgttttaaatgtttaagtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggttacatttttctcaaaatttctcttactctttcctaaaggtatatgtggtaaaaaaaatatatattattacaattttttcatgtgtaataaatttttagaaaattattttgtctagcgattttttatcttaaaaaatgaagaaaatgaatactttaaaagaaaatcataagtaaagttagagatagagtgaactttatttttatgaattctgaatttaagaattatgactataagaaaacttctatttatttttcttcaataaacaaacaaaacacgcaaatcaccaatttacttacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="26777" stop="25735"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26477" g_stop="26035" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="449" r_length="449" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-U335987" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26477" e_stop="26035"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGG-TACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGT-AAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAG-A--GA-GAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACG</genome_strand>
        <mrna_strand>TTGTTTTAAATGTTTAAGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTTACATTTTTCTCAAAATTTCTCTTACTCTTTCCTAAAGGTATATGTGGTAAAAAAAATATATATTATTACAATTTTTTCATGTGTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCTGAATTTAAGAATTATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U335985" ref_strand="-" ref_description="SGN-U335985        Tomato 200607 #1 [1 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: None(evalue: 5e-08, score=55.8) genbank/nr: gi|34904656|ref|NP_913675.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)] gi|5042456|gb|AAD38293.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)] gi|11320849|dbj|BAB18332.1| putative pathogenesis related protein [Oryza sativa (japonica cultivar-group)](evalue: 1e-08, score=63.9)">
      <seq>gggggaaataaattcagagattacttgagtgatgaagaactcaaaaacaccaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactaatgtatgttctcttcttctttttttaatcttctttttatttttggtttctcgcttggtattcggagctcatattaaagctctggcgaaattttcgcctaccgctgggcttgaatgatttttccatgtccagagtttgaacacgaagcctttgattaagggtgaagcaatcccacaatttagtcatcttttttttctggttttcattcggtgttggaagtccacattggagctctggcaaaatcctgattgtccactataggcttgactattgagggattttttttccaatgtccaagattcgaatacgagacttttagttaaggataaaacaatctcgtcattacgaaccttattatttacttcatgtgttttgttacaccctatataaagaaaaatcagatcaattattagtactaaaattcagaatttttaacattataatatatagtggatttattgttttaaatgtttaggtatgggctgaaggatcagttgaagagaaagtgcaaaggctattgaagacttgggaaatggaaatagtccataaggcagatcctaatgagctcaaaactatggatccaaacaagttcacaattagtgttaatggtacatttttctcacaatttctcttactctttcctaagaaaaatatattgttacaattgtttcatgtttaataaattttagaaataaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="27336" stop="25923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="27036" g_stop="26289" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="808" polyA_stop="827"/>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-U335985" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.904" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U335985" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="27036" e_stop="26289"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTC-T-TTTTTTTAATCGTC-TTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATT-G-G---T-GC----T-C--ATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCC-ATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGG</genome_strand>
        <mrna_strand>GGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTCTTTTTTTAATCTTCTTTTTATTTTTGGTTTCTCGCTTGGTATTCGGAGCTCATATTAAAGCTCTGGCGAAAT--T-TTCGCCTACCGCTGGGCTTGAATGATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAGCAATCCCACAATTTAGTCATC-TTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGTCCACATTGGAGCTCTGGCAAAATCCTGATTGTCCACTATAGGCTTGACTATTGAGGGATTTTTTTTCCAATGTCCAAGATTCGAATACGAGACTTTTAGTTAAGGATAAAACAATCTCGTCATTACGAACCTTATTATTTACTTCATGTGTTTTGTTACACCCTATATAAAGAAAAATCAGATCAATTATTAGTACTAAAATTCAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317184" ref_strand="+" ref_description="SGN-U317184        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: F9K20.18, F9K20_18(evalue: 1e-32, score=129) genbank/nr: gi|45124837|emb|CAF33484.1| putative pathogenesis-related protein [Cucumis sativus] (evalue: 2e-33, score=134)">
      <seq>gactacttgagtgatgaagagctcaaaaacacaaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgggaaatggaattagttcacaaaatagatcctaatgagatgaaatctgttgatccaacaaagttcaagaagagtgtcaatggtacacttttgttacattttttgtctatatataatttccttcattataatacaggggaaaaagagagtgactaacctaaatgcaagtgttactcttattaaaaagggaagtttttgttatatacaaatacagggtcatgctagttttctctgtatcgttttttgatcgtttgagagaattttctctaatattttttataggaaggaaagggttaacaccggaagaagctgtaaagcttggtggtggttacaacacattcctacaaacttcattgccagaaaatctaagagtctataatcctgaggatgaaacatttgaatcatcacaaaatgtatttagatcaatatttgtacgtggattcgcgatcgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatatgttgcaactggacaacttgttgagctctttggaattggcatttttaaagtacttaccaaaaaattaccttacttttttttttcaaaaaataaataaattatatttttgaattaattgaattgtgttgtgtttgaaacagttggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggtgaatccacaagtgagatggcattattggaggattcaaaatgccctttcatgaaataaaataataatctactagcaacaacttgaaataagtctatggttatgttctattttttaatagaaataggtgcaaaaagtgtaatttccctttgaagtttattaatgtttcttcaaccaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34179" stop="5971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33879" g_stop="33781" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="32318" g_length="1016"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="1114" r_length="1015" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-U317184" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>1115</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317184" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33879" e_stop="33781"/>
