<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-01-16 03:06:49"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7390" ref_strand="+" ref_description="SGN-M7390 C2_At2g33610 [cosii_markers]">
      <seq>tcgctttcttcctgaattctttgatggaaggtcgccttccaagaaccctaagacatacaaatactataggaatactattattcgtagattcagagataaccccactaaaaagataacctttactgaggctcgcaagaccattgttggagacgtcggctcaattcgtagggttttcgatttctcagagacatggggtttgatcaattacactgctaactcttccaagtctctgatcaagtgggaagaaaaagagtcaaagtcaacatctgcctcagctccgcaaaatgctgacgccaatggaacgtccactgattttactctccccaagaaaagaatctgcaatctctgcaaaacagtttgcaggattgcttgtttcgcttctgataagtatgatttgactctttgtgcaagatgctatgttagtaatgataatagagttggcgtgaataattcagagcttcgacgggttgagattagtgaggaagttaagacagattggactgacaaagagactttgcaccttttagaagctcttatgcattatggcgatgattggaagaaggttgctgagcatgttggtggcagaagcactaaggaatgtgtggctagatttgtcaagcttcctttcggtgagcagtttatgggccctcctgaatctgcagaaatggatagtgaatccaggtctgaaactatgtatcttcagtctaagagaaggcgcctcacaccctttgctgatacaagcaacccaattatagcacaggctgctttcctctctgctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="2134" stop="440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1834" g_stop="1447" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="388" r_length="388" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.920" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="1116" g_stop="745" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="760" r_length="372" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-M7390" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>760</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M7390" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1834" e_stop="1447"/>
          <exon e_start="1116" e_stop="745"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAGGTGATTGCAACAGTCCTCTATTTTAGAGTGTTTGCTTTATCTTGTTTATTCGTAAATTAGAAGGACTAATTGGTATCTAACAACTCTTTTGAATCAAGTTTGAATCTTTTAGCTTCTCCTCAGTTGGTCATGCTTACCTCTTAGCTCTCACATCTCAGTCTATAGATTCATACTTTTCATAGCTCATGGTTTCTATTTAAAAAGTTCTCTTCTTTTTTTTTTCTTTTTTTTTTTGCTTAATCCTAAATGGCAGTTTACTTGAGGTGTTGGTTGGGCTTGTTGCTATTGTCAAAAATGAGTTTACTTCAATTTTTGTTTGTTTAAATGCAGTATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</genome_strand>
        <mrna_strand>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG..........................................................................................................................................................................................................................................................................................................................................TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M2099" ref_strand="+" ref_description="SGN-M2099 T1564 [cos_markers]">
      <seq>ggaattcggcacgagggccgcttctacgacagcaaacccacccgaatccaaaagttgggcagaccaagccgacgagatcgatcaagctgagcagtcttccgcttctaatgaggacgctgctgccgagataaatatcggatctctacaagtcgatgagtccaaaagagacaactccactctctctgatccggaagattccagcatagaagcggttacgtctggcgatactatgtacaaatcagcgaagagatttgaggatttgaacttatctcctgagctattgaagggattatatgtacaaatgcagtttgagcgtcctagcaagattcaggaaattagtttgcctatgattcttacgcctccgtacaagaatcttattgctcaggctcataacggttctggtaaaactacttgctttgtgcttgggatgttgagtcgaattgatccaaagcttgctgcccctcaagctctctgtatctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="19294" stop="18101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18984" g_stop="18790" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="211" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.970" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="18669" g_stop="18401" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="480" r_length="269" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-M2099" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M2099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18984" e_stop="18790"/>
          <exon e_start="18669" e_stop="18401"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCGGTACGTTTTTCCTCACTCTTTATTGTTTTGTTTTTGGATTTGATGCACTCTTTGGAGCTTGAATAAGCTGAATTTGCTGTATTTTTAGCTAAATTAGAGTTTTATCAATGAAATATATAGGTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</genome_strand>
        <mrna_strand>GCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAGATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG........................................................................................................................GTTACGTCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M3916" ref_strand="+" ref_description="SGN-M3916 cTOE-17-L11 [est_clones]">
      <seq>ttatattgaaacacacaaaaaagtgaggtaggcataaacaatggatgcagattacggcatagctcgagaactctctgatttgcagaaacttcgatctcactaccaccctgaacttccaccttgtcttcagggtactactgtccgggtagaactccgtgatgcaaccactgcagcagatccctctggtgaacacacaattaaacgcttcttcccacacacttatggtcaaccattagcccattttcttagggcaactgccaaggtccctgatgctcagataattactgagcatcctgcaattagggttggggtgctattttgtggtagacaatctcctggaggacacaacgtgatatggggtcttcatgatgctcttaaggttcacaaccccaataatatcttgcttgggtttttaggtggttctgaaggtttatttgcacaaaaaactctagagatcaccgatgatgttcttgctacctataagaatcaaggtggatatgacatgctggggcggacaaaagatcagattagaacgactgagcaagtaaatgctgcaatggctgcatgcaaagctttgaaattggatggtcttgtcatcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="70934" stop="68481"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70634" g_stop="70505" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="69956" g_stop="69784" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="303" r_length="173" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69447" g_stop="69335" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="416" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69050" g_stop="68976" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="491" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="68890" g_stop="68781" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="601" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-M3916" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>601</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M3916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70634" e_stop="70505"/>
          <exon e_start="69956" e_stop="69784"/>
          <exon e_start="69447" e_stop="69335"/>
          <exon e_start="69050" e_stop="68976"/>
          <exon e_start="68890" e_stop="68781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAGGTACAACTCTGTTCTATTCATCCACTCCTAACTACTACTACTAGTTTATATATGCCAAACTCTTTGCTAGATCTAACCTGCTACATCACACTCTTTTCTATCCTCGTACCACTATTTTCTTCATATCACGTCTAATTATTACACCATTTATTTGAGAGAGTATTTCAGAAAGTTGGCATATATATATATATCCTTGCAGCCGGCTGAAAGATCACATCTTTACATTTTCATCTGCAAAATAAGTCACCTCTTTACTTCAACTCAAGTAAACAACACATATAGACTGGCTCTGTTGCCCTTTTTGAAATAAATTATCGGGAAAAAATGCTGCTAAACTTTGACAAAATAAAACTTACAAGTTGCTCAGATTTTGTCTGACTGTTCCCAGACATTCATGGCTGTCCAACTTTTGTAGTTAAATGCATCACCACTTTGCTGATTGTTTACATTTTGGAATTTTATCTATGATATTTAAGAACCATTAAGCAATTTGTCCTTCAATGTTATTATTAACATATTCATCTTGAGAATTGTTCTGACTTATACAGGGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAGGTATTGCATCAGACGATTGCTCTATAATTGTGCAGTTCACTCACAAACTAGATCAGCATTGTGATCACTGATCAGGAGATGTTTTCTAACAAAATTCTATGTTGAGGTTTATGGATCTACCTCTGTTTTCTTGATAACATTCCTTTTGTTTTGTCTGTGATTGAAATCCTTTTCTATTTATATCCTCAAAATCTTAACACAGGGGAAATAATAGAAAATATTGGTTTATGCATTAGAAGCTAATTCACATATAGGTTACAATAAAATGAGTGTTATCCCTAATCTCTTTATTAGGACTGAAAACTGTGCTCACTGATTATCCTCTTCTTTTCTTAGGGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAGGTAAGCATTTCCTTTACACTACACATTTTTCATTTGAGAACTTTTTTATGACAATTAGTGGGACACTACAGTAATAGTTGACACAAGTGTCTATTTGCATATCTACTTTACCACCATTACCATGAGTGTCTCTTTGCATGTGTCATGTTTAATATTTCGAGGGTCAATCCCTAACGTCAAACAATGTTTTTCCTGTCATGCTCTAATGTTTTCAGTTTTCTAGAAACTTGATTCTCCTTAGAGAAGGCTAATGTGTTGAAGGTCTCTTTTCCAAATCTCAACAGGTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAGGTAATTCACATCTGGATGAAGTTTGCTCTTTATATTTTCGTTTGGCCTTTTTTGGCTTATTTTTGTTGCCTTTTTCCTTGTTAAGGTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATT</genome_strand>
