<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-15 21:00:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M1726" ref_strand="+" ref_description="SGN-M1726 T1050 [cos_markers]">
      <seq>acgggagggaggagttctatttttctgtgaactccgctaatcattcttcttttcaaattactacattcggagggagaaaaaagccctaaactttggtctggagaggtcgaaaatggtggatgggtcgaataacgtggatgtagagaagctgatctccttcagtaaggatcttgttcagtttttgaaagaagataaagatgtcagcttcttgaatcagtgtaaagagcaatttaatgcccttcaatcacactgccaatctgagtaccaggctcttcagaattccattcaagattatcaaggaaagataaatgcatgtaagcagagaacaacagaagcacaatctgaagctgctgcagaggctgaaatagataagctgcagaaagagttagaacaggagatccagagagaacaactgcttagagaagaacttagagttataaccgatgagatcaatgatttagatcgccaaagagactctattgaggagcacaggaaattgctcaagaaaattgagcaagatcatcttcgagctgagatgaagctatcactgtatgcttctgtcacaagtatcatcccggacttggatgatcaatccaaaatatcaggccatattgtggagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0039E17-6jMwk/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0039E17.1" temp_strand="-" temp_description="C04SLm0039E17.1  CU326400.10 htgs_phase:3 submitted_to_sgn_as:C04SLm0039E17 sequenced_by:sanger upload_account_name:uk">
        <position start="31179" stop="27057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="30879" g_stop="30590" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="290" r_length="290" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="28936" g_stop="28791" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="434" r_length="144" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88">
            <donor d_prob="0.356" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28702" g_stop="28603" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="534" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="28602" i_stop="27435" i_length="1168">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27434" g_stop="27361" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="608" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="27360" i_stop="27248" i_length="113">
            <donor d_prob="0.900" d_score="1.00"/>
            <acceptor a_prob="0.145" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27247" g_stop="27233" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="609" r_stop="623" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0039E17.1" gen_strand="-" ref_id="SGN-M1726" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0039E17.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M1726" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="30879" e_stop="30590"/>
          <exon e_start="28936" e_stop="28791"/>
          <exon e_start="28702" e_stop="28603"/>
          <exon e_start="27434" e_stop="27361"/>
          <exon e_start="27247" e_stop="27233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAGGTGGGGTTCTTGTATTTCGTTTTTAATTTTGTAAAATTGAGGGTTTGTTGAATTTCTTAGTGGCTTAAAGTTTGAATCTTTCTCAGTTGGAGATCTCCCCAATCCTCAGAGTCATAAGACTATGTGATAAAGAATAAGTTAGCTTCAAGATTGAACCTTTGGAATTGTGTGTATAATGTTCTTACTGTTGAATTTTGATATTTTTGTTTTGGAAATGGTAGGATGGTTACTAAGTGAACCTCTTTCTGTGTTTACTTGAAGCATTTGGCCATGAAAATTGTGAGTATTTGAAAATTGGAGTTGGGTTTGGCCATGAATACAAATTCTGGGTTGTTTCTGAATTTTTATGATTGATTTGGAGTGAAGAAAGTTTTTGGTGTTTTTCAAATTCTTGAAAATGCAAGTTGAATTTTATGGCCAAATGCTCCCTTAGCTAATGGATTATCCCAAGAGACAACCTACTGGTCAGGAGGTTACAATTTAAGCTGCAGATCTCGGTGGTGTCACTCATACTAGCTTAGTAGTGCCTGACTGGACCTTCCCTACTTCCTATGAACAATGTGAGAGAGAAAAAACATTGGCTTAAAGATTGCAACTTTTAATCTGATATAGACTGAGTTTACAATGTGCTTTGCTGTTTAATGCAGTTTCTTTACTCCTCGTAGCACTTCTGCTTTATAGATACTTCTTTACACTTGAAACCTTGCTTTTTAGTGATATCTTTTTTGGATGTTTCATTCAGTAACATTCCTTTAATGAAAGAGAAAAATGGGGGTTGAATCAACTTCTTATTAGTTTAATTAGTTTAAAGATTGAACCCAAGGGACATCTGCCTTGAGGCTGTAAGTTGAACCACAGTGCATAGTTCAAACCTCAGGGTCACCACGACGCAATAGGATCTTCCTGGATCCTTAAAAACTATGTAGTGAAAAAAAAACTCGGCGTAAGATTGGAATTTTGAATCAATGTAGACAAACTTTACAATGTTCTTGCATCTGGATGATTCTTTTTCTTAGTACCAATTATTAGTGGATAAGTCTCTTAACGTTGACCTGAAACACCATTTTCTGTTTGCTAGCTTACTGGAGTGTCAGGTCAAAATTTCTTCTTGCAAAATATCGTCATTTCTGGATGTTTCTTTTATTAGTAACATTTTGGGGAGTGTGGAGTCTCTGTCTCTGTCTTTTATACCTTCATGAGTACTACTGCTGGAATCTGGATCCTCTCACGCCAACCCTCATGAGATTTTTTTGGAATGTACTATATATAGTGTAAAAATTGGTGCTATTACCTACTTATTCCTGATAGTTTTGGTGATATTTCTACTTTTGGTGCAGTTTGTTTCCGAGTTGAAGTCCTTTTAGCCAATTATAATGCAAAAATATGTAGAGGCCCAGTACGTGTGTCTAGTTTAATGATTAGCTCAACAGACCACTACTTTGGTTCCTTTCGAGGGCCCAACCCTGCTCCTATGATTTCTCTCTGGCCTCAGACATACATGTTGTTTTTCTTATTAAATAAGTTGGAAATTGGAATTATGTTGGTATTAAGTGTCTTTGTTCAAGCATTAATTTATGATTGTACTGGGAGATGTTCGGATTTGTGAATTTGAAAGTATTAAATGACTAATTTCAAGTCATTGCATACACTCAGATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAAGTATATTAAACAACGTTAGATGCATGAATTTGTATTTCTCAGATAATTTAGTGTTATGCTTACTGATTGACACCTTTTTTAAACACAGTTATAACCGATGAGATCAATGATTTAGATCGCCAAAGAGACTCTATTGAGGAGCACAGGAAATTGCTCAAGAAAATTGAGCAAGATCATCTTCGAGCTGAGTAAGTAATCATAACCTCTTGTACTTTAATATGTTTATGATTATGTCAGGCATTTGCTTCCAACATACTTCTACAAATTTCGTTGAAACAATCCCATCGTGGCATTTGTTGACTCCTCCTCATCCTCTAAGTTCAAACCGTGCCTGCTGGCCCTTGAGGTTTCTCGGTCATCAAAAAAGAAAAAGATATTGATATGTTGACTCGTTAAGCTTTTGCAACTTTATGCTGTCAAAGTATCTCAAGAGGTTGGGAGGGTCTGACATGTTTTCATCATATTCTGTGGATAATTTGCCTACTCAGTTCCATATTGCAACATGGTACACATATTTGAATGTATCTGCCATATGCCAATCACTGTTAAGATAGTCCATTAACATCCCATCTGGTGCGACCAAGTTCTACCACATTACATCTTTGGATGTCTAGGTGTAACTATCGCCCAACTAAGTATTTCTACAAATTGAATATACACCTGATTTGACTTTGTCTGGACGCAACCAAACATACCCCTCCTTCCCACTTTATGGGATACACTTTTCTTTTTAGCCCGTTCCGAAAAGAATAACACATTTCTAAATTTGTAAACAATTAACTTTACACTTCCCATTTGACCCTTAATGAAAAGCTTTTATGACCATCCAGATTTTATGGCATTTTTAAGACCACAAGTTTCAAAAGTTCTATAGACACAAATGTTATGACATGTTTAAGACCACAAGTTTAGGAAGTCTTGATTTCTCTTTTAAACTCTATGACTATTCAAACTATATCACCTAATTTTGGAACTGAAGGAGTAGTAATTTTTTAAGGTTTACCTCTGCTGCAGTTTTACATGAACATCATGCGAGGATTGAAATTTATTAGACGTTTTACTTTTTTTCTTTAGAAGCTTACACTCTGTAGACACACAGCCGCTCGCAGAATATCCTGTTGCAGGGATACCAGTGTTTTTATCCAGAAAGTTCCTTTTCCTCTTTCTTTCTCTTTAAAATGCTTAGTATGAAAGTTTTATTCCCAGTGTGCGATTGATGTTTGGTAATTTGTGTTAATATTTAGTGTGATCTTTCCTTGTCTCTCTCTAGCTACTATTGTTTGTAATGCATCTTCTTTAAGGGCTGTTTCACGTATATTGTTTAATTTTGAGCAATTTTCTCATCTTATTTTGTAGGATGAAGCTATCACTGTATGCTTCTGTCACAAGTATCATCCCGGACTTGGATGATCAATCCAAAATATCAGGCCGTATCCTAATTACTTTGTTTGCTAAGCTAACATTTCTTATCCTTTTCTAAATTCACCTTGTGTCTGTTTTTTCGAGATTGTGCAGCAATTTAGTTCACCTTGACCTATTCTAGATATTGTGGAGAGAG</genome_strand>