          <exon e_start="33333" e_stop="32318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGT</genome_strand>
        <mrna_strand>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTAAAGTACTTACCAAAAAATTACCTTAC-TTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U317186" ref_strand="+" ref_description="SGN-U317186        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | pathogenesis-related family protein, contains similarity to pathogen-related protein (GI:499073) (Swiss-Prot:P16273) (Hordeum vulgare) | chr1:29626237-29627338 REVERSE | Aliases: None(evalue: 3e-56, score=214) genbank/nr: pathogenesis(evalue: 3e-62, score=241)">
      <seq>taggagggggaaacaaatacagagactacttgagtgatgaagagctcaaaaacacaaaatggagaaatggacctcctagttatgatgttgttgataagctctttgaacaagaaagaactcatgtatgggctgaaggatcagttgaagataaagtacaaaggctattgaagacttgggaaatggaattagttcacaaaatagatcctaatgagatgaaatctgttgatccaacaaagttcaagaagagtgtcaatggaaggaaagggttaacaccggaagaagctgtaaagcttggtggtggttacaacacattcctacaaacttcattgccagaaaatctaagagtctataatcctgaggatgaaacatttgaatcatcacaaaatgtatttagatcaatatttgtacgtggattcgcgatcgaagtccttcatgtttattcaggaccaccagaaattgtgtacaagtttaggcattggggttacatggatggtccatttaaaggatatgttgcaactggacaacttgttgagctctttggaattggcatttttgaattggagaaagagagtaacaagattgttaaggcagagttcttttttgatagaggagaattgcttgggccacttatgaaaggaggaaaaaatggtgaatccacaagtgagatggcatttattggaggattcaaaatgccctttcatgaaataaaataataatctactagcaacaacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="-" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="34202" stop="32130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33902" g_stop="33781" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447">
            <donor d_prob="0.987" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="33333" g_stop="33201" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="255" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="33200" i_stop="33001" i_length="200">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="33000" g_stop="32699" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="557" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="32606" g_stop="32430" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="735" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="-" ref_id="SGN-U317186" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U317186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33902" e_stop="33781"/>
          <exon e_start="33333" e_stop="33201"/>
          <exon e_start="33000" e_stop="32699"/>
          <exon e_start="32606" e_stop="32430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGGAGGGGGAAACAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCATGTATGTTTCTCTTTTCGGATTAAAATTTTTCAAAAATCTTCTTGCGAATACATCACTCCCCTCTTGTTGATACATCTCTATCCCCCTCTCAGATACGTCCCTCCCCTCTCAGATATACACTCTCCCCTCTCATCTCAGATACATCTCTCCCCCCTATGTATCTGAATGTTCTATCCTCTCTGATACATCCATTTTTTCTCGGTTATATTCCTTTTCCTATGTATATGTATTCGGTAGTTCAGTGATGTATTAAATATTCATCAATTTTAAGGGATTATTTTTAATTTAAAAAAGGGTTAAGAGAAATAATGTAATTAGCTTTTACTACTATATGATTTACATAAATTTTCTCTCTTTTTTTTAATCACTGTTTATACTAATAGTTACCTTAATAGAAGTTCAATGTTACGACTAATAGATGCTGGATTTGCCTTTATTCATTTTTAGGTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCA-TTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGA</genome_strand>
        <mrna_strand>TAGGAGGGGGAAACAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTAGTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATG........................................................................................................................................................................................................GAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA............................................................................................TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_U_tomato" ref_id="SGN-U328146" ref_strand="+" ref_description="SGN-U328146        Tomato 200607 #1 [3 ESTs aligned] arabidopsis/peptide: | Symbol: None | MADS-box protein (AGL62), contains Pfal profile PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain) | chr5:24323555-24324746 FORWARD | Aliases: MUF9.24, MUF9_24(evalue: 5e-16, score=80.5) genbank/nr: gi|32402436|gb|AAN52800.1| MADS-box protein AGL62 [Arabidopsis thaliana](evalue: 2e-14, score=81.3)">
      <seq>accttttcctcccaccatgaatattaataacaataccaactccgccgccaactccgccgccgtcgccgtcaagaaaactcaagggcggaggaaaatagcaattaaaccaatagcaaatcaaaacagtaggcacgttacctttagcaaacgccgtttaggtctcttcaaaaaagctagcgaactttgcattttaaccggcgctgaaatcgctattatggttcagtcgctaaaacgacagcgtttgttcacttttggtcatccgagcgccgacgccgtcattaaccggtaccttaccggaaaatcagaggaacaaaaaccggcggtcgatgatcagttgaactatgtgcaacagagcaatgaatattattctcagatctgtagagaattggagttggagaagaagtaaaggaggagattgttattgatgaatcgaagatggtgaatggtggtagtagtagtaataatggaggaggaggattttggtggaatgaatcgattgatgaaaatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0014G22-fbURl/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C04SLm0014G22.1" temp_strand="+" temp_description="C04SLm0014G22.1  CU468283.5 htgs_phase:3 submitted_to_sgn_as:C04SLm0014G22 sequenced_by:sanger upload_account_name:uk">