        <mrna_strand>TTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG................................................................................................................................................................................................................................................................................................................................................GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG............................................................................................................................................................................................................................................................................................GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG.....................................................................................GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6799-3" ref_strand="+" ref_description="SGN-M6799-3 C2_At1g42990-3 [cosii_markers]">
      <seq>cagaggtcgggtcccaaatagtaagtcgggccctagtttcttcacccccacaatctccgtcgaactggcgatggtcgataacttcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatccccacgatgatgatcaattcactcttcatgattcctccccacagacattccagcagatcgagcagcttcttatgaacgatgacgatgtcggtcttgtctcttttgaagacgctgatcctcaatttgctgccgactttctctccgacgtcctcgtcgattcccctcttcactccgatcattctcactctcctgctgaacaagccattggattcaccgattccaaggtttctagtggatccgacgccgatcaggacaaacacaagtcgccttctgacggggacgacgaattaaacaaccatgaccctgtcgataagaagcgcaagaggcaattgaggaacagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttctctttgcagaatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctcttgttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaaatcagggaagcagaaaccacgggcttctccttccaataaaggaaggaaaaaagactagtcggattttgttgttcctgtccttcatgatgggcaaaagatgcaaagcttcaagatcgaggatgaagttcaacccccattccttgggagttgtgatgtgattcgttgtgatcaaatccattcccttaggtggatcatggttccttttgagttctttagttttgtgtcagagattctctgtatgtgtcttgctttgacatctgaaggatgtagttcactgttattagttaatgacttatgagctatatatattatctatgcaactttttaacagttccaaccggaaaaaaaaaaaaaaaagagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73987" stop="71139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73687" g_stop="73235" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="0.839"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.992" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="692" r_length="224" r_score="0.982"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71442" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="1122" r_length="430" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1124" polyA_stop="1141"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-M6799-3" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>1106</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6799-3" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73687" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCC-CACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAAT--CC-CGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTG--TC---T-------CTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATA-A-TATCTATGCAACTTTTTAATAGTTCCAACCG</genome_strand>
        <mrna_strand>CAGAGGTCGGGTCCC-AAATAGTAAGTCGGGCCCTAGTTTCTTCACCCCCACAATCTCCGTCGAACTGGCGATGGTCGATAACTTCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCCACGATGATGATCAATTCACTCTTCATGATTCCTCCCCACAGACATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATGTCGGTCTTGTCTCTTTTGAAGACGCTGATCCTCAATTTGCTGCCGACTTTCTCTCCGACGTCCTCGTCGATTCCCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCACCGATTCCAAGGTTTCTAGTGGATCCGACGCCGATCAGGACAAACACAAGTCGCCTTCTGACGGGGACGACGAATTAAACAACCATGACCCTGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAACAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTCTCTTTGCAGAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTGTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAATCAGGGAAGCAGAAACCACGGGCTTCTCCTTCCAATAAAGGAAGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGGGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGTTCAACCCCCATTCCTTGGGAGTTGTGATGTGATTCGTTGTGATCAAATCCATTCCCTTAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTGTGTCAGAGATTCTC-TGTATGTGTCTTGCTTTGACATCTGAAGGATGTAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATATATTATCTATGCAACTTTTTAACAGTTCCAACCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M6799-2" ref_strand="+" ref_description="SGN-M6799-2 C2_At1g42990-2 [cosii_markers]">
      <seq>gacatccagagatcgggtcccaaaatagtgagtcggaccctagtttcttcaccccacaatctccgtcgaactggcgatgatcgataacatcgatgatatcatcaactgggacgatgtagatcacatcttccacaacgttctagacaatcccgacgatgatcaattcactcttcatgattcctccccacagtcattccagcagatcgagcagcttcttatgaacgatgacgatttcggtcttgtctctgatcctcagtttgctgccgaatctctttctgacttcctcgtcgattctcctcttcactccgatcattctcactctcctgctgaacaagccattggattctccgatcccaaggtttcaagtgccgatcaggacaaacacaaggtttcccagtcgccttctgacggcgacgacgaactaaacaaccatgaccccgtcgataagaagcgcaagaggcaattgaggaatagagatgcagctgtgaggtcacgagagaggaagaagttgtacgttagggatcttgagttgaagagtagatactttgaatcagaatgcaaaaggctggggtttgttctccagtgctgtcttgctgaaaatcaagctttacgcttttctttgcataatagcagtgctaatggtgtttctatgaccaagcaggagtctgccgtgctctttttggaatccctgctgttgggttccctgctttggttcctgggcatcacatgcctgctcattctacccagccaaacctggtcagttccagaagaaagtcagggaagcagaaaccacgggcttctggttccaataaaggagggaaaaaagactagtcggattttgttgttcctgtccttcatgatgagcaaaagatgcaaagcttcaagatcgaggatgaagctcaacccccatcccttgggagttgtgatgtgactcgttgtgatcaaatcttttcccataggtggatcatggttccttttgagttctttagttttttatcagagattctcttgtatgtgtcttgctttgacatctgaaggatgaagttcactgttattagttaatgacttatgagctatataatatctatgcaactttttaataaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="73993" stop="71152"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73693" g_stop="73235" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="459" r_length="459" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72309" g_stop="72086" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="683" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71870" g_stop="71452" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="684" r_stop="1102" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="1103" polyA_stop="1112"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-M6799-2" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1102</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M6799-2" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="73693" e_stop="73235"/>
          <exon e_start="72309" e_stop="72086"/>
          <exon e_start="71870" e_stop="71452"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAGGTATCTCTCTAGAGTTTTGCCCCTTTTTTCTTTCTAGTTTATTTATTCAATTTGTTTATAATTCTAGCACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTAGTTTATTTATTCAATTTGTTTATAATTCTAGTACTTCTCTTTGCTTATAACTCTTCTGCACACACGATTTACACTACTGTGGCTTCTTTTACTTCTCGTGTTGTATCTCTTCTTTGAAAATGGTTGACCTACTAGCAGAAACAAATCCTAGTTTTGATATCTTAGTTAGTGTAACTCATGTTTATTAAATTTGCTTCATGTAAATTATCAATGACCAGAAAAATCTTTGCAGTTCCTGTGTATGCAAAAACCATATCCACATAGTGCCTTCTCAGCCAAATCGCGAATCAGTATTTCCAAGGAGTTCCTTTCTATAAGATTGCCTTAATTTGACATCACACATTGACTGTATGAGCCATTCATTTCATGATTTGATTTGTGACGTGTTAGAACATAATGTTCATTCTCTATTGATTATGAAACAAAAATATGATTCTCTTTTCCGAAGACATACAGATTTTATCAAAGCACATGATGCTGCAACTTTTCCATTAGTTTGCAATCATGAACACACCCCCAAGTGGGAAACTTTCCTGAATAGCAAACTACTTCTAGACTTCTTAGAATAAGAAGCCATGTCCTTGAAAGATTGCACTTATTTAATGTGTGATGGATATATTATTATGTAATGTGCGCATTTATCATGCTTAAAATTGCATAACATCTTGTGCATTTATCTAGAGTAGTTTAATACACCCCTCTCCTCTTCTATTTCAAAATGGTGAGAGGATTGTACTTATCTAATCTGTATGTATATAGCAGCTTAAAGAAAATCTCAGTCACAAACTTAATTTTTGTTCTCCAGGCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGGGTAAGTGCATAAGAAACATTCTTGTCATCTGTGGCTAAAATACTTTCTTTATACCACTTTTTGCTCTGCTACAATTTTCTGGACTTTGCTTTAGTTGGCGTTTGAAGCAAGAAATAGATGTGAATGTCTTGACATTTTTCCATCTTGCCATGGTTATGTTGGATAGATATTTTCTCTCAAATGCCTACATTAATAGATGCAATATGAATTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</genome_strand>