        <mrna_strand>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAG--AG........................................................................................TTATAACCGATGAGATCAATGATTTAGATCGCCAAAGAGACTCTATTGAGGAGCACAGGAAATTGCTCAAGAAAATTGAGCAAGATCATCTTCGAGCTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAGCTATCACTGTATGCTTCTGTCACAAGTATCATCCCGGACTTGGATGATCAATCCAAAATATCAGGCC.................................................................................................................ATATTGTGGAGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>1</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="30879" PGL_stop="27233"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="30879" e_stop="30590"/>
            <exon e_start="28936" e_stop="28791"/>
            <exon e_start="28702" e_stop="28603"/>
            <exon e_start="27434" e_stop="27361"/>
            <exon e_start="27247" e_stop="27233"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.990" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.356" acc_prob="0.992" e_score="0.979"/>
          <exon-intron don_prob="1.000" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.900" acc_prob="0.145" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="30879" e_stop="30590" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.990" acc_prob="0.944">
            <gDNA_intron_boundary i_start="30589" i_stop="28937" i_length="1653"/>
          </intron>
          <exon e_serial="2" e_score="0.979">
            <gDNA_exon_boundary e_start="28936" e_stop="28791" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.356" acc_prob="0.992">
            <gDNA_intron_boundary i_start="28790" i_stop="28703" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28702" e_stop="28603" e_length="100"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.990">
            <gDNA_intron_boundary i_start="28602" i_stop="27435" i_length="1168"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27434" e_stop="27361" e_length="74"/>
          </exon>
          <intron i_serial="4" don_prob="0.900" acc_prob="0.145">
            <gDNA_intron_boundary i_start="27360" i_stop="27248" i_length="113"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27247" e_stop="27233" e_length="15"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="30879" stop="30590"/>
              <exon start="28936" stop="28791"/>
              <exon start="28702" stop="28603"/>
              <exon start="27434" stop="27361"/>
              <exon start="27247" stop="27233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M1726" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACGGGAGGGAGGAGTTCTATTTTTCTGTGAACTCCGCTAATCATTCTTCTTTTCAAATTACTACATTCGGAGGGAGAAAAAAGCCCTAAACTTTGGTCTGGAGAGGTCGAAAATGGTGGATGGGTCGAATAACGTGGATGTAGAGAAGCTGATCTCCTTCAGTAAGGATCTTGTTCAGTTTTTGAAAGAAGATAAAGATGTCAGCTTCTTGAATCAGTGTAAAGAGCAATTTAATGCCCTTCAATCACACTGCCAATCTGAGTACCAGGCTCTTCAGAATTCCATTCAAG : ATTATCAAGGAAAGATAAATGCATGTAAGCAGAGAACAACAGAAGCACAATCTGAAGCTGCTGCAGAGGCTGAAATAGATAAGCTGCAGAAAGAGTTAGAACAGGAGATCCAGAGAGAACAACTGCTTAGAGAAGAACTTAGATAA : TTATAACCGATGAGATCAATGATTTAGATCGCCAAAGAGACTCTATTGAGGAGCACAGGAAATTGCTCAAGAAAATTGAGCAAGATCATCTTCGAGCTGA : GATGAAGCTATCACTGTATGCTTCTGTCACAAGTATCATCCCGGACTTGGATGATCAATCCAAAATATCAGGCC : ATATTGTGGAGAGAG</gDNA_template>
