<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-02-20 11:31:09"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E316545" ref_strand="+" ref_description="SGN-E316545 [cTOA-25-B17]">
      <seq>attggcgaagaaagcgaatggaagcttaaatggtgggaacagcatgacaccttcgatcaacaagttgtcctaaaagtcttactcccagatattctatgaggtttttggaggagaggaagactcttcccttatgaaattaaaaagaggagttctcaagctgatgaatatccaatcatttggctatgctgtctccgtcgctggctgtcgtcaccaggcaatccgaatcatctctccctcactctctctccatctcttctccctcagttttgatttgtctttattgttgatggctctctttctgtcttagctctcaaccttgcctctcatcagtttcaatagtcgcgggcttacatactcgagatcagaaaataactgagatggatcactcacatgggctcttgtactggtagataacagtattatgtcccctgtaccatcccatccttgaccttggagcagatattgtgatgcattcagcagctaagtctatgtttagccatagtgatctgatgggggcgtattgtcatcataggagaaaggtttttcttctttatatggtttcaagaaggtgcagtcctacccccatttgattgctggctttgtttaagaagcattaaaatgatggtgctgcatgtagaaaaacaatagcgtctagctctncagagcctggttgacataagcatggagtcattactcctctcacagagcaattgacaaagccattcttccattagccaatgccatgatttgcattactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="+" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="8471" stop="11747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="8771" g_stop="9135" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="365" r_length="365" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="9136" i_stop="9687" i_length="552">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="9688" g_stop="9781" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="459" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="9782" i_stop="9871" i_length="90">
            <donor d_prob="0.855" d_score="1.00"/>
            <acceptor a_prob="0.889" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="9872" g_stop="9977" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="565" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="9978" i_stop="11136" i_length="1159">
            <donor d_prob="0.295" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11137" g_stop="11219" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="566" r_stop="648" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11220" i_stop="11337" i_length="118">
            <donor d_prob="0.921" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11338" g_stop="11447" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="758" r_length="110" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="+" ref_id="SGN-E316545" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E316545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="8771" e_stop="9135"/>
          <exon e_start="9688" e_stop="9781"/>
          <exon e_start="9872" e_stop="9977"/>
          <exon e_start="11137" e_stop="11219"/>
          <exon e_start="11338" e_stop="11447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGCGAAGAAAGCGAATGGAAGCTTAAATGGTGGGAACAGCATGACACCTTCGATCAACAAGTTGTCCTAAAAGTCTTACTCCCAGATATTCTATGAGGTTTTTGGAGGAGAGGAAGACTCTTCCCTTATGAAATTAAAAAGAGGAGTTCTCAAGCTGATGAATATCCAATCATTTGGCTATGCTGTCTCCGTCGCTGGCTGTCGTCACCAGGCAATCCGAATCATCTCTCCCTCACTCTCTCTCCATCTCTTCTCCCTCAGTTTTGATTTGTCTTTATTGTTGATGGCTCTCTTTCTGTCTTAGCTCTCAACCTTGCCTCTCATCAGTTTCAATAGTCGCGGGCTTACATACTCGAGATCAGGTTTGGTTTGGTTTGGTTTTTCTCCCTTTTCATTATTTTTCTGTTTTAGTTTTTTGTTGATTTTCAATTTCTATTAACTGTTTTGTGCATCTTGTGGTTTGCTTTAGATTATGTTCAATTTTTTTAATGATTCTTATAATACAAGTACCAAACTGTATTTGTATGTTATGGGGTTGAGATGGAATATTTAGCATCCATCGCCTCAGTGCGTTTGATTAATTTAGCAGAGTGAGGGTTGTTATACTTTACTACTTCCTCAGAAAATGACACTGCTTTATAATTCTAATGAAAATTTGCCTTTTCGTTCCCTTCTAATGTGTACACACTGTCATTCTTTGGTGGATTTAGTAATAATCATGTTGGAGTAAACCGACAAGATTATGTAATAAGTGGGAGGCTTCTGGCTATTGTTCATTTGGCAGCACATGTCATTTGTCGTGGATTATGAGAATATTGTTTATCCATTTTCATGGCTGCGGATGTTGAAGTCTGTTCAATTTCAATGGATAATTACTTACCTTTTTTATGTTGTTTCCCTATAATCGTTTTCAGAAAATAACTGAGATGGATCACTCACATGGGCTCTTGTACTGGTAGATAACAGTATTATGTCCCCTGTACCATCCCATCCTTGACCTTGGAGCAGGCATGTATACTTCTTGTTCTGATAACATGAACCTTCGTGCGGTAACATTCTTAAGGTGCTGGTTACCTTAAATGGTCCGTTATTTTTCAGATATTGTGATGCATTCAGCAGCTAAGTCTATGTTTAGCCATAGTGATCTGATGGGGGCGTATTGTCATCATAGGAGAAAGGTTTTTCTTCTTTATATGGTTTCAAGGTTTGATTTACGCTTATCATATGTTTTCTCTTCATCCTTCGTGCCCTTGAGGGTCTTTCATGGACAAAACTATCAGATCACCCTGATTGAACGGAAAAAAGGAAAGAAAAACCTCTTATTAAATTGCTAGTCAAGCAGATTTTTTTAACCCTCCCTAGAAGCTACCACCCCTTTTGCTCCTCTTGGTAACTCGAACTCGCAACCTTTAGGTTGGAAGTGAGGGGTGCTTACCATCCGAGCAACTCCCTCTCGTCTCGTCTAGCAGATTCAATTACCCAAAGTCTCAATTACTTACAATTGGTCTCTTGGGAAATTATTAATTTACCTTAATGGAACTATCTAAACAATAGTGGCTTGGAGTGCAAAATTCTTATTTTACTTGGAAACAGATAAGAGTACATGCTATTATTCTAAAACATATATATCTTTTTATAAAGGTGACAAACTATGTACTCCTTCCGTTTCAATTTGTTTGTCTTACTTTCCTTTTTAGTCCATTTGAAAAAGAACGCCTCTTTCTTTTTTGTTGATTCTTTAATTTCAACTTTCAACATGACATGATTTAGGCCGCAAGATGAAAGAACATTTTGCTATATTTTACGTATCGTTAATTTAAGACCACAAGATGCAGAAGTCTTCTTTATTTTCTTTTAACTCTGTGCCAAGTCAAAACAAGGCAAACAAATTGAAAGGGAGGGAGTATGTAACTTATGAAAATCAACTTGGCAAAGAATGTGTATGTTGTGCGGAATTTGAGATAATACGAGAAAATATAAACGCGAAAAACAAGACAACAGATTTACGTGGTTCACCAATAAATTGGCTACGTCCACGGGAAGAGAGGGAGCAGTTTTATTATGGAGAGGCAAAAACAGAATTACAGAATAGGGTTTCCCATAGTGTCTATATATATAGTGCTAAGCTACGCCCTAACAGGCTTGGGCCCAACATACAGAATCAACAGAAAATTAAGGGCCCAATACAACAACATTGTATACCGTCGGGCCGGGGGCGTCTCCGCCCCCCGGACCCCAGGCCAGGGGGCGCGTCGCCCCCCTGGACCCCCCGACTCGCTGACCGGTCAGCGAGACCCCCATCCTTTCTGTTTGTAGCGGGTCCGATTCAAGGCATTCAACAGTGTACTTCCTTCAAAATGCAGAAGGTGCAGTCCTACCCCCATTTGATTGCTGGCTTTGTTTAAGAAGCATTAAAATGATGGTGCTGCATGTAGAAAAACAATAGGTATTAAATTTTCCTTGCTTTTAAGTTTTCTATGTTGTTATTACGTGCTAGATCCATTTTGTTTACCGAAGCTGTGAGAGTGACTTGATTGTCAATTTCTTTTTGGCACCGTGAACAGCGTCTAGCTCTCAAGAGCCTGGTTGACATAAGCATGGAGTCATTACTCCTCTCACAGAGCAATTGACAAAGCCATTCTTCCATTAGCCAATGCCATGATTTGCATTACTC</genome_strand>
        <mrna_strand>ATTGGCGAAGAAAGCGAATGGAAGCTTAAATGGTGGGAACAGCATGACACCTTCGATCAACAAGTTGTCCTAAAAGTCTTACTCCCAGATATTCTATGAGGTTTTTGGAGGAGAGGAAGACTCTTCCCTTATGAAATTAAAAAGAGGAGTTCTCAAGCTGATGAATATCCAATCATTTGGCTATGCTGTCTCCGTCGCTGGCTGTCGTCACCAGGCAATCCGAATCATCTCTCCCTCACTCTCTCTCCATCTCTTCTCCCTCAGTTTTGATTTGTCTTTATTGTTGATGGCTCTCTTTCTGTCTTAGCTCTCAACCTTGCCTCTCATCAGTTTCAATAGTCGCGGGCTTACATACTCGAGATCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAACTGAGATGGATCACTCACATGGGCTCTTGTACTGGTAGATAACAGTATTATGTCCCCTGTACCATCCCATCCTTGACCTTGGAGCAG..........................................................................................ATATTGTGATGCATTCAGCAGCTAAGTCTATGTTTAGCCATAGTGATCTGATGGGGGCGTATTGTCATCATAGGAGAAAGGTTTTTCTTCTTTATATGGTTTCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGCAGTCCTACCCCCATTTGATTGCTGGCTTTGTTTAAGAAGCATTAAAATGATGGTGCTGCATGTAGAAAAACAATAG......................................................................................................................CGTCTAGCTCTNCAGAGCCTGGTTGACATAAGCATGGAGTCATTACTCCTCTCACAGAGCAATTGACAAAGCCATTCTTCCATTAGCCAATGCCATGATTTGCATTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E352252" ref_strand="+" ref_description="SGN-E352252 [cTOS-13-D14]">
      <seq>tttggtttgtggaaatggcggtgaattcgagccaagagcaaagccaagattccctgaattttgttaaattacctgacgaaggaaccaaaggtcctctttgtgaatcacatttggatatgttgaacctgaagactcaaatttcaatggatgccctatcaaatggtggaaaccatgccaacctgaaaaatgatagcttagatgcttatggctcatattgtttggccatagatattgacaaaagaaagtttgacgcacctaaatccactgaggaaatgaatgggaatgttaagatggatgactatgtatctagtatgtttcagagagaaatttcatcactgatgggaggaaagttcatgcaacagatgatgaataacagctttgagttgcccaaatttgcatgtaaagataaatttttgaccgagaaggtatatgatacacctagcaacagattgagaaaatacaagcgctctgcatctttcaattcaagaagagttgttctccttttctcagtcatgtcgtgcatggggacgatcgttctcatttatcttactctaagagttagaatgagtggtgattgggctgctaatgtttagaatctacttctcgtccatcgtttgtgaaatgagttctctttcctgcttgtattttatnctaatgtttcatgagtaggaatcgttcttcatctgtacataaagatagcagttagtatacaagttggtttctaatttaagttttctttttttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="33643" stop="26523"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33343" g_stop="33306" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33305" i_stop="31240" i_length="2066">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31239" g_stop="30970" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="308" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30809" g_stop="30713" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="405" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29523" g_stop="29415" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="514" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27053" g_stop="26822" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="746" r_length="232" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E352252" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352252" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33343" e_stop="33306"/>
          <exon e_start="31239" e_stop="30970"/>
          <exon e_start="30809" e_stop="30713"/>
          <exon e_start="29523" e_stop="29415"/>
          <exon e_start="27053" e_stop="26822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAGGTGAGGTTTGTTGCCTTATTGGAATCAATTGAGTTTTCTTAAATAGTACGCTATGTGCTTTTTTGAATCAATTTGAGCTTTTATTGCAGTTTTTGTTCAGTTCAATAGCTGCATTGTGCTGTTCCTGTTGTTTTTTTGGCTCAGATTTTGGTTATTGTTGGAGTTTTGATGTAATTTTTATCGGTTTGAAATGTGTTATCTCAGTCTATATGCTATGAGTGAATAACTGTTATTTCTGTAGAAATTATGGAGGTATGAGTGAGAACGGTTGTTATATTTGAGTTAATTGTGTTTTTTTGTGGTATTATTAATTTGTTGTAAGGAATTTTGATTTCTCTTTGCAAAAGCCTAAGTTCATTGCCGTCATTGAATCTACTGTTTGTGCAGTGAGTTAAATGCTTATATCTGTCATTTCTGTACAACTTATGAAGATAAGTGTTTTTGGAAGTTGTACAAATAGTAATGTGACAGTTCGATCTAATTGAGATGTTTTATTTTAGGCTTTTCTTTTTATTTTGTGTAGATTAAGCTGTATATCGATGTGTTCATTGTTTCCTGATATGGATACGATATTTTTTCTGTTGTAATTTCGCTGTAATTTATTTGATTCAATTTGTTTAGACTGGTTCACTTCAATGTGTTTTATGAATCTTAACTTCTATGTGTACCTAGTGCCAAAATGTTCTTCATGGTCATTGTGGTTGCAAATTTTATTTGTTTCTAGTTATTGAGATACAATTGGAGATATTACAGCTTATAAATGGAGTAAGTGTTGGTGTTTAACTCATATATGTTGTACCATTGTATTTTAGAGTAGATGTTCTTTTAAAGGAACCTTTATTTCCAGTCAGAAAGTGATACTGTGTTGCTTTTACTTCTCTTGTTTCATTAGCAAAGTGATGGTCAAAAGTTGAGGCCAGTTACTATTCTCTAGACTACATTGAACATCAAAAACACTTTGGATTCTATATGAGATTATTCAGCTCTAGGTGTGGATGTTCTTCTTGCACCAATTGAGTTTTGAAAAAGTTCAAATTCTTGGTCACTGTCTCTTAGATATTCTTAATTTTATATTCTATCACTATTTAATGCAAACTGGCGATTAAGCTTAAATGCAAGTCCTACGTTCTGATGCTTTTGTCATTGCTGAACCAATTATTTGATTGGCAAATACTTTGATGTGGTGTGGAAGATTTTATTTGTTTTGTATCTTGTGCCTTATAAGAGAGTGTTCTTGGAGTTTGGATTTTCATTCTAAAAGATGAACAAGGATAGCAGCAGACTTATGAATCATAGATGAGTGTTTCTTAACAAGAACAATCTACTTAGCAATTCCCCATATTATCGGTGTTGGATGTGAGGTCAGTAAAAATATTATAGAGTTGATTTAAGGTCATAATTAAGGGCCTTTCGGTGATGGTTCAGTTCTTAAGATCTAGGTTTTGTTTGGACTCTCCAAAAATGTTGTCACACCTGTGTCAGATCCGACACACACTCGATGACATGTTTGAAGAGGTCTGTACAACATAGCTTAAGATAACATCCAAATTTTGCATGACAATTGAAAATGTACCTTAGTTTTGCTTTCAGGAGTTCATATGATGACCTGGTTATCCATATCATTTAGAAGTATGATGTTTGCTATCACGTTTTCTCTTTACGACTTAATGCAGCTTAAACCTTTTAATACGAACATATCATGTTTAAAGTCCCTTGTCCAAACAACAAGAAGTACATGTTATATCATTTGATCAAGAAAAACGTAAAGCAGAATGCATCTTCTACTTTTTGTAGGACATTGCTACTATATATTATGTGCTACTATTATCTTCCTTTAGGCAATAGGTAATATTTCTTATGCTTCACCTATCTTTTTATGCGCACTTCCCTAATCATCAAAATTTTTCTAGTTAGCATTTTTTAACCCAATCTCTCTCATTTTTTTTTCTAATTATGACTAATTTGTTTGTTAGTTCATCATCATGTGCGCTTCTCTTTTTATTTGATCATCTCTTCAAATTCTTTTATTTAGGATTTTGAAGTAACTTTTACGATTTCTATTTCAGCAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCTGTAAGTGCCTCTTATGAATTTAATGATTTTAACATCATCATGTGGAGGATGTTAATTCTAGAGGGTTCTTATGGTGCTTTTTCTTATTTGGTACGAGTTTGTTCTCTAATTAAGATTTGTTAATGTAAAGCTGAACATCAACAAATTAATTGCATTTCAGAGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAGGTAGATTCTTTTCTGCAATCAATCACTCTGTTATGCATTTTCCAAATATGAATTTTGTTATAGATGATACCTGTTATTTTTCCTCTGCAGTTTTGCTTATTATGTTTTGAAATACATTTTATCGAATTTACTTGAGTCAATTGGATGCTTCTAATGAGCTTGAATTCTTCCAGAGTATTTTCCTATATTTTCACTCATAAAGATATATAAATGACTTATGTTTCAAAAATATTCAAAACTGGATTTCTTCAGGGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCGGTAAATAACTTTACGACATACTTGTGGATAATTCCTGTGATAGGTTCTTTTTTTTTAATATAATACCACGAGTGGCGACATGAAGTAGATAATGACTTGTAACTATGTTTGGTTACAGTGTCAATGATATTCTGCTCTTGTGATGTCAAAGCTGAAACTTGTTACACTAACTTACTCCCAAATCTGTAGTCAAACACCTAATTTTTTCCCTGTCCAGTGTTATCAACTTGGTTGCAAAAGGGTTGTTAGTGCATACTTTGAAATCCACTTGTTATAGTTCTTCTTCTTGCAGTTGTATTGGGGAAACCCTGTAAAACCTTGTTATTTAACTAAATTACAATCTCAACATCTCAAAAGTTAAATATAATTGGCTTATCACGTGCATGAAGTGCTCCCCAGACCCCATGTCTGTTCTTATTTCCTGAAGATTTCTCTACTGATGAAAACGTTTGATGTTGTTCCTAGATCAACTTGTCATTTCTAGGAAATTAATCAAAATATATGTTTTACCATGGTATATTATCAGGTCTACTTACTCTGATCAAAAAGAAAATTATAAAATATACTTAGATACTTAAGTTGGCCTTTGCGAGTTGCAACTGCTCTGATTAGACAGCATCAGTAGATATCACTGGTCATCCTGTCTTCTATTACAGTTGAGTAGTTGATAGTTTCCGTGTAATAAAAGAGCAAGTAAAGGTTCAATGACTTTTCATTTTTCAGTTAGCTGAAAAAGGTGGTTCCTACCAGGACCGGATTTGAGCTTAAGTTGTACAATTAGATGAAAAGTTCACAAATGTTTCTTGTTTTGAATGGCAGATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCATGTAAGTTTAATTCCTGAATCCGTTCTTTTCATGTTATGCTTCTTTCCTTTTTGGTGCTAAAAGCATTGCATTCATTACATTCATTACCAATACTATATTCATTTCTCATAATCTGTCAAGTTGATGTAGTTTGTGTATCAGCAGGCTCGGCTCAACAAGAGTGTGAGGCCTAAGCCAAATTTCACAAAGAAGCCCTAAAAAAAATTAGCTTTTAAATTTTAATGTCAAATCATATTTTCTAGTTGACATTTAAATTGAATAAATTCTTATAATAACTAAAACAAGAATATATATCTAAAAGTACTTAGTTGATTTATTAATCTAAATCTGACCTGTTGGGTCTATTTGGCCCCCAAAAAAGAGTATATATTTATGAAGGAAAAATATCAGCAATGACAATTTTAGTGAAAAAATATAATATAAAATTAGAACAATAAAACTTGACTTTTAAGTTGATAAAATGATATAGAATTAATGTTGTGTTGCTATGATATAATGATTGGCTGTTGCAATGCTTGAACTTTTTGCAGAATGCAAAAGGTTTGGTTTGACTGTATAATATTGGAAAAAGGGTCAAAAATACCCTTGAACTATCAAAAATAGCTCATATATACCCTTGAAGTATATTTCGGCTCAAATATATCCTTACCGTCTAACTATAGGGTCAAAAGTACCTTTTTCATTAACATAATCGGTTAAACGCCACTTAGATGCCATGTGGATGTCACATGGCATGCCACATAAGCCAATAGTGTTTCACTCATGCCACGTAGACTAATAAACTTACCCCTAATTTCCCCAATTTTCTCCATTTTTCGTAGAATTTAGAAATGATTTCACTGAAGAACATAAAACTCTTTTCCTCATTTCTCCATTTCCTTGGAACGATTTCACAAAATACGTAAGTTCTAAGGGAAAGGGTTATCTATGTTCTTCAGTGAAATCGTTTCTAAGTTCTAAGGGAAATAGAGAAAATTGAGGGAAATTAGGGGTAAGTTTATTTTCTACGTGGCATGAGTGGAATTCTATCGGCTTATGTGGCATGCCATGTGGTATCCACATCGCATCCAAGTGGCGTGTAACATATCCTGTTAATGAGAAGGGTATTTTTGACCCTATAATTTGAGGGGAAGGGTATATTTGAGCCGAAATATAGTTCAAGGGTATACTTGAGCTATTTCGAATAGTTCAAGGATATTTATTACCCTTCTTCGTGTAATATTTAATGATAAGAGAATAAGCATAGTGGAAGGAAAAATGAAAAAAGTAAATATAGGGAAAATGTGGTCCATGATGTTGTTATTGGATATGAATGAGGTAACAAAAAAAGTACCTACATAAAAAAAACTACCATTACTTAAAAGTTATTTAATTTCCCAAGCAACTATCCCCACATTAAAGTAAAACAATATTTTACTTTCTACCCAAAAATTTCTCTTCAAATCCAACAATACATGGGATTTTCTTCAAAGATAAAATATATAGAACACATCCTTAGGAAAAAGTGCATCCCCGAAAAAGTTGGGGCCCCGAGCCATTGCTTTAGTGGCTCTATAGTAGAGCCGGTTCTGTGGAATTTAGATGATGAGAATGAGCTGTCATGTGCAAACATCTGCATGAAGGAATATGGAACAAGTATTGCACAACCAACCATAATAATTGAGGGTAGAAATGTTTCACCAAGCTAATCGTTTTGAAAGCTATGAATTCGTACTGCTTGTTATCCCTTGATTTTGAATATTGTAGGTTATAACTACCTGAAAATGGTAGACTGTAACACGGTTTCTGAATGAACAAATGTAACTTTCAAGTTCTATGCTCTCTTTTATCGAATACACGTGCTAGCACCCATGTCCTTTTTTCTCTGTGTCATTGTCTGAGTTCTTGGCTGTCTGTGTTTGAGATGGATATTTATTATTAGAGCTGCAAGTAACACAGACAGGATAGGAATAATAAGGTTAAAAGGATGTTGTTTATTACAAAGATATGTAGGGTTGGGATTTGGCAGGGCGAGATGTTAGTTGGTCATTAGATCTTTGAGTTACGGTGTTTGTACAACTTAATGACCGGGTGGGTGGGGAGATGGTGAGGGGGAAGATTTAATTGCATGGAATTCATTGTCAAAGCCTACTGATCAGAGTTGAATGCAGATGTTAAGATGTCAGTCTACTATACAAAGTGTTCTCTTTCATTTGTCTTGATACTCACTAAGTTGTTGGTAGGCTAATAATGATTCTACTCGGAAAAAAGCTGAGAAAATGCATCAATTAATCTTTTGCTCCATATATTACTTCTGGGTTTTAGTTATCGCTTCTATACAGCTCTAGCAATCGACTATAAGTCTCTTCCTTCCTTTTTCAGGTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATACAAGTTGGTTTCTAATTTAAGTTTCTTTTTTTTTTT</genome_strand>
        <mrna_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT................................................................................................................................................................AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCCTGCTTGTATTTTATNCTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATACAAGTTGGTTTCTAATTTAAGTTTTCTTTTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E355206" ref_strand="+" ref_description="SGN-E355206 [cTOS-18-L22]">
      <seq>tttggtttgtggaaatggcggtgaattcgagccaagagcaaagccaagattccctgaattttgttaaattacctgacgaaggaaccaaaggtcctctttgtgaatcacatttggatatgttgaacctgaagactcaaatttcaatggatgccctatcaaatggtggaaaccatgccaacctgaaaaatgatagcttagatgcttatggctcatattgtttggccatagatattgacaaaagaaagtttgacgcacctaaatccactgaggaaatgaatgggaatgttaagatggatgactatgtatctagtatgtttcagagagaaatttcatcactgatgggaggaaagttcatgcaacagatgatgaataacagctttgagttgcccaaatttgcatgtaaagataaatttttgaccgagaaggtatatgatacacctagcaacagattgagaaaatacaagcgctctgcatctttcaattcaagaagagttgttctccttttctcagtcatgtcgtgcatggggacgatcgttctcatttatcttactctaagagttagaatgagtggtgattgggctgctaatgtttagaatctacttctcgtccatcgtttgtgaaatgagttctctttcttgcttgtnatttatcctaatgtttcatgagtaggaatcgttcttcatctgtacataaagatagcagttagtataccagttgggtttctaattttaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="33643" stop="26538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33343" g_stop="33306" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33305" i_stop="31240" i_length="2066">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31239" g_stop="30970" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="308" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30809" g_stop="30713" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="405" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29523" g_stop="29415" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="514" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27053" g_stop="26855" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="713" r_length="199" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E355206" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33343" e_stop="33306"/>