        <mrna_strand>GACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG.......................................................................................................................................................................................................................AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7072" ref_strand="-" ref_description="SGN-M7072 C2_At1g76560 [cosii_markers]">
      <seq>atttcacaagaaatctgtacattttttttccaccagaaatcaacagacatccgaaaaaagtcatctataataaataattgtgatggctttgaacttgaagcaggcatctatattcccaattcatgttgctagtgtaactggatccaggaggaaaggagtgcaaaaggtgatgatgatgatgagtggatcagcaggagtaccaaagtataaggggacgcagatgagagaaaaacagctgacggaaatgatagagaagaaagtgaaggaagctaaggaggtatgcagtgaagacgccagatcggacgagtgcaaggtggcatgggatgaggtggaagaagttagctaggctaaggtgcatttgcgcatcaagcttcagcttaatcaagatccccttgaaccttactgtcaaaataaccctgacgccgacgagtgccgcacctatgaccattaattaattaattattaggatttcactcttgttgtacttggacttgtctactgtatttctctccaatttagtatgattacagttaattactagtaaaaaaccctccatctgcttttcaggtttgttatattagtgtatcttcactgctttatgaagcatttgttaggtaagttcaaatgtcatgtccatatatatacagacgaataaaacaagtagatattgagcgacgttaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="81012" stop="82293"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="81312" g_stop="81992" g_length="681"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="681" r_length="681" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="703"/>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-M7072" ref_strand="-">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7072" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="81312" e_stop="81992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTCACAAGAAATCTGTACATTTTTTTTCCACCAGAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</genome_strand>
        <mrna_strand>ATTTCACAAGAAATCTGTACATTTTTTTTCCACCAGAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTAAAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M390-F" ref_strand="+" ref_description="SGN-M390-F TG498-F [rflp_markers_forward]">
      <seq>aaaaattaacggattctgcccaccgtagccttgcggatcacctcactgcctctcgcatggatgaccttcttagttatcctgataggctgtctgaagaaatagtcaaatgcatatcttgtatatactgcaaatttgccaatcccaatattcttgctccaaagggattatcagtttcttctacttcgtcattgtcatcatcaagcacattttctccgagaaatctttcgggcagctggagctcacatcacaatgaggagagcactgagcagtatgaatttgaagtgatagaaattttgaagatatgtctagatgatgatagtttcaattatgccacaacaatgctgcataagttcaggttatttgcaacaaacacaagtagttcaaatagagttaaagagtacaaaaatcttcaatacctgctagtgtggacttgattaaaaagcatgttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="107793" stop="108843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108093" g_stop="108543" g_length="451"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="451" r_length="451" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-M390-F" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M390-F" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108093" e_stop="108543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAGGTTATTTGCAACAAACACAAGTAGTTCAAATAGAGTTAAAGAGTACAAAAATCTTCAATACCTGCTAGTGTGGACTTGATTAAAAAGCATGTTAAG</genome_strand>
        <mrna_strand>AAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAGGTTATTTGCAACAAACACAAGTAGTTCAAATAGAGTTAAAGAGTACAAAAATCTTCAATACCTGCTAGTGTGGACTTGATTAAAAAGCATGTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M390-R" ref_strand="+" ref_description="SGN-M390-R TG498-R [rflp_markers_reverse]">
      <seq>ggagacagcttgcatgcctgcagagcatcaacgtagtaaaaataaaacttatatactactatattgagtatattcagattgtattgtcatttctccatttagaagttgcatcttctctttagccttgattggtggagaaaggagggagaaaagtgacaattatttataaaaacaatttctgatgcagtagaacttaccatttagatggaacattttacagctttcaaattagtatgacaaattcaaattggtgaattaagcttgtcgaacacttcttaacatgctttttaatcaagtccacactagcaggtattgaagatttttgtactctttaactctatttgaactacttgtgtttgttgcaaataacctgaacttatgcagcattgttgtggcataattgaaactatcatcatctagacatatcttcaaaatttctatcacttcaaattcatactgctcagtgctctcctcattgtgatgtgagctccag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="-" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="109107" stop="108025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108804" g_stop="108325" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="493" r_length="479" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="-" ref_id="SGN-M390-R" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-M390-R" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108804" e_stop="108325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCTGCAGAGCATCAACGTAGTAAAAATAAAACTTATATACTACTATATTGAGTATATTCAGATTGTATTGTCATTTCTCCATTTAGAAGTTGCATCTTCTCTTTAGCCTTGATTGGTGGAGAAAGGAGGGAGAAAAGTGACAATTATTTATAAAAACAATTTCTGATGCAGTAGAACTTACCATTTAGATGGAACATTTTACAGCTTTCAAATTAGTATGACAAATTCAAATTGGTGAATTAAGCTTGTCGAACACTTCTTAACATGCTTTTTAATCAAGTCCACACTAGCAGGTATTGAAGATTTTTGTACTCTTTAACTCTATTTGAACTACTTGTGTTTGTTGCAAATAACCTGAACTTATGCAGCATTGTTGTGGCATAATTGAAACTATCATCATCTAGACATATCTTCAAAATTTCTATCACTTCAAATTCATACTGCTCAGTGCTCTCCTCATTGTGATGTGAGCTCCAG</genome_strand>
        <mrna_strand>TG-CCTGCAGAGCATCAACGTAGTAAAAATAAAACTTATATACTACTATATTGAGTATATTCAGATTGTATTGTCATTTCTCCATTTAGAAGTTGCATCTTCTCTTTAGCCTTGATTGGTGGAGAAAGGAGGGAGAAAAGTGACAATTATTTATAAAAACAATTTCTGATGCAGTAGAACTTACCATTTAGATGGAACATTTTACAGCTTTCAAATTAGTATGACAAATTCAAATTGGTGAATTAAGCTTGTCGAACACTTCTTAACATGCTTTTTAATCAAGTCCACACTAGCAGGTATTGAAGATTTTTGTACTCTTTAACTCTATTTGAACTACTTGTGTTTGTTGCAAATAACCTGAACTTATGCAGCATTGTTGTGGCATAATTGAAACTATCATCATCTAGACATATCTTCAAAATTTCTATCACTTCAAATTCATACTGCTCAGTGCTCTCCTCATTGTGATGTGAGCTCCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/gth_cdna_fileCXGN::BACSubmission::Analysis::GenomeThreader_SGN_markers" ref_id="SGN-M7073" ref_strand="+" ref_description="SGN-M7073 C2_At1g76630 [cosii_markers]">
      <seq>cctcgagactaggagctcttcatacttctccaacagtcatttgataaggacccttcttggctatctgttagtatccagcagggaatggaaagatgttcacatttcagctcgatgcttcagagtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttcagatttttggtgctggagcagttgcttgctgtaatgtggggagcggcaagaagacactagcaatgtccatctgtagagaaaattcaacactggagtgcaaaacgatcaagctgctgcagaagtgtgtccatcaggagccttgggaccatcattcatattacctccttgtactaaattatcttcagaaggcgcgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggctcttcgaagtgagctttatgcaaaagatgatatttcttcccagtaccaaaagttccagcttctgctttgtgccgcggaggttagtttgcattgtgggaataatttcaagtgcattatgcatgcaaaaagtactctagagatgcagcttccagataactacctcttctttgcacacttgctactatgtcgtgcctatgctgtagaagataattattcaggacttcatgaagaatacataaggtgcttgcagctaaaaactgataatcatattggttggatttgtcttaagtttcttgaaagtcgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtctggcaaagaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaactgcagcttggaatggggaatttattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C04SLm0059M16-XL5kz/GenomeThreader_SGN_markers/un_xed_seqs" temp_id="C04SLm0059M16.1" temp_strand="+" temp_description="C04SLm0059M16.1  CU179634.6 htgs_phase:3 submitted_to_sgn_as:C04SLm0059M16 sequenced_by:sanger upload_account_name:uk">