        <position start="36222" stop="37332"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36522" g_stop="37032" g_length="511"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="511" r_length="511" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0014G22.1" gen_strand="+" ref_id="SGN-U328146" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0014G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U328146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36522" e_stop="37032"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTTCCTCCCACCATGAATATTAATAACAATACCAACGCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAGAAGAAGGTAAAGGAGGAGATTGTTATTGATGAATCGAAGATGGTGAATGGTGGTAGTAGTAGTAATAATGGAGGAGGAGGATTTTGGTGGAATGAATCGATTGATG-AAATGGGA</genome_strand>
        <mrna_strand>ACCTTTTCCTCCCACCATGAATATTAATAACAATACCAACTCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAGAAGAA-GTAAAGGAGGAGATTGTTATTGATGAATCGAAGATGGTGAATGGTGGTAGTAGTAGTAATAATGGAGGAGGAGGATTTTGGTGGAATGAATCGATTGATGAAAATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="27036" PGL_stop="25042"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="27036" e_stop="26035"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.904"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.904">
            <gDNA_exon_boundary e_start="27036" e_stop="26035" e_length="1002"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27036" stop="26289"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335985" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26477" stop="26035"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335987" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGGGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAATGTATGTTCTCTTCTTTTTTTTAATCGTCTTTTCTTTTTGATTTCTCACTCGATGTTCGAAGTACATATTAAAGCTCTGGCGAAATCCTGGTCGCCTACCGCTGGACCTGAATTATTTTTCCATGTCCAGAGTTTGAACACGAAGCCTTTGATTAAGGGTGAAACAGTCTCACAATTTAGTCATCTTTTTTTTTCTGGTTTTCATTCGGTGTTGGAAGCCTACATTGGTGCTCATTGTCTACTATAGGCTTGACTCTTGAGGGATTTTTTTTCCATGTCTAGGATTCAAACACGAGACTTTTAGTTAAGGATGAAACAGTCTCGTCATTACGAACCTTATTAATAACTTCATGTGTTTTGTTATACCCTATATAAAGGAAAATCAGATCAATTATTAGTACTAAAATTTAGAATTTTTAACATTATAATATATAGTGGATTTATTGTTTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATGGTACATTTTTCTCACAATTTCTCTTACTCTTTCCTAAGGGTATATGTGGTAAAAAAATATATATTATTACAATTTTTTCATGTTTAATAAATTTTTAGAAAATTATTTTGTCTAGCGATTTTTTATCTTAAAAAATGAAGAAAATGAATACTTTAAAAGAAAATCATAAGTAAAGTTAGAGATAGAGTGAACTTTATTTTTATGAATTCAGAGAGAATAATGACTATAAGAAAACTTCTATTTATTTTTCTTCAATAAACAAACAAAACACGCAAATCACCAATTTACTTACG</gDNA_template>
            <first_frame> G  G  N  K  F  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  N  V  C  S  L  L  F  F  N  R  L  F  F  L  I  S  H  S  M  F  E  V  H  I  K  A  L  A  K  S  W  S  P  T  A  G  P  E  L  F  F  H  V  Q  S  L  N  T  K  P  L  I  K  G  E  T  V  S  Q  F  S  H  L  F  F  S  G  F  H  S  V  L  E  A  Y  I  G  A  H  C  L  L  *  A  *  L  L  R  D  F  F  S  M  S  R  I  Q  T  R  D  F  *  L  R  M  K  Q  S  R  H  Y  E  P  Y  *  *  L  H  V  F  C  Y  T  L  Y  K  G  K  S  D  Q  L  L  V  L  K  F  R  I  F  N  I  I  I  Y  S  G  F  I  V  L  N  V  *  V  W  A  E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N  G  T  F  F  S  Q  F  L  L  L  F  P  K  G  I  C  G  K  K  I  Y  I  I  T  I  F  S  C  L  I  N  F  *  K  I  I  L  S  S  D  F  L  S  *  K  M  K  K  M  N  T  L  K  E  N  H  K  *  S  *  R  *  S  E  L  Y  F  Y  E  F  R  E  N  N  D  Y  K  K  T  S  I  Y  F  S  S  I  N  K  Q  N  T  Q  I  T  N  L  L  T </first_frame>
            <second_frame>  G  E  I  N  S  E  I  T  *  V  M  K  N  S  K  T  P  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M  Y  V  L  F  F  F  L  I  V  F  S  F  *  F  L  T  R  C  S  K  Y  I  L  K  L  W  R  N  P  G  R  L  P  L  D  L  N  Y  F  S  M  S  R  V  *  T  R  S  L  *  L  R  V  K  Q  S  H  N  L  V  I  F  F  F  L  V  F  I  R  C  W  K  P  T  L  V  L  I  V  Y  Y  R  L  D  S  *  G  I  F  F  P  C  L  G  F  K  H  E  T  F  S  *  G  *  N  S  L  V  I  T  N  L  I  N  N  F  M  C  F  V  I  P  Y  I  K  E  N  Q  I  N  Y  *  Y  *  N  L  E  F  L  T  L  *  Y  I  V  D  L  L  F  *  M  F  R  Y  G  L  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  V  H  F  S  H  N  F  S  Y  S  F  L  R  V  Y  V  V  K  K  Y  I  L  L  Q  F  F  H  V  *  *  I  F  R  K  L  F  C  L  A  I  F  Y  L  K  K  *  R  K  *  I  L  *  K  K  I  I  S  K  V  R  D  R  V  N  F  I  F  M  N  S  E  R  I  M  T  I  R  K  L  L  F  I  F  L  Q  *  T  N  K  T  R  K  S  P  I  Y  L   </second_frame>
            <third_frame>   G  K  *  I  Q  R  L  L  E  *  *  R  T  Q  K  H  Q  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  *  C  M  F  S  S  F  F  *  S  S  F  L  F  D  F  S  L  D  V  R  S  T  Y  *  S  S  G  E  I  L  V  A  Y  R  W  T  *  I  I  F  P  C  P  E  F  E  H  E  A  F  D  *  G  *  N  S  L  T  I  *  S  S  F  F  F  W  F  S  F  G  V  G  S  L  H  W  C  S  L  S  T  I  G  L  T  L  E  G  F  F  F  H  V  *  D  S  N  T  R  L  L  V  K  D  E  T  V  S  S  L  R  T  L  L  I  T  S  C  V  L  L  Y  P  I  *  R  K  I  R  S  I  I  S  T  K  I  *  N  F  *  H  Y  N  I  *  W  I  Y  C  F  K  C  L  G  M  G  *  R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W  Y  I  F  L  T  I  S  L  T  L  S  *  G  Y  M  W  *  K  N  I  Y  Y  Y  N  F  F  M  F  N  K  F  L  E  N  Y  F  V  *  R  F  F  I  L  K  N  E  E  N  E  Y  F  K  R  K  S  *  V  K  L  E  I  E  *  T  L  F  L  *  I  Q  R  E  *  *  L  *  E  N  F  Y  L  F  F  F  N  K  Q  T  K  H  A  N  H  Q  F  T  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27036" stop="26674"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>360</number_coding_nucleotides>