          <exon e_start="31239" e_stop="30970"/>
          <exon e_start="30809" e_stop="30713"/>
          <exon e_start="29523" e_stop="29415"/>
          <exon e_start="27053" e_stop="26855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAGGTGAGGTTTGTTGCCTTATTGGAATCAATTGAGTTTTCTTAAATAGTACGCTATGTGCTTTTTTGAATCAATTTGAGCTTTTATTGCAGTTTTTGTTCAGTTCAATAGCTGCATTGTGCTGTTCCTGTTGTTTTTTTGGCTCAGATTTTGGTTATTGTTGGAGTTTTGATGTAATTTTTATCGGTTTGAAATGTGTTATCTCAGTCTATATGCTATGAGTGAATAACTGTTATTTCTGTAGAAATTATGGAGGTATGAGTGAGAACGGTTGTTATATTTGAGTTAATTGTGTTTTTTTGTGGTATTATTAATTTGTTGTAAGGAATTTTGATTTCTCTTTGCAAAAGCCTAAGTTCATTGCCGTCATTGAATCTACTGTTTGTGCAGTGAGTTAAATGCTTATATCTGTCATTTCTGTACAACTTATGAAGATAAGTGTTTTTGGAAGTTGTACAAATAGTAATGTGACAGTTCGATCTAATTGAGATGTTTTATTTTAGGCTTTTCTTTTTATTTTGTGTAGATTAAGCTGTATATCGATGTGTTCATTGTTTCCTGATATGGATACGATATTTTTTCTGTTGTAATTTCGCTGTAATTTATTTGATTCAATTTGTTTAGACTGGTTCACTTCAATGTGTTTTATGAATCTTAACTTCTATGTGTACCTAGTGCCAAAATGTTCTTCATGGTCATTGTGGTTGCAAATTTTATTTGTTTCTAGTTATTGAGATACAATTGGAGATATTACAGCTTATAAATGGAGTAAGTGTTGGTGTTTAACTCATATATGTTGTACCATTGTATTTTAGAGTAGATGTTCTTTTAAAGGAACCTTTATTTCCAGTCAGAAAGTGATACTGTGTTGCTTTTACTTCTCTTGTTTCATTAGCAAAGTGATGGTCAAAAGTTGAGGCCAGTTACTATTCTCTAGACTACATTGAACATCAAAAACACTTTGGATTCTATATGAGATTATTCAGCTCTAGGTGTGGATGTTCTTCTTGCACCAATTGAGTTTTGAAAAAGTTCAAATTCTTGGTCACTGTCTCTTAGATATTCTTAATTTTATATTCTATCACTATTTAATGCAAACTGGCGATTAAGCTTAAATGCAAGTCCTACGTTCTGATGCTTTTGTCATTGCTGAACCAATTATTTGATTGGCAAATACTTTGATGTGGTGTGGAAGATTTTATTTGTTTTGTATCTTGTGCCTTATAAGAGAGTGTTCTTGGAGTTTGGATTTTCATTCTAAAAGATGAACAAGGATAGCAGCAGACTTATGAATCATAGATGAGTGTTTCTTAACAAGAACAATCTACTTAGCAATTCCCCATATTATCGGTGTTGGATGTGAGGTCAGTAAAAATATTATAGAGTTGATTTAAGGTCATAATTAAGGGCCTTTCGGTGATGGTTCAGTTCTTAAGATCTAGGTTTTGTTTGGACTCTCCAAAAATGTTGTCACACCTGTGTCAGATCCGACACACACTCGATGACATGTTTGAAGAGGTCTGTACAACATAGCTTAAGATAACATCCAAATTTTGCATGACAATTGAAAATGTACCTTAGTTTTGCTTTCAGGAGTTCATATGATGACCTGGTTATCCATATCATTTAGAAGTATGATGTTTGCTATCACGTTTTCTCTTTACGACTTAATGCAGCTTAAACCTTTTAATACGAACATATCATGTTTAAAGTCCCTTGTCCAAACAACAAGAAGTACATGTTATATCATTTGATCAAGAAAAACGTAAAGCAGAATGCATCTTCTACTTTTTGTAGGACATTGCTACTATATATTATGTGCTACTATTATCTTCCTTTAGGCAATAGGTAATATTTCTTATGCTTCACCTATCTTTTTATGCGCACTTCCCTAATCATCAAAATTTTTCTAGTTAGCATTTTTTAACCCAATCTCTCTCATTTTTTTTTCTAATTATGACTAATTTGTTTGTTAGTTCATCATCATGTGCGCTTCTCTTTTTATTTGATCATCTCTTCAAATTCTTTTATTTAGGATTTTGAAGTAACTTTTACGATTTCTATTTCAGCAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCTGTAAGTGCCTCTTATGAATTTAATGATTTTAACATCATCATGTGGAGGATGTTAATTCTAGAGGGTTCTTATGGTGCTTTTTCTTATTTGGTACGAGTTTGTTCTCTAATTAAGATTTGTTAATGTAAAGCTGAACATCAACAAATTAATTGCATTTCAGAGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAGGTAGATTCTTTTCTGCAATCAATCACTCTGTTATGCATTTTCCAAATATGAATTTTGTTATAGATGATACCTGTTATTTTTCCTCTGCAGTTTTGCTTATTATGTTTTGAAATACATTTTATCGAATTTACTTGAGTCAATTGGATGCTTCTAATGAGCTTGAATTCTTCCAGAGTATTTTCCTATATTTTCACTCATAAAGATATATAAATGACTTATGTTTCAAAAATATTCAAAACTGGATTTCTTCAGGGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCGGTAAATAACTTTACGACATACTTGTGGATAATTCCTGTGATAGGTTCTTTTTTTTTAATATAATACCACGAGTGGCGACATGAAGTAGATAATGACTTGTAACTATGTTTGGTTACAGTGTCAATGATATTCTGCTCTTGTGATGTCAAAGCTGAAACTTGTTACACTAACTTACTCCCAAATCTGTAGTCAAACACCTAATTTTTTCCCTGTCCAGTGTTATCAACTTGGTTGCAAAAGGGTTGTTAGTGCATACTTTGAAATCCACTTGTTATAGTTCTTCTTCTTGCAGTTGTATTGGGGAAACCCTGTAAAACCTTGTTATTTAACTAAATTACAATCTCAACATCTCAAAAGTTAAATATAATTGGCTTATCACGTGCATGAAGTGCTCCCCAGACCCCATGTCTGTTCTTATTTCCTGAAGATTTCTCTACTGATGAAAACGTTTGATGTTGTTCCTAGATCAACTTGTCATTTCTAGGAAATTAATCAAAATATATGTTTTACCATGGTATATTATCAGGTCTACTTACTCTGATCAAAAAGAAAATTATAAAATATACTTAGATACTTAAGTTGGCCTTTGCGAGTTGCAACTGCTCTGATTAGACAGCATCAGTAGATATCACTGGTCATCCTGTCTTCTATTACAGTTGAGTAGTTGATAGTTTCCGTGTAATAAAAGAGCAAGTAAAGGTTCAATGACTTTTCATTTTTCAGTTAGCTGAAAAAGGTGGTTCCTACCAGGACCGGATTTGAGCTTAAGTTGTACAATTAGATGAAAAGTTCACAAATGTTTCTTGTTTTGAATGGCAGATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCATGTAAGTTTAATTCCTGAATCCGTTCTTTTCATGTTATGCTTCTTTCCTTTTTGGTGCTAAAAGCATTGCATTCATTACATTCATTACCAATACTATATTCATTTCTCATAATCTGTCAAGTTGATGTAGTTTGTGTATCAGCAGGCTCGGCTCAACAAGAGTGTGAGGCCTAAGCCAAATTTCACAAAGAAGCCCTAAAAAAAATTAGCTTTTAAATTTTAATGTCAAATCATATTTTCTAGTTGACATTTAAATTGAATAAATTCTTATAATAACTAAAACAAGAATATATATCTAAAAGTACTTAGTTGATTTATTAATCTAAATCTGACCTGTTGGGTCTATTTGGCCCCCAAAAAAGAGTATATATTTATGAAGGAAAAATATCAGCAATGACAATTTTAGTGAAAAAATATAATATAAAATTAGAACAATAAAACTTGACTTTTAAGTTGATAAAATGATATAGAATTAATGTTGTGTTGCTATGATATAATGATTGGCTGTTGCAATGCTTGAACTTTTTGCAGAATGCAAAAGGTTTGGTTTGACTGTATAATATTGGAAAAAGGGTCAAAAATACCCTTGAACTATCAAAAATAGCTCATATATACCCTTGAAGTATATTTCGGCTCAAATATATCCTTACCGTCTAACTATAGGGTCAAAAGTACCTTTTTCATTAACATAATCGGTTAAACGCCACTTAGATGCCATGTGGATGTCACATGGCATGCCACATAAGCCAATAGTGTTTCACTCATGCCACGTAGACTAATAAACTTACCCCTAATTTCCCCAATTTTCTCCATTTTTCGTAGAATTTAGAAATGATTTCACTGAAGAACATAAAACTCTTTTCCTCATTTCTCCATTTCCTTGGAACGATTTCACAAAATACGTAAGTTCTAAGGGAAAGGGTTATCTATGTTCTTCAGTGAAATCGTTTCTAAGTTCTAAGGGAAATAGAGAAAATTGAGGGAAATTAGGGGTAAGTTTATTTTCTACGTGGCATGAGTGGAATTCTATCGGCTTATGTGGCATGCCATGTGGTATCCACATCGCATCCAAGTGGCGTGTAACATATCCTGTTAATGAGAAGGGTATTTTTGACCCTATAATTTGAGGGGAAGGGTATATTTGAGCCGAAATATAGTTCAAGGGTATACTTGAGCTATTTCGAATAGTTCAAGGATATTTATTACCCTTCTTCGTGTAATATTTAATGATAAGAGAATAAGCATAGTGGAAGGAAAAATGAAAAAAGTAAATATAGGGAAAATGTGGTCCATGATGTTGTTATTGGATATGAATGAGGTAACAAAAAAAGTACCTACATAAAAAAAACTACCATTACTTAAAAGTTATTTAATTTCCCAAGCAACTATCCCCACATTAAAGTAAAACAATATTTTACTTTCTACCCAAAAATTTCTCTTCAAATCCAACAATACATGGGATTTTCTTCAAAGATAAAATATATAGAACACATCCTTAGGAAAAAGTGCATCCCCGAAAAAGTTGGGGCCCCGAGCCATTGCTTTAGTGGCTCTATAGTAGAGCCGGTTCTGTGGAATTTAGATGATGAGAATGAGCTGTCATGTGCAAACATCTGCATGAAGGAATATGGAACAAGTATTGCACAACCAACCATAATAATTGAGGGTAGAAATGTTTCACCAAGCTAATCGTTTTGAAAGCTATGAATTCGTACTGCTTGTTATCCCTTGATTTTGAATATTGTAGGTTATAACTACCTGAAAATGGTAGACTGTAACACGGTTTCTGAATGAACAAATGTAACTTTCAAGTTCTATGCTCTCTTTTATCGAATACACGTGCTAGCACCCATGTCCTTTTTTCTCTGTGTCATTGTCTGAGTTCTTGGCTGTCTGTGTTTGAGATGGATATTTATTATTAGAGCTGCAAGTAACACAGACAGGATAGGAATAATAAGGTTAAAAGGATGTTGTTTATTACAAAGATATGTAGGGTTGGGATTTGGCAGGGCGAGATGTTAGTTGGTCATTAGATCTTTGAGTTACGGTGTTTGTACAACTTAATGACCGGGTGGGTGGGGAGATGGTGAGGGGGAAGATTTAATTGCATGGAATTCATTGTCAAAGCCTACTGATCAGAGTTGAATGCAGATGTTAAGATGTCAGTCTACTATACAAAGTGTTCTCTTTCATTTGTCTTGATACTCACTAAGTTGTTGGTAGGCTAATAATGATTCTACTCGGAAAAAAGCTGAGAAAATGCATCAATTAATCTTTTGCTCCATATATTACTTCTGGGTTTTAGTTATCGCTTCTATACAGCTCTAGCAATCGACTATAAGTCTCTTCCTTCCTTTTTCAGGTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATACAA</genome_strand>
        <mrna_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT................................................................................................................................................................AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTNATTTATCCTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E554997" ref_strand="+" ref_description="SGN-E554997 [cTSC-6-B2]">
      <seq>catagatattgacaaaagaaagtttgacgcacctaaatccactgaggaaatgaatgggaatgttaagatggatgactatgtatctagtatgtttcagagagaaatttcatcactgatgggaggaaagttcatgcaacagatgatgaataacagctttgagttgcccaaatttgcatgtaaagataaatttttgaccgagaaggtatatgatacacctagcaacagattgagaaaatacaagcgctctgcatctttcaattcaagaagagttgttctccttttctcagtcatgtcgtgcatggggacgatcgttctcatttatcttactctaagagttagaatgagtggtgattgggctgctaatgtttagaatctacttctcgtccatcgtttgtgaaatgagttctctttcttgcttgtattttatcttaatgtttcatgagtaggaatcgttcttcatctgtacataaagatagcagttagtataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatccctggggggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="31354" stop="26555"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31054" g_stop="30970" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="30809" g_stop="30713" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="182" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29523" g_stop="29415" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="291" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="27053" g_stop="26855" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="490" r_length="199" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="491" polyA_stop="527"/>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E554997" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E554997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31054" e_stop="30970"/>
          <exon e_start="30809" e_stop="30713"/>
          <exon e_start="29523" e_stop="29415"/>
          <exon e_start="27053" e_stop="26855"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCTGTAAGTGCCTCTTATGAATTTAATGATTTTAACATCATCATGTGGAGGATGTTAATTCTAGAGGGTTCTTATGGTGCTTTTTCTTATTTGGTACGAGTTTGTTCTCTAATTAAGATTTGTTAATGTAAAGCTGAACATCAACAAATTAATTGCATTTCAGAGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAGGTAGATTCTTTTCTGCAATCAATCACTCTGTTATGCATTTTCCAAATATGAATTTTGTTATAGATGATACCTGTTATTTTTCCTCTGCAGTTTTGCTTATTATGTTTTGAAATACATTTTATCGAATTTACTTGAGTCAATTGGATGCTTCTAATGAGCTTGAATTCTTCCAGAGTATTTTCCTATATTTTCACTCATAAAGATATATAAATGACTTATGTTTCAAAAATATTCAAAACTGGATTTCTTCAGGGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCGGTAAATAACTTTACGACATACTTGTGGATAATTCCTGTGATAGGTTCTTTTTTTTTAATATAATACCACGAGTGGCGACATGAAGTAGATAATGACTTGTAACTATGTTTGGTTACAGTGTCAATGATATTCTGCTCTTGTGATGTCAAAGCTGAAACTTGTTACACTAACTTACTCCCAAATCTGTAGTCAAACACCTAATTTTTTCCCTGTCCAGTGTTATCAACTTGGTTGCAAAAGGGTTGTTAGTGCATACTTTGAAATCCACTTGTTATAGTTCTTCTTCTTGCAGTTGTATTGGGGAAACCCTGTAAAACCTTGTTATTTAACTAAATTACAATCTCAACATCTCAAAAGTTAAATATAATTGGCTTATCACGTGCATGAAGTGCTCCCCAGACCCCATGTCTGTTCTTATTTCCTGAAGATTTCTCTACTGATGAAAACGTTTGATGTTGTTCCTAGATCAACTTGTCATTTCTAGGAAATTAATCAAAATATATGTTTTACCATGGTATATTATCAGGTCTACTTACTCTGATCAAAAAGAAAATTATAAAATATACTTAGATACTTAAGTTGGCCTTTGCGAGTTGCAACTGCTCTGATTAGACAGCATCAGTAGATATCACTGGTCATCCTGTCTTCTATTACAGTTGAGTAGTTGATAGTTTCCGTGTAATAAAAGAGCAAGTAAAGGTTCAATGACTTTTCATTTTTCAGTTAGCTGAAAAAGGTGGTTCCTACCAGGACCGGATTTGAGCTTAAGTTGTACAATTAGATGAAAAGTTCACAAATGTTTCTTGTTTTGAATGGCAGATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCATGTAAGTTTAATTCCTGAATCCGTTCTTTTCATGTTATGCTTCTTTCCTTTTTGGTGCTAAAAGCATTGCATTCATTACATTCATTACCAATACTATATTCATTTCTCATAATCTGTCAAGTTGATGTAGTTTGTGTATCAGCAGGCTCGGCTCAACAAGAGTGTGAGGCCTAAGCCAAATTTCACAAAGAAGCCCTAAAAAAAATTAGCTTTTAAATTTTAATGTCAAATCATATTTTCTAGTTGACATTTAAATTGAATAAATTCTTATAATAACTAAAACAAGAATATATATCTAAAAGTACTTAGTTGATTTATTAATCTAAATCTGACCTGTTGGGTCTATTTGGCCCCCAAAAAAGAGTATATATTTATGAAGGAAAAATATCAGCAATGACAATTTTAGTGAAAAAATATAATATAAAATTAGAACAATAAAACTTGACTTTTAAGTTGATAAAATGATATAGAATTAATGTTGTGTTGCTATGATATAATGATTGGCTGTTGCAATGCTTGAACTTTTTGCAGAATGCAAAAGGTTTGGTTTGACTGTATAATATTGGAAAAAGGGTCAAAAATACCCTTGAACTATCAAAAATAGCTCATATATACCCTTGAAGTATATTTCGGCTCAAATATATCCTTACCGTCTAACTATAGGGTCAAAAGTACCTTTTTCATTAACATAATCGGTTAAACGCCACTTAGATGCCATGTGGATGTCACATGGCATGCCACATAAGCCAATAGTGTTTCACTCATGCCACGTAGACTAATAAACTTACCCCTAATTTCCCCAATTTTCTCCATTTTTCGTAGAATTTAGAAATGATTTCACTGAAGAACATAAAACTCTTTTCCTCATTTCTCCATTTCCTTGGAACGATTTCACAAAATACGTAAGTTCTAAGGGAAAGGGTTATCTATGTTCTTCAGTGAAATCGTTTCTAAGTTCTAAGGGAAATAGAGAAAATTGAGGGAAATTAGGGGTAAGTTTATTTTCTACGTGGCATGAGTGGAATTCTATCGGCTTATGTGGCATGCCATGTGGTATCCACATCGCATCCAAGTGGCGTGTAACATATCCTGTTAATGAGAAGGGTATTTTTGACCCTATAATTTGAGGGGAAGGGTATATTTGAGCCGAAATATAGTTCAAGGGTATACTTGAGCTATTTCGAATAGTTCAAGGATATTTATTACCCTTCTTCGTGTAATATTTAATGATAAGAGAATAAGCATAGTGGAAGGAAAAATGAAAAAAGTAAATATAGGGAAAATGTGGTCCATGATGTTGTTATTGGATATGAATGAGGTAACAAAAAAAGTACCTACATAAAAAAAACTACCATTACTTAAAAGTTATTTAATTTCCCAAGCAACTATCCCCACATTAAAGTAAAACAATATTTTACTTTCTACCCAAAAATTTCTCTTCAAATCCAACAATACATGGGATTTTCTTCAAAGATAAAATATATAGAACACATCCTTAGGAAAAAGTGCATCCCCGAAAAAGTTGGGGCCCCGAGCCATTGCTTTAGTGGCTCTATAGTAGAGCCGGTTCTGTGGAATTTAGATGATGAGAATGAGCTGTCATGTGCAAACATCTGCATGAAGGAATATGGAACAAGTATTGCACAACCAACCATAATAATTGAGGGTAGAAATGTTTCACCAAGCTAATCGTTTTGAAAGCTATGAATTCGTACTGCTTGTTATCCCTTGATTTTGAATATTGTAGGTTATAACTACCTGAAAATGGTAGACTGTAACACGGTTTCTGAATGAACAAATGTAACTTTCAAGTTCTATGCTCTCTTTTATCGAATACACGTGCTAGCACCCATGTCCTTTTTTCTCTGTGTCATTGTCTGAGTTCTTGGCTGTCTGTGTTTGAGATGGATATTTATTATTAGAGCTGCAAGTAACACAGACAGGATAGGAATAATAAGGTTAAAAGGATGTTGTTTATTACAAAGATATGTAGGGTTGGGATTTGGCAGGGCGAGATGTTAGTTGGTCATTAGATCTTTGAGTTACGGTGTTTGTACAACTTAATGACCGGGTGGGTGGGGAGATGGTGAGGGGGAAGATTTAATTGCATGGAATTCATTGTCAAAGCCTACTGATCAGAGTTGAATGCAGATGTTAAGATGTCAGTCTACTATACAAAGTGTTCTCTTTCATTTGTCTTGATACTCACTAAGTTGTTGGTAGGCTAATAATGATTCTACTCGGAAAAAAGCTGAGAAAATGCATCAATTAATCTTTTGCTCCATATATTACTTCTGGGTTTTAGTTATCGCTTCTATACAGCTCTAGCAATCGACTATAAGTCTCTTCCTTCCTTTTTCAGGTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATACAA</genome_strand>
        <mrna_strand>CATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT................................................................................................................................................................AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E348878" ref_strand="+" ref_description="SGN-E348878 [cTOF-29-P8]">
      <seq>ttgtttggtttgtggaaatggcggtgaattcgagccaagagcaaagccaagattccctgaattttgttaaattacctgacgaaggaaccaaaggtcctctttgtgaatcacatttggatatgttgaacctgaagactcaaatttcaatggatgccctatcaaatggtggaaaccatgccaacctgaaaaatgatagcttagatgcttatggctcatattgtttggccatagatattgacaaaagaaagtttgacgcacctaaatccactgaggaaatgaatgggaatgttaagatggatgactatgtatctagtatgtttcagagagaaatttcatcactgatgggaggaaagttcatgcaacagatgatgaataacagctttgagttgcccaaatttgcatgtaaagataaatttttgaccgagaaggtatatgatacacctagcaacagattgagaaaatacaagcgctctgcatctttcaattcaagaagagttgttctccttttctcagtcatgtcgtgcatgggggacgatcgttctcatttatcttactctaagagttagaatgagtggtgattgggctgctaatgtttagaatctacttctcgtccatcgtttgtgaaatgagttctctttcttgcttggattttatcttaatgtttcatgagtaggaatcgttcttcatctgtacataaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="33646" stop="26573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33346" g_stop="33306" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33305" i_stop="31240" i_length="2066">
            <donor d_prob="0.888" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31239" g_stop="30970" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="311" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30809" g_stop="30713" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="312" r_stop="408" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29523" g_stop="29415" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="517" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27053" g_stop="26873" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="699" r_length="182" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E348878" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33346" e_stop="33306"/>
          <exon e_start="31239" e_stop="30970"/>
          <exon e_start="30809" e_stop="30713"/>
          <exon e_start="29523" e_stop="29415"/>