        <position start="123952" stop="127268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="124255" g_stop="124290" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="48" r_length="35" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666">
            <donor d_prob="0.873" d_score="0.00"/>
            <acceptor a_prob="0.958" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="125957" g_stop="126199" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="291" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="126393" g_stop="126968" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="867" r_length="576" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C04SLm0059M16.1" gen_strand="+" ref_id="SGN-M7073" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C04SLm0059M16.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-M7073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="124255" e_stop="124290"/>
          <exon e_start="125957" e_stop="126199"/>
          <exon e_start="126393" e_stop="126968"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCTTCATACTTCTCCAAACAGTCATTTGATAAGGTACATTTTCGTGTTGTCCACTTTGGCATGAACTAGTGAATTGTGCTTGATCAGAGCACTTCAGATTAATGGGTGCAATTCATTTTAATCATGGTTTGCTTTAGATTGGAACAATAAAAAACTAAGCCTCAGTTACTAATAAGTCGGGGCTGACTACATGAATCCTCACGGACCATGTCTTTTCATTTATTTGAATTATGATTTGCTTGAGATTGAAGAGTTGGCTCATTTTGGATGCAATTTTTGTGGTTGTTCCAGATTGAAGTTGGAAAAATACGTGACTTTCTGTTTTTATTTCAGAAAGCATTTTGTTTCCTTTGCTGCTTGAGAAATAAATGCATCTTATTGTGGTGGTTTGAGTTAGGCCTCATTTGTTTGCACTTAAAGAAAGTCTGAATCTGTATGATTTAGATCGTATGCCATTAAGTGCATTCGTTTTCATTAAGATTTAAGTAATTATTTTGTATGAAATAAATCTTAATCATTTAAGATCTTGAATAGAGTCTTAATATCATTAGAGATATTTTTGTTTGGATAGTTTTCATCACCACTCTATCTACAATCACCAGCCACCACCACTAACATGCTCTGCCATCACAACCACTACCATCATTGTCAACCAACATTACTGTAACCAACCACCGATCCCCAACCAGTGGCAACCACCACTACTGTCAGTCGCTACCACACCTATCAAGTTAAAATCTCAGCAAGAGGCAAAAAAAAAGCCAAGTAATCCTGTCCCGTTGGCTAAGGCTGTGGGAAATCTGCAGTTGATTGGTCAACGTGAGTGCTGGTATGGCCACTATTATTATTATAAAAAGATAATAAATAAATTACTGAAGTCATGATTCTTGGTCACAGTCTGTCAGTTCCTACTTGAACTCCTGCAAAGAATTCAATCTTCTACATTAGCATCACTTAATTTACACATCAATGTCCATGCTTGCTATTTAACTCGGGGTGGTAGTTGGAGCGCTTGGCGTTTGCTAAGTTTTCTCGGCCTTTGGAAATCTTTGCACGGATGTCCAGTTCATGCTCAAAAACTCTTGCTGAATATCATTGGTCCGTCTTCTCTCATTTTGCACAATTGATTTGTTCCACGTTGATTTTCGTTTTCTTATATAATGGTAACTGCATAGTCCTCACAAAACTATGCTGGCATCTAGATTTACAAAATATCCTGTGAGTCCTAATGAACCTATTTACAGTTATTCCAAAAACTCTAGTATTGACTCGGACTCCGCCACAAAAAATTCTTTACTCCAGAAATGCAAAAACATAATGTAATCAGCCTTAATTTTCTGCTTAGAGTTAGATTATCCCTCAAAACCCCTTGCATTCCTTTCTCTCCAAACTGTCCACCATATTGTGGCTGGTATGACCTTGCACTATAGTTTCAACAACCCAGCAATTCATGGTGTTTCCTGGCATTAACCACTTCTTCTTTCCCAGATTTTCGTTCGTCTTTCACTACGGGTCCATTTCAATCATGGTGTAATTTGTTTGAATTACTTGCTGTGTTGATCTTGACACTTGAAAGAGTTTAGCGAAAATGCATTGTTGATTGCTATTTGTATATATGGAACTTATTTCCATCTGTAAATTTGTGTTCTTAGTATGATGATTAAAGTTGATTAATCTTCTGCAATATTCTGGTGAATAGGACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAAGTAATCTTCTTTATCCACATGCTGTGGGGCTTTATTTATGAAATTTTATTTCTATTACACACTTTCTGTGGCTCACTTTATTGATAAATAATCTCATACTTCTGGTGAGATGGGAGGAAGACACGTGAATTTATTCCATGAAATATATGCCAAAGCTGTTCTGTGCGTCTAATTTAAATGTTTATATTTATAGGTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGA</genome_strand>
        <mrna_strand>AGCTCTTCATACTTCTCC-AACAGTCATTTGATAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA.................................................................................................................................................................................................GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATTGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTCTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>9</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="1834" PGL_stop="745"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1834" e_stop="1447"/>
            <exon e_start="1116" e_stop="745"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.920" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="1834" e_stop="1447" e_length="388"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.920">
            <gDNA_intron_boundary i_start="1446" i_stop="1117" i_length="330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="1116" e_stop="745" e_length="372"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1834" stop="1447"/>
              <exon start="1116" stop="745"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7390" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCGCTTTCTTCCTGAATTCTTTGATGGAAGGTCGCCTTCCAAGAACCCTAAGACATACAAATACTATAGGAATACTATTATTCGTAGATTCAGAGATAACCCCACTAAAAAGATAACCTTTACTGAGGCTCGCAAGACCATTGTTGGAGACGTCGGCTCAATTCGTAGGGTTTTCGATTTCTCAGAGACATGGGGTTTGATCAATTACACTGCTAACTCTTCCAAGTCTCTGATCAAGTGGGAAGAAAAAGAGTCAAAGTCAACATCTGCCTCAGCTCCGCAAAATGCTGACGCCAATGGAACGTCCACTGATTTTACTCTCCCCAAGAAAAGAATCTGCAATCTCTGCAAAACAGTTTGCAGGATTGCTTGTTTCGCTTCTGATAAG : TATGATTTGACTCTTTGTGCAAGATGCTATGTTAGTAATGATAATAGAGTTGGCGTGAATAATTCAGAGCTTCGACGGGTTGAGATTAGTGAGGAAGTTAAGACAGATTGGACTGACAAAGAGACTTTGCACCTTTTAGAAGCTCTTATGCATTATGGCGATGATTGGAAGAAGGTTGCTGAGCATGTTGGTGGCAGAAGCACTAAGGAATGTGTGGCTAGATTTGTCAAGCTTCCTTTCGGTGAGCAGTTTATGGGCCCTCCTGAATCTGCAGAAATGGATAGTGAATCCAGGTCTGAAACTATGTATCTTCAGTCTAAGAGAAGGCGCCTCACACCCTTTGCTGATACAAGCAACCCAATTATAGCACAG</gDNA_template>
            <first_frame> S  L  S  S  *  I  L  *  W  K  V  A  F  Q  E  P  *  D  I  Q  I  L  *  E  Y  Y  Y  S  *  I  Q  R  *  P  H  *  K  D  N  L  Y  *  G  S  Q  D  H  C  W  R  R  R  L  N  S  *  G  F  R  F  L  R  D  M  G  F  D  Q  L  H  C  *  L  F  Q  V  S  D  Q  V  G  R  K  R  V  K  V  N  I  C  L  S  S  A  K  C  *  R  Q  W  N  V  H  *  F  Y  S  P  Q  E  K  N  L  Q  S  L  Q  N  S  L  Q  D  C  L  F  R  F  *  *   : V  *  F  D  S  L  C  K  M  L  C  *  *  *  *  *  S  W  R  E  *  F  R  A  S  T  G  *  D  *  *  G  S  *  D  R  L  D  *  Q  R  D  F  A  P  F  R  S  S  Y  A  L  W  R  *  L  E  E  G  C  *  A  C  W  W  Q  K  H  *  G  M  C  G  *  I  C  Q  A  S  F  R  *  A  V  Y  G  P  S  *  I  C  R  N  G  *  *  I  Q  V  *  N  Y  V  S  S  V  *  E  K  A  P  H  T  L  C  *  Y  K  Q  P  N  Y  S  T  </first_frame>
            <second_frame>  R  F  L  P  E  F  F  D  G  R  S  P  S  K  N  P  K  T  Y  K  Y  Y  R  N  T  I  I  R  R  F  R  D  N  P  T  K  K  I  T  F  T  E  A  R  K  T  I  V  G  D  V  G  S  I  R  R  V  F  D  F  S  E  T  W  G  L  I  N  Y  T  A  N  S  S  K  S  L  I  K  W  E  E  K  E  S  K  S  T  S  A  S  A  P  Q  N  A  D  A  N  G  T  S  T  D  F  T  L  P  K  K  R  I  C  N  L  C  K  T  V  C  R  I  A  C  F  A  S  D  K  :  Y  D  L  T  L  C  A  R  C  Y  V  S  N  D  N  R  V  G  V  N  N  S  E  L  R  R  V  E  I  S  E  E  V  K  T  D  W  T  D  K  E  T  L  H  L  L  E  A  L  M  H  Y  G  D  D  W  K  K  V  A  E  H  V  G  G  R  S  T  K  E  C  V  A  R  F  V  K  L  P  F  G  E  Q  F  M  G  P  P  E  S  A  E  M  D  S  E  S  R  S  E  T  M  Y  L  Q  S  K  R  R  R  L  T  P  F  A  D  T  S  N  P  I  I  A  Q </second_frame>
            <third_frame>   A  F  F  L  N  S  L  M  E  G  R  L  P  R  T  L  R  H  T  N  T  I  G  I  L  L  F  V  D  S  E  I  T  P  L  K  R  *  P  L  L  R  L  A  R  P  L  L  E  T  S  A  Q  F  V  G  F  S  I  S  Q  R  H  G  V  *  S  I  T  L  L  T  L  P  S  L  *  S  S  G  K  K  K  S  Q  S  Q  H  L  P  Q  L  R  K  M  L  T  P  M  E  R  P  L  I  L  L  S  P  R  K  E  S  A  I  S  A  K  Q  F  A  G  L  L  V  S  L  L  I  S :   M  I  *  L  F  V  Q  D  A  M  L  V  M  I  I  E  L  A  *  I  I  Q  S  F  D  G  L  R  L  V  R  K  L  R  Q  I  G  L  T  K  R  L  C  T  F  *  K  L  L  C  I  M  A  M  I  G  R  R  L  L  S  M  L  V  A  E  A  L  R  N  V  W  L  D  L  S  S  F  L  S  V  S  S  L  W  A  L  L  N  L  Q  K  W  I  V  N  P  G  L  K  L  C  I  F  S  L  R  E  G  A  S  H  P  L  L  I  Q  A  T  Q  L  *  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1833" stop="1447"/>