            <first_frame> T  G  G  R  S  S  I  F  L  *  T  P  L  I  I  L  L  F  K  L  L  H  S  E  G  E  K  S  P  K  L  W  S  G  E  V  E  N  G  G  W  V  E  *  R  G  C  R  E  A  D  L  L  Q  *  G  S  C  S  V  F  E  R  R  *  R  C  Q  L  L  E  S  V  *  R  A  I  *  C  P  S  I  T  L  P  I  *  V  P  G  S  S  E  F  H  S  R :   L  S  R  K  D  K  C  M  *  A  E  N  N  R  S  T  I  *  S  C  C  R  G  *  N  R  *  A  A  E  R  V  R  T  G  D  P  E  R  T  T  A  *  R  R  T  *  I   : I  I  T  D  E  I  N  D  L  D  R  Q  R  D  S  I  E  E  H  R  K  L  L  K  K  I  E  Q  D  H  L  R  A  E :   M  K  L  S  L  Y  A  S  V  T  S  I  I  P  D  L  D  D  Q  S  K  I  S  G   : H  I  V  E  R  </first_frame>
            <second_frame>  R  E  G  G  V  L  F  F  C  E  L  R  *  S  F  F  F  S  N  Y  Y  I  R  R  E  K  K  A  L  N  F  G  L  E  R  S  K  M  V  D  G  S  N  N  V  D  V  E  K  L  I  S  F  S  K  D  L  V  Q  F  L  K  E  D  K  D  V  S  F  L  N  Q  C  K  E  Q  F  N  A  L  Q  S  H  C  Q  S  E  Y  Q  A  L  Q  N  S  I  Q   : D  Y  Q  G  K  I  N  A  C  K  Q  R  T  T  E  A  Q  S  E  A  A  A  E  A  E  I  D  K  L  Q  K  E  L  E  Q  E  I  Q  R  E  Q  L  L  R  E  E  L  R  *  :  L  *  P  M  R  S  M  I  *  I  A  K  E  T  L  L  R  S  T  G  N  C  S  R  K  L  S  K  I  I  F  E  L   : R  *  S  Y  H  C  M  L  L  S  Q  V  S  S  R  T  W  M  I  N  P  K  Y  Q  A  :  I  L  W  R  E </second_frame>
            <third_frame>   G  R  E  E  F  Y  F  S  V  N  S  A  N  H  S  S  F  Q  I  T  T  F  G  G  R  K  K  P  *  T  L  V  W  R  G  R  K  W  W  M  G  R  I  T  W  M  *  R  S  *  S  P  S  V  R  I  L  F  S  F  *  K  K  I  K  M  S  A  S  *  I  S  V  K  S  N  L  M  P  F  N  H  T  A  N  L  S  T  R  L  F  R  I  P  F  K  :  I  I  K  E  R  *  M  H  V  S  R  E  Q  Q  K  H  N  L  K  L  L  Q  R  L  K  *  I  S  C  R  K  S  *  N  R  R  S  R  E  N  N  C  L  E  K  N  L  D  N :   Y  N  R  *  D  Q  *  F  R  S  P  K  R  L  Y  *  G  A  Q  E  I  A  Q  E  N  *  A  R  S  S  S  S  *  :  D  E  A  I  T  V  C  F  C  H  K  Y  H  P  G  L  G  *  S  I  Q  N  I  R  P :   Y  C  G  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30839" stop="30590"/>
                    <exon start="28936" stop="28791"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFFSNYYIRREKKALNFGLERSKMVDGSNNVDVEKLISFSKDLVQFLKEDKDVSFLNQCKEQFNALQSHCQSEYQALQNSIQDYQGKINACKQRTTEAQSEAAAEAEIDKLQKELEQEIQREQLLREELR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0039E17.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28794" stop="28791"/>
                    <exon start="28702" stop="28603"/>
                    <exon start="27434" stop="27361"/>
                    <exon start="27247" stop="27234"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIITDEINDLDRQRDSIEEHRKLLKKIEQDHLRAEMKLSLYASVTSIIPDLDDQSKISGHIVER</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 15 chains have been computed
$ 
$ memory statistics:
$ 2024 bytes spliced alignments in total
$ 1 spliced alignments have been stored
$ 2024 bytes was the average size of a spliced alignment
$ 5656 bytes predicted gene locations in total
$ 1 predicted gene locations have been stored
$ 5656 bytes was the average size of a predicted gene location
$ 1 megabytes was the average size of the backtrace matrix
$ 16 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-15 21:00:46
-->