          <exon e_start="27053" e_stop="26873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAGGTGAGGTTTGTTGCCTTATTGGAATCAATTGAGTTTTCTTAAATAGTACGCTATGTGCTTTTTTGAATCAATTTGAGCTTTTATTGCAGTTTTTGTTCAGTTCAATAGCTGCATTGTGCTGTTCCTGTTGTTTTTTTGGCTCAGATTTTGGTTATTGTTGGAGTTTTGATGTAATTTTTATCGGTTTGAAATGTGTTATCTCAGTCTATATGCTATGAGTGAATAACTGTTATTTCTGTAGAAATTATGGAGGTATGAGTGAGAACGGTTGTTATATTTGAGTTAATTGTGTTTTTTTGTGGTATTATTAATTTGTTGTAAGGAATTTTGATTTCTCTTTGCAAAAGCCTAAGTTCATTGCCGTCATTGAATCTACTGTTTGTGCAGTGAGTTAAATGCTTATATCTGTCATTTCTGTACAACTTATGAAGATAAGTGTTTTTGGAAGTTGTACAAATAGTAATGTGACAGTTCGATCTAATTGAGATGTTTTATTTTAGGCTTTTCTTTTTATTTTGTGTAGATTAAGCTGTATATCGATGTGTTCATTGTTTCCTGATATGGATACGATATTTTTTCTGTTGTAATTTCGCTGTAATTTATTTGATTCAATTTGTTTAGACTGGTTCACTTCAATGTGTTTTATGAATCTTAACTTCTATGTGTACCTAGTGCCAAAATGTTCTTCATGGTCATTGTGGTTGCAAATTTTATTTGTTTCTAGTTATTGAGATACAATTGGAGATATTACAGCTTATAAATGGAGTAAGTGTTGGTGTTTAACTCATATATGTTGTACCATTGTATTTTAGAGTAGATGTTCTTTTAAAGGAACCTTTATTTCCAGTCAGAAAGTGATACTGTGTTGCTTTTACTTCTCTTGTTTCATTAGCAAAGTGATGGTCAAAAGTTGAGGCCAGTTACTATTCTCTAGACTACATTGAACATCAAAAACACTTTGGATTCTATATGAGATTATTCAGCTCTAGGTGTGGATGTTCTTCTTGCACCAATTGAGTTTTGAAAAAGTTCAAATTCTTGGTCACTGTCTCTTAGATATTCTTAATTTTATATTCTATCACTATTTAATGCAAACTGGCGATTAAGCTTAAATGCAAGTCCTACGTTCTGATGCTTTTGTCATTGCTGAACCAATTATTTGATTGGCAAATACTTTGATGTGGTGTGGAAGATTTTATTTGTTTTGTATCTTGTGCCTTATAAGAGAGTGTTCTTGGAGTTTGGATTTTCATTCTAAAAGATGAACAAGGATAGCAGCAGACTTATGAATCATAGATGAGTGTTTCTTAACAAGAACAATCTACTTAGCAATTCCCCATATTATCGGTGTTGGATGTGAGGTCAGTAAAAATATTATAGAGTTGATTTAAGGTCATAATTAAGGGCCTTTCGGTGATGGTTCAGTTCTTAAGATCTAGGTTTTGTTTGGACTCTCCAAAAATGTTGTCACACCTGTGTCAGATCCGACACACACTCGATGACATGTTTGAAGAGGTCTGTACAACATAGCTTAAGATAACATCCAAATTTTGCATGACAATTGAAAATGTACCTTAGTTTTGCTTTCAGGAGTTCATATGATGACCTGGTTATCCATATCATTTAGAAGTATGATGTTTGCTATCACGTTTTCTCTTTACGACTTAATGCAGCTTAAACCTTTTAATACGAACATATCATGTTTAAAGTCCCTTGTCCAAACAACAAGAAGTACATGTTATATCATTTGATCAAGAAAAACGTAAAGCAGAATGCATCTTCTACTTTTTGTAGGACATTGCTACTATATATTATGTGCTACTATTATCTTCCTTTAGGCAATAGGTAATATTTCTTATGCTTCACCTATCTTTTTATGCGCACTTCCCTAATCATCAAAATTTTTCTAGTTAGCATTTTTTAACCCAATCTCTCTCATTTTTTTTTCTAATTATGACTAATTTGTTTGTTAGTTCATCATCATGTGCGCTTCTCTTTTTATTTGATCATCTCTTCAAATTCTTTTATTTAGGATTTTGAAGTAACTTTTACGATTTCTATTTCAGCAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCTGTAAGTGCCTCTTATGAATTTAATGATTTTAACATCATCATGTGGAGGATGTTAATTCTAGAGGGTTCTTATGGTGCTTTTTCTTATTTGGTACGAGTTTGTTCTCTAATTAAGATTTGTTAATGTAAAGCTGAACATCAACAAATTAATTGCATTTCAGAGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAGGTAGATTCTTTTCTGCAATCAATCACTCTGTTATGCATTTTCCAAATATGAATTTTGTTATAGATGATACCTGTTATTTTTCCTCTGCAGTTTTGCTTATTATGTTTTGAAATACATTTTATCGAATTTACTTGAGTCAATTGGATGCTTCTAATGAGCTTGAATTCTTCCAGAGTATTTTCCTATATTTTCACTCATAAAGATATATAAATGACTTATGTTTCAAAAATATTCAAAACTGGATTTCTTCAGGGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCGGTAAATAACTTTACGACATACTTGTGGATAATTCCTGTGATAGGTTCTTTTTTTTTAATATAATACCACGAGTGGCGACATGAAGTAGATAATGACTTGTAACTATGTTTGGTTACAGTGTCAATGATATTCTGCTCTTGTGATGTCAAAGCTGAAACTTGTTACACTAACTTACTCCCAAATCTGTAGTCAAACACCTAATTTTTTCCCTGTCCAGTGTTATCAACTTGGTTGCAAAAGGGTTGTTAGTGCATACTTTGAAATCCACTTGTTATAGTTCTTCTTCTTGCAGTTGTATTGGGGAAACCCTGTAAAACCTTGTTATTTAACTAAATTACAATCTCAACATCTCAAAAGTTAAATATAATTGGCTTATCACGTGCATGAAGTGCTCCCCAGACCCCATGTCTGTTCTTATTTCCTGAAGATTTCTCTACTGATGAAAACGTTTGATGTTGTTCCTAGATCAACTTGTCATTTCTAGGAAATTAATCAAAATATATGTTTTACCATGGTATATTATCAGGTCTACTTACTCTGATCAAAAAGAAAATTATAAAATATACTTAGATACTTAAGTTGGCCTTTGCGAGTTGCAACTGCTCTGATTAGACAGCATCAGTAGATATCACTGGTCATCCTGTCTTCTATTACAGTTGAGTAGTTGATAGTTTCCGTGTAATAAAAGAGCAAGTAAAGGTTCAATGACTTTTCATTTTTCAGTTAGCTGAAAAAGGTGGTTCCTACCAGGACCGGATTTGAGCTTAAGTTGTACAATTAGATGAAAAGTTCACAAATGTTTCTTGTTTTGAATGGCAGATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCATGTAAGTTTAATTCCTGAATCCGTTCTTTTCATGTTATGCTTCTTTCCTTTTTGGTGCTAAAAGCATTGCATTCATTACATTCATTACCAATACTATATTCATTTCTCATAATCTGTCAAGTTGATGTAGTTTGTGTATCAGCAGGCTCGGCTCAACAAGAGTGTGAGGCCTAAGCCAAATTTCACAAAGAAGCCCTAAAAAAAATTAGCTTTTAAATTTTAATGTCAAATCATATTTTCTAGTTGACATTTAAATTGAATAAATTCTTATAATAACTAAAACAAGAATATATATCTAAAAGTACTTAGTTGATTTATTAATCTAAATCTGACCTGTTGGGTCTATTTGGCCCCCAAAAAAGAGTATATATTTATGAAGGAAAAATATCAGCAATGACAATTTTAGTGAAAAAATATAATATAAAATTAGAACAATAAAACTTGACTTTTAAGTTGATAAAATGATATAGAATTAATGTTGTGTTGCTATGATATAATGATTGGCTGTTGCAATGCTTGAACTTTTTGCAGAATGCAAAAGGTTTGGTTTGACTGTATAATATTGGAAAAAGGGTCAAAAATACCCTTGAACTATCAAAAATAGCTCATATATACCCTTGAAGTATATTTCGGCTCAAATATATCCTTACCGTCTAACTATAGGGTCAAAAGTACCTTTTTCATTAACATAATCGGTTAAACGCCACTTAGATGCCATGTGGATGTCACATGGCATGCCACATAAGCCAATAGTGTTTCACTCATGCCACGTAGACTAATAAACTTACCCCTAATTTCCCCAATTTTCTCCATTTTTCGTAGAATTTAGAAATGATTTCACTGAAGAACATAAAACTCTTTTCCTCATTTCTCCATTTCCTTGGAACGATTTCACAAAATACGTAAGTTCTAAGGGAAAGGGTTATCTATGTTCTTCAGTGAAATCGTTTCTAAGTTCTAAGGGAAATAGAGAAAATTGAGGGAAATTAGGGGTAAGTTTATTTTCTACGTGGCATGAGTGGAATTCTATCGGCTTATGTGGCATGCCATGTGGTATCCACATCGCATCCAAGTGGCGTGTAACATATCCTGTTAATGAGAAGGGTATTTTTGACCCTATAATTTGAGGGGAAGGGTATATTTGAGCCGAAATATAGTTCAAGGGTATACTTGAGCTATTTCGAATAGTTCAAGGATATTTATTACCCTTCTTCGTGTAATATTTAATGATAAGAGAATAAGCATAGTGGAAGGAAAAATGAAAAAAGTAAATATAGGGAAAATGTGGTCCATGATGTTGTTATTGGATATGAATGAGGTAACAAAAAAAGTACCTACATAAAAAAAACTACCATTACTTAAAAGTTATTTAATTTCCCAAGCAACTATCCCCACATTAAAGTAAAACAATATTTTACTTTCTACCCAAAAATTTCTCTTCAAATCCAACAATACATGGGATTTTCTTCAAAGATAAAATATATAGAACACATCCTTAGGAAAAAGTGCATCCCCGAAAAAGTTGGGGCCCCGAGCCATTGCTTTAGTGGCTCTATAGTAGAGCCGGTTCTGTGGAATTTAGATGATGAGAATGAGCTGTCATGTGCAAACATCTGCATGAAGGAATATGGAACAAGTATTGCACAACCAACCATAATAATTGAGGGTAGAAATGTTTCACCAAGCTAATCGTTTTGAAAGCTATGAATTCGTACTGCTTGTTATCCCTTGATTTTGAATATTGTAGGTTATAACTACCTGAAAATGGTAGACTGTAACACGGTTTCTGAATGAACAAATGTAACTTTCAAGTTCTATGCTCTCTTTTATCGAATACACGTGCTAGCACCCATGTCCTTTTTTCTCTGTGTCATTGTCTGAGTTCTTGGCTGTCTGTGTTTGAGATGGATATTTATTATTAGAGCTGCAAGTAACACAGACAGGATAGGAATAATAAGGTTAAAAGGATGTTGTTTATTACAAAGATATGTAGGGTTGGGATTTGGCAGGGCGAGATGTTAGTTGGTCATTAGATCTTTGAGTTACGGTGTTTGTACAACTTAATGACCGGGTGGGTGGGGAGATGGTGAGGGGGAAGATTTAATTGCATGGAATTCATTGTCAAAGCCTACTGATCAGAGTTGAATGCAGATGTTAAGATGTCAGTCTACTATACAAAGTGTTCTCTTTCATTTGTCTTGATACTCACTAAGTTGTTGGTAGGCTAATAATGATTCTACTCGGAAAAAAGCTGAGAAAATGCATCAATTAATCTTTTGCTCCATATATTACTTCTGGGTTTTAGTTATCGCTTCTATACAGCTCTAGCAATCGACTATAAGTCTCTTCCTTCCTTTTTCAGGTCGTGCAT-GGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAG</genome_strand>
        <mrna_strand>TTGTTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT................................................................................................................................................................AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCATGGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGGATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E354392" ref_strand="+" ref_description="SGN-E354392 [cTOS-17-E12]">
      <seq>tttggtttgtggaaatggcggtgaattcgagccaagagcaaagccaagattccctgaattttgttaaattacctgacgaaggaaccaaaggtcctctttgtgaatcacatttggatatgttgaacctgaagactcaaatttcaatggatgccctatcaaatggtggaaaccatgccaacctgaaaaatgatagcttagatgcttatggctcatattgtttggccatagatattgacaaaagaaagtttgacgcacctaaatccactgaggaaatgaatgggaatgttaagatggatgactatgtatctagtatgtttcagagagaaatttcatcactgatgggaggaaagttcatgcaacagatgatgaataacagctttgagttgcccaaatttgcatgtaaagataaatttttgaccgagaaggtatatgatacacctagcaacagattgagaaaatacaagcgctctgcatctttcaattcaagaagagttgttctccttttctcagtcatgtcgtgcatggggacgatcgttctcatttatcttactctaagagttagaatgagtggtgattgggctgctaatgtttagaatctacttctcgtccatcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="33643" stop="26652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33343" g_stop="33306" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33305" i_stop="31240" i_length="2066">
            <donor d_prob="0.888" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31239" g_stop="30970" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="308" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30809" g_stop="30713" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="405" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29523" g_stop="29415" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="514" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.922" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="27053" g_stop="26952" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="616" r_length="102" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E354392" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354392" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33343" e_stop="33306"/>
          <exon e_start="31239" e_stop="30970"/>
          <exon e_start="30809" e_stop="30713"/>
          <exon e_start="29523" e_stop="29415"/>
          <exon e_start="27053" e_stop="26952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAGGTGAGGTTTGTTGCCTTATTGGAATCAATTGAGTTTTCTTAAATAGTACGCTATGTGCTTTTTTGAATCAATTTGAGCTTTTATTGCAGTTTTTGTTCAGTTCAATAGCTGCATTGTGCTGTTCCTGTTGTTTTTTTGGCTCAGATTTTGGTTATTGTTGGAGTTTTGATGTAATTTTTATCGGTTTGAAATGTGTTATCTCAGTCTATATGCTATGAGTGAATAACTGTTATTTCTGTAGAAATTATGGAGGTATGAGTGAGAACGGTTGTTATATTTGAGTTAATTGTGTTTTTTTGTGGTATTATTAATTTGTTGTAAGGAATTTTGATTTCTCTTTGCAAAAGCCTAAGTTCATTGCCGTCATTGAATCTACTGTTTGTGCAGTGAGTTAAATGCTTATATCTGTCATTTCTGTACAACTTATGAAGATAAGTGTTTTTGGAAGTTGTACAAATAGTAATGTGACAGTTCGATCTAATTGAGATGTTTTATTTTAGGCTTTTCTTTTTATTTTGTGTAGATTAAGCTGTATATCGATGTGTTCATTGTTTCCTGATATGGATACGATATTTTTTCTGTTGTAATTTCGCTGTAATTTATTTGATTCAATTTGTTTAGACTGGTTCACTTCAATGTGTTTTATGAATCTTAACTTCTATGTGTACCTAGTGCCAAAATGTTCTTCATGGTCATTGTGGTTGCAAATTTTATTTGTTTCTAGTTATTGAGATACAATTGGAGATATTACAGCTTATAAATGGAGTAAGTGTTGGTGTTTAACTCATATATGTTGTACCATTGTATTTTAGAGTAGATGTTCTTTTAAAGGAACCTTTATTTCCAGTCAGAAAGTGATACTGTGTTGCTTTTACTTCTCTTGTTTCATTAGCAAAGTGATGGTCAAAAGTTGAGGCCAGTTACTATTCTCTAGACTACATTGAACATCAAAAACACTTTGGATTCTATATGAGATTATTCAGCTCTAGGTGTGGATGTTCTTCTTGCACCAATTGAGTTTTGAAAAAGTTCAAATTCTTGGTCACTGTCTCTTAGATATTCTTAATTTTATATTCTATCACTATTTAATGCAAACTGGCGATTAAGCTTAAATGCAAGTCCTACGTTCTGATGCTTTTGTCATTGCTGAACCAATTATTTGATTGGCAAATACTTTGATGTGGTGTGGAAGATTTTATTTGTTTTGTATCTTGTGCCTTATAAGAGAGTGTTCTTGGAGTTTGGATTTTCATTCTAAAAGATGAACAAGGATAGCAGCAGACTTATGAATCATAGATGAGTGTTTCTTAACAAGAACAATCTACTTAGCAATTCCCCATATTATCGGTGTTGGATGTGAGGTCAGTAAAAATATTATAGAGTTGATTTAAGGTCATAATTAAGGGCCTTTCGGTGATGGTTCAGTTCTTAAGATCTAGGTTTTGTTTGGACTCTCCAAAAATGTTGTCACACCTGTGTCAGATCCGACACACACTCGATGACATGTTTGAAGAGGTCTGTACAACATAGCTTAAGATAACATCCAAATTTTGCATGACAATTGAAAATGTACCTTAGTTTTGCTTTCAGGAGTTCATATGATGACCTGGTTATCCATATCATTTAGAAGTATGATGTTTGCTATCACGTTTTCTCTTTACGACTTAATGCAGCTTAAACCTTTTAATACGAACATATCATGTTTAAAGTCCCTTGTCCAAACAACAAGAAGTACATGTTATATCATTTGATCAAGAAAAACGTAAAGCAGAATGCATCTTCTACTTTTTGTAGGACATTGCTACTATATATTATGTGCTACTATTATCTTCCTTTAGGCAATAGGTAATATTTCTTATGCTTCACCTATCTTTTTATGCGCACTTCCCTAATCATCAAAATTTTTCTAGTTAGCATTTTTTAACCCAATCTCTCTCATTTTTTTTTCTAATTATGACTAATTTGTTTGTTAGTTCATCATCATGTGCGCTTCTCTTTTTATTTGATCATCTCTTCAAATTCTTTTATTTAGGATTTTGAAGTAACTTTTACGATTTCTATTTCAGCAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCTGTAAGTGCCTCTTATGAATTTAATGATTTTAACATCATCATGTGGAGGATGTTAATTCTAGAGGGTTCTTATGGTGCTTTTTCTTATTTGGTACGAGTTTGTTCTCTAATTAAGATTTGTTAATGTAAAGCTGAACATCAACAAATTAATTGCATTTCAGAGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAGGTAGATTCTTTTCTGCAATCAATCACTCTGTTATGCATTTTCCAAATATGAATTTTGTTATAGATGATACCTGTTATTTTTCCTCTGCAGTTTTGCTTATTATGTTTTGAAATACATTTTATCGAATTTACTTGAGTCAATTGGATGCTTCTAATGAGCTTGAATTCTTCCAGAGTATTTTCCTATATTTTCACTCATAAAGATATATAAATGACTTATGTTTCAAAAATATTCAAAACTGGATTTCTTCAGGGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCGGTAAATAACTTTACGACATACTTGTGGATAATTCCTGTGATAGGTTCTTTTTTTTTAATATAATACCACGAGTGGCGACATGAAGTAGATAATGACTTGTAACTATGTTTGGTTACAGTGTCAATGATATTCTGCTCTTGTGATGTCAAAGCTGAAACTTGTTACACTAACTTACTCCCAAATCTGTAGTCAAACACCTAATTTTTTCCCTGTCCAGTGTTATCAACTTGGTTGCAAAAGGGTTGTTAGTGCATACTTTGAAATCCACTTGTTATAGTTCTTCTTCTTGCAGTTGTATTGGGGAAACCCTGTAAAACCTTGTTATTTAACTAAATTACAATCTCAACATCTCAAAAGTTAAATATAATTGGCTTATCACGTGCATGAAGTGCTCCCCAGACCCCATGTCTGTTCTTATTTCCTGAAGATTTCTCTACTGATGAAAACGTTTGATGTTGTTCCTAGATCAACTTGTCATTTCTAGGAAATTAATCAAAATATATGTTTTACCATGGTATATTATCAGGTCTACTTACTCTGATCAAAAAGAAAATTATAAAATATACTTAGATACTTAAGTTGGCCTTTGCGAGTTGCAACTGCTCTGATTAGACAGCATCAGTAGATATCACTGGTCATCCTGTCTTCTATTACAGTTGAGTAGTTGATAGTTTCCGTGTAATAAAAGAGCAAGTAAAGGTTCAATGACTTTTCATTTTTCAGTTAGCTGAAAAAGGTGGTTCCTACCAGGACCGGATTTGAGCTTAAGTTGTACAATTAGATGAAAAGTTCACAAATGTTTCTTGTTTTGAATGGCAGATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCATGTAAGTTTAATTCCTGAATCCGTTCTTTTCATGTTATGCTTCTTTCCTTTTTGGTGCTAAAAGCATTGCATTCATTACATTCATTACCAATACTATATTCATTTCTCATAATCTGTCAAGTTGATGTAGTTTGTGTATCAGCAGGCTCGGCTCAACAAGAGTGTGAGGCCTAAGCCAAATTTCACAAAGAAGCCCTAAAAAAAATTAGCTTTTAAATTTTAATGTCAAATCATATTTTCTAGTTGACATTTAAATTGAATAAATTCTTATAATAACTAAAACAAGAATATATATCTAAAAGTACTTAGTTGATTTATTAATCTAAATCTGACCTGTTGGGTCTATTTGGCCCCCAAAAAAGAGTATATATTTATGAAGGAAAAATATCAGCAATGACAATTTTAGTGAAAAAATATAATATAAAATTAGAACAATAAAACTTGACTTTTAAGTTGATAAAATGATATAGAATTAATGTTGTGTTGCTATGATATAATGATTGGCTGTTGCAATGCTTGAACTTTTTGCAGAATGCAAAAGGTTTGGTTTGACTGTATAATATTGGAAAAAGGGTCAAAAATACCCTTGAACTATCAAAAATAGCTCATATATACCCTTGAAGTATATTTCGGCTCAAATATATCCTTACCGTCTAACTATAGGGTCAAAAGTACCTTTTTCATTAACATAATCGGTTAAACGCCACTTAGATGCCATGTGGATGTCACATGGCATGCCACATAAGCCAATAGTGTTTCACTCATGCCACGTAGACTAATAAACTTACCCCTAATTTCCCCAATTTTCTCCATTTTTCGTAGAATTTAGAAATGATTTCACTGAAGAACATAAAACTCTTTTCCTCATTTCTCCATTTCCTTGGAACGATTTCACAAAATACGTAAGTTCTAAGGGAAAGGGTTATCTATGTTCTTCAGTGAAATCGTTTCTAAGTTCTAAGGGAAATAGAGAAAATTGAGGGAAATTAGGGGTAAGTTTATTTTCTACGTGGCATGAGTGGAATTCTATCGGCTTATGTGGCATGCCATGTGGTATCCACATCGCATCCAAGTGGCGTGTAACATATCCTGTTAATGAGAAGGGTATTTTTGACCCTATAATTTGAGGGGAAGGGTATATTTGAGCCGAAATATAGTTCAAGGGTATACTTGAGCTATTTCGAATAGTTCAAGGATATTTATTACCCTTCTTCGTGTAATATTTAATGATAAGAGAATAAGCATAGTGGAAGGAAAAATGAAAAAAGTAAATATAGGGAAAATGTGGTCCATGATGTTGTTATTGGATATGAATGAGGTAACAAAAAAAGTACCTACATAAAAAAAACTACCATTACTTAAAAGTTATTTAATTTCCCAAGCAACTATCCCCACATTAAAGTAAAACAATATTTTACTTTCTACCCAAAAATTTCTCTTCAAATCCAACAATACATGGGATTTTCTTCAAAGATAAAATATATAGAACACATCCTTAGGAAAAAGTGCATCCCCGAAAAAGTTGGGGCCCCGAGCCATTGCTTTAGTGGCTCTATAGTAGAGCCGGTTCTGTGGAATTTAGATGATGAGAATGAGCTGTCATGTGCAAACATCTGCATGAAGGAATATGGAACAAGTATTGCACAACCAACCATAATAATTGAGGGTAGAAATGTTTCACCAAGCTAATCGTTTTGAAAGCTATGAATTCGTACTGCTTGTTATCCCTTGATTTTGAATATTGTAGGTTATAACTACCTGAAAATGGTAGACTGTAACACGGTTTCTGAATGAACAAATGTAACTTTCAAGTTCTATGCTCTCTTTTATCGAATACACGTGCTAGCACCCATGTCCTTTTTTCTCTGTGTCATTGTCTGAGTTCTTGGCTGTCTGTGTTTGAGATGGATATTTATTATTAGAGCTGCAAGTAACACAGACAGGATAGGAATAATAAGGTTAAAAGGATGTTGTTTATTACAAAGATATGTAGGGTTGGGATTTGGCAGGGCGAGATGTTAGTTGGTCATTAGATCTTTGAGTTACGGTGTTTGTACAACTTAATGACCGGGTGGGTGGGGAGATGGTGAGGGGGAAGATTTAATTGCATGGAATTCATTGTCAAAGCCTACTGATCAGAGTTGAATGCAGATGTTAAGATGTCAGTCTACTATACAAAGTGTTCTCTTTCATTTGTCTTGATACTCACTAAGTTGTTGGTAGGCTAATAATGATTCTACTCGGAAAAAAGCTGAGAAAATGCATCAATTAATCTTTTGCTCCATATATTACTTCTGGGTTTTAGTTATCGCTTCTATACAGCTCTAGCAATCGACTATAAGTCTCTTCCTTCCTTTTTCAGGTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTT</genome_strand>
        <mrna_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT................................................................................................................................................................AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E342154" ref_strand="+" ref_description="SGN-E342154 [cTOF-10-D13]">
      <seq>tttggtttgtggaaatggcggtgaattcgagccaagaggtgagcaaagccaagattccctgaattttgttaaattacctgacgaaggaaccaaaggtcctctttgtgaatcacatttggatatgttgaacctgaagactcaaatttcaatggatgccctatcaaatggtggaaaccatgccaacctgaaaaatgatagcttagatgcttatggctcatattgtttggccatagatattgacaaaagaaagtttgacgcacctaaatccactgaggaaatgaatgggaatgttaagatggatgactatgtatctagtatgtttcagagagaaatttcatcactgatgggaggaaagttcatgcaacagatgatgaataacagctttgagttgcccaaatttgcatgtaaagggaaggatgacagatctggttggtctttggtgaaataaccaagacatgtaacagtcttcgatgctcatgatgctagttaagaaagtagaagaattctctaagaatcaatgcattctcgataaatttttgaccgagaaggtatatgatacacctagcaacagattgagaaaatacaagcgctctgcatctttcaattcaggaagagttgttctccttttctcagtcatgtcgtgcatggggaccgatcgttctcatttatcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="33643" stop="26718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33343" g_stop="33301" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33300" i_stop="31240" i_length="2061">
            <donor d_prob="0.902" d_score="1.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31239" g_stop="30970" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="313" r_length="270" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30809" g_stop="30713" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="410" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30712" i_stop="30461" i_length="252">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="30460" g_stop="30343" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="528" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="30342" i_stop="29524" i_length="819">
            <donor d_prob="0.939" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="29523" g_stop="29415" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="637" r_length="109" r_score="0.991"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.922" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="27053" g_stop="27018" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="638" r_stop="674" r_length="37" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E342154" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33343" e_stop="33301"/>
          <exon e_start="31239" e_stop="30970"/>
          <exon e_start="30809" e_stop="30713"/>
          <exon e_start="30460" e_stop="30343"/>
          <exon e_start="29523" e_stop="29415"/>