                    <exon start="1116" stop="745"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>759</number_coding_nucleotides>
                  <number_encoded_amino_acids>253</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RFLPEFFDGRSPSKNPKTYKYYRNTIIRRFRDNPTKKITFTEARKTIVGDVGSIRRVFDFSETWGLINYTANSSKSLIKWEEKESKSTSASAPQNADANGTSTDFTLPKKRICNLCKTVCRIACFASDKYDLTLCARCYVSNDNRVGVNNSELRRVEISEEVKTDWTDKETLHLLEALMHYGDDWKKVAEHVGGRSTKECVARFVKLPFGEQFMGPPESAEMDSESRSETMYLQSKRRRLTPFADTSNPIIAQ</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="18984" PGL_stop="18401"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18984" e_stop="18790"/>
            <exon e_start="18669" e_stop="18401"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.970" e_score="0.995"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="18984" e_stop="18790" e_length="195"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.970">
            <gDNA_intron_boundary i_start="18789" i_stop="18670" i_length="120"/>
          </intron>
          <exon e_serial="2" e_score="0.996">
            <gDNA_exon_boundary e_start="18669" e_stop="18401" e_length="269"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18984" stop="18790"/>
              <exon start="18669" stop="18401"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M2099" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGCTTCTACGACAGCAAACCCACCCGAATCCAAAAGTTGGGCAGACCAAGCCGACGAAATCGATCAAGCTGAGCAGTCTTCCGCTTCTAATGAGGACGCTGCTGCCGAGATAAATATCGGATCTCTACAAGTCGATGAGTCCAAAAGAGACAACTCCACTCTCTCTGATCCGGAAGATTCCAGCATAGAAGCG : GTTACATCTGGCGATACTATGTACAAATCAGCGAAGAGATTTGAGGATTTGAACTTATCTCCTGAGCTATTGAAGGGATTATATGTACAAATGCAGTTTGAGCGTCCTAGCAAGATTCAGGAAATTAGTTTGCCTATGATTCTTACGCCTCCGTACAAGAATCTTATTGCTCAGGCTCATAACGGTTCTGGTAAAACTACTTGCTTTGTGCTTGGGATGTTGAGTCGAATTGATCCAAAGCTTGCTGCCCCTCAAGCTCTCTGTATCTG</gDNA_template>
            <first_frame> A  A  S  T  T  A  N  P  P  E  S  K  S  W  A  D  Q  A  D  E  I  D  Q  A  E  Q  S  S  A  S  N  E  D  A  A  A  E  I  N  I  G  S  L  Q  V  D  E  S  K  R  D  N  S  T  L  S  D  P  E  D  S  S  I  E  A  :  V  T  S  G  D  T  M  Y  K  S  A  K  R  F  E  D  L  N  L  S  P  E  L  L  K  G  L  Y  V  Q  M  Q  F  E  R  P  S  K  I  Q  E  I  S  L  P  M  I  L  T  P  P  Y  K  N  L  I  A  Q  A  H  N  G  S  G  K  T  T  C  F  V  L  G  M  L  S  R  I  D  P  K  L  A  A  P  Q  A  L  C  I   </first_frame>
            <second_frame>  P  L  L  R  Q  Q  T  H  P  N  P  K  V  G  Q  T  K  P  T  K  S  I  K  L  S  S  L  P  L  L  M  R  T  L  L  P  R  *  I  S  D  L  Y  K  S  M  S  P  K  E  T  T  P  L  S  L  I  R  K  I  P  A  *  K  R :   L  H  L  A  I  L  C  T  N  Q  R  R  D  L  R  I  *  T  Y  L  L  S  Y  *  R  D  Y  M  Y  K  C  S  L  S  V  L  A  R  F  R  K  L  V  C  L  *  F  L  R  L  R  T  R  I  L  L  L  R  L  I  T  V  L  V  K  L  L  A  L  C  L  G  C  *  V  E  L  I  Q  S  L  L  P  L  K  L  S  V  S  </second_frame>
            <third_frame>   R  F  Y  D  S  K  P  T  R  I  Q  K  L  G  R  P  S  R  R  N  R  S  S  *  A  V  F  R  F  *  *  G  R  C  C  R  D  K  Y  R  I  S  T  S  R  *  V  Q  K  R  Q  L  H  S  L  *  S  G  R  F  Q  H  R  S   : G  Y  I  W  R  Y  Y  V  Q  I  S  E  E  I  *  G  F  E  L  I  S  *  A  I  E  G  I  I  C  T  N  A  V  *  A  S  *  Q  D  S  G  N  *  F  A  Y  D  S  Y  A  S  V  Q  E  S  Y  C  S  G  S  *  R  F  W  *  N  Y  L  L  C  A  W  D  V  E  S  N  *  S  K  A  C  C  P  S  S  S  L  Y  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18984" stop="18790"/>
                    <exon start="18669" stop="18403"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>462</number_coding_nucleotides>
                  <number_encoded_amino_acids>154</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AASTTANPPESKSWADQADEIDQAEQSSASNEDAAAEINIGSLQVDESKRDNSTLSDPEDSSIEAVTSGDTMYKSAKRFEDLNLSPELLKGLYVQMQFERPSKIQEISLPMILTPPYKNLIAQAHNGSGKTTCFVLGMLSRIDPKLAAPQALCI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="70634" PGL_stop="68781"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70634" e_stop="70505"/>
            <exon e_start="69956" e_stop="69784"/>
            <exon e_start="69447" e_stop="69335"/>
            <exon e_start="69050" e_stop="68976"/>
            <exon e_start="68890" e_stop="68781"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.990" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70634" e_stop="70505" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="1.000">
            <gDNA_intron_boundary i_start="70504" i_stop="69957" i_length="548"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="69956" e_stop="69784" e_length="173"/>
          </exon>
          <intron i_serial="2" don_prob="0.990" acc_prob="0.993">
            <gDNA_intron_boundary i_start="69783" i_stop="69448" i_length="336"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69447" e_stop="69335" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.972">
            <gDNA_intron_boundary i_start="69334" i_stop="69051" i_length="284"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69050" e_stop="68976" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="68975" i_stop="68891" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="68890" e_stop="68781" e_length="110"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70634" stop="70505"/>
              <exon start="69956" stop="69784"/>
              <exon start="69447" stop="69335"/>
              <exon start="69050" stop="68976"/>
              <exon start="68890" stop="68781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M3916" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTATATTGAAACACACAAAAAAGTGAGGTAGGCATAAACAATGGATGCAGATTACGGCATAGCTCGAGAACTCTCTGATTTGCAGAAACTTCGATCTCACTACCACCCTGAACTTCCACCTTGTCTTCAG : GGTACTACTGTCCGGGTAGAACTCCGTGATGCAACCACTGCAGCAGATCCCTCTGGTGAACACACAATTAAACGCTTCTTCCCACACACTTATGGTCAACCATTAGCCCATTTTCTTAGGGCAACTGCCAAGGTCCCTGATGCTCAGATAATTACTGAGCATCCTGCAATTAG : GGTTGGGGTGCTATTTTGTGGTAGACAATCTCCTGGAGGACACAACGTGATATGGGGTCTTCATGATGCTCTTAAGGTTCACAACCCCAATAATATCTTGCTTGGGTTTTTAG : GTGGTTCTGAAGGTTTATTTGCACAAAAAACTCTAGAGATCACCGATGATGTTCTTGCTACCTATAAGAATCAAG : GTGGATATGACATGCTGGGGCGGACAAAAGATCAGATTAGAACGACTGAGCAAGTAAATGCTGCAATGGCTGCATGCAAAGCTTTGAAATTGGATGGTCTTGTCATCATT</gDNA_template>
            <first_frame> L  Y  *  N  T  Q  K  S  E  V  G  I  N  N  G  C  R  L  R  H  S  S  R  T  L  *  F  A  E  T  S  I  S  L  P  P  *  T  S  T  L  S  S   : G  Y  Y  C  P  G  R  T  P  *  C  N  H  C  S  R  S  L  W  *  T  H  N  *  T  L  L  P  T  H  L  W  S  T  I  S  P  F  S  *  G  N  C  Q  G  P  *  C  S  D  N  Y  *  A  S  C  N  *  :  G  W  G  A  I  L  W  *  T  I  S  W  R  T  Q  R  D  M  G  S  S  *  C  S  *  G  S  Q  P  Q  *  Y  L  A  W  V  F  R :   W  F  *  R  F  I  C  T  K  N  S  R  D  H  R  *  C  S  C  Y  L  *  E  S  R :   W  I  *  H  A  G  A  D  K  R  S  D  *  N  D  *  A  S  K  C  C  N  G  C  M  Q  S  F  E  I  G  W  S  C  H  H  </first_frame>
            <second_frame>  Y  I  E  T  H  K  K  V  R  *  A  *  T  M  D  A  D  Y  G  I  A  R  E  L  S  D  L  Q  K  L  R  S  H  Y  H  P  E  L  P  P  C  L  Q  :  G  T  T  V  R  V  E  L  R  D  A  T  T  A  A  D  P  S  G  E  H  T  I  K  R  F  F  P  H  T  Y  G  Q  P  L  A  H  F  L  R  A  T  A  K  V  P  D  A  Q  I  I  T  E  H  P  A  I  R :   V  G  V  L  F  C  G  R  Q  S  P  G  G  H  N  V  I  W  G  L  H  D  A  L  K  V  H  N  P  N  N  I  L  L  G  F  L   : G  G  S  E  G  L  F  A  Q  K  T  L  E  I  T  D  D  V  L  A  T  Y  K  N  Q   : G  G  Y  D  M  L  G  R  T  K  D  Q  I  R  T  T  E  Q  V  N  A  A  M  A  A  C  K  A  L  K  L  D  G  L  V  I  I </second_frame>