                  <number_encoded_amino_acids>120</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGNKFRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTNVCSLLFFNRLFFLISHSMFEVHIKALAKSWSPTAGPELFFHVQSLNTKPLIKGETVSQFSHLFFSGFHSVLEAYIGAHCLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26460" stop="26230"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWAEGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGTFFSQFLLLFPKGICGKKIYIITIFSCLINF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="25611" e_stop="25163"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.973"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.973">
            <gDNA_exon_boundary e_start="25611" e_stop="25163" e_length="449"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="25611" stop="25163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U335986" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAAGTAATTAACCAAAAAAACATCTACATTTCTTTATTTATTTTTTTAAATTTATATAATATATAATTAAATGTTAATTTTGTCTTAACAGTTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATG</gDNA_template>
            <first_frame> I  L  H  V  Y  S  G  P  P  G  I  V  Y  K  F  R  H  W  G  Y  M  D  A  P  F  K  G  H  A  P  T  G  Q  L  V  E  L  F  G  I  G  T  F  E  V  I  N  Q  K  N  I  Y  I  S  L  F  I  F  L  N  L  Y  N  I  *  L  N  V  N  F  V  L  T  V  G  *  R  E  *  Q  D  C  K  G  R  D  V  F  *  *  R  R  I  A  W  R  T  C  E  R  R  K  Q  C  C  V  N  M  S  F  Y  E  I  R  R  N  Y  Y  Y  Y  V  L  L  F  Y  *  K  M  F  S  L  P  L  K  H  M  V  C  L  I  F  Q  I  K  R  I  C  V  L   </first_frame>
            <second_frame>  S  F  M  F  I  Q  D  H  Q  E  L  F  T  N  L  G  I  G  V  T  W  M  L  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  L  L  K  *  L  T  K  K  T  S  T  F  L  Y  L  F  F  *  I  Y  I  I  Y  N  *  M  L  I  L  S  *  Q  L  D  K  E  S  N  K  I  V  K  A  E  M  F  F  D  R  G  E  L  L  G  G  L  V  K  G  E  S  N  V  A  S  T  C  P  F  M  K  *  E  E  I  I  I  T  M  F  Y  Y  F  T  K  K  C  L  A  Y  L  *  S  T  W  F  V  *  Y  F  K  *  N  V  F  V  F  Y  </second_frame>
            <third_frame>   P  S  C  L  F  R  T  T  R  N  C  L  Q  I  *  A  L  G  L  H  G  C  S  I  *  R  T  C  S  N  W  T  T  C  *  A  L  W  N  W  H  F  *  S  N  *  P  K  K  H  L  H  F  F  I  Y  F  F  K  F  I  *  Y  I  I  K  C  *  F  C  L  N  S  W  I  K  R  V  T  R  L  *  R  Q  R  C  F  L  I  E  E  N  C  L  E  D  L  *  K  E  K  A  M  L  R  Q  H  V  L  L  *  N  K  K  K  L  L  L  L  C  F  I  I  L  L  K  N  V  *  L  T  F  E  A  H  G  L  F  N  I  S  N  K  T  Y  L  C  S  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="25611" stop="25417"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILHVYSGPPGIVYKFRHWGYMDAPFKGHAPTGQLVELFGIGTFEVINQKNIYISLFIFLNLYNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="26473" e_stop="26328"/>
            <exon e_start="25781" e_stop="25699"/>
            <exon e_start="25592" e_stop="25480"/>
            <exon e_start="25391" e_stop="25138"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.041" acc_prob="0.708" e_score="0.976"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.991"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="26473" e_stop="26328" e_length="146"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546"/>
          </intron>
          <exon e_serial="2" e_score="0.976">
            <gDNA_exon_boundary e_start="25781" e_stop="25699" e_length="83"/>
          </exon>
          <intron i_serial="2" don_prob="0.041" acc_prob="0.708">
            <gDNA_intron_boundary i_start="25698" i_stop="25593" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="0.991">
            <gDNA_exon_boundary e_start="25592" e_stop="25480" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.996">
            <gDNA_exon_boundary e_start="25391" e_stop="25138" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26473" stop="26328"/>
              <exon start="25781" stop="25699"/>
              <exon start="25592" stop="25480"/>
              <exon start="25391" stop="25138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317183" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTAAATGTTTAGGTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG : GTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAAT : GACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA : TTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGAT</gDNA_template>
            <first_frame> F  K  C  L  G  M  G  *  R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W :   S  K  E  I  D  I  S  R  I  C  K  A  W  W  *  L  Q  Y  I  P  T  N  F  I  T  R  K   : *  P  P  G  I  V  Y  K  F  R  H  W  G  Y  M  D  A  P  F  K  G  H  A  P  T  G  Q  L  V  E  L  F  G  I  G  T  F  E  :  L  D  K  E  S  N  K  I  V  K  A  E  M  F  F  D  R  G  E  L  L  G  G  L  V  K  G  E  S  N  V  A  S  T  C  P  F  M  K  *  E  E  I  I  I  T  M  F  Y  Y  F  T  K  K  C  L  A  Y  L  *  S  T  W  F  V  *  Y  F  K  *  N  V  F  V  F  Y  D  I  L  L  L  S  S  K   </first_frame>