          <exon e_start="27053" e_stop="27018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAGGTGAGGTTTGTTGCCTTATTGGAATCAATTGAGTTTTCTTAAATAGTACGCTATGTGCTTTTTTGAATCAATTTGAGCTTTTATTGCAGTTTTTGTTCAGTTCAATAGCTGCATTGTGCTGTTCCTGTTGTTTTTTTGGCTCAGATTTTGGTTATTGTTGGAGTTTTGATGTAATTTTTATCGGTTTGAAATGTGTTATCTCAGTCTATATGCTATGAGTGAATAACTGTTATTTCTGTAGAAATTATGGAGGTATGAGTGAGAACGGTTGTTATATTTGAGTTAATTGTGTTTTTTTGTGGTATTATTAATTTGTTGTAAGGAATTTTGATTTCTCTTTGCAAAAGCCTAAGTTCATTGCCGTCATTGAATCTACTGTTTGTGCAGTGAGTTAAATGCTTATATCTGTCATTTCTGTACAACTTATGAAGATAAGTGTTTTTGGAAGTTGTACAAATAGTAATGTGACAGTTCGATCTAATTGAGATGTTTTATTTTAGGCTTTTCTTTTTATTTTGTGTAGATTAAGCTGTATATCGATGTGTTCATTGTTTCCTGATATGGATACGATATTTTTTCTGTTGTAATTTCGCTGTAATTTATTTGATTCAATTTGTTTAGACTGGTTCACTTCAATGTGTTTTATGAATCTTAACTTCTATGTGTACCTAGTGCCAAAATGTTCTTCATGGTCATTGTGGTTGCAAATTTTATTTGTTTCTAGTTATTGAGATACAATTGGAGATATTACAGCTTATAAATGGAGTAAGTGTTGGTGTTTAACTCATATATGTTGTACCATTGTATTTTAGAGTAGATGTTCTTTTAAAGGAACCTTTATTTCCAGTCAGAAAGTGATACTGTGTTGCTTTTACTTCTCTTGTTTCATTAGCAAAGTGATGGTCAAAAGTTGAGGCCAGTTACTATTCTCTAGACTACATTGAACATCAAAAACACTTTGGATTCTATATGAGATTATTCAGCTCTAGGTGTGGATGTTCTTCTTGCACCAATTGAGTTTTGAAAAAGTTCAAATTCTTGGTCACTGTCTCTTAGATATTCTTAATTTTATATTCTATCACTATTTAATGCAAACTGGCGATTAAGCTTAAATGCAAGTCCTACGTTCTGATGCTTTTGTCATTGCTGAACCAATTATTTGATTGGCAAATACTTTGATGTGGTGTGGAAGATTTTATTTGTTTTGTATCTTGTGCCTTATAAGAGAGTGTTCTTGGAGTTTGGATTTTCATTCTAAAAGATGAACAAGGATAGCAGCAGACTTATGAATCATAGATGAGTGTTTCTTAACAAGAACAATCTACTTAGCAATTCCCCATATTATCGGTGTTGGATGTGAGGTCAGTAAAAATATTATAGAGTTGATTTAAGGTCATAATTAAGGGCCTTTCGGTGATGGTTCAGTTCTTAAGATCTAGGTTTTGTTTGGACTCTCCAAAAATGTTGTCACACCTGTGTCAGATCCGACACACACTCGATGACATGTTTGAAGAGGTCTGTACAACATAGCTTAAGATAACATCCAAATTTTGCATGACAATTGAAAATGTACCTTAGTTTTGCTTTCAGGAGTTCATATGATGACCTGGTTATCCATATCATTTAGAAGTATGATGTTTGCTATCACGTTTTCTCTTTACGACTTAATGCAGCTTAAACCTTTTAATACGAACATATCATGTTTAAAGTCCCTTGTCCAAACAACAAGAAGTACATGTTATATCATTTGATCAAGAAAAACGTAAAGCAGAATGCATCTTCTACTTTTTGTAGGACATTGCTACTATATATTATGTGCTACTATTATCTTCCTTTAGGCAATAGGTAATATTTCTTATGCTTCACCTATCTTTTTATGCGCACTTCCCTAATCATCAAAATTTTTCTAGTTAGCATTTTTTAACCCAATCTCTCTCATTTTTTTTTCTAATTATGACTAATTTGTTTGTTAGTTCATCATCATGTGCGCTTCTCTTTTTATTTGATCATCTCTTCAAATTCTTTTATTTAGGATTTTGAAGTAACTTTTACGATTTCTATTTCAGCAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCTGTAAGTGCCTCTTATGAATTTAATGATTTTAACATCATCATGTGGAGGATGTTAATTCTAGAGGGTTCTTATGGTGCTTTTTCTTATTTGGTACGAGTTTGTTCTCTAATTAAGATTTGTTAATGTAAAGCTGAACATCAACAAATTAATTGCATTTCAGAGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAGGTAGATTCTTTTCTGCAATCAATCACTCTGTTATGCATTTTCCAAATATGAATTTTGTTATAGATGATACCTGTTATTTTTCCTCTGCAGTTTTGCTTATTATGTTTTGAAATACATTTTATCGAATTTACTTGAGTCAATTGGATGCTTCTAATGAGCTTGAATTCTTCCAGAGTATTTTCCTATATTTTCACTCATAAAGATATATAAATGACTTATGTTTCAAAAATATTCAAAACTGGATTTCTTCAGGGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCGGTAAATAACTTTACGACATACTTGTGGATAATTCCTGTGATAGGTTCTTTTTTTTTAATATAATACCACGAGTGGCGACATGAAGTAGATAATGACTTGTAACTATGTTTGGTTACAGTGTCAATGATATTCTGCTCTTGTGATGTCAAAGCTGAAACTTGTTACACTAACTTACTCCCAAATCTGTAGTCAAACACCTAATTTTTTCCCTGTCCAGTGTTATCAACTTGGTTGCAAAAGGGTTGTTAGTGCATACTTTGAAATCCACTTGTTATAGTTCTTCTTCTTGCAGTTGTATTGGGGAAACCCTGTAAAACCTTGTTATTTAACTAAATTACAATCTCAACATCTCAAAAGTTAAATATAATTGGCTTATCACGTGCATGAAGTGCTCCCCAGACCCCATGTCTGTTCTTATTTCCTGAAGATTTCTCTACTGATGAAAACGTTTGATGTTGTTCCTAGATCAACTTGTCATTTCTAGGAAATTAATCAAAATATATGTTTTACCATGGTATATTATCAGGTCTACTTACTCTGATCAAAAAGAAAATTATAAAATATACTTAGATACTTAAGTTGGCCTTTGCGAGTTGCAACTGCTCTGATTAGACAGCATCAGTAGATATCACTGGTCATCCTGTCTTCTATTACAGTTGAGTAGTTGATAGTTTCCGTGTAATAAAAGAGCAAGTAAAGGTTCAATGACTTTTCATTTTTCAGTTAGCTGAAAAAGGTGGTTCCTACCAGGACCGGATTTGAGCTTAAGTTGTACAATTAGATGAAAAGTTCACAAATGTTTCTTGTTTTGAATGGCAGATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCATGTAAGTTTAATTCCTGAATCCGTTCTTTTCATGTTATGCTTCTTTCCTTTTTGGTGCTAAAAGCATTGCATTCATTACATTCATTACCAATACTATATTCATTTCTCATAATCTGTCAAGTTGATGTAGTTTGTGTATCAGCAGGCTCGGCTCAACAAGAGTGTGAGGCCTAAGCCAAATTTCACAAAGAAGCCCTAAAAAAAATTAGCTTTTAAATTTTAATGTCAAATCATATTTTCTAGTTGACATTTAAATTGAATAAATTCTTATAATAACTAAAACAAGAATATATATCTAAAAGTACTTAGTTGATTTATTAATCTAAATCTGACCTGTTGGGTCTATTTGGCCCCCAAAAAAGAGTATATATTTATGAAGGAAAAATATCAGCAATGACAATTTTAGTGAAAAAATATAATATAAAATTAGAACAATAAAACTTGACTTTTAAGTTGATAAAATGATATAGAATTAATGTTGTGTTGCTATGATATAATGATTGGCTGTTGCAATGCTTGAACTTTTTGCAGAATGCAAAAGGTTTGGTTTGACTGTATAATATTGGAAAAAGGGTCAAAAATACCCTTGAACTATCAAAAATAGCTCATATATACCCTTGAAGTATATTTCGGCTCAAATATATCCTTACCGTCTAACTATAGGGTCAAAAGTACCTTTTTCATTAACATAATCGGTTAAACGCCACTTAGATGCCATGTGGATGTCACATGGCATGCCACATAAGCCAATAGTGTTTCACTCATGCCACGTAGACTAATAAACTTACCCCTAATTTCCCCAATTTTCTCCATTTTTCGTAGAATTTAGAAATGATTTCACTGAAGAACATAAAACTCTTTTCCTCATTTCTCCATTTCCTTGGAACGATTTCACAAAATACGTAAGTTCTAAGGGAAAGGGTTATCTATGTTCTTCAGTGAAATCGTTTCTAAGTTCTAAGGGAAATAGAGAAAATTGAGGGAAATTAGGGGTAAGTTTATTTTCTACGTGGCATGAGTGGAATTCTATCGGCTTATGTGGCATGCCATGTGGTATCCACATCGCATCCAAGTGGCGTGTAACATATCCTGTTAATGAGAAGGGTATTTTTGACCCTATAATTTGAGGGGAAGGGTATATTTGAGCCGAAATATAGTTCAAGGGTATACTTGAGCTATTTCGAATAGTTCAAGGATATTTATTACCCTTCTTCGTGTAATATTTAATGATAAGAGAATAAGCATAGTGGAAGGAAAAATGAAAAAAGTAAATATAGGGAAAATGTGGTCCATGATGTTGTTATTGGATATGAATGAGGTAACAAAAAAAGTACCTACATAAAAAAAACTACCATTACTTAAAAGTTATTTAATTTCCCAAGCAACTATCCCCACATTAAAGTAAAACAATATTTTACTTTCTACCCAAAAATTTCTCTTCAAATCCAACAATACATGGGATTTTCTTCAAAGATAAAATATATAGAACACATCCTTAGGAAAAAGTGCATCCCCGAAAAAGTTGGGGCCCCGAGCCATTGCTTTAGTGGCTCTATAGTAGAGCCGGTTCTGTGGAATTTAGATGATGAGAATGAGCTGTCATGTGCAAACATCTGCATGAAGGAATATGGAACAAGTATTGCACAACCAACCATAATAATTGAGGGTAGAAATGTTTCACCAAGCTAATCGTTTTGAAAGCTATGAATTCGTACTGCTTGTTATCCCTTGATTTTGAATATTGTAGGTTATAACTACCTGAAAATGGTAGACTGTAACACGGTTTCTGAATGAACAAATGTAACTTTCAAGTTCTATGCTCTCTTTTATCGAATACACGTGCTAGCACCCATGTCCTTTTTTCTCTGTGTCATTGTCTGAGTTCTTGGCTGTCTGTGTTTGAGATGGATATTTATTATTAGAGCTGCAAGTAACACAGACAGGATAGGAATAATAAGGTTAAAAGGATGTTGTTTATTACAAAGATATGTAGGGTTGGGATTTGGCAGGGCGAGATGTTAGTTGGTCATTAGATCTTTGAGTTACGGTGTTTGTACAACTTAATGACCGGGTGGGTGGGGAGATGGTGAGGGGGAAGATTTAATTGCATGGAATTCATTGTCAAAGCCTACTGATCAGAGTTGAATGCAGATGTTAAGATGTCAGTCTACTATACAAAGTGTTCTCTTTCATTTGTCTTGATACTCACTAAGTTGTTGGTAGGCTAATAATGATTCTACTCGGAAAAAAGCTGAGAAAATGCATCAATTAATCTTTTGCTCCATATATTACTTCTGGGTTTTAGTTATCGCTTCTATACAGCTCTAGCAATCGACTATAAGTCTCTTCCTTCCTTTTTCAGGTCGTGCATGGGGA-CGATCGTTCTCATTTATCTTAC</genome_strand>
        <mrna_strand>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAGGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT................................................................................................................................................................AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG............................................................................................................................................................................................................................................................GGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAGGAAGAGTTGTTCTCCTTTTCTCAGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGCATGGGGACCGATCGTTCTCATTTATCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E243831" ref_strand="+" ref_description="SGN-E243831 [cLED-35-C9]">
      <seq>tgaattcgagccaagaggtgagcaaagccaagattccctgaattttgttaaattacctgacgaaggaaccaaaggtcctctttgtgaatcacatttggatatgttgaacctgaagactcaaatttcaatggatgccctatcaaatggtggaaaccatgccaacctgaaaaatgatagcttaaatgcttatggctcatattgtttggccataaatattgacaaaagaaagtttgacgcacctaaatccactgaggaaatgaatgggaatgttaagatggatgactatgtatctagtatgtttcagagagaaatttcatcactgatgggaggaaagttcatgcaacagatgatgaataacagctttgagttgcccaaatttgcatgtaaagataaatttttgaccgagaaggtatatgatacacctagcaacagattgagaaaatacaagccctctgcatcttttcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="33622" stop="29147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33322" g_stop="33301" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33300" i_stop="31240" i_length="2061">
            <donor d_prob="0.902" d_score="0.00"/>
            <acceptor a_prob="0.923" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31239" g_stop="30970" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="292" r_length="270" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.959" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="30809" g_stop="30713" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="389" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189">
            <donor d_prob="0.950" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="29523" g_stop="29447" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="467" r_length="78" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E243831" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33322" e_stop="33301"/>
          <exon e_start="31239" e_stop="30970"/>
          <exon e_start="30809" e_stop="30713"/>
          <exon e_start="29523" e_stop="29447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAATTCGAGCCAAGAGGTGAGGTTTGTTGCCTTATTGGAATCAATTGAGTTTTCTTAAATAGTACGCTATGTGCTTTTTTGAATCAATTTGAGCTTTTATTGCAGTTTTTGTTCAGTTCAATAGCTGCATTGTGCTGTTCCTGTTGTTTTTTTGGCTCAGATTTTGGTTATTGTTGGAGTTTTGATGTAATTTTTATCGGTTTGAAATGTGTTATCTCAGTCTATATGCTATGAGTGAATAACTGTTATTTCTGTAGAAATTATGGAGGTATGAGTGAGAACGGTTGTTATATTTGAGTTAATTGTGTTTTTTTGTGGTATTATTAATTTGTTGTAAGGAATTTTGATTTCTCTTTGCAAAAGCCTAAGTTCATTGCCGTCATTGAATCTACTGTTTGTGCAGTGAGTTAAATGCTTATATCTGTCATTTCTGTACAACTTATGAAGATAAGTGTTTTTGGAAGTTGTACAAATAGTAATGTGACAGTTCGATCTAATTGAGATGTTTTATTTTAGGCTTTTCTTTTTATTTTGTGTAGATTAAGCTGTATATCGATGTGTTCATTGTTTCCTGATATGGATACGATATTTTTTCTGTTGTAATTTCGCTGTAATTTATTTGATTCAATTTGTTTAGACTGGTTCACTTCAATGTGTTTTATGAATCTTAACTTCTATGTGTACCTAGTGCCAAAATGTTCTTCATGGTCATTGTGGTTGCAAATTTTATTTGTTTCTAGTTATTGAGATACAATTGGAGATATTACAGCTTATAAATGGAGTAAGTGTTGGTGTTTAACTCATATATGTTGTACCATTGTATTTTAGAGTAGATGTTCTTTTAAAGGAACCTTTATTTCCAGTCAGAAAGTGATACTGTGTTGCTTTTACTTCTCTTGTTTCATTAGCAAAGTGATGGTCAAAAGTTGAGGCCAGTTACTATTCTCTAGACTACATTGAACATCAAAAACACTTTGGATTCTATATGAGATTATTCAGCTCTAGGTGTGGATGTTCTTCTTGCACCAATTGAGTTTTGAAAAAGTTCAAATTCTTGGTCACTGTCTCTTAGATATTCTTAATTTTATATTCTATCACTATTTAATGCAAACTGGCGATTAAGCTTAAATGCAAGTCCTACGTTCTGATGCTTTTGTCATTGCTGAACCAATTATTTGATTGGCAAATACTTTGATGTGGTGTGGAAGATTTTATTTGTTTTGTATCTTGTGCCTTATAAGAGAGTGTTCTTGGAGTTTGGATTTTCATTCTAAAAGATGAACAAGGATAGCAGCAGACTTATGAATCATAGATGAGTGTTTCTTAACAAGAACAATCTACTTAGCAATTCCCCATATTATCGGTGTTGGATGTGAGGTCAGTAAAAATATTATAGAGTTGATTTAAGGTCATAATTAAGGGCCTTTCGGTGATGGTTCAGTTCTTAAGATCTAGGTTTTGTTTGGACTCTCCAAAAATGTTGTCACACCTGTGTCAGATCCGACACACACTCGATGACATGTTTGAAGAGGTCTGTACAACATAGCTTAAGATAACATCCAAATTTTGCATGACAATTGAAAATGTACCTTAGTTTTGCTTTCAGGAGTTCATATGATGACCTGGTTATCCATATCATTTAGAAGTATGATGTTTGCTATCACGTTTTCTCTTTACGACTTAATGCAGCTTAAACCTTTTAATACGAACATATCATGTTTAAAGTCCCTTGTCCAAACAACAAGAAGTACATGTTATATCATTTGATCAAGAAAAACGTAAAGCAGAATGCATCTTCTACTTTTTGTAGGACATTGCTACTATATATTATGTGCTACTATTATCTTCCTTTAGGCAATAGGTAATATTTCTTATGCTTCACCTATCTTTTTATGCGCACTTCCCTAATCATCAAAATTTTTCTAGTTAGCATTTTTTAACCCAATCTCTCTCATTTTTTTTTCTAATTATGACTAATTTGTTTGTTAGTTCATCATCATGTGCGCTTCTCTTTTTATTTGATCATCTCTTCAAATTCTTTTATTTAGGATTTTGAAGTAACTTTTACGATTTCTATTTCAGCAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCTGTAAGTGCCTCTTATGAATTTAATGATTTTAACATCATCATGTGGAGGATGTTAATTCTAGAGGGTTCTTATGGTGCTTTTTCTTATTTGGTACGAGTTTGTTCTCTAATTAAGATTTGTTAATGTAAAGCTGAACATCAACAAATTAATTGCATTTCAGAGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAGGTAGATTCTTTTCTGCAATCAATCACTCTGTTATGCATTTTCCAAATATGAATTTTGTTATAGATGATACCTGTTATTTTTCCTCTGCAGTTTTGCTTATTATGTTTTGAAATACATTTTATCGAATTTACTTGAGTCAATTGGATGCTTCTAATGAGCTTGAATTCTTCCAGAGTATTTTCCTATATTTTCACTCATAAAGATATATAAATGACTTATGTTTCAAAAATATTCAAAACTGGATTTCTTCAGGGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCGGTAAATAACTTTACGACATACTTGTGGATAATTCCTGTGATAGGTTCTTTTTTTTTAATATAATACCACGAGTGGCGACATGAAGTAGATAATGACTTGTAACTATGTTTGGTTACAGTGTCAATGATATTCTGCTCTTGTGATGTCAAAGCTGAAACTTGTTACACTAACTTACTCCCAAATCTGTAGTCAAACACCTAATTTTTTCCCTGTCCAGTGTTATCAACTTGGTTGCAAAAGGGTTGTTAGTGCATACTTTGAAATCCACTTGTTATAGTTCTTCTTCTTGCAGTTGTATTGGGGAAACCCTGTAAAACCTTGTTATTTAACTAAATTACAATCTCAACATCTCAAAAGTTAAATATAATTGGCTTATCACGTGCATGAAGTGCTCCCCAGACCCCATGTCTGTTCTTATTTCCTGAAGATTTCTCTACTGATGAAAACGTTTGATGTTGTTCCTAGATCAACTTGTCATTTCTAGGAAATTAATCAAAATATATGTTTTACCATGGTATATTATCAGGTCTACTTACTCTGATCAAAAAGAAAATTATAAAATATACTTAGATACTTAAGTTGGCCTTTGCGAGTTGCAACTGCTCTGATTAGACAGCATCAGTAGATATCACTGGTCATCCTGTCTTCTATTACAGTTGAGTAGTTGATAGTTTCCGTGTAATAAAAGAGCAAGTAAAGGTTCAATGACTTTTCATTTTTCAGTTAGCTGAAAAAGGTGGTTCCTACCAGGACCGGATTTGAGCTTAAGTTGTACAATTAGATGAAAAGTTCACAAATGTTTCTTGTTTTGAATGGCAGATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATC-TTTCAAT</genome_strand>
        <mrna_strand>TGAATTCGAGCCAAGAGGTGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAAATGCTTATGGCTCATATTGTTTGGCCATAAATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT................................................................................................................................................................AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCCCTCTGCATCTTTTCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E377351" ref_strand="-" ref_description="SGN-E377351 [TUS-21-G16](-)">
      <seq>ttttttttttttttttttttttttttttttttttttaaaggaataaaaaataaatattacattatcataaatctctgggagacataaaattattattataatatcgcaagcgattaaaatttaataattgtaaaataacaaattaaaggggtcgggatatatacaactagggtcaaagtttgggatgatgcatgaattgcatgccctacctagtttattttggtcaacgaaacagtgacatttacaaacataattttttccatcgccttgcgatcgttggcaattacttggttatacttggggaaaacttgatccatattcaattcatcatgaccaaaatagctaacaagtaaaggttcagccacagatctaaagctttttgccatattgtatttttcgtcatcacaagaattcctttgaatttttgaagttttcaagatatcaatggggaaagaactctccttttcaactatatacatcacttctgatggagatggattgtataaaggaatattgaatgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="+" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="45110" stop="58514"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="47469" g_stop="47515" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.660"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="47516" i_stop="47967" i_length="452">
            <donor d_prob="0.000" d_score="0.66"/>
            <acceptor a_prob="0.000" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47968" g_stop="48033" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="112" r_length="65" r_score="0.848"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48034" i_stop="52264" i_length="4231">
            <donor d_prob="0.000" d_score="0.84"/>
            <acceptor a_prob="0.597" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="52265" g_stop="52288" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="136" r_length="24" r_score="0.708"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="52289" i_stop="54994" i_length="2706">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54995" g_stop="55007" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="149" r_length="13" r_score="0.769"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55008" i_stop="57839" i_length="2832">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.939" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="57840" g_stop="58214" g_length="375"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="523" r_length="374" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="+" ref_id="SGN-E377351" ref_strand="-">
        <total_alignment_score>0.914</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377351" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="47469" e_stop="47515"/>
          <exon e_start="47968" e_stop="48033"/>
          <exon e_start="52265" e_stop="52288"/>
          <exon e_start="54995" e_stop="55007"/>
          <exon e_start="57840" e_stop="58214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTAATTTTATTTATTATTGAGTTATCGATTTTTAACGGTTTAAAGTTTCTATTAATAAGTTAACTAATAGCCCGATACTAAATTAATTAATTATATTTGTATCATTCGATATATAAAATTCTTGACTTAGGATTTAGTTTCATATTTTTTGTTTCTGGCAGTTTCAAGCTTTTAGTTATTTTACAAGGTGTTAGTGTTATTTTTTTTAATCAAGATACAATCTATCAACTCATGTTTATGGTTTATCTGATTCGTCACTATGTTTCTAATTGATTTTCAATCATTTATTTTTTTGTGTCAAATCTTAACCGAATCAATAAGTCAATATCTTAATGGTTCTTAACGATTTAGCATGTCTACAGACGAATAACTGATAAATCAAACCAATAAATTTCAAAATCGAATCAAACCGAACGGACCGATATACAACCCTACAATCTCCTTTCTTTGAAGATATATAGAAACTCTACCCGTTGAAAATAATTACTTTTAAGGAATAGAAATATTACATTATCATAATATCTCTATGAGATATAAGATTATTATTACAATATCACAAGGGTCGGGATATAGGGCCAGGGTTCGTGACGATGCACGAATTGCATGCCCTAGCTAATTTATTTTGGTCAACGAAATAGTGACATTTACGAACATAATTTTTTCCATCGCCTTGCGATCGTTGGCAATTACTTGGTTATACTTATGGAAAACTTGATCCATATTCAATTCATCATGACCAAAATGGCTAACAAGTAAAGGTTCAGCCACAGATCTAAAGCTTTTTGCCATATCGTATTTCTCATCATCACAAGAATTCCTTTGAATTTCTGAAGTTTTCAAGATATCAATGGTGAAAGATCTCTCCTTTTCAACAATATGCATCACTTCTGATGGAGATGGATTGTATGCAGGAACATTGAATGAATCCACTTTTTCTGCATCTATTGATTCCTGTATATATTAATTATGTTATTTATGAACATTAACTTATATGTGTACTATAGTGTAAAATAACTTTATACTATTAGTTCAGAAAGAATTTATATTATCAAATCACCTAATAAAGAAAATCACCTAATAAAGAAATTTGTTATTGACAAGCTATTATACTAGGACAAAAAATATCTTAACTCATAAAAAAGGATTTTAAAAATTGGAAGTTATTAGTGCTTAGAGATAATATAATTTTAATGATAATTTATTTTTTATGACTATGATGTCTAGGTTAACTTTTATGCACTTCGACTAATTCTATAAAATACATATACCACCTCTCATAAATACCAAATAATTTGGTCCACCAAGATAATTGTGGTGTTCAAGTTAAATTTCGCGCACCTTAAGTAATTTAATGGGATACAATCACCCCCTACCTGTGCACCTCGACACTCTAAGGGATACCTACCACCTCTCACCAACAACAAATACTCCATCCGTCCACTATTTTTTGTCATAATTTTTATTTTTAGAGTCAAACTATAAGAACTTTGACTAACATTTTAAGATATTTTTTTTCATCATATTGATATGCAAAAAATTATAATTTATAGTTTTTGAATATCTAAATCTTTTGTCTAAAATCTCGAATTAGCTTAATCTAATTTAACATTGAAAATTAGTCAAACTGACTTTCAAAAAACGCTACATGACAAATAAAAGTGAACAAAGAGAGTATCAAGTAACTTGGTCAACCAAGATAACTATGGTGTTCGAACCAAACTTCAATCAATTTCAGGGGATAAATGTCACCTACTACTCGTGCACCTCTATTAACTCTATGGGATGCTTGCCAAACATATACCAAGTAACTAGCTTCATAAAGATGATTGTGGTGTCCGGACTAATTTCATTGATCTCGATTAATTTTATGAAATACATGTCACCTCCTACTCGTGCACCTCGATTAACTATATGTGATACCTGTCAACTCCTACCATCAACAAATATGATATAACCCCGTCCACCAAAGTTAGAACAAATAGAAAGAATCACCCAATATTTTTTTTTATTACTATTAAATTTTAAACCTGAAATCTCAAAATTCTCAACCACTTACCCTGGATCAATGGTGCCCATTAATATTATTAAAGTATCTTTTTTCTTAATTTTTTTTTAATAAAAAAAGACACACACTTACTTGTGCAATCAGAAGCTTGAGCGTCGTAGCCAAAAGTTCCCACTCATAGGAACACCCTTGGCTGAAGCGATCTTCATTTTTTCTACCCAACATGGTCAATACCATACGCCCATTTTTCATCAATTCTTCTGAGCGATACTTTAAAAATGTTACAAAATCTCTCTCAAATTGCTCATAATATGCTTTATGAACACTTGCTGGGCTTGTACTTGTTAGATAGATATTTCCCTTATTATTCTTTATTCCATCGGGAACCTATACAATTAATAACTGATATTTAAAAGATCGAAACATATGTATCATTTAAATCAATAAATAATGACTTATTTATGGTATTTCAGTTAAAAGTTATAAGTTTGGCTCATCTAAGTCATTTTCATTTGAAAAAAAATTCATATTATATGTGTCATTATTTGTTAACGGAAAACTATTCTGATTTTGCAAACTCAATTTCATTAGTGGCCAATAGCACGTAATTATTTTTTTTAATAAGTAAAAAAAACTCAATTAAATAATGACATAAATGAATATTTTTTTCAAATGAAAATGACTTAAGTGAGATTAATTTTTAACAAATAACACATATTTAAGACTTTCTTCCTATTATTATATTAGCATTAGAGATTGATACATACTTGAGAAAGCCAATGAAGACTATAAGAGGAGTGGACAAAGTGTAGGCTATTGGAAGGAAAAAGTCTAGTATAAAATGAACCAGCAACTCCTGTCACAAAGCAATTTGAAGGATCAAATAATGATCCATCTTCTCCCATATTTTGCTTCCTCAAACTTTGATGGAATGTTGGTAGCAATCGAAAAATGGTATTGAAATCATTGCTAGGAAGATCATTCAAGAAAACATGAAATTCCGGCGCCTTATGACGTCCCTTCTTTTTTCTTTCTTTATCAATAGTTTGAATGAATTGAGAGACTGACAAAAAAGTGTTTGGTCCAGAAGAACAACCTAAATCCGCAATGCATATCGTTTCTCTTGAGGAAAGGTTGTTGTAGAGAGAAGATATGGCTTCATCTGTTATTGATTTCGTCATGAGGATCACCTTTTGCTGTAGCAATTCAAAAAAAGGACATTGTTATTTACGTAACTCATTGGAGTTCATAACAATTGTGGTAGGTCAAAATCTTAACTAAAACTGTCACTACTATAAGAACATTGTCGCCGAAAATTAGTATGAAAATTTGCTGAAAAATAAGTTTTCTTGTGGCGTGTGTGATATATAGTACCTGAAGCAGAGAATTTTTGGCATAGCTAGCATCTCCCATTCCTCCATTCATGTGAAGAACTTTAGTGACCTCCATCTTTTATTTTATGTGTGTGTATCCACTTTTGGCTTAATATATTTTCAATTAGATTGTTTGGTGGGGGGCTATTAAATATGTTTGGTACCACACTTTAACTTTATGTAATATCTATCACATTTATCTATCATGTTACTATATCTAGCTAGATACTACTCATTTTAATATCTAACCAATATTGATGACGTGAAAGACTTCTTCACCTATAAATAGTGGTGCACGTTCCTTTGTGTTTAATAGGAGATGATAAAAAATGTTAATTGAGATTAATAAAATATTTTAAGTCTTCAAATATATTTTATTATTTAAAAGAAAATATTTATATATTAGAATGAATTAATGTGTTCTTAATTAAATCTGAATTGGTTGAGTTGTACATATTTGGATATCAGGAAGGAGAGGACATTCTAATTTTGGAACCTAAACGGCGTGCGGAATTGGTGCAACCTCACGTTTATGGGTTGTTGTATATATTTTGAAGGAGATAAGTCAAGAGATATACTACTGGATTGGTGTAGATTATGTCACCGCATAGACTTGAATCTCTGTTAGAGAAGTGATATATATGCCTTAGCCTAAATATTTCTTATTCGCTTTTGTTATTTTATTTTCGACCAAAGGCTGTTGGCTATTACATTATTTTTCTTATGATGGATTCTGTAATACCAATGAGCTTGCTAATTTTATTTTCTTTCTTTTTCTTCAATTGAGGCATTGTAAACATGCATATATAGTAGACGTGCTAGATATTGGTCCACTTTGTAGAGCTAATATTTTGATTTAAGTGAAACAAAGTTTTGATTCATAGGATATGATTTAAGCATTTCTTTCTTAAGCCAATTTTTGACAAAATATTTGTTTACCCTAACCTTTATGTTTACATCAATTATATATGTAGCTTTCCATTTTCAACTTTTCTCTTAAGCTCCCCCTTATATCTCCCCCTTTTATTTAAGGAATATGTATTGATTAAACATAAAACGAAAACTTTTTAGAAAAATGTCCAGCAGTGTAATTCATGCGCATTTTTTTAATCACAAATAAAATTAGGATACGTAGCACATGGACCTAGTTTACCAATAAAATTTAACTTCTCTATTTTTTAAAAAATGAAAAATATCTTCAAACCTTTATTTAATAATCACAAAAAGATTAAAAAAGAAAATTTCTCTCACCCCACCTAACCACCCTTTGATTTAAAGATTTTTTTTTTTCAAATGTCAATATTTTAATATTTAAAAAGGGTAATTAGCAACACTTTCAATATTTAGTAAAAATGCCAAAATTTTAATTTGTTATATATCTTATTTATGTTTTTATAATTTATTTTTATTTAAAGAATAAAATTATATAATAACAAAAGGGAGAAAATCAATGGAGAGAATTTTTCAAAAAAAGGTAAAGATCACTTAATTTTCGCATCAGTTACATTATAAAACTCAAAATTTGTTTTTTTTCCTCCATAATCTTTATCTTTTTTTTTTATTAGTTTGTGTTCATTCCAATAGGTATGCCAAATGAATATATAGTTATTTAAGAAACACATTTGTATTCATATATTTTTTTCATGTGTATTTATTTGTTTCTTCAAAAAATTTATATTTCGTATTCATTTCAATATGTATTTTATTCGTATTTCTATTTATTCTAGTTTTTATTTAGAATATTGTATAATAATATATAAAATACAAAAAAGTAGTATGATGAAAAAGTGAGATATTAGTTTTTAGAGAAGGAATATATCACTTAAAATTAGCATAATTAACAACTGGTTCGATTTTTAAAATATTAAAATTGGCCTTATACTCTTCTTTTCGATTTTGCCATTATTCGCTTCTTTTCCTTCTTCTTATTCATTTTCTTCATCCTTTTCTTCTACTTCGTTTGCTTCCTCTCTGTTTTTTTTAAAAATAAATAAATAAATAAATTAACATATCAAATATGAGAATCGTTTCAAGTGAATTATATATCAAAAAAGATTTGAAACATTGAGAAGATTTTATATTTAAAATGTTGGGACTTTTTAGAGGTAATTTTAAGTTGATCAAGATTTAATAATCAATGTATAATTAGGCTATATTAGTTTTTTGATTGTATCGTAATGTATTGTCATCACATAACTCATGTATAAGTAAGCTATATTTATATATGCAGTGTATACCTTTTATGACTTTTGGCAAGCTATATTGAATTTATACTTCCTAAGATTTTTTACTACTTTTTATGTTTAATAAAACATGACTCTATTAATTGTAAACCAATTACTTTATAGTCAATATGTAAAAGTAGCACAATTTTTTATGGGCAACTTTCACATATAGCAAGATAAAATTTATATTTGTATGCTATAATAAAGTTTACATAATTGCACTCCATAGCAAACATATAAATGTATAACTCGCTATACATATACAATTGAAGCGAATTGTATAAAACGAGAAAAAGAAAGAGATTTGGGTAGAGAATTGTAAAAAATGAATTGTATAATTATAAGTGTATAGAACGATTATATATAATTTAAATTTGTATAAAATGAGAAAGATGAATATACAATTGAATCGAATTGTAAAAACGAGAAAAAGAGAAATTATATACAATTTGTATAAACGAGATAGAGAGAAAGGCTAAAGAAACTGGGCAAGGGAGTATTTTTATTGTATAATTATAAATGTATAGGACAAAAATATATGTATTTGCATGTGTATATATAATTTTCTCTCGCTTTATACAATCAGATTCACAATTTATACATTTCGTTTCGGTTTATATAAGCGAGAGAGGCGAGGGTGGCAAGCGAGATCTGGGAGAGGGGAACAAAAATATATGTATTTATACAATTTCCTCTCGCTTTATACAAATAGAAATCGATTTTATACACTTGTGATTTATAAAAGTGAGAGGAAGCGAGCGAGAGAGGAGAGTGGCGAGCGAGAGTTTGAGGGAGAGAAGTGACTGACAAACAGTTTGCTACGAGACAAAATTAAATCAAAGGATGGTTGTAGAAATTAATTTGATTTATTAATTTTTCATTATATACAATTTTCTCATTTTTTATTAGCCTTTTGGTCGTTGGGGTTGTAGATTTTGGGTCGGGTCAAAGCTTTTATATTGATATTTTATAGATTAAATTTTTGTAGAAGAGTAACAAAGAGTACACCAAATTTAGATTTTTAAAAAAAATTAGAAATGATATAATCAAATGATTTTTTCTCTATATATATCCTATTGACAATCAGTGTTCTTGCATTAGTGCAAAAAGTAAATCTAAATCTTAGGGCGCAACACTCATTTAGAATGGTATATACTCCAATCAAATTTTCTTCATATTTAAGATTCAAAGTTTAAATTTTTAATTAATGATAAAGTAGCTTCAAAACTGCACCACAATATATATCGATAATTTACCCCCAACTAATTGATATTGTTATTTATTAAATTTTACGGTGACACACAACAATTCAAACCCAAAAAACGTACGCCACCTTCTGTACGTGTGATTTTCAATCCACTTGAAGAATACAGCTGCAACAGTGTGGGGGTACAAACTACAAACCAAAATGTGCCCTAAAGGACAAACACACACACCAAATAGGATCAACATCTTGTCACCTCAACCAATCAAGTGATCACATTCATTTTATTTTTTTCCTTTTTCTCTTCTTGGATTTGCCACTTGATAGTTGAGATTTGGTAATCATTTTGTGTCCTACTAAATTCATGTTTGCACAATTTTGTAAATGAAATTATATTCATTTTATGTCTCATCTCGTTTGGAAACGTGATTGTCACGACCCAAATTTTGCAAGTCGTGATAGCACCTATGTTCCCAACCAATAGGTAAGCCAACCCAACATATTAACCCAACTAAACCAATAAATGAGTAAAAAAAGACTAACACTTAGCAAGAATCTCCAACATTGAGTTCCTTATAAGTACGAAATGCGGAAGATAAAATATATCACCCCAAGAATTGGTGTCTTAAATACAAGAGCTTCTAAAATTCGATGCAAGTCTGAAACTAAATGACAAATCTAATATAAGGGATATCCTGTTTTAATACTAATAACAGAATAAATAAAAGATAGAGGGAGATGTGGGCCATGAAACAGCCAAGCAGCTCACCACAACTCCAAGCTCGGACTCAAATTGCTCCACGAGATGTGCTTCTACTCGAAATCAAATCTGCACCACAAAGAGTGCAACAAGCGTAGTATGAGTACGAAACCACGTGTACCCAGTATGTCTCATTGACCGACAACGAAGAAGTAGTGACGGGAGTTATATAAGAAAATAAATTCTTAGATTGTACAAGTATATATATATATATATTACACTTACTATTTAAGTTTCATCAATAAAGGAAATCAACATTTAATATTTTCCAAACACCAAAAGAAACATATAGTCATCAAGAATGAATGATGGGATGAAATGCAATGCAATATGATGCCATGTAATGATATGTCTCAGAATACCCAGTACACATTCAACTGTATATACATGATACTCCTCGGAAATACATCGAGAGTTCATGACCCACGGGACTCGTGAGGTCCATATACCGACACGGACGATCTCCACGTGTTTGTGCGGACGATCTCAACGCACTATCATAATATCAAACAATTTGCGCACGACGGTCTCCACGTGCCTAAATTACAATCTTAACATCTCACCATCCCCAGCACGGACGATCTCCACGTGCCCAACTTATACTCAGTCTCATCTCTATGCATGTGCACAATATTGTTTCAATAGAGGGGATGATGATGCATCTCAATCAATCAATATGAATATAATACATAACCACCTCAATTATCTCAACTATACGGGTGAAGTAAATAAAACACAATCACACAAGGAATTCAAGTCAATAATATATCAGCTAATGCCCATATGCTTTGGCATTCTCAAATTTCAATCCACATTCTATAATAGAAATTTTCCGTTTTATAACACCGGTACTCGTACCAATGCCCGTTACACCATTGATACGAGACCACCATATTTTCCCCTTACCCCTTTGTCTATTTTTATTTTTAATCTTTAATTAGGAAAACGTCCTTCAACAAGTCTAACAAGTCTTAACATACCTTAGTACCGAGCTTGTGCCACGAATCTTTTAAGATTTTTCCTTTCCTTTTCGCACGGTTTCGGAACGTTCCCAATCTACCAATTTTGCAATATTCGTAAGTAAGCAATTTTTTGTAGACATTCAATTTATTATATGTCTATCATAGACGCTAACATTCACTCATTTTTTTTCAACAAACTCCAAATCTTGATATATATTGGCATGCCAAATTTTTCATACTTGCTAAATTTCAAGCCAAGAAATAACTCTAACCTCTTCAAATGGACTAAAATTCAATGTTAGATCATATAAAATAACACCTAATAATTAATTATCAATCCCAATATATATTAAAAACTAGCATTTTAATATACGAATAAAACACGAACCAACTTCCCACCCATTGGCAGAAGTGGAACGCCCCTCCCCCCCTTTTCACGTTTTTTTTTTGCAGAAACTCATTTGTAAACAAGTGCCAATTTTCTAGAATATTTATCAAATTCCAATCATTGGCAATCATTGACAATGATTGGCTCAATCTTATTCCTACCATTCTGAAACTAACAATATATATAATAAATTCTTTTGATAAAATCACAGAAAACATTAACCTGCATCCATTCAACTATTCGACTTCGATCGATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGAATACTAACCCAATTGCTAACAATGTAATATAATTTAGTAATCATCACCAACTTACCCATTATTTCTTATCACCCATTATCAATATAGCATAAAATAATAACATAATGCCAACCACTCCGACAATATATTACTATATATAGAATTGAAAAGAACGAATATCTCATATCTTTACCTGAACAATGGCTATGATTTTTCTCCCTCTCGCTGGTCGCCTGTGGTAAGGTTTCGCCTCCCCACTTTTCGTTTTCCTTTTCTTCTAAATAAGAAATTATTAACCGTGAAACTCCACTAACCTATTATCTAATTATTTATTTAATAAAAGTTTCATCAATTGGGTACTCATAGTTATCTAATAGTTAAAAAATACCCCTTTAAATTTTCAAAAGGAGTCAAACTAGTCCTAGTTCTCAAAACGACCTAGCGGGTCGTTACAGTGATACAAAATTATGATTTGAAATCACACTAATATGAAATTAAAATTTTATTTAGATATGTATAAATCACACCAAAATTGATAATTTGAATGGATAAAAAGTTATGGTTCATCGGTCGTAGGTTATTGGCTTAATTAACAGTTTTAATTTTTTTTATTATCGAGTTATCGATTTTTAACGATATAAAGTTTTTATTAATAGGTTAACCAATAGCCCGATACTAAATTAATAAATTTTATTTATATCATTCGGTATATAAAGTTCTTGACTTAGGATTTAGTTTCATATTTTTTATTTCTGGCAGTTTCAAGCTTTTAGTTATTTTACAAGGTGTTAGTGTTATTTTTTTTAATCAAGATACAATCTATCAACTCATGTTTATGGTTTATCTGGTTTGTCACTATGTTTCTAATTGATTTTCAATCATTTATTTTTTTGTGTCAAATCTTAACCAAATCAATAAGTCAATATGTTAATGGTTCTTAACGATTTAGCATGTCTACAGACTGATAACTGATAAGTCAAACCAATAAATTTCAAAATCGAACCGAACCGACCGATATGCAACCCTACAATCTCCTTTTTATATATAGAAATTCTACTCGTTGAAAATAATTACTTCTAAGGAATATAAAATAAATATTACATTATTATAATTCTCTATGAGATATAAGATTATTATTACAATATCACAAGGGTCGGGATATATATTACTAGGGCCAGGGTTCGTGACGATGCACGAATTGCATGCCCTAGCTAATTTATTTTGGTCAACGAAACAATGACATTTACGAACATAATTTTTTCTATCGCCTTGCGATCATTGGCAATTACTTGGTTATACTTGTGGAAAATTTGATCCATATTCAATTTATCATGACCAAAAATGGCTAACAAGTAAAGGTTCAGCCACAGATCTAAAGCTTTTTGCCATATCGTATTTCTCGTTATCACAAGAATTCCTTTGAATTTCTAAAGTTTTCAAGATATCAATAGTGAAAGATCTCTCCTTTTCAACTATATACATCACTTCTGATGGAGATGGATTGTATAAAGGAATATTGAATGAAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAGGAATAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAATATTACATTATCATAA-ATCTCTGGGAGACATAAAATTATTATTATAATATCGCAAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAATTTAATAATTGTAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAATTAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCGGGATATATACAACTAGGGTCAAAGTTTGGGATGATGCATGAATTGCATGCCCTACCTAGTTTATTTTGGTCAACGAAACAGTGACATTTACAAACATAATTTTTTCCATCGCCTTGCGATCGTTGGCAATTACTTGGTTATACTTGGGGAAAACTTGATCCATATTCAATTCATCATGACC-AAAATAGCTAACAAGTAAAGGTTCAGCCACAGATCTAAAGCTTTTTGCCATATTGTATTTTTCGTCATCACAAGAATTCCTTTGAATTTTTGAAGTTTTCAAGATATCAATGGGGAAAGAACTCTCCTTTTCAACTATATACATCACTTCTGATGGAGATGGATTGTATAAAGGAATATTGAATGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236385" ref_strand="+" ref_description="SGN-E236385 [cLED-13-G8]">
      <seq>aataaagaataataagggaaatatctatctaacaagtacaagcccagcaagtgttcataaagcatattatgagcaatttgagagagattttgtaacatttttaaagtatcgctcagaagaattgatggaaaatgggcgtatggtattgaccatgttgggcagaaaaaatgaagatcgcttcagccaagggtgttcctatgagtgggaacttttggctacgacgctcaagcttctgattgcacaggtaagtgtgtgtttttttttattaaacaaaaattaagaaaaaagatactttaataatattaatgggcaccattgatccagggtaagtggttgagaattttgagatttcagatttaaaatttaatagtaataaaaaaaaatattgggtgattctttctatttgttctaactttggtggacggggttatatcatatttgttgatggtaggagttgacagatatcacatatagttaatcgaggtgcacgagtagaaggtgacatgtatttcataaaattaatcgagatcaataaaattagtccggacaccacaatcatctttatgaagctagttacttggtatatgtttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="50152" stop="48960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49852" g_stop="49260" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E236385" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49852" e_stop="49260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGAAAAATGGGCGTATGGTATTGACCATGTTGGGTAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAAGTAAGTGTGTGTCTTTTTTTATTAAAAAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGGTTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTTGGTGGACGGGGTTATATCATATTTGTTGATGGTAGGAGTTGACAGGTATCACATATAGTTAATCGAGGTGCACGAGTAGGAGGTGACATGTATTTCATAAAATTAATCGAGATCAATGAAATTAGTCCGGACACCACAATCATCTTTATGAAGCTAGTTACTTGGTATATGTTTGGC</genome_strand>
        <mrna_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGGAAAATGGGCGTATGGTATTGACCATGTTGGGCAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAGGTAAGTGTGTGTTTTTTTTTATTAAACAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGATTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTTGGTGGACGGGGTTATATCATATTTGTTGATGGTAGGAGTTGACAGATATCACATATAGTTAATCGAGGTGCACGAGTAGAAGGTGACATGTATTTCATAAAATTAATCGAGATCAATAAAATTAGTCCGGACACCACAATCATCTTTATGAAGCTAGTTACTTGGTATATGTTTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232784" ref_strand="+" ref_description="SGN-E232784 [cLED-8-D12]">
      <seq>aataaagaataataagggaaatatctatctaacaagtacaagcccagcaagtgttcataaagcatattatgagcaatttgagagagattttgtaacatttttaaagtatcgctcagaagaattgatggaaaatgggcgtatggtattgaccatgttgggcagaaaaaatgaagatcgcttcagccaagggtgttcctatgagtgggaacttttggctacgacgctcaagcttctgattgcacaggtaagtgtgtgtttttttttattaaacaaaaattaagaaaaaagatactttaataatattaatgggcaccattgatccagggtaagtggttgagaattttgagatttcagatttaaaatttaatagtaataaaaaaaaatattgggtgattctttctatttgttctaactttggtggacggggttatatcatatttgttgatggtaggagttgacagatatcacatatagttaatcgaggtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="50152" stop="49065"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49852" g_stop="49365" g_length="488"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="488" r_length="488" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E232784" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>488</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232784" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49852" e_stop="49365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGAAAAATGGGCGTATGGTATTGACCATGTTGGGTAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAAGTAAGTGTGTGTCTTTTTTTATTAAAAAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGGTTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTTGGTGGACGGGGTTATATCATATTTGTTGATGGTAGGAGTTGACAGGTATCACATATAGTTAATCGAGGTGCA</genome_strand>
        <mrna_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGGAAAATGGGCGTATGGTATTGACCATGTTGGGCAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAGGTAAGTGTGTGTTTTTTTTTATTAAACAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGATTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTTGGTGGACGGGGTTATATCATATTTGTTGATGGTAGGAGTTGACAGATATCACATATAGTTAATCGAGGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E236346" ref_strand="+" ref_description="SGN-E236346 [cLED-13-G19]">
      <seq>aataaagaataataagggaaatatctatctaacaagtacaagcccagcaagtgttcataaagcatattatgagcaatttgagagagattttgtaacatttttaaagtatcgctcagaagaattgatggaaaatgggcgtatggtattgaccatgttgggcagaaaaaatgaagatcgcttcagccaagggtgttcctatgagtgggaacttttggctacgacgctcaagcttctgattgcacaggtaagtgtgtgtttttttttattaaacaaaaattaagaaaaaagatactttaataatatttaatgggccccattgatccagggtaagtggttgagaattttgagatttcagatttaaaatttaatagtaataaaaaaaaatattgggtgattctttctatttgttctaactttggtggacggggttatatcatatttgttgatgggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="50152" stop="49102"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49852" g_stop="49402" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="452" r_length="452" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E236346" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E236346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49852" e_stop="49402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGAAAAATGGGCGTATGGTATTGACCATGTTGGGTAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAAGTAAGTGTGTGTCTTTTTTTATTAAAAAAAAATTAAGAAAAAAGATACTTTAATAATA-TTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGGTTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTTGGTGGACGGGGTTATATCATATTTGTTGATGGTAG</genome_strand>
        <mrna_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGGAAAATGGGCGTATGGTATTGACCATGTTGGGCAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAGGTAAGTGTGTGTTTTTTTTTATTAAACAAAAATTAAGAAAAAAGATACTTTAATAATATTTAATGGGCCCCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGATTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTTGGTGGACGGGGTTATATCATATTTGTTGATGGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E237438" ref_strand="+" ref_description="SGN-E237438 [cLED-19-A11]">
      <seq>aataaagaataataagggaaatatctatctaacaagtacaagcccagcaagtgttcataaagcatattatgagcaatttgagagagattttgtaacatttttaaagtatcgctcagaagaattgatggaaaatgggcgtatggtattgaccatgttgggcagaaaaaatgaagatcgcttcagccaagggtgttcctatgagtgggaacttttggctacgacgctcaagcttctgattgcacaggtaagtgtgtgtttttttttattaaacaaaaattaagaaaaaagatactttaataatattaatgggcaccattgatccagggtaagtggttgagaattttgagatttcagatttaaaatttaatagtaataaaaaaaaatattgggtgattctttctatttgttctaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="50152" stop="49137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49852" g_stop="49437" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E237438" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>416</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49852" e_stop="49437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGAAAAATGGGCGTATGGTATTGACCATGTTGGGTAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAAGTAAGTGTGTGTCTTTTTTTATTAAAAAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGGTTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTT</genome_strand>
        <mrna_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGGAAAATGGGCGTATGGTATTGACCATGTTGGGCAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAGGTAAGTGTGTGTTTTTTTTTATTAAACAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGATTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232732" ref_strand="+" ref_description="SGN-E232732 [cLED-8-M15]">
      <seq>aataaagaataataagggaaatatctatctaacaagtacaagcccagcaagtgttcataaagcatattatgagcaatttgagagagattttgtaacatttttaaagtatcgctcagaagaattgatggaaaatgggcgtatggtattgaccatgttgggcagaaaaaatgaagatcgcttcagccaagggtgttcctatgagtgggaacttttggctacgacgctcaagcttctgattgcacaggtaagtgtgtgtttttttttattaaacaaaaattaagaaaaaagatactttaataatattaatgggcaccattgatccagggtaagtggttgagaattttgagatttcagatttaaaatttaatagtaataaaaaaaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="50152" stop="49168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49852" g_stop="49468" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E232732" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232732" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49852" e_stop="49468"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGAAAAATGGGCGTATGGTATTGACCATGTTGGGTAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAAGTAAGTGTGTGTCTTTTTTTATTAAAAAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGGTTTAAAATTTAATAGTAATAAAAAAAAATA</genome_strand>
        <mrna_strand>AATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGGAAAATGGGCGTATGGTATTGACCATGTTGGGCAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAGGTAAGTGTGTGTTTTTTTTTATTAAACAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGATTTAAAATTTAATAGTAATAAAAAAAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E232903" ref_strand="+" ref_description="SGN-E232903 [cLED-8-F4]">