            <third_frame>   I  L  K  H  T  K  K  *  G  R  H  K  Q  W  M  Q  I  T  A  *  L  E  N  S  L  I  C  R  N  F  D  L  T  T  T  L  N  F  H  L  V  F  R :   V  L  L  S  G  *  N  S  V  M  Q  P  L  Q  Q  I  P  L  V  N  T  Q  L  N  A  S  S  H  T  L  M  V  N  H  *  P  I  F  L  G  Q  L  P  R  S  L  M  L  R  *  L  L  S  I  L  Q  L   : G  L  G  C  Y  F  V  V  D  N  L  L  E  D  T  T  *  Y  G  V  F  M  M  L  L  R  F  T  T  P  I  I  S  C  L  G  F  *  :  V  V  L  K  V  Y  L  H  K  K  L  *  R  S  P  M  M  F  L  L  P  I  R  I  K  :  V  D  M  T  C  W  G  G  Q  K  I  R  L  E  R  L  S  K  *  M  L  Q  W  L  H  A  K  L  *  N  W  M  V  L  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70597" stop="70505"/>
                    <exon start="69956" stop="69784"/>
                    <exon start="69447" stop="69335"/>
                    <exon start="69050" stop="68976"/>
                    <exon start="68890" stop="68781"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMDADYGIARELSDLQKLRSHYHPELPPCLQGTTVRVELRDATTAADPSGEHTIKRFFPHTYGQPLAHFLRATAKVPDAQIITEHPAIRVGVLFCGRQSPGGHNVIWGLHDALKVHNPNNILLGFLGGSEGLFAQKTLEITDDVLATYKNQGGYDMLGRTKDQIRTTEQVNAAMAACKALKLDGLVII</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="73693" PGL_stop="71442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="73693" e_stop="73235"/>
            <exon e_start="72309" e_stop="72086"/>
            <exon e_start="71870" e_stop="71442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="73693" e_stop="73235" e_length="459"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="73234" i_stop="72310" i_length="925"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="72309" e_stop="72086" e_length="224"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="72085" i_stop="71871" i_length="215"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="71870" e_stop="71442" e_length="429"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73693" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71452"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6799-2" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73687" stop="73235"/>
              <exon start="72309" stop="72086"/>
              <exon start="71870" stop="71442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M6799-3" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACATCCAGAGATCGGGTCCCAAAATAGTGAGTCGGACCCTAGTTTCTTCACCCCACAATCTCCGTCGAACTGGCGATGATCGATAACATCGATGATATCATCAACTGGGACGATGTAGATCACATCTTCCACAACGTTCTAGACAATCCCGACGATGATCAATTCACTCTTCATGATTCCTCCCCACAGTCATTCCAGCAGATCGAGCAGCTTCTTATGAACGATGACGATTTCGGTCTTGTCTCTGATCCTCAGTTTGCTGCCGAATCTCTTTCTGACTTCCTCGTCGATTCTCCTCTTCACTCCGATCATTCTCACTCTCCTGCTGAACAAGCCATTGGATTCTCCGATCCCAAGGTTTCAAGTGCCGATCAGGACAAACACAAGGTTTCCCAGTCGCCTTCTGACGGCGACGACGAACTAAACAACCATGACCCCGTCGATAAGAAGCGCAAGAG : GCAATTGAGGAATAGAGATGCAGCTGTGAGGTCACGAGAGAGGAAGAAGTTGTACGTTAGGGATCTTGAGTTGAAGAGTAGATACTTTGAATCAGAATGCAAAAGGCTGGGGTTTGTTCTCCAGTGCTGTCTTGCTGAAAATCAAGCTTTACGCTTTTCTTTGCATAATAGCAGTGCTAATGGTGTTTCTATGACCAAGCAGGAGTCTGCCGTGCTCTTTTTGG : AATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGGCATCACATGCCTGCTCATTCTACCCAGCCAAACCTGGTCAGTTCCAGAAGAAAGTCAGGGAAGCAGAAACCACGGGCTTCTGGTTCCAATAAAGGAGGGAAAAAAGACTAGTCGGATTTTGTTGTTCCTGTCCTTCATGATGAGCAAAAGATGCAAAGCTTCAAGATCGAGGATGAAGCTCAACCCCCATCCCTTGGGAGTTGTGATGTGACTCGTTGTGATCAAATCTTTTCCCATAGGTGGATCATGGTTCCTTTTGAGTTCTTTAGTTTTTTATCAGAGATTCTCTTGTATGTGTCTTGCTTTGACATCTGAAGGATGAAGTTCACTGTTATTAGTTAATGACTTATGAGCTATATAATATCTATGCAACTTTTTAATAGTTCCAACCG</gDNA_template>
            <first_frame> D  I  Q  R  S  G  P  K  I  V  S  R  T  L  V  S  S  P  H  N  L  R  R  T  G  D  D  R  *  H  R  *  Y  H  Q  L  G  R  C  R  S  H  L  P  Q  R  S  R  Q  S  R  R  *  S  I  H  S  S  *  F  L  P  T  V  I  P  A  D  R  A  A  S  Y  E  R  *  R  F  R  S  C  L  *  S  S  V  C  C  R  I  S  F  *  L  P  R  R  F  S  S  S  L  R  S  F  S  L  S  C  *  T  S  H  W  I  L  R  S  Q  G  F  K  C  R  S  G  Q  T  Q  G  F  P  V  A  F  *  R  R  R  R  T  K  Q  P  *  P  R  R  *  E  A  Q  E  :  A  I  E  E  *  R  C  S  C  E  V  T  R  E  E  E  V  V  R  *  G  S  *  V  E  E  *  I  L  *  I  R  M  Q  K  A  G  V  C  S  P  V  L  S  C  *  K  S  S  F  T  L  F  F  A  *  *  Q  C  *  W  C  F  Y  D  Q  A  G  V  C  R  A  L  F  G :   I  P  A  V  G  F  P  A  L  V  P  G  H  H  M  P  A  H  S  T  Q  P  N  L  V  S  S  R  R  K  S  G  K  Q  K  P  R  A  S  G  S  N  K  G  G  K  K  D  *  S  D  F  V  V  P  V  L  H  D  E  Q  K  M  Q  S  F  K  I  E  D  E  A  Q  P  P  S  L  G  S  C  D  V  T  R  C  D  Q  I  F  S  H  R  W  I  M  V  P  F  E  F  F  S  F  L  S  E  I  L  L  Y  V  S  C  F  D  I  *  R  M  K  F  T  V  I  S  *  *  L  M  S  Y  I  I  S  M  Q  L  F  N  S  S  N   </first_frame>
            <second_frame>  T  S  R  D  R  V  P  K  *  *  V  G  P  *  F  L  H  P  T  I  S  V  E  L  A  M  I  D  N  I  D  D  I  I  N  W  D  D  V  D  H  I  F  H  N  V  L  D  N  P  D  D  D  Q  F  T  L  H  D  S  S  P  Q  S  F  Q  Q  I  E  Q  L  L  M  N  D  D  D  F  G  L  V  S  D  P  Q  F  A  A  E  S  L  S  D  F  L  V  D  S  P  L  H  S  D  H  S  H  S  P  A  E  Q  A  I  G  F  S  D  P  K  V  S  S  A  D  Q  D  K  H  K  V  S  Q  S  P  S  D  G  D  D  E  L  N  N  H  D  P  V  D  K  K  R  K  R :   Q  L  R  N  R  D  A  A  V  R  S  R  E  R  K  K  L  Y  V  R  D  L  E  L  K  S  R  Y  F  E  S  E  C  K  R  L  G  F  V  L  Q  C  C  L  A  E  N  Q  A  L  R  F  S  L  H  N  S  S  A  N  G  V  S  M  T  K  Q  E  S  A  V  L  F  L   : E  S  L  L  L  G  S  L  L  W  F  L  G  I  T  C  L  L  I  L  P  S  Q  T  W  S  V  P  E  E  S  Q  G  S  R  N  H  G  L  L  V  P  I  K  E  G  K  K  T  S  R  I  L  L  F  L  S  F  M  M  S  K  R  C  K  A  S  R  S  R  M  K  L  N  P  H  P  L  G  V  V  M  *  L  V  V  I  K  S  F  P  I  G  G  S  W  F  L  L  S  S  L  V  F  Y  Q  R  F  S  C  M  C  L  A  L  T  S  E  G  *  S  S  L  L  L  V  N  D  L  *  A  I  *  Y  L  C  N  F  L  I  V  P  T  </second_frame>
            <third_frame>   H  P  E  I  G  S  Q  N  S  E  S  D  P  S  F  F  T  P  Q  S  P  S  N  W  R  *  S  I  T  S  M  I  S  S  T  G  T  M  *  I  T  S  S  T  T  F  *  T  I  P  T  M  I  N  S  L  F  M  I  P  P  H  S  H  S  S  R  S  S  S  F  L  *  T  M  T  I  S  V  L  S  L  I  L  S  L  L  P  N  L  F  L  T  S  S  S  I  L  L  F  T  P  I  I  L  T  L  L  L  N  K  P  L  D  S  P  I  P  R  F  Q  V  P  I  R  T  N  T  R  F  P  S  R  L  L  T  A  T  T  N  *  T  T  M  T  P  S  I  R  S  A  R   : G  N  *  G  I  E  M  Q  L  *  G  H  E  R  G  R  S  C  T  L  G  I  L  S  *  R  V  D  T  L  N  Q  N  A  K  G  W  G  L  F  S  S  A  V  L  L  K  I  K  L  Y  A  F  L  C  I  I  A  V  L  M  V  F  L  *  P  S  R  S  L  P  C  S  F  W  :  N  P  C  C  W  V  P  C  F  G  S  W  A  S  H  A  C  S  F  Y  P  A  K  P  G  Q  F  Q  K  K  V  R  E  A  E  T  T  G  F  W  F  Q  *  R  R  E  K  R  L  V  G  F  C  C  S  C  P  S  *  *  A  K  D  A  K  L  Q  D  R  G  *  S  S  T  P  I  P  W  E  L  *  C  D  S  L  *  S  N  L  F  P  *  V  D  H  G  S  F  *  V  L  *  F  F  I  R  D  S  L  V  C  V  L  L  *  H  L  K  D  E  V  H  C  Y  *  L  M  T  Y  E  L  Y  N  I  Y  A  T  F  *  *  F  Q  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73650" stop="73235"/>
                    <exon start="72309" stop="72086"/>
                    <exon start="71870" stop="71623"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>885</number_coding_nucleotides>