            <second_frame>  L  N  V  *  V  W  A  E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N   : G  R  K  R  L  T  S  A  E  S  A  K  L  G  G  S  Y  N  I  F  L  Q  T  S  L  P  E  N  :  D  H  Q  E  L  F  T  N  L  G  I  G  V  T  W  M  L  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  L  L  N :   W  I  K  R  V  T  R  L  *  R  Q  R  C  F  L  I  E  E  N  C  L  E  D  L  *  K  E  K  A  M  L  R  Q  H  V  L  L  *  N  K  K  K  L  L  L  L  C  F  I  I  L  L  K  N  V  *  L  T  F  E  A  H  G  L  F  N  I  S  N  K  T  Y  L  C  S  M  I  F  F  Y  *  V  L  R  </second_frame>
            <third_frame>   *  M  F  R  Y  G  L  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  :  V  E  R  D  *  H  Q  Q  N  L  Q  S  L  V  V  A  T  I  Y  S  Y  K  L  H  Y  Q  K  M :   T  T  R  N  C  L  Q  I  *  A  L  G  L  H  G  C  S  I  *  R  T  C  S  N  W  T  T  C  *  A  L  W  N  W  H  F  *   : I  G  *  R  E  *  Q  D  C  K  G  R  D  V  F  *  *  R  R  I  A  W  R  T  C  E  R  R  K  Q  C  C  V  N  M  S  F  Y  E  I  R  R  N  Y  Y  Y  Y  V  L  L  F  Y  *  K  M  F  S  L  P  L  K  H  M  V  C  L  I  F  Q  I  K  R  I  C  V  L  *  Y  S  F  I  E  F  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="26460" stop="26328"/>
                    <exon start="25781" stop="25699"/>
                    <exon start="25592" stop="25480"/>
                    <exon start="25391" stop="25364"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>354</number_coding_nucleotides>
                  <number_encoded_amino_acids>118</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWAEGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGRKRLTSAESAKLGGSYNIFLQTSLPENDHQELFTNLGIGVTWMLHLKDMLQLDNLLSSLELALLNWIKRVTRL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="27033" e_stop="26920"/>
            <exon e_start="26460" e_stop="26328"/>
            <exon e_start="25781" e_stop="25480"/>
            <exon e_start="25391" e_stop="25042"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="0.957"/>
          <exon-only e_score="0.977"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="27033" e_stop="26920" e_length="114"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="1.000">
            <gDNA_intron_boundary i_start="26919" i_stop="26461" i_length="459"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="26460" e_stop="26328" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.999">
            <gDNA_intron_boundary i_start="26327" i_stop="25782" i_length="546"/>
          </intron>
          <exon e_serial="3" e_score="0.957">
            <gDNA_exon_boundary e_start="25781" e_stop="25480" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="25479" i_stop="25392" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.977">
            <gDNA_exon_boundary e_start="25391" e_stop="25042" e_length="350"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="27033" stop="26920"/>
              <exon start="26460" stop="26328"/>
              <exon start="25781" stop="25480"/>
              <exon start="25391" stop="25042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317185" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGAAATAAATTCAGAGATTACTTGAGTGATGAAGAACTCAAAAACACCAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTAAT : GTATGGGCTGAAGGATCAGTTGAAGAGAAAGTGCAAAGGCTATTGAAGACTTGGGAAATGGAAATAGTCCATAAGGCAGATCCTAATGAGCTCAAAACTATGGATCCAAACAAGTTCACAATTAGTGTTAATG : GTCGAAAGAGATTGACATCAGCAGAATCTGCAAAGCTTGGTGGTAGCTACAATATATTCCTACAAACTTCATTACCAGAAAATGTTAGAATCTACAATCCTGACGATGAAACATTTGAATCATCACAAAATCTTTTCAGATCAATATTTTTACGCGGATTCGCGATCGAAATCCTTCATGTTTATTCAGGACCACCAGGAATTGTTTACAAATTTAGGCATTGGGGTTACATGGATGCTCCATTTAAAGGACATGCTCCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCACTTTTGAA : TTGGATAAAGAGAGTAACAAGATTGTAAAGGCAGAGATGTTTTTTGATAGAGGAGAATTGCTTGGAGGACTTGTGAAAGGAGAAAGCAATGTTGCGTCAACATGTCCTTTTATGAAATAAGAAGAAATTATTATTACTATGTTTTATTATTTTACTAAAAAATGTTTAGCTTACCTTTGAAGCACATGGTTTGTTTAATATTTCAAATAAAACGTATTTGTGTTCTATGATATTCTTTTATTGAGTTCTAAGATATATTTAATTATCTTTTATACTTGTGAAAGATTGTTAGTACTTGTAATTCTGTTTACGCAAATTTAAATAAAAGAAAGAGGAGCTATTTAGGTCTC</gDNA_template>
            <first_frame> G  N  K  F  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  N  :  V  W  A  E  G  S  V  E  E  K  V  Q  R  L  L  K  T  W  E  M  E  I  V  H  K  A  D  P  N  E  L  K  T  M  D  P  N  K  F  T  I  S  V  N   : G  R  K  R  L  T  S  A  E  S  A  K  L  G  G  S  Y  N  I  F  L  Q  T  S  L  P  E  N  V  R  I  Y  N  P  D  D  E  T  F  E  S  S  Q  N  L  F  R  S  I  F  L  R  G  F  A  I  E  I  L  H  V  Y  S  G  P  P  G  I  V  Y  K  F  R  H  W  G  Y  M  D  A  P  F  K  G  H  A  P  T  G  Q  L  V  E  L  F  G  I  G  T  F  E  :  L  D  K  E  S  N  K  I  V  K  A  E  M  F  F  D  R  G  E  L  L  G  G  L  V  K  G  E  S  N  V  A  S  T  C  P  F  M  K  *  E  E  I  I  I  T  M  F  Y  Y  F  T  K  K  C  L  A  Y  L  *  S  T  W  F  V  *  Y  F  K  *  N  V  F  V  F  Y  D  I  L  L  L  S  S  K  I  Y  L  I  I  F  Y  T  C  E  R  L  L  V  L  V  I  L  F  T  Q  I  *  I  K  E  R  G  A  I  *  V   </first_frame>