      <seq>tcaaccccagcaagtgttcataaagcatattatgagcaattggagagagattttgtaacatttttaaagtatcgctcagaagaattgatggaaaatgggcgtatggtattgaccatgttgggcagaaaaaatgaagatcgcttcagccaagggtgttcctatgagtgggaacttttggctacgacgctcaagcttttgattgcacaggtaagtgtgtgtttttttttattaaacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="50114" stop="49278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="49815" g_stop="49579" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="237" r_length="237" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E232903" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="49815" e_stop="49579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGAAAAATGGGCGTATGGTATTGACCATGTTGGGTAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAAGTAAGTGTGTGTCTTTTTTTATTAAAAAAA</genome_strand>
        <mrna_strand>TCAACCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTGGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGGAAAATGGGCGTATGGTATTGACCATGTTGGGCAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTTTGATTGCACAGGTAAGTGTGTGTTTTTTTTTATTAAACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E270081" ref_strand="+" ref_description="SGN-E270081 [cLEM-7-O9]">
      <seq>taaagttcttcacatgaatggaggaatgggagatgctagctatgccaaaaattctctgcttcagcaaaaggtgatcctcatgacgaaatcaataacagatgaagccatatcttctctctacaacaacctttcctcaagagaaacgatatgcattgcggatttaggttgttcttctggaccaaacacttttttgtcagtctctcaattcattcaaactattgataaagaaagaaaaaagaagggacgtcataaggcgccggaatttcatgttttcttgaatgatcttcctagcaatgatttcaataccatttttcgattgctaccaacattccatcaaagtttgaggaagcaaaatatgggagaagatggatcattatttgatccttcaaattgctttgtgacaggagttgctggttcattttatactagactttttccttccaatagcctacactttgtccactcctcttatagtcttcattggctttctcaagttcccgatggaataaagaataataagggaaatatctatctaacaagtacaagcccagcaagtgttcataaagcatattatgagcaatttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="51214" stop="49471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50914" g_stop="50851" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50850" i_stop="50673" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50672" g_stop="50244" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="493" r_length="429" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="50243" i_stop="49864" i_length="380">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49863" g_stop="49771" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="494" r_stop="586" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E270081" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50914" e_stop="50851"/>
          <exon e_start="50672" e_stop="50244"/>
          <exon e_start="49863" e_stop="49771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAGGTACTATATATCACACACGCCACAAGAAAACTTATTTTTCAGCAAATTTTCATACTAATTTTCGGCGACAATGTTCTTATAGTAGTGACAGTTTTAGTTAAGATTTTGACCTACCACAATTGTTATGAACTCCAATGAGTTACGTAAATAACAATGTCCTTTTTTTGAATTGCTACAGCAAAAGGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCAAACTATTGATAAAGAAAGAAAAAAGAAGGGACGTCATAAGGCGCCGGAATTTCATGTTTTCTTGAATGATCTTCCTAGCAATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAGGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACAGGAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTTGTCCACTCCTCTTATAGTCTTCATTGGCTTTCTCAAGTATGTATCAATCTCTAATGCTAATATAATAATAGGAAGAAAGTCTTAAATATGTGTTATTTGTTAAAAATTAATCTCACTTAAGTCATTTTCATTTGAAAAAAATATTCATTTATGTCATTATTTAATTGAGTTTTTTTTACTTATTAAAAAAAATAATTACGTGCTATTGGCCACTAATGAAATTGAGTTTGCAAAATCAGAATAGTTTTCCGTTAACAAATAATGACACATATAATATGAATTTTTTTTCAAATGAAAATGACTTAGATGAGCCAAACTTATAACTTTTAACTGAAATACCATAAATAAGTCATTATTTATTGATTTAAATGATACATATGTTTCGATCTTTTAAATATCAGTTATTAATTGTATAGGTTCCCGATGGAATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAG</genome_strand>
        <mrna_strand>TAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAG..................................................................................................................................................................................CAAAAGGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCAAACTATTGATAAAGAAAGAAAAAAGAAGGGACGTCATAAGGCGCCGGAATTTCATGTTTTCTTGAATGATCTTCCTAGCAATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAGGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACAGGAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTTGTCCACTCCTCTTATAGTCTTCATTGGCTTTCTCAA............................................................................................................................................................................................................................................................................................................................................................................................GTTCCCGATGGAATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E215945" ref_strand="+" ref_description="SGN-E215945 [cLEL-13-B18](-)">
      <seq>ggatttaggttgttcttctggaccaaacacttttttgtcagtctctcaattcattctagctcttgataaagaaagaaaaaataaggttcgtcataagtcgccggaatttcatgttttcttgaatgatcttccctagcgatgatttcaataccatttttcgattgctaccaacattccatcaaagtttgaagaagcaaaatatgggagaagatggatcattatttgatccttcaaattgctttgtgacatcagttgctggttcattttatactagactttttccttccaatagcctacactttgtccactcctcttatagtcttcattggctttctcaagtatgtatcaatctctaatgctaatataataataggaagaaagtcttcaataaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="50880" stop="45123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50580" g_stop="50174" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E215945" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50580" e_stop="50174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCAAACTATTGATAAAGAAAGAAAAAAGAAGGGACGTCATAAGGCGCCGGAATTTCATGTTTTCTTGAATGATCTT-CCTAGCAATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAGGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACAGGAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTTGTCCACTCCTCTTATAGTCTTCATTGGCTTTCTCAAGTATGTATCAATCTCTAATGCTAATATAATAATAGGAAGAAAGTCTTAAATATGTGTTATTTGTTAAAAA</genome_strand>
        <mrna_strand>GGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCTAGCTCTTGATAAAGAAAGAAAAAATAAGGTTCGTCATAAGTCGCCGGAATTTCATGTTTTCTTGAATGATCTTCCCTAGCGATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAAGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACATCAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTTGTCCACTCCTCTTATAGTCTTCATTGGCTTTCTCAAGTATGTATCAATCTCTAATGCTAATATAATAATAGGAAGAAAGTCTTCAATAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312733" ref_strand="+" ref_description="SGN-E312733 [cTOA-8-C14]">
      <seq>gtcactaaagttcttcacatgaatggaggaatgggagatgctagctatgccaaaaattctctgcttcagcaaaaggtgatcctcatgacgaaatcaataacagatgaagccatatcttctctctacaacaacctttcctcaagagaaacgatatgcattgcggatttaggttgttcttctggaccaaacacttttttgtcagtctctcaattcattcaaactattgataaagaaagaaaaaagaagggacgtcataaggcgccggaatttcatgttttcttgaatgatcttcctagcaatgatttcaataccatttttcgattgctaccaacattccatcaaagtttgaggaagcaaaatatgggagaagatggatcattatttgatccttcaaattgctttgtgacaggagttgctggttcattttatactagactttttccttccaatagcctacacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="51219" stop="49980"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50919" g_stop="50851" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50850" i_stop="50673" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50672" g_stop="50280" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="462" r_length="393" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E312733" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312733" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50919" e_stop="50851"/>
          <exon e_start="50672" e_stop="50280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAGGTACTATATATCACACACGCCACAAGAAAACTTATTTTTCAGCAAATTTTCATACTAATTTTCGGCGACAATGTTCTTATAGTAGTGACAGTTTTAGTTAAGATTTTGACCTACCACAATTGTTATGAACTCCAATGAGTTACGTAAATAACAATGTCCTTTTTTTGAATTGCTACAGCAAAAGGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCAAACTATTGATAAAGAAAGAAAAAAGAAGGGACGTCATAAGGCGCCGGAATTTCATGTTTTCTTGAATGATCTTCCTAGCAATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAGGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACAGGAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTT</genome_strand>
        <mrna_strand>GTCACTAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAG..................................................................................................................................................................................CAAAAGGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCAAACTATTGATAAAGAAAGAAAAAAGAAGGGACGTCATAAGGCGCCGGAATTTCATGTTTTCTTGAATGATCTTCCTAGCAATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAGGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACAGGAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_E_tomato" ref_id="SGN-E312842" ref_strand="+" ref_description="SGN-E312842 [cTOA-8-C2]">
      <seq>gtcactaaagttcttcacatgaatggaggaatgggagatgctagctatgccaaaaattctctgcttcagcaaaaagtgatcctcatgacgaaatcaataacagatgaagccatatcttctctctacaacaacctttcctcaagagaaacgatatgcattgcggatttaggttgttcttctggaccaaacacttttttgtcaagtctctcaattcattcaaactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0046L21-SVCdM/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C04SLm0046L21.1" temp_strand="-" temp_description="C04SLm0046L21.1  CU928651.3 htgs_phase:3 submitted_to_sgn_as:C04SLm0046L21 sequenced_by:sanger upload_account_name:uk">
        <position start="51219" stop="50217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50919" g_stop="50851" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50850" i_stop="50673" i_length="178">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.974" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50672" g_stop="50517" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="226" r_length="157" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0046L21.1" gen_strand="-" ref_id="SGN-E312842" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0046L21.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50919" e_stop="50851"/>
          <exon e_start="50672" e_stop="50517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAGGTACTATATATCACACACGCCACAAGAAAACTTATTTTTCAGCAAATTTTCATACTAATTTTCGGCGACAATGTTCTTATAGTAGTGACAGTTTTAGTTAAGATTTTGACCTACCACAATTGTTATGAACTCCAATGAGTTACGTAAATAACAATGTCCTTTTTTTGAATTGCTACAGCAAAAGGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTC-AGTCTCTCAATTCATTCAAACTATT</genome_strand>
        <mrna_strand>GTCACTAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAG..................................................................................................................................................................................CAAAAAGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAAGTCTCTCAATTCATTCAAACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>19</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="8771" PGL_stop="11447"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="8771" e_stop="9135"/>
            <exon e_start="9688" e_stop="9781"/>
            <exon e_start="9872" e_stop="9977"/>
            <exon e_start="11137" e_stop="11219"/>
            <exon e_start="11338" e_stop="11447"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.958" e_score="1.000"/>
          <exon-intron don_prob="0.855" acc_prob="0.889" e_score="1.000"/>
          <exon-intron don_prob="0.295" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.921" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="8771" e_stop="9135" e_length="365"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.958">
            <gDNA_intron_boundary i_start="9136" i_stop="9687" i_length="552"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="9688" e_stop="9781" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.855" acc_prob="0.889">
            <gDNA_intron_boundary i_start="9782" i_stop="9871" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="9872" e_stop="9977" e_length="106"/>
          </exon>
          <intron i_serial="3" don_prob="0.295" acc_prob="0.000">
            <gDNA_intron_boundary i_start="9978" i_stop="11136" i_length="1159"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11137" e_stop="11219" e_length="83"/>
          </exon>
          <intron i_serial="4" don_prob="0.921" acc_prob="0.000">
            <gDNA_intron_boundary i_start="11220" i_stop="11337" i_length="118"/>
          </intron>
          <exon e_serial="5" e_score="0.982">
            <gDNA_exon_boundary e_start="11338" e_stop="11447" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="8771" stop="9135"/>
              <exon start="9688" stop="9781"/>
              <exon start="9872" stop="9977"/>
              <exon start="11137" stop="11219"/>
              <exon start="11338" stop="11447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316545" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTGGCGAAGAAAGCGAATGGAAGCTTAAATGGTGGGAACAGCATGACACCTTCGATCAACAAGTTGTCCTAAAAGTCTTACTCCCAGATATTCTATGAGGTTTTTGGAGGAGAGGAAGACTCTTCCCTTATGAAATTAAAAAGAGGAGTTCTCAAGCTGATGAATATCCAATCATTTGGCTATGCTGTCTCCGTCGCTGGCTGTCGTCACCAGGCAATCCGAATCATCTCTCCCTCACTCTCTCTCCATCTCTTCTCCCTCAGTTTTGATTTGTCTTTATTGTTGATGGCTCTCTTTCTGTCTTAGCTCTCAACCTTGCCTCTCATCAGTTTCAATAGTCGCGGGCTTACATACTCGAGATCAG : AAAATAACTGAGATGGATCACTCACATGGGCTCTTGTACTGGTAGATAACAGTATTATGTCCCCTGTACCATCCCATCCTTGACCTTGGAGCAG : ATATTGTGATGCATTCAGCAGCTAAGTCTATGTTTAGCCATAGTGATCTGATGGGGGCGTATTGTCATCATAGGAGAAAGGTTTTTCTTCTTTATATGGTTTCAAG : AAGGTGCAGTCCTACCCCCATTTGATTGCTGGCTTTGTTTAAGAAGCATTAAAATGATGGTGCTGCATGTAGAAAAACAATAG : CGTCTAGCTCTCAAGAGCCTGGTTGACATAAGCATGGAGTCATTACTCCTCTCACAGAGCAATTGACAAAGCCATTCTTCCATTAGCCAATGCCATGATTTGCATTACTC</gDNA_template>
            <first_frame> I  G  E  E  S  E  W  K  L  K  W  W  E  Q  H  D  T  F  D  Q  Q  V  V  L  K  V  L  L  P  D  I  L  *  G  F  W  R  R  G  R  L  F  P  Y  E  I  K  K  R  S  S  Q  A  D  E  Y  P  I  I  W  L  C  C  L  R  R  W  L  S  S  P  G  N  P  N  H  L  S  L  T  L  S  P  S  L  L  P  Q  F  *  F  V  F  I  V  D  G  S  L  S  V  L  A  L  N  L  A  S  H  Q  F  Q  *  S  R  A  Y  I  L  E  I  R :   K  *  L  R  W  I  T  H  M  G  S  C  T  G  R  *  Q  Y  Y  V  P  C  T  I  P  S  L  T  L  E  Q  :  I  L  *  C  I  Q  Q  L  S  L  C  L  A  I  V  I  *  W  G  R  I  V  I  I  G  E  R  F  F  F  F  I  W  F  Q   : E  G  A  V  L  P  P  F  D  C  W  L  C  L  R  S  I  K  M  M  V  L  H  V  E  K  Q  *  :  R  L  A  L  K  S  L  V  D  I  S  M  E  S  L  L  L  S  Q  S  N  *  Q  S  H  S  S  I  S  Q  C  H  D  L  H  Y   </first_frame>
            <second_frame>  L  A  K  K  A  N  G  S  L  N  G  G  N  S  M  T  P  S  I  N  K  L  S  *  K  S  Y  S  Q  I  F  Y  E  V  F  G  G  E  E  D  S  S  L  M  K  L  K  R  G  V  L  K  L  M  N  I  Q  S  F  G  Y  A  V  S  V  A  G  C  R  H  Q  A  I  R  I  I  S  P  S  L  S  L  H  L  F  S  L  S  F  D  L  S  L  L  L  M  A  L  F  L  S  *  L  S  T  L  P  L  I  S  F  N  S  R  G  L  T  Y  S  R  S   : E  N  N  *  D  G  S  L  T  W  A  L  V  L  V  D  N  S  I  M  S  P  V  P  S  H  P  *  P  W  S  R :   Y  C  D  A  F  S  S  *  V  Y  V  *  P  *  *  S  D  G  G  V  L  S  S  *  E  K  G  F  S  S  L  Y  G  F  K  :  K  V  Q  S  Y  P  H  L  I  A  G  F  V  *  E  A  L  K  *  W  C  C  M  *  K  N  N  S :   V  *  L  S  R  A  W  L  T  *  A  W  S  H  Y  S  S  H  R  A  I  D  K  A  I  L  P  L  A  N  A  M  I  C  I  T  </second_frame>
            <third_frame>   W  R  R  K  R  M  E  A  *  M  V  G  T  A  *  H  L  R  S  T  S  C  P  K  S  L  T  P  R  Y  S  M  R  F  L  E  E  R  K  T  L  P  L  *  N  *  K  E  E  F  S  S  *  *  I  S  N  H  L  A  M  L  S  P  S  L  A  V  V  T  R  Q  S  E  S  S  L  P  H  S  L  S  I  S  S  P  S  V  L  I  C  L  Y  C  *  W  L  S  F  C  L  S  S  Q  P  C  L  S  S  V  S  I  V  A  G  L  H  T  R  D  Q  :  K  I  T  E  M  D  H  S  H  G  L  L  Y  W  *  I  T  V  L  C  P  L  Y  H  P  I  L  D  L  G  A   : D  I  V  M  H  S  A  A  K  S  M  F  S  H  S  D  L  M  G  A  Y  C  H  H  R  R  K  V  F  L  L  Y  M  V  S  R :   R  C  S  P  T  P  I  *  L  L  A  L  F  K  K  H  *  N  D  G  A  A  C  R  K  T  I   : A  S  S  S  Q  E  P  G  *  H  K  H  G  V  I  T  P  L  T  E  Q  L  T  K  P  F  F  H  *  P  M  P  *  F  A  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0046L21.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="8844" stop="9077"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>231</number_coding_nucleotides>
                  <number_encoded_amino_acids>77</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KSYSQIFYEVFGGEEDSSLMKLKRGVLKLMNIQSFGYAVSVAGCRHQAIRIISPSLSLHLFSLSFDLSLLLMALFLS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="33346" PGL_stop="26822"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33346" e_stop="33306"/>
            <exon e_start="31239" e_stop="30970"/>
            <exon e_start="30809" e_stop="30713"/>
            <exon e_start="29523" e_stop="29415"/>