                  <number_encoded_amino_acids>295</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FLHPTISVELAMIDNIDDIINWDDVDHIFHNVLDNPDDDQFTLHDSSPQSFQQIEQLLMNDDDFGLVSDPQFAAESLSDFLVDSPLHSDHSHSPAEQAIGFSDPKVSSADQDKHKVSQSPSDGDDELNNHDPVDKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRLGFVLQCCLAENQALRFSLHNSSANGVSMTKQESAVLFLESLLLGSLLWFLGITCLLILPSQTWSVPEESQGSRNHGLLVPIKEGKKTSRILLFLSFMMSKRCKASRSRMKLNPHPLGVVM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="81312" PGL_stop="81992"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="81312" e_stop="81992"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="81312" e_stop="81992" e_length="681"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="81312" stop="81992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7072" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTCACAAGAAATCTGTACATTTTTTTTCCACCAGAAATCAACAGACATCCGAAAAAAGTCATCTATAATAAATAATTGTGATGGCTTTGAACTTGAAGCAGGCATCTATATTCCCAATTCATGTTGCTAGTGTAACTGGATCCAGGAGGAAAGGAGTGCAAAAGGTGATGATGATGATGAGTGGATCAGCAGGAGTACCAAAGTATAAGGGGACGCAGATGAGAGAAAAACAGCTGACGGAAATGATAGAGAAGAAAGTGAAGGAAGCTAAGGAGGTATGCAGTGAAGACGCCAGATCGGACGAGTGCAAGGTGGCATGGGATGAGGTGGAAGAAGTTAGCTAGGCTAAGGTGCATTTGCGCATCAAGCTTCAGCTTAATCAAGATCCCCTTGAACCTTACTGTCAAAATAACCCTGACGCCGACGAGTGCCGCACCTATGACCATTAATTAATTAATTATTAGGATTTCACTCTTGTTGTACTTGGACTTGTCTACTGTATTTCTCTCCAATTTAGTATGATTACAGTTAATTACTAGTACAAAACCCTCCATCTGCTTTTCAGGTTTGTTATATTAGTGTATCTTCACTGCTTTATGAAGCATTTGTTAGGTAAGTTCAAATGTCATGTCCATATATATACAGACGAATAAAACAAGTAGATATTGAGCGACGTTAA</gDNA_template>
            <first_frame> I  S  Q  E  I  C  T  F  F  F  H  Q  K  S  T  D  I  R  K  K  S  S  I  I  N  N  C  D  G  F  E  L  E  A  G  I  Y  I  P  N  S  C  C  *  C  N  W  I  Q  E  E  R  S  A  K  G  D  D  D  D  E  W  I  S  R  S  T  K  V  *  G  D  A  D  E  R  K  T  A  D  G  N  D  R  E  E  S  E  G  S  *  G  G  M  Q  *  R  R  Q  I  G  R  V  Q  G  G  M  G  *  G  G  R  S  *  L  G  *  G  A  F  A  H  Q  A  S  A  *  S  R  S  P  *  T  L  L  S  K  *  P  *  R  R  R  V  P  H  L  *  P  L  I  N  *  L  L  G  F  H  S  C  C  T  W  T  C  L  L  Y  F  S  P  I  *  Y  D  Y  S  *  L  L  V  Q  N  P  P  S  A  F  Q  V  C  Y  I  S  V  S  S  L  L  Y  E  A  F  V  R  *  V  Q  M  S  C  P  Y  I  Y  R  R  I  K  Q  V  D  I  E  R  R  * </first_frame>
            <second_frame>  F  H  K  K  S  V  H  F  F  S  T  R  N  Q  Q  T  S  E  K  S  H  L  *  *  I  I  V  M  A  L  N  L  K  Q  A  S  I  F  P  I  H  V  A  S  V  T  G  S  R  R  K  G  V  Q  K  V  M  M  M  M  S  G  S  A  G  V  P  K  Y  K  G  T  Q  M  R  E  K  Q  L  T  E  M  I  E  K  K  V  K  E  A  K  E  V  C  S  E  D  A  R  S  D  E  C  K  V  A  W  D  E  V  E  E  V  S  *  A  K  V  H  L  R  I  K  L  Q  L  N  Q  D  P  L  E  P  Y  C  Q  N  N  P  D  A  D  E  C  R  T  Y  D  H  *  L  I  N  Y  *  D  F  T  L  V  V  L  G  L  V  Y  C  I  S  L  Q  F  S  M  I  T  V  N  Y  *  Y  K  T  L  H  L  L  F  R  F  V  I  L  V  Y  L  H  C  F  M  K  H  L  L  G  K  F  K  C  H  V  H  I  Y  T  D  E  *  N  K  *  I  L  S  D  V   </second_frame>
            <third_frame>   F  T  R  N  L  Y  I  F  F  P  P  E  I  N  R  H  P  K  K  V  I  Y  N  K  *  L  *  W  L  *  T  *  S  R  H  L  Y  S  Q  F  M  L  L  V  *  L  D  P  G  G  K  E  C  K  R  *  *  *  *  *  V  D  Q  Q  E  Y  Q  S  I  R  G  R  R  *  E  K  N  S  *  R  K  *  *  R  R  K  *  R  K  L  R  R  Y  A  V  K  T  P  D  R  T  S  A  R  W  H  G  M  R  W  K  K  L  A  R  L  R  C  I  C  A  S  S  F  S  L  I  K  I  P  L  N  L  T  V  K  I  T  L  T  P  T  S  A  A  P  M  T  I  N  *  L  I  I  R  I  S  L  L  L  Y  L  D  L  S  T  V  F  L  S  N  L  V  *  L  Q  L  I  T  S  T  K  P  S  I  C  F  S  G  L  L  Y  *  C  I  F  T  A  L  *  S  I  C  *  V  S  S  N  V  M  S  I  Y  I  Q  T  N  K  T  S  R  Y  *  A  T  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="81385" stop="81657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IIVMALNLKQASIFPIHVASVTGSRRKGVQKVMMMMSGSAGVPKYKGTQMREKQLTEMIEKKVKEAKEVCSEDARSDECKVAWDEVEEVS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="108093" PGL_stop="108543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108093" e_stop="108543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="108093" e_stop="108543" e_length="451"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108093" stop="108543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M390-F" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAATTAACGGATTCTGCCCACCGTAGCCTTGCGGATCACCTCACTGCCTCTCGCATGGATGACCTTCTTAGTTATCCTGATAGGCTGTCTGAAGAAATAGTCAAATGCATATCTTGTATATACTGCAAATTTGCCAATCCCAATATTCTTGCTCCAAAGGGATTATCAGTTTCTTCTACTTCGTCATTGTCATCATCAAGCACATTTTCTCCGAGAAATCTTTCGGGCAGCTGGAGCTCACATCACAATGAGGAGAGCACTGAGCAGTATGAATTTGAAGTGATAGAAATTTTGAAGATATGTCTAGATGATGATAGTTTCAATTATGCCACAACAATGCTGCATAAGTTCAGGTTATTTGCAACAAACACAAGTAGTTCAAATAGAGTTAAAGAGTACAAAAATCTTCAATACCTGCTAGTGTGGACTTGATTAAAAAGCATGTTAAG</gDNA_template>
            <first_frame> K  N  *  R  I  L  P  T  V  A  L  R  I  T  S  L  P  L  A  W  M  T  F  L  V  I  L  I  G  C  L  K  K  *  S  N  A  Y  L  V  Y  T  A  N  L  P  I  P  I  F  L  L  Q  R  D  Y  Q  F  L  L  L  R  H  C  H  H  Q  A  H  F  L  R  E  I  F  R  A  A  G  A  H  I  T  M  R  R  A  L  S  S  M  N  L  K  *  *  K  F  *  R  Y  V  *  M  M  I  V  S  I  M  P  Q  Q  C  C  I  S  S  G  Y  L  Q  Q  T  Q  V  V  Q  I  E  L  K  S  T  K  I  F  N  T  C  *  C  G  L  D  *  K  A  C  *  </first_frame>
            <second_frame>  K  I  N  G  F  C  P  P  *  P  C  G  S  P  H  C  L  S  H  G  *  P  S  *  L  S  *  *  A  V  *  R  N  S  Q  M  H  I  L  Y  I  L  Q  I  C  Q  S  Q  Y  S  C  S  K  G  I  I  S  F  F  Y  F  V  I  V  I  I  K  H  I  F  S  E  K  S  F  G  Q  L  E  L  T  S  Q  *  G  E  H  *  A  V  *  I  *  S  D  R  N  F  E  D  M  S  R  *  *  *  F  Q  L  C  H  N  N  A  A  *  V  Q  V  I  C  N  K  H  K  *  F  K  *  S  *  R  V  Q  K  S  S  I  P  A  S  V  D  L  I  K  K  H  V  K </second_frame>
            <third_frame>   K  L  T  D  S  A  H  R  S  L  A  D  H  L  T  A  S  R  M  D  D  L  L  S  Y  P  D  R  L  S  E  E  I  V  K  C  I  S  C  I  Y  C  K  F  A  N  P  N  I  L  A  P  K  G  L  S  V  S  S  T  S  S  L  S  S  S  S  T  F  S  P  R  N  L  S  G  S  W  S  S  H  H  N  E  E  S  T  E  Q  Y  E  F  E  V  I  E  I  L  K  I  C  L  D  D  D  S  F  N  Y  A  T  T  M  L  H  K  F  R  L  F  A  T  N  T  S  S  S  N  R  V  K  E  Y  K  N  L  Q  Y  L  L  V  W  T  *  L  K  S  M  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="108095" stop="108526"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>429</number_coding_nucleotides>
                  <number_encoded_amino_acids>143</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLTDSAHRSLADHLTASRMDDLLSYPDRLSEEIVKCISCIYCKFANPNILAPKGLSVSSTSSLSSSSTFSPRNLSGSWSSHHNEESTEQYEFEVIEILKICLDDDSFNYATTMLHKFRLFATNTSSSNRVKEYKNLQYLLVWT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="108804" PGL_stop="108325"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108804" e_stop="108325"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="108804" e_stop="108325" e_length="480"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108804" stop="108325"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M390-R" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTCCTGCAGAGCATCAACGTAGTAAAAATAAAACTTATATACTACTATATTGAGTATATTCAGATTGTATTGTCATTTCTCCATTTAGAAGTTGCATCTTCTCTTTAGCCTTGATTGGTGGAGAAAGGAGGGAGAAAAGTGACAATTATTTATAAAAACAATTTCTGATGCAGTAGAACTTACCATTTAGATGGAACATTTTACAGCTTTCAAATTAGTATGACAAATTCAAATTGGTGAATTAAGCTTGTCGAACACTTCTTAACATGCTTTTTAATCAAGTCCACACTAGCAGGTATTGAAGATTTTTGTACTCTTTAACTCTATTTGAACTACTTGTGTTTGTTGCAAATAACCTGAACTTATGCAGCATTGTTGTGGCATAATTGAAACTATCATCATCTAGACATATCTTCAAAATTTCTATCACTTCAAATTCATACTGCTCAGTGCTCTCCTCATTGTGATGTGAGCTCCAG</gDNA_template>