            <second_frame>  E  I  N  S  E  I  T  *  V  M  K  N  S  K  T  P  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  R  K  C  K  G  Y  *  R  L  G  K  W  K  *  S  I  R  Q  I  L  M  S  S  K  L  W  I  Q  T  S  S  Q  L  V  L  M  :  V  E  R  D  *  H  Q  Q  N  L  Q  S  L  V  V  A  T  I  Y  S  Y  K  L  H  Y  Q  K  M  L  E  S  T  I  L  T  M  K  H  L  N  H  H  K  I  F  S  D  Q  Y  F  Y  A  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  E  L  F  T  N  L  G  I  G  V  T  W  M  L  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  L  L  N :   W  I  K  R  V  T  R  L  *  R  Q  R  C  F  L  I  E  E  N  C  L  E  D  L  *  K  E  K  A  M  L  R  Q  H  V  L  L  *  N  K  K  K  L  L  L  L  C  F  I  I  L  L  K  N  V  *  L  T  F  E  A  H  G  L  F  N  I  S  N  K  T  Y  L  C  S  M  I  F  F  Y  *  V  L  R  Y  I  *  L  S  F  I  L  V  K  D  C  *  Y  L  *  F  C  L  R  K  F  K  *  K  K  E  E  L  F  R  S  </second_frame>
            <third_frame>   K  *  I  Q  R  L  L  E  *  *  R  T  Q  K  H  Q  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  *   : C  M  G  *  R  I  S  *  R  E  S  A  K  A  I  E  D  L  G  N  G  N  S  P  *  G  R  S  *  *  A  Q  N  Y  G  S  K  Q  V  H  N  *  C  *  W :   S  K  E  I  D  I  S  R  I  C  K  A  W  W  *  L  Q  Y  I  P  T  N  F  I  T  R  K  C  *  N  L  Q  S  *  R  *  N  I  *  I  I  T  K  S  F  Q  I  N  I  F  T  R  I  R  D  R  N  P  S  C  L  F  R  T  T  R  N  C  L  Q  I  *  A  L  G  L  H  G  C  S  I  *  R  T  C  S  N  W  T  T  C  *  A  L  W  N  W  H  F  *   : I  G  *  R  E  *  Q  D  C  K  G  R  D  V  F  *  *  R  R  I  A  W  R  T  C  E  R  R  K  Q  C  C  V  N  M  S  F  Y  E  I  R  R  N  Y  Y  Y  Y  V  L  L  F  Y  *  K  M  F  S  L  P  L  K  H  M  V  C  L  I  F  Q  I  K  R  I  C  V  L  *  Y  S  F  I  E  F  *  D  I  F  N  Y  L  L  Y  L  *  K  I  V  S  T  C  N  S  V  Y  A  N  L  N  K  R  K  R  S  Y  L  G  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="27033" stop="26920"/>
                    <exon start="26460" stop="26328"/>
                    <exon start="25781" stop="25480"/>
                    <exon start="25391" stop="25272"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GNKFRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTNVWAEGSVEEKVQRLLKTWEMEIVHKADPNELKTMDPNKFTISVNGRKRLTSAESAKLGGSYNIFLQTSLPENVRIYNPDDETFESSQNLFRSIFLRGFAIEILHVYSGPPGIVYKFRHWGYMDAPFKGHAPTGQLVELFGIGTFELDKESNKIVKAEMFFDRGELLGGLVKGESNVASTCPFMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="33902" PGL_stop="32318"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33902" e_stop="33781"/>
            <exon e_start="33333" e_stop="33201"/>
            <exon e_start="33000" e_stop="32699"/>
            <exon e_start="32606" e_stop="32430"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.992"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="33902" e_stop="33781" e_length="122"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="33333" e_stop="33201" e_length="133"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33200" i_stop="33001" i_length="200"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="33000" e_stop="32699" e_length="302"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="32698" i_stop="32607" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="0.989">
            <gDNA_exon_boundary e_start="32606" e_stop="32430" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33902" stop="33781"/>
              <exon start="33333" stop="33201"/>
              <exon start="33000" stop="32699"/>
              <exon start="32606" stop="32430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAGGAGGGGGAAACAAATACAGAGACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT : GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATG : GAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAA : TTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGA</gDNA_template>
            <first_frame> *  E  G  E  T  N  T  E  T  T  *  V  M  K  S  S  K  T  Q  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  I  K  Y  K  G  Y  *  R  L  G  K  W  N  *  F  T  K  *  I  L  M  R  *  N  L  L  I  Q  Q  S  S  R  R  V  S  M  :  E  G  K  G  *  H  R  K  K  L  *  S  L  V  V  V  T  T  H  S  Y  K  L  H  C  Q  K  I  *  E  S  I  I  L  R  M  K  H  L  N  H  H  K  M  Y  L  D  Q  Y  L  Y  V  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  K  L  C  T  S  L  G  I  G  V  T  W  M  V  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  F  L  N :   W  R  K  R  V  T  R  L  L  R  Q  S  S  F  L  I  E  E  N  C  L  G  H  L  *  K  E  E  K  M  V  N  P  Q  V  R  W  H  Y  W  R  I  Q  N  A  L  S  *  N  K  I  I  I  Y  *  Q  Q  L   </first_frame>
            <second_frame>  R  R  G  K  Q  I  Q  R  L  L  E  *  *  R  A  Q  K  H  K  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  S   : C  M  G  *  R  I  S  *  R  *  S  T  K  A  I  E  D  L  G  N  G  I  S  S  Q  N  R  S  *  *  D  E  I  C  *  S  N  K  V  Q  E  E  C  Q  W :   K  E  R  V  N  T  G  R  S  C  K  A  W  W  W  L  Q  H  I  P  T  N  F  I  A  R  K  S  K  S  L  *  S  *  G  *  N  I  *  I  I  T  K  C  I  *  I  N  I  C  T  W  I  R  D  R  S  P  S  C  L  F  R  T  T  R  N  C  V  Q  V  *  A  L  G  L  H  G  W  S  I  *  R  I  C  C  N  W  T  T  C  *  A  L  W  N  W  H  F  *   : I  G  E  R  E  *  Q  D  C  *  G  R  V  L  F  *  *  R  R  I  A  W  A  T  Y  E  R  R  K  K  W  *  I  H  K  *  D  G  I  I  G  G  F  K  M  P  F  H  E  I  K  *  *  S  T  S  N  N  L  </second_frame>