            <exon e_start="27053" e_stop="26822"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.888" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="0.978"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33346" e_stop="33306" e_length="41"/>
          </exon>
          <intron i_serial="1" don_prob="0.888" acc_prob="0.923">
            <gDNA_intron_boundary i_start="33305" i_stop="31240" i_length="2066"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31239" e_stop="30970" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.959">
            <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30809" e_stop="30713" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29523" e_stop="29415" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.922">
            <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="27053" e_stop="26822" e_length="232"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33346" stop="33306"/>
              <exon start="31239" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="29523" stop="29415"/>
              <exon start="27053" stop="26873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348878" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33343" stop="33306"/>
              <exon start="31239" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="29523" stop="29415"/>
              <exon start="27053" stop="26822"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352252" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33343" stop="33306"/>
              <exon start="31239" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="29523" stop="29415"/>
              <exon start="27053" stop="26855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33343" stop="33306"/>
              <exon start="31239" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="29523" stop="29415"/>
              <exon start="27053" stop="26952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354392" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31054" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="29523" stop="29415"/>
              <exon start="27053" stop="26855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGTTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAG : CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT : AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG : ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT : GTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATACAAGTTGGTTTCTAATTTAAGTTTCTTTTTTTTTTT</gDNA_template>
            <first_frame> L  F  G  L  W  K  W  R  *  I  R  A  K  S :   K  A  K  I  P  *  I  L  L  N  Y  L  T  K  E  P  K  V  L  F  V  N  H  I  W  I  C  *  T  *  R  L  K  F  Q  W  M  P  Y  Q  M  V  E  T  M  P  T  *  K  M  I  A  *  M  L  M  A  H  I  V  W  P  *  I  L  T  K  E  S  L  T  H  L  N  P  L  R  K  *  M  G  M  L  R  W  M  T  M  Y  L :   V  C  F  R  E  K  F  H  H  *  W  E  E  S  S  C  N  R  *  *  I  T  A  L  S  C  P  N  L  H  V  K  :  I  N  F  *  P  R  R  Y  M  I  H  L  A  T  D  *  E  N  T  S  A  L  H  L  S  I  Q  E  E  L  F  S  F  S  Q  S   : C  R  A  W  G  R  S  F  S  F  I  L  L  *  E  L  E  *  V  V  I  G  L  L  M  F  R  I  Y  F  S  S  I  V  C  E  M  S  S  L  S  C  L  Y  F  I  L  M  F  H  E  *  E  S  F  F  I  C  T  *  R  *  Q  L  V  Y  K  L  V  S  N  L  S  F  F  F  F   </first_frame>
            <second_frame>  C  L  V  C  G  N  G  G  E  F  E  P  R   : A  K  P  R  F  P  E  F  C  *  I  T  *  R  R  N  Q  R  S  S  L  *  I  T  F  G  Y  V  E  P  E  D  S  N  F  N  G  C  P  I  K  W  W  K  P  C  Q  P  E  K  *  *  L  R  C  L  W  L  I  L  F  G  H  R  Y  *  Q  K  K  V  *  R  T  *  I  H  *  G  N  E  W  E  C  *  D  G  *  L  C  I   : *  Y  V  S  E  R  N  F  I  T  D  G  R  K  V  H  A  T  D  D  E  *  Q  L  *  V  A  Q  I  C  M  *  R :   *  I  F  D  R  E  G  I  *  Y  T  *  Q  Q  I  E  K  I  Q  A  L  C  I  F  Q  F  K  K  S  C  S  P  F  L  S  H  :  V  V  H  G  D  D  R  S  H  L  S  Y  S  K  S  *  N  E  W  *  L  G  C  *  C  L  E  S  T  S  R  P  S  F  V  K  *  V  L  F  L  A  C  I  L  S  *  C  F  M  S  R  N  R  S  S  S  V  H  K  D  S  S  *  Y  T  S  W  F  L  I  *  V  S  F  F  F  </second_frame>
            <third_frame>   V  W  F  V  E  M  A  V  N  S  S  Q  E  :  Q  S  Q  D  S  L  N  F  V  K  L  P  D  E  G  T  K  G  P  L  C  E  S  H  L  D  M  L  N  L  K  T  Q  I  S  M  D  A  L  S  N  G  G  N  H  A  N  L  K  N  D  S  L  D  A  Y  G  S  Y  C  L  A  I  D  I  D  K  R  K  F  D  A  P  K  S  T  E  E  M  N  G  N  V  K  M  D  D  Y  V  S  :  S  M  F  Q  R  E  I  S  S  L  M  G  G  K  F  M  Q  Q  M  M  N  N  S  F  E  L  P  K  F  A  C  K   : D  K  F  L  T  E  K  V  Y  D  T  P  S  N  R  L  R  K  Y  K  R  S  A  S  F  N  S  R  R  V  V  L  L  F  S  V  M :   S  C  M  G  T  I  V  L  I  Y  L  T  L  R  V  R  M  S  G  D  W  A  A  N  V  *  N  L  L  L  V  H  R  L  *  N  E  F  S  F  L  L  V  F  Y  L  N  V  S  *  V  G  I  V  L  H  L  Y  I  K  I  A  V  S  I  Q  V  G  F  *  F  K  F  L  F  F  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0046L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33344" stop="33306"/>
                    <exon start="31239" stop="30970"/>
                    <exon start="30809" stop="30713"/>
                    <exon start="29523" stop="29415"/>
                    <exon start="27053" stop="26975"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>591</number_coding_nucleotides>
                  <number_encoded_amino_acids>197</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VWFVEMAVNSSQEQSQDSLNFVKLPDEGTKGPLCESHLDMLNLKTQISMDALSNGGNHANLKNDSLDAYGSYCLAIDIDKRKFDAPKSTEEMNGNVKMDDYVSSMFQREISSLMGGKFMQQMMNNSFELPKFACKDKFLTEKVYDTPSNRLRKYKRSASFNSRRVVLLFSVMSCMGTIVLIYLTLRVRMSGDWAANV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="33322" e_stop="33301"/>
            <exon e_start="31239" e_stop="30970"/>
            <exon e_start="30809" e_stop="30713"/>
            <exon e_start="29523" e_stop="29415"/>
            <exon e_start="27053" e_stop="26855"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.959" e_score="0.993"/>
          <exon-intron don_prob="0.950" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.922" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33322" e_stop="33301" e_length="22"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.923">
            <gDNA_intron_boundary i_start="33300" i_stop="31240" i_length="2061"/>
          </intron>
          <exon e_serial="2" e_score="0.993">
            <gDNA_exon_boundary e_start="31239" e_stop="30970" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.959">
            <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30809" e_stop="30713" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30712" i_stop="29524" i_length="1189"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="29523" e_stop="29415" e_length="109"/>
          </exon>
          <intron i_serial="4" don_prob="0.995" acc_prob="0.922">
            <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361"/>
          </intron>
          <exon e_serial="5" e_score="0.995">
            <gDNA_exon_boundary e_start="27053" e_stop="26855" e_length="199"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33322" stop="33301"/>
              <exon start="31239" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="29523" stop="29447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31054" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="29523" stop="29415"/>
              <exon start="27053" stop="26855"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554997" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAATTCGAGCCAAGAGGTGAG : CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT : AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG : ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT : GTCGTGCATGGGGACGATCGTTCTCATTTATCTTACTCTAAGAGTTAGAATGAGTGGTGATTGGGCTGCTAATGTTTAGAATCTACTTCTCGTCCATCGTTTGTGAAATGAGTTCTCTTTCTTGCTTGTATTTTATCTTAATGTTTCATGAGTAGGAATCGTTCTTCATCTGTACATAAAGATAGCAGTTAGTATACAA</gDNA_template>
            <first_frame> *  I  R  A  K  R  *   : A  K  P  R  F  P  E  F  C  *  I  T  *  R  R  N  Q  R  S  S  L  *  I  T  F  G  Y  V  E  P  E  D  S  N  F  N  G  C  P  I  K  W  W  K  P  C  Q  P  E  K  *  *  L  R  C  L  W  L  I  L  F  G  H  R  Y  *  Q  K  K  V  *  R  T  *  I  H  *  G  N  E  W  E  C  *  D  G  *  L  C  I   : *  Y  V  S  E  R  N  F  I  T  D  G  R  K  V  H  A  T  D  D  E  *  Q  L  *  V  A  Q  I  C  M  *  R :   *  I  F  D  R  E  G  I  *  Y  T  *  Q  Q  I  E  K  I  Q  A  L  C  I  F  Q  F  K  K  S  C  S  P  F  L  S  H  :  V  V  H  G  D  D  R  S  H  L  S  Y  S  K  S  *  N  E  W  *  L  G  C  *  C  L  E  S  T  S  R  P  S  F  V  K  *  V  L  F  L  A  C  I  L  S  *  C  F  M  S  R  N  R  S  S  S  V  H  K  D  S  S  *  Y  T  </first_frame>
            <second_frame>  E  F  E  P  R  G  E  :  Q  S  Q  D  S  L  N  F  V  K  L  P  D  E  G  T  K  G  P  L  C  E  S  H  L  D  M  L  N  L  K  T  Q  I  S  M  D  A  L  S  N  G  G  N  H  A  N  L  K  N  D  S  L  D  A  Y  G  S  Y  C  L  A  I  D  I  D  K  R  K  F  D  A  P  K  S  T  E  E  M  N  G  N  V  K  M  D  D  Y  V  S  :  S  M  F  Q  R  E  I  S  S  L  M  G  G  K  F  M  Q  Q  M  M  N  N  S  F  E  L  P  K  F  A  C  K   : D  K  F  L  T  E  K  V  Y  D  T  P  S  N  R  L  R  K  Y  K  R  S  A  S  F  N  S  R  R  V  V  L  L  F  S  V  M :   S  C  M  G  T  I  V  L  I  Y  L  T  L  R  V  R  M  S  G  D  W  A  A  N  V  *  N  L  L  L  V  H  R  L  *  N  E  F  S  F  L  L  V  F  Y  L  N  V  S  *  V  G  I  V  L  H  L  Y  I  K  I  A  V  S  I  Q </second_frame>
            <third_frame>   N  S  S  Q  E  V  S :   K  A  K  I  P  *  I  L  L  N  Y  L  T  K  E  P  K  V  L  F  V  N  H  I  W  I  C  *  T  *  R  L  K  F  Q  W  M  P  Y  Q  M  V  E  T  M  P  T  *  K  M  I  A  *  M  L  M  A  H  I  V  W  P  *  I  L  T  K  E  S  L  T  H  L  N  P  L  R  K  *  M  G  M  L  R  W  M  T  M  Y  L :   V  C  F  R  E  K  F  H  H  *  W  E  E  S  S  C  N  R  *  *  I  T  A  L  S  C  P  N  L  H  V  K  :  I  N  F  *  P  R  R  Y  M  I  H  L  A  T  D  *  E  N  T  S  A  L  H  L  S  I  Q  E  E  L  F  S  F  S  Q  S   : C  R  A  W  G  R  S  F  S  F  I  L  L  *  E  L  E  *  V  V  I  G  L  L  M  F  R  I  Y  F  S  S  I  V  C  E  M  S  S  L  S  C  L  Y  F  I  L  M  F  H  E  *  E  S  F  F  I  C  T  *  R  *  Q  L  V  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0046L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33321" stop="33301"/>
                    <exon start="31239" stop="30970"/>
                    <exon start="30809" stop="30713"/>
                    <exon start="29523" stop="29415"/>
                    <exon start="27053" stop="26975"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>573</number_coding_nucleotides>
                  <number_encoded_amino_acids>191</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFEPRGEQSQDSLNFVKLPDEGTKGPLCESHLDMLNLKTQISMDALSNGGNHANLKNDSLDAYGSYCLAIDIDKRKFDAPKSTEEMNGNVKMDDYVSSMFQREISSLMGGKFMQQMMNNSFELPKFACKDKFLTEKVYDTPSNRLRKYKRSASFNSRRVVLLFSVMSCMGTIVLIYLTLRVRMSGDWAANV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="33343" e_stop="33301"/>
            <exon e_start="31239" e_stop="30970"/>
            <exon e_start="30809" e_stop="30713"/>
            <exon e_start="30460" e_stop="30343"/>
            <exon e_start="29523" e_stop="29415"/>
            <exon e_start="27053" e_stop="27018"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.902" acc_prob="0.923" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.959" e_score="1.000"/>
          <exon-intron don_prob="0.950" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.939" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.922" e_score="0.991"/>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="33343" e_stop="33301" e_length="43"/>
          </exon>
          <intron i_serial="1" don_prob="0.902" acc_prob="0.923">
            <gDNA_intron_boundary i_start="33300" i_stop="31240" i_length="2061"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="31239" e_stop="30970" e_length="270"/>
          </exon>
          <intron i_serial="2" don_prob="0.977" acc_prob="0.959">
            <gDNA_intron_boundary i_start="30969" i_stop="30810" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="30809" e_stop="30713" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.950" acc_prob="0.989">
            <gDNA_intron_boundary i_start="30712" i_stop="30461" i_length="252"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="30460" e_stop="30343" e_length="118"/>
          </exon>
          <intron i_serial="4" don_prob="0.939" acc_prob="0.994">
            <gDNA_intron_boundary i_start="30342" i_stop="29524" i_length="819"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="29523" e_stop="29415" e_length="109"/>
          </exon>
          <intron i_serial="5" don_prob="0.995" acc_prob="0.922">
            <gDNA_intron_boundary i_start="29414" i_stop="27054" i_length="2361"/>
          </intron>
          <exon e_serial="6" e_score="0.944">
            <gDNA_exon_boundary e_start="27053" e_stop="27018" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33343" stop="33301"/>
              <exon start="31239" stop="30970"/>
              <exon start="30809" stop="30713"/>
              <exon start="30460" stop="30343"/>
              <exon start="29523" stop="29415"/>
              <exon start="27053" stop="27018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342154" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGGTTTGTGGAAATGGCGGTGAATTCGAGCCAAGAGGTGAG : CAAAGCCAAGATTCCCTGAATTTTGTTAAATTACCTGACGAAGGAACCAAAGGTCCTCTTTGTGAATCACATTTGGATATGTTGAACCTGAAGACTCAAATTTCAATGGATGCCCTATCAAATGGTGGAAACCATGCCAACCTGAAAAATGATAGCTTAGATGCTTATGGCTCATATTGTTTGGCCATAGATATTGACAAAAGAAAGTTTGACGCACCTAAATCCACTGAGGAAATGAATGGGAATGTTAAGATGGATGACTATGTATCT : AGTATGTTTCAGAGAGAAATTTCATCACTGATGGGAGGAAAGTTCATGCAACAGATGATGAATAACAGCTTTGAGTTGCCCAAATTTGCATGTAAAG : GGAAGGATGACAGATCTGGTTGGTCTTTGGTGAAATAACCAAGACATGTAACAGTCTTCGATGCTCATGATGCTAGTTAAGAAAGTAGAAGAATTCTCTAAGAATCAATGCATTCTCG : ATAAATTTTTGACCGAGAAGGTATATGATACACCTAGCAACAGATTGAGAAAATACAAGCGCTCTGCATCTTTCAATTCAAGAAGAGTTGTTCTCCTTTTCTCAGTCAT : GTCGTGCATGGGGACGATCGTTCTCATTTATCTTAC</gDNA_template>
            <first_frame> F  G  L  W  K  W  R  *  I  R  A  K  R  *   : A  K  P  R  F  P  E  F  C  *  I  T  *  R  R  N  Q  R  S  S  L  *  I  T  F  G  Y  V  E  P  E  D  S  N  F  N  G  C  P  I  K  W  W  K  P  C  Q  P  E  K  *  *  L  R  C  L  W  L  I  L  F  G  H  R  Y  *  Q  K  K  V  *  R  T  *  I  H  *  G  N  E  W  E  C  *  D  G  *  L  C  I   : *  Y  V  S  E  R  N  F  I  T  D  G  R  K  V  H  A  T  D  D  E  *  Q  L  *  V  A  Q  I  C  M  *  R :   E  G  *  Q  I  W  L  V  F  G  E  I  T  K  T  C  N  S  L  R  C  S  *  C  *  L  R  K  *  K  N  S  L  R  I  N  A  F  S  :  I  N  F  *  P  R  R  Y  M  I  H  L  A  T  D  *  E  N  T  S  A  L  H  L  S  I  Q  E  E  L  F  S  F  S  Q  S   : C  R  A  W  G  R  S  F  S  F  I  L  </first_frame>
            <second_frame>  L  V  C  G  N  G  G  E  F  E  P  R  G  E  :  Q  S  Q  D  S  L  N  F  V  K  L  P  D  E  G  T  K  G  P  L  C  E  S  H  L  D  M  L  N  L  K  T  Q  I  S  M  D  A  L  S  N  G  G  N  H  A  N  L  K  N  D  S  L  D  A  Y  G  S  Y  C  L  A  I  D  I  D  K  R  K  F  D  A  P  K  S  T  E  E  M  N  G  N  V  K  M  D  D  Y  V  S  :  S  M  F  Q  R  E  I  S  S  L  M  G  G  K  F  M  Q  Q  M  M  N  N  S  F  E  L  P  K  F  A  C  K   : G  K  D  D  R  S  G  W  S  L  V  K  *  P  R  H  V  T  V  F  D  A  H  D  A  S  *  E  S  R  R  I  L  *  E  S  M  H  S  R :   *  I  F  D  R  E  G  I  *  Y  T  *  Q  Q  I  E  K  I  Q  A  L  C  I  F  Q  F  K  K  S  C  S  P  F  L  S  H  :  V  V  H  G  D  D  R  S  H  L  S  Y </second_frame>
            <third_frame>   W  F  V  E  M  A  V  N  S  S  Q  E  V  S :   K  A  K  I  P  *  I  L  L  N  Y  L  T  K  E  P  K  V  L  F  V  N  H  I  W  I  C  *  T  *  R  L  K  F  Q  W  M  P  Y  Q  M  V  E  T  M  P  T  *  K  M  I  A  *  M  L  M  A  H  I  V  W  P  *  I  L  T  K  E  S  L  T  H  L  N  P  L  R  K  *  M  G  M  L  R  W  M  T  M  Y  L :   V  C  F  R  E  K  F  H  H  *  W  E  E  S  S  C  N  R  *  *  I  T  A  L  S  C  P  N  L  H  V  K  :  G  R  M  T  D  L  V  G  L  W  *  N  N  Q  D  M  *  Q  S  S  M  L  M  M  L  V  K  K  V  E  E  F  S  K  N  Q  C  I  L   : D  K  F  L  T  E  K  V  Y  D  T  P  S  N  R  L  R  K  Y  K  R  S  A  S  F  N  S  R  R  V  V  L  L  F  S  V  M :   S  C  M  G  T  I  V  L  I  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0046L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33342" stop="33301"/>
                    <exon start="31239" stop="30970"/>
                    <exon start="30809" stop="30713"/>
                    <exon start="30460" stop="30423"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LVCGNGGEFEPRGEQSQDSLNFVKLPDEGTKGPLCESHLDMLNLKTQISMDALSNGGNHANLKNDSLDAYGSYCLAIDIDKRKFDAPKSTEEMNGNVKMDDYVSSMFQREISSLMGGKFMQQMMNNSFELPKFACKGKDDRSGWSLVK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0046L21.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="30409" stop="30343"/>