            <first_frame> C  P  A  E  H  Q  R  S  K  N  K  T  Y  I  L  L  Y  *  V  Y  S  D  C  I  V  I  S  P  F  R  S  C  I  F  S  L  A  L  I  G  G  E  R  R  E  K  S  D  N  Y  L  *  K  Q  F  L  M  Q  *  N  L  P  F  R  W  N  I  L  Q  L  S  N  *  Y  D  K  F  K  L  V  N  *  A  C  R  T  L  L  N  M  L  F  N  Q  V  H  T  S  R  Y  *  R  F  L  Y  S  L  T  L  F  E  L  L  V  F  V  A  N  N  L  N  L  C  S  I  V  V  A  *  L  K  L  S  S  S  R  H  I  F  K  I  S  I  T  S  N  S  Y  C  S  V  L  S  S  L  *  C  E  L  Q </first_frame>
            <second_frame>  V  L  Q  S  I  N  V  V  K  I  K  L  I  Y  Y  Y  I  E  Y  I  Q  I  V  L  S  F  L  H  L  E  V  A  S  S  L  *  P  *  L  V  E  K  G  G  R  K  V  T  I  I  Y  K  N  N  F  *  C  S  R  T  Y  H  L  D  G  T  F  Y  S  F  Q  I  S  M  T  N  S  N  W  *  I  K  L  V  E  H  F  L  T  C  F  L  I  K  S  T  L  A  G  I  E  D  F  C  T  L  *  L  Y  L  N  Y  L  C  L  L  Q  I  T  *  T  Y  A  A  L  L  W  H  N  *  N  Y  H  H  L  D  I  S  S  K  F  L  S  L  Q  I  H  T  A  Q  C  S  P  H  C  D  V  S  S   </second_frame>
            <third_frame>   S  C  R  A  S  T  *  *  K  *  N  L  Y  T  T  I  L  S  I  F  R  L  Y  C  H  F  S  I  *  K  L  H  L  L  F  S  L  D  W  W  R  K  E  G  E  K  *  Q  L  F  I  K  T  I  S  D  A  V  E  L  T  I  *  M  E  H  F  T  A  F  K  L  V  *  Q  I  Q  I  G  E  L  S  L  S  N  T  S  *  H  A  F  *  S  S  P  H  *  Q  V  L  K  I  F  V  L  F  N  S  I  *  T  T  C  V  C  C  K  *  P  E  L  M  Q  H  C  C  G  I  I  E  T  I  I  I  *  T  Y  L  Q  N  F  Y  H  F  K  F  I  L  L  S  A  L  L  I  V  M  *  A  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C04SLm0059M16.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="124255" PGL_stop="126968"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="124255" e_stop="124290"/>
            <exon e_start="125957" e_stop="126199"/>
            <exon e_start="126393" e_stop="126968"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.958" e_score="0.972"/>
          <exon-intron don_prob="0.994" acc_prob="0.969" e_score="1.000"/>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.972">
            <gDNA_exon_boundary e_start="124255" e_stop="124290" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.958">
            <gDNA_intron_boundary i_start="124291" i_stop="125956" i_length="1666"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="125957" e_stop="126199" e_length="243"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.969">
            <gDNA_intron_boundary i_start="126200" i_stop="126392" i_length="193"/>
          </intron>
          <exon e_serial="3" e_score="0.997">
            <gDNA_exon_boundary e_start="126393" e_stop="126968" e_length="576"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="124255" stop="124290"/>
              <exon start="125957" stop="126199"/>
              <exon start="126393" stop="126968"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-M7073" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGCTCTTCATACTTCTCCAAACAGTCATTTGATAAG : GACCCTTCTTGGCTATCTGTTAGTATCCAGCAGGGAATGGAAAGATGTTCACATTTCAGCTCGATGCTTCAGAGTGGATCCTTCTGAACATCAGAAAAAGGAAGGTGTTAAATCCAGTGTTCAGATTTTTGGTGCTGGAGCAGTTGCTTGCTGTAATGTGGGGAGCGGCAAGAAGACACTAGCAATGTCCATCTGTAGAGAAAATTCAACACTGGAGTGCAAAACGATCAAGCTGCTGCAGAA : GTGTGTCCATCAGGAGCCTTGGGACCATCATTCATATTACCTCCTTGTACTAAATTATCTTCAGAAGGCGCGGGAGAAGAAATTTCCTCGTAACCTGTGTGTTGTTCTTGAGAGGTTGATAAATGTGGCTCTTCGAAGTGAGCTTTATGCAAAAGATGATATTTCTTCCCAGTACCAAAAGTTCCAGCTTCTGCTTTGTGCCGCGGAGGTTAGTTTGCATGGTGGGAATAATTTCAAGTGCATTATGCATGCAAAAAGTACTCTAGAGATGCAGCTTCCAGATAACTACCTCTTCTTTGCACACTTGCTACTATGTCGTGCCTATGCTGTAGAAGATAATTATTCAGGACTTCATGAAGAATACATAAGGTGCTTGCAGCTAAAAACTGATAATCATATTGGTTGGATTTGTCTTAAGTTTCTTGAAAGTCGATACAAGCTGCAGTCAGATTCCAGTTCACTAGCCTTGGCCTTTCAAGAGTGTGGCAAAGAAATAAAAACTTCGTGGAACATGTGGATTGCTATGTATAATTTGGTTCAAGGTCTAACTGCAGCTTGGAATGGGGAATTTATTGA</gDNA_template>
            <first_frame> S  S  S  Y  F  S  K  Q  S  F  D  K  :  D  P  S  W  L  S  V  S  I  Q  Q  G  M  E  R  C  S  H  F  S  S  M  L  Q  S  G  S  F  *  T  S  E  K  G  R  C  *  I  Q  C  S  D  F  W  C  W  S  S  C  L  L  *  C  G  E  R  Q  E  D  T  S  N  V  H  L  *  R  K  F  N  T  G  V  Q  N  D  Q  A  A  A  E  :  V  C  P  S  G  A  L  G  P  S  F  I  L  P  P  C  T  K  L  S  S  E  G  A  G  E  E  I  S  S  *  P  V  C  C  S  *  E  V  D  K  C  G  S  S  K  *  A  L  C  K  R  *  Y  F  F  P  V  P  K  V  P  A  S  A  L  C  R  G  G  *  F  A  W  W  E  *  F  Q  V  H  Y  A  C  K  K  Y  S  R  D  A  A  S  R  *  L  P  L  L  C  T  L  A  T  M  S  C  L  C  C  R  R  *  L  F  R  T  S  *  R  I  H  K  V  L  A  A  K  N  *  *  S  Y  W  L  D  L  S  *  V  S  *  K  S  I  Q  A  A  V  R  F  Q  F  T  S  L  G  L  S  R  V  W  Q  R  N  K  N  F  V  E  H  V  D  C  Y  V  *  F  G  S  R  S  N  C  S  L  E  W  G  I  Y  * </first_frame>
            <second_frame>  A  L  H  T  S  P  N  S  H  L  I  R :   T  L  L  G  Y  L  L  V  S  S  R  E  W  K  D  V  H  I  S  A  R  C  F  R  V  D  P  S  E  H  Q  K  K  E  G  V  K  S  S  V  Q  I  F  G  A  G  A  V  A  C  C  N  V  G  S  G  K  K  T  L  A  M  S  I  C  R  E  N  S  T  L  E  C  K  T  I  K  L  L  Q  K :   C  V  H  Q  E  P  W  D  H  H  S  Y  Y  L  L  V  L  N  Y  L  Q  K  A  R  E  K  K  F  P  R  N  L  C  V  V  L  E  R  L  I  N  V  A  L  R  S  E  L  Y  A  K  D  D  I  S  S  Q  Y  Q  K  F  Q  L  L  L  C  A  A  E  V  S  L  H  G  G  N  N  F  K  C  I  M  H  A  K  S  T  L  E  M  Q  L  P  D  N  Y  L  F  F  A  H  L  L  L  C  R  A  Y  A  V  E  D  N  Y  S  G  L  H  E  E  Y  I  R  C  L  Q  L  K  T  D  N  H  I  G  W  I  C  L  K  F  L  E  S  R  Y  K  L  Q  S  D  S  S  S  L  A  L  A  F  Q  E  C  G  K  E  I  K  T  S  W  N  M  W  I  A  M  Y  N  L  V  Q  G  L  T  A  A  W  N  G  E  F  I   </second_frame>
            <third_frame>   L  F  I  L  L  Q  T  V  I  *  *   : G  P  F  L  A  I  C  *  Y  P  A  G  N  G  K  M  F  T  F  Q  L  D  A  S  E  W  I  L  L  N  I  R  K  R  K  V  L  N  P  V  F  R  F  L  V  L  E  Q  L  L  A  V  M  W  G  A  A  R  R  H  *  Q  C  P  S  V  E  K  I  Q  H  W  S  A  K  R  S  S  C  C  R   : S  V  S  I  R  S  L  G  T  I  I  H  I  T  S  L  Y  *  I  I  F  R  R  R  G  R  R  N  F  L  V  T  C  V  L  F  L  R  G  *  *  M  W  L  F  E  V  S  F  M  Q  K  M  I  F  L  P  S  T  K  S  S  S  F  C  F  V  P  R  R  L  V  C  M  V  G  I  I  S  S  A  L  C  M  Q  K  V  L  *  R  C  S  F  Q  I  T  T  S  S  L  H  T  C  Y  Y  V  V  P  M  L  *  K  I  I  I  Q  D  F  M  K  N  T  *  G  A  C  S  *  K  L  I  I  I  L  V  G  F  V  L  S  F  L  K  V  D  T  S  C  S  Q  I  P  V  H  *  P  W  P  F  K  S  V  A  K  K  *  K  L  R  G  T  C  G  L  L  C  I  I  W  F  K  V  *  L  Q  L  G  M  G  N  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C04SLm0059M16.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="124256" stop="124290"/>
                    <exon start="125957" stop="126199"/>
                    <exon start="126393" stop="126966"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>852</number_coding_nucleotides>
                  <number_encoded_amino_acids>284</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALHTSPNSHLIRTLLGYLLVSSREWKDVHISARCFRVDPSEHQKKEGVKSSVQIFGAGAVACCNVGSGKKTLAMSICRENSTLECKTIKLLQKCVHQEPWDHHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDDISSQYQKFQLLLCAAEVSLHGGNNFKCIMHAKSTLEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIRCLQLKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLTAAWNGEFI</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 104 chains have been computed
$ 
$ memory statistics:
$ 16472 bytes spliced alignments in total
$ 9 spliced alignments have been stored
$ 1830 bytes was the average size of a spliced alignment
$ 14080 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1760 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 105 backtrace matrices have been allocated
$ 
$ date finished: 2009-01-16 03:06:57
-->