            <third_frame>   G  G  G  N  K  Y  R  D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  H  :  V  W  A  E  G  S  V  E  D  K  V  Q  R  L  L  K  T  W  E  M  E  L  V  H  K  I  D  P  N  E  M  K  S  V  D  P  T  K  F  K  K  S  V  N   : G  R  K  G  L  T  P  E  E  A  V  K  L  G  G  G  Y  N  T  F  L  Q  T  S  L  P  E  N  L  R  V  Y  N  P  E  D  E  T  F  E  S  S  Q  N  V  F  R  S  I  F  V  R  G  F  A  I  E  V  L  H  V  Y  S  G  P  P  E  I  V  Y  K  F  R  H  W  G  Y  M  D  G  P  F  K  G  Y  V  A  T  G  Q  L  V  E  L  F  G  I  G  I  F  E  :  L  E  K  E  S  N  K  I  V  K  A  E  F  F  F  D  R  G  E  L  L  G  P  L  M  K  G  G  K  N  G  E  S  T  S  E  M  A  L  L  E  D  S  K  C  P  F  M  K  *  N  N  N  L  L  A  T  T  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33900" stop="33781"/>
                    <exon start="33333" stop="33201"/>
                    <exon start="33000" stop="32699"/>
                    <exon start="32606" stop="32457"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>702</number_coding_nucleotides>
                  <number_encoded_amino_acids>234</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGGNKYRDYLSDEELKNTKWRNGPPTYDVVDKLFEQERTHVWAEGSVEDKVQRLLKTWEMELVHKIDPNEMKSVDPTKFKKSVNGRKGLTPEEAVKLGGGYNTFLQTSLPENLRVYNPEDETFESSQNVFRSIFVRGFAIEVLHVYSGPPEIVYKFRHWGYMDGPFKGYVATGQLVELFGIGIFELEKESNKIVKAEFFFDRGELLGPLMKGGKNGESTSEMALLEDSKCPFMK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33879" e_stop="33781"/>
            <exon e_start="33333" e_stop="32318"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.987" acc_prob="0.999" e_score="0.990"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="33879" e_stop="33781" e_length="99"/>
          </exon>
          <intron i_serial="1" don_prob="0.987" acc_prob="0.999">
            <gDNA_intron_boundary i_start="33780" i_stop="33334" i_length="447"/>
          </intron>
          <exon e_serial="2" e_score="0.984">
            <gDNA_exon_boundary e_start="33333" e_stop="32318" e_length="1016"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33879" stop="33781"/>
              <exon start="33333" stop="32318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U317184" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACTACTTGAGTGATGAAGAGCTCAAAAACACAAAATGGAGAAATGGACCTCCTACTTATGATGTTGTTGATAAGCTCTTTGAACAAGAAAGAACTCAT : GTATGGGCTGAAGGATCAGTTGAAGATAAAGTACAAAGGCTATTGAAGACTTGGGAAATGGAATTAGTTCACAAAATAGATCCTAATGAGATGAAATCTGTTGATCCAACAAAGTTCAAGAAGAGTGTCAATGGTACACTTTTGTTACATTTTTTGTCTATATATAATTTCCTTCATTATAATACAGGGGAAAAAGAGAGTGACTAACCTAAATGCAAGTGTTACTCTTATTAAAAAGGGAAGTTTTTGTTATATACAAATACAGGGTCATGCTAGTTTTCTCTGTATCGTTTTTTGATCGTTTGAGAGAATTTTCTCTAATATTTTTTATAGGAAGGAAAGGGTTAACACCGGAAGAAGCTGTAAAGCTTGGTGGTGGTTACAACACATTCCTACAAACTTCATTGCCAGAAAATCTAAGAGTCTATAATCCTGAGGATGAAACATTTGAATCATCACAAAATGTATTTAGATCAATATTTGTACGTGGATTCGCGATCGAAGTCCTTCATGTTTATTCAGGACCACCAGAAATTGTGTACAAGTTTAGGCATTGGGGTTACATGGATGGTCCATTTAAAGGATATGTTGCAACTGGACAACTTGTTGAGCTCTTTGGAATTGGCATTTTTGAAGTACTTACCAAAAAATTACCTTACTTTTTTTTTTTCAAAAAATAAATAAATTATATTTTTGAATTAATTGAATTGTGTTGTGTTTGAAACAGTTGGAGAAAGAGAGTAACAAGATTGTTAAGGCAGAGTTCTTTTTTGATAGAGGAGAATTGCTTGGGCCACTTATGAAAGGAGGAAAAAATGGTGAATCCACAAGTGAGATGGCATTATTGGAGGATTCAAAATGCCCTTTCATGAAATAAAATAATAATCTACTAGCAACAACTTGAAATAAGTCTATGGTTATGTTCTATTTTTTAATAGAAATAGGTGCAAAAAGTGTAATTTCCCTTTGAAGTTTATTAATGTTTCTTCAACCATCAAATTTTCATTAGAGAATGT</gDNA_template>
            <first_frame> D  Y  L  S  D  E  E  L  K  N  T  K  W  R  N  G  P  P  T  Y  D  V  V  D  K  L  F  E  Q  E  R  T  H  :  V  W  A  E  G  S  V  E  D  K  V  Q  R  L  L  K  T  W  E  M  E  L  V  H  K  I  D  P  N  E  M  K  S  V  D  P  T  K  F  K  K  S  V  N  G  T  L  L  L  H  F  L  S  I  Y  N  F  L  H  Y  N  T  G  E  K  E  S  D  *  P  K  C  K  C  Y  S  Y  *  K  G  K  F  L  L  Y  T  N  T  G  S  C  *  F  S  L  Y  R  F  L  I  V  *  E  N  F  L  *  Y  F  L  *  E  G  K  G  *  H  R  K  K  L  *  S  L  V  V  V  T  T  H  S  Y  K  L  H  C  Q  K  I  *  E  S  I  I  L  R  M  K  H  L  N  H  H  K  M  Y  L  D  Q  Y  L  Y  V  D  S  R  S  K  S  F  M  F  I  Q  D  H  Q  K  L  C  T  S  L  G  I  G  V  T  W  M  V  H  L  K  D  M  L  Q  L  D  N  L  L  S  S  L  E  L  A  F  L  K  Y  L  P  K  N  Y  L  T  F  F  F  S  K  N  K  *  I  I  F  L  N  *  L  N  C  V  V  F  E  T  V  G  E  R  E  *  Q  D  C  *  G  R  V  L  F  *  *  R  R  I  A  W  A  T  Y  E  R  R  K  K  W  *  I  H  K  *  D  G  I  I  G  G  F  K  M  P  F  H  E  I  K  *  *  S  T  S  N  N  L  K  *  V  Y  G  Y  V  L  F  F  N  R  N  R  C  K  K  C  N  F  P  L  K  F  I  N  V  S  S  T  I  K  F  S  L  E  N   </first_frame>
            <second_frame>  T  T  *  V  M  K  S  S  K  T  Q  N  G  E  M  D  L  L  L  M  M  L  L  I  S  S  L  N  K  K  E  L  M :   Y  G  L  K  D  Q  L  K  I  K  Y  K  G  Y  *  R  L  G  K  W  N  *  F  T  K  *  I  L  M  R  *  N  L  L  I  Q  Q  S  S  R  R  V  S  M  V  H  F  C  Y  I  F  C  L  Y  I  I  S  F  I  I  I  Q  G  K  K  R  V  T  N  L  N  A  S  V  T  L  I  K  K  G  S  F  C  Y  I  Q  I  Q  G  H  A  S  F  L  C  I  V  F  *  S  F  E  R  I  F  S  N  I  F  Y  R  K  E  R  V  N  T  G  R  S  C  K  A  W  W  W  L  Q  H  I  P  T  N  F  I  A  R  K  S  K  S  L  *  S  *  G  *  N  I  *  I  I  T  K  C  I  *  I  N  I  C  T  W  I  R  D  R  S  P  S  C  L  F  R  T  T  R  N  C  V  Q  V  *  A  L  G  L  H  G  W  S  I  *  R  I  C  C  N  W  T  T  C  *  A  L  W  N  W  H  F  *  S  T  Y  Q  K  I  T  L  L  F  F  F  Q  K  I  N  K  L  Y  F  *  I  N  *  I  V  L  C  L  K  Q  L  E  K  E  S  N  K  I  V  K  A  E  F  F  F  D  R  G  E  L  L  G  P  L  M  K  G  G  K  N  G  E  S  T  S  E  M  A  L  L  E  D  S  K  C  P  F  M  K  *  N  N  N  L  L  A  T  T  *  N  K  S  M  V  M  F  Y  F  L  I  E  I  G  A  K  S  V  I  S  L  *  S  L  L  M  F  L  Q  P  S  N  F  H  *  R  M  </second_frame>