                    <exon start="29523" stop="29415"/>
                    <exon start="27053" stop="27020"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>210</number_coding_nucleotides>
                  <number_encoded_amino_acids>70</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QSSMLMMLVKKVEEFSKNQCILDKFLTEKVYDTPSNRLRKYKRSASFNSRRVVLLFSVMSCMGTIVLIYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="47469" PGL_stop="58214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="47469" e_stop="47515"/>
            <exon e_start="47968" e_stop="48033"/>
            <exon e_start="52265" e_stop="52288"/>
            <exon e_start="54995" e_stop="55007"/>
            <exon e_start="57840" e_stop="58214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.660"/>
          <exon-intron don_prob="0.000" acc_prob="0.597" e_score="0.848"/>
          <exon-intron don_prob="0.000" acc_prob="0.987" e_score="0.708"/>
          <exon-intron don_prob="0.000" acc_prob="0.939" e_score="0.769"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.660">
            <gDNA_exon_boundary e_start="47469" e_stop="47515" e_length="47"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="47516" i_stop="47967" i_length="452"/>
          </intron>
          <exon e_serial="2" e_score="0.848">
            <gDNA_exon_boundary e_start="47968" e_stop="48033" e_length="66"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.597">
            <gDNA_intron_boundary i_start="48034" i_stop="52264" i_length="4231"/>
          </intron>
          <exon e_serial="3" e_score="0.708">
            <gDNA_exon_boundary e_start="52265" e_stop="52288" e_length="24"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.987">
            <gDNA_intron_boundary i_start="52289" i_stop="54994" i_length="2706"/>
          </intron>
          <exon e_serial="4" e_score="0.769">
            <gDNA_exon_boundary e_start="54995" e_stop="55007" e_length="13"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.939">
            <gDNA_intron_boundary i_start="55008" i_stop="57839" i_length="2832"/>
          </intron>
          <exon e_serial="5" e_score="0.925">
            <gDNA_exon_boundary e_start="57840" e_stop="58214" e_length="375"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="47469" stop="47515"/>
              <exon start="47968" stop="48033"/>
              <exon start="52265" stop="52288"/>
              <exon start="54995" stop="55007"/>
              <exon start="57840" stop="58214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377351" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTTAATTTTATTTATTATTGAGTTATCGATTTTTAACGGTTTAAA : ATAGAAATATTACATTATCATAATATCTCTATGAGATATAAGATTATTATTACAATATCACAAGGG : AATAAAATTATATAATAACAAAAG : AATAAATAAAAGA : GGTCGGGATATATATTACTAGGGCCAGGGTTCGTGACGATGCACGAATTGCATGCCCTAGCTAATTTATTTTGGTCAACGAAACAATGACATTTACGAACATAATTTTTTCTATCGCCTTGCGATCATTGGCAATTACTTGGTTATACTTGTGGAAAATTTGATCCATATTCAATTTATCATGACCAAAAATGGCTAACAAGTAAAGGTTCAGCCACAGATCTAAAGCTTTTTGCCATATCGTATTTCTCGTTATCACAAGAATTCCTTTGAATTTCTAAAGTTTTCAAGATATCAATAGTGAAAGATCTCTCCTTTTCAACTATATACATCACTTCTGATGGAGATGGATTGTATAAAGGAATATTGAATGAAT</gDNA_template>
            <first_frame> V  L  I  L  F  I  I  E  L  S  I  F  N  G  L  K :   *  K  Y  Y  I  I  I  I  S  L  *  D  I  R  L  L  L  Q  Y  H  K  G :   I  K  L  Y  N  N  K  R :   I  N  K  R  :  G  R  D  I  Y  Y  *  G  Q  G  S  *  R  C  T  N  C  M  P  *  L  I  Y  F  G  Q  R  N  N  D  I  Y  E  H  N  F  F  Y  R  L  A  I  I  G  N  Y  L  V  I  L  V  E  N  L  I  H  I  Q  F  I  M  T  K  N  G  *  Q  V  K  V  Q  P  Q  I  *  S  F  L  P  Y  R  I  S  R  Y  H  K  N  S  F  E  F  L  K  F  S  R  Y  Q  *  *  K  I  S  P  F  Q  L  Y  T  S  L  L  M  E  M  D  C  I  K  E  Y  *  M  N </first_frame>
            <second_frame>  F  *  F  Y  L  L  L  S  Y  R  F  L  T  V  *   : N  R  N  I  T  L  S  *  Y  L  Y  E  I  *  D  Y  Y  Y  N  I  T  R   : E  *  N  Y  I  I  T  K   : E  *  I  K  E :   V  G  I  Y  I  T  R  A  R  V  R  D  D  A  R  I  A  C  P  S  *  F  I  L  V  N  E  T  M  T  F  T  N  I  I  F  S  I  A  L  R  S  L  A  I  T  W  L  Y  L  W  K  I  *  S  I  F  N  L  S  *  P  K  M  A  N  K  *  R  F  S  H  R  S  K  A  F  C  H  I  V  F  L  V  I  T  R  I  P  L  N  F  *  S  F  Q  D  I  N  S  E  R  S  L  L  F  N  Y  I  H  H  F  *  W  R  W  I  V  *  R  N  I  E  *   </second_frame>
            <third_frame>   F  N  F  I  Y  Y  *  V  I  D  F  *  R  F  K  :  I  E  I  L  H  Y  H  N  I  S  M  R  Y  K  I  I  I  T  I  S  Q  G  :  N  K  I  I  *  *  Q  K  :  N  K  *  K   : R  S  G  Y  I  L  L  G  P  G  F  V  T  M  H  E  L  H  A  L  A  N  L  F  W  S  T  K  Q  *  H  L  R  T  *  F  F  L  S  P  C  D  H  W  Q  L  L  G  Y  T  C  G  K  F  D  P  Y  S  I  Y  H  D  Q  K  W  L  T  S  K  G  S  A  T  D  L  K  L  F  A  I  S  Y  F  S  L  S  Q  E  F  L  *  I  S  K  V  F  K  I  S  I  V  K  D  L  S  F  S  T  I  Y  I  T  S  D  G  D  G  L  Y  K  G  I  L  N  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0046L21.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="50919" PGL_stop="49260"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50919" e_stop="50851"/>
            <exon e_start="50672" e_stop="50244"/>
            <exon e_start="49863" e_stop="49260"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-intron don_prob="0.989" acc_prob="0.951" e_score="1.000"/>
          <exon-only e_score="0.985"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50919" e_stop="50851" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="50850" i_stop="50673" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50672" e_stop="50244" e_length="429"/>
          </exon>
          <intron i_serial="2" don_prob="0.989" acc_prob="0.951">
            <gDNA_intron_boundary i_start="50243" i_stop="49864" i_length="380"/>
          </intron>
          <exon e_serial="3" e_score="0.985">
            <gDNA_exon_boundary e_start="49863" e_stop="49260" e_length="604"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50919" stop="50851"/>
              <exon start="50672" stop="50280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50919" stop="50851"/>
              <exon start="50672" stop="50517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50914" stop="50851"/>
              <exon start="50672" stop="50244"/>
              <exon start="49863" stop="49771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270081" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49852" stop="49260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236385" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49852" stop="49365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232784" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49852" stop="49402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E236346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49852" stop="49437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49852" stop="49468"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232732" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="49815" stop="49579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232903" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACTAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAG : CAAAAGGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCAAACTATTGATAAAGAAAGAAAAAAGAAGGGACGTCATAAGGCGCCGGAATTTCATGTTTTCTTGAATGATCTTCCTAGCAATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAGGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACAGGAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTTGTCCACTCCTCTTATAGTCTTCATTGGCTTTCTCAA : GTTCCCGATGGAATAAAGAATAATAAGGGAAATATCTATCTAACAAGTACAAGCCCAGCAAGTGTTCATAAAGCATATTATGAGCAATTTGAGAGAGATTTTGTAACATTTTTAAAGTATCGCTCAGAAGAATTGATGAAAAATGGGCGTATGGTATTGACCATGTTGGGTAGAAAAAATGAAGATCGCTTCAGCCAAGGGTGTTCCTATGAGTGGGAACTTTTGGCTACGACGCTCAAGCTTCTGATTGCACAAGTAAGTGTGTGTCTTTTTTTATTAAAAAAAAATTAAGAAAAAAGATACTTTAATAATATTAATGGGCACCATTGATCCAGGGTAAGTGGTTGAGAATTTTGAGATTTCAGGTTTAAAATTTAATAGTAATAAAAAAAAATATTGGGTGATTCTTTCTATTTGTTCTAACTTTGGTGGACGGGGTTATATCATATTTGTTGATGGTAGGAGTTGACAGGTATCACATATAGTTAATCGAGGTGCACGAGTAGGAGGTGACATGTATTTCATAAAATTAATCGAGATCAATGAAATTAGTCCGGACACCACAATCATCTTTATGAAGCTAGTTACTTGGTATATGTTTGGC</gDNA_template>
            <first_frame> V  T  K  V  L  H  M  N  G  G  M  G  D  A  S  Y  A  K  N  S  L  L  Q  :  Q  K  V  I  L  M  T  K  S  I  T  D  E  A  I  S  S  L  Y  N  N  L  S  S  R  E  T  I  C  I  A  D  L  G  C  S  S  G  P  N  T  F  L  S  V  S  Q  F  I  Q  T  I  D  K  E  R  K  K  K  G  R  H  K  A  P  E  F  H  V  F  L  N  D  L  P  S  N  D  F  N  T  I  F  R  L  L  P  T  F  H  Q  S  L  R  K  Q  N  M  G  E  D  G  S  L  F  D  P  S  N  C  F  V  T  G  V  A  G  S  F  Y  T  R  L  F  P  S  N  S  L  H  F  V  H  S  S  Y  S  L  H  W  L  S  Q  :  V  P  D  G  I  K  N  N  K  G  N  I  Y  L  T  S  T  S  P  A  S  V  H  K  A  Y  Y  E  Q  F  E  R  D  F  V  T  F  L  K  Y  R  S  E  E  L  M  K  N  G  R  M  V  L  T  M  L  G  R  K  N  E  D  R  F  S  Q  G  C  S  Y  E  W  E  L  L  A  T  T  L  K  L  L  I  A  Q  V  S  V  C  L  F  L  L  K  K  N  *  E  K  R  Y  F  N  N  I  N  G  H  H  *  S  R  V  S  G  *  E  F  *  D  F  R  F  K  I  *  *  *  *  K  K  I  L  G  D  S  F  Y  L  F  *  L  W  W  T  G  L  Y  H  I  C  *  W  *  E  L  T  G  I  T  Y  S  *  S  R  C  T  S  R  R  *  H  V  F  H  K  I  N  R  D  Q  *  N  *  S  G  H  H  N  H  L  Y  E  A  S  Y  L  V  Y  V  W  </first_frame>
            <second_frame>  S  L  K  F  F  T  *  M  E  E  W  E  M  L  A  M  P  K  I  L  C  F  S :   K  R  *  S  S  *  R  N  Q  *  Q  M  K  P  Y  L  L  S  T  T  T  F  P  Q  E  K  R  Y  A  L  R  I  *  V  V  L  L  D  Q  T  L  F  C  Q  S  L  N  S  F  K  L  L  I  K  K  E  K  R  R  D  V  I  R  R  R  N  F  M  F  S  *  M  I  F  L  A  M  I  S  I  P  F  F  D  C  Y  Q  H  S  I  K  V  *  G  S  K  I  W  E  K  M  D  H  Y  L  I  L  Q  I  A  L  *  Q  E  L  L  V  H  F  I  L  D  F  F  L  P  I  A  Y  T  L  S  T  P  L  I  V  F  I  G  F  L  K :   F  P  M  E  *  R  I  I  R  E  I  S  I  *  Q  V  Q  A  Q  Q  V  F  I  K  H  I  M  S  N  L  R  E  I  L  *  H  F  *  S  I  A  Q  K  N  *  *  K  M  G  V  W  Y  *  P  C  W  V  E  K  M  K  I  A  S  A  K  G  V  P  M  S  G  N  F  W  L  R  R  S  S  F  *  L  H  K  *  V  C  V  F  F  Y  *  K  K  I  K  K  K  D  T  L  I  I  L  M  G  T  I  D  P  G  *  V  V  E  N  F  E  I  S  G  L  K  F  N  S  N  K  K  K  Y  W  V  I  L  S  I  C  S  N  F  G  G  R  G  Y  I  I  F  V  D  G  R  S  *  Q  V  S  H  I  V  N  R  G  A  R  V  G  G  D  M  Y  F  I  K  L  I  E  I  N  E  I  S  P  D  T  T  I  I  F  M  K  L  V  T  W  Y  M  F  G </second_frame>
            <third_frame>   H  *  S  S  S  H  E  W  R  N  G  R  C  *  L  C  Q  K  F  S  A  S   : A  K  G  D  P  H  D  E  I  N  N  R  *  S  H  I  F  S  L  Q  Q  P  F  L  K  R  N  D  M  H  C  G  F  R  L  F  F  W  T  K  H  F  F  V  S  L  S  I  H  S  N  Y  *  *  R  K  K  K  E  G  T  S  *  G  A  G  I  S  C  F  L  E  *  S  S  *  Q  *  F  Q  Y  H  F  S  I  A  T  N  I  P  S  K  F  E  E  A  K  Y  G  R  R  W  I  I  I  *  S  F  K  L  L  C  D  R  S  C  W  F  I  L  Y  *  T  F  S  F  Q  *  P  T  L  C  P  L  L  L  *  S  S  L  A  F  S   : S  S  R  W  N  K  E  *  *  G  K  Y  L  S  N  K  Y  K  P  S  K  C  S  *  S  I  L  *  A  I  *  E  R  F  C  N  I  F  K  V  S  L  R  R  I  D  E  K  W  A  Y  G  I  D  H  V  G  *  K  K  *  R  S  L  Q  P  R  V  F  L  *  V  G  T  F  G  Y  D  A  Q  A  S  D  C  T  S  K  C  V  S  F  F  I  K  K  K  L  R  K  K  I  L  *  *  Y  *  W  A  P  L  I  Q  G  K  W  L  R  I  L  R  F  Q  V  *  N  L  I  V  I  K  K  N  I  G  *  F  F  L  F  V  L  T  L  V  D  G  V  I  S  Y  L  L  M  V  G  V  D  R  Y  H  I  *  L  I  E  V  H  E  *  E  V  T  C  I  S  *  N  *  S  R  S  M  K  L  V  R  T  P  Q  S  S  L  *  S  *  L  L  G  I  C  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0046L21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50919" stop="50851"/>
                    <exon start="50672" stop="50244"/>
                    <exon start="49863" stop="49573"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>786</number_coding_nucleotides>
                  <number_encoded_amino_acids>262</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTKVLHMNGGMGDASYAKNSLLQQKVILMTKSITDEAISSLYNNLSSRETICIADLGCSSGPNTFLSVSQFIQTIDKERKKKGRHKAPEFHVFLNDLPSNDFNTIFRLLPTFHQSLRKQNMGEDGSLFDPSNCFVTGVAGSFYTRLFPSNSLHFVHSSYSLHWLSQVPDGIKNNKGNIYLTSTSPASVHKAYYEQFERDFVTFLKYRSEELMKNGRMVLTMLGRKNEDRFSQGCSYEWELLATTLKLLIAQVSVCLFLLKKN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="50919" e_stop="50851"/>
            <exon e_start="50672" e_stop="50174"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.974" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="50919" e_stop="50851" e_length="69"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.974">
            <gDNA_intron_boundary i_start="50850" i_stop="50673" i_length="178"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50672" e_stop="50174" e_length="499"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50919" stop="50851"/>
              <exon start="50672" stop="50280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312733" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50919" stop="50851"/>
              <exon start="50672" stop="50517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50580" stop="50174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215945" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACTAAAGTTCTTCACATGAATGGAGGAATGGGAGATGCTAGCTATGCCAAAAATTCTCTGCTTCAG : CAAAAGGTGATCCTCATGACGAAATCAATAACAGATGAAGCCATATCTTCTCTCTACAACAACCTTTCCTCAAGAGAAACGATATGCATTGCGGATTTAGGTTGTTCTTCTGGACCAAACACTTTTTTGTCAGTCTCTCAATTCATTCAAACTATTGATAAAGAAAGAAAAAAGAAGGGACGTCATAAGGCGCCGGAATTTCATGTTTTCTTGAATGATCTTCCTAGCAATGATTTCAATACCATTTTTCGATTGCTACCAACATTCCATCAAAGTTTGAGGAAGCAAAATATGGGAGAAGATGGATCATTATTTGATCCTTCAAATTGCTTTGTGACAGGAGTTGCTGGTTCATTTTATACTAGACTTTTTCCTTCCAATAGCCTACACTTTGTCCACTCCTCTTATAGTCTTCATTGGCTTTCTCAAGTATGTATCAATCTCTAATGCTAATATAATAATAGGAAGAAAGTCTTAAATATGTGTTATTTGTTAAAAA</gDNA_template>
            <first_frame> V  T  K  V  L  H  M  N  G  G  M  G  D  A  S  Y  A  K  N  S  L  L  Q  :  Q  K  V  I  L  M  T  K  S  I  T  D  E  A  I  S  S  L  Y  N  N  L  S  S  R  E  T  I  C  I  A  D  L  G  C  S  S  G  P  N  T  F  L  S  V  S  Q  F  I  Q  T  I  D  K  E  R  K  K  K  G  R  H  K  A  P  E  F  H  V  F  L  N  D  L  P  S  N  D  F  N  T  I  F  R  L  L  P  T  F  H  Q  S  L  R  K  Q  N  M  G  E  D  G  S  L  F  D  P  S  N  C  F  V  T  G  V  A  G  S  F  Y  T  R  L  F  P  S  N  S  L  H  F  V  H  S  S  Y  S  L  H  W  L  S  Q  V  C  I  N  L  *  C  *  Y  N  N  R  K  K  V  L  N  M  C  Y  L  L  K  </first_frame>
            <second_frame>  S  L  K  F  F  T  *  M  E  E  W  E  M  L  A  M  P  K  I  L  C  F  S :   K  R  *  S  S  *  R  N  Q  *  Q  M  K  P  Y  L  L  S  T  T  T  F  P  Q  E  K  R  Y  A  L  R  I  *  V  V  L  L  D  Q  T  L  F  C  Q  S  L  N  S  F  K  L  L  I  K  K  E  K  R  R  D  V  I  R  R  R  N  F  M  F  S  *  M  I  F  L  A  M  I  S  I  P  F  F  D  C  Y  Q  H  S  I  K  V  *  G  S  K  I  W  E  K  M  D  H  Y  L  I  L  Q  I  A  L  *  Q  E  L  L  V  H  F  I  L  D  F  F  L  P  I  A  Y  T  L  S  T  P  L  I  V  F  I  G  F  L  K  Y  V  S  I  S  N  A  N  I  I  I  G  R  K  S  *  I  C  V  I  C  *  K </second_frame>
            <third_frame>   H  *  S  S  S  H  E  W  R  N  G  R  C  *  L  C  Q  K  F  S  A  S   : A  K  G  D  P  H  D  E  I  N  N  R  *  S  H  I  F  S  L  Q  Q  P  F  L  K  R  N  D  M  H  C  G  F  R  L  F  F  W  T  K  H  F  F  V  S  L  S  I  H  S  N  Y  *  *  R  K  K  K  E  G  T  S  *  G  A  G  I  S  C  F  L  E  *  S  S  *  Q  *  F  Q  Y  H  F  S  I  A  T  N  I  P  S  K  F  E  E  A  K  Y  G  R  R  W  I  I  I  *  S  F  K  L  L  C  D  R  S  C  W  F  I  L  Y  *  T  F  S  F  Q  *  P  T  L  C  P  L  L  L  *  S  S  L  A  F  S  S  M  Y  Q  S  L  M  L  I  *  *  *  E  E  S  L  K  Y  V  L  F  V  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0046L21.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="50919" stop="50851"/>
                    <exon start="50672" stop="50226"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VTKVLHMNGGMGDASYAKNSLLQQKVILMTKSITDEAISSLYNNLSSRETICIADLGCSSGPNTFLSVSQFIQTIDKERKKKGRHKAPEFHVFLNDLPSNDFNTIFRLLPTFHQSLRKQNMGEDGSLFDPSNCFVTGVAGSFYTRLFPSNSLHFVHSSYSLHWLSQVCINL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 46 chains have been computed
$ 
$ memory statistics:
$ 54696 bytes spliced alignments in total
$ 19 spliced alignments have been stored
$ 2878 bytes was the average size of a spliced alignment
$ 10152 bytes predicted gene locations in total
$ 4 predicted gene locations have been stored
$ 2538 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 49 backtrace matrices have been allocated
$ 
$ date finished: 2009-02-20 11:32:23
-->