            <third_frame>   L  L  E  *  *  R  A  Q  K  H  K  M  E  K  W  T  S  Y  L  *  C  C  *  *  A  L  *  T  R  K  N  S   : C  M  G  *  R  I  S  *  R  *  S  T  K  A  I  E  D  L  G  N  G  I  S  S  Q  N  R  S  *  *  D  E  I  C  *  S  N  K  V  Q  E  E  C  Q  W  Y  T  F  V  T  F  F  V  Y  I  *  F  P  S  L  *  Y  R  G  K  R  E  *  L  T  *  M  Q  V  L  L  L  L  K  R  E  V  F  V  I  Y  K  Y  R  V  M  L  V  F  S  V  S  F  F  D  R  L  R  E  F  S  L  I  F  F  I  G  R  K  G  L  T  P  E  E  A  V  K  L  G  G  G  Y  N  T  F  L  Q  T  S  L  P  E  N  L  R  V  Y  N  P  E  D  E  T  F  E  S  S  Q  N  V  F  R  S  I  F  V  R  G  F  A  I  E  V  L  H  V  Y  S  G  P  P  E  I  V  Y  K  F  R  H  W  G  Y  M  D  G  P  F  K  G  Y  V  A  T  G  Q  L  V  E  L  F  G  I  G  I  F  E  V  L  T  K  K  L  P  Y  F  F  F  F  K  K  *  I  N  Y  I  F  E  L  I  E  L  C  C  V  *  N  S  W  R  K  R  V  T  R  L  L  R  Q  S  S  F  L  I  E  E  N  C  L  G  H  L  *  K  E  E  K  M  V  N  P  Q  V  R  W  H  Y  W  R  I  Q  N  A  L  S  *  N  K  I  I  I  Y  *  Q  Q  L  E  I  S  L  W  L  C  S  I  F  *  *  K  *  V  Q  K  V  *  F  P  F  E  V  Y  *  C  F  F  N  H  Q  I  F  I  R  E  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33121" stop="32654"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>465</number_coding_nucleotides>
                  <number_encoded_amino_acids>155</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MQVLLLLKREVFVIYKYRVMLVFSVSFFDRLREFSLIFFIGRKGLTPEEAVKLGGGYNTFLQTSLPENLRVYNPEDETFESSQNVFRSIFVRGFAIEVLHVYSGPPEIVYKFRHWGYMDGPFKGYVATGQLVELFGIGIFEVLTKKLPYFFFFKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33879" stop="33781"/>
                    <exon start="33333" stop="33127"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DYLSDEELKNTKWRNGPPTYDVVDKLFEQERTHVWAEGSVEDKVQRLLKTWEMELVHKIDPNEMKSVDPTKFKKSVNGTLLLHFLSIYNFLHYNTGEKESD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="36522" PGL_stop="37032"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36522" e_stop="37032"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="36522" e_stop="37032" e_length="511"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36522" stop="37032"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U328146" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTTTTCCTCCCACCATGAATATTAATAACAATACCAACGCCGCCGCCAACTCCGCCGCCGTCGCCGTCAAGAAAACTCAAGGGCGGAGGAAAATAGCAATTAAACCAATAGCAAATCAAAACAGTAGGCACGTTACCTTTAGCAAACGCCGTTTAGGTCTCTTCAAAAAAGCTAGCGAACTTTGCATTTTAACCGGCGCTGAAATCGCTATTATGGTTCAGTCGCTAAAACGACAGCGTTTGTTCACTTTTGGTCATCCGAGCGCCGACGCCGTCATTAACCGGTACCTTACCGGAAAATCAGAGGAACAAAAACCGGCGGTCGATGATCAGTTGAACTATGTGCAACAGAGCAATGAATATTATTCTCAGATCTGTAGAGAATTGGAGTTGGAGAAGAAGGTAAAGGAGGAGATTGTTATTGATGAATCGAAGATGGTGAATGGTGGTAGTAGTAGTAATAATGGAGGAGGAGGATTTTGGTGGAATGAATCGATTGATGAAATGGGA</gDNA_template>
            <first_frame> T  F  S  S  H  H  E  Y  *  *  Q  Y  Q  R  R  R  Q  L  R  R  R  R  R  Q  E  N  S  R  A  E  E  N  S  N  *  T  N  S  K  S  K  Q  *  A  R  Y  L  *  Q  T  P  F  R  S  L  Q  K  S  *  R  T  L  H  F  N  R  R  *  N  R  Y  Y  G  S  V  A  K  T  T  A  F  V  H  F  W  S  S  E  R  R  R  R  H  *  P  V  P  Y  R  K  I  R  G  T  K  T  G  G  R  *  S  V  E  L  C  A  T  E  Q  *  I  L  F  S  D  L  *  R  I  G  V  G  E  E  G  K  G  G  D  C  Y  *  *  I  E  D  G  E  W  W  *  *  *  *  *  W  R  R  R  I  L  V  E  *  I  D  *  *  N  G  </first_frame>
            <second_frame>  P  F  P  P  T  M  N  I  N  N  N  T  N  A  A  A  N  S  A  A  V  A  V  K  K  T  Q  G  R  R  K  I  A  I  K  P  I  A  N  Q  N  S  R  H  V  T  F  S  K  R  R  L  G  L  F  K  K  A  S  E  L  C  I  L  T  G  A  E  I  A  I  M  V  Q  S  L  K  R  Q  R  L  F  T  F  G  H  P  S  A  D  A  V  I  N  R  Y  L  T  G  K  S  E  E  Q  K  P  A  V  D  D  Q  L  N  Y  V  Q  Q  S  N  E  Y  Y  S  Q  I  C  R  E  L  E  L  E  K  K  V  K  E  E  I  V  I  D  E  S  K  M  V  N  G  G  S  S  S  N  N  G  G  G  G  F  W  W  N  E  S  I  D  E  M  G </second_frame>
            <third_frame>   L  F  L  P  P  *  I  L  I  T  I  P  T  P  P  P  T  P  P  P  S  P  S  R  K  L  K  G  G  G  K  *  Q  L  N  Q  *  Q  I  K  T  V  G  T  L  P  L  A  N  A  V  *  V  S  S  K  K  L  A  N  F  A  F  *  P  A  L  K  S  L  L  W  F  S  R  *  N  D  S  V  C  S  L  L  V  I  R  A  P  T  P  S  L  T  G  T  L  P  E  N  Q  R  N  K  N  R  R  S  M  I  S  *  T  M  C  N  R  A  M  N  I  I  L  R  S  V  E  N  W  S  W  R  R  R  *  R  R  R  L  L  L  M  N  R  R  W  *  M  V  V  V  V  V  I  M  E  E  E  D  F  G  G  M  N  R  L  M  K  W   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0014G22.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36523" stop="37032"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>510</number_coding_nucleotides>
                  <number_encoded_amino_acids>170</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPPTMNINNNTNAAANSAAVAVKKTQGRRKIAIKPIANQNSRHVTFSKRRLGLFKKASELCILTGAEIAIMVQSLKRQRLFTFGHPSADAVINRYLTGKSEEQKPAVDDQLNYVQQSNEYYSQICRELELEKKVKEEIVIDESKMVNGGSSSNNGGGGFWWNESIDEMG</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 11 chains have been computed
$ 
$ memory statistics:
$ 67712 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 8464 bytes was the average size of a spliced alignment
$ 8552 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2850 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 13 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 20:41:49
-->
